Query 006641
Match_columns 637
No_of_seqs 441 out of 3152
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.3E-43 4.6E-48 361.6 31.1 255 26-401 21-277 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 4.9E-43 1.7E-47 358.9 26.0 252 22-388 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 8.7E-34 3E-38 276.1 19.9 177 21-198 9-185 (213)
4 4f02_A Polyadenylate-binding p 100.0 1.1E-31 3.7E-36 261.3 21.2 174 205-395 14-188 (213)
5 1g9l_A Polyadenylate-binding p 100.0 4.2E-32 1.5E-36 233.8 12.0 89 548-636 53-141 (144)
6 3md3_A Nuclear and cytoplasmic 100.0 1.6E-30 5.5E-35 242.3 20.3 164 28-192 1-165 (166)
7 2dyd_A Poly(A)-binding protein 100.0 4.6E-33 1.6E-37 217.3 1.3 77 547-623 8-84 (85)
8 1l3k_A Heterogeneous nuclear r 100.0 4.1E-30 1.4E-34 246.7 21.0 175 21-197 7-186 (196)
9 1b7f_A Protein (SXL-lethal pro 100.0 5.1E-30 1.7E-34 239.6 20.8 164 26-191 2-168 (168)
10 1fxl_A Paraneoplastic encephal 100.0 7E-30 2.4E-34 238.2 21.5 163 26-190 1-166 (167)
11 1ifw_A Polyadenylate-binding p 100.0 3.5E-32 1.2E-36 215.7 4.6 78 547-624 6-85 (92)
12 3md3_A Nuclear and cytoplasmic 100.0 4.1E-30 1.4E-34 239.5 18.4 165 207-387 1-166 (166)
13 2qfj_A FBP-interacting repress 100.0 1.1E-29 3.8E-34 247.6 19.9 170 26-195 27-206 (216)
14 2qfj_A FBP-interacting repress 100.0 1.5E-29 5.3E-34 246.6 20.5 177 205-388 27-205 (216)
15 1l3k_A Heterogeneous nuclear r 100.0 1.6E-29 5.6E-34 242.5 19.5 177 203-393 10-188 (196)
16 3nmr_A Cugbp ELAV-like family 100.0 3.3E-29 1.1E-33 235.6 21.2 165 26-191 2-174 (175)
17 1nmr_A Poly(A)-binding protein 100.0 3.5E-32 1.2E-36 212.3 -0.6 74 548-621 10-83 (85)
18 3kuj_A Polyadenylate-binding p 100.0 4.3E-31 1.5E-35 208.4 5.2 78 548-625 7-84 (88)
19 1fxl_A Paraneoplastic encephal 100.0 4.2E-29 1.4E-33 232.9 19.0 162 206-385 2-167 (167)
20 3nmr_A Cugbp ELAV-like family 100.0 4.1E-29 1.4E-33 235.0 18.7 165 205-386 2-175 (175)
21 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-29 9E-34 234.7 16.5 163 205-385 2-168 (168)
22 2cjk_A Nuclear polyadenylated 100.0 1.1E-29 3.7E-34 237.2 13.1 165 25-194 1-166 (167)
23 2cjk_A Nuclear polyadenylated 100.0 3.1E-29 1.1E-33 234.0 13.1 163 205-388 2-166 (167)
24 1fje_B Nucleolin RBD12, protei 100.0 2.9E-29 1E-33 236.2 12.0 168 21-194 7-174 (175)
25 3tyt_A Heterogeneous nuclear r 100.0 5E-28 1.7E-32 233.0 17.7 154 25-184 2-193 (205)
26 2g4b_A Splicing factor U2AF 65 100.0 1.2E-27 4E-32 224.5 19.2 158 25-191 2-171 (172)
27 3smz_A Protein raver-1, ribonu 100.0 1.4E-27 4.7E-32 243.1 21.1 173 25-197 93-267 (284)
28 3pgw_A U1-A; protein-RNA compl 100.0 3.9E-27 1.3E-31 239.5 21.3 164 22-192 4-281 (282)
29 2yh0_A Splicing factor U2AF 65 99.9 2.6E-27 8.8E-32 227.5 18.2 163 25-194 2-194 (198)
30 1i2t_A HYD protein; four alpha 99.9 3.2E-29 1.1E-33 183.7 3.0 60 561-620 1-60 (61)
31 3tyt_A Heterogeneous nuclear r 99.9 4.2E-28 1.4E-32 233.6 11.7 176 205-385 3-204 (205)
32 1fje_B Nucleolin RBD12, protei 99.9 3.3E-28 1.1E-32 229.0 10.4 165 203-388 10-174 (175)
33 2g4b_A Splicing factor U2AF 65 99.9 2.8E-27 9.4E-32 221.9 16.6 158 205-386 3-172 (172)
34 3pgw_A U1-A; protein-RNA compl 99.9 3.9E-27 1.3E-31 239.5 18.7 178 204-387 7-282 (282)
35 2adc_A Polypyrimidine tract-bi 99.9 6.4E-27 2.2E-31 230.2 18.7 162 23-193 30-227 (229)
36 3sde_A Paraspeckle component 1 99.9 1.9E-26 6.5E-31 231.4 19.6 160 22-195 17-180 (261)
37 2ghp_A U4/U6 snRNA-associated 99.9 1.1E-26 3.6E-31 237.6 16.6 167 26-194 116-291 (292)
38 2yh0_A Splicing factor U2AF 65 99.9 9.8E-27 3.3E-31 223.4 15.1 179 205-389 3-195 (198)
39 1qm9_A Polypyrimidine tract-bi 99.9 1.5E-26 5.2E-31 222.2 15.5 158 27-193 3-196 (198)
40 3sde_A Paraspeckle component 1 99.9 4.1E-26 1.4E-30 229.0 17.9 158 203-389 19-180 (261)
41 2adc_A Polypyrimidine tract-bi 99.9 1.1E-26 3.6E-31 228.6 12.1 178 203-388 31-228 (229)
42 1qm9_A Polypyrimidine tract-bi 99.9 7.8E-26 2.7E-30 217.3 13.2 175 206-388 3-197 (198)
43 2kn4_A Immunoglobulin G-bindin 99.8 4.5E-21 1.5E-25 177.0 9.6 148 236-389 3-151 (158)
44 4f25_A Polyadenylate-binding p 99.8 9.7E-21 3.3E-25 164.6 10.1 104 26-131 4-113 (115)
45 4fxv_A ELAV-like protein 1; RN 99.8 6.1E-20 2.1E-24 154.7 10.7 82 306-387 16-98 (99)
46 3s8s_A Histone-lysine N-methyl 99.8 3.6E-19 1.2E-23 152.9 13.6 89 307-395 4-93 (110)
47 2kn4_A Immunoglobulin G-bindin 99.8 2.7E-19 9.3E-24 165.0 13.0 138 56-195 2-151 (158)
48 4fxv_A ELAV-like protein 1; RN 99.8 2E-19 7E-24 151.5 10.6 82 25-106 17-98 (99)
49 2i2y_A Fusion protein consists 99.8 1.5E-19 5E-24 165.2 9.8 138 244-388 10-148 (150)
50 4f25_A Polyadenylate-binding p 99.8 3E-19 1E-23 155.2 10.0 108 114-222 4-113 (115)
51 3q2s_C Cleavage and polyadenyl 99.8 7.7E-19 2.6E-23 171.5 8.1 85 308-392 67-154 (229)
52 2i2y_A Fusion protein consists 99.8 2.3E-18 7.8E-23 157.3 10.3 124 66-194 10-148 (150)
53 3s8s_A Histone-lysine N-methyl 99.8 3.5E-18 1.2E-22 146.7 10.7 83 25-107 4-86 (110)
54 2e5h_A Zinc finger CCHC-type a 99.8 3.6E-18 1.2E-22 142.7 10.5 90 16-105 5-94 (94)
55 1x5u_A Splicing factor 3B subu 99.7 9.8E-18 3.3E-22 143.1 13.0 90 21-110 9-98 (105)
56 2lxi_A RNA-binding protein 10; 99.7 9.5E-19 3.2E-23 145.0 5.9 83 27-109 1-85 (91)
57 1x5s_A Cold-inducible RNA-bind 99.7 8.9E-18 3E-22 142.6 11.8 90 22-111 7-96 (102)
58 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-17 4.5E-22 144.9 13.1 92 20-111 8-99 (115)
59 2kxn_B Transformer-2 protein h 99.7 5.6E-18 1.9E-22 150.0 10.9 89 20-108 39-127 (129)
60 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.3E-18 1.8E-22 139.4 10.0 85 24-108 3-87 (87)
61 2lxi_A RNA-binding protein 10; 99.7 1.1E-18 3.7E-23 144.7 5.8 80 310-389 2-84 (91)
62 2dnz_A Probable RNA-binding pr 99.7 1.4E-17 4.9E-22 139.3 12.8 86 24-109 2-87 (95)
63 2lkz_A RNA-binding protein 5; 99.7 1.8E-18 6.3E-23 143.9 7.0 83 24-106 6-94 (95)
64 2cqc_A Arginine/serine-rich sp 99.7 9E-18 3.1E-22 140.5 10.9 87 20-106 8-94 (95)
65 3lqv_A PRE-mRNA branch site pr 99.7 5.9E-18 2E-22 147.1 10.1 106 23-141 4-109 (115)
66 3md1_A Nuclear and cytoplasmic 99.7 7.6E-18 2.6E-22 137.1 10.1 80 310-389 2-82 (83)
67 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-17 4.1E-22 145.1 11.8 89 21-109 19-107 (115)
68 2do4_A Squamous cell carcinoma 99.7 1.7E-17 5.7E-22 140.3 12.1 87 21-108 11-97 (100)
69 2dgs_A DAZ-associated protein 99.7 2.5E-17 8.5E-22 139.0 12.9 89 21-110 4-92 (99)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.3E-18 3.2E-22 137.3 9.9 82 24-105 4-85 (85)
71 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-17 4.1E-22 137.3 10.5 81 308-388 5-86 (87)
72 2lkz_A RNA-binding protein 5; 99.7 2.4E-18 8.4E-23 143.2 6.4 79 309-387 9-94 (95)
73 2dnm_A SRP46 splicing factor; 99.7 1.6E-17 5.6E-22 141.2 11.7 88 21-108 7-94 (103)
74 2cph_A RNA binding motif prote 99.7 2.2E-17 7.6E-22 141.4 12.5 90 21-110 9-100 (107)
75 2cq0_A Eukaryotic translation 99.7 1.5E-17 5.2E-22 141.4 11.3 88 22-109 10-97 (103)
76 2khc_A Testis-specific RNP-typ 99.7 1.2E-17 4.1E-22 145.8 10.8 82 24-105 37-118 (118)
77 1whw_A Hypothetical protein ri 99.7 2.3E-17 8E-22 139.1 12.0 87 24-110 5-91 (99)
78 2div_A TRNA selenocysteine ass 99.7 1.5E-17 5E-22 140.4 10.7 86 22-107 4-94 (99)
79 2cqd_A RNA-binding region cont 99.7 2.1E-17 7.1E-22 143.8 12.0 92 16-108 6-97 (116)
80 2jrs_A RNA-binding protein 39; 99.7 2.7E-17 9.2E-22 140.9 12.5 86 22-107 21-106 (108)
81 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.3E-18 3.2E-22 142.5 9.4 89 21-109 6-94 (102)
82 2dgp_A Bruno-like 4, RNA bindi 99.7 2.1E-17 7.3E-22 141.2 11.6 90 20-109 6-98 (106)
83 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.8E-18 2.7E-22 156.2 9.5 140 252-393 11-157 (165)
84 2la6_A RNA-binding protein FUS 99.7 2.6E-17 8.7E-22 138.9 11.9 86 20-105 6-99 (99)
85 2do4_A Squamous cell carcinoma 99.7 1.5E-17 5E-22 140.7 10.3 83 307-389 15-97 (100)
86 2dnh_A Bruno-like 5, RNA bindi 99.7 4.4E-17 1.5E-21 139.0 13.3 87 23-110 11-100 (105)
87 1sjq_A Polypyrimidine tract-bi 99.7 5.3E-18 1.8E-22 142.6 7.3 79 306-389 13-93 (105)
88 3r27_A HnRNP L, heterogeneous 99.7 8.1E-18 2.8E-22 140.0 8.3 80 305-389 17-98 (100)
89 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-17 4.5E-22 133.4 9.2 76 309-389 7-82 (89)
90 1p27_B RNA-binding protein 8A; 99.7 2.4E-17 8.3E-22 140.9 11.5 87 22-108 18-104 (106)
91 2ywk_A Putative RNA-binding pr 99.7 1.8E-17 6E-22 138.7 10.1 84 21-105 10-93 (95)
92 3md1_A Nuclear and cytoplasmic 99.7 2.3E-17 7.8E-22 134.3 10.5 81 27-107 1-81 (83)
93 3ns6_A Eukaryotic translation 99.7 5.4E-18 1.9E-22 143.2 6.9 84 308-391 5-96 (100)
94 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.7E-17 5.9E-22 135.7 9.4 80 307-386 5-85 (85)
95 2ywk_A Putative RNA-binding pr 99.7 1.9E-17 6.6E-22 138.5 9.9 82 306-387 13-94 (95)
96 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.4E-18 2.9E-22 154.5 8.3 83 307-389 37-120 (156)
97 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.3E-17 1.5E-21 138.6 12.2 88 21-110 9-96 (103)
98 3p5t_L Cleavage and polyadenyl 99.7 4.6E-18 1.6E-22 140.7 5.9 82 310-391 2-86 (90)
99 2d9p_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 138.2 12.3 88 20-109 8-95 (103)
100 2x1f_A MRNA 3'-END-processing 99.7 2.3E-17 7.9E-22 138.3 10.1 83 26-108 1-83 (96)
101 1x4h_A RNA-binding protein 28; 99.7 4.5E-17 1.6E-21 140.5 12.2 88 22-109 10-103 (111)
102 2dng_A Eukaryotic translation 99.7 4.4E-17 1.5E-21 138.5 11.9 89 20-110 8-96 (103)
103 1whw_A Hypothetical protein ri 99.7 1.2E-17 4.1E-22 140.9 8.3 83 307-389 6-89 (99)
104 2dh8_A DAZ-associated protein 99.7 3.3E-17 1.1E-21 139.8 11.1 93 17-110 6-98 (105)
105 2x1f_A MRNA 3'-END-processing 99.7 2.2E-17 7.6E-22 138.4 9.8 83 309-391 2-85 (96)
106 1s79_A Lupus LA protein; RRM, 99.7 1.3E-17 4.4E-22 141.3 8.4 84 308-392 10-93 (103)
107 1x5t_A Splicing factor 3B subu 99.7 2E-17 6.8E-22 138.7 9.4 85 25-109 3-88 (96)
108 3p5t_L Cleavage and polyadenyl 99.7 1.2E-17 4E-22 138.3 7.2 81 28-108 2-84 (90)
109 3n9u_C Cleavage and polyadenyl 99.7 4.6E-17 1.6E-21 148.9 11.9 85 308-392 54-141 (156)
110 3pgw_S U1-70K; protein-RNA com 99.7 4.7E-18 1.6E-22 181.5 6.1 83 307-389 100-183 (437)
111 1wi8_A EIF-4B, eukaryotic tran 99.7 4.5E-17 1.5E-21 138.7 11.0 88 21-110 9-97 (104)
112 2cpf_A RNA binding motif prote 99.7 3.8E-17 1.3E-21 137.6 10.4 86 25-110 3-91 (98)
113 2cpz_A CUG triplet repeat RNA- 99.7 2.7E-17 9.3E-22 142.9 9.8 83 307-389 23-106 (115)
114 2cpy_A RNA-binding protein 12; 99.7 1.2E-17 4E-22 144.8 7.3 86 307-393 13-99 (114)
115 2cqc_A Arginine/serine-rich sp 99.7 4.7E-17 1.6E-21 136.1 10.7 82 306-387 12-94 (95)
116 2dnz_A Probable RNA-binding pr 99.7 2.8E-17 9.6E-22 137.5 9.2 81 308-388 4-85 (95)
117 2d9p_A Polyadenylate-binding p 99.7 1.6E-17 5.6E-22 141.2 7.8 84 305-389 11-94 (103)
118 3ulh_A THO complex subunit 4; 99.7 3.8E-17 1.3E-21 139.9 10.2 82 305-386 25-106 (107)
119 1oo0_B CG8781-PA, drosophila Y 99.7 3.7E-17 1.3E-21 140.8 10.1 88 21-108 20-107 (110)
120 2dnh_A Bruno-like 5, RNA bindi 99.7 2.8E-17 9.7E-22 140.2 9.2 84 307-390 13-99 (105)
121 2e5h_A Zinc finger CCHC-type a 99.7 4.2E-17 1.4E-21 136.1 10.0 80 307-386 14-94 (94)
122 2cqp_A RNA-binding protein 12; 99.7 2.7E-17 9.1E-22 138.5 8.7 86 22-107 10-95 (98)
123 1sjq_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 137.0 9.8 83 23-111 12-96 (105)
124 2cq3_A RNA-binding protein 9; 99.7 1.2E-16 4.1E-21 135.8 12.8 87 21-109 9-95 (103)
125 2dgx_A KIAA0430 protein; RRM d 99.7 4E-17 1.4E-21 136.8 9.6 79 308-388 8-90 (96)
126 2fy1_A RNA-binding motif prote 99.7 2.5E-17 8.6E-22 143.1 8.6 82 307-388 5-86 (116)
127 1x5t_A Splicing factor 3B subu 99.7 2.3E-17 7.7E-22 138.4 7.9 82 308-389 4-87 (96)
128 2cq0_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 139.3 9.0 84 306-389 12-96 (103)
129 2cpf_A RNA binding motif prote 99.7 4.3E-17 1.5E-21 137.2 9.5 82 308-389 4-89 (98)
130 2do0_A HnRNP M, heterogeneous 99.7 5.8E-17 2E-21 140.5 10.6 82 307-388 13-94 (114)
131 2wbr_A GW182, gawky, LD47780P; 99.7 4E-17 1.4E-21 130.7 8.6 76 24-105 4-79 (89)
132 2dgo_A Cytotoxic granule-assoc 99.7 5.9E-17 2E-21 140.7 10.5 83 307-389 13-96 (115)
133 2dhg_A TRNA selenocysteine ass 99.7 1.1E-16 3.8E-21 136.3 12.0 86 23-109 5-92 (104)
134 2lea_A Serine/arginine-rich sp 99.7 6.6E-18 2.3E-22 150.9 4.5 122 249-389 6-128 (135)
135 2db1_A Heterogeneous nuclear r 99.7 3E-17 1E-21 143.1 8.6 84 307-391 15-101 (118)
136 2cq3_A RNA-binding protein 9; 99.7 6.5E-17 2.2E-21 137.5 10.5 83 306-389 12-94 (103)
137 1x4e_A RNA binding motif, sing 99.7 1.9E-17 6.7E-22 135.4 6.8 82 24-105 2-83 (85)
138 3ns6_A Eukaryotic translation 99.7 3.4E-17 1.2E-21 138.3 8.5 81 26-106 5-92 (100)
139 1oo0_B CG8781-PA, drosophila Y 99.7 3.1E-17 1.1E-21 141.2 8.2 84 306-389 23-107 (110)
140 2cpe_A RNA-binding protein EWS 99.7 8.3E-17 2.8E-21 139.3 10.9 88 22-109 10-105 (113)
141 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.5E-17 1.2E-21 138.9 8.3 83 307-389 10-93 (102)
142 2dnn_A RNA-binding protein 12; 99.7 5.8E-17 2E-21 138.5 9.6 80 309-390 16-95 (109)
143 2cq1_A PTB-like protein L; RRM 99.7 1.1E-16 3.7E-21 134.8 11.1 88 17-110 5-94 (101)
144 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-16 4.7E-21 143.4 12.6 88 22-109 37-124 (139)
145 1p27_B RNA-binding protein 8A; 99.7 5.3E-17 1.8E-21 138.8 9.3 84 306-389 20-104 (106)
146 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.6E-17 2.9E-21 136.7 10.6 83 306-389 12-94 (103)
147 1wex_A Hypothetical protein (r 99.7 1.3E-16 4.4E-21 135.1 11.6 83 22-110 10-94 (104)
148 2dha_A FLJ20171 protein; RRM d 99.7 4.3E-17 1.5E-21 142.3 8.9 86 307-393 21-110 (123)
149 2la6_A RNA-binding protein FUS 99.7 4.8E-17 1.7E-21 137.2 8.9 81 306-386 10-99 (99)
150 2ek1_A RNA-binding protein 12; 99.7 2E-17 7E-22 138.3 6.6 83 23-105 11-93 (95)
151 2fy1_A RNA-binding motif prote 99.7 1.4E-16 4.8E-21 138.3 12.1 84 24-108 4-87 (116)
152 1x5u_A Splicing factor 3B subu 99.7 3.7E-17 1.3E-21 139.5 8.3 84 306-389 12-96 (105)
153 1p1t_A Cleavage stimulation fa 99.7 4.5E-17 1.5E-21 138.7 8.7 86 308-393 7-93 (104)
154 3s7r_A Heterogeneous nuclear r 99.7 9.7E-17 3.3E-21 131.8 10.3 82 22-104 6-87 (87)
155 2dgs_A DAZ-associated protein 99.7 4.9E-17 1.7E-21 137.1 8.8 82 307-389 8-90 (99)
156 2hgl_A HNRPF protein, heteroge 99.7 2.8E-17 9.5E-22 146.2 7.5 84 307-391 42-128 (136)
157 2rs2_A Musashi-1, RNA-binding 99.7 5.7E-17 1.9E-21 139.2 9.2 85 23-108 21-105 (109)
158 2do0_A HnRNP M, heterogeneous 99.7 1.7E-16 5.7E-21 137.6 12.2 88 19-107 7-94 (114)
159 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-16 5.6E-21 131.9 11.7 84 23-108 4-87 (92)
160 2dhg_A TRNA selenocysteine ass 99.7 2.6E-17 8.8E-22 140.2 6.8 84 306-389 6-91 (104)
161 3ucg_A Polyadenylate-binding p 99.7 7.3E-17 2.5E-21 133.1 9.4 79 309-388 6-85 (89)
162 2hvz_A Splicing factor, argini 99.7 4.4E-17 1.5E-21 138.0 8.1 92 28-124 1-100 (101)
163 2m2b_A RNA-binding protein 10; 99.7 5.3E-17 1.8E-21 144.4 9.0 84 23-107 19-108 (131)
164 1u6f_A Tcubp1, RNA-binding pro 99.7 1.1E-16 3.7E-21 144.1 11.0 83 307-389 40-123 (139)
165 2dgv_A HnRNP M, heterogeneous 99.7 5.8E-17 2E-21 134.7 8.4 82 307-389 6-87 (92)
166 1x4d_A Matrin 3; structural ge 99.7 6.5E-17 2.2E-21 135.9 8.7 85 20-110 8-95 (102)
167 2cph_A RNA binding motif prote 99.7 5.8E-17 2E-21 138.8 8.6 84 306-389 12-98 (107)
168 1x5s_A Cold-inducible RNA-bind 99.7 4.6E-17 1.6E-21 138.1 7.8 83 307-389 10-93 (102)
169 1s79_A Lupus LA protein; RRM, 99.7 8.3E-17 2.8E-21 136.3 9.3 80 25-106 9-88 (103)
170 2err_A Ataxin-2-binding protei 99.7 4.3E-17 1.5E-21 140.0 7.6 82 306-388 26-107 (109)
171 2cqg_A TDP-43, TAR DNA-binding 99.7 2.6E-16 8.8E-21 133.7 12.4 88 21-110 9-96 (103)
172 1x4d_A Matrin 3; structural ge 99.7 2.4E-17 8.1E-22 138.6 5.7 77 307-388 13-92 (102)
173 2ad9_A Polypyrimidine tract-bi 99.7 3.9E-17 1.3E-21 140.9 7.2 80 306-390 28-109 (119)
174 2dgw_A Probable RNA-binding pr 99.7 1.1E-16 3.7E-21 132.8 9.6 80 307-388 8-87 (91)
175 3r27_A HnRNP L, heterogeneous 99.7 9.8E-17 3.3E-21 133.5 9.2 80 22-107 16-97 (100)
176 2cq1_A PTB-like protein L; RRM 99.7 8E-17 2.7E-21 135.6 8.7 79 306-389 12-92 (101)
177 2cqd_A RNA-binding region cont 99.7 1.1E-16 3.9E-21 139.1 10.1 82 306-388 14-96 (116)
178 4a8x_A RNA-binding protein wit 99.7 3.8E-17 1.3E-21 134.5 6.6 81 308-388 3-85 (88)
179 1x4a_A Splicing factor, argini 99.7 3.4E-16 1.2E-20 134.5 12.8 86 21-109 16-101 (109)
180 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.4E-16 4.7E-21 143.5 10.9 86 19-104 55-140 (140)
181 2jrs_A RNA-binding protein 39; 99.7 6.9E-17 2.4E-21 138.4 8.4 83 307-389 24-107 (108)
182 3ucg_A Polyadenylate-binding p 99.7 1.2E-16 4E-21 131.9 9.5 81 26-107 5-85 (89)
183 1x4h_A RNA-binding protein 28; 99.7 9.9E-17 3.4E-21 138.3 9.4 84 306-389 12-102 (111)
184 4a8x_A RNA-binding protein wit 99.7 1.1E-16 3.6E-21 131.8 9.1 83 25-107 2-85 (88)
185 2dgx_A KIAA0430 protein; RRM d 99.7 1.3E-16 4.4E-21 133.7 9.7 83 23-108 5-91 (96)
186 2cq4_A RNA binding motif prote 99.7 7E-17 2.4E-21 140.0 8.3 83 308-391 24-107 (114)
187 2kt5_A RNA and export factor-b 99.7 1.1E-16 3.7E-21 141.0 9.7 82 307-388 33-114 (124)
188 3ulh_A THO complex subunit 4; 99.7 1.7E-16 5.8E-21 135.9 10.7 83 22-105 24-106 (107)
189 2kxn_B Transformer-2 protein h 99.7 3.8E-17 1.3E-21 144.6 6.6 84 306-389 43-127 (129)
190 2dnm_A SRP46 splicing factor; 99.7 4.8E-17 1.6E-21 138.3 7.0 82 307-388 11-93 (103)
191 2khc_A Testis-specific RNP-typ 99.7 6.1E-17 2.1E-21 141.3 7.5 81 306-386 37-118 (118)
192 1p1t_A Cleavage stimulation fa 99.7 1.3E-16 4.5E-21 135.8 9.4 84 25-108 6-89 (104)
193 3s7r_A Heterogeneous nuclear r 99.7 1.8E-16 6.2E-21 130.2 9.9 79 306-385 8-87 (87)
194 2div_A TRNA selenocysteine ass 99.7 9.5E-17 3.2E-21 135.4 8.4 82 307-388 7-94 (99)
195 3ex7_B RNA-binding protein 8A; 99.7 2.2E-16 7.6E-21 139.4 11.0 88 22-109 17-104 (126)
196 2mss_A Protein (musashi1); RNA 99.7 8.3E-17 2.8E-21 128.2 7.4 75 29-104 1-75 (75)
197 1wg5_A Heterogeneous nuclear r 99.7 2.9E-16 1E-20 133.5 11.3 86 21-108 9-95 (104)
198 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.7E-17 2.6E-21 136.2 7.6 85 21-107 13-98 (100)
199 2cpe_A RNA-binding protein EWS 99.7 8.5E-17 2.9E-21 139.2 8.0 84 306-389 12-104 (113)
200 1wi8_A EIF-4B, eukaryotic tran 99.7 1.2E-16 4E-21 136.1 8.7 82 306-389 12-95 (104)
201 1wez_A HnRNP H', FTP-3, hetero 99.7 2.6E-16 8.8E-21 133.2 10.7 85 21-108 9-93 (102)
202 2cpi_A CCR4-NOT transcription 99.7 7.9E-17 2.7E-21 138.9 7.7 83 307-389 13-102 (111)
203 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.3E-17 2.8E-21 128.9 7.1 76 28-104 1-76 (77)
204 2dis_A Unnamed protein product 99.7 2.7E-16 9.3E-21 135.1 10.9 87 23-109 4-94 (109)
205 2dng_A Eukaryotic translation 99.7 1.9E-16 6.4E-21 134.6 9.6 81 307-389 13-94 (103)
206 2mss_A Protein (musashi1); RNA 99.7 5.4E-17 1.8E-21 129.3 5.8 74 311-385 1-75 (75)
207 2a3j_A U1 small nuclear ribonu 99.7 1.1E-16 3.6E-21 140.8 8.3 86 306-393 26-115 (127)
208 2cpi_A CCR4-NOT transcription 99.7 1.6E-16 5.5E-21 136.9 9.2 87 22-108 10-102 (111)
209 2a3j_A U1 small nuclear ribonu 99.7 2.3E-16 7.9E-21 138.6 10.3 85 22-109 24-112 (127)
210 2dgp_A Bruno-like 4, RNA bindi 99.7 9.1E-17 3.1E-21 137.3 7.6 83 307-389 11-97 (106)
211 2db1_A Heterogeneous nuclear r 99.7 7.5E-17 2.6E-21 140.5 7.1 89 17-107 7-98 (118)
212 2kt5_A RNA and export factor-b 99.7 3.6E-16 1.2E-20 137.6 11.6 86 22-108 30-115 (124)
213 1x4a_A Splicing factor, argini 99.7 1.8E-16 6E-21 136.3 9.3 80 307-388 20-99 (109)
214 2lea_A Serine/arginine-rich sp 99.7 1.3E-16 4.4E-21 142.5 8.6 86 23-108 43-128 (135)
215 2fc9_A NCL protein; structure 99.7 2.7E-16 9.3E-21 133.1 10.2 84 22-109 10-93 (101)
216 2dgw_A Probable RNA-binding pr 99.7 3.2E-16 1.1E-20 129.8 10.4 84 22-108 5-88 (91)
217 2cqp_A RNA-binding protein 12; 99.7 8.4E-17 2.9E-21 135.4 6.9 82 307-388 13-95 (98)
218 1wg5_A Heterogeneous nuclear r 99.7 8.1E-17 2.8E-21 137.0 6.8 82 307-389 13-95 (104)
219 2ek1_A RNA-binding protein 12; 99.7 8.2E-17 2.8E-21 134.6 6.7 80 308-387 14-94 (95)
220 3n9u_C Cleavage and polyadenyl 99.7 2.1E-16 7.1E-21 144.6 9.9 81 26-106 54-136 (156)
221 2err_A Ataxin-2-binding protei 99.7 1.9E-16 6.4E-21 136.0 9.0 84 22-107 24-107 (109)
222 1wez_A HnRNP H', FTP-3, hetero 99.7 5.8E-17 2E-21 137.2 5.7 80 307-388 13-92 (102)
223 2dh8_A DAZ-associated protein 99.7 1.4E-16 4.8E-21 135.9 8.1 83 306-389 13-96 (105)
224 2cpj_A Non-POU domain-containi 99.7 4.5E-16 1.5E-20 131.2 11.1 84 21-110 9-92 (99)
225 1wex_A Hypothetical protein (r 99.7 1E-16 3.5E-21 135.8 6.9 78 307-389 13-92 (104)
226 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.9E-17 1.7E-21 137.4 4.8 81 306-388 16-98 (100)
227 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-16 5.6E-21 135.9 8.1 79 308-389 27-106 (111)
228 2ki2_A SS-DNA binding protein 99.7 7.5E-17 2.6E-21 133.4 5.8 80 28-108 2-81 (90)
229 1x5o_A RNA binding motif, sing 99.7 1.9E-16 6.5E-21 137.2 8.6 82 307-388 23-112 (114)
230 1h2v_Z 20 kDa nuclear CAP bind 99.7 5E-16 1.7E-20 142.6 11.8 87 23-109 35-121 (156)
231 2rs2_A Musashi-1, RNA-binding 99.7 2.7E-16 9.2E-21 135.0 9.3 82 307-389 23-105 (109)
232 2cq4_A RNA binding motif prote 99.7 1.9E-16 6.5E-21 137.2 8.3 81 26-107 24-104 (114)
233 3ex7_B RNA-binding protein 8A; 99.6 1.6E-16 5.5E-21 140.3 8.0 84 306-389 19-103 (126)
234 1why_A Hypothetical protein ri 99.6 7.2E-16 2.5E-20 129.4 11.5 82 21-108 11-94 (97)
235 2ad9_A Polypyrimidine tract-bi 99.6 5.1E-16 1.8E-20 133.9 10.7 83 23-111 27-111 (119)
236 2fc8_A NCL protein; structure 99.6 4.4E-16 1.5E-20 132.0 10.1 87 21-110 9-95 (102)
237 2dnq_A RNA-binding protein 4B; 99.6 1E-15 3.5E-20 126.5 12.1 80 23-110 4-83 (90)
238 2lmi_A GRSF-1, G-rich sequence 99.6 4.8E-17 1.7E-21 139.2 4.1 85 307-392 9-96 (107)
239 1x4b_A Heterogeneous nuclear r 99.6 2.8E-16 9.7E-21 136.6 8.7 84 26-110 26-109 (116)
240 2nlw_A Eukaryotic translation 99.6 1.2E-16 4.2E-21 136.2 6.3 80 308-388 14-100 (105)
241 2cpy_A RNA-binding protein 12; 99.6 1.9E-16 6.5E-21 137.1 7.6 84 22-107 10-94 (114)
242 1wel_A RNA-binding protein 12; 99.6 1.6E-16 5.4E-21 139.9 7.1 86 307-393 23-109 (124)
243 2m2b_A RNA-binding protein 10; 99.6 4.7E-17 1.6E-21 144.7 3.7 81 307-388 21-108 (131)
244 2fc9_A NCL protein; structure 99.6 2.7E-16 9.3E-21 133.1 8.2 79 307-388 13-91 (101)
245 2jwn_A Embryonic polyadenylate 99.6 3.6E-16 1.2E-20 137.7 9.3 80 308-388 35-115 (124)
246 1nu4_A U1A RNA binding domain; 99.6 1.9E-16 6.3E-21 133.0 7.1 85 306-392 5-93 (97)
247 2cqg_A TDP-43, TAR DNA-binding 99.6 6.3E-16 2.2E-20 131.3 10.5 82 306-389 12-94 (103)
248 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-16 4E-21 128.0 5.3 75 310-385 1-76 (77)
249 1x4c_A Splicing factor, argini 99.6 1.1E-15 3.9E-20 130.9 11.8 81 22-109 10-95 (108)
250 2krb_A Eukaryotic translation 99.6 9E-17 3.1E-21 130.1 4.5 72 310-382 2-80 (81)
251 1x4b_A Heterogeneous nuclear r 99.6 3E-16 1E-20 136.4 8.1 81 308-389 26-107 (116)
252 2ki2_A SS-DNA binding protein 99.6 6.3E-17 2.2E-21 133.9 3.5 80 310-390 2-82 (90)
253 3lqv_A PRE-mRNA branch site pr 99.6 3.5E-16 1.2E-20 135.8 8.4 80 307-388 6-85 (115)
254 1x4e_A RNA binding motif, sing 99.6 6.8E-17 2.3E-21 132.1 3.6 79 308-386 4-83 (85)
255 2jwn_A Embryonic polyadenylate 99.6 5.7E-16 2E-20 136.4 9.8 81 27-108 36-116 (124)
256 1x4f_A Matrin 3; structural ge 99.6 8.6E-17 2.9E-21 137.2 4.3 79 306-389 22-103 (112)
257 2la4_A Nuclear and cytoplasmic 99.6 3.9E-16 1.3E-20 132.1 8.4 77 307-388 25-101 (101)
258 1x4c_A Splicing factor, argini 99.6 6.1E-16 2.1E-20 132.6 9.6 77 307-389 13-94 (108)
259 2ytc_A PRE-mRNA-splicing facto 99.6 9.4E-16 3.2E-20 125.3 10.2 78 22-105 7-85 (85)
260 2jvr_A Nucleolar protein 3; RN 99.6 3E-16 1E-20 134.3 7.4 85 23-111 24-109 (111)
261 1rk8_A CG8781-PA, CG8781-PA pr 99.6 7.3E-16 2.5E-20 142.8 10.7 88 23-110 68-155 (165)
262 2dnn_A RNA-binding protein 12; 99.6 4.3E-16 1.5E-20 133.1 8.4 83 21-106 10-92 (109)
263 2dgu_A Heterogeneous nuclear r 99.6 9.3E-16 3.2E-20 130.2 10.3 75 308-389 10-84 (103)
264 2ytc_A PRE-mRNA-splicing facto 99.6 6.7E-16 2.3E-20 126.1 9.0 76 306-386 9-85 (85)
265 1why_A Hypothetical protein ri 99.6 5E-16 1.7E-20 130.4 8.2 77 307-388 15-93 (97)
266 2dis_A Unnamed protein product 99.6 3.7E-16 1.3E-20 134.2 7.5 83 308-390 7-94 (109)
267 1wel_A RNA-binding protein 12; 99.6 3.4E-16 1.2E-20 137.8 7.4 85 22-107 20-104 (124)
268 1x4g_A Nucleolysin TIAR; struc 99.6 9.2E-16 3.2E-20 131.7 9.7 79 306-389 22-100 (109)
269 3q2s_C Cleavage and polyadenyl 99.6 6.7E-16 2.3E-20 150.7 9.9 81 26-106 67-149 (229)
270 2cq2_A Hypothetical protein LO 99.6 4.1E-16 1.4E-20 133.0 7.2 78 306-388 22-106 (114)
271 1x4f_A Matrin 3; structural ge 99.6 7.2E-16 2.4E-20 131.5 8.7 82 22-109 20-104 (112)
272 1x5o_A RNA binding motif, sing 99.6 2.6E-15 8.9E-20 130.0 12.4 83 23-106 21-111 (114)
273 2krb_A Eukaryotic translation 99.6 6.6E-16 2.2E-20 124.9 8.0 73 27-101 1-80 (81)
274 2jvo_A Nucleolar protein 3; nu 99.6 6.8E-16 2.3E-20 132.1 8.6 78 306-390 28-105 (108)
275 2dnq_A RNA-binding protein 4B; 99.6 8E-16 2.7E-20 127.2 8.6 76 307-389 6-81 (90)
276 2e5j_A Methenyltetrahydrofolat 99.6 1.9E-15 6.6E-20 126.8 11.1 81 22-107 14-94 (97)
277 2xnq_A Nuclear polyadenylated 99.6 1.4E-15 4.6E-20 127.6 10.0 76 306-388 19-95 (97)
278 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.5E-20 129.8 9.9 80 25-106 13-99 (105)
279 2cpj_A Non-POU domain-containi 99.6 4.9E-16 1.7E-20 130.9 7.0 77 307-388 13-89 (99)
280 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.9E-21 142.7 3.1 81 307-389 44-124 (139)
281 2hgl_A HNRPF protein, heteroge 99.6 5.9E-16 2E-20 137.6 7.6 83 22-106 39-124 (136)
282 2hgm_A HNRPF protein, heteroge 99.6 2.5E-16 8.6E-21 137.7 5.1 82 307-390 40-123 (126)
283 1nu4_A U1A RNA binding domain; 99.6 5.2E-16 1.8E-20 130.3 6.9 84 23-109 4-91 (97)
284 1iqt_A AUF1, heterogeneous nuc 99.6 3.8E-16 1.3E-20 124.3 5.8 75 29-104 1-75 (75)
285 1x4g_A Nucleolysin TIAR; struc 99.6 1.7E-15 5.8E-20 130.1 10.2 82 24-111 22-103 (109)
286 2hvz_A Splicing factor, argini 99.6 4.1E-16 1.4E-20 132.0 6.3 76 310-389 1-76 (101)
287 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.9E-16 3.4E-20 137.9 9.1 79 307-385 61-140 (140)
288 1fj7_A Nucleolin RBD1, protein 99.6 2.8E-16 9.7E-21 133.0 5.0 84 23-108 13-96 (101)
289 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5E-20 128.5 9.1 78 23-106 23-100 (101)
290 1whx_A Hypothetical protein ri 99.6 7.6E-16 2.6E-20 132.5 7.5 76 308-388 9-84 (111)
291 2jvo_A Nucleolar protein 3; nu 99.6 1.6E-15 5.4E-20 129.8 9.3 80 21-108 25-104 (108)
292 2cpx_A Hypothetical protein FL 99.6 8.6E-16 2.9E-20 133.3 7.8 87 23-109 21-107 (115)
293 2dgt_A RNA-binding protein 30; 99.6 2.8E-15 9.7E-20 124.4 10.6 81 21-109 4-84 (92)
294 2diu_A KIAA0430 protein; struc 99.6 3.8E-15 1.3E-19 120.2 10.9 75 27-111 9-88 (96)
295 2lmi_A GRSF-1, G-rich sequence 99.6 7.8E-16 2.7E-20 131.7 7.3 83 22-106 6-91 (107)
296 2j8a_A Histone-lysine N-methyl 99.6 1.1E-15 3.7E-20 130.6 7.9 80 310-389 3-97 (136)
297 2e5j_A Methenyltetrahydrofolat 99.6 8.3E-16 2.8E-20 129.0 7.2 79 307-389 17-95 (97)
298 2dnp_A RNA-binding protein 14; 99.6 2.4E-15 8.1E-20 124.3 9.8 79 23-109 5-83 (90)
299 2dgt_A RNA-binding protein 30; 99.6 2.1E-15 7E-20 125.2 9.5 76 306-388 7-82 (92)
300 2xs2_A Deleted in azoospermia- 99.6 6.5E-16 2.2E-20 131.0 6.5 83 307-391 7-89 (102)
301 1iqt_A AUF1, heterogeneous nuc 99.6 3.5E-16 1.2E-20 124.5 4.5 74 311-385 1-75 (75)
302 3pgw_S U1-70K; protein-RNA com 99.6 5E-16 1.7E-20 165.8 6.9 157 34-195 4-183 (437)
303 1fjc_A Nucleolin RBD2, protein 99.6 7.9E-16 2.7E-20 128.9 6.7 78 307-388 14-91 (96)
304 2xnq_A Nuclear polyadenylated 99.6 3.1E-15 1.1E-19 125.4 10.3 79 21-107 16-95 (97)
305 2dnp_A RNA-binding protein 14; 99.6 2E-15 7E-20 124.7 8.9 75 307-388 7-81 (90)
306 2e44_A Insulin-like growth fac 99.6 2.5E-15 8.6E-20 125.8 9.4 85 19-107 7-92 (96)
307 1wf1_A RNA-binding protein RAL 99.6 3.9E-15 1.3E-19 128.0 10.7 79 23-109 23-102 (110)
308 2lcw_A RNA-binding protein FUS 99.4 8.2E-17 2.8E-21 140.0 0.0 83 308-390 6-97 (116)
309 2kvi_A Nuclear polyadenylated 99.6 7E-16 2.4E-20 129.2 5.7 77 306-389 7-84 (96)
310 2f3j_A RNA and export factor b 99.6 1.3E-15 4.4E-20 142.4 8.0 83 307-389 86-168 (177)
311 2kvi_A Nuclear polyadenylated 99.6 3.2E-15 1.1E-19 125.2 9.4 78 23-108 6-84 (96)
312 1whx_A Hypothetical protein ri 99.6 1.8E-15 6E-20 130.3 7.8 79 24-108 7-85 (111)
313 2pe8_A Splicing factor 45; RRM 99.6 6.3E-15 2.1E-19 125.0 10.8 83 306-388 5-94 (105)
314 3egn_A RNA-binding protein 40; 99.6 8.2E-16 2.8E-20 139.0 5.7 86 306-391 42-133 (143)
315 3d2w_A TAR DNA-binding protein 99.6 2.6E-15 8.9E-20 123.6 8.2 78 306-391 8-87 (89)
316 1wg1_A KIAA1579 protein, homol 99.6 2.6E-15 8.8E-20 123.5 8.1 75 308-388 4-78 (88)
317 2f3j_A RNA and export factor b 99.6 4.2E-15 1.4E-19 138.9 10.5 84 23-107 84-167 (177)
318 2lcw_A RNA-binding protein FUS 99.4 1.2E-16 4.1E-21 139.0 0.0 87 25-111 5-99 (116)
319 2cpd_A Apobec-1 stimulating pr 99.6 4.5E-15 1.5E-19 125.0 9.7 75 307-388 13-89 (99)
320 2fc8_A NCL protein; structure 99.6 3.1E-15 1.1E-19 126.8 8.7 81 306-389 12-93 (102)
321 1x5p_A Negative elongation fac 99.6 1.3E-14 4.5E-19 121.6 12.4 81 22-110 10-90 (97)
322 2cpx_A Hypothetical protein FL 99.6 1.5E-15 5.2E-20 131.7 6.8 80 307-389 23-106 (115)
323 2dgu_A Heterogeneous nuclear r 99.6 5.5E-15 1.9E-19 125.4 10.1 77 25-109 9-85 (103)
324 1sjr_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 135.5 9.1 77 309-388 46-124 (164)
325 2hgm_A HNRPF protein, heteroge 99.6 3.4E-15 1.2E-19 130.5 8.9 81 23-106 38-120 (126)
326 2cqh_A IGF-II mRNA-binding pro 99.6 1.8E-15 6.1E-20 125.9 6.8 75 308-388 7-83 (93)
327 1fj7_A Nucleolin RBD1, protein 99.6 2.7E-16 9.1E-21 133.1 1.8 80 308-389 16-96 (101)
328 1wg1_A KIAA1579 protein, homol 99.6 3.4E-15 1.2E-19 122.8 8.2 79 25-110 3-81 (88)
329 2hgn_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 136.4 5.4 83 23-108 42-124 (139)
330 2cqh_A IGF-II mRNA-binding pro 99.6 2.8E-15 9.6E-20 124.7 7.7 80 23-109 4-85 (93)
331 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.6E-19 122.1 11.8 80 22-109 10-91 (99)
332 2xs2_A Deleted in azoospermia- 99.6 2.3E-15 8E-20 127.5 6.9 82 24-108 6-87 (102)
333 1sjr_A Polypyrimidine tract-bi 99.6 1.4E-14 4.8E-19 131.3 12.4 79 26-108 45-125 (164)
334 1x5p_A Negative elongation fac 99.6 6.1E-15 2.1E-19 123.7 9.3 76 307-389 13-88 (97)
335 1wf1_A RNA-binding protein RAL 99.6 3.7E-15 1.2E-19 128.2 8.0 74 308-388 26-100 (110)
336 3zzy_A Polypyrimidine tract-bi 99.6 6.7E-15 2.3E-19 128.5 9.6 76 310-389 29-107 (130)
337 1fjc_A Nucleolin RBD2, protein 99.6 3.6E-15 1.2E-19 124.8 6.9 81 23-108 12-92 (96)
338 3zzy_A Polypyrimidine tract-bi 99.5 2.9E-14 9.8E-19 124.5 11.8 78 27-109 28-108 (130)
339 2diu_A KIAA0430 protein; struc 99.5 5.7E-15 2E-19 119.2 6.7 72 309-389 8-85 (96)
340 2e44_A Insulin-like growth fac 99.5 6.2E-15 2.1E-19 123.4 7.2 79 308-389 14-93 (96)
341 2e5g_A U6 snRNA-specific termi 99.5 2.5E-14 8.5E-19 119.2 10.7 79 24-108 5-83 (94)
342 3beg_B Splicing factor, argini 99.5 5.7E-15 1.9E-19 128.0 6.7 74 308-387 15-93 (115)
343 2e5i_A Heterogeneous nuclear r 99.5 1.3E-14 4.6E-19 126.1 8.9 75 310-389 26-103 (124)
344 2dha_A FLJ20171 protein; RRM d 99.5 6.3E-15 2.2E-19 128.5 6.7 80 24-105 20-103 (123)
345 2e5g_A U6 snRNA-specific termi 99.5 1.1E-14 3.8E-19 121.3 7.4 76 308-388 7-82 (94)
346 2cq2_A Hypothetical protein LO 99.5 1.4E-14 4.8E-19 123.5 8.0 81 23-109 21-108 (114)
347 2j8a_A Histone-lysine N-methyl 99.5 1.1E-14 3.9E-19 124.3 7.2 78 28-105 3-94 (136)
348 3egn_A RNA-binding protein 40; 99.5 4.5E-15 1.5E-19 134.1 4.7 85 23-107 41-130 (143)
349 2e5i_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 120.0 12.9 75 28-108 26-103 (124)
350 2hzc_A Splicing factor U2AF 65 99.5 3E-14 1E-18 116.8 8.5 70 308-383 5-85 (87)
351 3beg_B Splicing factor, argini 99.5 2.8E-14 9.6E-19 123.6 8.3 74 25-105 14-92 (115)
352 2bz2_A Negative elongation fac 99.5 4.9E-14 1.7E-18 123.0 9.7 80 22-109 34-113 (121)
353 2voo_A Lupus LA protein; RNA-b 99.5 4.2E-14 1.4E-18 134.1 9.8 82 308-390 108-189 (193)
354 2bz2_A Negative elongation fac 99.5 2.4E-14 8.1E-19 125.0 7.3 78 306-390 36-113 (121)
355 2hzc_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 116.2 7.9 74 23-103 2-86 (87)
356 2dnl_A Cytoplasmic polyadenyla 99.5 3.5E-14 1.2E-18 122.8 8.0 79 24-105 5-86 (114)
357 3v4m_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 119.9 8.2 82 308-389 4-98 (105)
358 1wf0_A TDP-43, TAR DNA-binding 99.5 1.4E-14 4.8E-19 119.1 4.5 76 308-389 4-79 (88)
359 1jmt_A Splicing factor U2AF 35 99.5 2.2E-14 7.5E-19 121.5 5.4 72 314-385 20-103 (104)
360 1wf0_A TDP-43, TAR DNA-binding 99.5 2.4E-14 8.2E-19 117.7 5.3 78 25-109 3-80 (88)
361 2pe8_A Splicing factor 45; RRM 99.5 1.2E-13 4E-18 117.1 9.7 83 24-106 5-93 (105)
362 2dnl_A Cytoplasmic polyadenyla 99.5 3.9E-14 1.3E-18 122.5 6.8 78 308-388 7-88 (114)
363 3u1l_A PRE-mRNA-splicing facto 99.5 3.6E-14 1.2E-18 137.5 7.2 79 308-391 133-232 (240)
364 3d2w_A TAR DNA-binding protein 99.5 7.2E-14 2.5E-18 114.9 7.9 76 23-107 7-84 (89)
365 3ue2_A Poly(U)-binding-splicin 99.5 1.2E-13 4.1E-18 119.4 8.6 81 308-388 19-109 (118)
366 2voo_A Lupus LA protein; RNA-b 99.4 1.5E-13 5E-18 130.4 9.3 78 27-106 109-186 (193)
367 3u1l_A PRE-mRNA-splicing facto 99.4 2E-13 6.9E-18 132.2 9.5 81 23-109 130-231 (240)
368 2dit_A HIV TAT specific factor 99.4 3E-13 1E-17 116.5 8.7 80 307-389 13-103 (112)
369 2dit_A HIV TAT specific factor 99.4 1.8E-12 6E-17 111.6 11.6 84 23-110 11-105 (112)
370 3v4m_A Splicing factor U2AF 65 99.4 1.2E-12 4.2E-17 110.8 8.2 83 25-107 3-97 (105)
371 3ue2_A Poly(U)-binding-splicin 99.3 1.6E-12 5.6E-17 112.2 8.3 81 26-106 19-108 (118)
372 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.3E-16 103.2 12.6 78 26-110 9-93 (100)
373 1jmt_A Splicing factor U2AF 35 99.3 6.7E-13 2.3E-17 112.3 4.1 72 32-104 20-103 (104)
374 3s6e_A RNA-binding protein 39; 99.3 5E-12 1.7E-16 108.4 8.3 79 308-389 6-94 (114)
375 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.6E-12 1.9E-16 105.3 7.7 64 319-388 27-90 (100)
376 3tht_A Alkylated DNA repair pr 99.3 6.4E-12 2.2E-16 128.4 7.9 76 306-386 15-97 (345)
377 3tht_A Alkylated DNA repair pr 99.2 4.2E-11 1.5E-15 122.3 8.1 77 22-104 13-96 (345)
378 3s6e_A RNA-binding protein 39; 99.1 1.2E-10 4.1E-15 99.7 8.2 79 24-106 4-92 (114)
379 1owx_A Lupus LA protein, SS-B, 99.1 1.2E-10 4E-15 99.8 7.6 82 306-392 15-100 (121)
380 2dnr_A Synaptojanin-1; RRM dom 99.1 2.2E-10 7.4E-15 91.7 7.2 74 307-388 5-86 (91)
381 2dnr_A Synaptojanin-1; RRM dom 98.9 2.1E-09 7.2E-14 86.0 7.4 76 23-107 3-86 (91)
382 1owx_A Lupus LA protein, SS-B, 98.9 4.4E-09 1.5E-13 90.1 8.8 74 25-104 16-93 (121)
383 1ufw_A Synaptojanin 2; RNP dom 98.9 1.4E-09 4.7E-14 87.4 5.1 74 306-387 12-94 (95)
384 3dxb_A Thioredoxin N-terminall 98.9 2.8E-09 9.7E-14 103.4 8.0 71 319-389 139-214 (222)
385 1ufw_A Synaptojanin 2; RNP dom 98.8 2.7E-09 9.2E-14 85.7 4.4 76 20-104 8-92 (95)
386 3dxb_A Thioredoxin N-terminall 98.6 5.6E-08 1.9E-12 94.2 8.7 68 39-106 141-212 (222)
387 2l9w_A U4/U6 snRNA-associated- 98.4 9.3E-07 3.2E-11 72.2 9.2 71 309-384 21-96 (117)
388 2dhx_A Poly (ADP-ribose) polym 97.9 7.7E-05 2.6E-09 60.6 10.6 88 26-128 7-99 (104)
389 1wey_A Calcipressin 1; structu 97.8 2.8E-05 9.5E-10 63.6 5.7 74 309-387 5-83 (104)
390 1wey_A Calcipressin 1; structu 97.8 5.4E-05 1.8E-09 61.9 7.0 74 28-107 6-84 (104)
391 2l9w_A U4/U6 snRNA-associated- 97.7 6.9E-05 2.4E-09 61.3 7.3 72 25-102 19-95 (117)
392 1uw4_A UPF3X; nonsense mediate 97.7 0.00011 3.7E-09 59.1 7.7 69 28-96 2-72 (91)
393 2dhx_A Poly (ADP-ribose) polym 97.3 0.0012 4.3E-08 53.6 9.2 88 114-219 7-99 (104)
394 1whv_A Poly(A)-specific ribonu 97.2 0.0012 4.3E-08 52.8 7.6 56 26-90 15-70 (100)
395 2l08_A Regulator of nonsense t 97.1 0.00044 1.5E-08 55.9 4.1 71 26-96 8-80 (97)
396 1uw4_A UPF3X; nonsense mediate 96.9 0.0042 1.4E-07 49.9 8.5 66 310-375 2-70 (91)
397 1wwh_A Nucleoporin 35, nucleop 96.7 0.0034 1.2E-07 52.8 7.2 74 23-104 20-94 (119)
398 3ctr_A Poly(A)-specific ribonu 96.7 0.0017 5.7E-08 52.3 4.9 54 28-90 7-60 (101)
399 1wwh_A Nucleoporin 35, nucleop 96.4 0.017 5.7E-07 48.6 9.2 78 307-391 22-100 (119)
400 1whv_A Poly(A)-specific ribonu 96.4 0.0042 1.4E-07 49.8 5.0 54 310-371 17-70 (100)
401 3ctr_A Poly(A)-specific ribonu 96.0 0.0048 1.6E-07 49.6 3.6 54 310-371 7-60 (101)
402 3pq1_A Poly(A) RNA polymerase; 96.0 0.0053 1.8E-07 64.7 5.0 56 27-88 53-108 (464)
403 2l08_A Regulator of nonsense t 94.1 0.054 1.9E-06 43.6 4.6 67 116-182 10-79 (97)
404 3p3d_A Nucleoporin 53; structu 93.8 0.078 2.7E-06 45.1 5.2 77 310-388 8-99 (132)
405 3p3d_A Nucleoporin 53; structu 93.3 0.21 7.1E-06 42.5 7.0 79 115-195 7-100 (132)
406 3pq1_A Poly(A) RNA polymerase; 92.8 0.047 1.6E-06 57.5 2.9 55 310-369 54-108 (464)
407 3d45_A Poly(A)-specific ribonu 86.1 1.6 5.5E-05 46.8 8.2 56 27-91 440-495 (507)
408 3d45_A Poly(A)-specific ribonu 71.4 5.9 0.0002 42.4 6.7 53 311-371 442-494 (507)
409 4eyt_A Telomerase associated p 53.4 76 0.0026 24.5 9.2 79 308-393 11-96 (129)
410 2g0c_A ATP-dependent RNA helic 39.7 78 0.0027 23.5 6.4 58 38-104 12-74 (76)
411 4eyt_A Telomerase associated p 39.5 1.3E+02 0.0044 23.2 8.6 55 116-177 13-67 (129)
412 2g0c_A ATP-dependent RNA helic 34.3 23 0.00078 26.6 2.5 60 319-386 11-75 (76)
413 3j21_T 50S ribosomal protein L 32.1 1.1E+02 0.0038 23.7 6.1 58 29-89 24-83 (86)
414 2wx3_A MRNA-decapping enzyme 1 28.3 31 0.0011 23.7 2.0 21 594-614 18-38 (51)
415 3lcn_C MRNA transport factor G 27.8 76 0.0026 18.7 3.2 20 604-623 9-28 (29)
416 4e8u_A Putative uncharacterize 25.5 1.1E+02 0.0038 27.1 5.7 50 117-168 14-74 (172)
417 3h7h_B Transcription elongatio 24.3 89 0.003 25.3 4.5 34 53-91 40-73 (106)
418 1vq8_S 50S ribosomal protein L 24.0 1.1E+02 0.0039 23.6 4.8 55 29-86 23-79 (85)
419 1xn9_A 30S ribosomal protein S 23.0 1.9E+02 0.0064 23.2 6.1 49 37-86 28-81 (101)
420 3j21_T 50S ribosomal protein L 22.9 1.4E+02 0.0049 23.1 5.2 55 311-367 24-80 (86)
421 2wx4_A DCP1, decapping protein 22.4 32 0.0011 23.2 1.1 21 594-614 16-36 (46)
422 4bby_A Alkyldihydroxyacetoneph 21.1 81 0.0028 34.7 4.9 71 316-388 350-424 (658)
423 4e8u_A Putative uncharacterize 21.0 1.4E+02 0.0048 26.5 5.4 50 29-81 14-74 (172)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.3e-43 Score=361.63 Aligned_cols=255 Identities=22% Similarity=0.317 Sum_probs=230.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
++++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|.+|++.||+..|.|++|+|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 568999999999999999999999999 999988 3456899999999999999999999999999999999975
Q ss_pred CCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 006641 106 RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDK 184 (637)
Q Consensus 106 ~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~ 184 (637)
.+ .+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.+++..++|+
T Consensus 94 ~~--------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 TD--------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp CS--------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CC--------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 33 579999999999999999999999999999999887 899999999999999999999999999999999
Q ss_pred eeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHH
Q 006641 185 QVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264 (637)
Q Consensus 185 ~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av 264 (637)
.|.|.+..+.....
T Consensus 166 ~i~v~~a~~~~~~~------------------------------------------------------------------ 179 (284)
T 3smz_A 166 TLYVHWTDAGQLTP------------------------------------------------------------------ 179 (284)
T ss_dssp ECEEEECCGGGCCT------------------------------------------------------------------
T ss_pred EEEEEECCCCCCCc------------------------------------------------------------------
Confidence 99998865421100
Q ss_pred HHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCC-CHHHHHHHHhhcCCeEEEEEee
Q 006641 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI-NDEKLKELFSEFGTITSCKVMV 343 (637)
Q Consensus 265 ~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-t~e~L~~~F~~~G~i~~~~i~~ 343 (637)
.....++|||+|||.++ |+++|+++|+.||.|++|+|+.
T Consensus 180 ----------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 180 ----------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp ----------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred ----------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 00235679999999995 9999999999999999999999
Q ss_pred cCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchHHHHHHHHHhhhh
Q 006641 344 DQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ 401 (637)
Q Consensus 344 d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~ 401 (637)
|.+|+++|||||+|.+.++|.+|+..|||..++|++|+|.++++++.++.+..++...
T Consensus 220 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aa 277 (284)
T 3smz_A 220 GQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAA 277 (284)
T ss_dssp CSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHH
T ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHH
Confidence 9999999999999999999999999999999999999999999998888776665543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.9e-43 Score=358.92 Aligned_cols=252 Identities=19% Similarity=0.366 Sum_probs=215.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
...+++++|||+|||+++|+++|+++|+.||+|.+|++++|..+ ++|||||+|.+.++|.+|+ .+|+..|.|+.|+|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 35567899999999999999999999999999999999998754 4699999999999999999 59999999999999
Q ss_pred eeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccC-ceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCe
Q 006641 102 MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG-TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGML 180 (637)
Q Consensus 102 ~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G-~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 180 (637)
.|+. ..+|||+|||.++++++|+++|+.|| .|.+|.+..+..|.++|||||+|.+.++|..|++.|++..
T Consensus 113 ~~~~---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 113 SHLT---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp EECC---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EECC---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 9873 46899999999999999999999999 9999999998888899999999999999999999999999
Q ss_pred eCCeeeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHH
Q 006641 181 INDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260 (637)
Q Consensus 181 i~~~~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A 260 (637)
+.|+.|.|.+..+.......
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~------------------------------------------------------------ 203 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRT------------------------------------------------------------ 203 (292)
T ss_dssp ETTEECEEEECCCC------------------------------------------------------------------
T ss_pred eCCcEEEEEECCCCcccccc------------------------------------------------------------
Confidence 99999999886543221000
Q ss_pred HHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCC-CCHHHHHHHHhhcCCeEEE
Q 006641 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS-INDEKLKELFSEFGTITSC 339 (637)
Q Consensus 261 ~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~e~L~~~F~~~G~i~~~ 339 (637)
.......++|||+|||.+ +|+++|+++|++||.|++|
T Consensus 204 ------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v 241 (292)
T 2ghp_A 204 ------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKI 241 (292)
T ss_dssp ---------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEE
T ss_pred ------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEE
Confidence 001224568999999999 9999999999999999999
Q ss_pred EEeecCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 340 KVMVDQH--GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 340 ~i~~d~~--g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
+|+.+.. |.++|||||+|.+.++|.+|+ .|||..++|++|.|.|+++|
T Consensus 242 ~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 242 NIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999976 999999999999999999999 99999999999999999876
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.7e-34 Score=276.09 Aligned_cols=177 Identities=60% Similarity=1.006 Sum_probs=162.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
..++.++++|||+|||+++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++||+.+|+..+.|+.|+
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCe
Q 006641 101 IMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGML 180 (637)
Q Consensus 101 i~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 180 (637)
+.|+............+|||+|||+++++++|+++|+.||.|.+|+|+.+.. .++|||||+|.+.++|.+|++.||+..
T Consensus 89 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 89 IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp EEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 9999888777777788999999999999999999999999999999998864 489999999999999999999999999
Q ss_pred eCCeeeEEeeeehhhhhh
Q 006641 181 INDKQVYVGLFVRRQERA 198 (637)
Q Consensus 181 i~~~~l~V~~~~~~~~~~ 198 (637)
++|+.|.|.++.++.++.
T Consensus 168 ~~g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 168 LNDRKVFVGRFKSRKERE 185 (213)
T ss_dssp ETTEECEEEECCCHHHHH
T ss_pred ECCEEEEEEEcCCCcccc
Confidence 999999999998776553
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=1.1e-31 Score=261.29 Aligned_cols=174 Identities=34% Similarity=0.536 Sum_probs=157.0
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..++|||+|||+++|+++|+++|++||.|.+|.++++. .++++|||||+|.+.++|.+|++.+++..+.|+.+.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999986 58999999999999999999999999999999999998876
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEA 363 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A 363 (637)
...... .....+|||+||++++|+++|+++|++||.|++|+|+.|+ +.++|||||+|.+.++|
T Consensus 94 ~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 94 RDPSLR----------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCTHHH----------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHH
T ss_pred cccccc----------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHH
Confidence 544321 1134579999999999999999999999999999999986 45899999999999999
Q ss_pred HHHHHHhCCceeCCEEEEEEEccchHHHHHHH
Q 006641 364 TRALNEMNGKMIGRKPLYVAVAQRKEERKARL 395 (637)
Q Consensus 364 ~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~~~ 395 (637)
.+|++.|||..|+|++|+|.+|+++.++....
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 99999999999999999999999988776543
No 5
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.97 E-value=4.2e-32 Score=233.80 Aligned_cols=89 Identities=46% Similarity=0.749 Sum_probs=82.7
Q ss_pred cchhhhhcCChhhhhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhccccc
Q 006641 548 TLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSDVN 627 (637)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~ 627 (637)
.++++|+++++++||+||||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|++++...
T Consensus 53 l~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~~~~ 132 (144)
T 1g9l_A 53 LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQ 132 (144)
T ss_dssp CSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSSTTCC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcccch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999776666
Q ss_pred cccCCCCCC
Q 006641 628 EKLGSLAVN 636 (637)
Q Consensus 628 ~~~~~~~~~ 636 (637)
+.++++++.
T Consensus 133 ~~~~~~~~~ 141 (144)
T 1g9l_A 133 KAVNSATGV 141 (144)
T ss_dssp CCCSSSCSS
T ss_pred hhhcccccc
Confidence 677766654
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=242.31 Aligned_cols=164 Identities=27% Similarity=0.514 Sum_probs=155.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
++|||+|||+++|+++|+++|+.||+|.+|+++++.. ++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999986 568899999999999999999999999999999999999887
Q ss_pred CccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeee
Q 006641 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186 (637)
Q Consensus 108 ~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l 186 (637)
.........+|||+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.|++..++|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 77667778899999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred EEeeee
Q 006641 187 YVGLFV 192 (637)
Q Consensus 187 ~V~~~~ 192 (637)
.|.++.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 998864
No 7
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=4.6e-33 Score=217.29 Aligned_cols=77 Identities=64% Similarity=0.918 Sum_probs=73.6
Q ss_pred CcchhhhhcCChhhhhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhc
Q 006641 547 STLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAAR 623 (637)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~ 623 (637)
..+++.|++++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|+++
T Consensus 8 ~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~~ 84 (85)
T 2dyd_A 8 GALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQH 84 (85)
T ss_dssp TTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSSC
T ss_pred hhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhhc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999988753
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.1e-30 Score=246.71 Aligned_cols=175 Identities=18% Similarity=0.347 Sum_probs=152.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
...+..+++|||+|||+++||++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|.+|++. ++..|.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34556789999999999999999999999999999999999999999999999999999999999965 88899999999
Q ss_pred eeeccCCCcccc----CCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHH
Q 006641 101 IMYSHRDPSIRK----SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175 (637)
Q Consensus 101 i~~s~~~~~~~~----~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~ 175 (637)
|.|+........ ....+|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 999875533221 234689999999999999999999999999999999987 899999999999999999999987
Q ss_pred hcCCeeCCeeeEEeeeehhhhh
Q 006641 176 LNGMLINDKQVYVGLFVRRQER 197 (637)
Q Consensus 176 lng~~i~~~~l~V~~~~~~~~~ 197 (637)
++..++|+.|.|.++.++...
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp -SCCEETTEECEEEECC-----
T ss_pred -CCcEECCEEEEEEecCChhHh
Confidence 799999999999998877655
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=5.1e-30 Score=239.58 Aligned_cols=164 Identities=27% Similarity=0.512 Sum_probs=153.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
++++|||+|||+++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|.+|++.|++..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCC-
Q 006641 106 RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLIND- 183 (637)
Q Consensus 106 ~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~- 183 (637)
.... .....+|+|+|||.++++++|+++|+.||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|++..+.+
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 6543 3445789999999999999999999999999999999987 89999999999999999999999999999977
Q ss_pred -eeeEEeee
Q 006641 184 -KQVYVGLF 191 (637)
Q Consensus 184 -~~l~V~~~ 191 (637)
+.|.|.++
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 88888763
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=7e-30 Score=238.20 Aligned_cols=163 Identities=29% Similarity=0.562 Sum_probs=151.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
++++|||+|||++++|++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.|++|+|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 006641 106 RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDK 184 (637)
Q Consensus 106 ~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~ 184 (637)
.... .....+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 81 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 5543 3345689999999999999999999999999999999987 889999999999999999999999999999997
Q ss_pred e--eEEee
Q 006641 185 Q--VYVGL 190 (637)
Q Consensus 185 ~--l~V~~ 190 (637)
. |.|.|
T Consensus 159 ~~~i~v~~ 166 (167)
T 1fxl_A 159 TEPITVKF 166 (167)
T ss_dssp SSCCEEEE
T ss_pred ccceEEEe
Confidence 5 66665
No 11
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=3.5e-32 Score=215.67 Aligned_cols=78 Identities=28% Similarity=0.362 Sum_probs=74.7
Q ss_pred CcchhhhhcCChhhhhhhcccccchhhhc--cCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhcc
Q 006641 547 STLTSALASASPDDRTRMLGEQLYPLVEN--IEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARS 624 (637)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~ 624 (637)
..++++|++++|++||+||||+|||+|++ ++|++||||||||||||++|||+||+|+++|+.||+||++||++|+++.
T Consensus 6 p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~ 85 (92)
T 1ifw_A 6 PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 85 (92)
T ss_dssp SSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999 9999999999999999999999999999999999999999999999744
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=239.51 Aligned_cols=165 Identities=28% Similarity=0.498 Sum_probs=152.5
Q ss_pred ceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhh
Q 006641 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRA 286 (637)
Q Consensus 207 ~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~ 286 (637)
++|||+|||.++++++|+++|++||.|.++.+..+..++++|||||+|.+.++|.+|++.+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999999989999999999999999999999999999999999999886543
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHH
Q 006641 287 EREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATR 365 (637)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~ 365 (637)
. ......++|||+|||.++|+++|+++|++||.|.+++++.| .+|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 12335678999999999999999999999999999999998 578999999999999999999
Q ss_pred HHHHhCCceeCCEEEEEEEccc
Q 006641 366 ALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 366 A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
|+..|||..++|++|+|.||++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999974
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.1e-29 Score=247.57 Aligned_cols=170 Identities=22% Similarity=0.445 Sum_probs=153.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+++|||+|||+++||++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred CCCcc---------ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHH
Q 006641 106 RDPSI---------RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175 (637)
Q Consensus 106 ~~~~~---------~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~ 175 (637)
..... ......+|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 54321 12345689999999999999999999999999999999986 889999999999999999999999
Q ss_pred hcCCeeCCeeeEEeeeehhh
Q 006641 176 LNGMLINDKQVYVGLFVRRQ 195 (637)
Q Consensus 176 lng~~i~~~~l~V~~~~~~~ 195 (637)
|++..++|+.|.|.+...+.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999987653
No 14
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.5e-29 Score=246.58 Aligned_cols=177 Identities=25% Similarity=0.413 Sum_probs=156.0
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..++|||+|||+++++++|+++|+.||.|.++.++.+. +++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999886 68899999999999999999999999999999999999987
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~ 362 (637)
............ .......++|||+|||.++|+++|+++|++||.|++|+|+.+ .+|+++|||||+|.+.++
T Consensus 107 ~~~~~~~~~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 107 NIGQAQPIIDQL-------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCGGGHHHHHHH-------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccccchhhhhh-------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 765443322211 112345678999999999999999999999999999999998 478999999999999999
Q ss_pred HHHHHHHhCCceeCCEEEEEEEccch
Q 006641 363 ATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 363 A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
|.+|++.|||..|+|++|+|.++..+
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCC
Confidence 99999999999999999999999865
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.6e-29 Score=242.48 Aligned_cols=177 Identities=22% Similarity=0.427 Sum_probs=149.2
Q ss_pred CCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEec
Q 006641 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGR 281 (637)
Q Consensus 203 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~ 281 (637)
....++|||+|||+++++++|+++|+.||.|.++.++.+. .++++|||||+|.+.++|.+|++. ++..+.|+.|.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 3466899999999999999999999999999999999986 588999999999999999999966 88999999999999
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCH
Q 006641 282 AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMP 360 (637)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~ 360 (637)
+........ .......++|||+|||.++|+++|+++|++||.|++|+++.|. +|+++|||||+|.+.
T Consensus 89 ~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 876543221 1122345789999999999999999999999999999999995 789999999999999
Q ss_pred HHHHHHHHHhCCceeCCEEEEEEEccchHHHHH
Q 006641 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393 (637)
Q Consensus 361 ~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~ 393 (637)
++|.+|+.. ++..++|+.|.|.++.+++....
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 999999976 89999999999999999876643
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.3e-29 Score=235.63 Aligned_cols=165 Identities=24% Similarity=0.436 Sum_probs=149.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCC--CcccEEEEEecChHHHHHHHHHcCCCccC---Cccee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANAKEALNFMPIN---GKPIR 100 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~--~s~g~a~V~F~~~e~A~~Al~~ln~~~i~---g~~ir 100 (637)
++++|||+|||+++||++|+++|+.||+|.+|+++++..++ +++|||||+|.+.++|++|++.||+..+. ++.++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999999887 89999999999999999999999997775 67778
Q ss_pred eeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCe
Q 006641 101 IMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGML 180 (637)
Q Consensus 101 i~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 180 (637)
+.++..... ......+|||+|||.++++++|+++|+.||.|.++++..+.+|.++|||||+|.+.++|.+|++.||+..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 877754432 2234568999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eCC---eeeEEeee
Q 006641 181 IND---KQVYVGLF 191 (637)
Q Consensus 181 i~~---~~l~V~~~ 191 (637)
+.+ +.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 763 89999875
No 17
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.96 E-value=3.5e-32 Score=212.33 Aligned_cols=74 Identities=45% Similarity=0.751 Sum_probs=71.7
Q ss_pred cchhhhhcCChhhhhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 006641 548 TLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAA 621 (637)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~ 621 (637)
.++++|++++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|+
T Consensus 10 l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 10 NLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp TTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998775
No 18
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.96 E-value=4.3e-31 Score=208.41 Aligned_cols=78 Identities=51% Similarity=0.855 Sum_probs=74.5
Q ss_pred cchhhhhcCChhhhhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhccc
Q 006641 548 TLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSD 625 (637)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~ 625 (637)
.++++||+++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|+.||+||++||+.|++++.
T Consensus 7 l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 7 LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp CCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998763
No 19
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.2e-29 Score=232.90 Aligned_cols=162 Identities=34% Similarity=0.606 Sum_probs=149.9
Q ss_pred cceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccch
Q 006641 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 206 ~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~ 284 (637)
.++|||+|||+++++++|+++|+.||.|.++.++.+. +++++|||||+|.+.++|.+|++.+++..+.|+.+.+.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999987 789999999999999999999999999999999999998875
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHH
Q 006641 285 RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEA 363 (637)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A 363 (637)
... ....++|||+|||.++|+++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 432 2245789999999999999999999999999999999985 788999999999999999
Q ss_pred HHHHHHhCCceeCCEE--EEEEEc
Q 006641 364 TRALNEMNGKMIGRKP--LYVAVA 385 (637)
Q Consensus 364 ~~A~~~~~g~~~~g~~--l~V~~a 385 (637)
.+|++.|||..++|+. |+|+||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 888876
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=4.1e-29 Score=234.98 Aligned_cols=165 Identities=21% Similarity=0.434 Sum_probs=147.6
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCC---CcceeeEeecCCHHHHHHHHHHHcCCCCC---CcEEE
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG---KSRCFGFVNFQSPDAAAAAVEKLNGTTNN---DKVWY 278 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g---~srg~~FV~F~~~e~A~~Av~~lng~~~~---g~~l~ 278 (637)
..++|||+|||+++++++|+++|++||.|.++.++++..+ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3578999999999999999999999999999999998765 89999999999999999999999998765 56777
Q ss_pred EeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeC
Q 006641 279 VGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS 358 (637)
Q Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~ 358 (637)
+.++..... .....++|||+|||.++|+++|+++|++||.|++++++.+.+|+++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 776654322 123567899999999999999999999999999999999988999999999999
Q ss_pred CHHHHHHHHHHhCCceeC---CEEEEEEEcc
Q 006641 359 MPEEATRALNEMNGKMIG---RKPLYVAVAQ 386 (637)
Q Consensus 359 ~~~~A~~A~~~~~g~~~~---g~~l~V~~a~ 386 (637)
+.++|.+|++.|||..+. +++|+|+||+
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998775 4999999985
No 21
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.6e-29 Score=234.72 Aligned_cols=163 Identities=33% Similarity=0.543 Sum_probs=151.2
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
+.++|||+|||+++++++|+++|+.||.|.++.++.+. +++++|||||+|.+.++|.+|++.+++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999885 68899999999999999999999999999999999999987
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~ 362 (637)
.... ....++|||+|||.++|+++|+++|++||.|++++++.+. +++++|||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 5432 2346789999999999999999999999999999999986 89999999999999999
Q ss_pred HHHHHHHhCCceeCC--EEEEEEEc
Q 006641 363 ATRALNEMNGKMIGR--KPLYVAVA 385 (637)
Q Consensus 363 A~~A~~~~~g~~~~g--~~l~V~~a 385 (637)
|.+|++.|||..+.| ++|+|+||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999977 99999986
No 22
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.1e-29 Score=237.19 Aligned_cols=165 Identities=18% Similarity=0.443 Sum_probs=150.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
+++++|||+|||+++||++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++. ...+.|+.|++.|+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3578999999999999999999999999999999999999999999999999999999999974 46889999999998
Q ss_pred cCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCC
Q 006641 105 HRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLIND 183 (637)
Q Consensus 105 ~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~ 183 (637)
..... .....+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++ +++..++|
T Consensus 79 ~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 79 IPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred cchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 65432 2234689999999999999999999999999999999886 79999999999999999999998 89999999
Q ss_pred eeeEEeeeehh
Q 006641 184 KQVYVGLFVRR 194 (637)
Q Consensus 184 ~~l~V~~~~~~ 194 (637)
+.|.|.++.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999987654
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=3.1e-29 Score=234.02 Aligned_cols=163 Identities=26% Similarity=0.506 Sum_probs=147.9
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..++|||+|||+++|+++|+++|+.||.|.++.++++. +++++|||||+|.+.++|.+|++. +..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 35789999999999999999999999999999999985 689999999999999999999974 567889999888876
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~ 362 (637)
.+... ....+|||+|||.++|+++|+++|++||.|.+++++.|. +|+++|||||+|.+.++
T Consensus 80 ~~~~~------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQ------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHH------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhc------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 54321 135689999999999999999999999999999999984 79999999999999999
Q ss_pred HHHHHHHhCCceeCCEEEEEEEccch
Q 006641 363 ATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 363 A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
|.+|++ +++..++|++|+|.+|+++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999996 8999999999999999876
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2.9e-29 Score=236.22 Aligned_cols=168 Identities=18% Similarity=0.287 Sum_probs=151.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
...+.++++|||+|||.++|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+|+ +||+..|.|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 84 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIK 84 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEE
Confidence 445667899999999999999999999999998766 44556667788999999999999999999 5999999999999
Q ss_pred eeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCe
Q 006641 101 IMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGML 180 (637)
Q Consensus 101 i~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 180 (637)
|.|+............+|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++..
T Consensus 85 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 85 LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp EECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred EecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 999987766666667899999999999999999999999988765 5688999999999999999999999999999
Q ss_pred eCCeeeEEeeeehh
Q 006641 181 INDKQVYVGLFVRR 194 (637)
Q Consensus 181 i~~~~l~V~~~~~~ 194 (637)
++|+.|.|.++.++
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999987654
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=5e-28 Score=233.05 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=135.7
Q ss_pred CCCcEEEEcCCC-CCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 25 YGNVSLYVGDLE-QNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 25 ~~~~~L~V~nLp-~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
.++++|||+||| .++|+++|+++|+.||.|.+|+|.+++ +|||||+|.+.++|++||+.||+..+.|++|+|.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 799999999999999999999998764 38999999999999999999999999999999999
Q ss_pred ccCCCcc-----------------------cc------------CCCccEEEeCCCccccHHHHHhHhhccCce--eEEE
Q 006641 104 SHRDPSI-----------------------RK------------SGYGNVFIKNLDTSIDNKALCDTFAAFGTV--LSCK 146 (637)
Q Consensus 104 s~~~~~~-----------------------~~------------~~~~~i~V~nLp~~it~~~L~~~F~~~G~I--~s~~ 146 (637)
+...... +. ....+|||+|||+++++++|+++|+.||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 8643210 00 113469999999999999999999999999 8999
Q ss_pred EeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 006641 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDK 184 (637)
Q Consensus 147 v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~ 184 (637)
+..+. +.++|+|||+|.+.++|..|+..||+..+.+.
T Consensus 157 ~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 157 VFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp ECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred EEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 88765 55679999999999999999999999999776
No 26
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.2e-27 Score=224.47 Aligned_cols=158 Identities=25% Similarity=0.478 Sum_probs=144.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQV----A-------QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~----G-------~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
+++++|||+|||+++||++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .||+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999999999 6 7888877654 489999999999999999 999999
Q ss_pred cCCcceeeeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHH
Q 006641 94 INGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172 (637)
Q Consensus 94 i~g~~iri~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~A 172 (637)
|.|++|+|.|+..... .....+|||+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|
T Consensus 75 ~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999999865432 3446789999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHhcCCeeCCeeeEEeee
Q 006641 173 IKMLNGMLINDKQVYVGLF 191 (637)
Q Consensus 173 i~~lng~~i~~~~l~V~~~ 191 (637)
++.|++..++|+.|.|.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999875
No 27
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.4e-27 Score=243.09 Aligned_cols=173 Identities=19% Similarity=0.328 Sum_probs=159.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
..+++|||+|||+++|+++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCccc-cCCCccEEEeCCCccc-cHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeC
Q 006641 105 HRDPSIR-KSGYGNVFIKNLDTSI-DNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN 182 (637)
Q Consensus 105 ~~~~~~~-~~~~~~i~V~nLp~~i-t~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 182 (637)
....... .....+|||+|||.++ ++++|+++|+.||.|.+|++..+.+|.++|+|||+|.+.++|.+|++.|++..++
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 7654322 2345789999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEeeeehhhhh
Q 006641 183 DKQVYVGLFVRRQER 197 (637)
Q Consensus 183 ~~~l~V~~~~~~~~~ 197 (637)
|+.|.|.++.++..+
T Consensus 253 g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 253 GSHLRVSFCAPGPPG 267 (284)
T ss_dssp TEECEEEECCSSSCH
T ss_pred CeEEEEEEecCCCcc
Confidence 999999998776543
No 28
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.9e-27 Score=239.47 Aligned_cols=164 Identities=25% Similarity=0.430 Sum_probs=145.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLY----DLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK 97 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~----~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~ 97 (637)
+...++++|||+|||+++||++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345678999999999999999966 9999999999999987 566889999999999999999999999999999
Q ss_pred ceeeeeccCCCcc-------------------------------------------------------------------
Q 006641 98 PIRIMYSHRDPSI------------------------------------------------------------------- 110 (637)
Q Consensus 98 ~iri~~s~~~~~~------------------------------------------------------------------- 110 (637)
.|+|.|+..+...
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999998764420
Q ss_pred ------------------------------------------ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEe
Q 006641 111 ------------------------------------------RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148 (637)
Q Consensus 111 ------------------------------------------~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~ 148 (637)
......+|||+|||.++++++|+++|+.||.|.+|++.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 01123569999999999999999999999999999998
Q ss_pred ECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeC-CeeeEEeeee
Q 006641 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN-DKQVYVGLFV 192 (637)
Q Consensus 149 ~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-~~~l~V~~~~ 192 (637)
.+. +|||||+|.+.++|.+|++.||+..+. ++.|.|.|..
T Consensus 241 ~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 543 589999999999999999999999999 9999998864
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.6e-27 Score=227.51 Aligned_cols=163 Identities=23% Similarity=0.432 Sum_probs=144.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQV----A-------QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~----G-------~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
..+++|||+|||+++||++|+++|+.| | .|.++++. +++|||||+|.+.++|++|+ .||+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 457899999999999999999999999 5 66666664 34589999999999999999 899999
Q ss_pred cCCcceeeeeccCCCcc------------------ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCC
Q 006641 94 INGKPIRIMYSHRDPSI------------------RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQ 154 (637)
Q Consensus 94 i~g~~iri~~s~~~~~~------------------~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~ 154 (637)
|.|+.|+|.|+...... ......+|||+|||.++++++|+++|+.||.|.+|++..+. +|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999998654211 11345789999999999999999999999999999999996 899
Q ss_pred ceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehh
Q 006641 155 SKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194 (637)
Q Consensus 155 skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~ 194 (637)
++|||||+|.+.++|.+|++.|++..++|+.|.|.++.++
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999999999999987654
No 30
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=3.2e-29 Score=183.65 Aligned_cols=60 Identities=42% Similarity=0.742 Sum_probs=59.1
Q ss_pred hhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 006641 561 RTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEA 620 (637)
Q Consensus 561 ~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~ 620 (637)
||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999999999999999987
No 31
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=4.2e-28 Score=233.59 Aligned_cols=176 Identities=18% Similarity=0.214 Sum_probs=142.9
Q ss_pred ccceEEecCCC-ccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLA-ETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp-~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..++|||+||+ +.+++++|+++|++||.|.+|.++++ ++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 89999999999999999999999875 37899999999999999999999999999999999875
Q ss_pred hhhhHHHH---HH------HHHHHhhhh----------hhhhcccccccccCCCCCCCHHHHHHHHhhcCCe--EEEEEe
Q 006641 284 KRAEREAD---LR------AKFEQERIS----------RYEKLKGANLYLKNLDDSINDEKLKELFSEFGTI--TSCKVM 342 (637)
Q Consensus 284 ~~~~~~~~---~~------~~~~~~~~~----------~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i--~~~~i~ 342 (637)
........ .. ..+...... .....++.+|||+|||+++|+++|+++|++||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43210000 00 000000000 0011356789999999999999999999999999 899999
Q ss_pred ecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE----EEEEEEc
Q 006641 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK----PLYVAVA 385 (637)
Q Consensus 343 ~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~----~l~V~~a 385 (637)
.+. +.++|||||+|.+.++|.+|+..|||..+.|+ ++.|+|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 886 55679999999999999999999999999876 6888775
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=3.3e-28 Score=229.00 Aligned_cols=165 Identities=24% Similarity=0.353 Sum_probs=145.5
Q ss_pred CCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEecc
Q 006641 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA 282 (637)
Q Consensus 203 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~ 282 (637)
....++|||+|||+++++++|+++|+.||.+..+.+.....++++|||||+|.+.++|.+|+ .+++..+.|+.|.+.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 34678999999999999999999999999876644444456789999999999999999999 59999999999999998
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHH
Q 006641 283 QKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~ 362 (637)
..+... .....++|||+|||.++|+++|+++|++||.|..+ +.++.++|||||+|.+.++
T Consensus 89 ~~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 89 KGRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp CCSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHH
T ss_pred CCcccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHH
Confidence 765321 12346789999999999999999999999988876 6678899999999999999
Q ss_pred HHHHHHHhCCceeCCEEEEEEEccch
Q 006641 363 ATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 363 A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
|.+|+..|||..++|++|+|.+++++
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999875
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.8e-27 Score=221.92 Aligned_cols=158 Identities=24% Similarity=0.457 Sum_probs=142.5
Q ss_pred ccceEEecCCCccCCHHHHHHhhccc----C-------CeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCC
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHF----G-------TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNN 273 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~----G-------~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~ 273 (637)
..++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 45899999999999999999999999 6 66666664 34789999999999999999 89999999
Q ss_pred CcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccE
Q 006641 274 DKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGS 352 (637)
Q Consensus 274 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~ 352 (637)
|+.+.+.++..... ....++|||+|||.++|+++|+++|++||.|.+++++.+. +|+++||
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999998765321 1235789999999999999999999999999999999994 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 353 GFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 353 afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
|||+|.+.++|.+|++.|||..++|++|.|.+|.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999973
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.9e-27 Score=239.45 Aligned_cols=178 Identities=24% Similarity=0.393 Sum_probs=148.0
Q ss_pred CccceEEecCCCccCCHHHHH----HhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEE
Q 006641 204 PKFTNVYVNNLAETVTDEDLK----KIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYV 279 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~----~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v 279 (637)
...++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.+++..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 456899999999999999976 8999999999998876 6789999999999999999999999999999999999
Q ss_pred eccchhhhHHHHHHHHHH-------H-----------hhh----------------------------------------
Q 006641 280 GRAQKRAEREADLRAKFE-------Q-----------ERI---------------------------------------- 301 (637)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~-------~-----------~~~---------------------------------------- 301 (637)
.++............... . ...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998665432111000000 0 000
Q ss_pred -----------------------------------hhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC
Q 006641 302 -----------------------------------SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH 346 (637)
Q Consensus 302 -----------------------------------~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~ 346 (637)
.......+++|||+|||.++|+++|+++|++||.|++|+++.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 00112245779999999999999999999999999999999764
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEccc
Q 006641 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIG-RKPLYVAVAQR 387 (637)
Q Consensus 347 g~~~g~afV~f~~~~~A~~A~~~~~g~~~~-g~~l~V~~a~~ 387 (637)
+|||||+|.+.++|.+|++.|||..++ |+.|+|.|+++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 689999999999999999999999999 99999999873
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=6.4e-27 Score=230.19 Aligned_cols=162 Identities=23% Similarity=0.295 Sum_probs=144.1
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 23 SGYGNVSLYVGDLEQ-NVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~-~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
+..++++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345689999999999 99999999999999999999999987 389999999999999999999999999999999
Q ss_pred eeccCCCccc---------------------------------cCCCccEEEeCCCccccHHHHHhHhhccC-ceeEEEE
Q 006641 102 MYSHRDPSIR---------------------------------KSGYGNVFIKNLDTSIDNKALCDTFAAFG-TVLSCKV 147 (637)
Q Consensus 102 ~~s~~~~~~~---------------------------------~~~~~~i~V~nLp~~it~~~L~~~F~~~G-~I~s~~v 147 (637)
.|+....... .....+|||+|||.++++++|+++|+.|| .|.++++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 9986441110 01146799999999999999999999999 9999998
Q ss_pred eECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeC-CeeeEEeeeeh
Q 006641 148 AIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN-DKQVYVGLFVR 193 (637)
Q Consensus 148 ~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-~~~l~V~~~~~ 193 (637)
+.+ ++|||||+|.+.++|.+|++.|++..+. ++.|.|.+..+
T Consensus 185 ~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 185 FQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 753 4789999999999999999999999999 99999998754
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.9e-26 Score=231.45 Aligned_cols=160 Identities=25% Similarity=0.446 Sum_probs=145.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.....+++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||.|.+.++|.+|++.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34456789999999999999999999999999999999654 489999999999999999999999999999999
Q ss_pred eeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHh-cCCe
Q 006641 102 MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKML-NGML 180 (637)
Q Consensus 102 ~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~l-ng~~ 180 (637)
.|+.. ..+|||+|||..+++++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|++.+ ++..
T Consensus 91 ~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 91 RFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp EECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred eeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 99864 35799999999999999999999999999999999999999999999999999999999999 4555
Q ss_pred eC---CeeeEEeeeehhh
Q 006641 181 IN---DKQVYVGLFVRRQ 195 (637)
Q Consensus 181 i~---~~~l~V~~~~~~~ 195 (637)
+. ++.+.|.+.....
T Consensus 163 ~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp ESSSSCCBCEEEECCCEE
T ss_pred EecCCCceEEEeeccccC
Confidence 54 8999998876543
No 37
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.1e-26 Score=237.55 Aligned_cols=167 Identities=21% Similarity=0.386 Sum_probs=146.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
.+++|||+|||+++++++|+++|+.|| .|.+|++.++.. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999999886 678899999999999999999999999999999999998
Q ss_pred cCCCccc-----cCCCccEEEeCCCcc-ccHHHHHhHhhccCceeEEEEeECCC--CCceeEEEEEecCHHHHHHHHHHh
Q 006641 105 HRDPSIR-----KSGYGNVFIKNLDTS-IDNKALCDTFAAFGTVLSCKVAIDSN--GQSKGYGFVQFENEEAAQNAIKML 176 (637)
Q Consensus 105 ~~~~~~~-----~~~~~~i~V~nLp~~-it~~~L~~~F~~~G~I~s~~v~~~~~--g~skg~afV~F~~~e~A~~Ai~~l 176 (637)
....... .....+|||+|||.+ +++++|+++|+.||.|.+|++..+.+ |.++|||||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 7554322 234578999999999 99999999999999999999998876 999999999999999999999 99
Q ss_pred cCCeeCCeeeEEeeeehh
Q 006641 177 NGMLINDKQVYVGLFVRR 194 (637)
Q Consensus 177 ng~~i~~~~l~V~~~~~~ 194 (637)
|+..++|+.|.|.++.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999997654
No 38
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=9.8e-27 Score=223.44 Aligned_cols=179 Identities=22% Similarity=0.392 Sum_probs=146.0
Q ss_pred ccceEEecCCCccCCHHHHHHhhccc----C-------CeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCC
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHF----G-------TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNN 273 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~----G-------~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~ 273 (637)
..++|||+|||+++++++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 35789999999999999999999999 4 5555554 456899999999999999999 89999999
Q ss_pred CcEEEEeccchhhhHHHHHHHH--HHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcc
Q 006641 274 DKVWYVGRAQKRAEREADLRAK--FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSK 350 (637)
Q Consensus 274 g~~l~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~ 350 (637)
|+.|.+.++............. ..............++|||+|||.++|+++|+++|++||.|.+|+++.+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999886542110000000 00000001112456889999999999999999999999999999999995 89999
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 351 GSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 351 g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
|||||+|.+.++|.+|++.|||..++|+.|+|.+++++.
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999999998763
No 39
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1.5e-26 Score=222.24 Aligned_cols=158 Identities=23% Similarity=0.276 Sum_probs=141.8
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 27 NVSLYVGDLEQ-NVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 27 ~~~L~V~nLp~-~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.||+..|.|+.|+|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999999886 3899999999999999999999999999999999987
Q ss_pred CCCccc---------------------------------cCCCccEEEeCCCccccHHHHHhHhhccC-ceeEEEEeECC
Q 006641 106 RDPSIR---------------------------------KSGYGNVFIKNLDTSIDNKALCDTFAAFG-TVLSCKVAIDS 151 (637)
Q Consensus 106 ~~~~~~---------------------------------~~~~~~i~V~nLp~~it~~~L~~~F~~~G-~I~s~~v~~~~ 151 (637)
...... .....+|||+|||.++++++|+++|+.|| .|.++++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 542110 01256799999999999999999999999 9999998754
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhcCCeeC-CeeeEEeeeeh
Q 006641 152 NGQSKGYGFVQFENEEAAQNAIKMLNGMLIN-DKQVYVGLFVR 193 (637)
Q Consensus 152 ~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-~~~l~V~~~~~ 193 (637)
++|+|||+|.+.++|.+|++.|++..++ ++.|.|.+..+
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4789999999999999999999999999 99999998754
No 40
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=4.1e-26 Score=229.00 Aligned_cols=158 Identities=29% Similarity=0.537 Sum_probs=145.2
Q ss_pred CCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEecc
Q 006641 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA 282 (637)
Q Consensus 203 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~ 282 (637)
....++|||+|||+++|+++|+++|+.||.|.++.+.+ ++|||||.|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35668999999999999999999999999999999854 4789999999999999999999999999999999987
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHH
Q 006641 283 QKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~ 362 (637)
.. +++|||+|||..+|+++|+++|+.||.|.+|+|+.|.+|+++|||||+|.+.++
T Consensus 94 ~~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 TH------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CC------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred cc------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 53 457999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceeC---CEEEEEEEccchH
Q 006641 363 ATRALNEM-NGKMIG---RKPLYVAVAQRKE 389 (637)
Q Consensus 363 A~~A~~~~-~g~~~~---g~~l~V~~a~~~~ 389 (637)
|.+|+..| ++..+. +++|.|.++...+
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999999 455555 9999999998653
No 41
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.1e-26 Score=228.64 Aligned_cols=178 Identities=21% Similarity=0.304 Sum_probs=146.7
Q ss_pred CCccceEEecCCCc-cCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEec
Q 006641 203 SPKFTNVYVNNLAE-TVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGR 281 (637)
Q Consensus 203 ~~~~~~lfV~nLp~-~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~ 281 (637)
....++|||+|||+ ++++++|+++|+.||.|.++.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999 99999999999999999999998875 77999999999999999999999999999999998
Q ss_pred cchhhhHH-------HHHHHHHHHh----------hhhhhhhcccccccccCCCCCCCHHHHHHHHhhcC-CeEEEEEee
Q 006641 282 AQKRAERE-------ADLRAKFEQE----------RISRYEKLKGANLYLKNLDDSINDEKLKELFSEFG-TITSCKVMV 343 (637)
Q Consensus 282 ~~~~~~~~-------~~~~~~~~~~----------~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G-~i~~~~i~~ 343 (637)
+....... ......+... ........++++|||+|||.++|+++|+++|++|| .|.+|+++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 86431100 0000000000 00001123468899999999999999999999999 999999976
Q ss_pred cCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEccch
Q 006641 344 DQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG-RKPLYVAVAQRK 388 (637)
Q Consensus 344 d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~-g~~l~V~~a~~~ 388 (637)
+ ++|||||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4 3799999999999999999999999999 999999999864
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=7.8e-26 Score=217.31 Aligned_cols=175 Identities=22% Similarity=0.312 Sum_probs=144.5
Q ss_pred cceEEecCCCc-cCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccch
Q 006641 206 FTNVYVNNLAE-TVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 206 ~~~lfV~nLp~-~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~ 284 (637)
.++|||+|||+ ++++++|+++|+.||.|.++.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 47899999999 99999999999999999999998875 67999999999999999999999999999999998864
Q ss_pred hhhHHHHHH-------HHHHHhhhhh----------hhhcccccccccCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCC
Q 006641 285 RAEREADLR-------AKFEQERISR----------YEKLKGANLYLKNLDDSINDEKLKELFSEFG-TITSCKVMVDQH 346 (637)
Q Consensus 285 ~~~~~~~~~-------~~~~~~~~~~----------~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G-~i~~~~i~~d~~ 346 (637)
......... ..+......+ ....++++|||+|||.++|+++|+++|++|| .|.+|+++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~- 157 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD- 157 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-
Confidence 321100000 0000000000 0113477899999999999999999999999 99999998653
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEccch
Q 006641 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIG-RKPLYVAVAQRK 388 (637)
Q Consensus 347 g~~~g~afV~f~~~~~A~~A~~~~~g~~~~-g~~l~V~~a~~~ 388 (637)
+|||||+|.+.++|.+|+..|||..++ |++|+|.|++++
T Consensus 158 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 ---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 799999999999999999999999999 999999999864
No 43
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=4.5e-21 Score=176.97 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=111.9
Q ss_pred EEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhccccccccc
Q 006641 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLK 315 (637)
Q Consensus 236 v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 315 (637)
+.++.+.. +++||+||+|.+.++|++|++.+++.......+.+........... ..............++|||+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEEe
Confidence 44555543 6899999999999999999988876443333333322211100000 00000011123456789999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 316 NLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 316 nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
|||+++|+++|+++|++||.|++|+|+.|. +|+++|||||+|.+.++|.+|++.|||..++|++|+|.+++++.
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999999994 89999999999999999999999999999999999999998653
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=9.7e-21 Score=164.60 Aligned_cols=104 Identities=26% Similarity=0.496 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+.+|||+|||+++||++|+++|+.||.|.+|+|++|.. +++|||||+|.+.++|++||+.||+..|.|+.|+|.|+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 467899999999999999999999999999999999964 478999999999999999999999999999999999986
Q ss_pred CCCc------cccCCCccEEEeCCCccccHHH
Q 006641 106 RDPS------IRKSGYGNVFIKNLDTSIDNKA 131 (637)
Q Consensus 106 ~~~~------~~~~~~~~i~V~nLp~~it~~~ 131 (637)
.... .+.....+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 5432 1223346799999999999864
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=154.72 Aligned_cols=82 Identities=32% Similarity=0.586 Sum_probs=78.0
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
...+++|||+|||.++|+++|+++|++||.|.+|+|++|+ +|+++|||||+|.+.++|.+|++.|||..++|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3568899999999999999999999999999999999985 799999999999999999999999999999999999999
Q ss_pred ccc
Q 006641 385 AQR 387 (637)
Q Consensus 385 a~~ 387 (637)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=152.92 Aligned_cols=89 Identities=10% Similarity=0.228 Sum_probs=82.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+||++++|+++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999995 6999999999999999999999999999999999999999
Q ss_pred cchHHHHHHH
Q 006641 386 QRKEERKARL 395 (637)
Q Consensus 386 ~~~~~~~~~~ 395 (637)
..++.++...
T Consensus 84 ~~~~~~~~~~ 93 (110)
T 3s8s_A 84 IKGQQRMKYY 93 (110)
T ss_dssp STTHHHHHHH
T ss_pred CCCcHHHHHH
Confidence 9887766543
No 47
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.7e-19 Score=164.97 Aligned_cols=138 Identities=14% Similarity=0.264 Sum_probs=112.0
Q ss_pred EEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc-c------CCcceeeeeccCC----CccccCCCccEEEeCCC
Q 006641 56 SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP-I------NGKPIRIMYSHRD----PSIRKSGYGNVFIKNLD 124 (637)
Q Consensus 56 ~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~-i------~g~~iri~~s~~~----~~~~~~~~~~i~V~nLp 124 (637)
+++|.++.. +++|||||+|.+.++|++|++.++... + .+......+.... .........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 577888876 588999999999999999998876422 2 2222222222111 11122335789999999
Q ss_pred ccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhh
Q 006641 125 TSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ 195 (637)
Q Consensus 125 ~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~ 195 (637)
+++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|..|++.||+..++|+.|.|.++.++.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999986 89999999999999999999999999999999999999987653
No 48
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=151.49 Aligned_cols=82 Identities=34% Similarity=0.582 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
...++|||+|||+++||++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 006641 105 HR 106 (637)
Q Consensus 105 ~~ 106 (637)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 63
No 49
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=1.5e-19 Score=165.19 Aligned_cols=138 Identities=17% Similarity=0.262 Sum_probs=112.9
Q ss_pred CCcceeeEeecCCHHHHHHHHHHH-cCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCC
Q 006641 244 GKSRCFGFVNFQSPDAAAAAVEKL-NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322 (637)
Q Consensus 244 g~srg~~FV~F~~~e~A~~Av~~l-ng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 322 (637)
...+|+++|+|.+.++|++|++.+ |+..++| .+.+.++..+........ ..............++|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCC
Confidence 357899999999999999999999 9999999 999988765322100000 000000112234568899999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 323 ~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
+++|+++|++||.|.+|+++.| ++|||||+|.+.++|.+|+..|||..++|++|+|.+++++
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999987 5899999999999999999999999999999999999865
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3e-19 Score=155.19 Aligned_cols=108 Identities=58% Similarity=0.956 Sum_probs=75.5
Q ss_pred CCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeeh
Q 006641 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVR 193 (637)
Q Consensus 114 ~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~ 193 (637)
+.++|||+|||+++++++|+++|+.||.|.+|+|+.+.. .++|||||+|.+.++|.+|++.|++..++|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999999999998864 4899999999999999999999999999999999999876
Q ss_pred hhhhhhc--cCCCccceEEecCCCccCCHHH
Q 006641 194 RQERAQQ--NVSPKFTNVYVNNLAETVTDED 222 (637)
Q Consensus 194 ~~~~~~~--~~~~~~~~lfV~nLp~~~tee~ 222 (637)
+..+... ......++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 5544222 2235668899999999999864
No 51
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=7.7e-19 Score=171.52 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=78.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcC--CeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFG--TITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G--~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..++|||+||++++|+++|+++|++|| .|++|+|+.|+ ++++||||||+|.+.++|.+||+.||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999994 899999999999999999999999999999999999999
Q ss_pred ccchHHHH
Q 006641 385 AQRKEERK 392 (637)
Q Consensus 385 a~~~~~~~ 392 (637)
++++....
T Consensus 147 a~~~~~~~ 154 (229)
T 3q2s_C 147 VNKQFLSQ 154 (229)
T ss_dssp CCHHHHHH
T ss_pred CCCCccch
Confidence 99876544
No 52
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=2.3e-18 Score=157.26 Aligned_cols=124 Identities=20% Similarity=0.242 Sum_probs=109.9
Q ss_pred CCcccEEEEEecChHHHHHHHHHc-CCCccCCcceeeeeccCC--------------CccccCCCccEEEeCCCccccHH
Q 006641 66 RSSLGYAYVNYSNPQDAANAKEAL-NFMPINGKPIRIMYSHRD--------------PSIRKSGYGNVFIKNLDTSIDNK 130 (637)
Q Consensus 66 ~~s~g~a~V~F~~~e~A~~Al~~l-n~~~i~g~~iri~~s~~~--------------~~~~~~~~~~i~V~nLp~~it~~ 130 (637)
.+.+|+++|+|.+.++|++|++.+ |+..|.| .+++.++... ........++|||+|||++++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 356799999999999999999999 9999999 9999987652 12233445789999999999999
Q ss_pred HHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehh
Q 006641 131 ALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194 (637)
Q Consensus 131 ~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~ 194 (637)
+|+++|+.||.|.+|++..+ ++|||||+|.+.++|..|++.||+..+.|+.|.|.+..++
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999865 6899999999999999999999999999999999987653
No 53
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=146.74 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
.+.++|||+|||++++|++|+++|+.||.|.+|+|++|..|++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 006641 105 HRD 107 (637)
Q Consensus 105 ~~~ 107 (637)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=142.68 Aligned_cols=90 Identities=23% Similarity=0.406 Sum_probs=82.9
Q ss_pred cCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC
Q 006641 16 ATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN 95 (637)
Q Consensus 16 ~~~~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~ 95 (637)
++..+.....++++|||+|||+++++++|+++|+.||+|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.
T Consensus 5 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 5 SSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34444555667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccceeeeecc
Q 006641 96 GKPIRIMYSH 105 (637)
Q Consensus 96 g~~iri~~s~ 105 (637)
|++|+|.|++
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-18 Score=143.13 Aligned_cols=90 Identities=27% Similarity=0.527 Sum_probs=83.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
......+++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcc
Q 006641 101 IMYSHRDPSI 110 (637)
Q Consensus 101 i~~s~~~~~~ 110 (637)
|.|+......
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999876544
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=9.5e-19 Score=145.05 Aligned_cols=83 Identities=28% Similarity=0.389 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC-CCccCCcceeeeec
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN-FMPINGKPIRIMYS 104 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln-~~~i~g~~iri~~s 104 (637)
|.+|||+|||+++||++|+++|+.|| +|.+|+|++|+.|++++|||||+|.+.++|++||+.++ +..|.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999998874 56799999999999
Q ss_pred cCCCc
Q 006641 105 HRDPS 109 (637)
Q Consensus 105 ~~~~~ 109 (637)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=142.58 Aligned_cols=90 Identities=29% Similarity=0.464 Sum_probs=83.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|||+++++++|+++|+.||+|.+|+++++..+++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCccc
Q 006641 102 MYSHRDPSIR 111 (637)
Q Consensus 102 ~~s~~~~~~~ 111 (637)
.|+......+
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x5s_A 87 DQAGKSSDNR 96 (102)
T ss_dssp EEEECCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765443
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.3e-17 Score=144.88 Aligned_cols=92 Identities=24% Similarity=0.439 Sum_probs=84.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
......+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCccc
Q 006641 100 RIMYSHRDPSIR 111 (637)
Q Consensus 100 ri~~s~~~~~~~ 111 (637)
+|.|+...+...
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999998765543
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=5.6e-18 Score=150.02 Aligned_cols=89 Identities=31% Similarity=0.419 Sum_probs=82.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
....+.++++|||+|||+++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++||+.||+..|.|++|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCC
Q 006641 100 RIMYSHRDP 108 (637)
Q Consensus 100 ri~~s~~~~ 108 (637)
+|.|+..+.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999997643
No 60
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=139.42 Aligned_cols=85 Identities=26% Similarity=0.465 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
..++++|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 006641 104 SHRDP 108 (637)
Q Consensus 104 s~~~~ 108 (637)
+.+.|
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 97653
No 61
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=144.73 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=74.0
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcC-CeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhC-CceeCCEEEEEEEcc
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFG-TITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMN-GKMIGRKPLYVAVAQ 386 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G-~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~-g~~~~g~~l~V~~a~ 386 (637)
.+|||+|||.++|+++|+++|++|| .|++|+|++|+ +|++||||||+|.+.++|.+|++.++ +..++|++|+|.+|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999985 78999999999999999999999885 567999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=139.27 Aligned_cols=86 Identities=27% Similarity=0.493 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
+.++++|||+|||.++++++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 006641 104 SHRDPS 109 (637)
Q Consensus 104 s~~~~~ 109 (637)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976544
No 63
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=143.95 Aligned_cols=83 Identities=19% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCC----ccCCc
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVA--QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFM----PINGK 97 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G--~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~----~i~g~ 97 (637)
.....||||+|||+++||++|+++|++|| .|.+|++++|+.|++++|||||+|.+.++|++|++.||+. .|.||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 44578999999999999999999999999 4779999999999999999999999999999999999986 48999
Q ss_pred ceeeeeccC
Q 006641 98 PIRIMYSHR 106 (637)
Q Consensus 98 ~iri~~s~~ 106 (637)
+|+|.|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=140.51 Aligned_cols=87 Identities=31% Similarity=0.402 Sum_probs=81.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
....+.++++|||+|||+++++++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccC
Q 006641 100 RIMYSHR 106 (637)
Q Consensus 100 ri~~s~~ 106 (637)
+|.|+..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 65
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=5.9e-18 Score=147.07 Aligned_cols=106 Identities=23% Similarity=0.393 Sum_probs=95.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
++.++++|||+|||+++|+++|+++|+.||.|.+|++.++.. ++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 455678999999999999999999999999999999998754 46999999999999999999999999999999999
Q ss_pred eccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCc
Q 006641 103 YSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141 (637)
Q Consensus 103 ~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~ 141 (637)
|+...... ++++...++++|.++|+.||.
T Consensus 81 ~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 99755432 678899999999999999984
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=7.6e-18 Score=137.12 Aligned_cols=80 Identities=34% Similarity=0.616 Sum_probs=76.5
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
++|||+|||.++++++|+++|++||.|.+++++.+ .+++++|||||+|.+.++|.+|++.|||..++|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999 57999999999999999999999999999999999999999876
Q ss_pred H
Q 006641 389 E 389 (637)
Q Consensus 389 ~ 389 (637)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.2e-17 Score=145.08 Aligned_cols=89 Identities=24% Similarity=0.392 Sum_probs=82.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....+.++|||+|||+++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCc
Q 006641 101 IMYSHRDPS 109 (637)
Q Consensus 101 i~~s~~~~~ 109 (637)
|.|+.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999976644
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=140.30 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=81.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....+.++|||+|||+++++++|+++|+.||.|.+|++.++. +++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455668999999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred eeeccCCC
Q 006641 101 IMYSHRDP 108 (637)
Q Consensus 101 i~~s~~~~ 108 (637)
|.|+...+
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99997654
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=138.96 Aligned_cols=89 Identities=22% Similarity=0.429 Sum_probs=82.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....++++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++ ||+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3445578999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred eeeccCCCcc
Q 006641 101 IMYSHRDPSI 110 (637)
Q Consensus 101 i~~s~~~~~~ 110 (637)
|.|+......
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999765543
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=9.3e-18 Score=137.29 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
..++++|||+|||+++++++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 006641 104 SH 105 (637)
Q Consensus 104 s~ 105 (637)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 71
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=137.31 Aligned_cols=81 Identities=28% Similarity=0.510 Sum_probs=75.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
+.++|||+|||.++|+++|+++|++||.|.+|+++.+ .+++++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4678999999999999999999999999999999998 489999999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 72
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=143.21 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=73.1
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCC--eEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCEEEE
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGT--ITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGK----MIGRKPLY 381 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~--i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~----~~~g~~l~ 381 (637)
-.+|||+|||+++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|.+|++.|||. .++||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 457999999999999999999999995 6789999995 7999999999999999999999999996 58999999
Q ss_pred EEEccc
Q 006641 382 VAVAQR 387 (637)
Q Consensus 382 V~~a~~ 387 (637)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999974
No 73
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=141.18 Aligned_cols=88 Identities=22% Similarity=0.415 Sum_probs=82.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.+...++++|||+|||+++++++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCC
Q 006641 101 IMYSHRDP 108 (637)
Q Consensus 101 i~~s~~~~ 108 (637)
|.|+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99997654
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=141.43 Aligned_cols=90 Identities=20% Similarity=0.417 Sum_probs=83.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeee-CCCCCcccEEEEEecChHHHHHHHHHc-CCCccCCcc
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRD-QSKRSSLGYAYVNYSNPQDAANAKEAL-NFMPINGKP 98 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d-~~t~~s~g~a~V~F~~~e~A~~Al~~l-n~~~i~g~~ 98 (637)
......+++|||+|||+++++++|+++|+.||.|.+|+++++ ..+++++|||||+|.+.++|++|++.| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567899999999999999999999999999999999999 788999999999999999999999999 999999999
Q ss_pred eeeeeccCCCcc
Q 006641 99 IRIMYSHRDPSI 110 (637)
Q Consensus 99 iri~~s~~~~~~ 110 (637)
|+|.|+..+...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876544
No 75
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=141.39 Aligned_cols=88 Identities=17% Similarity=0.369 Sum_probs=82.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|||+++++++|+++|+.||+|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCc
Q 006641 102 MYSHRDPS 109 (637)
Q Consensus 102 ~~s~~~~~ 109 (637)
.|+.....
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99976643
No 76
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.2e-17 Score=145.80 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
..+.++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 006641 104 SH 105 (637)
Q Consensus 104 s~ 105 (637)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 77
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=139.13 Aligned_cols=87 Identities=21% Similarity=0.328 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
+.++++|||+|||+++++++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 006641 104 SHRDPSI 110 (637)
Q Consensus 104 s~~~~~~ 110 (637)
+......
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876554
No 78
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=140.38 Aligned_cols=86 Identities=24% Similarity=0.448 Sum_probs=80.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeE-EEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc--
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVV-SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP-- 98 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~-~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~-- 98 (637)
.+...+++|||+|||++++|++|+++|+.||.|. +|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3455689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred --eeeeeccCC
Q 006641 99 --IRIMYSHRD 107 (637)
Q Consensus 99 --iri~~s~~~ 107 (637)
|+|.|+...
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999998754
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=143.82 Aligned_cols=92 Identities=17% Similarity=0.261 Sum_probs=83.7
Q ss_pred cCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC
Q 006641 16 ATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN 95 (637)
Q Consensus 16 ~~~~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~ 95 (637)
+.........+.++|||+|||+++||++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|.
T Consensus 6 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 6 SGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 3344455667789999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CcceeeeeccCCC
Q 006641 96 GKPIRIMYSHRDP 108 (637)
Q Consensus 96 g~~iri~~s~~~~ 108 (637)
|+.|+|.|+....
T Consensus 85 g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 85 GRKANVNLAYLGA 97 (116)
T ss_dssp TEECEEEESTTTC
T ss_pred CEEEEEEEcccCC
Confidence 9999999997653
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=140.94 Aligned_cols=86 Identities=27% Similarity=0.498 Sum_probs=81.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|||+++++++|+++|+.||+|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 006641 102 MYSHRD 107 (637)
Q Consensus 102 ~~s~~~ 107 (637)
.|+.+.
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998764
No 81
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.3e-18 Score=142.46 Aligned_cols=89 Identities=22% Similarity=0.358 Sum_probs=82.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....+.++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCc
Q 006641 101 IMYSHRDPS 109 (637)
Q Consensus 101 i~~s~~~~~ 109 (637)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999976543
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.1e-17 Score=141.25 Aligned_cols=90 Identities=20% Similarity=0.394 Sum_probs=82.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCcc---CC
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI---NG 96 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i---~g 96 (637)
+.....+.++|||+|||.+++|++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 344556789999999999999999999999999999999999999999999999999999999999999999887 89
Q ss_pred cceeeeeccCCCc
Q 006641 97 KPIRIMYSHRDPS 109 (637)
Q Consensus 97 ~~iri~~s~~~~~ 109 (637)
++|+|.|+.....
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999976543
No 83
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=7.8e-18 Score=156.20 Aligned_cols=140 Identities=16% Similarity=0.309 Sum_probs=79.6
Q ss_pred eecCCHHHHHHHHHHHcCCCCC--CcEEEEeccchhhhHHHHHHHH----HHHhhhhhhhhcccccccccCCCCCCCHHH
Q 006641 252 VNFQSPDAAAAAVEKLNGTTNN--DKVWYVGRAQKRAEREADLRAK----FEQERISRYEKLKGANLYLKNLDDSINDEK 325 (637)
Q Consensus 252 V~F~~~e~A~~Av~~lng~~~~--g~~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~ 325 (637)
..|++.++|..++..+++.... |+......... .+....... .............+++|||+|||.++|+++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTR--EAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccc--ccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6788899999999888776544 33333322111 000000000 000111112234567899999999999999
Q ss_pred HHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchHHHHH
Q 006641 326 LKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393 (637)
Q Consensus 326 L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~ 393 (637)
|+++|++||.|.+|.|+.+ .+|.++|||||+|.+.++|.+||..|||..|.|++|.|.|+.++..+..
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 9999999999999999998 5889999999999999999999999999999999999999998766543
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=138.89 Aligned_cols=86 Identities=22% Similarity=0.378 Sum_probs=80.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEE--------EEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVS--------VRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~--------i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
...++.+.++|||+|||.++++++|+++|+.||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456667899999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CccCCcceeeeecc
Q 006641 92 MPINGKPIRIMYSH 105 (637)
Q Consensus 92 ~~i~g~~iri~~s~ 105 (637)
..|.|+.|+|.|++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 85
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=140.66 Aligned_cols=83 Identities=23% Similarity=0.426 Sum_probs=79.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|++|+++.+.+|+++|||||+|.+.++|.+|++.|||..++|++|+|.+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=4.4e-17 Score=139.02 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC---cce
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING---KPI 99 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g---~~i 99 (637)
....+++|||+|||+++++++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..|.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999998 68899999999999999999999999999998 999
Q ss_pred eeeeccCCCcc
Q 006641 100 RIMYSHRDPSI 110 (637)
Q Consensus 100 ri~~s~~~~~~ 110 (637)
+|.|+......
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-18 Score=142.61 Aligned_cols=79 Identities=18% Similarity=0.339 Sum_probs=72.8
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMN--GKMIGRKPLYVA 383 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~--g~~~~g~~l~V~ 383 (637)
..+.++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.++ +..+.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 346788999999999999999999999999999999976 8999999999999999999886 478999999999
Q ss_pred EccchH
Q 006641 384 VAQRKE 389 (637)
Q Consensus 384 ~a~~~~ 389 (637)
+++.+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 998764
No 88
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=8.1e-18 Score=139.98 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=73.3
Q ss_pred hhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCEEEEE
Q 006641 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM--IGRKPLYV 382 (637)
Q Consensus 305 ~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~--~~g~~l~V 382 (637)
...++.+|||+|||+++|+++|+++|++||.|++|+++++ ||||||+|.+.++|.+|++.|++.. +.||+|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 3457788999999999999999999999999999999854 8999999999999999999999875 78999999
Q ss_pred EEccchH
Q 006641 383 AVAQRKE 389 (637)
Q Consensus 383 ~~a~~~~ 389 (637)
.+++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.3e-17 Score=133.44 Aligned_cols=76 Identities=22% Similarity=0.406 Sum_probs=70.9
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
+..|||+||++.+|+++|+++|++||+|.++++.. +||||||+|.+.++|.+|++.||+..+.||+|+|++|...
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSEN 81 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence 56799999999999999999999999999999975 5999999999999999999999999999999999999543
Q ss_pred H
Q 006641 389 E 389 (637)
Q Consensus 389 ~ 389 (637)
+
T Consensus 82 ~ 82 (89)
T 2wbr_A 82 E 82 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 90
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=140.92 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=81.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|||+++++++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 006641 102 MYSHRDP 108 (637)
Q Consensus 102 ~~s~~~~ 108 (637)
.|+...+
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987653
No 91
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=138.75 Aligned_cols=84 Identities=26% Similarity=0.536 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
......+++|||+|||+++++++|+++|+.||+|.+|++++|.. ++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34556789999999999999999999999999999999999986 88999999999999999999999999999999999
Q ss_pred eeecc
Q 006641 101 IMYSH 105 (637)
Q Consensus 101 i~~s~ 105 (637)
|.|+.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 99985
No 92
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=2.3e-17 Score=134.27 Aligned_cols=81 Identities=32% Similarity=0.575 Sum_probs=77.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
+.+|||+|||+++++++|+++|+.||+|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 006641 107 D 107 (637)
Q Consensus 107 ~ 107 (637)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=5.4e-18 Score=143.20 Aligned_cols=84 Identities=18% Similarity=0.310 Sum_probs=78.4
Q ss_pred ccccccccCCCC------CCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-EE
Q 006641 308 KGANLYLKNLDD------SINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGR-KP 379 (637)
Q Consensus 308 ~~~~l~V~nL~~------~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g-~~ 379 (637)
..++|||+|||. ++++++|+++|++||.|.+|+|+.|+ +|+++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999996 59999999999999999999999999999999 99
Q ss_pred EEEEEccchHHH
Q 006641 380 LYVAVAQRKEER 391 (637)
Q Consensus 380 l~V~~a~~~~~~ 391 (637)
|+|.++.+++..
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999876543
No 94
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=1.7e-17 Score=135.67 Aligned_cols=80 Identities=26% Similarity=0.473 Sum_probs=76.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+|||.++++++|+++|++||.|.+|+++.| .+++++|||||+|.+.++|.+|++.|||..++|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999998 67889999999999999999999999999999999999998
Q ss_pred c
Q 006641 386 Q 386 (637)
Q Consensus 386 ~ 386 (637)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 95
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=138.47 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=77.6
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|||.++++++|+++|++||.|++|+|+.|.+++++|||||+|.+.++|.+|++.||+..++|++|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 006641 386 QR 387 (637)
Q Consensus 386 ~~ 387 (637)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 96
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=8.4e-18 Score=154.54 Aligned_cols=83 Identities=23% Similarity=0.308 Sum_probs=78.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356889999999999999999999999999999999995 6889999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8753
No 97
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=138.56 Aligned_cols=88 Identities=27% Similarity=0.434 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.......++|||+|||+++++++|+++|+.||.|.+|++++|..+ ++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345567899999999999999999999999999999999999654 679999999999999999999999999999999
Q ss_pred eeeccCCCcc
Q 006641 101 IMYSHRDPSI 110 (637)
Q Consensus 101 i~~s~~~~~~ 110 (637)
|.|+......
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 98
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=4.6e-18 Score=140.72 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=71.4
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcC--CeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFG--TITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G--~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.+|||+|||+++|+++|+++|++|| .|.+|+++.|+ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999994 89999999999999999999999999999999999999998
Q ss_pred chHHH
Q 006641 387 RKEER 391 (637)
Q Consensus 387 ~~~~~ 391 (637)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 99
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=138.20 Aligned_cols=88 Identities=25% Similarity=0.466 Sum_probs=81.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
......+.++|||+|||+++|+++|+++|+.||.|.+|+++++ +++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3345567899999999999999999999999999999999998 78899999999999999999999999999999999
Q ss_pred eeeeccCCCc
Q 006641 100 RIMYSHRDPS 109 (637)
Q Consensus 100 ri~~s~~~~~ 109 (637)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999976654
No 100
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=2.3e-17 Score=138.29 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=79.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
++++|||+|||.++++++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 006641 106 RDP 108 (637)
Q Consensus 106 ~~~ 108 (637)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=140.46 Aligned_cols=88 Identities=15% Similarity=0.271 Sum_probs=82.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC------CCccC
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN------FMPIN 95 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln------~~~i~ 95 (637)
....++++|||+|||+++++++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++.|| +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344568999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CcceeeeeccCCCc
Q 006641 96 GKPIRIMYSHRDPS 109 (637)
Q Consensus 96 g~~iri~~s~~~~~ 109 (637)
|+.|+|.|+.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999976543
No 102
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=4.4e-17 Score=138.52 Aligned_cols=89 Identities=18% Similarity=0.305 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
...+..+.++|||+|||+++++++|+++|+.|| |.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 344556789999999999999999999999997 999999999999999999999999999999999 999999999999
Q ss_pred eeeeccCCCcc
Q 006641 100 RIMYSHRDPSI 110 (637)
Q Consensus 100 ri~~s~~~~~~ 110 (637)
+|.|+......
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dng_A 86 RVDIAEGRKQD 96 (103)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEecCCCCC
Confidence 99999765543
No 103
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=140.91 Aligned_cols=83 Identities=28% Similarity=0.493 Sum_probs=78.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999999996 8999999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9874
No 104
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=139.84 Aligned_cols=93 Identities=18% Similarity=0.298 Sum_probs=84.1
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 17 TTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 17 ~~~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
+..+.....+.++|||+|||+++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++||+. |+..|.|
T Consensus 6 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 6 SGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp CCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 333444567789999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred cceeeeeccCCCcc
Q 006641 97 KPIRIMYSHRDPSI 110 (637)
Q Consensus 97 ~~iri~~s~~~~~~ 110 (637)
+.|+|.|+......
T Consensus 85 ~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 85 RNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEEBCCCSCCSSCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999766543
No 105
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=2.2e-17 Score=138.41 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=78.3
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
+++|||+|||.++++++|+++|++||.|.+|+++.|. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5689999999999999999999999999999999984 689999999999999999999999999999999999999998
Q ss_pred hHHH
Q 006641 388 KEER 391 (637)
Q Consensus 388 ~~~~ 391 (637)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7544
No 106
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=141.33 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=77.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++|||+|||.++|+++|+++|++||.|.+|+|+.|..|+++|||||+|.+.++|.+|+. +++..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4578999999999999999999999999999999999879999999999999999999997 999999999999999887
Q ss_pred hHHHH
Q 006641 388 KEERK 392 (637)
Q Consensus 388 ~~~~~ 392 (637)
-..++
T Consensus 89 ~~~~k 93 (103)
T 1s79_A 89 YFAKK 93 (103)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 107
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=138.70 Aligned_cols=85 Identities=28% Similarity=0.590 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEE-EEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSV-RVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i-~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
.++++|||+|||+++++++|+++|+.||.|.+| ++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 006641 104 SHRDPS 109 (637)
Q Consensus 104 s~~~~~ 109 (637)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976654
No 108
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=1.2e-17 Score=138.30 Aligned_cols=81 Identities=15% Similarity=0.313 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVA--QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G--~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+|||+|||+++||++|+++|+.|| .|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 006641 106 RDP 108 (637)
Q Consensus 106 ~~~ 108 (637)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 109
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=148.88 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=78.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcC--CeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFG--TITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G--~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.| .+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 9999999999 4899999999999999999999999999999999999999
Q ss_pred ccchHHHH
Q 006641 385 AQRKEERK 392 (637)
Q Consensus 385 a~~~~~~~ 392 (637)
+.++....
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 99876544
No 110
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=4.7e-18 Score=181.52 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=78.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+||++.+|+++|+++|++||.|++|.|+.| .+++++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999998 48899999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
..+.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8654
No 111
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=138.72 Aligned_cols=88 Identities=19% Similarity=0.345 Sum_probs=81.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCC-CCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSK-RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t-~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
..+..+.++|||+|||+++++++|+++|+.|| |.+|+|++|..+ ++++|||||+|.+.++|++|| .||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34556789999999999999999999999999 999999999988 899999999999999999999 999999999999
Q ss_pred eeeeccCCCcc
Q 006641 100 RIMYSHRDPSI 110 (637)
Q Consensus 100 ri~~s~~~~~~ 110 (637)
+|.|+......
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999776543
No 112
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=137.58 Aligned_cols=86 Identities=23% Similarity=0.461 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCC---CCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQS---KRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~---t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.++++|||+|||++++|++|+++|+.||+|.+|++.++.. |++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999987 6789999999999999999999999999999999999
Q ss_pred eeccCCCcc
Q 006641 102 MYSHRDPSI 110 (637)
Q Consensus 102 ~~s~~~~~~ 110 (637)
.|+......
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999776543
No 113
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=2.7e-17 Score=142.85 Aligned_cols=83 Identities=36% Similarity=0.613 Sum_probs=78.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|.+|++.||+..|+|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356789999999999999999999999999999999996 7999999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8764
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=144.83 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=80.2
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCe-EEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTI-TSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i-~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.|.+|+++|||||+|.+.++|.+|++. |+..|+|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 899999999999999999999999999999976 999999999999999
Q ss_pred cchHHHHH
Q 006641 386 QRKEERKA 393 (637)
Q Consensus 386 ~~~~~~~~ 393 (637)
.+++.+..
T Consensus 92 ~~~~~~~~ 99 (114)
T 2cpy_A 92 TLEDMREI 99 (114)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98876654
No 115
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-17 Score=136.10 Aligned_cols=82 Identities=23% Similarity=0.329 Sum_probs=77.0
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..+.++|||+|||.++|+++|+++|++||.|.+|+++.|. +++++|||||+|.+.++|.+|++.|||..++|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999985 588999999999999999999999999999999999999
Q ss_pred ccc
Q 006641 385 AQR 387 (637)
Q Consensus 385 a~~ 387 (637)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 116
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=137.49 Aligned_cols=81 Identities=35% Similarity=0.578 Sum_probs=77.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||.++|+++|+++|++||.|.+|+++.|. +++++|||||+|.+.++|.+|++.|||..++|++|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56789999999999999999999999999999999985 68899999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 117
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=141.20 Aligned_cols=84 Identities=62% Similarity=0.976 Sum_probs=79.5
Q ss_pred hhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 305 ~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
...+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++.++|||||+|.+.++|.+|++.|||..++|++|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 99764
No 118
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=3.8e-17 Score=139.93 Aligned_cols=82 Identities=29% Similarity=0.515 Sum_probs=78.0
Q ss_pred hhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 305 ~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
.....++|||+|||.++|+++|+++|++||.|++|+|+.+.+|+++|||||+|.+.++|.+|++.|||..++|++|+|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 006641 385 AQ 386 (637)
Q Consensus 385 a~ 386 (637)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 119
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=3.7e-17 Score=140.77 Aligned_cols=88 Identities=24% Similarity=0.361 Sum_probs=82.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....++++|||+|||.++++++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCC
Q 006641 101 IMYSHRDP 108 (637)
Q Consensus 101 i~~s~~~~ 108 (637)
|.|+...+
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99997654
No 120
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=2.8e-17 Score=140.24 Aligned_cols=84 Identities=30% Similarity=0.496 Sum_probs=79.3
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---EEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR---KPLYVA 383 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g---~~l~V~ 383 (637)
...++|||+|||.++|+++|+++|++||.|++|+|+.|.+++++|||||+|.+.++|.+|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35788999999999999999999999999999999999989999999999999999999999999999988 999999
Q ss_pred EccchHH
Q 006641 384 VAQRKEE 390 (637)
Q Consensus 384 ~a~~~~~ 390 (637)
+++.+..
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9997653
No 121
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=136.14 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=75.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.||+..++|++|+|.+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456789999999999999999999999999999999985 5889999999999999999999999999999999999998
Q ss_pred c
Q 006641 386 Q 386 (637)
Q Consensus 386 ~ 386 (637)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 122
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=138.49 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
......++|||+|||+++++++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 006641 102 MYSHRD 107 (637)
Q Consensus 102 ~~s~~~ 107 (637)
.|+...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998654
No 123
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=137.05 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC--CccCCccee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF--MPINGKPIR 100 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~--~~i~g~~ir 100 (637)
++.++++|||+|||+++||++|+++|++||.|++|+|+++ +|||||+|.+.++|++|++.|++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4556899999999999999999999999999999999986 38999999999999999998864 689999999
Q ss_pred eeeccCCCccc
Q 006641 101 IMYSHRDPSIR 111 (637)
Q Consensus 101 i~~s~~~~~~~ 111 (637)
|.|+.......
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998765443
No 124
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=135.77 Aligned_cols=87 Identities=21% Similarity=0.352 Sum_probs=79.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.......++|||+|||+++++++|+++|+.||.|.+|+++++..+ ++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345567899999999999999999999999999999999998753 789999999999999999999999999999999
Q ss_pred eeeccCCCc
Q 006641 101 IMYSHRDPS 109 (637)
Q Consensus 101 i~~s~~~~~ 109 (637)
|.|+...+.
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999976654
No 125
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=136.79 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=74.7
Q ss_pred ccccccccCCCCCCCHHHHH----HHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLK----ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~----~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
.+++|||+|||+++++++|+ ++|++||.|.+|+|+.|..+ +|||||+|.+.++|.+|++.|||..++|++|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 46789999999999999999 99999999999999999755 8999999999999999999999999999999999
Q ss_pred Eccch
Q 006641 384 VAQRK 388 (637)
Q Consensus 384 ~a~~~ 388 (637)
+|+++
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 99765
No 126
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=143.09 Aligned_cols=82 Identities=28% Similarity=0.491 Sum_probs=78.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|++|+|+.|.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 127
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=138.37 Aligned_cols=82 Identities=33% Similarity=0.590 Sum_probs=77.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEE-EEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~-~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
++++|||+|||.++|+++|+++|++||.|.+| +|+.| .++.++|||||+|.+.++|.+|++.|||..++|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56789999999999999999999999999999 99998 68999999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 128
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=139.31 Aligned_cols=84 Identities=30% Similarity=0.421 Sum_probs=79.0
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
....++|||+|||.++|+++|+++|++||.|++|+|+.+. +++++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4467889999999999999999999999999999999994 789999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98763
No 129
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=137.22 Aligned_cols=82 Identities=34% Similarity=0.655 Sum_probs=76.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC--C--CcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH--G--FSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~--g--~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
+.++|||+|||.++|+++|+++|++||.|++|+|+.+.. | +++|||||+|.+.++|.+|++.|||..++|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999999853 3 889999999999999999999999999999999999
Q ss_pred EccchH
Q 006641 384 VAQRKE 389 (637)
Q Consensus 384 ~a~~~~ 389 (637)
+++++.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 998753
No 130
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=140.50 Aligned_cols=82 Identities=30% Similarity=0.536 Sum_probs=78.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.+++++++|||||+|.+.++|.+|++.||+..++|+.|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 131
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=4e-17 Score=130.65 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
+..+.+|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999865 459999999999999999999999999999999988
Q ss_pred cc
Q 006641 104 SH 105 (637)
Q Consensus 104 s~ 105 (637)
+.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 132
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=5.9e-17 Score=140.70 Aligned_cols=83 Identities=30% Similarity=0.519 Sum_probs=78.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|++|+|+.+. +++++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999999994 8999999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 93 ~~~~ 96 (115)
T 2dgo_A 93 TRKP 96 (115)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8764
No 133
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=136.25 Aligned_cols=86 Identities=27% Similarity=0.439 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhc-cCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc-cCCccee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQ-VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP-INGKPIR 100 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~-~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~-i~g~~ir 100 (637)
...++++|||+|||+++|+++|+++|+. ||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+.. |.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999999 89999999999999999999999999999 9999999
Q ss_pred eeeccCCCc
Q 006641 101 IMYSHRDPS 109 (637)
Q Consensus 101 i~~s~~~~~ 109 (637)
|.|+.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 134
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=6.6e-18 Score=150.88 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=79.7
Q ss_pred eeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHH
Q 006641 249 FGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328 (637)
Q Consensus 249 ~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~ 328 (637)
+.|++|++...+..|++.+++....++.-. .+... .......++|||+|||.++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~~~~------------------~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SYGRP------------------PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -----------------------------C-CSCCS------------------CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-CcCCC------------------CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 567778888888888888877665443311 11111 11233567899999999999999999
Q ss_pred HHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 329 LFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 329 ~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
+|++||.|++|+|+.|. +++++|||||+|.+.++|.+|++.|||..++|++|+|.+++++.
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999985 78999999999999999999999999999999999999998653
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3e-17 Score=143.05 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=78.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCC---eEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGT---ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~---i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.|.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35678999999999999999999999999 899999999889999999999999999999997 99999999999999
Q ss_pred EccchHHH
Q 006641 384 VAQRKEER 391 (637)
Q Consensus 384 ~a~~~~~~ 391 (637)
++..++..
T Consensus 94 ~a~~~~~~ 101 (118)
T 2db1_A 94 KSHRTEMD 101 (118)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99877644
No 136
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-17 Score=137.46 Aligned_cols=83 Identities=27% Similarity=0.506 Sum_probs=77.4
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|||.++|+++|+++|++||.|++|+|+.+..+ ++|||||+|.+.++|.+|+..||+..|+|++|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345688999999999999999999999999999999998754 8999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8763
No 137
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-17 Score=135.38 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
+.++++|||+|||+++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.+++.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q 006641 104 SH 105 (637)
Q Consensus 104 s~ 105 (637)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 138
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=3.4e-17 Score=138.28 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCC------CCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC-cc
Q 006641 26 GNVSLYVGDLEQ------NVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING-KP 98 (637)
Q Consensus 26 ~~~~L~V~nLp~------~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g-~~ 98 (637)
.+++|||+|||. ++++++|+++|+.||.|.+|+|++|+.|++++|||||+|.+.++|++|++.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeeeeccC
Q 006641 99 IRIMYSHR 106 (637)
Q Consensus 99 iri~~s~~ 106 (637)
|+|.|+.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999854
No 139
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=3.1e-17 Score=141.24 Aligned_cols=84 Identities=23% Similarity=0.450 Sum_probs=78.8
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
...+++|||+|||.++|+++|+++|++||.|.+|+++.+ .+|+++|||||+|.+.++|.+|+..|||..++|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345678999999999999999999999999999999998 4789999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98764
No 140
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=139.29 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeE--------EEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVV--------SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~--------~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
.....+++|||+|||+++|+++|+++|+.||.|. .|+|++|+.+++++|||||+|.+.++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455789999999999999999999999999999 59999999999999999999999999999999999999
Q ss_pred cCCcceeeeeccCCCc
Q 006641 94 INGKPIRIMYSHRDPS 109 (637)
Q Consensus 94 i~g~~iri~~s~~~~~ 109 (637)
|.|+.|+|.|+.....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 141
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=138.89 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=78.2
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|.+|++.||+..++|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35678999999999999999999999999999999998 57889999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=138.45 Aligned_cols=80 Identities=16% Similarity=0.330 Sum_probs=75.3
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
.++|||+|||+++|+++|+++|+.| .|++|+|+.|++|+++|||||+|.+.++|.+|+ .+|+..++||.|+|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4679999999999999999999999 999999999988999999999999999999999 79999999999999999866
Q ss_pred HH
Q 006641 389 EE 390 (637)
Q Consensus 389 ~~ 390 (637)
+-
T Consensus 94 ~~ 95 (109)
T 2dnn_A 94 QW 95 (109)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 143
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=134.77 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC--CCcc
Q 006641 17 TTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN--FMPI 94 (637)
Q Consensus 17 ~~~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln--~~~i 94 (637)
++.......++++|||+|||++++|++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.|+ ...|
T Consensus 5 s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 5 SSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp CCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3444556677899999999999999999999999999999999876 3899999999999999999774 6779
Q ss_pred CCcceeeeeccCCCcc
Q 006641 95 NGKPIRIMYSHRDPSI 110 (637)
Q Consensus 95 ~g~~iri~~s~~~~~~ 110 (637)
.|++|+|.|+......
T Consensus 79 ~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 79 RNQPIYIQYSNHKELK 94 (101)
T ss_dssp TTEECEEEECSCSSCC
T ss_pred CCcEEEEEEcCcccCc
Confidence 9999999999866544
No 144
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=143.40 Aligned_cols=88 Identities=26% Similarity=0.375 Sum_probs=82.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
......++|||+|||.+++|++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCc
Q 006641 102 MYSHRDPS 109 (637)
Q Consensus 102 ~~s~~~~~ 109 (637)
.|+.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99976543
No 145
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=138.80 Aligned_cols=84 Identities=21% Similarity=0.460 Sum_probs=78.4
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
...+++|||+|||.++|+++|+++|++||.|.+|.++.|. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999999985 689999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98753
No 146
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.6e-17 Score=136.70 Aligned_cols=83 Identities=28% Similarity=0.419 Sum_probs=76.9
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|||.++|+++|+++|++||.|++|+|+.|..+ ++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345688999999999999999999999999999999998543 7999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 8764
No 147
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=135.15 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC--CccCCcce
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF--MPINGKPI 99 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~--~~i~g~~i 99 (637)
....++++|||+|||++++|++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|++ ..|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567899999999999999999999999999999999875 37999999999999999998865 45999999
Q ss_pred eeeeccCCCcc
Q 006641 100 RIMYSHRDPSI 110 (637)
Q Consensus 100 ri~~s~~~~~~ 110 (637)
+|.|+......
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999866543
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=142.28 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=78.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCe----EEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTI----TSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i----~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V 382 (637)
...++|||+|||+++|+++|+++|++||.| ++|.|+.|.+|+++|||||+|.+.++|.+|++. |++.++||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456789999999999999999999999975 699999999999999999999999999999975 999999999999
Q ss_pred EEccchHHHHH
Q 006641 383 AVAQRKEERKA 393 (637)
Q Consensus 383 ~~a~~~~~~~~ 393 (637)
..+.+++.++.
T Consensus 100 ~~a~~~e~~~~ 110 (123)
T 2dha_A 100 FRSTAAEVQQV 110 (123)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99988776654
No 149
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=137.18 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=76.4
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEE--------EEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITS--------CKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~--------~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~ 376 (637)
....++|||+|||.++|+++|+++|++||.|.+ |+++.| .+|+++|||||+|.+.++|.+|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346788999999999999999999999999999 999998 57999999999999999999999999999999
Q ss_pred CEEEEEEEcc
Q 006641 377 RKPLYVAVAQ 386 (637)
Q Consensus 377 g~~l~V~~a~ 386 (637)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 150
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2e-17 Score=138.33 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...+.++|||+|||+++++++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 33456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 006641 103 YSH 105 (637)
Q Consensus 103 ~s~ 105 (637)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 874
No 151
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=138.34 Aligned_cols=84 Identities=26% Similarity=0.501 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
...+++|||+|||.++++++|+++|+.||.|.+|++++|. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred ccCCC
Q 006641 104 SHRDP 108 (637)
Q Consensus 104 s~~~~ 108 (637)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97654
No 152
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=139.52 Aligned_cols=84 Identities=27% Similarity=0.430 Sum_probs=79.0
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
....++|||+|||.++|+++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|.+|++.||+..++|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456789999999999999999999999999999999985 799999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98764
No 153
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=138.69 Aligned_cols=86 Identities=27% Similarity=0.506 Sum_probs=80.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||.++++++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35689999999999999999999999999999999984 78899999999999999999999999999999999999999
Q ss_pred chHHHHH
Q 006641 387 RKEERKA 393 (637)
Q Consensus 387 ~~~~~~~ 393 (637)
++..+..
T Consensus 87 ~~~~~~~ 93 (104)
T 1p1t_A 87 SEKNKEE 93 (104)
T ss_dssp CTTHHHH
T ss_pred Cccchhh
Confidence 8876654
No 154
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=9.7e-17 Score=131.82 Aligned_cols=82 Identities=16% Similarity=0.320 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....+.++|||+|||+++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++ +++..|.|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999995 5777899999999
Q ss_pred eec
Q 006641 102 MYS 104 (637)
Q Consensus 102 ~~s 104 (637)
.|+
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 155
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=137.12 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=77.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|.+|++ ||+..++|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999999984 68899999999999999999997 9999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8764
No 156
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=2.8e-17 Score=146.19 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=78.7
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCC---eEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGT---ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~---i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
...++|||+|||+++|+++|+++|++||. |++|+|+.|++|+++|||||+|.+.++|.+|++ +|++.++||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35678999999999999999999999999 899999999889999999999999999999998 99999999999999
Q ss_pred EccchHHH
Q 006641 384 VAQRKEER 391 (637)
Q Consensus 384 ~a~~~~~~ 391 (637)
++.+++..
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99877644
No 157
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=5.7e-17 Score=139.21 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...+.++|||+|||.+++|++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|++|++.++ ..|.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred eccCCC
Q 006641 103 YSHRDP 108 (637)
Q Consensus 103 ~s~~~~ 108 (637)
|+....
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987654
No 158
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=137.62 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=80.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 19 AAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 19 ~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
........+++|||+|||+++++++|+++|+.||.|.+|+|+++. +++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 7 GALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 334456678999999999999999999999999999999999998 4889999999999999999999999999999999
Q ss_pred eeeeeccCC
Q 006641 99 IRIMYSHRD 107 (637)
Q Consensus 99 iri~~s~~~ 107 (637)
|+|.|+...
T Consensus 86 l~v~~a~~~ 94 (114)
T 2do0_A 86 MHVKMDERA 94 (114)
T ss_dssp CEEEECSCC
T ss_pred EEEEEcccC
Confidence 999998654
No 159
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.6e-16 Score=131.93 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...++++|||+|||.++++++|+++|+.||.|.+|++.++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999985 67889999999999999999999999999999999999
Q ss_pred eccCCC
Q 006641 103 YSHRDP 108 (637)
Q Consensus 103 ~s~~~~ 108 (637)
|+....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 997654
No 160
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=140.24 Aligned_cols=84 Identities=35% Similarity=0.549 Sum_probs=79.3
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhh-cCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSE-FGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM-IGRKPLYVA 383 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~-~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~-~~g~~l~V~ 383 (637)
..+.++|||+|||.++|+++|+++|++ ||.|.+|+|+.|.+|+++|||||+|.+.++|.+|++.||+.. ++|++|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 346788999999999999999999999 999999999999999999999999999999999999999999 999999999
Q ss_pred EccchH
Q 006641 384 VAQRKE 389 (637)
Q Consensus 384 ~a~~~~ 389 (637)
++.++.
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 998764
No 161
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=7.3e-17 Score=133.15 Aligned_cols=79 Identities=20% Similarity=0.427 Sum_probs=75.1
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
.++|||+|||.++|+++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|+ .|||..++|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4679999999999999999999999999999999984 8899999999999999999999 9999999999999999976
Q ss_pred h
Q 006641 388 K 388 (637)
Q Consensus 388 ~ 388 (637)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 162
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=137.99 Aligned_cols=92 Identities=26% Similarity=0.449 Sum_probs=81.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
++|||+|||+++|+++|+++|+.||+|.+|++.++ ++|||||+|.+.++|++|++.||+..|.|+.|+|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999988 5589999999999999999999999999999999999765
Q ss_pred Cccc--------cCCCccEEEeCCC
Q 006641 108 PSIR--------KSGYGNVFIKNLD 124 (637)
Q Consensus 108 ~~~~--------~~~~~~i~V~nLp 124 (637)
+... .....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4221 1224579999986
No 163
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-17 Score=144.42 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEE--EEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCC----ccCC
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVS--VRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFM----PING 96 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~--i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~----~i~g 96 (637)
....+++|||+|||+++||++|+++|+.||.|.+ |+|++|+.|++++|||||+|.+. +|.+|++.||+. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999977 99999999999999999999999 999999999999 9999
Q ss_pred cceeeeeccCC
Q 006641 97 KPIRIMYSHRD 107 (637)
Q Consensus 97 ~~iri~~s~~~ 107 (637)
+.|+|.|+...
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998754
No 164
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=144.06 Aligned_cols=83 Identities=30% Similarity=0.457 Sum_probs=78.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|+.||.|++|+|+.|. +++++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999995 6889999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 165
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=5.8e-17 Score=134.70 Aligned_cols=82 Identities=27% Similarity=0.447 Sum_probs=77.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|.+|+++.+ +++++|||||+|.+.++|.+|++.||+..++|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35678999999999999999999999999999999985 68899999999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 166
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-17 Score=135.95 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCCCCCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCC--ccCC
Q 006641 20 AVPSGYGNVSLYVGDLEQ-NVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFM--PING 96 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~-~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~--~i~g 96 (637)
......++++|||+|||+ ++||++|+++|+.||.|.+|+|.+++ |||||+|.+.++|++|++.||+. .|.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 334556789999999999 99999999999999999999998764 69999999999999999998854 5999
Q ss_pred cceeeeeccCCCcc
Q 006641 97 KPIRIMYSHRDPSI 110 (637)
Q Consensus 97 ~~iri~~s~~~~~~ 110 (637)
++|+|.|++....+
T Consensus 82 r~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 82 KPVRVHLSQKYKRI 95 (102)
T ss_dssp EECEEEEECCCTTS
T ss_pred cEEEEEECCCCCCC
Confidence 99999999865433
No 167
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.8e-17 Score=138.80 Aligned_cols=84 Identities=23% Similarity=0.436 Sum_probs=78.8
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC--CCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ--HGFSKGSGFAAFSMPEEATRALNEM-NGKMIGRKPLYV 382 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~--~g~~~g~afV~f~~~~~A~~A~~~~-~g~~~~g~~l~V 382 (637)
....++|||+|||.++|+++|+++|++||.|++|+|+.+. +++++|||||+|.+.++|.+|+..| |+..+.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4467889999999999999999999999999999999984 7899999999999999999999999 999999999999
Q ss_pred EEccchH
Q 006641 383 AVAQRKE 389 (637)
Q Consensus 383 ~~a~~~~ 389 (637)
.+++++.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998764
No 168
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-17 Score=138.11 Aligned_cols=83 Identities=28% Similarity=0.488 Sum_probs=78.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.+. +++++|||||+|.+.++|.+|++.||+..++|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999984 7889999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8764
No 169
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.3e-17 Score=136.31 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
...++|||+|||+++|+++|+++|+.||+|.+|++++|.. ++++|||||+|.+.++|.+||+ +++..|.|+.|+|.|+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999999999988 8999999999999999999997 8999999999999997
Q ss_pred cC
Q 006641 105 HR 106 (637)
Q Consensus 105 ~~ 106 (637)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 170
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-17 Score=140.01 Aligned_cols=82 Identities=26% Similarity=0.472 Sum_probs=76.9
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|||.++|+++|+++|++||.|++|+++.|. +.++|||||+|.+.++|.+|++.|||..++|++|+|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4467889999999999999999999999999999999986 458999999999999999999999999999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 171
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=133.74 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....+.++|||+|||.++++++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++||+. ...|.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEE
Confidence 44556789999999999999999999999999999999999999999999999999999999999974 5689999999
Q ss_pred eeeccCCCcc
Q 006641 101 IMYSHRDPSI 110 (637)
Q Consensus 101 i~~s~~~~~~ 110 (637)
|.|+......
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999766543
No 172
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-17 Score=138.64 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=71.0
Q ss_pred cccccccccCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCEEEEEE
Q 006641 307 LKGANLYLKNLDD-SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGK--MIGRKPLYVA 383 (637)
Q Consensus 307 ~~~~~l~V~nL~~-~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~--~~~g~~l~V~ 383 (637)
.++++|||+|||+ ++|+++|+++|++||.|++|.|+++ +|||||+|.+.++|.+|++.||+. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3678899999999 9999999999999999999999876 689999999999999999999864 5999999999
Q ss_pred Eccch
Q 006641 384 VAQRK 388 (637)
Q Consensus 384 ~a~~~ 388 (637)
+|+.+
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99864
No 173
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.9e-17 Score=140.91 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=73.5
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG--KMIGRKPLYVA 383 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g--~~~~g~~l~V~ 383 (637)
..++++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.+++ ..+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 446788999999999999999999999999999999976 89999999999999999999874 68999999999
Q ss_pred EccchHH
Q 006641 384 VAQRKEE 390 (637)
Q Consensus 384 ~a~~~~~ 390 (637)
+++.++.
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987653
No 174
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=132.77 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=76.2
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||+++|+++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|.+|++ ||+..++|+.|.|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356789999999999999999999999 9999999999889999999999999999999999 99999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 175
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=133.45 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc--cCCcce
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP--INGKPI 99 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~--i~g~~i 99 (637)
....++++|||+|||+++||++|+++|++||.|++|+++++ +|||||+|.+.++|.+|++.|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34457899999999999999999999999999999999864 3799999999999999999998765 789999
Q ss_pred eeeeccCC
Q 006641 100 RIMYSHRD 107 (637)
Q Consensus 100 ri~~s~~~ 107 (637)
+|.||+..
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999764
No 176
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8e-17 Score=135.57 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=72.5
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM--NGKMIGRKPLYVA 383 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~--~g~~~~g~~l~V~ 383 (637)
..++++|||+|||+++|+++|+++|++||.|++|.++++ ||||||+|.+.++|.+|++.| ++..+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 446788999999999999999999999999999999875 899999999999999999987 5678999999999
Q ss_pred EccchH
Q 006641 384 VAQRKE 389 (637)
Q Consensus 384 ~a~~~~ 389 (637)
+++.++
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 998764
No 177
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=139.09 Aligned_cols=82 Identities=26% Similarity=0.394 Sum_probs=76.5
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
....++|||+|||.++|+++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|.+|++.+++ .+.|++|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3456789999999999999999999999999999999984 689999999999999999999999998 89999999999
Q ss_pred ccch
Q 006641 385 AQRK 388 (637)
Q Consensus 385 a~~~ 388 (637)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9765
No 178
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=134.53 Aligned_cols=81 Identities=25% Similarity=0.464 Sum_probs=75.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-CC-cccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GF-SKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~-g~-~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
..++|||+|||.++|+++|+++|++||.|.+|+++.+.. +. ++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999853 33 8999999999999999999999999999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 179
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-16 Score=134.47 Aligned_cols=86 Identities=20% Similarity=0.456 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++..+ ++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344556899999999999999999999999999999999665 44779999999999999999999999999999999
Q ss_pred eeeccCCCc
Q 006641 101 IMYSHRDPS 109 (637)
Q Consensus 101 i~~s~~~~~ 109 (637)
|.|+.....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999976543
No 180
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=143.53 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=79.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 19 AAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 19 ~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
.+.....+.++|||+|||+++++++|+++|+.||+|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 55 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 55 GSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeec
Q 006641 99 IRIMYS 104 (637)
Q Consensus 99 iri~~s 104 (637)
|+|.|+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999885
No 181
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=138.37 Aligned_cols=83 Identities=34% Similarity=0.571 Sum_probs=78.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|.+|+++.+ .+|+++|||||+|.+.++|.+|++.|||..++|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999998 47889999999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8763
No 182
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=1.2e-16 Score=131.91 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+++|||+|||+++++++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999999999999999999999999999 999999999999999986
Q ss_pred CC
Q 006641 106 RD 107 (637)
Q Consensus 106 ~~ 107 (637)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 183
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.9e-17 Score=138.31 Aligned_cols=84 Identities=26% Similarity=0.485 Sum_probs=78.6
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhC------CceeCCE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMN------GKMIGRK 378 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~------g~~~~g~ 378 (637)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|.+|++.|| +..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457889999999999999999999999999999999994 68899999999999999999999999 9999999
Q ss_pred EEEEEEccchH
Q 006641 379 PLYVAVAQRKE 389 (637)
Q Consensus 379 ~l~V~~a~~~~ 389 (637)
+|+|.++.++.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999998764
No 184
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=131.83 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCC-cccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS-SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~-s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
..+++|||+|||+++|+++|+++|+.||.|.+|++.++..++. ++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999988766 889999999999999999999999999999999999
Q ss_pred ccCC
Q 006641 104 SHRD 107 (637)
Q Consensus 104 s~~~ 107 (637)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8543
No 185
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=133.68 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLY----DLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~----~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
+..+.++|||+|||+++++++|+ ++|+.||+|.+|+|.+|+.+ +|||||+|.+.++|++|++.||+..|.|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34467899999999999999999 99999999999999999876 589999999999999999999999999999
Q ss_pred eeeeeccCCC
Q 006641 99 IRIMYSHRDP 108 (637)
Q Consensus 99 iri~~s~~~~ 108 (637)
|+|.|+...+
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 186
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=140.00 Aligned_cols=83 Identities=20% Similarity=0.419 Sum_probs=77.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.|. +++++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 35689999999999999999999999999999999986 5889999999999999999999 999999999999999998
Q ss_pred chHHH
Q 006641 387 RKEER 391 (637)
Q Consensus 387 ~~~~~ 391 (637)
.+..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 77654
No 187
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=141.00 Aligned_cols=82 Identities=29% Similarity=0.511 Sum_probs=78.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..+++|||+|||.++++++|+++|++||.|++|+|+.+.+|+++|||||+|.+.++|.+|++.|||..++|++|+|.+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45688999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
.+
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 188
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=1.7e-16 Score=135.88 Aligned_cols=83 Identities=25% Similarity=0.404 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|||+++++++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345668999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred eecc
Q 006641 102 MYSH 105 (637)
Q Consensus 102 ~~s~ 105 (637)
.|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 189
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=3.8e-17 Score=144.61 Aligned_cols=84 Identities=24% Similarity=0.339 Sum_probs=78.7
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..+.++|||+|||.++|+++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467889999999999999999999999999999999984 688999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98764
No 190
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-17 Score=138.29 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=77.5
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|++|.|+.|. +++++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456889999999999999999999999999999999985 5889999999999999999999999999999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
+.+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 865
No 191
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=6.1e-17 Score=141.33 Aligned_cols=81 Identities=36% Similarity=0.599 Sum_probs=75.7
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
....++|||+|||+++|+++|+++|++||.|.+|+++.| .+++++|||||+|.+.++|.+|++.|||..++|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345688999999999999999999999999999999998 4789999999999999999999999999999999999999
Q ss_pred cc
Q 006641 385 AQ 386 (637)
Q Consensus 385 a~ 386 (637)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 192
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=135.81 Aligned_cols=84 Identities=29% Similarity=0.482 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
.++++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 006641 105 HRDP 108 (637)
Q Consensus 105 ~~~~ 108 (637)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 193
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=1.8e-16 Score=130.17 Aligned_cols=79 Identities=20% Similarity=0.443 Sum_probs=73.1
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
....++|||+|||.++|+++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|+ .+++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 3466789999999999999999999999999999999985 6999999999999999999999 5588899999999987
Q ss_pred c
Q 006641 385 A 385 (637)
Q Consensus 385 a 385 (637)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 194
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.5e-17 Score=135.37 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=77.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeE-EEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEE----E
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTIT-SCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP----L 380 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~-~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~----l 380 (637)
...++|||+|||.++|+++|+++|++||.|. +|+|+.|+ +++++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567899999999999999999999999999 99999995 7899999999999999999999999999999999 9
Q ss_pred EEEEccch
Q 006641 381 YVAVAQRK 388 (637)
Q Consensus 381 ~V~~a~~~ 388 (637)
+|.+|++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998754
No 195
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=2.2e-16 Score=139.44 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=81.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|||+++|+++|+++|+.||.|.+|+|.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCc
Q 006641 102 MYSHRDPS 109 (637)
Q Consensus 102 ~~s~~~~~ 109 (637)
.|+.....
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99976543
No 196
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=8.3e-17 Score=128.21 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
+|||+|||+++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++ +|+..|.|++|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999996 9999999999999885
No 197
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=133.55 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEE-EEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVS-VRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~-i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
........+|||+|||+++||++|+++|+.||.|.+ |+|++| .+++++|||||+|.+.++|++||+. |+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 344556799999999999999999999999999987 999999 7889999999999999999999976 9999999999
Q ss_pred eeeeccCCC
Q 006641 100 RIMYSHRDP 108 (637)
Q Consensus 100 ri~~s~~~~ 108 (637)
+|.++.+..
T Consensus 87 ~v~~~~~~~ 95 (104)
T 1wg5_A 87 EIFKSSRAE 95 (104)
T ss_dssp EEEEECTTT
T ss_pred EEEECCHHH
Confidence 999987654
No 198
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-17 Score=136.16 Aligned_cols=85 Identities=18% Similarity=0.351 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeC-CCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ-SKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~-~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
.......++|||+|||.++++++|+++|+.|| |.+|++.++. .+++++|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34556789999999999999999999999999 9999999998 68999999999999999999999 999999999999
Q ss_pred eeeeccCC
Q 006641 100 RIMYSHRD 107 (637)
Q Consensus 100 ri~~s~~~ 107 (637)
+|.|+...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998754
No 199
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.5e-17 Score=139.23 Aligned_cols=84 Identities=24% Similarity=0.467 Sum_probs=78.5
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeE--------EEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTIT--------SCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~--------~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~ 376 (637)
....++|||+|||.++|+++|+++|++||.|. .|+|+.| .+++++|||||+|.+.++|.+|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678899999999999999999999999999 6999999 68999999999999999999999999999999
Q ss_pred CEEEEEEEccchH
Q 006641 377 RKPLYVAVAQRKE 389 (637)
Q Consensus 377 g~~l~V~~a~~~~ 389 (637)
|++|+|.+++++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998764
No 200
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=136.12 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=76.5
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH--GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~--g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
..+.++|||+|||.++|+++|+++|+.|| |.+|+|+.|.. ++++|||||+|.+.++|.+|+ .||+..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568899999999999999999999999 99999999963 899999999999999999999 999999999999999
Q ss_pred EccchH
Q 006641 384 VAQRKE 389 (637)
Q Consensus 384 ~a~~~~ 389 (637)
+++++.
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998764
No 201
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=133.20 Aligned_cols=85 Identities=15% Similarity=0.211 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
...+...++|||+|||+++||++|+++|+.||.| +|+|++|+ +++++|||||+|.+.++|++|| .+|+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEE
Confidence 3455677999999999999999999999999965 99999998 8999999999999999999999 5899999999999
Q ss_pred eeeccCCC
Q 006641 101 IMYSHRDP 108 (637)
Q Consensus 101 i~~s~~~~ 108 (637)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99886554
No 202
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.9e-17 Score=138.87 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=76.1
Q ss_pred cccccccccCCCCCCCHHHHH---HHHhhcCCeEEEEEeecCC----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 006641 307 LKGANLYLKNLDDSINDEKLK---ELFSEFGTITSCKVMVDQH----GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~---~~F~~~G~i~~~~i~~d~~----g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~ 379 (637)
...++|||+|||+++++++|+ ++|++||.|.+|+|+.|.. ++++|||||+|.+.++|.+|++.|||..++|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999 9999999999999998852 356799999999999999999999999999999
Q ss_pred EEEEEccchH
Q 006641 380 LYVAVAQRKE 389 (637)
Q Consensus 380 l~V~~a~~~~ 389 (637)
|+|.+|+++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998763
No 203
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.3e-17 Score=128.90 Aligned_cols=76 Identities=18% Similarity=0.355 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
++|||+|||+++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++.++ ..|.|++|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999986
No 204
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=135.07 Aligned_cols=87 Identities=22% Similarity=0.418 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCC-eEEEEEe-eeCCCCCcccEEEEEecChHHHHHHHHHcC--CCccCCcc
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQ-VVSVRVC-RDQSKRSSLGYAYVNYSNPQDAANAKEALN--FMPINGKP 98 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~-V~~i~v~-~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln--~~~i~g~~ 98 (637)
.+.++++|||+|||+++++++|+++|+.||. |.+|++. +|+.+++++|||||+|.+.++|++|++.|+ +..|.|+.
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3456899999999999999999999999998 9999999 888889999999999999999999999996 58999999
Q ss_pred eeeeeccCCCc
Q 006641 99 IRIMYSHRDPS 109 (637)
Q Consensus 99 iri~~s~~~~~ 109 (637)
|+|.|+.....
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999986654
No 205
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.9e-16 Score=134.59 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=75.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.++|||+|||.++|+++|+++|++|| |.+|+|+.|. +++++|||||+|.+.++|.+|+ .||+..++|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4567899999999999999999999997 9999999995 6899999999999999999999 99999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 206
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=5.4e-17 Score=129.31 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=70.5
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
+|||+|||.++|+++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|.+|++ +|+..++|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999985 78999999999999999999996 9999999999999875
No 207
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=140.77 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=77.1
Q ss_pred hcccccccccCCCCCCCHHHHH----HHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLK----ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~----~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
..++++|||+||++.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457889999999999999876 6999999999988864 588999999999999999999999999999999999
Q ss_pred EEEccchHHHHH
Q 006641 382 VAVAQRKEERKA 393 (637)
Q Consensus 382 V~~a~~~~~~~~ 393 (637)
|.||+.+.....
T Consensus 104 V~~a~~~~~~~~ 115 (127)
T 2a3j_A 104 ITFSETPQSQVA 115 (127)
T ss_dssp EEECCCCCHHHH
T ss_pred EEEccCcchhcc
Confidence 999998765543
No 208
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=136.94 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=79.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHH---HHHhccCCeEEEEEeeeCCCC---CcccEEEEEecChHHHHHHHHHcCCCccC
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLY---DLFSQVAQVVSVRVCRDQSKR---SSLGYAYVNYSNPQDAANAKEALNFMPIN 95 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~---~~f~~~G~V~~i~v~~d~~t~---~s~g~a~V~F~~~e~A~~Al~~ln~~~i~ 95 (637)
......++|||+|||++++|++|+ ++|+.||+|.+|+|.+|..++ +++|||||+|.+.++|++||+.||+..|.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344567899999999999999999 999999999999999998754 56699999999999999999999999999
Q ss_pred CcceeeeeccCCC
Q 006641 96 GKPIRIMYSHRDP 108 (637)
Q Consensus 96 g~~iri~~s~~~~ 108 (637)
|++|+|.|+...+
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998765
No 209
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=138.58 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLY----DLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK 97 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~----~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~ 97 (637)
....++++|||+|||+++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345568999999999999999865 7999999999998854 567889999999999999999999999999999
Q ss_pred ceeeeeccCCCc
Q 006641 98 PIRIMYSHRDPS 109 (637)
Q Consensus 98 ~iri~~s~~~~~ 109 (637)
+|+|.|+.....
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 999999986643
No 210
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=9.1e-17 Score=137.31 Aligned_cols=83 Identities=25% Similarity=0.492 Sum_probs=77.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKPLYV 382 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~---~g~~l~V 382 (637)
...++|||+|||.++|+++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|.+|++.||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 456789999999999999999999999999999999985 689999999999999999999999999988 8999999
Q ss_pred EEccchH
Q 006641 383 AVAQRKE 389 (637)
Q Consensus 383 ~~a~~~~ 389 (637)
.+++.+.
T Consensus 91 ~~a~~~~ 97 (106)
T 2dgp_A 91 KPADSES 97 (106)
T ss_dssp EECCCCS
T ss_pred EECCccc
Confidence 9998753
No 211
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=7.5e-17 Score=140.54 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc
Q 006641 17 TTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQ---VVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 17 ~~~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~---V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
...........++|||+|||+++||++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++||+ +|+..
T Consensus 7 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~ 84 (118)
T 2db1_A 7 GMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES 84 (118)
T ss_dssp CBCSSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE
T ss_pred CcccCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe
Confidence 3334455567899999999999999999999999998 89999999987 8899999999999999999997 99999
Q ss_pred cCCcceeeeeccCC
Q 006641 94 INGKPIRIMYSHRD 107 (637)
Q Consensus 94 i~g~~iri~~s~~~ 107 (637)
|.|+.|+|.++.++
T Consensus 85 ~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 85 MGHRYIEVFKSHRT 98 (118)
T ss_dssp ETTEEEEEEEECHH
T ss_pred ECCeEEEEEECCHH
Confidence 99999999988543
No 212
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=137.65 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=80.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.....+++|||+|||+++++++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345667999999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred eeccCCC
Q 006641 102 MYSHRDP 108 (637)
Q Consensus 102 ~~s~~~~ 108 (637)
.|+....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997654
No 213
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=136.26 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=74.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|++|+|..+ +.++|||||+|.+.++|.+|++.||+..++|+.|+|.+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 35678999999999999999999999999999999765 5689999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
.+
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 214
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=1.3e-16 Score=142.48 Aligned_cols=86 Identities=24% Similarity=0.410 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...++++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 006641 103 YSHRDP 108 (637)
Q Consensus 103 ~s~~~~ 108 (637)
|+....
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997654
No 215
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=133.07 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|||+++++++|+++|+.||.| +++++ .+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 355678999999999999999999999999977 66776 67889999999999999999999999999999999999
Q ss_pred eeccCCCc
Q 006641 102 MYSHRDPS 109 (637)
Q Consensus 102 ~~s~~~~~ 109 (637)
.|+.....
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99976644
No 216
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=129.85 Aligned_cols=84 Identities=21% Similarity=0.420 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
......++|||+|||+++++++|+++|+.| .|.+|+++++ .+++++|||||+|.+.++|.+|++ ||+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345567999999999999999999999999 9999999999 788999999999999999999998 9999999999999
Q ss_pred eeccCCC
Q 006641 102 MYSHRDP 108 (637)
Q Consensus 102 ~~s~~~~ 108 (637)
.|+...+
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987654
No 217
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-17 Score=135.40 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=75.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.|||..++|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999998888877 57889999999999999999999999999999999999998
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 218
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.1e-17 Score=137.04 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=76.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEE-EEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITS-CKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~-~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||+++|+++|+++|++||.|.+ |.|+.|.+|+++|||||+|.+.++|.+|++. |+..++||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35678999999999999999999999999998 8899998999999999999999999999987 999999999999998
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 219
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=8.2e-17 Score=134.63 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=73.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||+++|+++|+++|++||.|.+++++.+ .+++++|||||+|.+.++|.+|++.||+..++|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4578999999999999999999999999999988887 478899999999999999999999999999999999999886
Q ss_pred c
Q 006641 387 R 387 (637)
Q Consensus 387 ~ 387 (637)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 220
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=144.56 Aligned_cols=81 Identities=21% Similarity=0.342 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVA--QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G--~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
..++|||+|||+++||++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006641 104 SHR 106 (637)
Q Consensus 104 s~~ 106 (637)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 221
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=136.00 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
......++|||+|||.++++++|+++|+.||.|.+|++++|.. +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445689999999999999999999999999999999999864 48899999999999999999999999999999999
Q ss_pred eeccCC
Q 006641 102 MYSHRD 107 (637)
Q Consensus 102 ~~s~~~ 107 (637)
.|+...
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998754
No 222
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-17 Score=137.21 Aligned_cols=80 Identities=13% Similarity=0.231 Sum_probs=74.2
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||+++|+++|+++|++||. .+|+|+.|++++++|||||+|.+.++|.+|+ ++|++.++||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 35678999999999999999999999995 4999999999999999999999999999999 689999999999999887
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 223
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=135.91 Aligned_cols=83 Identities=23% Similarity=0.399 Sum_probs=77.6
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
....++|||+|||+++|+++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|.+|+.. ++..|+|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345688999999999999999999999999999999999 5789999999999999999999988 99999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98764
No 224
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.5e-16 Score=131.20 Aligned_cols=84 Identities=24% Similarity=0.449 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....++++|||+|||+++++++|+++|+.||+|.+|++.++ +|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 344567899999999999999999999999999999999865 37999999999999999999999999999999
Q ss_pred eeeccCCCcc
Q 006641 101 IMYSHRDPSI 110 (637)
Q Consensus 101 i~~s~~~~~~ 110 (637)
|.|+......
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpj_A 83 VRFACHSASL 92 (99)
T ss_dssp EEESSCCSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 225
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-16 Score=135.78 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=71.3
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCEEEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGK--MIGRKPLYVAV 384 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~--~~~g~~l~V~~ 384 (637)
.+.++|||+|||+++++++|+++|++||.|++|.++++ ||||||+|.+.++|.+|++.|++. .+.|++|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45678999999999999999999999999999999865 899999999999999999988754 58999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++.+.
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 98764
No 226
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-17 Score=137.37 Aligned_cols=81 Identities=26% Similarity=0.411 Sum_probs=74.2
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC--CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ--HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~--~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
....++|||+|||.++|+++|+++|++|| |.+|+|+.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568899999999999999999999999 9999999985 7999999999999999999999 999999999999999
Q ss_pred Eccch
Q 006641 384 VAQRK 388 (637)
Q Consensus 384 ~a~~~ 388 (637)
+++++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99875
No 227
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=1.6e-16 Score=135.93 Aligned_cols=79 Identities=23% Similarity=0.199 Sum_probs=71.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFG-TITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G-~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||+++|+++|+++|++|| +|..++|..+ +++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 467899999999999999999999999 9999998643 479999999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
...
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 228
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=7.5e-17 Score=133.40 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=74.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
++|||+|||+++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.+ |.+|++.||+..|.|++|+|.|+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred C
Q 006641 108 P 108 (637)
Q Consensus 108 ~ 108 (637)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 229
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=137.24 Aligned_cols=82 Identities=29% Similarity=0.576 Sum_probs=77.2
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--------CCE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI--------GRK 378 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~--------~g~ 378 (637)
...++|||+|||.++|+++|+++|++||.|.+|+|+.|.++.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 356789999999999999999999999999999999999899999999999999999999999999999 688
Q ss_pred EEEEEEccch
Q 006641 379 PLYVAVAQRK 388 (637)
Q Consensus 379 ~l~V~~a~~~ 388 (637)
+|.|+|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999864
No 230
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=5e-16 Score=142.63 Aligned_cols=87 Identities=26% Similarity=0.419 Sum_probs=81.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...++++|||+|||.++||++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCc
Q 006641 103 YSHRDPS 109 (637)
Q Consensus 103 ~s~~~~~ 109 (637)
|+.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9976443
No 231
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=134.97 Aligned_cols=82 Identities=26% Similarity=0.441 Sum_probs=74.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|++|+|+.|. +|+++|||||+|.+.++|.+|+..+ +..++|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356789999999999999999999999999999999995 6899999999999999999999876 59999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
.++.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 232
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=137.24 Aligned_cols=81 Identities=28% Similarity=0.410 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|| .||+..|.|+.|+|.|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999999999999999999999999999999999999999 999999999999999986
Q ss_pred CC
Q 006641 106 RD 107 (637)
Q Consensus 106 ~~ 107 (637)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 233
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=1.6e-16 Score=140.35 Aligned_cols=84 Identities=21% Similarity=0.460 Sum_probs=78.8
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
...+++|||+|||.++|+++|+++|++||.|.+|.|+.|. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456789999999999999999999999999999999995 889999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
+..+.
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 234
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=129.40 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC--Ccc
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN--GKP 98 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~--g~~ 98 (637)
.....++++|||+|||++++|++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 344556799999999999999999999999999999999865 379999999999999999999999999 999
Q ss_pred eeeeeccCCC
Q 006641 99 IRIMYSHRDP 108 (637)
Q Consensus 99 iri~~s~~~~ 108 (637)
|+|.|+...+
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 235
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=133.90 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC--CccCCccee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF--MPINGKPIR 100 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~--~~i~g~~ir 100 (637)
...++++|||+|||+++||++|+++|+.||.|++|+|+++ +|||||+|.+.++|++|++.|++ ..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456899999999999999999999999999999999987 38999999999999999998874 689999999
Q ss_pred eeeccCCCccc
Q 006641 101 IMYSHRDPSIR 111 (637)
Q Consensus 101 i~~s~~~~~~~ 111 (637)
|.|+.......
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765443
No 236
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=132.03 Aligned_cols=87 Identities=24% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....++++|||+|||+++++++|+++|+.| ..|+++++..+++++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4455678999999999999999999999977 3788999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcc
Q 006641 101 IMYSHRDPSI 110 (637)
Q Consensus 101 i~~s~~~~~~ 110 (637)
|.|+......
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999876543
No 237
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=126.49 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.+.++++|||+|||+++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34568999999999999999999999999999999998 3799999999999999999999999999999999
Q ss_pred eccCCCcc
Q 006641 103 YSHRDPSI 110 (637)
Q Consensus 103 ~s~~~~~~ 110 (637)
|+...+..
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99766543
No 238
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-17 Score=139.22 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=78.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCC---eEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGT---ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~---i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.|..|+++|||||+|.+.++|.+|++ +|+..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999998 999999999889999999999999999999998 99999999999999
Q ss_pred EccchHHHH
Q 006641 384 VAQRKEERK 392 (637)
Q Consensus 384 ~a~~~~~~~ 392 (637)
++.+++...
T Consensus 88 ~a~~~~~~~ 96 (107)
T 2lmi_A 88 EINNEDVDA 96 (107)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 999876543
No 239
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=136.59 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=78.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
..++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++||+. ++..|.|+.|+|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999999999999999999999999999999977 9999999999999997
Q ss_pred CCCcc
Q 006641 106 RDPSI 110 (637)
Q Consensus 106 ~~~~~ 110 (637)
.....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 66543
No 240
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=136.16 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=74.6
Q ss_pred ccccccccCCCCCC------CHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE-EE
Q 006641 308 KGANLYLKNLDDSI------NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK-PL 380 (637)
Q Consensus 308 ~~~~l~V~nL~~~~------t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~-~l 380 (637)
..++|||+|||+.+ |+++|+++|++||.|.+|.|+ ..+|+++|||||+|.+.++|.+|+..|||..++|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 46789999999999 789999999999999999998 56789999999999999999999999999999998 99
Q ss_pred EEEEccch
Q 006641 381 YVAVAQRK 388 (637)
Q Consensus 381 ~V~~a~~~ 388 (637)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999754
No 241
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-16 Score=137.14 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCe-EEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQV-VSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V-~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
....+.++|||+|||+++||++|+++|+.||.| .+|+|++|. +++++|||||+|.+.++|++||+. |+..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345567999999999999999999999999999 899999999 899999999999999999999976 99999999999
Q ss_pred eeeccCC
Q 006641 101 IMYSHRD 107 (637)
Q Consensus 101 i~~s~~~ 107 (637)
|.|+...
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 242
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-16 Score=139.94 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=77.3
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEE-eecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKV-MVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i-~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||+++|+++|+++|+.||.|.++.+ ..+.+|+++|||||+|.+.++|.+|+. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35678999999999999999999999999998544 445789999999999999999999998 9999999999999999
Q ss_pred cchHHHHH
Q 006641 386 QRKEERKA 393 (637)
Q Consensus 386 ~~~~~~~~ 393 (637)
..++....
T Consensus 102 ~~~~~~~~ 109 (124)
T 1wel_A 102 TKKGMLEK 109 (124)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98876543
No 243
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-17 Score=144.75 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=76.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEE--EEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITS--CKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGK----MIGRKP 379 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~--~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~----~~~g~~ 379 (637)
...++|||+|||+++|+++|+++|++||.|.. |+|++|+ +|++||||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999996 899999999999999 999999999999 999999
Q ss_pred EEEEEccch
Q 006641 380 LYVAVAQRK 388 (637)
Q Consensus 380 l~V~~a~~~ 388 (637)
|+|.+++++
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999875
No 244
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=133.06 Aligned_cols=79 Identities=33% Similarity=0.423 Sum_probs=73.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.| +++.+.+++++|||||+|.+.++|.+|++.||+..+.|++|+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456889999999999999999999999987 67777789999999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 90 ~~ 91 (101)
T 2fc9_A 90 PR 91 (101)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 245
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=3.6e-16 Score=137.68 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=75.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||.++|+++|+++|++||.|++|+++.| .+++++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3568999999999999999999999999999999998 48999999999999999999999 899999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 246
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=1.9e-16 Score=133.01 Aligned_cols=85 Identities=28% Similarity=0.426 Sum_probs=77.3
Q ss_pred hcccccccccCCCCCCCHHHHH----HHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLK----ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~----~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
..++++|||+|||.++++++|+ ++|++||.|.+|+++. +|.++|||||+|.+.++|.+|++.|||..++|++|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3467899999999999999999 9999999999999984 477899999999999999999999999999999999
Q ss_pred EEEccchHHHH
Q 006641 382 VAVAQRKEERK 392 (637)
Q Consensus 382 V~~a~~~~~~~ 392 (637)
|.+++++....
T Consensus 83 v~~a~~~~~~~ 93 (97)
T 1nu4_A 83 IQYAKTDSDII 93 (97)
T ss_dssp EEECSSCCTHH
T ss_pred EEEccCCCccc
Confidence 99999876543
No 247
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=131.31 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=75.6
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999995 69999999999999999999998 47899999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
+.+++
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98764
No 248
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=127.99 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=71.6
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
++|||+|||.++|+++|+++|++||.|.+|+++.++ +|+++|||||+|.+.++|.+|++.++ ..++|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999985 68999999999999999999999999 9999999999987
No 249
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=130.90 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC-----
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING----- 96 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g----- 96 (637)
++.....+|||+|||+++|+++|+++|+.||.|.+|+|++| |||||+|.+.++|++||+.||+..|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 44567899999999999999999999999999999999887 799999999999999999999999999
Q ss_pred cceeeeeccCCCc
Q 006641 97 KPIRIMYSHRDPS 109 (637)
Q Consensus 97 ~~iri~~s~~~~~ 109 (637)
+.|+|.|+...+.
T Consensus 83 ~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 83 AYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEESSCCSC
T ss_pred eEEEEEeCCCCCC
Confidence 9999999876543
No 250
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=9e-17 Score=130.08 Aligned_cols=72 Identities=22% Similarity=0.389 Sum_probs=67.7
Q ss_pred ccccccCCCCCC------CHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE-EEEE
Q 006641 310 ANLYLKNLDDSI------NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK-PLYV 382 (637)
Q Consensus 310 ~~l~V~nL~~~~------t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~-~l~V 382 (637)
++|||+|||..+ |+++|+++|++||.|.+|+++ ..+|+++|||||+|.+.++|.+|++.|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 579999999999 679999999999999999988 56789999999999999999999999999999999 8876
No 251
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=136.44 Aligned_cols=81 Identities=26% Similarity=0.413 Sum_probs=76.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||+++|+++|+++|++||.|.+|+|+.| .+++++|||||+|.+.++|.+|++. ++..|+|+.|+|.+++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4578999999999999999999999999999999999 4688999999999999999999987 9999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 764
No 252
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=6.3e-17 Score=133.86 Aligned_cols=80 Identities=29% Similarity=0.465 Sum_probs=72.2
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
++|||+|||.++++++|+++|++||.|.+|+++.|. +|+++|||||+|.+.+ |.+|+..|||..++|++|+|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 469999999999999999999999999999999985 6899999999999999 99999999999999999999999876
Q ss_pred HH
Q 006641 389 EE 390 (637)
Q Consensus 389 ~~ 390 (637)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 253
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=3.5e-16 Score=135.76 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=75.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..+++|||+|||.++|+++|+++|++||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35678999999999999999999999999999999976 5669999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 254
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-17 Score=132.11 Aligned_cols=79 Identities=24% Similarity=0.435 Sum_probs=74.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
++++|||+|||.++++++|+++|++||.|.+|+++.+ .+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 5678999999999999999999999999999999998 478999999999999999999999999999999999887654
No 255
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=5.7e-16 Score=136.38 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=77.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
.++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 689999999999999999999999999999999999999999999999999999999999 8999999999999999875
Q ss_pred CC
Q 006641 107 DP 108 (637)
Q Consensus 107 ~~ 108 (637)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 256
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.6e-17 Score=137.19 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=71.2
Q ss_pred hcccccccccCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEE
Q 006641 306 KLKGANLYLKNLDDS-INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG--KMIGRKPLYV 382 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~-~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g--~~~~g~~l~V 382 (637)
..++++|||+|||++ +|+++|+++|++||.|++|.|++ +||||||+|.+.++|.+|++.|++ ..+.||+|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999998 99999999999999999999974 389999999999999999998864 5699999999
Q ss_pred EEccchH
Q 006641 383 AVAQRKE 389 (637)
Q Consensus 383 ~~a~~~~ 389 (637)
.+++.+.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9998654
No 257
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.9e-16 Score=132.09 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=72.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|.+|+++ +++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 346789999999999999999999999999999998 358999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 258
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.1e-16 Score=132.60 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=72.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-----EEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR-----KPLY 381 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g-----~~l~ 381 (637)
...++|||+|||+++|+++|+++|++||.|++|+|+.| |||||+|.+.++|.+|++.||+..|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 35678999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred EEEccchH
Q 006641 382 VAVAQRKE 389 (637)
Q Consensus 382 V~~a~~~~ 389 (637)
|.+++++.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99999753
No 259
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.4e-16 Score=125.26 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHc-CCCccCCccee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL-NFMPINGKPIR 100 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~l-n~~~i~g~~ir 100 (637)
+....+++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.| ++..|.|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456799999999999999999999999999999999975 479999999999999999989 99999999999
Q ss_pred eeecc
Q 006641 101 IMYSH 105 (637)
Q Consensus 101 i~~s~ 105 (637)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 260
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=3e-16 Score=134.32 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.+....+|||+|||+++++++|+++|+.|| .|..++|..+ +++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344578999999999999999999999999 8999998532 46799999999999999999999999999999999
Q ss_pred eeccCCCccc
Q 006641 102 MYSHRDPSIR 111 (637)
Q Consensus 102 ~~s~~~~~~~ 111 (637)
.|+...+..+
T Consensus 100 ~~a~~~p~~r 109 (111)
T 2jvr_A 100 ERDDNPPPIR 109 (111)
T ss_dssp EESCC-----
T ss_pred EECCCCCCCC
Confidence 9997665543
No 261
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=7.3e-16 Score=142.84 Aligned_cols=88 Identities=24% Similarity=0.362 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...++++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCcc
Q 006641 103 YSHRDPSI 110 (637)
Q Consensus 103 ~s~~~~~~ 110 (637)
|+...+..
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99766543
No 262
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.3e-16 Score=133.06 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.+......+|||+|||+++||++|+++|+.| .|.+|+|++|+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+
T Consensus 10 ~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp CCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 3344456899999999999999999999999 899999999986 889999999999999999999 7999999999999
Q ss_pred eeeccC
Q 006641 101 IMYSHR 106 (637)
Q Consensus 101 i~~s~~ 106 (637)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 987753
No 263
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=9.3e-16 Score=130.23 Aligned_cols=75 Identities=29% Similarity=0.533 Sum_probs=70.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
+.++|||+|||.++|+++|+++|++||.|.+|+++ ++||||+|.+.++|.+|++.||+..+.|++|+|.++++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 56789999999999999999999999999999987 56999999999999999999999999999999999987
Q ss_pred hH
Q 006641 388 KE 389 (637)
Q Consensus 388 ~~ 389 (637)
+.
T Consensus 83 ~~ 84 (103)
T 2dgu_A 83 PD 84 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 264
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.7e-16 Score=126.12 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=71.2
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM-NGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~-~g~~~~g~~l~V~~ 384 (637)
....++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.| ++..++|++|+|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 345678999999999999999999999999999999875 899999999999999999999 99999999999999
Q ss_pred cc
Q 006641 385 AQ 386 (637)
Q Consensus 385 a~ 386 (637)
|+
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 265
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5e-16 Score=130.36 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=72.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC--CEEEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG--RKPLYVAV 384 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~--g~~l~V~~ 384 (637)
.+.++|||+|||.++|+++|+++|++||.|++|+++.+ +|||||+|.+.++|.+|++.||+..+. |++|+|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 45678999999999999999999999999999999865 789999999999999999999999999 99999999
Q ss_pred ccch
Q 006641 385 AQRK 388 (637)
Q Consensus 385 a~~~ 388 (637)
++++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9875
No 266
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-16 Score=134.25 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=75.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCC-eEEEEEe-ecC-CCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGT-ITSCKVM-VDQ-HGFSKGSGFAAFSMPEEATRALNEMN--GKMIGRKPLYV 382 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~-i~~~~i~-~d~-~g~~~g~afV~f~~~~~A~~A~~~~~--g~~~~g~~l~V 382 (637)
..++|||+|||.++|+++|+++|++||. |.+|.++ .|. +|+++|||||+|.+.++|.+|++.|+ +..++|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5678999999999999999999999998 9999998 553 67899999999999999999999996 58999999999
Q ss_pred EEccchHH
Q 006641 383 AVAQRKEE 390 (637)
Q Consensus 383 ~~a~~~~~ 390 (637)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987643
No 267
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-16 Score=137.78 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.+.....+|||+|||+++||++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ ||+..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 344567899999999999999999999999999997788888899999999999999999999998 9999999999999
Q ss_pred eeccCC
Q 006641 102 MYSHRD 107 (637)
Q Consensus 102 ~~s~~~ 107 (637)
.|+...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 268
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.2e-16 Score=131.72 Aligned_cols=79 Identities=25% Similarity=0.433 Sum_probs=74.4
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|||.++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|+..|||..++|++|+|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 446788999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred cchH
Q 006641 386 QRKE 389 (637)
Q Consensus 386 ~~~~ 389 (637)
+++.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 269
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=6.7e-16 Score=150.66 Aligned_cols=81 Identities=14% Similarity=0.315 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVA--QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G--~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
..++|||+|||+++||++|+++|+.|| .|++|+|++|+.|++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006641 104 SHR 106 (637)
Q Consensus 104 s~~ 106 (637)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 270
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-16 Score=133.03 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=70.7
Q ss_pred hcccccccc--cCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-----CCE
Q 006641 306 KLKGANLYL--KNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI-----GRK 378 (637)
Q Consensus 306 ~~~~~~l~V--~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~-----~g~ 378 (637)
..++.+||| +||++++|+++|+++|++||.|++|.++.+ ||||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 346778999 669999999999999999999999988643 89999999999999999999999998 799
Q ss_pred EEEEEEccch
Q 006641 379 PLYVAVAQRK 388 (637)
Q Consensus 379 ~l~V~~a~~~ 388 (637)
+|+|.+++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999999753
No 271
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.2e-16 Score=131.48 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC--CCccCCcc
Q 006641 22 PSGYGNVSLYVGDLEQN-VNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN--FMPINGKP 98 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~-~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln--~~~i~g~~ 98 (637)
....++++|||+|||++ ++|++|+++|+.||.|.+|+|.++ +|||||+|.+.++|++|++.|+ ...|.|++
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34567899999999998 999999999999999999999753 4899999999999999999886 45699999
Q ss_pred eeeeeccCCCc
Q 006641 99 IRIMYSHRDPS 109 (637)
Q Consensus 99 iri~~s~~~~~ 109 (637)
|+|.|++....
T Consensus 94 l~V~~a~~~~~ 104 (112)
T 1x4f_A 94 VKVDLSEKYKK 104 (112)
T ss_dssp CEEEEECSCSS
T ss_pred EEEEECccccc
Confidence 99999976543
No 272
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=130.01 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCcc--------
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI-------- 94 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i-------- 94 (637)
...+.++|||+|||+++++++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred CCcceeeeeccC
Q 006641 95 NGKPIRIMYSHR 106 (637)
Q Consensus 95 ~g~~iri~~s~~ 106 (637)
.+++|+|.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 567788888753
No 273
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=6.6e-16 Score=124.94 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc-ce
Q 006641 27 NVSLYVGDLEQNV------NESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK-PI 99 (637)
Q Consensus 27 ~~~L~V~nLp~~~------te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~-~i 99 (637)
+++|||+|||.++ ++++|+++|+.||+|.+|++. +.+++++|||||+|.+.++|++|++.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999988 35778999999999999999999999999999999 88
Q ss_pred ee
Q 006641 100 RI 101 (637)
Q Consensus 100 ri 101 (637)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 87
No 274
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=6.8e-16 Score=132.11 Aligned_cols=78 Identities=26% Similarity=0.566 Sum_probs=72.9
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|||.++|+++|+++|++||.|++|+++ +|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567889999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred cchHH
Q 006641 386 QRKEE 390 (637)
Q Consensus 386 ~~~~~ 390 (637)
+.+..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87654
No 275
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8e-16 Score=127.18 Aligned_cols=76 Identities=18% Similarity=0.422 Sum_probs=71.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|++|+++ +|||||+|.+.++|.+|++.||+..++|++|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 356789999999999999999999999999999997 6899999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 276
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=126.75 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.....+++|||+|||+++++++|+++|+.||.|. ++++.+ +++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445689999999999999999999999999996 677655 45689999999999999999999999999999999
Q ss_pred eeccCC
Q 006641 102 MYSHRD 107 (637)
Q Consensus 102 ~~s~~~ 107 (637)
.|+...
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998764
No 277
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.4e-15 Score=127.59 Aligned_cols=76 Identities=24% Similarity=0.392 Sum_probs=71.3
Q ss_pred hcccccccccCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDD-SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~-~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..+.++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678899999998 99999999999999999999993 89999999999999999999999999999999999
Q ss_pred ccch
Q 006641 385 AQRK 388 (637)
Q Consensus 385 a~~~ 388 (637)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9865
No 278
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=129.76 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCC------cHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc-
Q 006641 25 YGNVSLYVGDLEQNV------NESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK- 97 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~------te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~- 97 (637)
..+++|||+|||+++ |+++|+++|+.||+|.+|++. +.+++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 889999999999999999998 35678999999999999999999999999999998
Q ss_pred ceeeeeccC
Q 006641 98 PIRIMYSHR 106 (637)
Q Consensus 98 ~iri~~s~~ 106 (637)
+|+|.|+..
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 999999864
No 279
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=130.95 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=72.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.+.++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|||..++|++|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 45678999999999999999999999999999999865 8999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 88 ~~ 89 (99)
T 2cpj_A 88 HS 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 280
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=1.1e-16 Score=142.67 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=75.5
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||+++|+++|+++|++|| |++|+|+.|++|+++|||||+|.+.++|.+|+ .+|+..++||.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3567899999999999999999999999 77999999988999999999999999999999 899999999999999988
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
.++
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 281
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=5.9e-16 Score=137.58 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQ---VVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~---V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
+.....++|||+|||+++||++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++||+ ||+..|.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999999 89999999988 8999999999999999999998 9999999999
Q ss_pred eeeeeccC
Q 006641 99 IRIMYSHR 106 (637)
Q Consensus 99 iri~~s~~ 106 (637)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998854
No 282
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=2.5e-16 Score=137.68 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=74.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeE--EEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTIT--SCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~--~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
...++|||+|||+++|+++|+++|++| .|. +|+|+.|++|+++|||||+|.+.++|.+|++ +++..|+||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 356789999999999999999999999 677 9999999889999999999999999999996 577999999999999
Q ss_pred ccchHH
Q 006641 385 AQRKEE 390 (637)
Q Consensus 385 a~~~~~ 390 (637)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 987653
No 283
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=5.2e-16 Score=130.27 Aligned_cols=84 Identities=26% Similarity=0.505 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLY----DLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~----~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
...++++|||+|||+++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45578999999999999999999 9999999999999874 4567799999999999999999999999999999
Q ss_pred eeeeeccCCCc
Q 006641 99 IRIMYSHRDPS 109 (637)
Q Consensus 99 iri~~s~~~~~ 109 (637)
|+|.|+..++.
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987643
No 284
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=3.8e-16 Score=124.30 Aligned_cols=75 Identities=15% Similarity=0.359 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
+|||+|||+++++++|+++|+.||+|.+|++.+|+.+++++|||||+|.+.++|++|++ +++..|.|+.|+|.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5888999999999875
No 285
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=130.07 Aligned_cols=82 Identities=23% Similarity=0.499 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
....++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999987 37999999999999999999999999999999999
Q ss_pred ccCCCccc
Q 006641 104 SHRDPSIR 111 (637)
Q Consensus 104 s~~~~~~~ 111 (637)
+...+...
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 98776544
No 286
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-16 Score=131.98 Aligned_cols=76 Identities=22% Similarity=0.426 Sum_probs=72.3
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
++|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||..++|+.|+|.+++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 46999999999999999999999999999999987 68999999999999999999999999999999999998764
No 287
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=9.9e-16 Score=137.88 Aligned_cols=79 Identities=27% Similarity=0.473 Sum_probs=74.3
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|||+|||.++|+++|+++|++||.|++++|+.| .+++++|||||+|.+.++|.+|++.|||..++|++|+|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999998 57899999999999999999999999999999999999986
No 288
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-16 Score=132.95 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.....++|||+|||+++|+++|+++|+.||.|.+ +++.+..+++++|||||+|.+.++|++||+ ||+..|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 778888888999999999999999999998 99999999999999
Q ss_pred eccCCC
Q 006641 103 YSHRDP 108 (637)
Q Consensus 103 ~s~~~~ 108 (637)
|+....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997654
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-15 Score=128.54 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.+..+++|||+|||.++++++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34457899999999999999999999999999999998 345899999999999999999999999999999999
Q ss_pred eccC
Q 006641 103 YSHR 106 (637)
Q Consensus 103 ~s~~ 106 (637)
|+..
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9864
No 290
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.6e-16 Score=132.55 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=71.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++|||+|||.++|+++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|++.|||..++|++|+|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 467899999999999999999999999999999874 489999999999999999999999999999999999975
Q ss_pred h
Q 006641 388 K 388 (637)
Q Consensus 388 ~ 388 (637)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 291
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.6e-15 Score=129.84 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....++++|||+|||.++++++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455678999999999999999999999999999999998 38999999999999999999999999999999
Q ss_pred eeeccCCC
Q 006641 101 IMYSHRDP 108 (637)
Q Consensus 101 i~~s~~~~ 108 (637)
|.|+...+
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99997654
No 292
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.6e-16 Score=133.30 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...++++|||+|||+++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999998544443333378889999999999999999999999999999999999
Q ss_pred eccCCCc
Q 006641 103 YSHRDPS 109 (637)
Q Consensus 103 ~s~~~~~ 109 (637)
|+.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9976543
No 293
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=124.38 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.....++++|||+|||+++++++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 345567899999999999999999999999999999999743 999999999999999999999999999999
Q ss_pred eeeccCCCc
Q 006641 101 IMYSHRDPS 109 (637)
Q Consensus 101 i~~s~~~~~ 109 (637)
|.|+.....
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999976543
No 294
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-15 Score=120.22 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCCcHHH----HHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 27 NVSLYVGDLEQNVNESQ----LYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~----L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.+.|||+|||.++++++ |+++|+.|| .|++| |+ |+|||.|.+.++|.+|++.||+..+.||+|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999988 568999995 99998 33 89999999999999999999999999999999
Q ss_pred eeccCCCccc
Q 006641 102 MYSHRDPSIR 111 (637)
Q Consensus 102 ~~s~~~~~~~ 111 (637)
.|++.+....
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9998776554
No 295
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=7.8e-16 Score=131.65 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQ---VVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~---V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
.......+|||+|||+++|+++|+++|+.||. |.+|++++|+. ++++|||||+|.+.++|++||+ +|+..|.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34556889999999999999999999999998 99999999988 8999999999999999999997 9999999999
Q ss_pred eeeeeccC
Q 006641 99 IRIMYSHR 106 (637)
Q Consensus 99 iri~~s~~ 106 (637)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998864
No 296
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.1e-15 Score=130.59 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=72.2
Q ss_pred ccccccCC----CCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 006641 310 ANLYLKNL----DDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSM----PEE----ATRALN--EMNGKM 374 (637)
Q Consensus 310 ~~l~V~nL----~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~----~~~----A~~A~~--~~~g~~ 374 (637)
++|||+|| ++.+++++|+++|+.||+|.+|+++.|+ +|+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999995 88999999999996 433 899998 789999
Q ss_pred eCCEEEEEEEccchH
Q 006641 375 IGRKPLYVAVAQRKE 389 (637)
Q Consensus 375 ~~g~~l~V~~a~~~~ 389 (637)
|+|++|+|.+.+...
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999997654
No 297
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.3e-16 Score=128.99 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=72.0
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||+++|+++|+++|++||.|. ++++.+ +++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3467899999999999999999999999997 677654 579999999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 298
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=124.32 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...++++|||+|||+++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4556889999999999999999999999999999999843 89999999999999999999999999999999
Q ss_pred eccCCCc
Q 006641 103 YSHRDPS 109 (637)
Q Consensus 103 ~s~~~~~ 109 (637)
|+.....
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 299
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=125.23 Aligned_cols=76 Identities=18% Similarity=0.423 Sum_probs=71.1
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|||.++|+++|+++|++||.|++|+++ ++||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3456889999999999999999999999999999997 459999999999999999999999999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
+++
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 865
No 300
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=6.5e-16 Score=130.98 Aligned_cols=83 Identities=20% Similarity=0.466 Sum_probs=76.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|.+|+++.|.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35678999999999999999999999999999999999989999999999999999999997 9999999999999998
Q ss_pred chHHH
Q 006641 387 RKEER 391 (637)
Q Consensus 387 ~~~~~ 391 (637)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77543
No 301
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=3.5e-16 Score=124.54 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=69.5
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
+|||+|||.++|+++|+++|++||.|.+|.++.|. +++++|||||+|.+.++|.+|++ +++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 48999999999999999999999999999999984 68899999999999999999996 5889999999999875
No 302
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=5e-16 Score=165.84 Aligned_cols=157 Identities=20% Similarity=0.388 Sum_probs=114.2
Q ss_pred CCCCCCcHHHHHHHHhccCCeEEEEEee----eC-CCCCcccEE--EEEecChHHHHHHHHHcCCCccCCc---------
Q 006641 34 DLEQNVNESQLYDLFSQVAQVVSVRVCR----DQ-SKRSSLGYA--YVNYSNPQDAANAKEALNFMPINGK--------- 97 (637)
Q Consensus 34 nLp~~~te~~L~~~f~~~G~V~~i~v~~----d~-~t~~s~g~a--~V~F~~~e~A~~Al~~ln~~~i~g~--------- 97 (637)
.||++ |..+|..+++|..|..+. +. .+....|++ |+.|.+..++..++..++......+
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 35654 788999999998884433 22 222223344 7888876665544433332221111
Q ss_pred ------ceeeeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHH
Q 006641 98 ------PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQ 170 (637)
Q Consensus 98 ------~iri~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~ 170 (637)
.+.+.....++........+|||+|||..+++++|.++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.
T Consensus 79 ~~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 79 QQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred HHHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 122222222333334455789999999999999999999999999999999986 8999999999999999999
Q ss_pred HHHHHhcCCeeCCeeeEEeeeehhh
Q 006641 171 NAIKMLNGMLINDKQVYVGLFVRRQ 195 (637)
Q Consensus 171 ~Ai~~lng~~i~~~~l~V~~~~~~~ 195 (637)
.||+.||+..|.++.|.|.+...+.
T Consensus 159 ~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 159 SAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred HHHHHcCCCEECCEEEEEEEeCCCC
Confidence 9999999999999999999987543
No 303
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=7.9e-16 Score=128.86 Aligned_cols=78 Identities=28% Similarity=0.391 Sum_probs=71.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|..+ +.+++++|||||+|.+.++|.+|+..|||..++|++|+|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356789999999999999999999999988776 4568899999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 304
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=3.1e-15 Score=125.37 Aligned_cols=79 Identities=20% Similarity=0.384 Sum_probs=70.9
Q ss_pred CCCCCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 21 VPSGYGNVSLYVGDLEQ-NVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~-~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
....+++++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556789999999998 99999999999999999999983 4899999999999999999999999999999
Q ss_pred eeeeccCC
Q 006641 100 RIMYSHRD 107 (637)
Q Consensus 100 ri~~s~~~ 107 (637)
+|.|+...
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998654
No 305
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=124.69 Aligned_cols=75 Identities=21% Similarity=0.439 Sum_probs=70.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...++|||+|||.++|+++|+++|++||.|++|+++ ++||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 457889999999999999999999999999999997 4499999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 306
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=125.77 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=75.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEE-EEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc
Q 006641 19 AAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSV-RVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK 97 (637)
Q Consensus 19 ~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i-~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~ 97 (637)
.+.+....+++|||+|||+++++++|+++|+.||.|.+| .+.+++.++ .|||+|.+.++|++|++.||+..|.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 7 GSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp SCCCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 344455668999999999999999999999999999999 488887654 499999999999999999999999999
Q ss_pred ceeeeeccCC
Q 006641 98 PIRIMYSHRD 107 (637)
Q Consensus 98 ~iri~~s~~~ 107 (637)
+|+|.|+.+.
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 9999999765
No 307
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=3.9e-15 Score=128.00 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 23 SGYGNVSLYVGDLEQN-VNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~-~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
+...+++|||+|||++ +++++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 3489999999999999999999999999999999
Q ss_pred eeccCCCc
Q 006641 102 MYSHRDPS 109 (637)
Q Consensus 102 ~~s~~~~~ 109 (637)
.|+.....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99975443
No 308
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=8.2e-17 Score=140.01 Aligned_cols=83 Identities=23% Similarity=0.493 Sum_probs=77.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEE--------EEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITS--------CKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~--------~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~ 378 (637)
+.++|||+|||.++|+++|+++|++||.|.+ |+|+.| .+++++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4678999999999999999999999999999 899998 5789999999999999999999999999999999
Q ss_pred EEEEEEccchHH
Q 006641 379 PLYVAVAQRKEE 390 (637)
Q Consensus 379 ~l~V~~a~~~~~ 390 (637)
+|+|.+++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987653
No 309
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=7e-16 Score=129.18 Aligned_cols=77 Identities=23% Similarity=0.364 Sum_probs=71.1
Q ss_pred hcccccccccCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDD-SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~-~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..+.++|||+|||+ ++|+++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999998 99999999999999999999994 79999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++.+.
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 98764
No 310
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=1.3e-15 Score=142.42 Aligned_cols=83 Identities=29% Similarity=0.494 Sum_probs=78.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..+++|||+|||.++++++|+++|++||.|++|.|+.|.++.++|||||+|.+.++|.+|++.|||..++|++|+|.+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 653
No 311
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.2e-15 Score=125.16 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 23 SGYGNVSLYVGDLEQ-NVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~-~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
...++++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..+.|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 445689999999998 99999999999999999999984 489999999999999999999999999999999
Q ss_pred eeccCCC
Q 006641 102 MYSHRDP 108 (637)
Q Consensus 102 ~~s~~~~ 108 (637)
.|+....
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9987654
No 312
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=130.28 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
.+.+++|||+|||+++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999875 347999999999999999999999999999999999
Q ss_pred ccCCC
Q 006641 104 SHRDP 108 (637)
Q Consensus 104 s~~~~ 108 (637)
+..+.
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97643
No 313
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=6.3e-15 Score=124.96 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=73.6
Q ss_pred hcccccccccCCCC-----CCCHHHHHHHHhhcCCeEEEEEeecC--CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 006641 306 KLKGANLYLKNLDD-----SINDEKLKELFSEFGTITSCKVMVDQ--HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378 (637)
Q Consensus 306 ~~~~~~l~V~nL~~-----~~t~e~L~~~F~~~G~i~~~~i~~d~--~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~ 378 (637)
..++++|+|+|+-. +-++++|+++|++||.|++|.|++++ +++++|||||+|.+.++|.+|++.|||+.++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34677899999962 23789999999999999999999985 368999999999999999999999999999999
Q ss_pred EEEEEEccch
Q 006641 379 PLYVAVAQRK 388 (637)
Q Consensus 379 ~l~V~~a~~~ 388 (637)
.|+|.++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999864
No 314
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=8.2e-16 Score=138.97 Aligned_cols=86 Identities=26% Similarity=0.441 Sum_probs=74.5
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEE------EEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSC------KVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~------~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~ 379 (637)
..+.++|||+|||+++|+++|+++|++||.|.+| .+....+|+++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3467889999999999999999999999999875 2222246889999999999999999999999999999999
Q ss_pred EEEEEccchHHH
Q 006641 380 LYVAVAQRKEER 391 (637)
Q Consensus 380 l~V~~a~~~~~~ 391 (637)
|+|.+|+....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999765443
No 315
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=2.6e-15 Score=123.59 Aligned_cols=78 Identities=15% Similarity=0.355 Sum_probs=63.7
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM--IGRKPLYVA 383 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~--~~g~~l~V~ 383 (637)
..+.++|||+|||+++|+++|+++|++||.|++|+|+.+ +||||||+|.+.++|.+ +++.. +.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 346788999999999999999999999999999999975 79999999999999984 45544 569999999
Q ss_pred EccchHHH
Q 006641 384 VAQRKEER 391 (637)
Q Consensus 384 ~a~~~~~~ 391 (637)
+|.++..+
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99987643
No 316
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=2.6e-15 Score=123.51 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=70.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++|||+|||+++++++|+++|++| .|.+|++. +++|||||+|.+.++|.+|++.|||..++|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35789999999999999999999999 99999984 5799999999999999999999999999999999999875
Q ss_pred h
Q 006641 388 K 388 (637)
Q Consensus 388 ~ 388 (637)
+
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 317
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=4.2e-15 Score=138.93 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
....+++|||+|||+++++++|+++|+.||+|++|+|+.|. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999999 88999999999999999999999999999999999999
Q ss_pred eccCC
Q 006641 103 YSHRD 107 (637)
Q Consensus 103 ~s~~~ 107 (637)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98654
No 318
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-16 Score=138.95 Aligned_cols=87 Identities=22% Similarity=0.411 Sum_probs=81.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEE--------EEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVS--------VRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~--------i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
.++++|||+|||.++++++|+++|+.||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cceeeeeccCCCccc
Q 006641 97 KPIRIMYSHRDPSIR 111 (637)
Q Consensus 97 ~~iri~~s~~~~~~~ 111 (637)
++|+|.|+...+...
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999998765543
No 319
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.5e-15 Score=125.02 Aligned_cols=75 Identities=28% Similarity=0.472 Sum_probs=70.3
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhc--CCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEF--GTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~--G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
.+.++|||+|||+++|+++|+++|++| |.|.+|++. +|||||+|.+.++|.+|+..|||..++|++|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356789999999999999999999999 999999875 68999999999999999999999999999999999
Q ss_pred ccch
Q 006641 385 AQRK 388 (637)
Q Consensus 385 a~~~ 388 (637)
++++
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9875
No 320
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=126.76 Aligned_cols=81 Identities=28% Similarity=0.419 Sum_probs=73.6
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
..+.++|||+|||.++|+++|+++|+.|+ +|+++.+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44678899999999999999999999873 6778887 4789999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98764
No 321
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=121.64 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
....++++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557899999997 89999999999999999999984 45589999999999999999999999999999999
Q ss_pred eeccCCCcc
Q 006641 102 MYSHRDPSI 110 (637)
Q Consensus 102 ~~s~~~~~~ 110 (637)
.|+...+..
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999776543
No 322
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-15 Score=131.74 Aligned_cols=80 Identities=30% Similarity=0.434 Sum_probs=72.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeE----EEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTIT----SCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~----~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V 382 (637)
.+.++|||+|||.++|+++|+++|++||.|. .+++. +++++|||||+|.+.++|.+|++.|||..++|++|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3568899999999999999999999999994 44444 6889999999999999999999999999999999999
Q ss_pred EEccchH
Q 006641 383 AVAQRKE 389 (637)
Q Consensus 383 ~~a~~~~ 389 (637)
.+++++.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9998764
No 323
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=5.5e-15 Score=125.41 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
.++++|||+|||+++|+++|+++|+.||.|.+|++.+ |||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999873 59999999999999999999999999999999999
Q ss_pred cCCCc
Q 006641 105 HRDPS 109 (637)
Q Consensus 105 ~~~~~ 109 (637)
.....
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76544
No 324
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=3.2e-15 Score=135.47 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=70.8
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEcc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR--KPLYVAVAQ 386 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g--~~l~V~~a~ 386 (637)
..+|||+||++.+|+++|+++|++||+|++|+|+.+. ++|||||+|.+.++|.+|++.|||..|.| ++|+|.|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4568999999999999999999999999999997543 57999999999999999999999999955 999999999
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 325
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=3.4e-15 Score=130.47 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeE--EEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVV--SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~--~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
......+|||+|||+++||++|+++|+.| .|. +|+|++|+. ++++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 44567899999999999999999999999 677 999999988 8999999999999999999996 477999999999
Q ss_pred eeeccC
Q 006641 101 IMYSHR 106 (637)
Q Consensus 101 i~~s~~ 106 (637)
|.++.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 326
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=125.87 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=68.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCC-eEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceeCCEEEEEEEc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGT-ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGRKPLYVAVA 385 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~-i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g-~~~~g~~l~V~~a 385 (637)
..++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|++|+|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 5678999999999999999999999999 6666663 489999999999999999999999 9999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
+++
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 875
No 327
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-16 Score=133.12 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=73.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||.++|+++|+++|++||.|.+ .++.+ .+++++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5678999999999999999999999999988 55555 578899999999999999999998 99999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=3.4e-15 Score=122.79 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
+++++|||+|||++++|++|+++|+.| .|.+|++. +++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999984 56799999999999999999999999999999999999
Q ss_pred cCCCcc
Q 006641 105 HRDPSI 110 (637)
Q Consensus 105 ~~~~~~ 110 (637)
..+...
T Consensus 76 ~~~~~~ 81 (88)
T 1wg1_A 76 PTDALL 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCceE
Confidence 877543
No 329
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1e-15 Score=136.45 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.....++|||+|||+++||++|+++|+.|| |.+|+|++|+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 66999999986 899999999999999999999 899999999999999
Q ss_pred eccCCC
Q 006641 103 YSHRDP 108 (637)
Q Consensus 103 ~s~~~~ 108 (637)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 887654
No 330
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=124.68 Aligned_cols=80 Identities=28% Similarity=0.429 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCC-eEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC-CccCCccee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQ-VVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF-MPINGKPIR 100 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~-V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~-~~i~g~~ir 100 (637)
.+.+.++|||+|||+++||++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3446789999999999999999999999999 6666652 358999999999999999999999 999999999
Q ss_pred eeeccCCCc
Q 006641 101 IMYSHRDPS 109 (637)
Q Consensus 101 i~~s~~~~~ 109 (637)
|.|+.....
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999976543
No 331
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=122.05 Aligned_cols=80 Identities=28% Similarity=0.381 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcc--CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQV--AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~--G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
....++++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344568999999999999999999999999 899998875 3699999999999999999999999999999
Q ss_pred eeeeccCCCc
Q 006641 100 RIMYSHRDPS 109 (637)
Q Consensus 100 ri~~s~~~~~ 109 (637)
+|.|+.....
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 332
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.3e-15 Score=127.51 Aligned_cols=82 Identities=21% Similarity=0.425 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
...+++|||+|||+++++++|+++|+.||.|.+|++.+|. +++++|||||+|.+.++|++|++ ++..+.|+.|+|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999997 88899999999999
Q ss_pred ccCCC
Q 006641 104 SHRDP 108 (637)
Q Consensus 104 s~~~~ 108 (637)
+....
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 86543
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=1.4e-14 Score=131.29 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC--cceeeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING--KPIRIMY 103 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g--~~iri~~ 103 (637)
...+|||+||++++||++|+++|++||.|++|+|..+. +.|||||+|.+.++|++|++.||+..|.| ++|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34678999999999999999999999999999997543 45899999999999999999999999966 9999999
Q ss_pred ccCCC
Q 006641 104 SHRDP 108 (637)
Q Consensus 104 s~~~~ 108 (637)
++...
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98764
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.1e-15 Score=123.68 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=70.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.+.++|||+|| ++|+++|+++|++||.|.+|+|. +++|||||+|.+.++|.+|+..|||..++|++|+|.+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45678999996 89999999999999999999994 468999999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 335
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=3.7e-15 Score=128.19 Aligned_cols=74 Identities=23% Similarity=0.528 Sum_probs=70.0
Q ss_pred ccccccccCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDS-INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~-~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||++ +|+++|+++|++||.|++|++ ++|||||+|.+.++|.+|++.||+..++|+.|+|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4578999999999 999999999999999999999 48999999999999999999999999999999999998
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
.+
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 336
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=6.7e-15 Score=128.45 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=70.1
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEcc
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGS-GFAAFSMPEEATRALNEMNGKMIGR--KPLYVAVAQ 386 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~-afV~f~~~~~A~~A~~~~~g~~~~g--~~l~V~~a~ 386 (637)
..|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 45889999999999999999999999999998865 3688 9999999999999999999999987 999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
.++
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 763
No 337
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-15 Score=124.84 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
...+.++|||+|||+++++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44568999999999999999999999999987665 3457788999999999999999999999999999999999
Q ss_pred eccCCC
Q 006641 103 YSHRDP 108 (637)
Q Consensus 103 ~s~~~~ 108 (637)
|+....
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=2.9e-14 Score=124.47 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccE-EEEEecChHHHHHHHHHcCCCccCC--cceeeee
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGY-AYVNYSNPQDAANAKEALNFMPING--KPIRIMY 103 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~-a~V~F~~~e~A~~Al~~ln~~~i~g--~~iri~~ 103 (637)
--.|||+||++++||++|+++|++||.|.+|++.++. +|+ |||+|.+.++|++|++.||+..|.| +.|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3567799999999999999999999999999998754 266 9999999999999999999999988 8999999
Q ss_pred ccCCCc
Q 006641 104 SHRDPS 109 (637)
Q Consensus 104 s~~~~~ 109 (637)
++.+..
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 987643
No 339
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=119.21 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=64.9
Q ss_pred ccc-ccccCCCCCCCHHH----HHHHHhhc-CCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 006641 309 GAN-LYLKNLDDSINDEK----LKELFSEF-GTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382 (637)
Q Consensus 309 ~~~-l~V~nL~~~~t~e~----L~~~F~~~-G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V 382 (637)
..+ |||+|||+.+++++ |+++|++| |+|.+| ++ |||||.|.+.++|.+|++.|+|..+.||+|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 444 99999999999988 55899999 599998 23 99999999999999999999999999999999
Q ss_pred EEccchH
Q 006641 383 AVAQRKE 389 (637)
Q Consensus 383 ~~a~~~~ 389 (637)
.+|+.+.
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998763
No 340
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.2e-15 Score=123.35 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=71.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEE-EeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCK-VMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~-i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||+|||+++|+++|+++|++||.|.+|+ ++.+.. .|.|||+|.+.++|.+|+..|||..++|++|+|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999994 777742 2349999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
+++
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 341
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=119.16 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
....++|||+|||+++||++|+++|+.||.|.+| ..++.+++ ||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 66666654 99999999999999998 999999999999999
Q ss_pred ccCCC
Q 006641 104 SHRDP 108 (637)
Q Consensus 104 s~~~~ 108 (637)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86544
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=5.7e-15 Score=127.97 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=66.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEE-----EEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP-----LYV 382 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~-----l~V 382 (637)
..++|||+|||+++|+++|+++|++||+|++|.|+.| |||||+|.+.++|.+||+.|||..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4678999999999999999999999999999999876 89999999999999999999999999998 677
Q ss_pred EEccc
Q 006641 383 AVAQR 387 (637)
Q Consensus 383 ~~a~~ 387 (637)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 66665
No 343
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=1.3e-14 Score=126.10 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=68.2
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEcc
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGS-GFAAFSMPEEATRALNEMNGKMIGR--KPLYVAVAQ 386 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~-afV~f~~~~~A~~A~~~~~g~~~~g--~~l~V~~a~ 386 (637)
..|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34789999999999999999999999999999753 386 9999999999999999999999977 699999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 344
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.3e-15 Score=128.51 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCe----EEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQV----VSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V----~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
.....+|||+|||+++||++|+++|+.||.| .+|+|++|. +++++|||||+|.+.++|++||+. |+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 699999994 799999999999999999999975 9999999999
Q ss_pred eeeecc
Q 006641 100 RIMYSH 105 (637)
Q Consensus 100 ri~~s~ 105 (637)
+|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 987764
No 345
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=121.28 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=66.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++|||+|||+++|+++|+++|++||.|.+| +....+++ ||||+|.+.++|.+|+. |||..++|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34689999999999999999999999999998 33323443 99999999999999998 999999999999998875
Q ss_pred h
Q 006641 388 K 388 (637)
Q Consensus 388 ~ 388 (637)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 346
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=123.52 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=70.6
Q ss_pred CCCCCcEEEE--cCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCcc-----C
Q 006641 23 SGYGNVSLYV--GDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI-----N 95 (637)
Q Consensus 23 ~~~~~~~L~V--~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i-----~ 95 (637)
...++++||| +||+.+++|++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.||+..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3345789999 779999999999999999999999988653 48999999999999999999999887 6
Q ss_pred CcceeeeeccCCCc
Q 006641 96 GKPIRIMYSHRDPS 109 (637)
Q Consensus 96 g~~iri~~s~~~~~ 109 (637)
|++++|.|+..-+.
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 88999988765443
No 347
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.1e-14 Score=124.30 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=71.3
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecC----hHH----HHHHHH--HcCCCc
Q 006641 28 VSLYVGDL----EQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSN----PQD----AANAKE--ALNFMP 93 (637)
Q Consensus 28 ~~L~V~nL----p~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~----~e~----A~~Al~--~ln~~~ 93 (637)
..|||+|| |+.++|++|+++|+.||+|.++++..|+.|++|+|||||+|.+ +++ |.+|++ .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 444 899998 789999
Q ss_pred cCCcceeeeecc
Q 006641 94 INGKPIRIMYSH 105 (637)
Q Consensus 94 i~g~~iri~~s~ 105 (637)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998653
No 348
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=4.5e-15 Score=134.10 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEE-----eeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRV-----CRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK 97 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v-----~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~ 97 (637)
+..++++|||+|||+++|+++|+++|+.||.|.++.+ ++...+++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999999999877411 22234678889999999999999999999999999999
Q ss_pred ceeeeeccCC
Q 006641 98 PIRIMYSHRD 107 (637)
Q Consensus 98 ~iri~~s~~~ 107 (637)
.|+|.|+...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999654
No 349
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=1.2e-13 Score=120.01 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=67.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccE-EEEEecChHHHHHHHHHcCCCccCC--cceeeeec
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGY-AYVNYSNPQDAANAKEALNFMPING--KPIRIMYS 104 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~-a~V~F~~~e~A~~Al~~ln~~~i~g--~~iri~~s 104 (637)
..|||+||++.+|+++|+++|+.||.|++|+|.+ + + |+ |||+|.+.++|++|++.||+..|.| +.|+|.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----N-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----S-SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----C-CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4568999999999999999999999999999965 2 1 75 9999999999999999999999987 68999999
Q ss_pred cCCC
Q 006641 105 HRDP 108 (637)
Q Consensus 105 ~~~~ 108 (637)
+...
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.51 E-value=3e-14 Score=116.80 Aligned_cols=70 Identities=23% Similarity=0.451 Sum_probs=66.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhc----C-------CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEF----G-------TITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~----G-------~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~ 376 (637)
+.++|||+|||.++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999 8 9999999765 899999999999999999 99999999
Q ss_pred CEEEEEE
Q 006641 377 RKPLYVA 383 (637)
Q Consensus 377 g~~l~V~ 383 (637)
|+.|+|+
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999996
No 351
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=2.8e-14 Score=123.56 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc-----e
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP-----I 99 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~-----i 99 (637)
....+|||+|||+++++++|+++|+.||+|.+|+|+.| |||||+|.+.++|++||+.||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 56789999999999999999999999999999999877 79999999999999999999999999999 5
Q ss_pred eeeecc
Q 006641 100 RIMYSH 105 (637)
Q Consensus 100 ri~~s~ 105 (637)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 555543
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=4.9e-14 Score=123.02 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.....+++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457899999996 69999999999999999999985 45589999999999999999999999999999999
Q ss_pred eeccCCCc
Q 006641 102 MYSHRDPS 109 (637)
Q Consensus 102 ~~s~~~~~ 109 (637)
.|+...+.
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987654
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=4.2e-14 Score=134.15 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=74.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++|||+|||+++|+++|+++|++||.|.+|+++++.+++++|||||+|.+.++|.+|+..++ ..++|++|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3568999999999999999999999999999999999889999999999999999999997665 599999999999876
Q ss_pred hHH
Q 006641 388 KEE 390 (637)
Q Consensus 388 ~~~ 390 (637)
-..
T Consensus 187 y~~ 189 (193)
T 2voo_A 187 YFA 189 (193)
T ss_dssp C--
T ss_pred HHH
Confidence 443
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=2.4e-14 Score=125.00 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=71.4
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
....++|||+|| ++|+++|+++|++||.|.+|++. +++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346788999996 69999999999999999999996 46899999999999999999999999999999999999
Q ss_pred cchHH
Q 006641 386 QRKEE 390 (637)
Q Consensus 386 ~~~~~ 390 (637)
+++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87643
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=3.7e-14 Score=116.18 Aligned_cols=74 Identities=20% Similarity=0.439 Sum_probs=68.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQV----A-------QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~----G-------~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
++.++++|||+|||+++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .||+
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 34568999999999999999999999999 8 9999999876 389999999999999999 9999
Q ss_pred CccCCcceeeee
Q 006641 92 MPINGKPIRIMY 103 (637)
Q Consensus 92 ~~i~g~~iri~~ 103 (637)
..|.|+.|+|..
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999864
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.5e-14 Score=122.78 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCC---CCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSK---RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t---~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
...+++|||+|||+++||++|+++|+.||+|. ++++.+..+ ++++|||||+|.+.++|++||+.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999998 888888887 6899999999999999999999984 36777777
Q ss_pred eeecc
Q 006641 101 IMYSH 105 (637)
Q Consensus 101 i~~s~ 105 (637)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66543
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=4.2e-14 Score=119.91 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=71.6
Q ss_pred ccccccccCC--CCCCC--------HHHHHHHHhhcCCeEEEEEeecCCC---CcccEEEEEeCCHHHHHHHHHHhCCce
Q 006641 308 KGANLYLKNL--DDSIN--------DEKLKELFSEFGTITSCKVMVDQHG---FSKGSGFAAFSMPEEATRALNEMNGKM 374 (637)
Q Consensus 308 ~~~~l~V~nL--~~~~t--------~e~L~~~F~~~G~i~~~~i~~d~~g---~~~g~afV~f~~~~~A~~A~~~~~g~~ 374 (637)
++++|.|+|+ +.++. +++|++.|++||.|++|+|+++..+ +++||+||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678899998 33443 3799999999999999999998643 689999999999999999999999999
Q ss_pred eCCEEEEEEEccchH
Q 006641 375 IGRKPLYVAVAQRKE 389 (637)
Q Consensus 375 ~~g~~l~V~~a~~~~ 389 (637)
++||.|+|.++....
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999998653
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-14 Score=119.05 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++|+.. ...+.|++|.|.++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4678999999999999999999999999999999875 689999999999999865322 3456999999999987
Q ss_pred hH
Q 006641 388 KE 389 (637)
Q Consensus 388 ~~ 389 (637)
+.
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 359
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=2.2e-14 Score=121.51 Aligned_cols=72 Identities=17% Similarity=0.399 Sum_probs=63.0
Q ss_pred ccCCCCCCCHHHHHHHH------------hhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 314 LKNLDDSINDEKLKELF------------SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 314 V~nL~~~~t~e~L~~~F------------~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
+.||++.+++++|+++| ++||.|++|+|+++.+++++|||||+|.+.++|.+|++.|||+.++||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566666666665555 999999999999998889999999999999999999999999999999999
Q ss_pred EEEc
Q 006641 382 VAVA 385 (637)
Q Consensus 382 V~~a 385 (637)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-14 Score=117.66 Aligned_cols=78 Identities=22% Similarity=0.360 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
..+++|||+|||++++|++|+++|+.||+|.+|++.++ ++|||||+|.+.++|++|+.. ...+.|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45789999999999999999999999999999999876 558999999999999865422 34558999999998
Q ss_pred cCCCc
Q 006641 105 HRDPS 109 (637)
Q Consensus 105 ~~~~~ 109 (637)
.....
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 361
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.2e-13 Score=117.07 Aligned_cols=83 Identities=8% Similarity=0.062 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCC-----CCcHHHHHHHHhccCCeEEEEEeeeCCC-CCcccEEEEEecChHHHHHHHHHcCCCccCCc
Q 006641 24 GYGNVSLYVGDLEQ-----NVNESQLYDLFSQVAQVVSVRVCRDQSK-RSSLGYAYVNYSNPQDAANAKEALNFMPINGK 97 (637)
Q Consensus 24 ~~~~~~L~V~nLp~-----~~te~~L~~~f~~~G~V~~i~v~~d~~t-~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~ 97 (637)
+.++++|+|+||-. +-++++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.||+..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999962 2378999999999999999999999754 68899999999999999999999999999999
Q ss_pred ceeeeeccC
Q 006641 98 PIRIMYSHR 106 (637)
Q Consensus 98 ~iri~~s~~ 106 (637)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.9e-14 Score=122.47 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=68.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-C---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-H---GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~---g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
..++|||+|||+++|+++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467899999999999999999999999999 8888774 3 7899999999999999999999984 3788888877
Q ss_pred Eccch
Q 006641 384 VAQRK 388 (637)
Q Consensus 384 ~a~~~ 388 (637)
.+...
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 65543
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=3.6e-14 Score=137.49 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=70.4
Q ss_pred ccccccccCCCCCC---------CHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---
Q 006641 308 KGANLYLKNLDDSI---------NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI--- 375 (637)
Q Consensus 308 ~~~~l~V~nL~~~~---------t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~--- 375 (637)
..++|||+||+..+ ++++|+++|++||.|++|+|+.+ ||||||+|.+.++|.+|+++|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 56789999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ---------CCEEEEEEEccchHHH
Q 006641 376 ---------GRKPLYVAVAQRKEER 391 (637)
Q Consensus 376 ---------~g~~l~V~~a~~~~~~ 391 (637)
.|+.|.|.||+.+...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 364
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.47 E-value=7.2e-14 Score=114.91 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=62.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc--cCCccee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP--INGKPIR 100 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~--i~g~~ir 100 (637)
...+..+|||+|||+++||++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++ +++.. ++|+.|+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4456789999999999999999999999999999999885 56999999999999984 34434 5689999
Q ss_pred eeeccCC
Q 006641 101 IMYSHRD 107 (637)
Q Consensus 101 i~~s~~~ 107 (637)
|.|+...
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9988654
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.2e-13 Score=119.40 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=71.7
Q ss_pred ccccccccCCC--CCC---CHHHHHHHHhhcCCeEEEEEeecCC-----CCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 006641 308 KGANLYLKNLD--DSI---NDEKLKELFSEFGTITSCKVMVDQH-----GFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377 (637)
Q Consensus 308 ~~~~l~V~nL~--~~~---t~e~L~~~F~~~G~i~~~~i~~d~~-----g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g 377 (637)
++++|+|+|+- .++ .+++|++.|++||.|++|+|+++.. ++++||+||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67889999983 223 3689999999999999999999853 5678999999999999999999999999999
Q ss_pred EEEEEEEccch
Q 006641 378 KPLYVAVAQRK 388 (637)
Q Consensus 378 ~~l~V~~a~~~ 388 (637)
|.|+|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999999753
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=1.5e-13 Score=130.40 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
.++|||+|||+++|+++|+++|+.||+|.+|+++++.. ++++|||||+|.+.++|++|++.++ ..|.|+.|+|.|...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 58999999999999999999999999999999999875 8899999999999999999997665 589999999999764
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=2e-13 Score=132.25 Aligned_cols=81 Identities=23% Similarity=0.426 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCC---------cHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc
Q 006641 23 SGYGNVSLYVGDLEQNV---------NESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~---------te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
....+++|||+||+.++ +|++|+++|++||+|.+|+|+++ +|||||+|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34578999999999998 79999999999999999999864 4899999999999999999999999
Q ss_pred c------------CCcceeeeeccCCCc
Q 006641 94 I------------NGKPIRIMYSHRDPS 109 (637)
Q Consensus 94 i------------~g~~iri~~s~~~~~ 109 (637)
| .|+.|+|.|+..++.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987764
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=116.46 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=69.3
Q ss_pred cccccccccCCCCCCC-----------HHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 006641 307 LKGANLYLKNLDDSIN-----------DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t-----------~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~ 375 (637)
.++++|+|+||-...+ +++|+++|++||.|++|.| .|. .++|||||+|.+.++|.+|+..|||+.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4577899999943332 5899999999999999966 553 3799999999999999999999999999
Q ss_pred CCEEEEEEEccchH
Q 006641 376 GRKPLYVAVAQRKE 389 (637)
Q Consensus 376 ~g~~l~V~~a~~~~ 389 (637)
+|++|+|.++.++.
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999998753
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.8e-12 Score=111.60 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 23 SGYGNVSLYVGDLEQNVN-----------ESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~t-----------e~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
.+.++++|+|.||....+ +++|+++|++||.|.+|.| .|+ .++|||||+|.+.++|++|++.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999944332 6899999999999999976 454 3679999999999999999999999
Q ss_pred CccCCcceeeeeccCCCcc
Q 006641 92 MPINGKPIRIMYSHRDPSI 110 (637)
Q Consensus 92 ~~i~g~~iri~~s~~~~~~ 110 (637)
..|.|++|+|.|+......
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999998765433
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=1.2e-12 Score=110.81 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHHHhccCCeEEEEEeeeCCC--CCcccEEEEEecChHHHHHHHHHcCCC
Q 006641 25 YGNVSLYVGDL--EQNVN--------ESQLYDLFSQVAQVVSVRVCRDQSK--RSSLGYAYVNYSNPQDAANAKEALNFM 92 (637)
Q Consensus 25 ~~~~~L~V~nL--p~~~t--------e~~L~~~f~~~G~V~~i~v~~d~~t--~~s~g~a~V~F~~~e~A~~Al~~ln~~ 92 (637)
.+++.|.|.|+ |.++. +++|++.|++||+|.+|+|+++..+ .+++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 44443 3689999999999999999999865 468899999999999999999999999
Q ss_pred ccCCcceeeeeccCC
Q 006641 93 PINGKPIRIMYSHRD 107 (637)
Q Consensus 93 ~i~g~~iri~~s~~~ 107 (637)
.+.||.|++.|+..+
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987543
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.6e-12 Score=112.22 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=71.9
Q ss_pred CCcEEEEcCCC--CCC---cHHHHHHHHhccCCeEEEEEeeeCC----CCCcccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 26 GNVSLYVGDLE--QNV---NESQLYDLFSQVAQVVSVRVCRDQS----KRSSLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 26 ~~~~L~V~nLp--~~~---te~~L~~~f~~~G~V~~i~v~~d~~----t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
++++|+|.|+- .++ -+++|++.|++||+|.+|+|+++.. +.+++|++||+|.+.++|.+|++.||+..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68999999993 222 3689999999999999999999975 45788999999999999999999999999999
Q ss_pred cceeeeeccC
Q 006641 97 KPIRIMYSHR 106 (637)
Q Consensus 97 ~~iri~~s~~ 106 (637)
|.|++.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=103.18 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=66.4
Q ss_pred CCcEEEEcCCC-------CCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 26 GNVSLYVGDLE-------QNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 26 ~~~~L~V~nLp-------~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
...+|.|.-.. ++++|++|+++|++||.|.+|+|++ +++|||||+|.+.++|++|++.++ .+.|++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEV--GLVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCC--BCSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcC--CCCCCe
Confidence 36688888765 4589999999999999999999983 567999999999999999998855 467999
Q ss_pred eeeeeccCCCcc
Q 006641 99 IRIMYSHRDPSI 110 (637)
Q Consensus 99 iri~~s~~~~~~ 110 (637)
|+|.|+...+..
T Consensus 82 l~V~~a~~~~~~ 93 (100)
T 2d9o_A 82 LKISWLEGQPQD 93 (100)
T ss_dssp CEEECSSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999998766543
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.32 E-value=6.7e-13 Score=112.29 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=64.7
Q ss_pred EcCCCCCCcHHHHHHHH------------hccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 32 VGDLEQNVNESQLYDLF------------SQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 32 V~nLp~~~te~~L~~~f------------~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
+.+|+..+++++|.++| ++||+|.+|+|+++.. ++++|||||+|.+.++|.+|++.||+..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 9999999999999875 6889999999999999999999999999999999
Q ss_pred eeeec
Q 006641 100 RIMYS 104 (637)
Q Consensus 100 ri~~s 104 (637)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=5e-12 Score=108.39 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=67.1
Q ss_pred ccccccccCCCCCC----------CHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 006641 308 KGANLYLKNLDDSI----------NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377 (637)
Q Consensus 308 ~~~~l~V~nL~~~~----------t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g 377 (637)
++++|.++|+=..- .+++|++.|++||.|++|.|.++. ++||+||+|.+.++|.+|++.|||+.++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46678888873211 236899999999999999997663 58999999999999999999999999999
Q ss_pred EEEEEEEccchH
Q 006641 378 KPLYVAVAQRKE 389 (637)
Q Consensus 378 ~~l~V~~a~~~~ 389 (637)
|.|+|.++....
T Consensus 83 R~i~v~~~~~~~ 94 (114)
T 3s6e_A 83 KMITAAYVPLPT 94 (114)
T ss_dssp EECEEEEECHHH
T ss_pred EEEEEEEEcHHH
Confidence 999999997554
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.6e-12 Score=105.35 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 319 ~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
.++|+++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +.|++|+|.|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 578999999999999999999998 46799999999999999999998654 68999999999865
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=6.4e-12 Score=128.39 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=66.7
Q ss_pred hcccccccccC--CCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCE--
Q 006641 306 KLKGANLYLKN--LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRK-- 378 (637)
Q Consensus 306 ~~~~~~l~V~n--L~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~---~g~-- 378 (637)
..++.+|||+| |+..+|+++|+++|++||+|++|.+.. +||||||+|.+.++|++|++.|||+.+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 34678899999 579999999999999999999987753 489999999999999999999999988 244
Q ss_pred EEEEEEcc
Q 006641 379 PLYVAVAQ 386 (637)
Q Consensus 379 ~l~V~~a~ 386 (637)
+|+|.+++
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 78998885
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=4.2e-11 Score=122.32 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcC--CCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC---C
Q 006641 22 PSGYGNVSLYVGD--LEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN---G 96 (637)
Q Consensus 22 ~~~~~~~~L~V~n--Lp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~---g 96 (637)
.++.++++|||+| |+..+||++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456788999999 578999999999999999999998754 3489999999999999999999998773 4
Q ss_pred c--ceeeeec
Q 006641 97 K--PIRIMYS 104 (637)
Q Consensus 97 ~--~iri~~s 104 (637)
+ ++++.|.
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 4 5666665
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.12 E-value=1.2e-10 Score=99.74 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCCCCCCc----------HHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc
Q 006641 24 GYGNVSLYVGDLEQNVN----------ESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~t----------e~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
+-+++.|.|.|+=..-. +++|++.|++||.|.+|+|+++. ++|++||+|.+.++|.+|++.||+..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34688999999832211 25789999999999999997764 46999999999999999999999999
Q ss_pred cCCcceeeeeccC
Q 006641 94 INGKPIRIMYSHR 106 (637)
Q Consensus 94 i~g~~iri~~s~~ 106 (637)
+.||.|++.|+..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999753
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.2e-10 Score=99.83 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=73.4
Q ss_pred hcccccccccCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCC-HHHHHHHHHHhC--CceeCCEEEE
Q 006641 306 KLKGANLYLKNLDDS-INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSM-PEEATRALNEMN--GKMIGRKPLY 381 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~-~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~-~~~A~~A~~~~~--g~~~~g~~l~ 381 (637)
-.+++.|||+||+++ +++++|+++|++||+|.+|.+.++. -+|||.|.+ .++|..|+..++ +..|.|..+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 457899999999999 9999999999999999999999884 369999999 899999999995 7889999999
Q ss_pred EEEccchHHHH
Q 006641 382 VAVAQRKEERK 392 (637)
Q Consensus 382 V~~a~~~~~~~ 392 (637)
+++....++..
T Consensus 90 ~evL~GeeE~~ 100 (121)
T 1owx_A 90 WEVLEGEVEKE 100 (121)
T ss_dssp EEECCHHHHHH
T ss_pred EEECCCHHHHH
Confidence 99998776654
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.2e-10 Score=91.70 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=62.8
Q ss_pred cccccccccCCC----CCCCH----HHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 006641 307 LKGANLYLKNLD----DSIND----EKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378 (637)
Q Consensus 307 ~~~~~l~V~nL~----~~~t~----e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~ 378 (637)
++..+|+|.-.+ .++-+ .+|.+.|++||+|..+++..|+ +||+|.+.++|.+|++ |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 455667777665 34444 6799999999999999999874 8999999999999997 999999999
Q ss_pred EEEEEEccch
Q 006641 379 PLYVAVAQRK 388 (637)
Q Consensus 379 ~l~V~~a~~~ 388 (637)
.|+|.++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999753
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.1e-09 Score=85.98 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCC----CCCcH----HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCcc
Q 006641 23 SGYGNVSLYVGDLE----QNVNE----SQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI 94 (637)
Q Consensus 23 ~~~~~~~L~V~nLp----~~~te----~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i 94 (637)
-++++.||+|.-++ .++-+ .+|.+.|++||.|..+|+..|+ +||+|.+.++|.+||+ ||+..+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 46678899999887 23433 6789999999999999999975 8999999999999997 999999
Q ss_pred CCcceeeeeccCC
Q 006641 95 NGKPIRIMYSHRD 107 (637)
Q Consensus 95 ~g~~iri~~s~~~ 107 (637)
.||.|+|.+..++
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 9999999987654
No 382
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=4.4e-09 Score=90.05 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecC-hHHHHHHHHHcC--CCccCCccee
Q 006641 25 YGNVSLYVGDLEQN-VNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSN-PQDAANAKEALN--FMPINGKPIR 100 (637)
Q Consensus 25 ~~~~~L~V~nLp~~-~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~-~e~A~~Al~~ln--~~~i~g~~ir 100 (637)
...+.|||+||+.+ +++++|+++|+.||+|..|.+.++.. .|||.|.+ .++|.+|++.|| +..|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45789999999999 99999999999999999999999887 59999999 899999999995 6788898877
Q ss_pred eeec
Q 006641 101 IMYS 104 (637)
Q Consensus 101 i~~s 104 (637)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7544
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.4e-09 Score=87.42 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=63.3
Q ss_pred hcccccccccCCCC-----CCCH----HHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 006641 306 KLKGANLYLKNLDD-----SIND----EKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376 (637)
Q Consensus 306 ~~~~~~l~V~nL~~-----~~t~----e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~ 376 (637)
.++..+|+|.-++. ++-+ .+|.+.|++||+|..+++..|+ +||+|.+.++|.+|++ |||..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45677888888763 2333 5799999999999999999884 9999999999999997 9999999
Q ss_pred CEEEEEEEccc
Q 006641 377 RKPLYVAVAQR 387 (637)
Q Consensus 377 g~~l~V~~a~~ 387 (637)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998653
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=2.8e-09 Score=103.40 Aligned_cols=71 Identities=17% Similarity=0.315 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeecC-----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 319 DSINDEKLKELFSEFGTITSCKVMVDQ-----HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 319 ~~~t~e~L~~~F~~~G~i~~~~i~~d~-----~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
.+..+++|++.|++||+|.+++|.++. +++++|++||+|.+.++|.+|++.|||+.++||.|.|.+....+
T Consensus 139 ~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 139 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp CTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 345678999999999999999998764 34899999999999999999999999999999999999998543
No 385
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=2.7e-09 Score=85.72 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=65.5
Q ss_pred CCCCCCCCcEEEEcCCCCC-----CcH----HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC
Q 006641 20 AVPSGYGNVSLYVGDLEQN-----VNE----SQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN 90 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~-----~te----~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln 90 (637)
...-++++.||+|.-++.+ +-+ .+|.+.|+.||.|..||+..|+ +||+|.+.++|.+||+ ||
T Consensus 8 i~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 8 SSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp SCCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG
T ss_pred ceecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC
Confidence 3456778999999999743 222 5689999999999999999985 9999999999999997 99
Q ss_pred CCccCCcceeeeec
Q 006641 91 FMPINGKPIRIMYS 104 (637)
Q Consensus 91 ~~~i~g~~iri~~s 104 (637)
+..|.||.|+|.+-
T Consensus 79 G~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 79 GMKVKGRAVKISGP 92 (95)
T ss_dssp GSEETTEEEEEECC
T ss_pred CeeeCCeEEEEecc
Confidence 99999999999764
No 386
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=5.6e-08 Score=94.16 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=61.6
Q ss_pred CcHHHHHHHHhccCCeEEEEEeeeCCC----CCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 39 VNESQLYDLFSQVAQVVSVRVCRDQSK----RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 39 ~te~~L~~~f~~~G~V~~i~v~~d~~t----~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
-.+++|++.|++||.|.+|+|+++..+ .+++|++||+|.+.++|.+|++.||+..+.||.|++.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 356889999999999999999977654 48899999999999999999999999999999999998754
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=9.3e-07 Score=72.24 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=66.1
Q ss_pred cccccccCCCCCCCHHHHHHHHhhc-----CCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEF-----GTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~-----G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
.++|-+-|||+.+++..|+.+.++| |.|+.+.+..|. +=|+|+|.|...|-||.-+|+|..|.||+|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5679999999999999999999999 999999999984 449999999999999999999999999999986
Q ss_pred E
Q 006641 384 V 384 (637)
Q Consensus 384 ~ 384 (637)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=7.7e-05 Score=60.61 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc----c-CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQ----V-AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~----~-G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
..++|.|.|||++++++.|.-+|+. - |+|.+|.... +-|+|.|.+.+.|++.|+. ....|.+.++.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3679999999999999999999965 2 4999988755 2599999999999999954 35578888888
Q ss_pred eeeccCCCccccCCCccEEEeCCCcccc
Q 006641 101 IMYSHRDPSIRKSGYGNVFIKNLDTSID 128 (637)
Q Consensus 101 i~~s~~~~~~~~~~~~~i~V~nLp~~it 128 (637)
|.-... ....++++.+|++.++
T Consensus 78 V~P~~~------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPP------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCC------CCCCCCCCCSCCCCCC
T ss_pred EEcCCC------CCcceEeeecCCCCCC
Confidence 864322 2334689999998764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=2.8e-05 Score=63.57 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=63.5
Q ss_pred cccccccCCCCCC-CH----HHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 309 GANLYLKNLDDSI-ND----EKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 309 ~~~l~V~nL~~~~-t~----e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
.++|+|.||+.++ +. +.++++|..|+++.+...++. -.-..|.|.++++|.+|...||+..+.|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 3569999998765 32 577999999999999888765 3357999999999999999999999999999999
Q ss_pred Eccc
Q 006641 384 VAQR 387 (637)
Q Consensus 384 ~a~~ 387 (637)
++++
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9983
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=5.4e-05 Score=61.89 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=63.8
Q ss_pred cEEEEcCCCCCC-cH----HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 28 VSLYVGDLEQNV-NE----SQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 28 ~~L~V~nLp~~~-te----~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.+|+|.||+.++ +. +.++++|..|+++.+....+.-+ =..|+|.+.++|.+|-..|++..|.|+.+||.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 489999999876 32 56789999999988887777654 37899999999999999999999999999999
Q ss_pred eccCC
Q 006641 103 YSHRD 107 (637)
Q Consensus 103 ~s~~~ 107 (637)
|.+..
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99844
No 391
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=6.9e-05 Score=61.30 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcc-----CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQV-----AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~-----G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
...++|-+-|||..++++.|+.+++.+ |.+..|.+..|.. =|+|+|.+..+|-+|.=.|++..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347899999999999999999999999 9999999988875 59999999999999998999999999999
Q ss_pred eee
Q 006641 100 RIM 102 (637)
Q Consensus 100 ri~ 102 (637)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.69 E-value=0.00011 Score=59.14 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCC--cccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS--SLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~--s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
.+|.|++||+.+||+++.+.++....+.....+..+.+.+ ...-|||+|.+.+++....+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4799999999999999999999999888888777665433 23569999999999999999999876643
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0012 Score=53.56 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCccEEEeCCCccccHHHHHhHhhc-----cCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEE
Q 006641 114 GYGNVFIKNLDTSIDNKALCDTFAA-----FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188 (637)
Q Consensus 114 ~~~~i~V~nLp~~it~~~L~~~F~~-----~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V 188 (637)
...+|.|.|||..++++.|.-.|+. =|.|.+++... +-|+|+|.+.+.|++.+++ ....+++..+.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 3457999999999999999999997 24788777641 5799999999999999984 366788888888
Q ss_pred eeeehhhhhhhccCCCccceEEecCCCccCC
Q 006641 189 GLFVRRQERAQQNVSPKFTNVYVNNLAETVT 219 (637)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 219 (637)
..+.++ ...++++.+|++.++
T Consensus 79 ~P~~~~----------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPR----------APARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCC----------CCCCCCCCSCCCCCC
T ss_pred EcCCCC----------CcceEeeecCCCCCC
Confidence 765443 346789999998775
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.17 E-value=0.0012 Score=52.85 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN 90 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln 90 (637)
-+..++| +.|+++...||.++|+.||.| .|+=+.|. -|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3567777 999999999999999999955 45545553 59999999999999998764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.06 E-value=0.00044 Score=55.90 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=53.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCC--cccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS--SLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~--s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
.+-+|.|+.|||.+||+++.+.++..-++.+...+..+.+.+ ...-|||+|.+.+|.....+.+++..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 467899999999999999988887665655554444433322 12459999999999999999999876643
No 396
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.89 E-value=0.0042 Score=49.86 Aligned_cols=66 Identities=11% Similarity=0.214 Sum_probs=55.6
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC--CC-CcccEEEEEeCCHHHHHHHHHHhCCcee
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ--HG-FSKGSGFAAFSMPEEATRALNEMNGKMI 375 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~--~g-~~~g~afV~f~~~~~A~~A~~~~~g~~~ 375 (637)
++|.|++||...|++++.+.++...++........+ .+ ..-..|+|.|.+.+++....+.++|+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 468999999999999999999999888777766553 11 1235699999999999999999999887
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0034 Score=52.79 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=56.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC-cceee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING-KPIRI 101 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g-~~iri 101 (637)
.....+.|.|-+.|++. -..|...|++||.|++...... ....+|.|.+..+|++|| ..|+..|.| .-|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEE
Confidence 34457899999999885 5677888999999998886211 148999999999999999 669888874 44444
Q ss_pred eec
Q 006641 102 MYS 104 (637)
Q Consensus 102 ~~s 104 (637)
.+.
T Consensus 92 ~p~ 94 (119)
T 1wwh_A 92 KPC 94 (119)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0017 Score=52.31 Aligned_cols=54 Identities=26% Similarity=0.384 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN 90 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln 90 (637)
..++| +.|+++...||.++|+.||.| .|+=+.|. -|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 56656663 59999999999999998775
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.40 E-value=0.017 Score=48.58 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-EEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR-KPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g-~~l~V~~a 385 (637)
...+.|.|-+.+... -..|..+|++||+|.+.... ....+-.|.|.+..+|++|+ ..||..++| -.|=|..-
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 345679999999874 67788899999999988762 12568999999999999999 679999985 66777765
Q ss_pred cchHHH
Q 006641 386 QRKEER 391 (637)
Q Consensus 386 ~~~~~~ 391 (637)
..+...
T Consensus 95 ~d~~vi 100 (119)
T 1wwh_A 95 IDKNVM 100 (119)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 555433
No 400
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.36 E-value=0.0042 Score=49.80 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=45.4
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMN 371 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~ 371 (637)
..++| ++|.+|.-.||.++|++||.| .|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 44667 999999999999999999944 47777663 49999999999999998763
No 401
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.97 E-value=0.0048 Score=49.64 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=46.0
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMN 371 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~ 371 (637)
..++| ++|.+|.-.||.++|++|| =..|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 35677 9999999999999999999 4457777763 49999999999999998764
No 402
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.97 E-value=0.0053 Score=64.72 Aligned_cols=56 Identities=11% Similarity=0.226 Sum_probs=44.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHH
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ 88 (637)
.+||+|. .|..+++.+|.++|++||+|.++..-+++. -||.|+|.+.+++..+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 6899998 799999999999999999999999887665 5999999999999977743
No 403
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.11 E-value=0.054 Score=43.65 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=49.4
Q ss_pred ccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC--C-CCceeEEEEEecCHHHHHHHHHHhcCCeeC
Q 006641 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS--N-GQSKGYGFVQFENEEAAQNAIKMLNGMLIN 182 (637)
Q Consensus 116 ~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~--~-g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 182 (637)
-+|.|+.||+.+|++++.+.++.+-.+.....+... . ...-.-|||.|.+.|+.....+..+|..+-
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 469999999999999999888876555433322211 1 112235999999999999999999987653
No 404
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.80 E-value=0.078 Score=45.13 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=56.2
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEE-EEEeecC-------------CC-CcccEEEEEeCCHHHHHHHHHHhCCce
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITS-CKVMVDQ-------------HG-FSKGSGFAAFSMPEEATRALNEMNGKM 374 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~-~~i~~d~-------------~g-~~~g~afV~f~~~~~A~~A~~~~~g~~ 374 (637)
..|.|-+.|.+. ...+-++|++||.|.+ ..+.++. .. ...+...|+|++..+|.+|+ ..||+.
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 357788887654 4556788999999876 2221100 00 12467799999999999999 889999
Q ss_pred eCCEEEEEEEccch
Q 006641 375 IGRKPLYVAVAQRK 388 (637)
Q Consensus 375 ~~g~~l~V~~a~~~ 388 (637)
|+|.-|-|...++.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888888643
No 405
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.30 E-value=0.21 Score=42.53 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=56.7
Q ss_pred CccEEEeCCCccccHHHHHhHhhccCceeEEE-EeEC------------C-CC-CceeEEEEEecCHHHHHHHHHHhcCC
Q 006641 115 YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK-VAID------------S-NG-QSKGYGFVQFENEEAAQNAIKMLNGM 179 (637)
Q Consensus 115 ~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~-v~~~------------~-~g-~skg~afV~F~~~e~A~~Ai~~lng~ 179 (637)
..-|.|-+.|++... .+.+.|+.||.|++-. +..+ + -. ....+-.|+|.+..+|.+|+.+ ||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 345788888777664 5678899999987621 1100 0 00 1245789999999999999986 999
Q ss_pred eeCCeeeEEeeeehhh
Q 006641 180 LINDKQVYVGLFVRRQ 195 (637)
Q Consensus 180 ~i~~~~l~V~~~~~~~ 195 (637)
.++|..|-|.++.+..
T Consensus 85 ii~G~mIGV~Py~~~~ 100 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKDA 100 (132)
T ss_dssp EETTEECEEEECCHHH
T ss_pred EeCcEEEEEEECCHHH
Confidence 9999999998876543
No 406
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.80 E-value=0.047 Score=57.54 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=41.4
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNE 369 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~ 369 (637)
+.|+|. .+..+++.+|.++|++||.|.++....+. .-|+.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 468997 79999999999999999999999877653 36999999999999977644
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.11 E-value=1.6 Score=46.77 Aligned_cols=56 Identities=25% Similarity=0.408 Sum_probs=46.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
+..++|+ .|+.+...+|.++|+.||.| +|+-+.|. .|||.|.+.++|..++.+++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 4577777 99999999999999999965 66544442 599999999999999988864
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.39 E-value=5.9 Score=42.37 Aligned_cols=53 Identities=30% Similarity=0.441 Sum_probs=43.7
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMN 371 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~ 371 (637)
.++|+ ++..|...+|.+.|+.||.| +|+++.| ..|||.|.+.+.|..+++.++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 45665 88899999999999999954 5666544 359999999999999998885
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=53.37 E-value=76 Score=24.50 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=62.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC-------ceeCCEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-------KMIGRKPL 380 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g-------~~~~g~~l 380 (637)
..|-|.|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++..-|++.+-+ ..+.|..+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 45668899999999999888888888877778776 35699999999999999988722 35688888
Q ss_pred EEEEccchHHHHH
Q 006641 381 YVAVAQRKEERKA 393 (637)
Q Consensus 381 ~V~~a~~~~~~~~ 393 (637)
.|--.-+.++.+.
T Consensus 84 dvistipedeekn 96 (129)
T 4eyt_A 84 DVISTIPEDEEKN 96 (129)
T ss_dssp EEECCCCHHHHHH
T ss_pred eeeecCCchhhhc
Confidence 8877766665543
No 410
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=39.69 E-value=78 Score=23.48 Aligned_cols=58 Identities=7% Similarity=0.200 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHh-ccC----CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 38 NVNESQLYDLFS-QVA----QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 38 ~~te~~L~~~f~-~~G----~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
.++..+|...+. ..| .|-.|.|..+ |.||+-. .+.|.++++.|+...++|+.++|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEEC-TTCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEEC-HHHHHHHHHHhccccCcCceEEEEEC
Confidence 356667777664 333 4666776433 7899865 55788999999999999999998754
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.49 E-value=1.3e+02 Score=23.20 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=45.4
Q ss_pred ccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhc
Q 006641 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177 (637)
Q Consensus 116 ~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 177 (637)
.-|.|-|+|...-..++--.....|--..|..+ .|.|.+.|.+.++.+.|+.+|-
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHH
Confidence 347788999999888888888888876667654 3579999999999999998763
No 412
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=34.27 E-value=23 Score=26.60 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhhcC-----CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 319 DSINDEKLKELFSEFG-----TITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 319 ~~~t~e~L~~~F~~~G-----~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
+.++..+|..++..-+ .|-.++|.. .|.||+-. .+.|.++++.|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEEC-TTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEEC-HHHHHHHHHHhccccCcCceEEEEECC
Confidence 4556667777776544 455666653 47899987 566888999999999999999998775
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.06 E-value=1.1e+02 Score=23.74 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=43.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc-cC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHc
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQ-VA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~-~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~l 89 (637)
.-|+-..+..++..++++.++. |+ .|.+|+.+.-.... --|||.+....+|......+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~---KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE---KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC---EEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc---eEEEEEcCCCCcHHHHHHhh
Confidence 4566677789999999988854 56 78888887754321 24999999998888766443
No 414
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=28.28 E-value=31 Score=23.74 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=18.7
Q ss_pred HHHHHhhCChHHHHHHHHHHH
Q 006641 594 TEVLHLIESPEALKTKVAEAM 614 (637)
Q Consensus 594 ~~~~~~~~~~~~l~~~~~~a~ 614 (637)
.-|++||.+.+.+-.++-||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 457899999999999999996
No 415
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=27.82 E-value=76 Score=18.65 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 006641 604 EALKTKVAEAMAVLQEAAAR 623 (637)
Q Consensus 604 ~~l~~~~~~a~~~~~~~~~~ 623 (637)
++|+.||+|--.+|++.+.+
T Consensus 9 ~lLKKKIEEQr~i~~~~~Hk 28 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKTHHK 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 57999999999999876643
No 416
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.54 E-value=1.1e+02 Score=27.09 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=37.4
Q ss_pred cEEEeCCCcc---------ccHHHHHhHh--hccCceeEEEEeECCCCCceeEEEEEecCHHH
Q 006641 117 NVFIKNLDTS---------IDNKALCDTF--AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEA 168 (637)
Q Consensus 117 ~i~V~nLp~~---------it~~~L~~~F--~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~ 168 (637)
.+.|-|+|.. .+.++|.+.| ..|.++ .++.+.++.| ..|++.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCChH
Confidence 4677888872 3567899977 999885 4667777766 67899999998543
No 417
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.32 E-value=89 Score=25.31 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=27.1
Q ss_pred CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 53 QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 53 ~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
.|.||.+..+- +||-||+=.+..+..+|++.+.+
T Consensus 40 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPEHV-----KGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECTTC-----CSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecCCC-----ceEEEEEeCCHHHHHHHHhcccc
Confidence 58888765543 38999999999999999976654
No 418
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.99 E-value=1.1e+02 Score=23.59 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=41.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHh-ccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHH
Q 006641 29 SLYVGDLEQNVNESQLYDLFS-QVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~-~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al 86 (637)
.-|+-..+.++|..++++.++ -|+ .|.+|+.+.-... .--|||.+....+|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~---~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG---EKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS---SEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCC---ceEEEEEECCCCcHHHHH
Confidence 356777788999999998885 456 8888888775531 124999999888876655
No 419
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=22.96 E-value=1.9e+02 Score=23.15 Aligned_cols=49 Identities=10% Similarity=0.286 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHH-hccC---CeEEEEEeee-CCCCCcccEEEEEecChHHHHHHH
Q 006641 37 QNVNESQLYDLF-SQVA---QVVSVRVCRD-QSKRSSLGYAYVNYSNPQDAANAK 86 (637)
Q Consensus 37 ~~~te~~L~~~f-~~~G---~V~~i~v~~d-~~t~~s~g~a~V~F~~~e~A~~Al 86 (637)
+..+..+|++.+ ..|+ .+.-|.=++. --.+++.|||.| |.|.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 557788888876 4555 2333333333 344678899988 78887776654
No 420
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.90 E-value=1.4e+02 Score=23.10 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=39.9
Q ss_pred cccccCCCCCCCHHHHHHHHhh-cC-CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHH
Q 006641 311 NLYLKNLDDSINDEKLKELFSE-FG-TITSCKVMVDQHGFSKGSGFAAFSMPEEATRAL 367 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~-~G-~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~ 367 (637)
+-|+-.++...+..++++.++. |+ .|.+|..+.-+.| .--|+|++..-.+|....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHH
Confidence 4566668889999999999987 55 6777777665433 334899998777666544
No 421
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=22.43 E-value=32 Score=23.15 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.4
Q ss_pred HHHHHhhCChHHHHHHHHHHH
Q 006641 594 TEVLHLIESPEALKTKVAEAM 614 (637)
Q Consensus 594 ~~~~~~~~~~~~l~~~~~~a~ 614 (637)
.-|+|||.+.+.+-.|+-||+
T Consensus 16 qal~hLiknD~~Fl~~iHeAY 36 (46)
T 2wx4_A 16 QAFTYLIQNDKEFANKLHKAY 36 (46)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 457799999999999999996
No 422
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.07 E-value=81 Score=34.73 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHh----hcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 316 NLDDSINDEKLKELFS----EFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 316 nL~~~~t~e~L~~~F~----~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
..+.+.+--||..+|- .+|.|+++.+..-+.-..+.++++.|.+.++|..++..+-...+ .+..+++-+..
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~--~psa~El~D~~ 424 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRC--APASIRLMDNQ 424 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTC--CCSEEEEECHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCC--CccccccccHH
Confidence 3444555557888883 68999999887665455677889999999999999987643212 23344554433
No 423
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.02 E-value=1.4e+02 Score=26.45 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=35.7
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHH--hccCCeEEEEEeeeCCCCCcccEEEEEecChHH
Q 006641 29 SLYVGDLEQ-N--------VNESQLYDLF--SQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81 (637)
Q Consensus 29 ~L~V~nLp~-~--------~te~~L~~~f--~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~ 81 (637)
.+.|-|+|. . .+..+|.+.| +.|.++ .|+.+-+.. -+.|+|.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~--Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYL--GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSS--BEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCC--CCceeEEEEecCChH
Confidence 456778876 2 3447899977 999987 566666654 356899999987633
Done!