Query 006642
Match_columns 637
No_of_seqs 168 out of 249
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 12:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04782 DUF632: Protein of un 100.0 9E-114 2E-118 899.8 33.8 301 243-543 1-312 (312)
2 PF04783 DUF630: Protein of un 100.0 1.4E-28 3E-33 198.5 8.0 59 1-59 1-59 (60)
3 KOG1924 RhoA GTPase effector D 97.8 0.031 6.7E-07 65.2 29.6 57 241-297 744-800 (1102)
4 cd07599 BAR_Rvs167p The Bin/Am 94.2 3.8 8.2E-05 41.4 17.7 163 448-626 16-196 (216)
5 KOG1924 RhoA GTPase effector D 94.1 0.17 3.6E-06 59.4 8.5 25 384-408 802-826 (1102)
6 cd07591 BAR_Rvs161p The Bin/Am 93.6 2.4 5.2E-05 43.6 15.1 60 447-526 24-83 (224)
7 cd07598 BAR_FAM92 The Bin/Amph 83.4 57 0.0012 33.4 16.9 160 447-632 10-203 (211)
8 PF03114 BAR: BAR domain; Int 76.6 46 0.00099 32.4 12.4 91 320-418 120-219 (229)
9 cd07307 BAR The Bin/Amphiphysi 73.2 77 0.0017 29.7 12.6 99 320-418 82-186 (194)
10 PF12355 Dscam_C: Down syndrom 63.2 9.1 0.0002 35.3 3.7 12 156-167 62-73 (124)
11 PF03114 BAR: BAR domain; Int 60.3 1.7E+02 0.0037 28.4 16.4 40 447-486 39-81 (229)
12 KOG3771 Amphiphysin [Intracell 59.2 3.3E+02 0.0071 31.3 15.7 165 448-630 44-223 (460)
13 KOG2675 Adenylate cyclase-asso 56.9 23 0.0005 39.9 6.1 25 36-60 183-207 (480)
14 cd07686 F-BAR_Fer The F-BAR (F 54.3 2.5E+02 0.0053 29.4 12.9 49 318-366 8-61 (234)
15 cd07651 F-BAR_PombeCdc15_like 52.9 85 0.0018 32.1 9.3 71 334-409 120-201 (236)
16 KOG2675 Adenylate cyclase-asso 52.7 9.1 0.0002 42.9 2.2 9 157-165 237-245 (480)
17 PF09325 Vps5: Vps5 C terminal 52.6 1.3E+02 0.0029 30.1 10.6 89 338-426 138-229 (236)
18 cd07673 F-BAR_FCHO2 The F-BAR 52.2 3.1E+02 0.0068 28.9 15.7 82 318-408 117-200 (269)
19 cd07596 BAR_SNX The Bin/Amphip 52.0 2.4E+02 0.0051 27.5 12.2 54 338-391 120-176 (218)
20 cd07588 BAR_Amphiphysin The Bi 50.3 3E+02 0.0065 28.2 13.1 83 448-546 26-109 (211)
21 smart00721 BAR BAR domain. 50.0 2.1E+02 0.0045 28.5 11.5 86 332-417 138-227 (239)
22 COG5085 Predicted membrane pro 48.9 22 0.00048 36.3 4.1 41 506-546 145-188 (230)
23 KOG4503 Uncharacterized conser 48.9 22 0.00048 36.3 4.1 41 506-546 145-188 (230)
24 PF02970 TBCA: Tubulin binding 48.2 1.3E+02 0.0028 26.7 8.4 50 343-392 22-80 (90)
25 KOG3470 Beta-tubulin folding c 47.6 2E+02 0.0044 26.6 9.5 74 317-401 12-95 (107)
26 PF06989 BAALC_N: BAALC N-term 47.5 8.2 0.00018 30.5 0.7 12 1-12 1-12 (53)
27 PF12709 Kinetocho_Slk19: Cent 46.3 1.4E+02 0.003 26.7 8.1 67 517-587 2-73 (87)
28 PF01213 CAP_N: Adenylate cycl 44.2 22 0.00047 38.6 3.5 25 36-60 179-203 (312)
29 cd07648 F-BAR_FCHO The F-BAR ( 42.4 2E+02 0.0043 29.9 10.2 67 337-408 125-193 (261)
30 PF12408 DUF3666: Ribose-5-pho 41.1 23 0.00051 28.2 2.3 28 242-269 5-32 (48)
31 smart00872 Alpha-mann_mid Alph 40.5 70 0.0015 27.2 5.4 52 364-420 7-58 (79)
32 PF13805 Pil1: Eisosome compon 38.1 5.4E+02 0.012 27.6 14.5 88 362-463 167-265 (271)
33 KOG1923 Rac1 GTPase effector F 37.0 1E+02 0.0022 37.2 7.6 22 608-629 714-735 (830)
34 KOG2008 BTK-associated SH3-dom 36.9 1.5E+02 0.0032 32.5 8.1 82 314-396 148-233 (426)
35 cd07659 BAR_PICK1 The Bin/Amph 35.2 1.7E+02 0.0038 30.2 8.0 63 334-396 105-169 (215)
36 cd07589 BAR_DNMBP The Bin/Amph 33.9 5E+02 0.011 26.0 14.9 32 599-630 146-177 (195)
37 cd07590 BAR_Bin3 The Bin/Amphi 33.3 5.7E+02 0.012 26.5 18.2 38 507-544 64-111 (225)
38 PF08655 DASH_Ask1: DASH compl 33.2 93 0.002 26.4 4.8 49 370-418 2-56 (66)
39 cd07675 F-BAR_FNBP1L The F-BAR 33.2 6.1E+02 0.013 26.8 16.0 33 599-631 192-229 (252)
40 smart00509 TFS2N Domain in the 32.7 88 0.0019 26.7 4.8 55 362-418 18-74 (75)
41 cd03568 VHS_STAM VHS domain fa 32.5 2.7E+02 0.0058 26.7 8.6 94 381-484 37-130 (144)
42 PRK09752 adhesin; Provisional 32.2 41 0.00089 42.4 3.6 14 262-275 1172-1185(1250)
43 PF10168 Nup88: Nuclear pore c 31.8 1E+03 0.022 29.1 14.9 78 316-393 534-619 (717)
44 PLN03132 NADH dehydrogenase (u 31.6 28 0.00061 39.7 2.0 19 156-174 17-35 (461)
45 cd07659 BAR_PICK1 The Bin/Amph 31.5 4.2E+02 0.0091 27.5 10.0 104 384-487 2-121 (215)
46 COG1579 Zn-ribbon protein, pos 30.9 2E+02 0.0042 30.3 7.8 77 318-395 4-80 (239)
47 cd07675 F-BAR_FNBP1L The F-BAR 30.3 5.1E+02 0.011 27.4 10.9 93 336-428 128-241 (252)
48 KOG1830 Wiskott Aldrich syndro 30.2 1.3E+02 0.0029 34.0 6.7 21 250-270 471-494 (518)
49 PF10104 Brr6_like_C_C: Di-sul 29.6 1.4E+02 0.0031 28.4 6.1 40 507-546 65-107 (135)
50 cd07593 BAR_MUG137_fungi The B 28.7 6.6E+02 0.014 25.9 15.9 88 449-545 8-111 (215)
51 PF09241 Herp-Cyclin: Herpesvi 28.2 33 0.00071 30.3 1.4 14 395-408 18-31 (106)
52 PRK11546 zraP zinc resistance 26.9 1.3E+02 0.0029 29.1 5.4 51 338-395 53-103 (143)
53 KOG1923 Rac1 GTPase effector F 26.3 86 0.0019 37.8 4.7 13 13-25 172-184 (830)
54 cd07647 F-BAR_PSTPIP The F-BAR 25.6 7.4E+02 0.016 25.4 11.8 70 317-386 84-172 (239)
55 cd07636 BAR_GRAF The Bin/Amphi 25.5 7.5E+02 0.016 25.4 12.3 41 447-487 15-55 (207)
56 cd07612 BAR_Bin2 The Bin/Amphi 25.5 7.6E+02 0.017 25.5 16.9 156 448-630 26-205 (211)
57 cd07633 BAR_OPHN1 The Bin/Amph 25.1 7E+02 0.015 25.8 10.3 40 448-487 16-55 (207)
58 COG5178 PRP8 U5 snRNP spliceos 25.1 53 0.0011 41.3 2.8 28 459-486 658-685 (2365)
59 PF10168 Nup88: Nuclear pore c 25.0 3.8E+02 0.0082 32.5 9.8 26 528-553 558-583 (717)
60 cd07596 BAR_SNX The Bin/Amphip 24.9 6.4E+02 0.014 24.4 16.8 37 446-482 9-45 (218)
61 cd07685 F-BAR_Fes The F-BAR (F 24.7 5.8E+02 0.012 26.9 9.8 77 338-418 134-226 (237)
62 cd07676 F-BAR_FBP17 The F-BAR 24.1 4.6E+02 0.01 27.5 9.3 94 316-409 98-215 (253)
63 PF11802 CENP-K: Centromere-as 23.6 9.3E+02 0.02 25.8 13.3 19 404-422 20-38 (268)
64 PF12325 TMF_TATA_bd: TATA ele 23.0 4.8E+02 0.01 24.5 8.1 81 316-396 21-104 (120)
65 cd07641 BAR_ASAP1 The Bin/Amph 22.3 9E+02 0.019 25.2 13.8 70 456-549 24-95 (215)
66 PF06456 Arfaptin: Arfaptin-li 22.0 7.2E+02 0.016 25.8 10.1 78 333-417 135-226 (229)
67 KOG4411 Phytoene/squalene synt 22.0 1.3E+02 0.0027 31.7 4.4 49 514-562 68-126 (292)
68 PF09325 Vps5: Vps5 C terminal 21.2 8.3E+02 0.018 24.3 16.3 39 446-484 29-67 (236)
69 PF15195 TMEM210: TMEM210 fami 21.1 55 0.0012 29.7 1.4 13 39-51 15-27 (116)
70 PF08581 Tup_N: Tup N-terminal 20.8 2E+02 0.0044 25.1 4.9 42 317-358 35-77 (79)
No 1
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=100.00 E-value=9e-114 Score=899.79 Aligned_cols=301 Identities=46% Similarity=0.803 Sum_probs=291.2
Q ss_pred CHHHHHHHHHHHHHHhhccchhhhhhhhcCCCccCCccccccc---cccccccccCCCcccc------ccCCCCcccccc
Q 006642 243 GVSEVLKEVQVLFEKASESGNDVLKMFDAGKFRYHHKYYSLSQ---VSSKMFKAVAPSKPLR------YQRLDDDDVLNS 313 (637)
Q Consensus 243 ~l~ev~keI~~~F~kAs~sg~eVs~mLEa~k~~~~~~~~~~~~---~ssk~l~~~sps~~~~------~~~~~~~~~~~~ 313 (637)
||++||||||++|+|||+||+|||+||||||++||+++..... +|++|+++++|+++.. ..+++++.+|++
T Consensus 1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~~~~~~~~~~s~~~~~~~~w~~s~~s~~~~~~~~~~~~~~~~~ 80 (312)
T PF04782_consen 1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNFSDLKGKVDHSSRVLSPISWSRSSSSRISNSDSDFDEEECMGS 80 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcccccccccccchhhhccccccCCCCCCcccccccCcCcccCccc
Confidence 7999999999999999999999999999999999999865543 7999999999987654 356777789999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006642 314 RNLTASLRKLCMWERKLYDEVKAEEKLRILYARKYKQMKSLDDKGAET--LEAARTMLRALSTKIQIAFHVIDKMSISMN 391 (637)
Q Consensus 314 gshssTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~~g~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~ 391 (637)
|+||+|||||||||||||+|||++|+||++|||||++||+||+||+|+ |||||++|++|+|||+|+||+||+||++|+
T Consensus 81 gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~ 160 (312)
T PF04782_consen 81 GSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIE 160 (312)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006642 392 KLRDEELWPQINDLVHRLLIMWKAMLECHRRQSHIIMEAKSLDAIASNAKLENHHLEAAIKLKFELQNWYLNFSDWNEAQ 471 (637)
Q Consensus 392 kLRDeEL~PQL~eLi~GL~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~se~h~~at~qLe~el~~W~~sF~~wI~aQ 471 (637)
|||||||||||+|||+||++|||+|+||||+|++||+++++|+++.++++++++||+||+|||.||++|++||++||++|
T Consensus 161 kLRDeEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~sF~~~i~~Q 240 (312)
T PF04782_consen 161 KLRDEELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSSFCKWIKAQ 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHH
Q 006642 472 KGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHHWLQAMGMLPEKEVAEALQSFCSSINQL 543 (637)
Q Consensus 472 k~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~W~~ald~lp~k~v~~aIk~f~~~v~~i 543 (637)
|+||+||||||++||.++|+++++|++|+||+|.++||||+||++|+++||+||+++|++|||+|+++||+|
T Consensus 241 k~YV~aLn~WL~~~l~~~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~~i 312 (312)
T PF04782_consen 241 KSYVKALNGWLKLCLMQEPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVHHI 312 (312)
T ss_pred HHHHHHHHHHHHHhccccccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976
No 2
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=99.95 E-value=1.4e-28 Score=198.46 Aligned_cols=59 Identities=51% Similarity=0.852 Sum_probs=58.5
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhc
Q 006642 1 MGCSTSKLDNLPAVALCRDRCRFLEEALRHSYALADAHVAYMQSLKTLGPTLHQFFDHF 59 (637)
Q Consensus 1 MGC~~SKld~~eaV~lCreRk~~lk~av~~R~~LAaaH~aY~qSLr~vG~ALr~F~e~e 59 (637)
|||++||+|++|||++|||||+|||+||++||+||+||++|++|||+||+||++|+++|
T Consensus 1 MGC~~SK~d~eeaV~~CkeRkr~~k~Av~~R~~lAaaH~aY~~SLr~~g~aL~~F~~~e 59 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLCKERKRLMKQAVDARYALAAAHAAYIQSLRNVGAALRQFAEGE 59 (60)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999987
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.77 E-value=0.031 Score=65.19 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHhhccchhhhhhhhcCCCccCCccccccccccccccccCCC
Q 006642 241 QPGVSEVLKEVQVLFEKASESGNDVLKMFDAGKFRYHHKYYSLSQVSSKMFKAVAPS 297 (637)
Q Consensus 241 ~r~l~ev~keI~~~F~kAs~sg~eVs~mLEa~k~~~~~~~~~~~~~ssk~l~~~sps 297 (637)
....+.-+.+|+..|.--++.-.=|.+|+++.+++.+-..--|+-.++-+++.|-|.
T Consensus 744 e~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~ 800 (1102)
T KOG1924|consen 744 EQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPD 800 (1102)
T ss_pred CHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChH
Confidence 457778888999999999999999999999988877643222233345555555554
No 4
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=94.20 E-value=3.8 Score=41.44 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHccCChH
Q 006642 448 EAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHHWLQAMGMLPEK 527 (637)
Q Consensus 448 ~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~W~~ald~lp~k 527 (637)
..+..|-.++..|..+.....++|..+++++.+=.. |...........| ..+.....|.+|...++.|-.
T Consensus 16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~------p~~~~~~~~~~~~---~~~~~~~~~~~y~~~~~~l~~- 85 (216)
T cd07599 16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD------PIVGPKESVGSHP---APESTLARLSRYVKALEELKK- 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcCCCCcCcCCCC---CcHHHHHHHHHHHHHHHHHHH-
Confidence 467788999999999999999999999998887543 3222211111111 134567888999999888843
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHhHHHHHhhhhcccchHHHHHHHHH-HHH------HHHHHHHHHHHhhhhh
Q 006642 528 EVAEALQSF-----------CSSINQLLEQHHVELQQMAMGRRDVDRKLKILER-EEK------KMQKAMQEREKKMTSL 589 (637)
Q Consensus 528 ~v~~aIk~f-----------~~~v~~i~~qQ~eE~~qk~~~~kelekk~~~le~-~~~------~~~~~~~~~~kk~~~~ 589 (637)
.+..-+..| ...+..+-..= +.|....-|+++-...+++ ... +-+.++...++++...
T Consensus 86 ~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~I----kKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a 161 (216)
T cd07599 86 ELLEELEFFEERVILPAKELKKYIKKIRKTI----KKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEA 161 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH
Confidence 333333333 22222221110 0110111123333222332 110 1111222222222211
Q ss_pred hhhhhccccccccccCcHHHHHHHHHHHHHHHHHHHH
Q 006642 590 AREWNKITSTGSLHSGLKQSFMAIERFAANSEQAYDE 626 (637)
Q Consensus 590 ~~~~~~~t~l~~Lq~~L~~vF~aL~~Fs~~s~~~ye~ 626 (637)
...=... .+.|+.-||.+|.....|-..++.+|=-
T Consensus 162 ~~~y~~l--N~~Lk~eLP~l~~~~~~~~~~~~~~~~~ 196 (216)
T cd07599 162 KEEYEAL--NELLKSELPKLLALADEFLPPLFKSFYY 196 (216)
T ss_pred HHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 4668999999999999999998887543
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.12 E-value=0.17 Score=59.43 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHhhhhcccccchhhHHHHHHHH
Q 006642 384 DKMSISMNKLRDEELWPQINDLVHR 408 (637)
Q Consensus 384 dsis~~I~kLRDeEL~PQL~eLi~G 408 (637)
-+++..-+.||-.|=|-.|+|||--
T Consensus 802 ~avt~ACEE~rkSesFs~lLeLvLl 826 (1102)
T KOG1924|consen 802 VAVTAACEELRKSESFSKLLELVLL 826 (1102)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444455566777777777777643
No 6
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=93.62 E-value=2.4 Score=43.58 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHccCCh
Q 006642 447 LEAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHHWLQAMGMLPE 526 (637)
Q Consensus 447 ~~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~W~~ald~lp~ 526 (637)
-..+..|..++..|..++..+.++|....++|.+ .+.|+... ....+|..|...++.|.+
T Consensus 24 e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~------lY~p~~~~--------------~~~~~~~~y~~~v~~l~~ 83 (224)
T cd07591 24 EKASTKLQKEAKGYLDSLRALTSSQARIAETISS------FYGDAGDK--------------DGAMLSQEYKQAVEELDA 83 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCCCc--------------cHhHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999886 34554322 114688888888877643
No 7
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.36 E-value=57 Score=33.39 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHccCC-
Q 006642 447 LEAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHHWLQAMGMLP- 525 (637)
Q Consensus 447 ~~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~W~~ald~lp- 525 (637)
.+..-.||.-|...|+.|..++...+.+-.++-.--+-|..+-..| .|.+-.-...|...+.++.
T Consensus 10 ~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E--------------~~~L~~~L~~lae~~~~i~d 75 (211)
T cd07598 10 QERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE--------------NPSLKQGLKNFAECLAALQD 75 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--------------CHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999999888777765544323 4566666677777777776
Q ss_pred ---------hHHHHHHHHHHHHHHHHH-------HHHhHHHHHhhhhcc--c-----------chHHHH----HHHHHHH
Q 006642 526 ---------EKEVAEALQSFCSSINQL-------LEQHHVELQQMAMGR--R-----------DVDRKL----KILEREE 572 (637)
Q Consensus 526 ---------~k~v~~aIk~f~~~v~~i-------~~qQ~eE~~qk~~~~--k-----------elekk~----~~le~~~ 572 (637)
...|++-|+.|...+.+. ...|..+.+++.+.. | +-|.++ ..+++.-
T Consensus 76 ~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s 155 (211)
T cd07598 76 YRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRST 155 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666655443 223444444332211 0 011111 0111111
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006642 573 KKMQKAMQEREKKMTSLAREWNKITSTGSLHSGLKQSFMAIERFAANSEQAYDELHLRIE 632 (637)
Q Consensus 573 ~~~~~~~~~~~kk~~~~~~~~~~~t~l~~Lq~~L~~vF~aL~~Fs~~s~~~ye~l~~~~e 632 (637)
..|..+|+.+++. -+.-|+..|..+...+..|....++.|..+++.+.
T Consensus 156 ~~l~ee~~rFe~~------------k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~ 203 (211)
T cd07598 156 KELEEQMDNFEKQ------------KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQ 203 (211)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122233333321 14568888999999999999999999988888664
No 8
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=76.60 E-value=46 Score=32.43 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHhhhhhcCc----ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006642 320 LRKLCMWERKLYDE----VKAEEKLRILYARKYKQMKSLDDKGA----ET-LEAARTMLRALSTKIQIAFHVIDKMSISM 390 (637)
Q Consensus 320 LdkLyaWEKKLY~E----VKa~E~~r~~yekK~~~Lr~~d~~g~----~~-idkTra~vk~L~tri~Vaiq~vdsis~~I 390 (637)
++.|--+= +.+.+ +|.-+..+++||+-...+.++..++. +. ++.++..-..+...+...+.. |
T Consensus 120 i~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~-------l 191 (229)
T PF03114_consen 120 IDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPK-------L 191 (229)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 34444444 44444 44778889999999999988876554 33 777777777777777766554 4
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHH
Q 006642 391 NKLRDEELWPQINDLVHRLLIMWKAMLE 418 (637)
Q Consensus 391 ~kLRDeEL~PQL~eLi~GL~~MWk~M~e 418 (637)
...|.+-|-++|..+|.......+.+++
T Consensus 192 ~~~~~~~l~~~l~~~i~~q~~~~~~~~~ 219 (229)
T PF03114_consen 192 FAKRQDILEPCLQSFIEAQLQYFQQLYQ 219 (229)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777779999999987777666654
No 9
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=73.22 E-value=77 Score=29.67 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhhhhhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006642 320 LRKLCMWERKLYDEVK----AEEKLRILYARKYKQMKSLDDKGAET--LEAARTMLRALSTKIQIAFHVIDKMSISMNKL 393 (637)
Q Consensus 320 LdkLyaWEKKLY~EVK----a~E~~r~~yekK~~~Lr~~d~~g~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~kL 393 (637)
++-|-.|-++.+..|+ .-+..|..||.....+.++..++.+. +..+...+.....+..-.-.-+-..-..+..-
T Consensus 82 ~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~ 161 (194)
T cd07307 82 IEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEK 161 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 006642 394 RDEELWPQINDLVHRLLIMWKAMLE 418 (637)
Q Consensus 394 RDeEL~PQL~eLi~GL~~MWk~M~e 418 (637)
|-.++-+.|..+++.....|+.+++
T Consensus 162 ~~~~~~~~L~~~~~~q~~~~~~~~~ 186 (194)
T cd07307 162 RKELFLSLLLSFIEAQSEFFKEVLK 186 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH
No 10
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=63.21 E-value=9.1 Score=35.29 Aligned_cols=12 Identities=42% Similarity=1.076 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 006642 156 NKTPPPPTPSSS 167 (637)
Q Consensus 156 ~ppPPPppp~~s 167 (637)
.|-||||||+.-
T Consensus 62 SPePPpPPPRn~ 73 (124)
T PF12355_consen 62 SPEPPPPPPRNH 73 (124)
T ss_pred CCCCCCcCCCCC
Confidence 355666777764
No 11
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=60.26 E-value=1.7e+02 Score=28.39 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHhhc
Q 006642 447 LEAAIKLKFELQNWYLNFSDWNEAQK---GYVKALNGWLLKCL 486 (637)
Q Consensus 447 ~~at~qLe~el~~W~~sF~~wI~aQk---~YV~aLngWL~~cl 486 (637)
...+..|...+..|..++.++..++. +-.+.|..+|....
T Consensus 39 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 81 (229)
T PF03114_consen 39 EESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELG 81 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHh
Confidence 45667777777888888888888877 44445666665543
No 12
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.17 E-value=3.3e+02 Score=31.30 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHccCChH
Q 006642 448 EAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHHWLQAMGMLPEK 527 (637)
Q Consensus 448 ~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~W~~ald~lp~k 527 (637)
..+..|..++.+|..+.+..+.+|+..-+.|.. .|+| .=+++...--|+.+|+.--.-++..=.+
T Consensus 44 ~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~e------iy~p---------~~~g~~~l~~v~~~~d~l~~d~~~~l~d 108 (460)
T KOG3771|consen 44 AEGKRLQKDLKNYLDAVRAMLAASKKLAESLQE------IYEP---------DWPGRDYLQAVADNDDLLWKDLDQKLVD 108 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCc---------ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888876665432 2333 2234444556788887655555544566
Q ss_pred HHHHHHHHHHHHHHHHHHHhH---HH----HHhh-------hhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhh
Q 006642 528 EVAEALQSFCSSINQLLEQHH---VE----LQQM-------AMGRRDVDRKLKILEREEKKMQKAMQEREKKMTS-LARE 592 (637)
Q Consensus 528 ~v~~aIk~f~~~v~~i~~qQ~---eE----~~qk-------~~~~kelekk~~~le~~~~~~~~~~~~~~kk~~~-~~~~ 592 (637)
-|+.-|+.|+..+-.|-..=. .. .++| .+.+|+ ++|+..-|.+..+.+...+.++..+.- +..-
T Consensus 109 ~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd-~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L 187 (460)
T KOG3771|consen 109 QVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKD-EAKLAKAEEELEKAQQVFEELNNELLEELPAL 187 (460)
T ss_pred hhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888876655532211 10 0000 000111 111111111111222233444433310 0000
Q ss_pred hhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 593 WNKITSTGSLHSGLKQSFMAIERFAANSEQAYDELHLR 630 (637)
Q Consensus 593 ~~~~t~l~~Lq~~L~~vF~aL~~Fs~~s~~~ye~l~~~ 630 (637)
. .. -+..+...|..||..=..|-.+..+.|..|...
T Consensus 188 ~-~s-Rv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v 223 (460)
T KOG3771|consen 188 Y-SS-RVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDV 223 (460)
T ss_pred H-Hh-hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 156677777777777788888888888887653
No 13
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=56.93 E-value=23 Score=39.90 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhcc
Q 006642 36 DAHVAYMQSLKTLGPTLHQFFDHFS 60 (637)
Q Consensus 36 aaH~aY~qSLr~vG~ALr~F~e~e~ 60 (637)
+-|+.++.|+.++=.-|+-|+-.+.
T Consensus 183 ~~hveWvKa~l~l~~eL~~YVk~hh 207 (480)
T KOG2675|consen 183 PRHVEWVKAYLALFLELQAYVKEHH 207 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999998874
No 14
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=54.35 E-value=2.5e+02 Score=29.41 Aligned_cols=49 Identities=29% Similarity=0.332 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhhhhhcCcch-HHHHH
Q 006642 318 ASLRKLCMWERKLYDEVKAE----EKLRILYARKYKQMKSLDDKGAET-LEAAR 366 (637)
Q Consensus 318 sTLdkLyaWEKKLY~EVKa~----E~~r~~yekK~~~Lr~~d~~g~~~-idkTr 366 (637)
..|.||-.||-+|-+-|+.- =++-.+|-++...|-++..++... ++-+.
T Consensus 8 e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~~~~~~s 61 (234)
T cd07686 8 EALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTSQLDYVS 61 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchh
Confidence 78999999999999998844 345568888888888887666544 55444
No 15
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=52.93 E-value=85 Score=32.13 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=42.2
Q ss_pred HhhhHHHHHHHHHHHHHHhhhhhcCc-----ch------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHH
Q 006642 334 VKAEEKLRILYARKYKQMKSLDDKGA-----ET------LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQI 402 (637)
Q Consensus 334 VKa~E~~r~~yekK~~~Lr~~d~~g~-----~~------idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL 402 (637)
+++-++.|..|++.|..++.+...+. +. ++|++..|......+.++++....+-.. =++-+|.+
T Consensus 120 ~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~-----~~~~~~~~ 194 (236)
T cd07651 120 EKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEI-----WNREWKAA 194 (236)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 34667889999999988876654321 11 5555555555566677766655544331 23444666
Q ss_pred HHHHHHH
Q 006642 403 NDLVHRL 409 (637)
Q Consensus 403 ~eLi~GL 409 (637)
.+.+|-|
T Consensus 195 ~~~~Q~l 201 (236)
T cd07651 195 LDDFQDL 201 (236)
T ss_pred HHHHHHH
Confidence 5555543
No 16
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=52.67 E-value=9.1 Score=42.95 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 006642 157 KTPPPPTPS 165 (637)
Q Consensus 157 ppPPPppp~ 165 (637)
|||||+||.
T Consensus 237 PPPPP~PPp 245 (480)
T KOG2675|consen 237 PPPPPAPPP 245 (480)
T ss_pred CCCCCCCCC
Confidence 344443444
No 17
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.60 E-value=1.3e+02 Score=30.08 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHH
Q 006642 338 EKLRILYARKYKQMKSLDDKGAET---LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVHRLLIMWK 414 (637)
Q Consensus 338 E~~r~~yekK~~~Lr~~d~~g~~~---idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk 414 (637)
+.+...++||-..+.++...|... ++.....|..+..++..+-+..+.|+..|.+=.+.==.=...++-..|..+..
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888887777764332 99999999999999999999999998876431111011123344445555555
Q ss_pred HHHHHHHHHHHH
Q 006642 415 AMLECHRRQSHI 426 (637)
Q Consensus 415 ~M~ecHq~Q~~i 426 (637)
.+.++|+....+
T Consensus 218 ~~i~~~~~~~~~ 229 (236)
T PF09325_consen 218 SQIEYQKKMLEA 229 (236)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 18
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=52.16 E-value=3.1e+02 Score=28.95 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 006642 318 ASLRKLCMWERKLYDEVKAEEKLRILYARKYKQMKSLDDKGAET--LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRD 395 (637)
Q Consensus 318 sTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~~g~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRD 395 (637)
.+++.+..| .+++ ++-++.|..|+..|+..-++-.-|+.. |||++.-+++-...+..+++..+.+-. +=
T Consensus 117 ~~~~~~~~~-~~~~---~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-----~~ 187 (269)
T cd07673 117 GTLEAVQNI-QSIT---QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKA-----DF 187 (269)
T ss_pred hHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 566777767 4444 455677899999998765554444433 898888888877777777666664422 22
Q ss_pred cchhhHHHHHHHH
Q 006642 396 EELWPQINDLVHR 408 (637)
Q Consensus 396 eEL~PQL~eLi~G 408 (637)
++-+|+..+-+|-
T Consensus 188 ~~~m~~~~~~~Q~ 200 (269)
T cd07673 188 EQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666665554
No 19
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.99 E-value=2.4e+02 Score=27.52 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCc-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006642 338 EKLRILYARKYKQMKSLDDKGA-ET--LEAARTMLRALSTKIQIAFHVIDKMSISMN 391 (637)
Q Consensus 338 E~~r~~yekK~~~Lr~~d~~g~-~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~ 391 (637)
+.+.....+|-.+|.++...+. .. |++++..|..++..+..+..-.+.|+..|.
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777766554 33 999999999999999999888888887764
No 20
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=50.33 E-value=3e+02 Score=28.24 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHH-HHHHHccCCh
Q 006642 448 EAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHH-WLQAMGMLPE 526 (637)
Q Consensus 448 ~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~-W~~ald~lp~ 526 (637)
..+..|-.++.....+.....++|+..-++|+. .|+|+- .++..--.|+..+.. |.+--+.| .
T Consensus 26 ~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~------lY~p~~---------~~~~~~~~v~e~~d~~~~~l~~~l-~ 89 (211)
T cd07588 26 ASANRLQKDLKNYLNSVRAMKQASKTLSETLKE------LYEPDW---------PGREHLASIFEQLDLLWNDLEEKL-S 89 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCcc---------ccHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 456677777788888888888888888888752 234422 112111223444433 44433333 7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006642 527 KEVAEALQSFCSSINQLLEQ 546 (637)
Q Consensus 527 k~v~~aIk~f~~~v~~i~~q 546 (637)
+.|++-|+.|.+.+..|-..
T Consensus 90 ~~Vl~Pl~~~~s~f~~i~k~ 109 (211)
T cd07588 90 DQVLGPLTAYQSQFPEVKKR 109 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888877554
No 21
>smart00721 BAR BAR domain.
Probab=50.04 E-value=2.1e+02 Score=28.53 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=46.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhhhhcCcc---h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHH
Q 006642 332 DEVKAEEKLRILYARKYKQMKSLDDKGAE---T-LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVH 407 (637)
Q Consensus 332 ~EVKa~E~~r~~yekK~~~Lr~~d~~g~~---~-idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~ 407 (637)
+.+|--+..|+.||.....|.++..++.. . +.+++..++....++.-.-.-+-.---.+...|.+.+.|+|..|+.
T Consensus 138 ~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~ 217 (239)
T smart00721 138 KARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIE 217 (239)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 34557888999999998888766444321 1 3333333333333333222222222233444556667888888887
Q ss_pred HHHHHHHHHH
Q 006642 408 RLLIMWKAML 417 (637)
Q Consensus 408 GL~~MWk~M~ 417 (637)
.-..-.+.++
T Consensus 218 aq~~y~~~~~ 227 (239)
T smart00721 218 AQLNFHRESY 227 (239)
T ss_pred HHHHHHHHHH
Confidence 7655444433
No 22
>COG5085 Predicted membrane protein [Function unknown]
Probab=48.94 E-value=22 Score=36.35 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHccCChHHH---HHHHHHHHHHHHHHHHH
Q 006642 506 GAPAVFVISHHWLQAMGMLPEKEV---AEALQSFCSSINQLLEQ 546 (637)
Q Consensus 506 ~aPpIf~lC~~W~~ald~lp~k~v---~~aIk~f~~~v~~i~~q 546 (637)
+-|.|+.+|+.|.+.|++-.--.| .-+-+.|+.+|..++.+
T Consensus 145 rvPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~~ 188 (230)
T COG5085 145 RVPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIRK 188 (230)
T ss_pred CCccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 369999999999999999322222 22446677777777664
No 23
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=48.94 E-value=22 Score=36.35 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHccCChHHH---HHHHHHHHHHHHHHHHH
Q 006642 506 GAPAVFVISHHWLQAMGMLPEKEV---AEALQSFCSSINQLLEQ 546 (637)
Q Consensus 506 ~aPpIf~lC~~W~~ald~lp~k~v---~~aIk~f~~~v~~i~~q 546 (637)
+-|.|+.+|+.|.+.|++-.--.| .-+-+.|+.+|..++.+
T Consensus 145 rvPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~~ 188 (230)
T KOG4503|consen 145 RVPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIRK 188 (230)
T ss_pred CCccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 369999999999999999322222 22446677777777664
No 24
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=48.18 E-value=1.3e+02 Score=26.67 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhhhcCcch---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006642 343 LYARKYKQMKSLDDKGAET---------LEAARTMLRALSTKIQIAFHVIDKMSISMNK 392 (637)
Q Consensus 343 ~yekK~~~Lr~~d~~g~~~---------idkTra~vk~L~tri~Vaiq~vdsis~~I~k 392 (637)
+.+.-..+|.++...|.|. ++.|+++|-+...||.-++..+..+-..-+.
T Consensus 22 E~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 22 EVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3333334444455556553 8999999999999999999888877555444
No 25
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=47.57 E-value=2e+02 Score=26.58 Aligned_cols=74 Identities=27% Similarity=0.422 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHhhhhhcCcch---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 317 TASLRKLCMWERKLY-DEVKAEEKLRILYARKYKQMKSLDDKGAET---------LEAARTMLRALSTKIQIAFHVIDKM 386 (637)
Q Consensus 317 ssTLdkLyaWEKKLY-~EVKa~E~~r~~yekK~~~Lr~~d~~g~~~---------idkTra~vk~L~tri~Vaiq~vdsi 386 (637)
..|+.||- =|+-+| .||+.+| .|...|+ ..|+|. ++.|+..|.+.+.|+.-+..-..+|
T Consensus 12 t~vvkRlv-KE~~~Yekev~~ee-------akvakl~---~dg~d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~~ 80 (107)
T KOG3470|consen 12 TGVVKRLV-KEVEYYEKEVKEEE-------AKVAKLK---DDGADPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLESI 80 (107)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHH---hcCCChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 35666663 234444 2555443 4555555 555554 8899999999999999999999998
Q ss_pred HhhhhcccccchhhH
Q 006642 387 SISMNKLRDEELWPQ 401 (637)
Q Consensus 387 s~~I~kLRDeEL~PQ 401 (637)
...=+-+-+..=|-+
T Consensus 81 l~~~~~~ee~~e~~~ 95 (107)
T KOG3470|consen 81 LADEQYLEETPELKS 95 (107)
T ss_pred HhcccchhccHHHHH
Confidence 877555544433333
No 26
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=47.46 E-value=8.2 Score=30.51 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=10.1
Q ss_pred CCCCccCCCChh
Q 006642 1 MGCSTSKLDNLP 12 (637)
Q Consensus 1 MGC~~SKld~~e 12 (637)
|||++|+.|-.|
T Consensus 1 mgcggsradaie 12 (53)
T PF06989_consen 1 MGCGGSRADAIE 12 (53)
T ss_pred CCCCcccccccc
Confidence 999999988654
No 27
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=46.34 E-value=1.4e+02 Score=26.72 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=45.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006642 517 WLQAMGMLPEKEVAEALQSFCSSINQLLEQHHVELQQMAM-----GRRDVDRKLKILEREEKKMQKAMQEREKKMT 587 (637)
Q Consensus 517 W~~ald~lp~k~v~~aIk~f~~~v~~i~~qQ~eE~~qk~~-----~~kelekk~~~le~~~~~~~~~~~~~~kk~~ 587 (637)
|...++. .+++|-.++...|..+|.+|.--.+ +|.+ -...++++++.|+........+++.+++++.
T Consensus 2 l~~~~~~-~~~ev~~~ve~vA~eLh~~YssKHE---~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 2 LKKKLEE-SQKEVEKAVEKVARELHALYSSKHE---TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHhHHhh-hHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 6789999999999999999976443 3332 3355777777777666555556666665543
No 28
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=44.16 E-value=22 Score=38.61 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhcc
Q 006642 36 DAHVAYMQSLKTLGPTLHQFFDHFS 60 (637)
Q Consensus 36 aaH~aY~qSLr~vG~ALr~F~e~e~ 60 (637)
..|+.+++++.++=..|+.|+-.+.
T Consensus 179 ~~hveWvks~~~l~~~L~~YVke~h 203 (312)
T PF01213_consen 179 PKHVEWVKSFKALLKELQAYVKEHH 203 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999997663
No 29
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.44 E-value=2e+02 Score=29.91 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHH
Q 006642 337 EEKLRILYARKYKQMKSLDDKGAET--LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVHR 408 (637)
Q Consensus 337 ~E~~r~~yekK~~~Lr~~d~~g~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~G 408 (637)
-++-|..|+..|..+.++...+... +||+++-+++....+.-+++....+-..- ++-+|+..+-+|-
T Consensus 125 l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~-----~~~m~~~~~~~Q~ 193 (261)
T cd07648 125 LQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADF-----ETKMTDSCKRFQE 193 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 3677889999999998886655423 77777777777666665555554443332 2444555544444
No 30
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=41.06 E-value=23 Score=28.16 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHhhccchhhhhhh
Q 006642 242 PGVSEVLKEVQVLFEKASESGNDVLKMF 269 (637)
Q Consensus 242 r~l~ev~keI~~~F~kAs~sg~eVs~mL 269 (637)
|++++++|+||..|+|.+=+|......+
T Consensus 5 k~ll~iLk~iDqdLvK~AisGe~Fqe~F 32 (48)
T PF12408_consen 5 KDLLDILKAIDQDLVKTAISGERFQECF 32 (48)
T ss_dssp --HHHHHHHS-HHHHHHHT-SHHHHHHH
T ss_pred hhHHHHHHHhCHHHHHHHhccHHHHHHH
Confidence 6999999999999999999998765544
No 31
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=40.50 E-value=70 Score=27.18 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 006642 364 AARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVHRLLIMWKAMLECH 420 (637)
Q Consensus 364 kTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH 420 (637)
.||..+|.+.-++-..++.++....-+...-...-||+ .-|..+||.|+.+|
T Consensus 7 Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~-----~~l~~~wk~ll~~q 58 (79)
T smart00872 7 TSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPS-----EQLEELWKALLLNQ 58 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHHHHhc
Confidence 46777888888877777777777665443322233554 35788999998764
No 32
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=38.09 E-value=5.4e+02 Score=27.64 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 006642 362 LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVHRLLIMWKAMLECHRRQSHIIMEAKSLDAIASNAK 441 (637)
Q Consensus 362 idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~ 441 (637)
|-.-+..+..++..+.|+--.+..+..+ .|=.+|.-+|..|.||=++|..+..-.|.|.....-.|
T Consensus 167 l~~LeqELvraEae~lvaEAqL~n~kR~--------------~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lldd~p 232 (271)
T PF13805_consen 167 LVVLEQELVRAEAENLVAEAQLSNIKRQ--------------KLKEAYSLKFDALIERAEKQAILAEYGKRLLELLDDTP 232 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 7777777777777777776666665554 56689999999999999999999998877665332111
Q ss_pred ------cchH-----HHHHHHHHHHHHHHHHHh
Q 006642 442 ------LENH-----HLEAAIKLKFELQNWYLN 463 (637)
Q Consensus 442 ------~se~-----h~~at~qLe~el~~W~~s 463 (637)
..-+ -++.....|..|..|...
T Consensus 233 v~PG~~r~~Y~g~~~t~qIl~dAe~~L~~w~~~ 265 (271)
T PF13805_consen 233 VVPGDTRPPYDGYEQTRQILNDAERALRSWQPD 265 (271)
T ss_dssp --TTS-------HHHHHHHHHHHHHHHHT----
T ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHhCccC
Confidence 1112 245566677777777643
No 33
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=36.96 E-value=1e+02 Score=37.21 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006642 608 QSFMAIERFAANSEQAYDELHL 629 (637)
Q Consensus 608 ~vF~aL~~Fs~~s~~~ye~l~~ 629 (637)
.+|+....|-.+.-++=++...
T Consensus 714 ~ff~~f~~F~~~~k~~~~ene~ 735 (830)
T KOG1923|consen 714 VFFQLFVRFVRAYKMARQENEQ 735 (830)
T ss_pred ccHHHHHHHHHHHHhhhhhhhh
Confidence 4677777776655444434333
No 34
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=36.94 E-value=1.5e+02 Score=32.47 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=59.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006642 314 RNLTASLRKLCMWERKLYDEVK----AEEKLRILYARKYKQMKSLDDKGAETLEAARTMLRALSTKIQIAFHVIDKMSIS 389 (637)
Q Consensus 314 gshssTLdkLyaWEKKLY~EVK----a~E~~r~~yekK~~~Lr~~d~~g~~~idkTra~vk~L~tri~Vaiq~vdsis~~ 389 (637)
.-|++|.-++++-+-+|-+=-| |--+-|.-|++|...-+.+++-- ..|+--.+.|..----+..+++.++.||.+
T Consensus 148 ~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk-~tv~~Leaev~~~K~~Y~~slrnLE~ISd~ 226 (426)
T KOG2008|consen 148 LVHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQK-KTVDDLEAEVTLAKGEYKMSLRNLEMISDE 226 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3599999999988766655433 44456778888887777665421 126666666766666788999999999999
Q ss_pred hhccccc
Q 006642 390 MNKLRDE 396 (637)
Q Consensus 390 I~kLRDe 396 (637)
|+.=|-.
T Consensus 227 IHeeRss 233 (426)
T KOG2008|consen 227 IHEERSS 233 (426)
T ss_pred HHHhhhh
Confidence 9877654
No 35
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=35.20 E-value=1.7e+02 Score=30.16 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=39.9
Q ss_pred HhhhHHHHHHHHHHHHHHhhhhhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 006642 334 VKAEEKLRILYARKYKQMKSLDDKGAET--LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDE 396 (637)
Q Consensus 334 VKa~E~~r~~yekK~~~Lr~~d~~g~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDe 396 (637)
||.-+..|++|+--|-.|+.+|....+. +|.+-.-|+.-.-.++.-.+.-..--.+-.|||.+
T Consensus 105 ikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~D 169 (215)
T cd07659 105 IKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQD 169 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999998655544 55555445444444444444444444445555543
No 36
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=33.88 E-value=5e+02 Score=26.00 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=27.4
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 599 TGSLHSGLKQSFMAIERFAANSEQAYDELHLR 630 (637)
Q Consensus 599 l~~Lq~~L~~vF~aL~~Fs~~s~~~ye~l~~~ 630 (637)
.+.|+.-||.+++.-..|-..|+.+|-.+...
T Consensus 146 N~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~ 177 (195)
T cd07589 146 NAQLKEELPKFNQLTAQLLETCLKSFVELQRD 177 (195)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998776654
No 37
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.28 E-value=5.7e+02 Score=26.52 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHccCCh----------HHHHHHHHHHHHHHHHHH
Q 006642 507 APAVFVISHHWLQAMGMLPE----------KEVAEALQSFCSSINQLL 544 (637)
Q Consensus 507 aPpIf~lC~~W~~ald~lp~----------k~v~~aIk~f~~~v~~i~ 544 (637)
.|....+|++|...++.|.+ +-|++=|+.|.+.+..|=
T Consensus 64 ~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~ 111 (225)
T cd07590 64 NDELRNLVEALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVN 111 (225)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567799999988877663 246778888888777663
No 38
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.20 E-value=93 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHH------HHHHHHHH
Q 006642 370 RALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVHRLL------IMWKAMLE 418 (637)
Q Consensus 370 k~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~------~MWk~M~e 418 (637)
+.|+=.|....|-||+==++.+++--..+.|.+-+--..-. ++|+.|+|
T Consensus 2 E~ldQ~iTl~LQeID~N~s~~~~iit~~IlP~v~rY~~~s~~i~~~~~fwk~fFe 56 (66)
T PF08655_consen 2 EQLDQEITLLLQEIDSNFSRCHRIITDKILPAVERYGESSEKIWDSAKFWKQFFE 56 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46778899999999999999999999999999876554433 78888876
No 39
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.16 E-value=6.1e+02 Score=26.82 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=25.7
Q ss_pred ccccccC-----cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 599 TGSLHSG-----LKQSFMAIERFAANSEQAYDELHLRI 631 (637)
Q Consensus 599 l~~Lq~~-----L~~vF~aL~~Fs~~s~~~ye~l~~~~ 631 (637)
+|.+|.. +|.||+.|-.|-..-+.-+.++...+
T Consensus 192 ~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~ 229 (252)
T cd07675 192 FNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGF 229 (252)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777 99999999998887777777665543
No 40
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=32.66 E-value=88 Score=26.68 Aligned_cols=55 Identities=20% Similarity=0.467 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 006642 362 LEAARTMLRALSTKIQIAFHVIDK--MSISMNKLRDEELWPQINDLVHRLLIMWKAMLE 418 (637)
Q Consensus 362 idkTra~vk~L~tri~Vaiq~vds--is~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~e 418 (637)
.+..-..++.|.. +.++.+.+.+ |-..+++||.-. -|++-.|...|.+=||.+.+
T Consensus 18 ~~~~l~~L~~L~~-~~~t~~~L~~T~iG~~v~~Lrkh~-~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 18 VSRCLDILKKLKK-LPITVDLLEETRIGKKVNGLRKHK-NEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHCcHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHhc
Confidence 5556666777775 6677766654 558899999875 69999999999999998753
No 41
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=32.50 E-value=2.7e+02 Score=26.73 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Q 006642 381 HVIDKMSISMNKLRDEELWPQINDLVHRLLIMWKAMLECHRRQSHIIMEAKSLDAIASNAKLENHHLEAAIKLKFELQNW 460 (637)
Q Consensus 381 q~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~se~h~~at~qLe~el~~W 460 (637)
.+|.+|-+||+. +|.-.+=+=+.|++-++.-=-....-.=.-...+.++..+.... .|...-..+-.-++.|
T Consensus 37 ~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-------~~~~Vk~kil~li~~W 108 (144)
T cd03568 37 DCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-------VHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-------CCHHHHHHHHHHHHHH
Confidence 344444455543 45444444555666544311111111112233344444333221 4556666666678899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHh
Q 006642 461 YLNFSDWNEAQKGYVKALNGWLLK 484 (637)
Q Consensus 461 ~~sF~~wI~aQk~YV~aLngWL~~ 484 (637)
...|.+ ..+-.||..++..|+.
T Consensus 109 ~~~f~~--~~~l~~i~~~y~~L~~ 130 (144)
T cd03568 109 ADEFKN--DPSLSLMSDLYKKLKN 130 (144)
T ss_pred HHHhCC--CcccHHHHHHHHHHHH
Confidence 999995 4678899999999987
No 42
>PRK09752 adhesin; Provisional
Probab=32.23 E-value=41 Score=42.36 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=7.6
Q ss_pred chhhhhhhhcCCCc
Q 006642 262 GNDVLKMFDAGKFR 275 (637)
Q Consensus 262 g~eVs~mLEa~k~~ 275 (637)
+..|-.-+|++=+|
T Consensus 1172 ~~~~QPYleaNW~H 1185 (1250)
T PRK09752 1172 AVHVIPTLDLNYYH 1185 (1250)
T ss_pred CceEeEEEEEEEEE
Confidence 34555666665443
No 43
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.82 E-value=1e+03 Score=29.06 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhhhhhcCcch-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 316 LTASLRKLCMWERKLYDE-VKAEEKLRILYARKYKQMKSLDDKGAET-------LEAARTMLRALSTKIQIAFHVIDKMS 387 (637)
Q Consensus 316 hssTLdkLyaWEKKLY~E-VKa~E~~r~~yekK~~~Lr~~d~~g~~~-------idkTra~vk~L~tri~Vaiq~vdsis 387 (637)
-..+|+=|.--=+.|++| ++--+++|.+.++++++|+.+..+=.+- +++.+..-+.|.-||.-+...=+.+.
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777899999 6778999999999999999886643322 44444444666667777766666676
Q ss_pred hhhhcc
Q 006642 388 ISMNKL 393 (637)
Q Consensus 388 ~~I~kL 393 (637)
+|+++|
T Consensus 614 ~R~~~v 619 (717)
T PF10168_consen 614 KRVDRV 619 (717)
T ss_pred HHHHHH
Confidence 766655
No 44
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=31.59 E-value=28 Score=39.68 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCCcCCC
Q 006642 156 NKTPPPPTPSSSAWDFLNF 174 (637)
Q Consensus 156 ~ppPPPppp~~s~WDF~np 174 (637)
.||||||||.....+||+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~ 35 (461)
T PLN03132 17 QPPPPPPPPEKTHFGGLKD 35 (461)
T ss_pred CCcccCCCCcccCCCcccc
Confidence 3566667777777777764
No 45
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=31.55 E-value=4.2e+02 Score=27.46 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=78.5
Q ss_pred HHHHhhhhcccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccc--ccccchHHHHHH---HHHHH
Q 006642 384 DKMSISMNKLRDEE-LWPQINDLVHRLLIMWKAMLECHRRQSHIIMEAKSLDA--IAS--NAKLENHHLEAA---IKLKF 455 (637)
Q Consensus 384 dsis~~I~kLRDeE-L~PQL~eLi~GL~~MWk~M~ecHq~Q~~ii~~~k~l~~--~~~--~~~~se~h~~at---~qLe~ 455 (637)
|...++|+.|||.+ .|-+|+++...|++=...|..+|+.=-.+..++---.. ..+ -...+|.||... ..|..
T Consensus 2 d~l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~ll~ 81 (215)
T cd07659 2 DGLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIELLK 81 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHHHH
Confidence 45668899999864 68999999999999999999999888777776642111 111 112347787554 56777
Q ss_pred HHHHHHHhHHHHHH--------HHHHHHHHHHHHHHhhcC
Q 006642 456 ELQNWYLNFSDWNE--------AQKGYVKALNGWLLKCLA 487 (637)
Q Consensus 456 el~~W~~sF~~wI~--------aQk~YV~aLngWL~~cl~ 487 (637)
.+....++++-+++ ..|.|..|=...|.-|+.
T Consensus 82 ai~~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~k 121 (215)
T cd07659 82 TLKPMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLK 121 (215)
T ss_pred HhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876 689999999999999985
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.92 E-value=2e+02 Score=30.30 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 006642 318 ASLRKLCMWERKLYDEVKAEEKLRILYARKYKQMKSLDDKGAETLEAARTMLRALSTKIQIAFHVIDKMSISMNKLRD 395 (637)
Q Consensus 318 sTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~~g~~~idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRD 395 (637)
.-|+.|++=. +|+.|.-.-+..+..|.+-++.++..-.+--+.+..++..+++|..++.---.-|..++.+|.++++
T Consensus 4 ~~~~~L~~iq-~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 4 NNLKSLLAIQ-KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888 8988887777766677777776666654443447777788888888888777778888888888753
No 47
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.31 E-value=5.1e+02 Score=27.38 Aligned_cols=93 Identities=13% Similarity=0.256 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhh--cCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhccccc---chhhHH
Q 006642 336 AEEKLRILYARKYKQMKSLDD--KGAET-LEAARTMLRALSTKIQIAFHVIDKMSI-------SMNKLRDE---ELWPQI 402 (637)
Q Consensus 336 a~E~~r~~yekK~~~Lr~~d~--~g~~~-idkTra~vk~L~tri~Vaiq~vdsis~-------~I~kLRDe---EL~PQL 402 (637)
.-|+-+..|++-|+-...--. ..++. +.-|++.++++..+.....|.++..-. ..|++-+. +.-|++
T Consensus 128 ~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~v 207 (252)
T cd07675 128 QMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQI 207 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 446788899988876544322 23444 666888888888888888888874331 24445444 667888
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 006642 403 NDLVHR--------LLIMWKAMLECHRRQSHIIM 428 (637)
Q Consensus 403 ~eLi~G--------L~~MWk~M~ecHq~Q~~ii~ 428 (637)
++-+|. |..||+.-.+-...=.-||.
T Consensus 208 fd~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~i~ 241 (252)
T cd07675 208 YKQLQEMDERRTVKLSECYRGFADSERKVIPIIS 241 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888775 55677766555544444444
No 48
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=30.23 E-value=1.3e+02 Score=34.02 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=11.3
Q ss_pred HHHHHHHHh---hccchhhhhhhh
Q 006642 250 EVQVLFEKA---SESGNDVLKMFD 270 (637)
Q Consensus 250 eI~~~F~kA---s~sg~eVs~mLE 270 (637)
.+|++=.++ ..-|++|+-+|=
T Consensus 471 KVeeqreqeakr~~v~ndvatiLs 494 (518)
T KOG1830|consen 471 KVEEQREQEAKREAVENDVATILS 494 (518)
T ss_pred HHHHHHHHHHhhccccchHHHHHH
Confidence 344444333 335777777764
No 49
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=29.57 E-value=1.4e+02 Score=28.38 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHccCChHHHHH---HHHHHHHHHHHHHHH
Q 006642 507 APAVFVISHHWLQAMGMLPEKEVAE---ALQSFCSSINQLLEQ 546 (637)
Q Consensus 507 aPpIf~lC~~W~~ald~lp~k~v~~---aIk~f~~~v~~i~~q 546 (637)
.|.+-..|++|..-|.+=|+..... ..+.|+..|+.+++.
T Consensus 65 vPALe~~C~~We~CMn~Dp~~~~~~~~l~ae~laeiiN~Fie~ 107 (135)
T PF10104_consen 65 VPALEEQCDEWEKCMNRDPDSIGRSSILSAETLAEIINSFIEP 107 (135)
T ss_pred CcHHHHHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHhH
Confidence 6899999999999999977665333 457888888888775
No 50
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=28.68 E-value=6.6e+02 Score=25.85 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC----------------CCCCCCCChHHH
Q 006642 449 AAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATF----------------SPGRIGAPAVFV 512 (637)
Q Consensus 449 at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~----------------SP~r~~aPpIf~ 512 (637)
--.+||.++..++....+++.+=..||+ ||.+-.. +. .++.+.+ .+.-..+ ....
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~y~~----~l~k~~~--~g--~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G-~aL~ 78 (215)
T cd07593 8 EFLELEKEIELRKEGMERLHRSTEAYVE----YLSKKKP--LL--DDKDKCLPVEALGLVMINHGEEFPQDSEYG-SCLS 78 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCc--cc--cccccCChHHHHHHHHHHHHhhCCCCChHH-HHHH
Confidence 3578999999999999999999888887 4444221 00 1111111 1100001 1234
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHHHHHHH
Q 006642 513 ISHHWLQAMGMLPEKEVAEALQSFCSSINQLLE 545 (637)
Q Consensus 513 lC~~W~~ald~lp~k~v~~aIk~f~~~v~~i~~ 545 (637)
.|.+=...|..+-+.=+.....+|...|+....
T Consensus 79 ~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~ 111 (215)
T cd07593 79 KLGRAHCKIGTLQEEFADRLSDTFLANIERSLA 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666566666677777766654
No 51
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=28.19 E-value=33 Score=30.34 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.3
Q ss_pred ccchhhHHHHHHHH
Q 006642 395 DEELWPQINDLVHR 408 (637)
Q Consensus 395 DeEL~PQL~eLi~G 408 (637)
-|||||||.|+..-
T Consensus 18 pe~~wpql~e~~s~ 31 (106)
T PF09241_consen 18 PEDFWPQLFEATSI 31 (106)
T ss_dssp -GGGHHHHHHHHHH
T ss_pred cHHHhHHHHHHHHH
Confidence 48999999998754
No 52
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.87 E-value=1.3e+02 Score=29.13 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 006642 338 EKLRILYARKYKQMKSLDDKGAETLEAARTMLRALSTKIQIAFHVIDKMSISMNKLRD 395 (637)
Q Consensus 338 E~~r~~yekK~~~Lr~~d~~g~~~idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRD 395 (637)
++|+-+|..+...||.+ +-.-|+.++.|.+.=..+-+.|.+.+++|..||+
T Consensus 53 q~I~~~f~~~t~~LRqq-------L~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQ-------LVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34455555555555532 2233444445544444555555555555555555
No 53
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=26.33 E-value=86 Score=37.80 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 006642 13 AVALCRDRCRFLE 25 (637)
Q Consensus 13 aV~lCreRk~~lk 25 (637)
+=.+|+||-+-+.
T Consensus 172 ~~~isher~~~v~ 184 (830)
T KOG1923|consen 172 ADQISHERLQAVE 184 (830)
T ss_pred hhhhhHHHHHHHH
Confidence 4456666655444
No 54
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.62 E-value=7.4e+02 Score=25.40 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHHHhhhhhcCcch-HHHHHHHHHHHHHHHH
Q 006642 317 TASLRKLCMWERKLYDEV------------------KAEEKLRILYARKYKQMKSLDDKGAET-LEAARTMLRALSTKIQ 377 (637)
Q Consensus 317 ssTLdkLyaWEKKLY~EV------------------Ka~E~~r~~yekK~~~Lr~~d~~g~~~-idkTra~vk~L~tri~ 377 (637)
..-+++|-.|-+++.++. +.-++.|..|+.+|+.+......-... -+.+...++++..|+.
T Consensus 84 ~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~ 163 (239)
T cd07647 84 REEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAA 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 334455666655555553 355677899999999886542211111 1123344555555555
Q ss_pred HHHHHHHHH
Q 006642 378 IAFHVIDKM 386 (637)
Q Consensus 378 Vaiq~vdsi 386 (637)
-+.+.++..
T Consensus 164 k~~~~~~~a 172 (239)
T cd07647 164 QCKTSAEEA 172 (239)
T ss_pred HHHHHHHHH
Confidence 555555443
No 55
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=25.54 E-value=7.5e+02 Score=25.45 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
Q 006642 447 LEAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLA 487 (637)
Q Consensus 447 ~~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~ 487 (637)
.+....|.........+...+.++||.|+.+|+..=.-|+-
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~g 55 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIG 55 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45677788888888888999999999999999999888874
No 56
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=25.50 E-value=7.6e+02 Score=25.49 Aligned_cols=156 Identities=14% Similarity=0.181 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHH----HHHHHHHHHcc
Q 006642 448 EAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFV----ISHHWLQAMGM 523 (637)
Q Consensus 448 ~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~----lC~~W~~ald~ 523 (637)
..|..|-.|+...-.+....-++|+..-++|.+ .|+|+- +|. ..---|.. +|++....+.
T Consensus 26 ~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e------~Y~~~~--~~~-------~~~~~v~e~~d~~~~~~~~~~~- 89 (211)
T cd07612 26 SDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD------IYEPDW--DGH-------EDLGAIVEGEDLLWNDYEAKLH- 89 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCCc--Ccc-------cHHHHHHhccHHHHHHHHHHHH-
Confidence 467778888888888888888899999999888 234432 111 00001222 4444444433
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhcc----------------cchHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 006642 524 LPEKEVAEALQSFCSSINQLLEQHHVELQQMAMGR----------------RDVDRKLKILEREEKKMQKAMQEREKKM- 586 (637)
Q Consensus 524 lp~k~v~~aIk~f~~~v~~i~~qQ~eE~~qk~~~~----------------kelekk~~~le~~~~~~~~~~~~~~kk~- 586 (637)
+.|++-|..|.+.+-.|=..=.+ +-++..+ |+ +.|+..-|.+....+...+.++..+
T Consensus 90 ---~~vL~pi~~~~s~f~~i~~~i~K--R~~KllDYD~~R~~~~kl~~k~~kD-~~KL~kAe~el~~Ak~~ye~lN~~L~ 163 (211)
T cd07612 90 ---DQALRTMESYMAQFPDVKERVAK--RGRKLVDYDSARHHLEALQNAKKKD-DAKIAKAEEEFNRAQVVFEDINRELR 163 (211)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999887776433221 1111111 11 2223222222222222233333322
Q ss_pred ---hhhhhhhhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 587 ---TSLAREWNKITSTGSLHSGLKQSFMAIERFAANSEQAYDELHLR 630 (637)
Q Consensus 587 ---~~~~~~~~~~t~l~~Lq~~L~~vF~aL~~Fs~~s~~~ye~l~~~ 630 (637)
..+- ..- +.-+..+|..||..=..|..++.+.+.+|...
T Consensus 164 ~ELP~L~----~~R-i~f~~psFeal~~~q~~F~~E~~k~~~~l~~~ 205 (211)
T cd07612 164 EELPILY----DSR-IGCYVTVFQNISNLRDTFYKEMSKLNHDLYNV 205 (211)
T ss_pred HHHHHHH----Hhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 111 45666667777777778888888888887654
No 57
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.12 E-value=7e+02 Score=25.78 Aligned_cols=40 Identities=5% Similarity=0.139 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
Q 006642 448 EAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLA 487 (637)
Q Consensus 448 ~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~ 487 (637)
+..-.|..+......+.-.+..+||.|+.+|+..=.-|+-
T Consensus 16 ~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~ig 55 (207)
T cd07633 16 KFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIG 55 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3455667777778888999999999999999999888874
No 58
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.12 E-value=53 Score=41.29 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 006642 459 NWYLNFSDWNEAQKGYVKALNGWLLKCL 486 (637)
Q Consensus 459 ~W~~sF~~wI~aQk~YV~aLngWL~~cl 486 (637)
.|.-+..-|...=|+-|--|-.||-.-+
T Consensus 658 fW~p~WRvWlfflRG~iPLLeRyignLv 685 (2365)
T COG5178 658 FWGPQWRVWLFFLRGHIPLLERYIGNLV 685 (2365)
T ss_pred cccHHHHHHHHHHhcccHHHHHHHhHHH
Confidence 3666666677777777777777775533
No 59
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.99 E-value=3.8e+02 Score=32.55 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 006642 528 EVAEALQSFCSSINQLLEQHHVELQQ 553 (637)
Q Consensus 528 ~v~~aIk~f~~~v~~i~~qQ~eE~~q 553 (637)
.|.++|+.-+..+..+.++|-++.++
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888877664
No 60
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.88 E-value=6.4e+02 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006642 446 HLEAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWL 482 (637)
Q Consensus 446 h~~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL 482 (637)
.+.-..+||.-|...+..+..+++.+++...++..-=
T Consensus 9 ~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg 45 (218)
T cd07596 9 AKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFG 45 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999988888777665443
No 61
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=24.68 E-value=5.8e+02 Score=26.90 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCcch-HHHHH--------HH---HHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHH
Q 006642 338 EKLRILYARKYKQMKSLDDKGAET-LEAAR--------TM---LRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDL 405 (637)
Q Consensus 338 E~~r~~yekK~~~Lr~~d~~g~~~-idkTr--------a~---vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eL 405 (637)
|+++..|+.-|.-......|..++ -||.+ .+ +-.+|-.+.++|..+...=..-- ....|-|++.
T Consensus 134 eK~Kk~Y~~~c~~~e~AR~K~ekas~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy----~q~lP~LLd~ 209 (237)
T cd07685 134 EKLKSQYRSLAKDSAQAKRKYQEASKDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHY----QRILPGLLES 209 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----hhccHHHHHH
Confidence 678888888887665544444433 22221 12 23456677888777654433221 2344666655
Q ss_pred H----HHHHHHHHHHHH
Q 006642 406 V----HRLLIMWKAMLE 418 (637)
Q Consensus 406 i----~GL~~MWk~M~e 418 (637)
. ++++.+|+.++.
T Consensus 210 lQ~lnE~~v~~Ln~il~ 226 (237)
T cd07685 210 LQSLHEEMVLILKEILQ 226 (237)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5 456778877664
No 62
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.07 E-value=4.6e+02 Score=27.51 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHhhhhhcCcch---HHHHHHHHHHHHHHHHHHHH
Q 006642 316 LTASLRKLCMWERKLYDEVK-----------AEEKLRILYARKYKQMKSLDDKGAET---LEAARTMLRALSTKIQIAFH 381 (637)
Q Consensus 316 hssTLdkLyaWEKKLY~EVK-----------a~E~~r~~yekK~~~Lr~~d~~g~~~---idkTra~vk~L~tri~Vaiq 381 (637)
+.+-+.++=.|-|.+|.+.. .-|+.+..|++-|+.-...-.+-..+ ++-|++.++++..+.....|
T Consensus 98 l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~ 177 (253)
T cd07676 98 LTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQ 177 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh----------hhcccccchhhHHHHHHHHH
Q 006642 382 VIDKMSIS----------MNKLRDEELWPQINDLVHRL 409 (637)
Q Consensus 382 ~vdsis~~----------I~kLRDeEL~PQL~eLi~GL 409 (637)
.++..-.. .+.-.=.|.-|++++.+|-|
T Consensus 178 ~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~l 215 (253)
T cd07676 178 MAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEM 215 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 63
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=23.63 E-value=9.3e+02 Score=25.85 Aligned_cols=19 Identities=32% Similarity=0.781 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006642 404 DLVHRLLIMWKAMLECHRR 422 (637)
Q Consensus 404 eLi~GL~~MWk~M~ecHq~ 422 (637)
+||+---.||+-|-+|+.+
T Consensus 20 ~l~~eCEe~wk~me~~q~k 38 (268)
T PF11802_consen 20 ELIKECEELWKDMEECQNK 38 (268)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777899999998754
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.96 E-value=4.8e+02 Score=24.54 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhhhhhcCc-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006642 316 LTASLRKLCMWERKLYDEVKAEEKLRILYARKYKQ-MKSLDDKGA-ET-LEAARTMLRALSTKIQIAFHVIDKMSISMNK 392 (637)
Q Consensus 316 hssTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~-Lr~~d~~g~-~~-idkTra~vk~L~tri~Vaiq~vdsis~~I~k 392 (637)
++++|.+|=.-=--|=+|+..-+.-|-.-....-. .+.-|...+ .. ++.-+..+++|..|+..+.+-+-.-+-.++.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34444444333333344444444444333333322 333333222 23 8999999999999999999999888888888
Q ss_pred cccc
Q 006642 393 LRDE 396 (637)
Q Consensus 393 LRDe 396 (637)
||.+
T Consensus 101 L~~D 104 (120)
T PF12325_consen 101 LRAD 104 (120)
T ss_pred HHHH
Confidence 8865
No 65
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=22.28 E-value=9e+02 Score=25.15 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHccCC--hHHHHHHH
Q 006642 456 ELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHHWLQAMGMLP--EKEVAEAL 533 (637)
Q Consensus 456 el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~W~~ald~lp--~k~v~~aI 533 (637)
-+..-+.+=..+|.+++.||.+|+.-=..||.... |.| ..++.++. -++++.-.
T Consensus 24 ~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd-----------------~~i-------~~a~~kfs~~~~El~~~~ 79 (215)
T cd07641 24 SVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDN-----------------PDL-------GTAFVKFSTLTKELSTLL 79 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-----------------hhH-------HHHHHHHHHHHHHHHHHH
Confidence 33444555566888899999999988888875221 111 12233322 25677777
Q ss_pred HHHHHHHHHHHHHhHH
Q 006642 534 QSFCSSINQLLEQHHV 549 (637)
Q Consensus 534 k~f~~~v~~i~~qQ~e 549 (637)
+.|+-.+..++..|-+
T Consensus 80 k~L~~~~~~~v~~~L~ 95 (215)
T cd07641 80 KNLLQGLSHNVIFTLD 95 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888777777776653
No 66
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=22.00 E-value=7.2e+02 Score=25.76 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=52.6
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhhh-------cCcch-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccch
Q 006642 333 EVKAEEKLRILYARKYKQMKSLDD-------KGAET-------LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEEL 398 (637)
Q Consensus 333 EVKa~E~~r~~yekK~~~Lr~~d~-------~g~~~-------idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL 398 (637)
-||.-|..|++|+--|..|+.++. .+.+. +..+|+--.+|.+.+.|-++-++.- |-.-+
T Consensus 135 Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~-------rv~~~ 207 (229)
T PF06456_consen 135 TIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDEN-------RVNVM 207 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHH
Confidence 378999999999999999999982 11111 3445555556666666655555432 23446
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 006642 399 WPQINDLVHRLLIMWKAML 417 (637)
Q Consensus 399 ~PQL~eLi~GL~~MWk~M~ 417 (637)
.-||.-|..+|+.-|....
T Consensus 208 ~~qL~~~~~al~~y~~~~~ 226 (229)
T PF06456_consen 208 SHQLVLFQNALAAYFSGNA 226 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 7789999999888887554
No 67
>KOG4411 consensus Phytoene/squalene synthetase [Lipid transport and metabolism]
Probab=21.99 E-value=1.3e+02 Score=31.73 Aligned_cols=49 Identities=31% Similarity=0.473 Sum_probs=39.8
Q ss_pred HHHHHHHHccC--------ChHHHHHHHHHHHHH--HHHHHHHhHHHHHhhhhcccchH
Q 006642 514 SHHWLQAMGML--------PEKEVAEALQSFCSS--INQLLEQHHVELQQMAMGRRDVD 562 (637)
Q Consensus 514 C~~W~~ald~l--------p~k~v~~aIk~f~~~--v~~i~~qQ~eE~~qk~~~~kele 562 (637)
..=|+++||++ |+.-|..|+++|++. ++.-|-..--|-+|+-..++-+|
T Consensus 68 L~fW~daIdk~y~~~p~~v~~qPva~aL~~~~~~~~~nk~~L~rlV~aR~r~~~d~~fe 126 (292)
T KOG4411|consen 68 LQFWKDAIDKIYGISPLPVPRQPVAIALCSFAAGHNANKDMLLRLVEARQRTIGDRQFE 126 (292)
T ss_pred HHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhccccCHHHHHHHHHHhhcCCcccchH
Confidence 46799999975 788999999999999 88888888888888855554443
No 68
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=21.19 E-value=8.3e+02 Score=24.35 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 006642 446 HLEAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLK 484 (637)
Q Consensus 446 h~~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~ 484 (637)
.++-.-.||.-|..-+..+..+++.++++..++..--.-
T Consensus 29 ~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~ 67 (236)
T PF09325_consen 29 IKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSS 67 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999988865544
No 69
>PF15195 TMEM210: TMEM210 family
Probab=21.12 E-value=55 Score=29.73 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhHH
Q 006642 39 VAYMQSLKTLGPT 51 (637)
Q Consensus 39 ~aY~qSLr~vG~A 51 (637)
+|.+--|..||+.
T Consensus 15 IALlVVLAgv~as 27 (116)
T PF15195_consen 15 IALLVVLAGVSAS 27 (116)
T ss_pred HHHHHHHhccchh
Confidence 4455555555553
No 70
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.75 E-value=2e+02 Score=25.09 Aligned_cols=42 Identities=14% Similarity=0.419 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-hhcC
Q 006642 317 TASLRKLCMWERKLYDEVKAEEKLRILYARKYKQMKSL-DDKG 358 (637)
Q Consensus 317 ssTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~-d~~g 358 (637)
.+=+.=+=.|-.|+|+-=.+--+||-.|+....+||++ +.||
T Consensus 35 ~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 35 NSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455677899999999999999999999999999986 5555
Done!