Query 006642
Match_columns 637
No_of_seqs 168 out of 249
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a3a_A Amphiphysin; structural 84.7 25 0.00086 35.0 15.7 80 448-543 52-132 (243)
2 2v0o_A FCHO2, FCH domain only 75.1 55 0.0019 32.0 14.5 70 335-409 136-207 (276)
3 2fic_A Bridging integrator 1; 72.6 74 0.0025 31.0 15.4 31 601-631 216-246 (251)
4 1uru_A Amphiphysin; endocytosi 69.0 84 0.0029 30.2 14.2 92 333-431 134-237 (244)
5 1uru_A Amphiphysin; endocytosi 54.4 1.3E+02 0.0046 28.7 12.4 31 600-630 202-232 (244)
6 3mxz_A Tubulin-specific chaper 52.9 1.2E+02 0.0039 27.2 10.5 28 362-389 58-85 (116)
7 2j9u_A VPS28, vacuolar protein 51.8 19 0.00064 31.4 4.9 79 380-466 15-93 (96)
8 2j9w_A VPS28, VPS28-PROV prote 51.7 28 0.00096 30.6 6.1 80 380-467 18-99 (102)
9 3caz_A BAR protein; thermo-aci 47.2 2.1E+02 0.0072 27.8 14.3 102 245-416 80-183 (294)
10 2efl_A Formin-binding protein 47.1 2.2E+02 0.0074 28.0 13.6 46 329-374 131-186 (305)
11 2fic_A Bridging integrator 1; 46.8 2.1E+02 0.0072 27.7 13.2 87 332-418 148-237 (251)
12 2efk_A CDC42-interacting prote 41.8 2.5E+02 0.0086 27.6 12.4 23 334-356 129-151 (301)
13 4efa_E V-type proton ATPase su 39.6 83 0.0028 30.7 8.2 67 336-404 54-122 (233)
14 4dyl_A Tyrosine-protein kinase 39.5 1.6E+02 0.0056 31.1 11.1 67 335-408 134-215 (406)
15 1h7c_A Tubulin-specific chaper 39.0 1.9E+02 0.0065 25.3 9.6 37 362-398 57-93 (108)
16 2v71_A Nuclear distribution pr 36.1 53 0.0018 31.8 5.9 58 339-396 99-169 (189)
17 1qsd_A Protein (beta-tubulin b 33.7 2.3E+02 0.008 24.7 9.2 38 362-402 55-92 (106)
18 2v66_B Nuclear distribution pr 32.5 60 0.002 28.9 5.2 47 338-384 45-94 (111)
19 2xvc_A ESCRT-III, SSO0910; cel 31.2 24 0.00083 28.0 2.1 33 327-359 12-54 (59)
20 2k48_A Nucleoprotein; viral pr 29.5 2.4E+02 0.0083 24.8 8.4 50 328-377 38-92 (107)
21 2ic6_A Nucleocapsid protein; h 29.0 2.5E+02 0.0087 23.4 8.4 57 314-377 1-62 (78)
22 3rq9_A TSI2, type VI secretion 29.0 53 0.0018 27.3 3.9 35 376-410 8-45 (85)
23 3s84_A Apolipoprotein A-IV; fo 28.5 4.7E+02 0.016 26.3 12.0 44 508-556 33-76 (273)
24 3stq_A TSI2, putative uncharac 27.9 63 0.0022 27.6 4.3 34 376-409 33-69 (102)
25 4aj5_1 SKA3, spindle and kinet 26.9 2.8E+02 0.0094 24.3 8.2 84 310-395 8-95 (101)
26 2efl_A Formin-binding protein 26.0 4.7E+02 0.016 25.5 14.7 75 449-540 25-99 (305)
27 3i2w_A Syndapin, LD46328P; EFC 24.6 4.8E+02 0.016 25.6 11.1 71 334-409 134-221 (290)
28 3ljm_A Coil Ser L9C; de novo d 24.4 98 0.0034 20.9 3.8 22 561-582 6-27 (31)
29 3aco_A Pacsin2, protein kinase 24.4 5.7E+02 0.019 25.9 14.2 74 335-408 157-242 (350)
30 3nmd_A CGMP dependent protein 23.8 1.1E+02 0.0039 25.2 5.0 41 537-577 21-61 (72)
31 1wmi_B RELB, hypothetical prot 23.7 35 0.0012 27.2 1.8 37 362-399 3-42 (67)
32 3abh_A Pacsin2, protein kinase 21.6 6E+02 0.02 25.1 12.8 70 335-409 157-243 (312)
33 3t98_B Nucleoporin NUP58/NUP45 20.1 2.5E+02 0.0087 24.0 6.7 68 561-630 10-77 (93)
No 1
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=84.75 E-value=25 Score=34.98 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHH-HHHHHccCCh
Q 006642 448 EAAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHH-WLQAMGMLPE 526 (637)
Q Consensus 448 ~at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~-W~~ald~lp~ 526 (637)
..+..|..++..|..+......+|....++|.+ .++|.. .+....+.+...|.. |.+--++|++
T Consensus 52 ~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~------ly~p~~---------~~~~~~~~~~~~~~~l~~d~~~~l~d 116 (243)
T 4a3a_A 52 AEGTRLQRELRGYLAAIKGMQEASMKLTESLHE------VYEPDW---------YGREDVKMVGEKCDVLWEDFHQKLVD 116 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCTTS---------TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCccc---------cCccchHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888888776 244431 111123345556654 7766666654
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006642 527 KEVAEALQSFCSSINQL 543 (637)
Q Consensus 527 k~v~~aIk~f~~~v~~i 543 (637)
.|+.-|..|.+.+..+
T Consensus 117 -~~l~Pl~~l~~~f~~i 132 (243)
T 4a3a_A 117 -GSLLTLDTYLGQFPDI 132 (243)
T ss_dssp -THHHHHHHHHHTHHHH
T ss_pred -HHHHHHHHHHHHChHH
Confidence 3445566666555444
No 2
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=75.08 E-value=55 Score=32.05 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHH
Q 006642 335 KAEEKLRILYARKYKQMKSLDDKGAET--LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVHRL 409 (637)
Q Consensus 335 Ka~E~~r~~yekK~~~Lr~~d~~g~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL 409 (637)
++-++.|..|+++|+.+.++...|... ++|.++-+.+....+..+++..+.+-. +. ++..|++++.+|.|
T Consensus 136 ~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~---~~--~~~~~~~~~~lQ~l 207 (276)
T 2v0o_A 136 QALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKA---DF--EQKMTETAQKFQDI 207 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH
Confidence 456778999999999988776555544 999999999888888888887765543 33 46778888776654
No 3
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=72.57 E-value=74 Score=31.00 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=21.2
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 601 SLHSGLKQSFMAIERFAANSEQAYDELHLRI 631 (637)
Q Consensus 601 ~Lq~~L~~vF~aL~~Fs~~s~~~ye~l~~~~ 631 (637)
-+...|..++.+-..|...+.+.+++|....
T Consensus 216 ~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l 246 (251)
T 2fic_A 216 FYVNTFQSIAGLEENFHKEMSKLNQNLNDVL 246 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777776654
No 4
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=69.00 E-value=84 Score=30.19 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhhhcC-----------cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhh
Q 006642 333 EVKAEEKLRILYARKYKQMKSLDDKG-----------AET-LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWP 400 (637)
Q Consensus 333 EVKa~E~~r~~yekK~~~Lr~~d~~g-----------~~~-idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~P 400 (637)
.+|-.+.-++.||+.-..|.++..++ ++. .+.++..-..|...+.-.+ -.+..+|.+-+.|
T Consensus 134 ~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eL-------p~l~~~~~~~~~~ 206 (244)
T 1uru_A 134 KVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDEL-------PALYDSRILFLVT 206 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHH
Confidence 34466788899999988888877654 223 5555555555555444433 3456677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006642 401 QINDLVHRLLIMWKAMLECHRRQSHIIMEAK 431 (637)
Q Consensus 401 QL~eLi~GL~~MWk~M~ecHq~Q~~ii~~~k 431 (637)
.|..++.......+.|.+.|+.=..++..+.
T Consensus 207 ~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~ 237 (244)
T 1uru_A 207 NLQTLFATEQVFHNETAKIYSELEAIVDKLA 237 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888887777666555443
No 5
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=54.36 E-value=1.3e+02 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=22.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 600 GSLHSGLKQSFMAIERFAANSEQAYDELHLR 630 (637)
Q Consensus 600 ~~Lq~~L~~vF~aL~~Fs~~s~~~ye~l~~~ 630 (637)
.-+...|..++.+-..|...+.+.|+.|...
T Consensus 202 ~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~ 232 (244)
T 1uru_A 202 LFLVTNLQTLFATEQVFHNETAKIYSELEAI 232 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777788888888888887653
No 6
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=52.86 E-value=1.2e+02 Score=27.18 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006642 362 LEAARTMLRALSTKIQIAFHVIDKMSIS 389 (637)
Q Consensus 362 idkTra~vk~L~tri~Vaiq~vdsis~~ 389 (637)
++.|+..|-+++.||.-++..+..+-..
T Consensus 58 L~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 58 LGESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999888777765543
No 7
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=51.81 E-value=19 Score=31.41 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Q 006642 380 FHVIDKMSISMNKLRDEELWPQINDLVHRLLIMWKAMLECHRRQSHIIMEAKSLDAIASNAKLENHHLEAAIKLKFELQN 459 (637)
Q Consensus 380 iq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~se~h~~at~qLe~el~~ 459 (637)
|..+|++.-.|--. ++|+|-|.+|+.+|.||=..=.+.+.+-.+-+..++ .......-+| +-+.||.-.|..
T Consensus 15 IT~mDaLKL~~~a~--DqLhP~L~dL~~sl~r~~~~dfegk~kv~~Wl~~Ln---~M~AsdeL~e---~q~RqllfDle~ 86 (96)
T 2j9u_A 15 ITVMDALKLNYNAK--DQLHPLLAELLISINRVTRDDFENRSKLIDWIVRIN---KLSIGDTLTE---TQIRELLFDLEL 86 (96)
T ss_dssp HHHHHHHHTTCCBH--HHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHH---TSCTTCBCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhH--HhhCchHHHHHHHccCCCCCCCchHHHHHHHHHHHc---CCcccccCCH---HHHHHHHHHHHH
Confidence 45566665555444 799999999999999983222234444444444444 4443344444 344555555555
Q ss_pred HHHhHHH
Q 006642 460 WYLNFSD 466 (637)
Q Consensus 460 W~~sF~~ 466 (637)
=|+.|..
T Consensus 87 aY~~F~~ 93 (96)
T 2j9u_A 87 AYKSFYA 93 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666654
No 8
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=51.70 E-value=28 Score=30.61 Aligned_cols=80 Identities=18% Similarity=0.427 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Q 006642 380 FHVIDKMSISMNKLRDEELWPQINDLVHRLLIMWK--AMLECHRRQSHIIMEAKSLDAIASNAKLENHHLEAAIKLKFEL 457 (637)
Q Consensus 380 iq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk--~M~ecHq~Q~~ii~~~k~l~~~~~~~~~se~h~~at~qLe~el 457 (637)
|..+|++.-.|--. ++|+|-|.+|+.+|.+|=. .=.+.+.+-.+-+..++ .+.+...-+| +-+.||-..|
T Consensus 18 IT~mDaLKLn~~a~--DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln---~M~AsdeL~e---~q~RqllfDl 89 (102)
T 2j9w_A 18 ITVMDKLRLEIRAM--DEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLS---SMSASDELDD---SQVRQMLFDL 89 (102)
T ss_dssp HHHHHHHHTTCCBH--HHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHH---TSCTTCBCCH---HHHHHHHHHH
T ss_pred HHHHHHHHhcchhH--HhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHc---CCcccccCCH---HHHHHHHHHH
Confidence 45667666555444 7999999999999999821 11244444444444444 4444344444 3444555555
Q ss_pred HHHHHhHHHH
Q 006642 458 QNWYLNFSDW 467 (637)
Q Consensus 458 ~~W~~sF~~w 467 (637)
..=|..|...
T Consensus 90 e~aY~~F~~~ 99 (102)
T 2j9w_A 90 ESAYNAFNRF 99 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555556543
No 9
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=47.23 E-value=2.1e+02 Score=27.85 Aligned_cols=102 Identities=14% Similarity=0.295 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhcCCCccCCccccccccccccccccCCCccccccCCCCcccccccchHHHHHHHH
Q 006642 245 SEVLKEVQVLFEKASESGNDVLKMFDAGKFRYHHKYYSLSQVSSKMFKAVAPSKPLRYQRLDDDDVLNSRNLTASLRKLC 324 (637)
Q Consensus 245 ~ev~keI~~~F~kAs~sg~eVs~mLEa~k~~~~~~~~~~~~~ssk~l~~~sps~~~~~~~~~~~~~~~~gshssTLdkLy 324 (637)
+.+.-+.|-.++..-.-|+||++|||- ++- .+ .++ -||
T Consensus 80 asaahdfdvryldihkhgreiarllek--iqk-------------yf------------------Q~I-----Etl---- 117 (294)
T 3caz_A 80 ASAAHDFDVRYLDIHKHGREIARLLEK--IQK-------------YR------------------QEI-----EEI---- 117 (294)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHH--HHH-------------HH------------------HHH-----HHH----
T ss_pred cccccccchhhhhHHhhhHHHHHHHHH--HHH-------------HH------------------HHH-----HHH----
Confidence 356778888999999999999999993 110 00 011 233
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHH
Q 006642 325 MWERKLYDEVKAEEKLRILYARKYKQMKSLDDKGAET--LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQI 402 (637)
Q Consensus 325 aWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~~g~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL 402 (637)
-.+.+.-..+|..||----.+..|+.+..++ |.+.+.-+++-.|-+.- -+
T Consensus 118 ------K~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkq----------------------vc 169 (294)
T 3caz_A 118 ------KKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSS----------------------VC 169 (294)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH----------------------HH
T ss_pred ------HHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHH----------------------HH
Confidence 2355678899999998877888888866666 77666666665555431 24
Q ss_pred HHHHHHHHHHHHHH
Q 006642 403 NDLVHRLLIMWKAM 416 (637)
Q Consensus 403 ~eLi~GL~~MWk~M 416 (637)
.+||+.|-..|+.-
T Consensus 170 sDiInkMnkll~n~ 183 (294)
T 3caz_A 170 ADLIQKMETVWKKH 183 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777654
No 10
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=47.14 E-value=2.2e+02 Score=27.98 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=27.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhhhc--------Ccch--HHHHHHHHHHHHH
Q 006642 329 KLYDEVKAEEKLRILYARKYKQMKSLDDK--------GAET--LEAARTMLRALST 374 (637)
Q Consensus 329 KLY~EVKa~E~~r~~yekK~~~Lr~~d~~--------g~~~--idkTra~vk~L~t 374 (637)
.|-+=++.-++.|..|+.+|+.+.....+ +... ++|++.-......
T Consensus 131 ~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~ 186 (305)
T 2efl_A 131 HIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQ 186 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHH
Confidence 33344456778899999999888764331 1111 7777766544433
No 11
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=46.77 E-value=2.1e+02 Score=27.69 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=47.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhhhhcCc--ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHH
Q 006642 332 DEVKAEEKLRILYARKYKQMKSLDDKGA--ET-LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQINDLVHR 408 (637)
Q Consensus 332 ~EVKa~E~~r~~yekK~~~Lr~~d~~g~--~~-idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~G 408 (637)
+-+|-.+.-++.||+.-..|+++..++. +. +-++...++.....+.-.-.-+-.---.+..+|-+-+-|.|..++..
T Consensus 148 ~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~ 227 (251)
T 2fic_A 148 SRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGL 227 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999987777777665553 22 55544444433333332222222222335555666677777777777
Q ss_pred HHHHHHHHHH
Q 006642 409 LLIMWKAMLE 418 (637)
Q Consensus 409 L~~MWk~M~e 418 (637)
-....+.|.+
T Consensus 228 Q~~f~~~~~~ 237 (251)
T 2fic_A 228 EENFHKEMSK 237 (251)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 12
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=41.81 E-value=2.5e+02 Score=27.56 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=17.0
Q ss_pred HhhhHHHHHHHHHHHHHHhhhhh
Q 006642 334 VKAEEKLRILYARKYKQMKSLDD 356 (637)
Q Consensus 334 VKa~E~~r~~yekK~~~Lr~~d~ 356 (637)
++.-++.|..|++.|+.+.+...
T Consensus 129 ~~~l~KaKk~Y~~~~~e~e~a~~ 151 (301)
T 2efk_A 129 FKQLENSKRKFERDCREAEKAAQ 151 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888999999988765543
No 13
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=39.60 E-value=83 Score=30.70 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccchhhHHHH
Q 006642 336 AEEKLRILYARKYKQMKSLDDKGAET-LEAARTMLRALSTKIQIAFHVIDKMSISMNKL-RDEELWPQIND 404 (637)
Q Consensus 336 a~E~~r~~yekK~~~Lr~~d~~g~~~-idkTra~vk~L~tri~Vaiq~vdsis~~I~kL-RDeEL~PQL~e 404 (637)
+..+++-.|+||-++...+..+-... .-++| .+.|.+|=.+--...+.+-.++.++ .|.+-|+.|+.
T Consensus 54 ~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR--~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~ 122 (233)
T 4efa_E 54 ETNNIDGNFKSKLKKAMLSQQITKSTIANKMR--LKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQ 122 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 45567778888877766555433322 34444 4557777777777778888888888 47788887755
No 14
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=39.52 E-value=1.6e+02 Score=31.07 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhcCc--c--h-HHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhccccc---chh
Q 006642 335 KAEEKLRILYARKYKQMKSLDDKGA--E--T-LEAARTMLRA-------LSTKIQIAFHVIDKMSISMNKLRDE---ELW 399 (637)
Q Consensus 335 Ka~E~~r~~yekK~~~Lr~~d~~g~--~--~-idkTra~vk~-------L~tri~Vaiq~vdsis~~I~kLRDe---EL~ 399 (637)
+.-++.+..|++.|+.......+-. + . ++|++.-... .+..+..++++. |+.++. +.+
T Consensus 134 ~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~-------N~~~~~yy~~~l 206 (406)
T 4dyl_A 134 QDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAA-------QLHHQHHHQLLL 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Confidence 5667889999999988765543211 1 2 4555444443 344555554443 333333 667
Q ss_pred hHHHHHHHH
Q 006642 400 PQINDLVHR 408 (637)
Q Consensus 400 PQL~eLi~G 408 (637)
|++++-+|.
T Consensus 207 p~~~d~lQ~ 215 (406)
T 4dyl_A 207 PGLLRSLQD 215 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777664443
No 15
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=39.02 E-value=1.9e+02 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccch
Q 006642 362 LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEEL 398 (637)
Q Consensus 362 idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL 398 (637)
++.|+..|-++..||.-++..+..+-..=..+.+.|-
T Consensus 57 l~Et~~mipd~~~Rl~~a~~~L~~~l~~e~~~~~~ee 93 (108)
T 1h7c_A 57 LQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEE 93 (108)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHCGGGTTSHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhcccCCCcHH
Confidence 8999999999999999998888777653334444333
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.08 E-value=53 Score=31.84 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhhhhcCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhccccc
Q 006642 339 KLRILYARKYKQMKSLDDKGAET---LEAARTMLRALSTKIQIAFHVIDKMSI----------SMNKLRDE 396 (637)
Q Consensus 339 ~~r~~yekK~~~Lr~~d~~g~~~---idkTra~vk~L~tri~Vaiq~vdsis~----------~I~kLRDe 396 (637)
.+|-..+.=-..||.+++.+.|. .--|.+++.++++|+..+|....-.-. .|++||||
T Consensus 99 ~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE 169 (189)
T 2v71_A 99 QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677888999988887 778899999999999999876544433 45566665
No 17
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=33.69 E-value=2.3e+02 Score=24.70 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHH
Q 006642 362 LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEELWPQI 402 (637)
Q Consensus 362 idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL 402 (637)
++.|+..|-++..||.-++..+..+- ..+.+.|-|-.=
T Consensus 55 l~Et~~mipd~~~Rl~~a~~~L~~~l---~~~~~~ee~~~A 92 (106)
T 1qsd_A 55 LDDTKRLLPTLYEKIREFKEDLEQFL---KTYQGTEDVSDA 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HTCCSSSCCHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH---HhccCcHHHHHH
Confidence 89999999999999999888887776 455555444333
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.48 E-value=60 Score=28.93 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCcch---HHHHHHHHHHHHHHHHHHHHHHH
Q 006642 338 EKLRILYARKYKQMKSLDDKGAET---LEAARTMLRALSTKIQIAFHVID 384 (637)
Q Consensus 338 E~~r~~yekK~~~Lr~~d~~g~~~---idkTra~vk~L~tri~Vaiq~vd 384 (637)
..+|-..+.=-..||.+++.+.|. ---|-+++.++++|+..||....
T Consensus 45 ~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErna 94 (111)
T 2v66_B 45 SQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNA 94 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 457888888888999999999988 66788999999999999886543
No 19
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.17 E-value=24 Score=27.99 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.6
Q ss_pred HHHHHHHHhh----------hHHHHHHHHHHHHHHhhhhhcCc
Q 006642 327 ERKLYDEVKA----------EEKLRILYARKYKQMKSLDDKGA 359 (637)
Q Consensus 327 EKKLY~EVKa----------~E~~r~~yekK~~~Lr~~d~~g~ 359 (637)
|.+||+++++ .++.++.=|.=...||+|+.||-
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 8899999994 34555555677889999999984
No 20
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.47 E-value=2.4e+02 Score=24.79 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=42.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhhhcCcch-----HHHHHHHHHHHHHHHH
Q 006642 328 RKLYDEVKAEEKLRILYARKYKQMKSLDDKGAET-----LEAARTMLRALSTKIQ 377 (637)
Q Consensus 328 KKLY~EVKa~E~~r~~yekK~~~Lr~~d~~g~~~-----idkTra~vk~L~tri~ 377 (637)
|+|=+|+++-|.==+.=.+|.+.-.++-.++-|. +++=+++|..|++||.
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~Kia 92 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLG 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899998888888888888888887777765 8888999999999986
No 21
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=29.05 E-value=2.5e+02 Score=23.43 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcCcch-----HHHHHHHHHHHHHHHH
Q 006642 314 RNLTASLRKLCMWERKLYDEVKAEEKLRILYARKYKQMKSLDDKGAET-----LEAARTMLRALSTKIQ 377 (637)
Q Consensus 314 gshssTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~~g~~~-----idkTra~vk~L~tri~ 377 (637)
|||=++|+ +|=+|++.-|.==..=.+|.+.-.++-.++-|. ++.=+++|..|++||.
T Consensus 1 ~~~M~~l~-------eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~ 62 (78)
T 2ic6_A 1 GSHMSTLK-------EVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLG 62 (78)
T ss_dssp ----CHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555664 567888888887777888888888887777665 8888999999999986
No 22
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=28.98 E-value=53 Score=27.27 Aligned_cols=35 Identities=6% Similarity=0.095 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhH---HHHHHHHHH
Q 006642 376 IQIAFHVIDKMSISMNKLRDEELWPQ---INDLVHRLL 410 (637)
Q Consensus 376 i~Vaiq~vdsis~~I~kLRDeEL~PQ---L~eLi~GL~ 410 (637)
++||||+|++-.+++..+-|++--|- |..|+-|+-
T Consensus 8 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~fd 45 (85)
T 3rq9_A 8 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYD 45 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHhccccccCCCcchhHHHHhhhH
Confidence 67999999999999999999999998 666666653
No 23
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=28.46 E-value=4.7e+02 Score=26.30 Aligned_cols=44 Identities=11% Similarity=0.248 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 006642 508 PAVFVISHHWLQAMGMLPEKEVAEALQSFCSSINQLLEQHHVELQQMAM 556 (637)
Q Consensus 508 PpIf~lC~~W~~ald~lp~k~v~~aIk~f~~~v~~i~~qQ~eE~~qk~~ 556 (637)
|-.=.+...|...|+ ++..-+.-++..++..+.++.++.+++..
T Consensus 33 P~~~~l~~~l~~~le-----~lr~~L~Py~~el~~~~~~~~eelr~kL~ 76 (273)
T 3s84_A 33 PHANEVSQKIGDNLR-----ELQQRLEPYADQLRTQVNTQAEQLRRQLT 76 (273)
T ss_dssp GGHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455667778888876 67788888999999999999999998875
No 24
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=27.94 E-value=63 Score=27.56 Aligned_cols=34 Identities=6% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhH---HHHHHHHH
Q 006642 376 IQIAFHVIDKMSISMNKLRDEELWPQ---INDLVHRL 409 (637)
Q Consensus 376 i~Vaiq~vdsis~~I~kLRDeEL~PQ---L~eLi~GL 409 (637)
++||||+|++-.+++..+-|++--|- |..|+-|+
T Consensus 33 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~f 69 (102)
T 3stq_A 33 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGY 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHhccccccCCCcchhHHHhhhh
Confidence 67999999999999999999999998 56665554
No 25
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.87 E-value=2.8e+02 Score=24.27 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=57.2
Q ss_pred cccccchHHHHHHHHHHHHHHHH-HHh--hhHHHHHHHHHHHHHHhhhhhcCcch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 310 VLNSRNLTASLRKLCMWERKLYD-EVK--AEEKLRILYARKYKQMKSLDDKGAET-LEAARTMLRALSTKIQIAFHVIDK 385 (637)
Q Consensus 310 ~~~~gshssTLdkLyaWEKKLY~-EVK--a~E~~r~~yekK~~~Lr~~d~~g~~~-idkTra~vk~L~tri~Vaiq~vds 385 (637)
+..-.++++|||+=.++=+.=.+ |=- .+-.+|+.||=.|.. +.|+ .++.. ++|.|+.-..+..=|..+-=-+..
T Consensus 8 f~KLR~La~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV-~~LK-~dv~~~L~k~~~e~qe~~~FIKa~kvL~~r 85 (101)
T 4aj5_1 8 CGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEV-QTLK-DDINILLDKARLENQEGIDFIKATKVLMEK 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34456899999987776443322 111 234688999887754 3442 23344 999999888888888888777888
Q ss_pred HHhhhhcccc
Q 006642 386 MSISMNKLRD 395 (637)
Q Consensus 386 is~~I~kLRD 395 (637)
++.-|.+||.
T Consensus 86 ns~DI~~ire 95 (101)
T 4aj5_1 86 NSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8888888863
No 26
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=25.96 E-value=4.7e+02 Score=25.48 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHccCChHH
Q 006642 449 AAIKLKFELQNWYLNFSDWNEAQKGYVKALNGWLLKCLAHEPEEPPDGRATFSPGRIGAPAVFVISHHWLQAMGMLPEKE 528 (637)
Q Consensus 449 at~qLe~el~~W~~sF~~wI~aQk~YV~aLngWL~~cl~~~~~e~~~~~~~~SP~r~~aPpIf~lC~~W~~ald~lp~k~ 528 (637)
.-..+-.+|..| |..=...-++|.+.|..|-+++..... . +...|..+.+...|..-++.+ +.
T Consensus 25 ~g~~~~~el~~f---~~eRa~iE~eYak~L~kLa~~~~~~~~---~---------~~~~~~~~t~~~aw~~~~~~~--e~ 87 (305)
T 2efl_A 25 WGIDILEKYIKF---VKERTEIELSYAKQLRNLSKKYQPKKN---S---------KEEEEYKYTSCKAFISNLNEM--ND 87 (305)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSCC-------------------CTTSHHHHHHHHHHHHH--HH
T ss_pred HhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccc---c---------CccccccccHHHHHHHHHHHH--HH
Confidence 333344444443 455567789999999999999753210 0 111234567889998777664 33
Q ss_pred HHHHHHHHHHHH
Q 006642 529 VAEALQSFCSSI 540 (637)
Q Consensus 529 v~~aIk~f~~~v 540 (637)
+...-..|+..|
T Consensus 88 ~a~~h~~~a~~l 99 (305)
T 2efl_A 88 YAGQHEVISENM 99 (305)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444445555554
No 27
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=24.56 E-value=4.8e+02 Score=25.57 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=37.6
Q ss_pred HhhhHHHHHHHHHHHHHHhhhhhc--------Ccch--HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 006642 334 VKAEEKLRILYARKYKQMKSLDDK--------GAET--LEAA-------RTMLRALSTKIQIAFHVIDKMSISMNKLRDE 396 (637)
Q Consensus 334 VKa~E~~r~~yekK~~~Lr~~d~~--------g~~~--idkT-------ra~vk~L~tri~Vaiq~vdsis~~I~kLRDe 396 (637)
++.-++.|..|++.|+..+....+ +... ++|. ...+......+..+++..+.+-.. . +
T Consensus 134 ~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~---~--~ 208 (290)
T 3i2w_A 134 LAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSV---Y--I 208 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHH---H--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---H--H
Confidence 345678889999999875544211 1111 3333 334555556666666666655332 1 5
Q ss_pred chhhHHHHHHHHH
Q 006642 397 ELWPQINDLVHRL 409 (637)
Q Consensus 397 EL~PQL~eLi~GL 409 (637)
+.+|++++-+|.|
T Consensus 209 ~~~p~~~~~~Q~l 221 (290)
T 3i2w_A 209 EDMTSVFEKCQTF 221 (290)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667766655554
No 28
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.38 E-value=98 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 006642 561 VDRKLKILEREEKKMQKAMQER 582 (637)
Q Consensus 561 lekk~~~le~~~~~~~~~~~~~ 582 (637)
|+||+..||.+.+-+.++++++
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776655444444433
No 29
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=24.35 E-value=5.7e+02 Score=25.90 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh-----cC---cch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cchhhHH
Q 006642 335 KAEEKLRILYARKYKQMKSLDD-----KG---AET--LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRD--EELWPQI 402 (637)
Q Consensus 335 Ka~E~~r~~yekK~~~Lr~~d~-----~g---~~~--idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRD--eEL~PQL 402 (637)
+.-++.|..|+++|+.+..... ++ ... ++|.+.-+.++...+.-+-..-.......+++|. ++.+|++
T Consensus 157 ~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~ 236 (350)
T 3aco_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQV 236 (350)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788899999988765543 11 111 6665555555444433333222223333333432 2335555
Q ss_pred HHHHHH
Q 006642 403 NDLVHR 408 (637)
Q Consensus 403 ~eLi~G 408 (637)
++.+|.
T Consensus 237 ~~~~Q~ 242 (350)
T 3aco_A 237 FEQCQQ 242 (350)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.82 E-value=1.1e+02 Score=25.19 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 006642 537 CSSINQLLEQHHVELQQMAMGRRDVDRKLKILEREEKKMQK 577 (637)
Q Consensus 537 ~~~v~~i~~qQ~eE~~qk~~~~kelekk~~~le~~~~~~~~ 577 (637)
+-.+..++.+-.+|.++|...-+++++++...+..-+..+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655556666665555544333333
No 31
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=23.71 E-value=35 Score=27.23 Aligned_cols=37 Identities=16% Similarity=0.464 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccccchh
Q 006642 362 LEAARTMLRALSTKIQIAFHVIDKMSISMNK---LRDEELW 399 (637)
Q Consensus 362 idkTra~vk~L~tri~Vaiq~vdsis~~I~k---LRDeEL~ 399 (637)
++|+...++.|. ||.|-||.+++..--|.+ +-++||-
T Consensus 3 MEkv~~vl~ELe-RlkveiQRLE~ml~p~~~~e~v~eeEl~ 42 (67)
T 1wmi_B 3 MEKVGDVLKELE-RLKVEIQRLEAMLMPEERDEDITEEEIA 42 (67)
T ss_dssp ----CHHHHHHH-HHHHHHHHHHHHTSCBCCCTTCCHHHHH
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 466777777765 899999999999887766 6677764
No 32
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.60 E-value=6e+02 Score=25.14 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh-----cCc-----------ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 006642 335 KAEEKLRILYARKYKQMKSLDD-----KGA-----------ET-LEAARTMLRALSTKIQIAFHVIDKMSISMNKLRDEE 397 (637)
Q Consensus 335 Ka~E~~r~~yekK~~~Lr~~d~-----~g~-----------~~-idkTra~vk~L~tri~Vaiq~vdsis~~I~kLRDeE 397 (637)
+.-++.|..|+++|+.+..... ++. .. ++|++..+......+..+++..+.+-..- ++
T Consensus 157 ~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~-----~~ 231 (312)
T 3abh_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQY-----ME 231 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HH
Confidence 4557889999999988766543 110 11 45566667777788888888887764332 35
Q ss_pred hhhHHHHHHHHH
Q 006642 398 LWPQINDLVHRL 409 (637)
Q Consensus 398 L~PQL~eLi~GL 409 (637)
.+|++++-++.|
T Consensus 232 ~~~~~~~~~Q~l 243 (312)
T 3abh_A 232 NMEQVFEQCQQF 243 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 577776666554
No 33
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.13 E-value=2.5e+02 Score=23.99 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006642 561 VDRKLKILEREEKKMQKAMQEREKKMTSLAREWNKITSTGSLHSGLKQSFMAIERFAANSEQAYDELHLR 630 (637)
Q Consensus 561 lekk~~~le~~~~~~~~~~~~~~kk~~~~~~~~~~~t~l~~Lq~~L~~vF~aL~~Fs~~s~~~ye~l~~~ 630 (637)
|.+.+..+|...+.....|+++++.+...... ..+| .-.|...|..+-+.....|+.....+++|...
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~-~~~T-pq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANN-SHIT-PQDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-TTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665566667788888776544221 1333 44555555566566666666666666655443
Done!