BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006644
(637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RNO|A Chain A, Solution Structure Of The N-Terminal Sap Domain Of Sumo E3
Ligases From Oryza Sativa
Length = 110
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 17/102 (16%)
Query: 3 TDLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD------------- 49
DLV+S K KL FR+KELKD+L +LGLPKQGKKQDL+DR+ L+D
Sbjct: 7 ADLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKN 66
Query: 50 ----EGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVE 87
E VA+I+DDTYRKMQI A DLA SG D +E
Sbjct: 67 SLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIE 108
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 107/247 (43%), Gaps = 33/247 (13%)
Query: 189 AEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGT 248
+ L A + Q Y + CI +N K+ P +A NG+ RPG
Sbjct: 79 VQVQLRLCLAETSCPQEDNYP-NSLCIKVNGKL---FPLPGYAPPPKNGI---EQKRPGR 131
Query: 249 QL-LGSNGRDDGALITLYIGEGVNQISLS-GCDI-RNFCFGVRLVKRQTVAQVLS-LVPK 304
L + S R A+ NQIS+S +I +N+ V LV++ T A +L L K
Sbjct: 132 PLNITSLVRLSSAV--------PNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMK 183
Query: 305 ETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKP 364
AL + + D D EI S+ V+L CP+ R+ + R
Sbjct: 184 GIRNPDHSRALIKEKL----------TADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVT 233
Query: 365 CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIE 424
C H CFD ++++N++ W CP+C K + E LI+D F I N D+ EI+
Sbjct: 234 CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL----NDCSDVDEIK 289
Query: 425 VKHDGSW 431
+ DGSW
Sbjct: 290 FQEDGSW 296
>pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The
E3 Sumo Ligase Siz1 From Rice
Length = 68
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 92 DSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCET 151
DS K+ C C +++ ++S IQC D RC V QH++CV+IP+KP E +PP+F+CE
Sbjct: 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAE-VPPVFYCEL 61
Query: 152 CRIKRAD 158
CR+ RAD
Sbjct: 62 CRLSRAD 68
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family
Protein Aam98074
Length = 78
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 90 AEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFC 149
ED K+ C CG SL ++S IQC DPRC V QH+ CVI+P+KPM+ LP F+C
Sbjct: 7 GEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYC 66
Query: 150 ETCRI 154
E CR+
Sbjct: 67 EICRL 71
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1
Length = 371
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 333 DSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICM 392
D ++ + S I++L+CP+S +R++ + C H CFD F+ + WQCP+C
Sbjct: 236 DEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQ 295
Query: 393 KNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSW 431
+ +LE+L I + + +++N ++ ++E+ DG W
Sbjct: 296 IDIALENLAISEF---VDDILQNCQKNVEQVELTSDGKW 331
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 554 TGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSA 595
TG T+G G TDI+ + SE++ +A S +S HPI +A
Sbjct: 21 TGTLTEGRFGVTDIVGFNHSEDELLQIAASLEARSEHPIAAA 62
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 554 TGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSA 595
TG T+G G TDI+ + SE++ +A S +S HPI +A
Sbjct: 21 TGTLTEGRFGVTDIVGFNHSEDELLQIAASLEARSEHPIAAA 62
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 349 CPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPIC 391
C G I+V GR PC H C+D L+++ CP C
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAI---LHEKKGDKMCPGC 43
>pdb|1HQX|A Chain A, R308k Arginase Variant
pdb|1HQX|B Chain B, R308k Arginase Variant
pdb|1HQX|C Chain C, R308k Arginase Variant
Length = 323
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 206 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 262
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 263 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 321
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 322 FGGVATGNEDGDSD 335
FG GN ++D
Sbjct: 304 FGTKKEGNHKPETD 317
>pdb|1RLA|A Chain A, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|B Chain B, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|C Chain C, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1D3V|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1D3V|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1HQ5|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L-Arginine Analogue
pdb|1HQ5|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L-Arginine Analogue
pdb|1HQF|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQH|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1R1O|A Chain A, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
pdb|1R1O|B Chain B, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
pdb|1R1O|C Chain C, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
Length = 323
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 206 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 262
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 263 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 321
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 322 FGGVATGNEDGDSD 335
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
>pdb|3E8Z|A Chain A, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
pdb|3E8Z|B Chain B, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
pdb|3E8Z|C Chain C, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
Length = 323
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 206 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 262
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 263 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 321
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 322 FGGVATGNEDGDSD 335
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,385,712
Number of Sequences: 62578
Number of extensions: 831786
Number of successful extensions: 1620
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 28
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)