Query 006644
Match_columns 637
No_of_seqs 241 out of 514
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 9.8E-56 3.3E-60 466.9 23.3 288 141-454 13-322 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 8.2E-53 2.8E-57 445.7 22.0 267 156-443 69-343 (371)
3 2rno_A Putative DNA-binding pr 99.9 3.5E-24 1.2E-28 186.2 8.1 85 4-89 8-109 (110)
4 1v66_A Protein inhibitor of ac 99.8 9.2E-22 3.2E-26 158.5 5.7 61 3-63 1-64 (65)
5 2rsd_A E3 SUMO-protein ligase 98.9 7.1E-10 2.4E-14 91.4 3.9 66 92-158 3-68 (68)
6 3htk_C E3 SUMO-protein ligase 98.7 4.4E-09 1.5E-13 107.5 4.0 77 335-413 170-248 (267)
7 1wew_A DNA-binding family prot 98.7 8E-09 2.7E-13 87.3 4.2 70 90-159 7-76 (78)
8 3o70_A PHD finger protein 13; 97.9 7.6E-06 2.6E-10 67.5 3.6 52 96-155 16-67 (68)
9 3o7a_A PHD finger protein 13 v 97.8 4.9E-06 1.7E-10 64.9 2.0 49 98-154 3-51 (52)
10 2lv9_A Histone-lysine N-methyl 97.8 1.5E-05 5.2E-10 70.0 4.2 52 97-156 26-77 (98)
11 1wee_A PHD finger family prote 97.7 1.5E-05 5.1E-10 66.1 2.9 52 97-155 14-66 (72)
12 1wem_A Death associated transc 97.6 4.1E-06 1.4E-10 70.1 -2.3 56 98-155 15-70 (76)
13 3kqi_A GRC5, PHD finger protei 97.5 1.6E-05 5.5E-10 66.5 0.9 54 97-156 8-62 (75)
14 1wep_A PHF8; structural genomi 97.5 2.5E-05 8.4E-10 65.9 1.8 54 97-156 10-64 (79)
15 2rnn_A E3 SUMO-protein ligase 97.5 0.00015 5.2E-09 65.3 6.9 47 5-51 29-75 (114)
16 1we9_A PHD finger family prote 97.5 5.9E-05 2E-09 60.8 3.1 53 98-156 5-59 (64)
17 2do1_A Nuclear protein HCC-1; 97.3 0.00015 5.3E-09 57.4 4.1 37 13-49 10-46 (55)
18 1zrj_A E1B-55KDA-associated pr 97.3 0.00021 7.2E-09 55.6 4.7 38 13-50 10-47 (50)
19 1weu_A Inhibitor of growth fam 97.3 0.00029 9.8E-09 61.3 5.9 55 94-156 31-86 (91)
20 2yu4_A E3 SUMO-protein ligase 97.3 0.00025 8.7E-09 61.2 4.9 70 344-415 5-81 (94)
21 2kvu_A MKL/myocardin-like prot 97.1 0.0003 1E-08 59.0 3.7 39 12-50 25-63 (75)
22 1h1j_S THO1 protein; SAP domai 97.1 0.00053 1.8E-08 53.5 4.7 36 13-48 5-40 (51)
23 2kr4_A Ubiquitin conjugation f 97.0 0.00046 1.6E-08 58.6 3.7 66 343-413 11-76 (85)
24 1jjr_A KU70, thyroid autoantig 96.8 0.00066 2.2E-08 64.1 4.0 40 11-50 59-98 (151)
25 2g6q_A Inhibitor of growth pro 96.8 0.00034 1.2E-08 56.6 1.6 53 96-156 8-61 (62)
26 1wen_A Inhibitor of growth fam 96.8 0.0013 4.3E-08 54.6 4.9 53 96-156 13-66 (71)
27 3c6w_A P28ING5, inhibitor of g 96.8 0.00041 1.4E-08 55.5 1.6 51 97-155 7-58 (59)
28 1wgm_A Ubiquitin conjugation f 96.6 0.002 6.8E-08 56.3 5.0 66 343-413 19-85 (98)
29 1x4i_A Inhibitor of growth pro 96.6 0.00074 2.5E-08 55.9 2.1 52 96-155 3-55 (70)
30 2k16_A Transcription initiatio 96.6 0.0009 3.1E-08 55.5 2.5 51 98-155 17-68 (75)
31 2bay_A PRE-mRNA splicing facto 96.6 0.0007 2.4E-08 54.3 1.7 54 345-402 2-55 (61)
32 2vnf_A ING 4, P29ING4, inhibit 96.5 0.00076 2.6E-08 54.1 1.5 51 97-155 8-59 (60)
33 3kv5_D JMJC domain-containing 96.4 0.00055 1.9E-08 75.8 0.2 54 96-155 34-88 (488)
34 2kre_A Ubiquitin conjugation f 96.4 0.0027 9.1E-08 55.7 4.5 67 343-414 26-92 (100)
35 3ztg_A E3 ubiquitin-protein li 96.3 0.0045 1.5E-07 52.3 5.5 67 346-415 13-81 (92)
36 2kgg_A Histone demethylase jar 96.3 0.00058 2E-08 53.1 -0.1 47 101-153 5-52 (52)
37 2ri7_A Nucleosome-remodeling f 96.3 0.00049 1.7E-08 65.6 -1.0 53 97-155 6-59 (174)
38 1t1h_A Gspef-atpub14, armadill 96.2 0.003 1E-07 51.7 3.5 65 346-414 8-72 (78)
39 3kv4_A PHD finger protein 8; e 96.1 0.00053 1.8E-08 75.1 -2.0 53 98-156 4-57 (447)
40 2f42_A STIP1 homology and U-bo 96.0 0.0058 2E-07 59.2 5.1 66 344-413 104-169 (179)
41 2jmi_A Protein YNG1, ING1 homo 95.9 0.0046 1.6E-07 53.6 3.2 50 96-153 23-74 (90)
42 2c2l_A CHIP, carboxy terminus 95.2 0.013 4.4E-07 58.4 4.4 65 345-413 207-271 (281)
43 2y43_A E3 ubiquitin-protein li 95.2 0.022 7.5E-07 48.8 5.2 67 344-415 20-87 (99)
44 3lrq_A E3 ubiquitin-protein li 95.2 0.011 3.6E-07 51.3 3.1 69 343-415 19-88 (100)
45 2ckl_B Ubiquitin ligase protei 95.1 0.011 3.7E-07 55.5 3.3 70 342-415 50-121 (165)
46 1jm7_B BARD1, BRCA1-associated 94.9 0.021 7.2E-07 50.6 4.3 64 345-415 21-85 (117)
47 3fl2_A E3 ubiquitin-protein li 94.8 0.024 8.3E-07 50.6 4.5 65 344-413 50-116 (124)
48 3lqh_A Histone-lysine N-methyl 94.5 0.0051 1.8E-07 59.8 -0.7 54 101-156 4-64 (183)
49 2ckl_A Polycomb group ring fin 94.5 0.044 1.5E-06 47.7 5.3 67 343-414 12-83 (108)
50 1z6u_A NP95-like ring finger p 94.3 0.045 1.5E-06 51.0 5.2 66 344-414 76-143 (150)
51 3hct_A TNF receptor-associated 94.0 0.033 1.1E-06 49.4 3.5 67 342-413 14-81 (118)
52 1jm7_A BRCA1, breast cancer ty 94.0 0.029 9.8E-07 48.7 3.0 56 346-404 21-77 (112)
53 2ecw_A Tripartite motif-contai 93.7 0.012 4.1E-07 48.2 -0.0 62 344-406 17-80 (85)
54 2xb1_A Pygopus homolog 2, B-ce 93.6 0.01 3.5E-07 52.6 -0.5 52 103-156 8-62 (105)
55 2ecy_A TNF receptor-associated 93.3 0.062 2.1E-06 42.5 3.6 52 344-400 13-65 (66)
56 2djb_A Polycomb group ring fin 92.1 0.091 3.1E-06 42.3 3.1 53 344-401 13-66 (72)
57 2ysl_A Tripartite motif-contai 91.8 0.12 4E-06 41.4 3.5 56 343-401 17-73 (73)
58 2ecv_A Tripartite motif-contai 91.5 0.17 6E-06 41.1 4.3 63 343-406 16-80 (85)
59 2yur_A Retinoblastoma-binding 91.4 0.1 3.5E-06 42.3 2.8 51 344-397 13-64 (74)
60 3hcs_A TNF receptor-associated 91.4 0.12 4.1E-06 48.5 3.6 68 341-413 13-81 (170)
61 2csy_A Zinc finger protein 183 90.9 0.24 8.4E-06 40.6 4.6 57 345-408 14-71 (81)
62 2vpb_A Hpygo1, pygopus homolog 90.6 0.024 8.1E-07 46.1 -1.9 49 103-153 13-64 (65)
63 3l11_A E3 ubiquitin-protein li 90.3 0.13 4.5E-06 45.0 2.6 64 346-413 15-85 (115)
64 3pur_A Lysine-specific demethy 90.0 0.081 2.8E-06 58.9 1.1 40 110-155 55-94 (528)
65 1rmd_A RAG1; V(D)J recombinati 89.7 0.2 6.7E-06 44.0 3.2 65 344-413 21-87 (116)
66 2egp_A Tripartite motif-contai 89.4 0.019 6.6E-07 46.7 -3.4 57 346-405 12-73 (79)
67 2jx3_A Protein DEK; alpha heli 88.5 0.46 1.6E-05 43.8 4.8 46 6-51 65-110 (131)
68 1f62_A Transcription factor WS 88.4 0.28 9.7E-06 37.3 2.9 45 103-154 5-49 (51)
69 2ku3_A Bromodomain-containing 88.0 0.14 4.9E-06 42.2 1.0 48 103-159 21-70 (71)
70 1g25_A CDK-activating kinase a 86.9 0.57 2E-05 36.6 3.9 52 347-402 4-60 (65)
71 4ayc_A E3 ubiquitin-protein li 86.6 0.25 8.4E-06 45.0 1.9 59 346-410 53-114 (138)
72 2l43_A N-teminal domain from h 85.3 0.21 7.1E-06 42.8 0.6 51 103-162 30-82 (88)
73 3knv_A TNF receptor-associated 85.3 0.11 3.9E-06 47.8 -1.1 72 337-413 22-103 (141)
74 2xeu_A Ring finger protein 4; 85.2 0.39 1.3E-05 37.0 2.1 50 347-401 4-60 (64)
75 2ect_A Ring finger protein 126 85.1 0.7 2.4E-05 37.3 3.7 51 346-401 15-68 (78)
76 2e6r_A Jumonji/ARID domain-con 84.9 0.47 1.6E-05 40.9 2.7 50 99-155 16-66 (92)
77 3rsn_A SET1/ASH2 histone methy 84.7 0.52 1.8E-05 45.5 3.2 54 98-154 4-58 (177)
78 3ng2_A RNF4, snurf, ring finge 84.4 0.47 1.6E-05 37.4 2.3 50 347-401 11-67 (71)
79 2l5u_A Chromodomain-helicase-D 83.7 0.83 2.8E-05 36.3 3.5 49 97-155 9-58 (61)
80 2ct2_A Tripartite motif protei 83.5 0.82 2.8E-05 37.5 3.5 51 346-399 15-70 (88)
81 2lri_C Autoimmune regulator; Z 83.5 0.9 3.1E-05 36.9 3.6 46 100-155 13-59 (66)
82 1chc_A Equine herpes virus-1 r 83.4 0.68 2.3E-05 36.3 2.9 46 346-396 5-51 (68)
83 1xwh_A Autoimmune regulator; P 82.8 0.98 3.3E-05 36.3 3.6 47 100-156 9-56 (66)
84 2ku7_A MLL1 PHD3-CYP33 RRM chi 82.3 0.15 5.1E-06 45.3 -1.6 41 112-154 1-43 (140)
85 2d8t_A Dactylidin, ring finger 80.6 0.32 1.1E-05 38.9 -0.1 48 346-398 15-62 (71)
86 1bor_A Transcription factor PM 79.7 1 3.5E-05 34.5 2.6 45 346-398 6-50 (56)
87 2ysj_A Tripartite motif-contai 79.3 1.1 3.6E-05 34.7 2.6 47 342-391 16-63 (63)
88 2ecm_A Ring finger and CHY zin 79.1 1.4 4.8E-05 32.9 3.1 43 348-395 7-53 (55)
89 2yt5_A Metal-response element- 79.1 1.3 4.5E-05 35.2 3.1 49 103-155 11-61 (66)
90 1x4j_A Ring finger protein 38; 78.8 0.87 3E-05 36.6 2.0 46 347-397 24-72 (75)
91 3ask_A E3 ubiquitin-protein li 78.3 1.3 4.4E-05 44.3 3.5 46 103-154 179-224 (226)
92 2puy_A PHD finger protein 21A; 76.5 1.5 5.2E-05 34.4 2.8 43 103-155 10-52 (60)
93 2ecj_A Tripartite motif-contai 76.4 2.8 9.6E-05 31.4 4.2 45 344-391 13-58 (58)
94 3asl_A E3 ubiquitin-protein li 75.7 1.6 5.4E-05 35.7 2.7 46 103-154 23-68 (70)
95 2e6s_A E3 ubiquitin-protein li 75.5 2.3 8E-05 35.4 3.7 45 103-153 31-75 (77)
96 3shb_A E3 ubiquitin-protein li 75.4 1.5 5.1E-05 36.7 2.5 45 103-153 31-75 (77)
97 2ysm_A Myeloid/lymphoid or mix 74.9 1.8 6.3E-05 37.9 3.1 48 103-157 59-106 (111)
98 2yql_A PHD finger protein 21A; 74.8 1.8 6.2E-05 33.5 2.8 44 100-153 10-54 (56)
99 4ap4_A E3 ubiquitin ligase RNF 73.9 1.6 5.6E-05 38.1 2.6 51 346-401 7-64 (133)
100 1e4u_A Transcriptional repress 71.0 4.9 0.00017 33.2 4.7 52 346-400 11-65 (78)
101 2ea6_A Ring finger protein 4; 70.8 2.2 7.4E-05 33.1 2.4 46 346-396 15-67 (69)
102 2ep4_A Ring finger protein 24; 68.1 3.1 0.00011 33.1 2.8 46 346-396 15-63 (74)
103 4gne_A Histone-lysine N-methyl 67.7 3.2 0.00011 36.8 3.0 44 100-153 16-60 (107)
104 1mm2_A MI2-beta; PHD, zinc fin 65.9 6.7 0.00023 30.9 4.3 45 101-155 11-56 (61)
105 1iym_A EL5; ring-H2 finger, ub 65.1 5.9 0.0002 29.4 3.7 44 348-396 7-54 (55)
106 2kiz_A E3 ubiquitin-protein li 64.6 4.3 0.00015 31.7 3.0 47 346-397 14-63 (69)
107 1v87_A Deltex protein 2; ring- 64.0 3.3 0.00011 35.8 2.3 48 348-395 27-92 (114)
108 2kwj_A Zinc finger protein DPF 63.3 4 0.00014 36.1 2.8 46 103-155 63-108 (114)
109 2ecg_A Baculoviral IAP repeat- 62.9 3.4 0.00012 33.3 2.1 45 344-397 23-68 (75)
110 4ic3_A E3 ubiquitin-protein li 62.8 1.8 6.3E-05 35.0 0.4 42 346-396 24-66 (74)
111 2vje_B MDM4 protein; proto-onc 55.9 3.8 0.00013 32.2 1.2 44 348-395 9-54 (63)
112 1kcf_A Hypothetical 30.2 KD pr 55.9 8 0.00027 39.3 3.9 33 14-46 2-34 (258)
113 2do5_A Splicing factor 3B subu 55.8 12 0.00041 29.0 3.9 30 17-46 12-41 (58)
114 3v43_A Histone acetyltransfera 55.2 9.3 0.00032 33.6 3.7 45 103-154 66-111 (112)
115 2ecl_A Ring-box protein 2; RNF 54.2 4.8 0.00016 33.1 1.6 32 364-400 47-79 (81)
116 4bbq_A Lysine-specific demethy 53.5 6.8 0.00023 34.4 2.5 40 111-154 73-113 (117)
117 2vje_A E3 ubiquitin-protein li 53.1 5.9 0.0002 31.2 1.9 45 348-396 10-56 (64)
118 4ap4_A E3 ubiquitin ligase RNF 52.7 3.9 0.00013 35.6 0.8 50 347-401 73-129 (133)
119 2riq_A Poly [ADP-ribose] polym 51.3 20 0.00069 33.9 5.5 45 3-47 28-73 (160)
120 3o36_A Transcription intermedi 50.6 12 0.0004 35.5 3.9 44 103-156 9-52 (184)
121 2ecn_A Ring finger protein 141 49.5 2.2 7.6E-05 33.5 -1.2 47 346-398 15-61 (70)
122 1a62_A RHO; transcription term 49.4 16 0.00056 33.2 4.4 35 12-46 5-41 (130)
123 3u5n_A E3 ubiquitin-protein li 47.9 8.8 0.0003 37.2 2.6 44 103-156 12-55 (207)
124 3t6p_A Baculoviral IAP repeat- 47.5 5.4 0.00018 42.1 1.0 44 344-396 293-337 (345)
125 2ysm_A Myeloid/lymphoid or mix 47.1 16 0.00055 31.7 3.9 44 103-153 12-55 (111)
126 2l0b_A E3 ubiquitin-protein li 46.1 9.9 0.00034 31.7 2.3 47 346-397 40-89 (91)
127 1wev_A Riken cDNA 1110020M19; 45.2 13 0.00043 31.5 2.8 51 103-156 21-73 (88)
128 2yho_A E3 ubiquitin-protein li 44.7 5.4 0.00018 32.8 0.4 41 347-396 19-60 (79)
129 2ea5_A Cell growth regulator w 44.2 13 0.00044 29.6 2.6 41 347-396 16-57 (68)
130 2kqs_B Death domain-associated 44.0 7.5 0.00026 26.1 0.9 16 561-576 9-24 (26)
131 1fp0_A KAP-1 corepressor; PHD 41.2 26 0.00089 30.0 4.2 45 101-155 27-72 (88)
132 2yrc_A Protein transport prote 41.0 2.9 0.0001 33.3 -1.7 15 380-394 28-42 (59)
133 1y02_A CARP2, FYVE-ring finger 40.8 39 0.0013 30.4 5.5 38 10-47 73-112 (120)
134 2ro1_A Transcription intermedi 40.7 19 0.00065 34.6 3.6 39 110-155 11-49 (189)
135 6rxn_A Rubredoxin; electron tr 39.8 8.3 0.00029 29.2 0.7 12 383-394 28-39 (46)
136 2j9u_B VPS36, vacuolar protein 36.3 9.4 0.00032 31.9 0.6 10 383-392 15-24 (76)
137 2y1n_A E3 ubiquitin-protein li 34.5 14 0.00047 39.8 1.6 49 346-399 332-381 (389)
138 2k5c_A Uncharacterized protein 33.3 4.7 0.00016 34.3 -1.7 16 386-401 9-24 (95)
139 4rxn_A Rubredoxin; electron tr 31.9 13 0.00045 29.1 0.7 12 383-394 34-45 (54)
140 1zbh_A 3'-5' exonuclease ERI1; 31.0 59 0.002 33.0 5.7 42 6-47 19-60 (299)
141 1yk4_A Rubredoxin, RD; electro 30.6 14 0.00049 28.5 0.7 12 383-394 33-44 (52)
142 2v3b_B Rubredoxin 2, rubredoxi 30.5 16 0.00054 28.6 1.0 12 383-394 34-45 (55)
143 1e8j_A Rubredoxin; iron-sulfur 30.3 16 0.00056 28.2 1.0 12 383-394 34-45 (52)
144 1wim_A KIAA0161 protein; ring 28.9 10 0.00034 31.8 -0.5 53 346-398 5-67 (94)
145 2kn9_A Rubredoxin; metalloprot 28.2 18 0.00061 30.6 1.0 12 383-394 58-69 (81)
146 1dx8_A Rubredoxin; electron tr 28.1 16 0.00056 29.9 0.7 12 383-394 38-49 (70)
147 3vk6_A E3 ubiquitin-protein li 27.7 21 0.00072 31.4 1.4 45 348-395 3-47 (101)
148 1s24_A Rubredoxin 2; electron 23.7 24 0.00083 30.2 1.0 12 383-394 66-77 (87)
149 2m0e_A Zinc finger and BTB dom 22.4 36 0.0012 20.2 1.4 13 385-397 2-14 (29)
150 1p7a_A BF3, BKLF, kruppel-like 21.2 38 0.0013 21.9 1.4 14 384-397 10-23 (37)
151 3dpl_R Ring-box protein 1; ubi 21.2 40 0.0014 29.3 1.9 31 363-397 71-101 (106)
152 2pv9_C Proteinase-activated re 20.8 29 0.001 23.2 0.7 13 618-630 6-18 (26)
153 2jvx_A NF-kappa-B essential mo 20.7 28 0.00094 23.8 0.6 12 384-395 2-13 (28)
154 1ard_A Yeast transcription fac 20.1 39 0.0013 20.1 1.2 13 385-397 2-14 (29)
155 1klr_A Zinc finger Y-chromosom 20.1 43 0.0015 20.0 1.4 13 385-397 2-14 (30)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=9.8e-56 Score=466.94 Aligned_cols=288 Identities=26% Similarity=0.407 Sum_probs=211.8
Q ss_pred cCCCCcccccccccccCCchhHhhhhhcCceeeeeccccCCCCCCCceEEEEEEeCHhhHHhhcCC---------CceEE
Q 006644 141 RLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT---------EYDVQ 211 (637)
Q Consensus 141 p~~p~~f~C~~CRL~~~dPF~~~i~~lL~Pv~L~~s~i~~~g~~~~Qs~~~~F~Lt~~q~~~L~~~---------~~~lq 211 (637)
+.||++. |+ .+|||+++++|++|+.|.++ ++.++|+..+.|.||++|...++.+ +|.+|
T Consensus 13 ~~~~~~~------~k-~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vq 80 (360)
T 4fo9_A 13 NLYFQGQ------LK-NLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQ 80 (360)
T ss_dssp ----CCC------BC-CCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEE
T ss_pred ccCCCce------ec-CCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEE
Confidence 6688885 44 68999999999999999865 3467899999999999999888642 35555
Q ss_pred E---EEEecCCCccccccCCCceEEEECCeEeeecCCCCcccCCC-CCCCCCCc-cccccCCc---ccEEEEEEe-c-cc
Q 006644 212 A---WCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGS-NGRDDGAL-ITLYIGEG---VNQISLSGC-D-IR 281 (637)
Q Consensus 212 v---~Ci~l~d~~~~~~~wP~~~~I~VNg~~v~~~~RP~~~~~g~-~gR~~~p~-IT~~lk~g---~N~I~Is~~-d-~~ 281 (637)
| +|.. ++..++++.||.+++|+|||+.|+....-..++.|. ++|...|+ ||++++.+ .|+|+|+|. + ++
T Consensus 81 vqlRfC~~-~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~ 159 (360)
T 4fo9_A 81 VQLRLCLA-ETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGK 159 (360)
T ss_dssp EEEEEEEC--C-CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTB
T ss_pred EEEEEEEc-cCCCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCc
Confidence 5 4655 567788999999999999999999642101122232 35555565 99999987 599999996 3 68
Q ss_pred eEEEEEEEEeecCHHHHHHhccccCCCCcHHHHHHHHHHhhCCccCCCCCCCCCcceeeeceEEeecCCCCccccccccC
Q 006644 282 NFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGR 361 (637)
Q Consensus 282 ~y~~~V~lVk~~t~e~Ll~~I~~~~~~~~~edal~rIkr~l~~~~~~~~dsDdD~EIv~~s~~vsL~CPls~~ri~~P~R 361 (637)
.|+++||+|+++|+++|+++|+++ ...+.++++++|++.+. .|+|.||+++++.|||+||||++||++|+|
T Consensus 160 ~y~l~V~lV~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~--------~d~DddI~~~~~~vSL~CPlS~~ri~~P~R 230 (360)
T 4fo9_A 160 NYSMSVYLVRQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLT--------ADPDSEIATTSLRVSLMCPLGKMRLTIPCR 230 (360)
T ss_dssp CEEEEEEEEEECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC-----------------CCEEEESBCTTTCSBCSSEEE
T ss_pred eEEEEEEEEEeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhc--------cCCccceeeeeeEEeeeCCCccceeccCCc
Confidence 999999999999999999999863 35677889999998874 233446889999999999999999999999
Q ss_pred CCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHHhcCCCCccEEEEccCCceEEeccCC---
Q 006644 362 FKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGE--- 438 (637)
Q Consensus 362 g~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e--- 438 (637)
|..|+|+|||||++||+|+++.++|+||||++.+.+++|+||+||++||+ ++ .++++|+|++||+|++...+.
T Consensus 231 g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~---~~-~~v~~I~v~~DGsW~p~~~k~e~~ 306 (360)
T 4fo9_A 231 AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN---DC-SDVDEIKFQEDGSWCPMRPKKEAM 306 (360)
T ss_dssp ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT---TC-SSCCEEEECC-CCEEC--------
T ss_pred CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH---hC-CCCCEEEECCCCceecCCCCcccc
Confidence 99999999999999999999999999999999999999999999999974 45 489999999999999753332
Q ss_pred CCCCccccCCCCCccc
Q 006644 439 NNNLAEWHSPDGSTYA 454 (637)
Q Consensus 439 ~~~~~~w~~p~g~~~~ 454 (637)
+....+|...||.-.+
T Consensus 307 ~~~~~~~~~~~~~~~~ 322 (360)
T 4fo9_A 307 KVSSQPCTKIESSSVL 322 (360)
T ss_dssp ----------------
T ss_pred cccCCCCCCccccccc
Confidence 2455577766765544
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-53 Score=445.69 Aligned_cols=267 Identities=22% Similarity=0.382 Sum_probs=214.3
Q ss_pred cCCchhHhhhhhcCceeeeeccccCCCCCCCceEEEEEEeCHhhHHhhcC--CCceEEEEEEecCCC---ccccccCCCc
Q 006644 156 RADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN--TEYDVQAWCILLNDK---VSFRMQWPLH 230 (637)
Q Consensus 156 ~~dPF~~~i~~lL~Pv~L~~s~i~~~g~~~~Qs~~~~F~Lt~~q~~~L~~--~~~~lqv~Ci~l~d~---~~~~~~wP~~ 230 (637)
+..|||+.+..+-....... . .+...++.+.|+|+++++++|++ ++|+|+|||+..++- ...+++||..
T Consensus 69 k~SPFY~i~~~i~~~~~~~~----~--~~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~ 142 (371)
T 3i2d_A 69 KESPFYKIQRLIPELVMNVE----V--TGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFP 142 (371)
T ss_dssp CCBTTEEEEEEEEEEEEEEC----C--EEEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSS
T ss_pred cCCCCceeeeecCCcccccc----c--cCCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCc
Confidence 57999975443322211111 1 11234678899999999999984 689999999998652 3467999999
Q ss_pred eEEEECCeEeeecCCCCcccCCCCCCCCCCccccccCCc--ccEEEEEEe-ccceEEEEEEEEeecCHHHHHHhccccCC
Q 006644 231 AELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEG--VNQISLSGC-DIRNFCFGVRLVKRQTVAQVLSLVPKETA 307 (637)
Q Consensus 231 ~~I~VNg~~v~~~~RP~~~~~g~~gR~~~p~IT~~lk~g--~N~I~Is~~-d~~~y~~~V~lVk~~t~e~Ll~~I~~~~~ 307 (637)
++|+|||..|+.+.|+. +.++|+..|++||.+++.+ .|+|+|+|. +.+.|+++||+|+++++++|++.|+++.
T Consensus 143 ~eI~VNg~~vk~n~rGl---Knk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~- 218 (371)
T 3i2d_A 143 NELRCNNVQIKDNIRGF---KSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHP- 218 (371)
T ss_dssp EEEEETTEECCSCCSSC---TTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSC-
T ss_pred eEEEECCEEeccccccC---CCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcC-
Confidence 99999999999866653 4567788888899999975 899999985 6789999999999999999999998753
Q ss_pred CCcHHHHHHHHHHhhCCccCCCCCCCCCcceeeeceEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccc
Q 006644 308 GEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQ 387 (637)
Q Consensus 308 ~~~~edal~rIkr~l~~~~~~~~dsDdD~EIv~~s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~ 387 (637)
.++.++++++|++.+.. |+|.||+++++.|||+||||++||++|+||..|+|+|||||++||+|+++.++|+
T Consensus 219 ~i~~e~tl~~Ik~~ls~--------d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~ 290 (371)
T 3i2d_A 219 KIIKQATLLYLKKTLRE--------DEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQ 290 (371)
T ss_dssp CBCHHHHHHHHHHHHHS--------CC------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCB
T ss_pred CCCHHHHHHHHHHHhcc--------CCCCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCcee
Confidence 46778899999988742 2334588899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCeeecHHHHHHHHHHhcCCCCccEEEEccCCceEEeccCCCCCCc
Q 006644 388 CPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLA 443 (637)
Q Consensus 388 CPiC~k~~~~~dL~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~~~~~ 443 (637)
||||++.+.+++|+||+||++|| +++++++++|+|++||+|+++.++++.+.+
T Consensus 291 CPIC~k~~~~~dL~ID~~~~~IL---~~~~~dve~V~v~~DGsW~p~~e~~~d~~~ 343 (371)
T 3i2d_A 291 CPVCQIDIALENLAISEFVDDIL---QNCQKNVEQVELTSDGKWTAILEDDDDSDS 343 (371)
T ss_dssp CTTTCCBCCGGGEEEBHHHHHHH---TTSCTTCCEEEEETTSCEEECC--------
T ss_pred CCCCCcccCHHHeeEcHHHHHHH---HhccCCccEEEECCCCCEEeccCCcCCCcc
Confidence 99999999999999999999996 566789999999999999999887775443
No 3
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=99.90 E-value=3.5e-24 Score=186.17 Aligned_cols=85 Identities=61% Similarity=0.878 Sum_probs=80.3
Q ss_pred hhHHHHHHHHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCchh-----------------HHHHHHHHHHHhhcc
Q 006644 4 DLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG-----------------VARIIDDTYRKMQIS 66 (637)
Q Consensus 4 ~~~~~~k~~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~~-----------------v~~kI~elYr~~~~~ 66 (637)
|++++||.+|.+|||+||+++|.+|||+|+||||+|++|+|++|++++ |++.|+|+||+||++
T Consensus 8 dl~~~Ck~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~~~~~~~K~~v~kE~vaKIVDDtYRKMqvS 87 (110)
T 2rno_A 8 DLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQ 87 (110)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTTSCCCSTTGGGSHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcccccccccccccHHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999999999865 789999999999999
Q ss_pred cchhhhhccCCCCcccccccccc
Q 006644 67 EAADLAIMGQSGLDICNVKVEME 89 (637)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~~~~~ 89 (637)
+++++|+++|.+++.+ ++++.|
T Consensus 88 gAtDLASk~q~~sd~s-~k~k~E 109 (110)
T 2rno_A 88 CAPDLATRSHSGSDFS-FRPIEE 109 (110)
T ss_dssp TCCCSCTTCSSCSSSC-SCCCTT
T ss_pred CCccccccCccccCcc-cccCCC
Confidence 9999999999999987 777655
No 4
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.84 E-value=9.2e-22 Score=158.55 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=57.1
Q ss_pred chhHHHHHHHHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCchh---HHHHHHHHHHHh
Q 006644 3 TDLVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---VARIIDDTYRKM 63 (637)
Q Consensus 3 ~~~~~~~k~~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~~---v~~kI~elYr~~ 63 (637)
|...+.+++||++|||+|||+||+++|+||+|||+||++|||+||+..+ |+.||+|||+++
T Consensus 1 ~~~~~el~~Mv~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s~~v~~KIrELy~~r 64 (65)
T 1v66_A 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRR 64 (65)
T ss_dssp CCCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999999999999887 899999999975
No 5
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.89 E-value=7.1e-10 Score=91.41 Aligned_cols=66 Identities=48% Similarity=1.025 Sum_probs=54.5
Q ss_pred cccCCCCcccccCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccccCC
Q 006644 92 DSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRAD 158 (637)
Q Consensus 92 ~~~~~~~~~rC~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~~d 158 (637)
++..+...++|+|+.....+.||+|....|+.|||..|+++..++... ...|+.|+|+.||+.++|
T Consensus 3 d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~-~~~p~~~~C~~Cr~~r~D 68 (68)
T 2rsd_A 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES-AEVPPVFYCELCRLSRAD 68 (68)
T ss_dssp SCCCSSCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC-CCCCSSCCCHHHHHHHTC
T ss_pred CCcCCCCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc-cCCCCcEECcCccCcccC
Confidence 345667889999999888889999997679999999999997765432 346789999999999876
No 6
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.73 E-value=4.4e-09 Score=107.47 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=69.2
Q ss_pred CcceeeeceEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCC--CCCCCCCCCeeecHHHHHHHHH
Q 006644 335 DLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPI--CMKNYSLEDLIIDPYFHRITTM 412 (637)
Q Consensus 335 D~EIv~~s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPi--C~k~~~~~dL~ID~y~~~IL~~ 412 (637)
|.||+++...++|+|||++..|+.||++..|.|. |+...+..+-+..+.|.||+ |.+.+...+|+.|..+.++++.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHs--FcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHV--FDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE--EEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCc--ccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 3457778899999999999999999999999996 99999999887778899999 9999999999999999888765
Q ss_pred H
Q 006644 413 M 413 (637)
Q Consensus 413 l 413 (637)
.
T Consensus 248 ~ 248 (267)
T 3htk_C 248 A 248 (267)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.70 E-value=8e-09 Score=87.29 Aligned_cols=70 Identities=47% Similarity=0.951 Sum_probs=57.4
Q ss_pred cccccCCCCcccccCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccccCCc
Q 006644 90 AEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 159 (637)
Q Consensus 90 ~~~~~~~~~~~rC~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~~dP 159 (637)
..+...+....+|+|+.....+.||+|.++.|..|||..|+++..+++.+.+..+..|+|+.|+..+.+|
T Consensus 7 ~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 7 GEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred cccccCCCCCEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 3455566788999999987778999999666999999999999887654445678999999999877654
No 8
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.87 E-value=7.6e-06 Score=67.45 Aligned_cols=52 Identities=29% Similarity=0.724 Sum_probs=43.6
Q ss_pred CCCcccccCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 96 LGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 96 ~~~~~rC~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
+....+|+|+.......||+|.. |+.|+|..|+++... ..|+.|+|+.|+-.
T Consensus 16 ~~~~~~CiC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~~~------~~~~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKS------NVPEVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCSTTCCCCTTCCEEECTT--TCCEEETTTTTCCTT------SCCSSCCCHHHHTC
T ss_pred CCCceEeECCCcCCCCCEEECCC--CCccccccccCcCcc------cCCCcEECCCCCCC
Confidence 45678999998777778999998 999999999998754 24689999999853
No 9
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.84 E-value=4.9e-06 Score=64.87 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=41.0
Q ss_pred CcccccCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 006644 98 GKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 154 (637)
Q Consensus 98 ~~~rC~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL 154 (637)
...+|+|+.....+.||+|.. |+.|+|..|+++... ..|+.|+|+.|+-
T Consensus 3 d~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~~~------~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKS------NVPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCCGG------GCCSSCCCHHHHT
T ss_pred cCeEEEeCCcCCCCCEEEcCC--CCccccccccCCCcc------cCCCcEECcCCCC
Confidence 357899998777779999998 999999999998653 2468999999974
No 10
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.77 E-value=1.5e-05 Score=70.03 Aligned_cols=52 Identities=31% Similarity=0.662 Sum_probs=43.7
Q ss_pred CCcccccCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 97 GGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 97 ~~~~rC~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
...++|+|+..-..+.||+|.. |..|+|..|++++.. ..|+.|+|+.|+...
T Consensus 26 ~d~vrCiC~~~~~~~~mi~Cd~--C~~w~H~~C~~~~~~------~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 26 TDVTRCICGFTHDDGYMICCDK--CSVWQHIDCMGIDRQ------HIPDTYLCERCQPRN 77 (98)
T ss_dssp CCBCCCTTSCCSCSSCEEEBTT--TCBEEETTTTTCCTT------SCCSSBCCTTTSSSC
T ss_pred CCCEEeECCCccCCCcEEEcCC--CCCcCcCcCCCCCcc------CCCCCEECCCCcCCC
Confidence 3568999999888889999998 999999999988643 246789999998754
No 11
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.71 E-value=1.5e-05 Score=66.08 Aligned_cols=52 Identities=33% Similarity=0.615 Sum_probs=42.5
Q ss_pred CCcccccCCCCCCC-CCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 97 GGKIFCPCGTSLPS-ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 97 ~~~~rC~C~ssl~~-~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
....+|+|+..... ..||+|.. |..|+|..|+.+... +..|..|+|+.|+-.
T Consensus 14 ~~~~~C~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~-----~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNA-----DALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECCTTCCCSCCSSCEEECSS--SCEEEETTTTTCCTT-----SCCCSCCCCHHHHHH
T ss_pred CcceEeeCCCccCCCCcEEECCC--CCCccCCeeeccCcc-----ccCCCcEECCCccCC
Confidence 45689999987644 47999998 999999999998653 235789999999865
No 12
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.58 E-value=4.1e-06 Score=70.11 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=43.5
Q ss_pred CcccccCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 98 GKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 98 ~~~rC~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
...+|+|+.......||+|.. |+.|+|..|+++...++..+...+..|+|+.|+..
T Consensus 15 ~~~~C~C~~~~~~~~MI~Cd~--C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYCICRQPHNNRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCSTTCCCCCSSCEEECSS--SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEEECCCccCCCCEEEeCC--CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 358999998877778999998 99999999999865432212123689999999865
No 13
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.55 E-value=1.6e-05 Score=66.46 Aligned_cols=54 Identities=22% Similarity=0.476 Sum_probs=43.3
Q ss_pred CCcccccCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 97 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 97 ~~~~rC~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
....+|+|+.... ...||+|.. |+.|+|..|+++...+++ ..+.|+|+.|+...
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~~----~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEAP----DIDIYHCPNCEKTH 62 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTGG----GBSSCCCHHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCC--CCCCEecccccccccccC----CCCEEECCCCcccC
Confidence 4568999998654 578999998 999999999999765422 24789999999753
No 14
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.53 E-value=2.5e-05 Score=65.90 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=43.6
Q ss_pred CCcccccCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 97 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 97 ~~~~rC~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
....+|+|+.... .+.||+|.. |+.|+|..|+.+...++ ..++.|+|+.|+-..
T Consensus 10 ~~~~~C~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENA----VDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCSTTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHH----TTCSBBCCTTTTTTS
T ss_pred CCccEEEcCCccCCCCceEEcCC--CCCcEEeeecCcccccc----cCCCeEECCCccccc
Confidence 4568999998764 688999998 99999999999865321 236899999999764
No 15
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00015 Score=65.31 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=42.6
Q ss_pred hHHHHHHHHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCchh
Q 006644 5 LVASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG 51 (637)
Q Consensus 5 ~~~~~k~~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~~ 51 (637)
.+.+....|..++|.|||++|...||+-+|+|+||++|+.+.|+...
T Consensus 29 e~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 29 EVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 45677788999999999999999999999999999999999988644
No 16
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.45 E-value=5.9e-05 Score=60.81 Aligned_cols=53 Identities=28% Similarity=0.422 Sum_probs=42.3
Q ss_pred Ccccc-cCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 98 GKIFC-PCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 98 ~~~rC-~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
...+| +|+.... ...||+|.. |+.|+|..|+++...++ ..+..|+|+.|+-++
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARA----EHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGG----GGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHh----cCCCcEECCCCcCcC
Confidence 45679 9988763 578999998 99999999999976532 235799999998764
No 17
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.34 E-value=0.00015 Score=57.42 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=34.5
Q ss_pred HhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCc
Q 006644 13 LVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 49 (637)
Q Consensus 13 l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~ 49 (637)
+..++|.||+.+|...||+-+|+|+||++|+.+.|..
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999988764
No 18
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.33 E-value=0.00021 Score=55.60 Aligned_cols=38 Identities=29% Similarity=0.536 Sum_probs=35.1
Q ss_pred HhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCch
Q 006644 13 LVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 50 (637)
Q Consensus 13 l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~ 50 (637)
+..++|.||+..|..-||+.+|+|.||++|+.+.+..+
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e 47 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGP 47 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999988753
No 19
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.31 E-value=0.00029 Score=61.34 Aligned_cols=55 Identities=25% Similarity=0.607 Sum_probs=43.3
Q ss_pred cCCCCcccccCCCCCCCCCceeecCcccc-ccccccccccCCCCcccccCCCCccccccccccc
Q 006644 94 LNLGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 94 ~~~~~~~rC~C~ssl~~~~~iqC~~~~C~-~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
..+....+|+|+... .+.||.|....|. .|+|..|+.+...| ...|+|+.|+..+
T Consensus 31 ~d~~e~~yCiC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p-------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 31 VDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 86 (91)
T ss_dssp CCSCCCBCSTTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCC-------CSSCCCTTTCCCC
T ss_pred cCCCCCcEEECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCC-------CCCEECcCccCcC
Confidence 345677899998765 3689999996676 79999999986543 3689999998653
No 20
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.25 E-value=0.00025 Score=61.16 Aligned_cols=70 Identities=23% Similarity=0.464 Sum_probs=56.9
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHHHHHHHHcc----CCccccCC--CCCC-CCCCCeeecHHHHHHHHHHhc
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQR----TRKWQCPI--CMKN-YSLEDLIIDPYFHRITTMMRN 415 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~----~~~W~CPi--C~k~-~~~~dL~ID~y~~~IL~~l~~ 415 (637)
...|.|||++..|+-|+....|.|. |+.......-.. .....||+ |.+. +...+|+.|..+.++++..+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 3468899999999999998889998 776665554332 35789999 8877 889999999999999876654
No 21
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=97.11 E-value=0.0003 Score=58.97 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=35.3
Q ss_pred HHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCch
Q 006644 12 KLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 50 (637)
Q Consensus 12 ~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~ 50 (637)
.+..++|.||+..|..-||+.+|+|.||++|+.+.++..
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcc
Confidence 467899999999999999999999999999999887643
No 22
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=97.09 E-value=0.00053 Score=53.54 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=33.2
Q ss_pred HhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcC
Q 006644 13 LVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLS 48 (637)
Q Consensus 13 l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~ 48 (637)
+..++|.||+..|..-||+.+|+|.||++|+.+...
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999999999999987654
No 23
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.97 E-value=0.00046 Score=58.56 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=54.6
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHH
Q 006644 343 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 413 (637)
Q Consensus 343 ~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l 413 (637)
+.-.+.|||++..|+-|+... |.|. |+.......-.. ...||+|++.+...+|+.+..+.++++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 455789999999999999987 9997 877666555443 36899999999999999999998887654
No 24
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.84 E-value=0.00066 Score=64.15 Aligned_cols=40 Identities=30% Similarity=0.474 Sum_probs=36.9
Q ss_pred HHHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCch
Q 006644 11 GKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 50 (637)
Q Consensus 11 ~~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~ 50 (637)
..|..|.|.||+.+|..-||+.+|+|+||++|+.++|...
T Consensus 59 g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 59 GTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp TCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred CcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 4588999999999999999999999999999999998865
No 25
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=96.83 E-value=0.00034 Score=56.59 Aligned_cols=53 Identities=26% Similarity=0.588 Sum_probs=40.2
Q ss_pred CCCcccccCCCCCCCCCceeecCcccc-ccccccccccCCCCcccccCCCCccccccccccc
Q 006644 96 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 96 ~~~~~rC~C~ssl~~~~~iqC~~~~C~-~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
+....+|+|+... .+.||.|....|. .|.|..|+++...| ...|+|+.|+-++
T Consensus 8 ~~e~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 8 PNEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKP-------KGKWYCPKCRGDN 61 (62)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHTCC
T ss_pred CCCCcEEECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCC-------CCCEECcCcccCC
Confidence 3456889998753 4689999994455 89999999986542 4689999998654
No 26
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=96.80 E-value=0.0013 Score=54.60 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=41.4
Q ss_pred CCCcccccCCCCCCCCCceeecCcccc-ccccccccccCCCCcccccCCCCccccccccccc
Q 006644 96 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 96 ~~~~~rC~C~ssl~~~~~iqC~~~~C~-~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
+....+|+|+... .+.||.|....|. .|.|..|+.+...| ...|+|+.|+..+
T Consensus 13 ~~~~~~C~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvgl~~~p-------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCSTTCCCS-CSSEECCSCSSCSCCCEETTTTTCSSCC-------SSCCCCTTTSSCS
T ss_pred CCCCCEEECCCCC-CCCEeEeeCCCCCCccEecccCCcCcCC-------CCCEECCCCCccc
Confidence 3456789998764 3689999996677 69999999986542 3689999998653
No 27
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=96.75 E-value=0.00041 Score=55.52 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=39.9
Q ss_pred CCcccccCCCCCCCCCceeecCcccc-ccccccccccCCCCcccccCCCCcccccccccc
Q 006644 97 GGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 97 ~~~~rC~C~ssl~~~~~iqC~~~~C~-~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
....+|+|+... .+.||.|....|. .|.|..|+++...| ...++|+.|+-+
T Consensus 7 ~e~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKP-------KGKWFCPRCVQE 58 (59)
T ss_dssp -CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHCC
T ss_pred CCCcEEECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCC-------CCCEECcCccCc
Confidence 456789998754 4689999997777 69999999986543 268999999754
No 28
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.60 E-value=0.002 Score=56.26 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=54.0
Q ss_pred eEEeecCCCCccccccccCCCCcC-cccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHH
Q 006644 343 IIVNLRCPMSGSRIRVAGRFKPCV-HTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 413 (637)
Q Consensus 343 ~~vsL~CPls~~ri~~P~Rg~~C~-HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l 413 (637)
+.-.+.|||++..|+-|+... |- |. ||.......-.. ...||+|++.+...+|+.+..+.++++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~-cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLP-SSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeECC-CCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 345689999999999999964 66 97 887776665443 45899999999999999999998888754
No 29
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.60 E-value=0.00074 Score=55.85 Aligned_cols=52 Identities=23% Similarity=0.604 Sum_probs=40.0
Q ss_pred CCCcccccCCCCCCCCCceeecCccc-cccccccccccCCCCcccccCCCCcccccccccc
Q 006644 96 LGGKIFCPCGTSLPSESKIQCVDPRC-LVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 96 ~~~~~rC~C~ssl~~~~~iqC~~~~C-~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
+....+|+|+... .+.||+|..-.| ..|+|..|+.+...| ...|+|+.|+..
T Consensus 3 ~~~~~yC~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYCICNQVS-YGEMVGCDNQDCPIEWFHYGCVGLTEAP-------KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCSTTSCCC-CSSEECCSCTTCSCCCEEHHHHTCSSCC-------SSCCCCHHHHHH
T ss_pred CCCCeEEEcCCCC-CCCEeEeCCCCCCccCCcccccccCcCC-------CCCEECCCCCcc
Confidence 3456789998764 468999999333 389999999986542 468999999864
No 30
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=96.57 E-value=0.0009 Score=55.50 Aligned_cols=51 Identities=29% Similarity=0.504 Sum_probs=40.3
Q ss_pred Ccccc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 98 GKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 98 ~~~rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
...+| +|+..-....||.|.. |..|+|..|++++..+ .....|+|+.|+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~~~~~-----~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGIMAAP-----PEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTCSSCC-----CSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCC--CCcccccccCCCCccC-----CCCCCEEChhccCc
Confidence 44568 8988766668999998 9999999999987643 12368999999864
No 31
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.57 E-value=0.0007 Score=54.26 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=44.2
Q ss_pred EeecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeee
Q 006644 345 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLII 402 (637)
Q Consensus 345 vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~I 402 (637)
+++.||||+..|+.|+-...|-|. ||.++....-.+.. .||++++++..++|+-
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIVE 55 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCEE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcEE
Confidence 578999999999999998788887 99988887765544 4999999999888863
No 32
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=96.50 E-value=0.00076 Score=54.07 Aligned_cols=51 Identities=27% Similarity=0.645 Sum_probs=38.8
Q ss_pred CCcccccCCCCCCCCCceeecCcccc-ccccccccccCCCCcccccCCCCcccccccccc
Q 006644 97 GGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 97 ~~~~rC~C~ssl~~~~~iqC~~~~C~-~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
....+|+|+... .+.||.|....|. .|.|..|+++...| ...|+|+.|+-+
T Consensus 8 ~e~~~C~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvgl~~~p-------~g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQE 59 (60)
T ss_dssp -CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHC-
T ss_pred CCCCEEECCCcC-CCCEEEeCCCCCCCceEehhcCCCCcCC-------CCCEECcCccCc
Confidence 456789998754 3689999995565 79999999986543 368999999854
No 33
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.40 E-value=0.00055 Score=75.80 Aligned_cols=54 Identities=24% Similarity=0.475 Sum_probs=43.5
Q ss_pred CCCcccccCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 96 LGGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 96 ~~~~~rC~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
.....+|+|+.... .+.||+|.. |+.|+|..|+++...++ ..++.|+|+.|+-.
T Consensus 34 ~~~~~yC~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 34 PPPPVYCVCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHA----VDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCCEETTTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGG----GGEEEBCCHHHHHH
T ss_pred CCCCeEEeCCCcCCCCCCeEEccC--CCCceeeeecCcCcccc----cCCCEEECCCCcCC
Confidence 34678999998653 688999998 99999999999875432 23578999999965
No 34
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.39 E-value=0.0027 Score=55.66 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=55.8
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHHh
Q 006644 343 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMR 414 (637)
Q Consensus 343 ~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~ 414 (637)
+.-.+.|||++..|+-|+... |.|. ||.......-.. ...||+|+..+...+|+.+..+.++++...
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 345689999999999999987 9997 887776665443 468999999999999999999988887553
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.34 E-value=0.0045 Score=52.30 Aligned_cols=67 Identities=21% Similarity=0.416 Sum_probs=52.8
Q ss_pred eecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCC-CCCCeeecHHHHHHHHHHhc
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY-SLEDLIIDPYFHRITTMMRN 415 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~-~~~dL~ID~y~~~IL~~l~~ 415 (637)
.|.|||.+..+..|+.-..|.|.-|.. +..++. +.....||+|.+.+ ...+|..+..+.++++.++.
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---hcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 578999999999999875699996663 233443 34457999999997 68899999999999887653
No 36
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.34 E-value=0.00058 Score=53.06 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=34.6
Q ss_pred cccCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 006644 101 FCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 153 (637)
Q Consensus 101 rC~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CR 153 (637)
-|+|+.... ...||+|.+ .|+.|+|..|+++...+ ..+..|+|+.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~-----~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEM-----AENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHH-----HHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccc-----cCCCCEECCCCC
Confidence 467776653 567999993 39999999999986432 123789999885
No 37
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.27 E-value=0.00049 Score=65.60 Aligned_cols=53 Identities=28% Similarity=0.495 Sum_probs=41.4
Q ss_pred CCcccccCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 97 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 97 ~~~~rC~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
....+|+|+.... .+.||+|.. |..|+|..|+++...+ ...++.|+|+.|+-.
T Consensus 6 ~~~~~C~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~----~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYCICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSE----AELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHH----HTTCSSCCCHHHHHH
T ss_pred CCCcEeeCCCCCCCCCCEeECCC--CCchhChhhcCCchhh----ccCccCeecCCCcch
Confidence 3567899988653 678999998 9999999999875321 234689999999975
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.20 E-value=0.003 Score=51.75 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=51.7
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHHh
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMR 414 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~ 414 (637)
.|.|||.+..|+.|+.. .|.|. |...-....-. .....||+|++.+...+|+.+..+.++++...
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 67899999999999986 69998 55555444433 34678999999999999999988888877553
No 39
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.09 E-value=0.00053 Score=75.09 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=42.3
Q ss_pred CcccccCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 98 GKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 98 ~~~rC~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
...+|+|+.... .+.||+|.. |+.|+|..|+++...+ ...++.|+|+.|+-..
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~----~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEK----AADIDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHH----HTTEEECCCHHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCccc----ccCCCEEECCCCcccc
Confidence 467999998654 688999998 9999999999986532 1234789999999764
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.01 E-value=0.0058 Score=59.20 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=54.9
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHH
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 413 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l 413 (637)
.-.+.|||++..|+-|+.. .|-|. ||-......-..... .||+|+.++...+|+.+..+..+++..
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 4468899999999999998 69996 888777666544333 699999999999999999998888754
No 41
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=95.85 E-value=0.0046 Score=53.62 Aligned_cols=50 Identities=22% Similarity=0.638 Sum_probs=37.8
Q ss_pred CCCcccccCCCCCCCCCceeecCcccc-ccccccccccCCCCcccccCCCCcccccc-cc
Q 006644 96 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCET-CR 153 (637)
Q Consensus 96 ~~~~~rC~C~ssl~~~~~iqC~~~~C~-~~qH~~C~~~~~kp~~~~p~~p~~f~C~~-CR 153 (637)
.....+|+|+.... +.||.|..-.|. .|.|..|+++...| ...|+|+. |+
T Consensus 23 ~~~~~yCiC~~~~~-g~MI~CD~c~C~~eWfH~~CVgl~~~p-------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYCFCRNVSY-GPMVACDNPACPFEWFHYGCVGLKQAP-------KGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCSTTTCCCS-SSEECCCSSSCSCSCEETTTSSCSSCT-------TSCCCSSHHHH
T ss_pred CCCCcEEEeCCCCC-CCEEEecCCCCccccCcCccCCCCcCC-------CCCccCChhhc
Confidence 34678999987543 579999993333 89999999986542 26899999 97
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.21 E-value=0.013 Score=58.45 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=49.8
Q ss_pred EeecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHH
Q 006644 345 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 413 (637)
Q Consensus 345 vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l 413 (637)
-.+.|||+...|+-|+... |-|. |+.......-...+ ..||+|+.++...+|+.+.-+.++++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~--f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGIT--YDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCE--EETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeECC-CCCE--ECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 3578999999999999866 9998 54444433322222 2399999999999999999999988754
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.20 E-value=0.022 Score=48.80 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=53.8
Q ss_pred EEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHHhc
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRN 415 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~~ 415 (637)
.-.+.|||-+..+..|+....|.|.-|.+ +..|+. ..-.||+|.+.+...+|..+..+.++++.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----YKTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-----CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 34678999999999999888999986653 333432 23589999999999999999999999887654
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.17 E-value=0.011 Score=51.26 Aligned_cols=69 Identities=22% Similarity=0.458 Sum_probs=55.4
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHHhc
Q 006644 343 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRN 415 (637)
Q Consensus 343 ~~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~~ 415 (637)
+.-.+.|||-+..+..|+.-..|.|.-|.+ +..|+... ...||+|.+.+...+|+...++.+|.+.+++
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 344678999999999999878999997774 44555432 2689999999999999999998888776654
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.11 E-value=0.011 Score=55.50 Aligned_cols=70 Identities=27% Similarity=0.495 Sum_probs=54.8
Q ss_pred ceEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCC-CCCCeeecHHHHHHHHHHhc
Q 006644 342 SIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY-SLEDLIIDPYFHRITTMMRN 415 (637)
Q Consensus 342 s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~-~~~dL~ID~y~~~IL~~l~~ 415 (637)
.+.-.+.|||.+..+..|+....|.|.-|.+ +..|+. .....||+|.+.+ ....|..|..+..++..+..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 3445679999999999999988999997764 344443 2357899999988 45789999999999887753
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.89 E-value=0.021 Score=50.63 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=52.1
Q ss_pred EeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHHhc
Q 006644 345 VNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRN 415 (637)
Q Consensus 345 vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l~~ 415 (637)
-.|.|||-+..+..|+....|.|.-|.. +..++. ..||+|.+.+...+|..+..+..++..++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 3578999999999999888999987764 333332 579999999999999999999988876543
No 47
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.79 E-value=0.024 Score=50.61 Aligned_cols=65 Identities=12% Similarity=0.291 Sum_probs=52.0
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHccCCccccCCCCCCCCC-CCeeecHHHHHHHHHH
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSL-EDLIIDPYFHRITTMM 413 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~-~dL~ID~y~~~IL~~l 413 (637)
.-.+.|||.+..+..|+.- .|.|.-|.+- ..|+. .....||+|.+.+.. .+|..+..+..+++.+
T Consensus 50 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred ccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 4457899999999999886 8999977643 34443 445699999999987 8899999999988754
No 48
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.53 E-value=0.0051 Score=59.79 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=37.2
Q ss_pred cc-cCCCCCCCC----CceeecCccccccccccccccCCCCcccccCCC--Cccccccccccc
Q 006644 101 FC-PCGTSLPSE----SKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLP--PLFFCETCRIKR 156 (637)
Q Consensus 101 rC-~C~ssl~~~----~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p--~~f~C~~CRL~~ 156 (637)
.| +|+.....+ .||+|.. |+.|.|..|+++....++.+...| ..|+|+.|+-..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46 588766543 4999998 999999999988542111111122 389999999763
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.50 E-value=0.044 Score=47.71 Aligned_cols=67 Identities=19% Similarity=0.384 Sum_probs=52.0
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCC----CeeecHHHHHHHHHHh
Q 006644 343 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLE----DLIIDPYFHRITTMMR 414 (637)
Q Consensus 343 ~~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~----dL~ID~y~~~IL~~l~ 414 (637)
+.-.+.|||-...+..|+....|.|.-|.. +..++ .. .-.||+|.+.+... +|..+..+.++++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~---~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL---ET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH---TS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHH---Hh--CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 344678999999999999988999986653 23333 22 26899999998876 8999999999887653
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=94.28 E-value=0.045 Score=51.05 Aligned_cols=66 Identities=15% Similarity=0.368 Sum_probs=52.7
Q ss_pred EEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCC-CeeecHHHHHHHHHHh
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLE-DLIIDPYFHRITTMMR 414 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~-dL~ID~y~~~IL~~l~ 414 (637)
.-.+.|||.+..+..|+. ..|.|.-|.. +..++. .....||+|...+... .|..+..+.++++.+.
T Consensus 76 ~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred ccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 345789999999999998 6999987763 344443 2456899999999988 8999999999987653
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.00 E-value=0.033 Score=49.42 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=52.2
Q ss_pred ceEEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHH
Q 006644 342 SIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 413 (637)
Q Consensus 342 s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l 413 (637)
.+.-.+.|||-+..+..|+.. .|.|.-|.+- ..|+.... ..||+|.+.+...++..+.++.+++..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 445568999999999999885 7999977643 34443322 3899999999999999999998887654
No 52
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.98 E-value=0.029 Score=48.74 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=41.7
Q ss_pred eecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCeeecH
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDP 404 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~ 404 (637)
.+.|||-+..+..|+. ..|.|.-|.+ +..|+. .......||+|.+.+...+|..+.
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLN--QKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHH--SSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHH--hCCCCCCCcCCCCcCCHhhcCccH
Confidence 4679999999999988 5899997764 333443 223457999999999888776543
No 53
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.65 E-value=0.012 Score=48.25 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=45.2
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHc-cCCccccCCCCCCCCCCCeeecHHH
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQ-RTRKWQCPICMKNYSLEDLIIDPYF 406 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~-~~~~W~CPiC~k~~~~~dL~ID~y~ 406 (637)
.-.+.|||-+..+..|+. ..|.|.-|.+- ..|+.... ......||+|.+.+..++|..+..+
T Consensus 17 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHV 80 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCC
T ss_pred ccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHH
Confidence 345789999999999986 56999966542 33333221 2347899999999999888877544
No 54
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=93.60 E-value=0.01 Score=52.60 Aligned_cols=52 Identities=17% Similarity=0.451 Sum_probs=37.0
Q ss_pred cCCCCC-CCCCceeec-CccccccccccccccCCCCcccc-cCCCCccccccccccc
Q 006644 103 PCGTSL-PSESKIQCV-DPRCLVQQHISCVIIPEKPMEEI-RLLPPLFFCETCRIKR 156 (637)
Q Consensus 103 ~C~ssl-~~~~~iqC~-~~~C~~~qH~~C~~~~~kp~~~~-p~~p~~f~C~~CRL~~ 156 (637)
+|.... ..+.||+|. . |+.|.|..|+++.....+.+ +.-...|+|+.|+-.+
T Consensus 8 iC~~p~~~~~~mi~Cdd~--C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEAS--CQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTCSBCCTTSCEEECTTT--TCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCccCCCCCEEEecCC--cccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 566654 346799998 5 99999999999875322222 1223789999999753
No 55
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.26 E-value=0.062 Score=42.46 Aligned_cols=52 Identities=12% Similarity=0.314 Sum_probs=39.7
Q ss_pred EEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCe
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDL 400 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL 400 (637)
.-.+.|||-+..++.|+. ..|.|.-|.+ +..|+. .....||+|.+.+..++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT----TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH----hCcCCCCCCCcCCChhhc
Confidence 446789999999999999 6999996653 233332 445789999999987765
No 56
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.09 E-value=0.091 Score=42.28 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=41.8
Q ss_pred EEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCee
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 401 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ 401 (637)
.-.+.|||-+..+..|+.-..|.|.-|.. +..|+.. .-.||+|.+.+...++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 34678999999999999888999997764 4555543 46899999998877654
No 57
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.84 E-value=0.12 Score=41.38 Aligned_cols=56 Identities=14% Similarity=0.452 Sum_probs=41.4
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHc-cCCccccCCCCCCCCCCCee
Q 006644 343 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQ-RTRKWQCPICMKNYSLEDLI 401 (637)
Q Consensus 343 ~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC~k~~~~~dL~ 401 (637)
+.-.+.|||-+..+..|+.. .|.|.-|.+ -+....+ ......||+|.+.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLK--CITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEEHH--HHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhhHH--HHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 34568899999999999887 999996653 3333322 24567899999999887763
No 58
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.50 E-value=0.17 Score=41.12 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=45.9
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccCH-HHHHHHH-ccCCccccCCCCCCCCCCCeeecHHH
Q 006644 343 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELN-QRTRKWQCPICMKNYSLEDLIIDPYF 406 (637)
Q Consensus 343 ~~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n-~~~~~W~CPiC~k~~~~~dL~ID~y~ 406 (637)
+.-.+.|||-+..+..|+.. .|.|.-|.+- ..|+... .......||+|.+.+...+|..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 34468899999999999875 8999977653 3444432 23457899999999988887765443
No 59
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=91.44 E-value=0.1 Score=42.33 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=38.2
Q ss_pred EEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCC
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 397 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 397 (637)
.-.+.|||-+..+..|+....|.|.-|.. +..|+.. .....||+|.+....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---SDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---SSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---cCCCcCCCCCCcCCC
Confidence 44688999999999999966699997775 3445442 335789999987543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=91.35 E-value=0.12 Score=48.47 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=52.5
Q ss_pred eceEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHHHHHHH
Q 006644 341 DSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 413 (637)
Q Consensus 341 ~s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~IL~~l 413 (637)
+.+.-.|.|||-+..+..|+. ..|.|.-|.+ +..++.... ..||+|.+.+...+|..|.++.+++..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 345557899999999999988 5899997764 333443221 2999999999999999999998877544
No 61
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.87 E-value=0.24 Score=40.55 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=41.9
Q ss_pred EeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCeeecHHHHH
Q 006644 345 VNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHR 408 (637)
Q Consensus 345 vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ID~y~~~ 408 (637)
..+.|||-+..+..|+. ..|.|.-|+. +..|+. . ...||+|.+.+. ..+.....+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~--~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR---A--TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH---H--CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH---C--CCcCCCcCcccc-ccCCcHHHHHH
Confidence 36789999999999986 6899997763 334443 2 458999999986 66777754433
No 62
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=90.55 E-value=0.024 Score=46.15 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=33.5
Q ss_pred cCCCCC-CCCCceeec-CccccccccccccccCCCCccccc-CCCCcccccccc
Q 006644 103 PCGTSL-PSESKIQCV-DPRCLVQQHISCVIIPEKPMEEIR-LLPPLFFCETCR 153 (637)
Q Consensus 103 ~C~ssl-~~~~~iqC~-~~~C~~~qH~~C~~~~~kp~~~~p-~~p~~f~C~~CR 153 (637)
+|.... ....||+|. . |+.|.|..|+++....++-+. ..-..|+|+.|+
T Consensus 13 ~C~~p~~~~~~mI~CD~~--C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 13 ICTNEVNDDQDAILCEAS--CQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp TTCSBCCTTSCEEEBTTT--TCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCCCccCCCCCeEecccC--ccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 566654 346899999 6 999999999998653222221 112488998885
No 63
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=90.26 E-value=0.13 Score=45.04 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=47.7
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCC-------CCeeecHHHHHHHHHH
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSL-------EDLIIDPYFHRITTMM 413 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~-------~dL~ID~y~~~IL~~l 413 (637)
.+.|||-+..+..|+.- .|.|.-|.+- +... .......||+|.+.+.. .++.+|..+.++++..
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~C--i~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPC--FQST-VEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHH--HCCC-CCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHH--HHHH-HhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 57899999999999887 7999866532 1111 12335789999998864 7888999988887643
No 64
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=89.97 E-value=0.081 Score=58.87 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=32.3
Q ss_pred CCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 110 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 110 ~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
...||+|.. |+.|+|..|+++....+ ...+.|+||.|+-.
T Consensus 55 ~~~mI~CD~--C~~WfH~~CVgi~~~~a----~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDS--CQTWYHFLCSGLEQFEY----YLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTT--TCCEEEGGGTTCCGGGT----TTEEECCCTTTHHH
T ss_pred CCCEEECCC--CCcCCCCcCCCCChhHh----cCCCeEECcCCcCC
Confidence 457999998 99999999999875432 23479999999964
No 65
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.71 E-value=0.2 Score=44.02 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=48.1
Q ss_pred EEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCee-ecHHHHHHHHHH
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI-IDPYFHRITTMM 413 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~-ID~y~~~IL~~l 413 (637)
.-.+.|||-+..+..|+. ..|.|.-|.. +..|+... .-.||+|.+.+...+|. .+..+.++++.+
T Consensus 21 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 21 VKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred cCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 346889999999999998 5899997764 34444331 34799999999988875 566776666544
No 66
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=89.36 E-value=0.019 Score=46.68 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=40.2
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHcc-----CCccccCCCCCCCCCCCeeecHH
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQR-----TRKWQCPICMKNYSLEDLIIDPY 405 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~-----~~~W~CPiC~k~~~~~dL~ID~y 405 (637)
.+.|||-+..+..|+. ..|.|.-|.+ =+...... .....||+|.+.+...+|..+..
T Consensus 12 ~~~C~IC~~~~~~p~~-l~CgH~fC~~--Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 12 EVTCPICLELLTEPLS-LDCGHSLCRA--CITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCEETTTTEECSSCCC-CSSSCCCCHH--HHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred CCCCcCCCcccCCeeE-CCCCCHHHHH--HHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 5779999999999987 4899986643 22221111 23679999999998877665543
No 67
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=88.50 E-value=0.46 Score=43.76 Aligned_cols=46 Identities=28% Similarity=0.386 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhcCchh
Q 006644 6 VASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG 51 (637)
Q Consensus 6 ~~~~k~~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL~~~~ 51 (637)
....+.+|.-+...+|.+++..|+++++|.|.||++|+++-|..+.
T Consensus 65 ~~k~~e~l~K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~P~ 110 (131)
T 2jx3_A 65 YKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPK 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCcc
Confidence 3456788899999999999999999999999999999999999877
No 68
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.44 E-value=0.28 Score=37.28 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=33.7
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 154 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL 154 (637)
+|+..-..+.||.|.. |..+.|..|+..+. ..+|. ..++|+.|+-
T Consensus 5 vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p~l---~~~P~--g~W~C~~C~~ 49 (51)
T 1f62_A 5 VCRKKGEDDKLILCDE--CNKAFHLFCLRPAL---YEVPD--GEWQCPACQP 49 (51)
T ss_dssp TTCCSSCCSCCEECTT--TCCEECHHHHCTTC---CSCCS--SCCSCTTTSC
T ss_pred CCCCCCCCCCEEECCC--CChhhCcccCCCCc---CCCCC--CcEECcCccc
Confidence 5666555678999998 99999999997543 23332 5899999974
No 69
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=87.98 E-value=0.14 Score=42.23 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=36.3
Q ss_pred cCCCC--CCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccccCCc
Q 006644 103 PCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 159 (637)
Q Consensus 103 ~C~ss--l~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~~dP 159 (637)
+|+.. -..+.||.|.. |..+.|..|++++. +| ...++|+.|+..+.-|
T Consensus 21 vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~-----vP--~g~W~C~~C~~~~~~p 70 (71)
T 2ku3_A 21 ICMDGESQNSNVILFCDM--CNLAVHQECYGVPY-----IP--EGQWLCRHCLQSRARP 70 (71)
T ss_dssp SSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSS-----CC--SSCCCCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCEEECCC--CCCccccccCCCCc-----CC--CCCcCCccCcCcCccC
Confidence 67643 35678999998 99999999998753 23 2589999998765433
No 70
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.87 E-value=0.57 Score=36.64 Aligned_cols=52 Identities=19% Similarity=0.403 Sum_probs=37.8
Q ss_pred ecCCCCcc-ccccccC---CCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCeee
Q 006644 347 LRCPMSGS-RIRVAGR---FKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLII 402 (637)
Q Consensus 347 L~CPls~~-ri~~P~R---g~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~I 402 (637)
+.||+-+. .+..|.+ ...|.|.-|.. +..++. ....+||+|++.+...+++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 56999999 8888875 46899986653 223322 23578999999998887754
No 71
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=86.61 E-value=0.25 Score=44.96 Aligned_cols=59 Identities=25% Similarity=0.570 Sum_probs=40.7
Q ss_pred eecCCCCccccccccCCCCcCcccccCH-HHHHHHHccCCccccCCCCCCCCCC--CeeecHHHHHHH
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLE--DLIIDPYFHRIT 410 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~--dL~ID~y~~~IL 410 (637)
.|.|||-+..+..|+- ..|.|.-|.+- ..|+ . ..-.||+|.+.+... ++.+|..+..++
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~---~--~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYCINEWM---K--RKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHT---T--TCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHHHHHHH---H--cCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 3679999999999985 57999877654 2232 2 235799999887532 556666665554
No 72
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=85.34 E-value=0.21 Score=42.84 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=37.8
Q ss_pred cCCCCC--CCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccccCCchhH
Q 006644 103 PCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWI 162 (637)
Q Consensus 103 ~C~ssl--~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~~dPF~~ 162 (637)
+|+..- ..+.||.|.. |..+.|..|+.++. +|. ..++|+.|+.....+|.+
T Consensus 30 vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~-----vP~--g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 30 ICMDGESQNSNVILFCDM--CNLAVHQECYGVPY-----IPE--GQWLCRHCLQSRARPALE 82 (88)
T ss_dssp SCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSS-----CCS--SCCCCHHHHHHTTSCC--
T ss_pred cCCCCCCCCCCCEEECCC--CCchhhcccCCCCc-----cCC--CceECccccCccchhhhh
Confidence 777543 4568999998 99999999998753 232 589999999876666553
No 73
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=85.29 E-value=0.11 Score=47.85 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=51.8
Q ss_pred ceeeeceEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCC---------CCeeecHHH
Q 006644 337 EIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL---------EDLIIDPYF 406 (637)
Q Consensus 337 EIv~~s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~---------~dL~ID~y~ 406 (637)
+++...+.-.|.|||-...++-|+. ..|.|.-|.. +..|+ +.....||+|.+.+.+ .++..|.++
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASIL----SSGPQNCAACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHG----GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHH----hcCCCCCCCCCCcccccccccccchhhhcccHHH
Confidence 4444566678899999999999988 5999997764 23333 2344689999886543 356789998
Q ss_pred HHHHHHH
Q 006644 407 HRITTMM 413 (637)
Q Consensus 407 ~~IL~~l 413 (637)
.+.+..|
T Consensus 97 ~~~i~~L 103 (141)
T 3knv_A 97 RREVESL 103 (141)
T ss_dssp HHHHHTS
T ss_pred HHHHccc
Confidence 8877544
No 74
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.18 E-value=0.39 Score=36.98 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.2
Q ss_pred ecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCee
Q 006644 347 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 401 (637)
Q Consensus 347 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ 401 (637)
+.|||-+..+..|. ....|.|.-|.+ +..|+.. ...||+|.+.+...++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 56999999988874 456899986653 3344432 35899999998877664
No 75
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.05 E-value=0.7 Score=37.32 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=36.4
Q ss_pred eecCCCCcccccccc--CCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCee
Q 006644 346 NLRCPMSGSRIRVAG--RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 401 (637)
Q Consensus 346 sL~CPls~~ri~~P~--Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ 401 (637)
.+.|||-+..+..|. +...|.|.-|++ +..|+. ....||+|.+.+...++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-----QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-----TTCSCTTTCCCCCCSCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-----cCCcCcCcCCccCCcccC
Confidence 567999988887654 335799987775 445553 225899999998776654
No 76
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.92 E-value=0.47 Score=40.92 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=37.1
Q ss_pred cccc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 99 KIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 99 ~~rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
...| +|+..-....||.|.. |..+.|..|+..+.. .+|. ..++|+.|+..
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~Ppl~---~~P~--g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLPPLP---EIPR--GIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTT--TCCEECSSSSSSCCS---SCCS--SCCCCHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCC--CCchhccccCCCCcc---cCCC--CCcCCccCcCc
Confidence 3446 7876655567999998 999999999985432 3343 58999999864
No 77
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=84.71 E-value=0.52 Score=45.53 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=32.5
Q ss_pred CcccccCCCCCC-CCCceeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 006644 98 GKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 154 (637)
Q Consensus 98 ~~~rC~C~ssl~-~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL 154 (637)
-...|.||..-. ...|+||.. |.+|.|..|+..+..++-++ ..-=.|.|..|.-
T Consensus 4 ~~~yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp~-~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 4 QAGSVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLPF-MTNYSFHCNVCHH 58 (177)
T ss_dssp -------CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCTT-CCSEEEECTTTST
T ss_pred eeeEEEcCCCCCCCceeEeecc--ccceecHHHhcccccCcccc-ceeEEEEccccCC
Confidence 345899998543 567999999 99999999998765433221 1122667888863
No 78
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=84.41 E-value=0.47 Score=37.43 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=36.5
Q ss_pred ecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCee
Q 006644 347 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 401 (637)
Q Consensus 347 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ 401 (637)
+.|||-+..+..|. ....|.|.-|.+ +..|+.. . -.||+|.+.+...++.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~--~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---A--NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---C--SBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---C--CCCCCCCCccChhhee
Confidence 46999999998884 567899986663 3445532 2 3899999998776653
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.72 E-value=0.83 Score=36.28 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=35.8
Q ss_pred CCcccc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 97 GGKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 97 ~~~~rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
.....| +|+. .+.||.|.. |..+.|..|+..+.+ .+| ...++|+.|+-.
T Consensus 9 ~~~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~p~l~---~~p--~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQ---GGEIILCDT--CPRAYHMVCLDPDME---KAP--EGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSC---CSSEEECSS--SSCEEEHHHHCTTCC---SCC--CSSCCCTTGGGG
T ss_pred CCCCCCccCCC---CCcEEECCC--CChhhhhhccCCCCC---CCC--CCceECcccccc
Confidence 344566 4775 368999998 999999999987532 223 258999999753
No 80
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.52 E-value=0.82 Score=37.51 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=36.6
Q ss_pred eecCCCCcccccc----ccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCC
Q 006644 346 NLRCPMSGSRIRV----AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLED 399 (637)
Q Consensus 346 sL~CPls~~ri~~----P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~d 399 (637)
.+.|||-+..+.. |+.. .|.|.-|.+ +..|+.. ......||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLAS--SINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHH--CSSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHc--CCCCcCCCCCCCcccchh
Confidence 5779999999887 6554 799987664 3344432 234689999999887654
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.46 E-value=0.9 Score=36.85 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=33.8
Q ss_pred ccc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 100 IFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 100 ~rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
.+| +|+. .+.+|.|.. |....|..|+..+.+ .+| ...++|+.|+-.
T Consensus 13 ~~C~vC~~---~~~ll~Cd~--C~~~~H~~Cl~P~l~---~~P--~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGD---GTDVLRCTH--CAAAFHWRCHFPAGT---SRP--GTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSC---CTTCEECSS--SCCEECHHHHCTTTC---CCC--SSSCCCTTTTTC
T ss_pred CCcCCCCC---CCeEEECCC--CCCceecccCCCccC---cCC--CCCEECccccCC
Confidence 445 6763 467999998 999999999976433 233 257999999854
No 82
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=83.42 E-value=0.68 Score=36.30 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=34.5
Q ss_pred eecCCCCccccccccCCCCcCcccccCH-HHHHHHHccCCccccCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
...||+-+..+..|+....|.|.-|++- ..|+.. ...||+|.+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-----SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-----cCcCcCCChhhH
Confidence 3469999999988888888999977753 345532 258999998764
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=82.85 E-value=0.98 Score=36.34 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=34.5
Q ss_pred ccc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 100 IFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 100 ~rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
..| +|+.. +.||-|.. |..+.|..|+..+.+ .+|. ..++|+.|+..+
T Consensus 9 ~~C~vC~~~---g~ll~CD~--C~~~fH~~Cl~ppl~---~~P~--g~W~C~~C~~~~ 56 (66)
T 1xwh_A 9 DECAVCRDG---GELICCDG--CPRAFHLACLSPPLR---EIPS--GTWRCSSCLQAT 56 (66)
T ss_dssp CSBSSSSCC---SSCEECSS--CCCEECTTTSSSCCS---SCCS--SCCCCHHHHHTC
T ss_pred CCCccCCCC---CCEEEcCC--CChhhcccccCCCcC---cCCC--CCeECccccCcc
Confidence 345 57643 57999998 999999999986432 3333 589999998653
No 84
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=82.34 E-value=0.15 Score=45.26 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=27.5
Q ss_pred CceeecCccccccccccccccCCCCcccccCC--CCccccccccc
Q 006644 112 SKIQCVDPRCLVQQHISCVIIPEKPMEEIRLL--PPLFFCETCRI 154 (637)
Q Consensus 112 ~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~--p~~f~C~~CRL 154 (637)
.||+|.. |..|.|..|..++....+-+... ...+.|+.|.-
T Consensus 1 ~mi~c~~--c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCSC--CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred Ccccccc--CCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 3899999 99999999998753111111122 23688888864
No 85
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.57 E-value=0.32 Score=38.88 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=33.8
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE 398 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~ 398 (637)
.+.|||-+..++.|+.. .|.|.-|.+ =+..... ....||+|.+.+...
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~--~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYL--CVKGASW--LGKRCALCRQEIPED 62 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHH--HHHHCTT--CSSBCSSSCCBCCHH
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHH--HHHHHHH--CCCcCcCcCchhCHh
Confidence 46799999999999776 699996643 2222212 236899999887543
No 86
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.71 E-value=1 Score=34.55 Aligned_cols=45 Identities=31% Similarity=0.620 Sum_probs=32.5
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE 398 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~ 398 (637)
.|.|||-+..+..|+. ..|.|.-|.+--. .....||+|.+.+...
T Consensus 6 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~-------~~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKL-LPCLHTLCSGCLE-------ASGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBCCSC-STTSCCSBTTTCS-------SSSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCCeEE-cCCCCcccHHHHc-------cCCCCCCcCCcEeecC
Confidence 3669999999999955 5699986654311 1356899999887654
No 87
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.28 E-value=1.1 Score=34.75 Aligned_cols=47 Identities=19% Similarity=0.527 Sum_probs=34.6
Q ss_pred ceEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHccCCccccCCC
Q 006644 342 SIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPIC 391 (637)
Q Consensus 342 s~~vsL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC 391 (637)
.+.-.+.|||-+..+..|+.. .|.|.-|.+ +..|++. .....+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 345578899999999999987 899996653 3444432 3356789998
No 88
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=79.12 E-value=1.4 Score=32.88 Aligned_cols=43 Identities=23% Similarity=0.551 Sum_probs=29.1
Q ss_pred cCCCCcccccc---ccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCC
Q 006644 348 RCPMSGSRIRV---AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY 395 (637)
Q Consensus 348 ~CPls~~ri~~---P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~ 395 (637)
.|||-+..+.. +.+...|.|.-|.+ +..|+... ..||+|.+.+
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 53 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPS 53 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSS
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 47777777644 45556799986665 34455432 7899999876
No 89
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=79.05 E-value=1.3 Score=35.20 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=34.3
Q ss_pred cCCCC--CCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 103 PCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 103 ~C~ss--l~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
+|+.. -..+.||.|.. |....|..|+..+.+. +.++ -...++|+.|+..
T Consensus 11 vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~-~~~~-p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 11 ICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDS-SVID-SDEKWLCRQCVFA 61 (66)
T ss_dssp SSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCH-HHHH-SSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccc-cccC-CCCCEECCCCcCc
Confidence 67654 34578999998 9999999999875421 0011 1357899999864
No 90
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.77 E-value=0.87 Score=36.61 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=32.5
Q ss_pred ecCCCCccccccc--cCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCC
Q 006644 347 LRCPMSGSRIRVA--GRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 397 (637)
Q Consensus 347 L~CPls~~ri~~P--~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 397 (637)
..|||-+..+..+ ++...|.|.-|++ +..|+.. ...||+|.+.+..
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-----NRTCPICRADSGP 72 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-----CSSCTTTCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-----CCcCcCcCCcCCC
Confidence 4588888887766 4555699987765 4556643 2489999988765
No 91
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=78.35 E-value=1.3 Score=44.34 Aligned_cols=46 Identities=24% Similarity=0.621 Sum_probs=30.3
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 154 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL 154 (637)
+|+.+-..+.||.|.. |....|..|+..+. ..+|. ...++|+.|+-
T Consensus 179 vC~~~~~~~~lL~CD~--C~~~yH~~CL~PPL---~~vP~-G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPL---SSVPS-EDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC--CCEECSS--SCCEECSCC--CCC---CSCCS-SSCCCCGGGC-
T ss_pred CCCCCCCCCCeEEcCC--CCcceeCccCCCCc---ccCCC-CCCCCCcCCcC
Confidence 4666555678999998 99999999998643 33332 12789999974
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=76.54 E-value=1.5 Score=34.45 Aligned_cols=43 Identities=26% Similarity=0.584 Sum_probs=32.1
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
+|+.. +.||.|.. |..+.|..|+..+.+ .+|. ..++|+.|+-.
T Consensus 10 vC~~~---g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p~--g~W~C~~C~~~ 52 (60)
T 2puy_A 10 VCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIPK--GMWICPRCQDQ 52 (60)
T ss_dssp TTCCC---SSCEECSS--SSCEECGGGSSSCCS---SCCC--SCCCCHHHHHH
T ss_pred CCCCC---CcEEEcCC--CCcCEECCcCCCCcC---CCCC--CceEChhccCh
Confidence 56653 67999998 999999999986432 3332 58999999753
No 93
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.41 E-value=2.8 Score=31.45 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=31.9
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHHHHHHHHc-cCCccccCCC
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQ-RTRKWQCPIC 391 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC 391 (637)
.-.+.|||-+..++.|+. ..|.|.-|. .=+..... ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~--~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI-IECGHNFCK--ACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC-CSSCCCCCH--HHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe-CCCCCccCH--HHHHHHHHhcCCCCCCCCC
Confidence 345789999999999977 579999554 33333322 2356799998
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=75.72 E-value=1.6 Score=35.70 Aligned_cols=46 Identities=24% Similarity=0.621 Sum_probs=34.2
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 154 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL 154 (637)
+|+.+-..+.||.|.. |....|..|+..+. ..+|. ...++|+.|+.
T Consensus 23 ~C~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl---~~~P~-g~~W~C~~C~~ 68 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPL---SSVPS-EDEWYCPECRN 68 (70)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEEGGGSSSCC---SSCCS-SSCCCCTTTSC
T ss_pred CCCCcCCCCCEEEcCC--CCCceecccCCCCc---CCCCC-CCCcCCcCccC
Confidence 4666656778999998 99999999998543 23332 12789999974
No 95
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.47 E-value=2.3 Score=35.44 Aligned_cols=45 Identities=24% Similarity=0.706 Sum_probs=33.7
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 153 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CR 153 (637)
+|+.+-..+.||.|.. |....|..|+..+. ..+|. -..++|+.|+
T Consensus 31 vC~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl---~~~P~-g~~W~C~~C~ 75 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCDE--CNVAYHIYCLNPPL---DKVPE-EEYWYCPSCK 75 (77)
T ss_dssp SSCCCCCSTTEEECSS--SCCEEETTSSSSCC---SSCCC-SSCCCCTTTC
T ss_pred CcCCcCCCCCEEEcCC--CCccccccccCCCc---cCCCC-CCCcCCcCcc
Confidence 4676666788999998 99999999998543 33332 1268999996
No 96
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.38 E-value=1.5 Score=36.68 Aligned_cols=45 Identities=24% Similarity=0.638 Sum_probs=32.8
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 153 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CR 153 (637)
+|+..-..+.+|.|.. |....|..|+..+. ..+|.. +.++|+.|+
T Consensus 31 vC~~~~d~~~ll~CD~--C~~~yH~~Cl~PpL---~~~P~g-~~W~C~~C~ 75 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPL---SSVPSE-DEWYCPECR 75 (77)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEETTTSSSCC---SSCCSS-SCCCCTTTC
T ss_pred ccCCCCCCcceeEeCC--CCCccCcccCCCcc---cCCCCC-CceECcCcc
Confidence 3555555678999998 99999999998643 334432 338999997
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.88 E-value=1.8 Score=37.90 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=35.8
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccccC
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRA 157 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~~ 157 (637)
+|+..-....||.|.. |....|..|+..+. ..+|. ..++|+.|+..+.
T Consensus 59 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl---~~~P~--g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 59 NCKQSGEDSKMLVCDT--CDKGYHTFCLQPVM---KSVPT--NGWKCKNCRICIS 106 (111)
T ss_dssp TTCCCSCCTTEEECSS--SCCEEEGGGSSSCC---SSCCS--SCCCCHHHHCCSC
T ss_pred ccCccCCCCCeeECCC--CCcHHhHHhcCCcc---ccCCC--CCcCCcCCcCcCC
Confidence 4666655567999998 99999999997643 33443 5899999987643
No 98
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.82 E-value=1.8 Score=33.55 Aligned_cols=44 Identities=30% Similarity=0.699 Sum_probs=32.3
Q ss_pred ccc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 006644 100 IFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 153 (637)
Q Consensus 100 ~rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CR 153 (637)
..| +|+.. +.||.|.. |..+.|..|+..+.+ .+|. ..++|+.|+
T Consensus 10 ~~C~vC~~~---g~ll~Cd~--C~~~~H~~Cl~ppl~---~~p~--g~W~C~~C~ 54 (56)
T 2yql_A 10 DFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIPK--GMWICPRCQ 54 (56)
T ss_dssp CSCSSSCCS---SCCEECSS--SSCEECSSSSSSCCC---SCCC--SSCCCHHHH
T ss_pred CCCccCCCC---CeEEEcCC--CCcceECccCCCCcC---CCCC--CceEChhhh
Confidence 345 57653 57999998 999999999986433 2332 578999886
No 99
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=73.93 E-value=1.6 Score=38.14 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=36.8
Q ss_pred eecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCee
Q 006644 346 NLRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 401 (637)
Q Consensus 346 sL~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ 401 (637)
.+.|||-+..++.|+ ....|.|.-|.+ +..|+. . .-.||+|.+.+...++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---N--ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---T--CSBCTTTCCBCTTTCEE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---h--CCCCCCCCCcCcccccc
Confidence 367999999999884 556899986664 334443 2 23999999998766543
No 100
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=71.04 E-value=4.9 Score=33.18 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=34.2
Q ss_pred eecCCCCccccccc-cCCCC--cCcccccCHHHHHHHHccCCccccCCCCCCCCCCCe
Q 006644 346 NLRCPMSGSRIRVA-GRFKP--CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDL 400 (637)
Q Consensus 346 sL~CPls~~ri~~P-~Rg~~--C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~dL 400 (637)
.+.|||-...+.++ .+... |.|.-|.+- +..+.. .....||+|.+.+....+
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~C--l~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFC--WHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHH--HHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHH--HHHHHh-cCCCCCCCCCCccCCCch
Confidence 35699999877653 33333 999866543 333322 246899999999876655
No 101
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.76 E-value=2.2 Score=33.13 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=32.9
Q ss_pred eecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 346 sL~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
.+.|||-+..+..|. ....|.|.-|.+ +..|+.. .-.||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 467999999998884 446899986654 3344432 348999998864
No 102
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.11 E-value=3.1 Score=33.07 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=31.6
Q ss_pred eecCCCCccccccccCCC--CcCcccccC-HHHHHHHHccCCccccCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAGRFK--PCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~--~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
...|||-+..+..|.... .|.|.-|++ +..|+.. . ..||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~---~--~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---R--KVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH---C--SBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc---C--CcCCCcCcccc
Confidence 456999988887665542 799986654 4455543 2 28999998763
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=67.68 E-value=3.2 Score=36.81 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=31.8
Q ss_pred cccc-CCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 006644 100 IFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 153 (637)
Q Consensus 100 ~rC~-C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CR 153 (637)
..|. |+ ..+.||-|.+..|..+.|..|+++... | ...++|+.|+
T Consensus 16 ~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~L~~~-----P--~g~W~Cp~c~ 60 (107)
T 4gne_A 16 DYCFQCG---DGGELVMCDKKDCPKAYHLLCLNLTQP-----P--YGKWECPWHQ 60 (107)
T ss_dssp SSCTTTC---CCSEEEECCSTTCCCEECTGGGTCSSC-----C--SSCCCCGGGB
T ss_pred CCCCcCC---CCCcEeEECCCCCCcccccccCcCCcC-----C--CCCEECCCCC
Confidence 3464 44 357899999555999999999986433 2 3578998765
No 104
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=65.93 E-value=6.7 Score=30.94 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=33.3
Q ss_pred cc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 101 FC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 101 rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
.| +|+. .+.||.|.. |....|..|+..+.+ .+| ...++|+.|+..
T Consensus 11 ~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p--~g~W~C~~C~~~ 56 (61)
T 1mm2_A 11 FCRVCKD---GGELLCCDT--CPSSYHIHCLNPPLP---EIP--NGEWLCPRCTCP 56 (61)
T ss_dssp SCTTTCC---CSSCBCCSS--SCCCBCSSSSSSCCS---SCC--SSCCCCTTTTTT
T ss_pred cCCCCCC---CCCEEEcCC--CCHHHcccccCCCcC---cCC--CCccCChhhcCc
Confidence 35 4664 467999998 999999999986432 333 257999999854
No 105
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=65.08 E-value=5.9 Score=29.39 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=27.7
Q ss_pred cCCCCcccccc---ccCCCCcCcccccCH-HHHHHHHccCCccccCCCCCCCC
Q 006644 348 RCPMSGSRIRV---AGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 348 ~CPls~~ri~~---P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
.|||-+..+.. +.....|.|.-|.+- ..|+ .....||+|.+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----GSHSTCPLCRLTVV 54 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----TTCCSCSSSCCCSC
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHHHHHH-----HcCCcCcCCCCEeE
Confidence 47777777665 344346999865542 2333 22468999998764
No 106
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=64.64 E-value=4.3 Score=31.71 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=30.3
Q ss_pred eecCCCCccccc--cccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCC
Q 006644 346 NLRCPMSGSRIR--VAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 397 (637)
Q Consensus 346 sL~CPls~~ri~--~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 397 (637)
...|||-+..+. .+++...|.|.-|++ +..|+.. ...||+|.+.+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-----NKKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-----CSBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-----CCCCcCcCccccC
Confidence 456888877765 344556799986653 3445443 2369999987753
No 107
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=64.00 E-value=3.3 Score=35.77 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=32.7
Q ss_pred cCCCCcccccccc-----------------CCCCcCcccccC-HHHHHHHHccCCccccCCCCCCC
Q 006644 348 RCPMSGSRIRVAG-----------------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY 395 (637)
Q Consensus 348 ~CPls~~ri~~P~-----------------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~ 395 (637)
.|||-+..+..|. +-..|.|.-|++ +..||....+...-.||+|.+.+
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 4888888876654 145799986553 45666544435567999999775
No 108
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.30 E-value=4 Score=36.11 Aligned_cols=46 Identities=28% Similarity=0.470 Sum_probs=35.1
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
+|+.....+.||.|.. |....|..|+..+. ..+|. ..++|+.|+..
T Consensus 63 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl---~~~P~--g~W~C~~C~~~ 108 (114)
T 2kwj_A 63 LCGTSENDDQLLFCDD--CDRGYHMYCLNPPV---AEPPE--GSWSCHLCWEL 108 (114)
T ss_dssp TTTCCTTTTTEEECSS--SCCEEETTTSSSCC---SSCCS--SCCCCHHHHHH
T ss_pred cccccCCCCceEEcCC--CCccccccccCCCc---cCCCC--CCeECccccch
Confidence 5677666788999998 99999999998543 33443 47899999753
No 109
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.86 E-value=3.4 Score=33.34 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=33.0
Q ss_pred EEeecCCCCccccccccCCCCcCcc-cccCHHHHHHHHccCCccccCCCCCCCCC
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYSL 397 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 397 (637)
.-.+.|||-+.....|+. ..|.|. -|.+-.. ...+||+|.+.+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 345679999999988876 579998 6655431 13799999987743
No 110
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=62.82 E-value=1.8 Score=35.00 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=31.0
Q ss_pred eecCCCCccccccccCCCCcCcc-cccCHHHHHHHHccCCccccCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
.+.||+-+..+..|+-- .|.|. -|++-..-+ ..||+|.+.+.
T Consensus 24 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV--------DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC--------SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC--------ccCCCcCcCcc
Confidence 45799999988888754 79998 666542211 89999998764
No 111
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=55.93 E-value=3.8 Score=32.17 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=29.3
Q ss_pred cCCCCccccccccC-CCCcCcc-cccCHHHHHHHHccCCccccCCCCCCC
Q 006644 348 RCPMSGSRIRVAGR-FKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNY 395 (637)
Q Consensus 348 ~CPls~~ri~~P~R-g~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~ 395 (637)
.|++-+.+.+.++= ...|.|+ -|++-..-+. ++ .++||+|.+.+
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~~--~~~CPiCR~~i 54 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK--KA--GASCPICKKEI 54 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH--HT--TCBCTTTCCBC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH--Hh--CCcCCCcCchh
Confidence 48888777665542 2379998 5766554332 22 37999999887
No 112
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=55.93 E-value=8 Score=39.26 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=29.9
Q ss_pred hhcChHHHHHHHHHcCCCCCCChHHHHHHHHHh
Q 006644 14 VNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQ 46 (637)
Q Consensus 14 ~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~l 46 (637)
.+..++.||.|....|++.+|+|.+|++|+.+.
T Consensus 2 ~~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 2 ATVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp -CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 457889999999999999999999999999885
No 113
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.85 E-value=12 Score=28.99 Aligned_cols=30 Identities=33% Similarity=0.635 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHcCCCCCCChHHHHHHHHHh
Q 006644 17 RMKELKDVLTKLGLPKQGKKQDLVDRIFHQ 46 (637)
Q Consensus 17 Rv~ELq~lL~~lg~~KsGrK~eL~~R~L~l 46 (637)
--.|||.-|..+|-+-+|...||++|.-.+
T Consensus 12 ~~~ELQaKLaE~GAPi~g~REElvdRLk~Y 41 (58)
T 2do5_A 12 AAQELQAKLAEIGAPIQGNREELVERLQSY 41 (58)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCcccccHHHHHHHHHHH
Confidence 347999999999999999999999998654
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.19 E-value=9.3 Score=33.60 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=32.2
Q ss_pred cCCCC-CCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 006644 103 PCGTS-LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 154 (637)
Q Consensus 103 ~C~ss-l~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL 154 (637)
+|+.. ...+.+|.|.. |....|..|+..+. ..+|. ..++|+.|+-
T Consensus 66 vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~l---~~~P~--~~W~C~~C~~ 111 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDS--CDRGFHMECCDPPL---TRMPK--GMWICQICRP 111 (112)
T ss_dssp TTCCCCCTTCCCEECTT--TCCEECGGGCSSCC---SSCCS--SCCCCTTTSC
T ss_pred cccCcCCCccceEEcCC--CCCeeecccCCCCC---CCCCC--CCeECCCCCC
Confidence 35543 33467999998 99999999997543 33343 3789999974
No 115
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.22 E-value=4.8 Score=33.05 Aligned_cols=32 Identities=19% Similarity=0.610 Sum_probs=19.8
Q ss_pred CcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCe
Q 006644 364 PCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDL 400 (637)
Q Consensus 364 ~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL 400 (637)
.|.|.-+++ +..||. +. -.||+|.+.+.+.++
T Consensus 47 ~C~H~FH~~Ci~~Wl~---~~--~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVK---QN--NRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTSCEEEHHHHHHHTT---TC--CBCTTTCCBCCEEEE
T ss_pred CCCCccChHHHHHHHH---hC--CCCCCcCCCcchhhc
Confidence 599984332 334443 22 289999998866543
No 116
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=53.46 E-value=6.8 Score=34.37 Aligned_cols=40 Identities=20% Similarity=0.510 Sum_probs=30.1
Q ss_pred CCceeecCccccccccccccccCCCCcccc-cCCCCccccccccc
Q 006644 111 ESKIQCVDPRCLVQQHISCVIIPEKPMEEI-RLLPPLFFCETCRI 154 (637)
Q Consensus 111 ~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~-p~~p~~f~C~~CRL 154 (637)
..|++|.. |+.|.|..|+.++...+ + ...++.|.|+.|+=
T Consensus 73 ~~m~~C~~--C~~~~H~~C~~~~~~~~--~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 73 KKLMECCI--CNEIVHPGCLQMDGEGL--LNEELPNCWECPKCYQ 113 (117)
T ss_dssp GSCEEETT--TCCEECGGGCCSCCCCE--ECSSSSSEEECTTTC-
T ss_pred cceEEeee--cCCeEECCCCCCCcccc--ccccCCCCeECCCCcC
Confidence 45899998 99999999998754321 1 34567899999984
No 117
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=53.06 E-value=5.9 Score=31.16 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=29.9
Q ss_pred cCCCCccccccccCC-CCcCcc-cccCHHHHHHHHccCCccccCCCCCCCC
Q 006644 348 RCPMSGSRIRVAGRF-KPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 348 ~CPls~~ri~~P~Rg-~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
.|++-+.+.+.++-- ..|.|+ -|++=..-+. + ..+.||+|.+.+.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK--K--RNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH--H--TTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH--H--cCCcCCCcCcchh
Confidence 488888777776532 379998 4665443322 2 3478999998873
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=52.72 E-value=3.9 Score=35.63 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.4
Q ss_pred ecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCCCCee
Q 006644 347 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 401 (637)
Q Consensus 347 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~dL~ 401 (637)
+.||+-...++.|. ....|.|.-|++ +..|+.. ...||+|.+.+..++|+
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----CCCCCCCCCcCChhcce
Confidence 45888888887763 345799998775 4566643 24899999998877664
No 119
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=51.33 E-value=20 Score=33.93 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=39.2
Q ss_pred chhHHHHHHHHhh-cChHHHHHHHHHcCCCCCCChHHHHHHHHHhc
Q 006644 3 TDLVASSKGKLVN-FRMKELKDVLTKLGLPKQGKKQDLVDRIFHQL 47 (637)
Q Consensus 3 ~~~~~~~k~~l~s-FRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL 47 (637)
++++-.+|++|.. ....||+.+|..=+..-+|-+.+|++|+...+
T Consensus 28 ~~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm 73 (160)
T 2riq_A 28 NDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGM 73 (160)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4677788999975 99999999999999888899999999987654
No 120
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=50.58 E-value=12 Score=35.54 Aligned_cols=44 Identities=20% Similarity=0.455 Sum_probs=32.7
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
+|+. .+.++-|.. |....|..|+..+. ..+| ...++|+.|+-..
T Consensus 9 ~C~~---~g~ll~Cd~--C~~~~H~~C~~p~l---~~~p--~~~W~C~~C~~~~ 52 (184)
T 3o36_A 9 VCQN---GGELLCCEK--CPKVFHLSCHVPTL---TNFP--SGEWICTFCRDLS 52 (184)
T ss_dssp TTCC---CSSCEECSS--SSCEECTTTSSSCC---SSCC--SSCCCCTTTSCSS
T ss_pred cCCC---CCeeeecCC--CCcccCccccCCCC---CCCC--CCCEECccccCcc
Confidence 5663 366999998 99999999997643 2333 2479999999753
No 121
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.51 E-value=2.2 Score=33.52 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=31.7
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE 398 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~ 398 (637)
.+.|||-+..+.. ....|.|.-|. .=+.... .....||+|.+.+...
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~--~Ci~~~~--~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQ--KCIDKWS--DRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECH--HHHHHSS--CCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccH--HHHHHHH--HCcCcCCCcCCcccCC
Confidence 5679998888776 55679998543 3332221 2567899998777543
No 122
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=49.42 E-value=16 Score=33.22 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=30.2
Q ss_pred HHhhcChHHHHHHHHHcCCCCCC--ChHHHHHHHHHh
Q 006644 12 KLVNFRMKELKDVLTKLGLPKQG--KKQDLVDRIFHQ 46 (637)
Q Consensus 12 ~l~sFRv~ELq~lL~~lg~~KsG--rK~eL~~R~L~l 46 (637)
.|...-+.||+.+...+|+.... +|+||+.++|.-
T Consensus 5 eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~ 41 (130)
T 1a62_A 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQ 41 (130)
T ss_dssp HHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHH
Confidence 34677899999999999999887 999999888763
No 123
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=47.91 E-value=8.8 Score=37.18 Aligned_cols=44 Identities=18% Similarity=0.411 Sum_probs=32.6
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
+|+. .+.+|-|.. |....|..|+..+. ..+| ...++|+.|+-..
T Consensus 12 ~C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l---~~~p--~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 12 VCQN---GGDLLCCEK--CPKVFHLTCHVPTL---LSFP--SGDWICTFCRDIG 55 (207)
T ss_dssp TTCC---CEEEEECSS--SSCEECTTTSSSCC---SSCC--SSCCCCTTTSCSS
T ss_pred CCCC---CCceEEcCC--CCCccCCccCCCCC---CCCC--CCCEEeCceeCcc
Confidence 5653 356999998 99999999997643 2333 3579999999753
No 124
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=47.50 E-value=5.4 Score=42.09 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=33.9
Q ss_pred EEeecCCCCccccccccCCCCcCcc-cccCHHHHHHHHccCCccccCCCCCCCC
Q 006644 344 IVNLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 344 ~vsL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
.-.+.||+-+..+..|+.- .|.|. -|.+-..-+ +.||+|...+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~--------~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL--------RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC--------SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC--------CcCCCCCCCcc
Confidence 3458899999999988876 89998 676553311 79999998764
No 125
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.12 E-value=16 Score=31.74 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=32.0
Q ss_pred cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 006644 103 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 153 (637)
Q Consensus 103 ~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CR 153 (637)
+|+..-....+|.|.. |....|..|+.+...+ .....++|+.|+
T Consensus 12 ~C~~~g~~~~ll~C~~--C~~~~H~~Cl~~~~~~-----~~~~~W~C~~C~ 55 (111)
T 2ysm_A 12 VCDSPGDLLDQFFCTT--CGQHYHGMCLDIAVTP-----LKRAGWQCPECK 55 (111)
T ss_dssp TTCCCCCTTTSEECSS--SCCEECTTTTTCCCCT-----TTSTTCCCTTTC
T ss_pred CCCCCCCCcCCeECCC--CCCCcChHHhCCcccc-----ccccCccCCcCC
Confidence 5766544456899987 9999999999876532 223578888776
No 126
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=46.06 E-value=9.9 Score=31.71 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=28.7
Q ss_pred eecCCCCcccccc--ccCCCCcCcccccC-HHHHHHHHccCCccccCCCCCCCCC
Q 006644 346 NLRCPMSGSRIRV--AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 397 (637)
Q Consensus 346 sL~CPls~~ri~~--P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 397 (637)
...|||-+..+.. ..+...|.|.-|++ +..|+. + .-.||+|.+.+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ---K--SGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT---T--TCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH---c--CCcCcCcCccCCC
Confidence 3458888766654 23334599975553 344442 2 2489999987754
No 127
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.19 E-value=13 Score=31.55 Aligned_cols=51 Identities=16% Similarity=0.398 Sum_probs=34.5
Q ss_pred cCCCCC--CCCCceeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 006644 103 PCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 156 (637)
Q Consensus 103 ~C~ssl--~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~~ 156 (637)
+|+..- ..+.+|.|.. |....|..|+..+.... .+..-...++|+.|+...
T Consensus 21 vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~-~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 21 VCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDK-EVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp SSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHH-HHHCTTCCCCCHHHHHHH
T ss_pred CCCCCCCCCCCceEECCC--CCCeEcCccCCCccccc-ccCCCCCCeeCccccchh
Confidence 566542 3468999998 99999999998654210 000123578999998753
No 128
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=44.69 E-value=5.4 Score=32.84 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=28.7
Q ss_pred ecCCCCccccccccCCCCcCcc-cccCHHHHHHHHccCCccccCCCCCCCC
Q 006644 347 LRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 347 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
+.|++-+.....|+- ..|.|. -|++-.. ..|.||+|.+.+.
T Consensus 19 ~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCC
T ss_pred CEeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhh
Confidence 458888887777654 479998 5654332 2379999998774
No 129
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.16 E-value=13 Score=29.64 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=27.6
Q ss_pred ecCCCCccccccccCCCCcCcc-cccCHHHHHHHHccCCccccCCCCCCCC
Q 006644 347 LRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 396 (637)
Q Consensus 347 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 396 (637)
..|++-+.+...++ ...|.|+ -|.+-.. ..++||+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVNWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCCCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCcCcCCCCEE-EECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 45888777665432 3578888 6665544 1389999998773
No 130
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=44.02 E-value=7.5 Score=26.07 Aligned_cols=16 Identities=44% Similarity=0.574 Sum_probs=12.2
Q ss_pred CCCCCcEEEecCCCcC
Q 006644 561 LIGDTDIIVLSDSEED 576 (637)
Q Consensus 561 ~~~~~~~~~lsds~~~ 576 (637)
+..--+|||||||+..
T Consensus 9 qcdP~evivlsds~~~ 24 (26)
T 2kqs_B 9 QCDPEEIIVLSDSDXX 24 (26)
T ss_pred cCCcceEEEccccccc
Confidence 4455689999999864
No 131
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=41.24 E-value=26 Score=29.96 Aligned_cols=45 Identities=18% Similarity=0.557 Sum_probs=32.9
Q ss_pred cc-cCCCCCCCCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 101 FC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 101 rC-~C~ssl~~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
.| +|+. .+.+|-|.. |....|..|+..+. ..+|. ..++|+.|+..
T Consensus 27 ~C~vC~~---~g~LL~CD~--C~~~fH~~Cl~PpL---~~~P~--g~W~C~~C~~~ 72 (88)
T 1fp0_A 27 ICRVCQK---PGDLVMCNQ--CEFCFHLDCHLPAL---QDVPG--EEWSCSLCHVL 72 (88)
T ss_dssp CCSSSCS---SSCCEECTT--SSCEECTTSSSTTC---CCCCS--SSCCCCSCCCC
T ss_pred cCcCcCC---CCCEEECCC--CCCceecccCCCCC---CCCcC--CCcCCccccCC
Confidence 44 5654 357999998 99999999996543 23333 57899999864
No 132
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=40.99 E-value=2.9 Score=33.27 Aligned_cols=15 Identities=27% Similarity=1.001 Sum_probs=11.5
Q ss_pred HccCCccccCCCCCC
Q 006644 380 NQRTRKWQCPICMKN 394 (637)
Q Consensus 380 n~~~~~W~CPiC~k~ 394 (637)
....++|+||+|+..
T Consensus 28 ~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 28 DYRAKLWACNFCYQR 42 (59)
T ss_dssp EGGGTEEECSSSCCE
T ss_pred ECCCCEEEcccCCCc
Confidence 345678999999754
No 133
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=40.81 E-value=39 Score=30.42 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=33.6
Q ss_pred HHHHhhcChHHHHHHHHHcCCCCCC--ChHHHHHHHHHhc
Q 006644 10 KGKLVNFRMKELKDVLTKLGLPKQG--KKQDLVDRIFHQL 47 (637)
Q Consensus 10 k~~l~sFRv~ELq~lL~~lg~~KsG--rK~eL~~R~L~lL 47 (637)
+..|+..++++|+.-|..-+.+..| .|.||++=+|.-.
T Consensus 73 ~~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~~~ 112 (120)
T 1y02_A 73 REELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQ 112 (120)
T ss_dssp HHHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTC
T ss_pred HHHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHhcC
Confidence 5779999999999999999999999 5899999777654
No 134
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=40.70 E-value=19 Score=34.56 Aligned_cols=39 Identities=15% Similarity=0.483 Sum_probs=29.8
Q ss_pred CCCceeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 006644 110 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 155 (637)
Q Consensus 110 ~~~~iqC~~~~C~~~qH~~C~~~~~kp~~~~p~~p~~f~C~~CRL~ 155 (637)
.+.++-|.. |....|..|+..+.+ .+| ...++|+.|+..
T Consensus 11 ~g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 11 PGDLVMCNQ--CEFCFHLDCHLPALQ---DVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CSSCCCCTT--TCCBCCSTTSTTCCS---SCC--CTTCCTTTTSCS
T ss_pred CCceeECCC--CCchhccccCCCCcc---cCC--CCCCCCcCccCC
Confidence 356999998 999999999975432 233 357899999975
No 135
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.76 E-value=8.3 Score=29.22 Aligned_cols=12 Identities=33% Similarity=1.151 Sum_probs=9.3
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 446999999854
No 136
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=36.33 E-value=9.4 Score=31.93 Aligned_cols=10 Identities=60% Similarity=1.713 Sum_probs=8.8
Q ss_pred CCccccCCCC
Q 006644 383 TRKWQCPICM 392 (637)
Q Consensus 383 ~~~W~CPiC~ 392 (637)
..+|.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 4689999998
No 137
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=34.47 E-value=14 Score=39.78 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=35.3
Q ss_pred eecCCCCccccccccCCCCcCcccccCH-HHHHHHHccCCccccCCCCCCCCCCC
Q 006644 346 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLED 399 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~d 399 (637)
.+.|||-...+..|+. ..|.|.-|.+- ..|+.. ..-.||+|.+.+....
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCce
Confidence 3689999999988866 57999877643 344431 3458999998886543
No 138
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=33.33 E-value=4.7 Score=34.28 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=13.5
Q ss_pred cccCCCCCCCCCCCee
Q 006644 386 WQCPICMKNYSLEDLI 401 (637)
Q Consensus 386 W~CPiC~k~~~~~dL~ 401 (637)
-+||+|++.+.+++|+
T Consensus 9 ~~~PlCG~~L~W~eLI 24 (95)
T 2k5c_A 9 AKCPICGSPLKWEELI 24 (95)
T ss_dssp EECSSSCCEECHHHHH
T ss_pred ccCCcCCCccCHHHHH
Confidence 5899999999887664
No 139
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.89 E-value=13 Score=29.05 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=9.4
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 457999999854
No 140
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=30.98 E-value=59 Score=32.96 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcChHHHHHHHHHcCCCCCCChHHHHHHHHHhc
Q 006644 6 VASSKGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQL 47 (637)
Q Consensus 6 ~~~~k~~l~sFRv~ELq~lL~~lg~~KsGrK~eL~~R~L~lL 47 (637)
++.+..+++...+.||+..|..+|++..|.|..|..|+-...
T Consensus 19 ~~~~~~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~ 60 (299)
T 1zbh_A 19 IAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYY 60 (299)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred HHHhhchhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Confidence 566777888888999999999999999999999987755443
No 141
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=30.63 E-value=14 Score=28.52 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=9.5
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999854
No 142
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=30.47 E-value=16 Score=28.57 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.5
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 143
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=30.27 E-value=16 Score=28.19 Aligned_cols=12 Identities=33% Similarity=1.248 Sum_probs=9.4
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 347999999854
No 144
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.88 E-value=10 Score=31.76 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=37.7
Q ss_pred eecCCCCccccccccCC--CCcCcccccC-HHHHHHHH--ccC-CccccCC--CCCC--CCCC
Q 006644 346 NLRCPMSGSRIRVAGRF--KPCVHTGCFD-LETFVELN--QRT-RKWQCPI--CMKN--YSLE 398 (637)
Q Consensus 346 sL~CPls~~ri~~P~Rg--~~C~HlQCFD-l~~fL~~n--~~~-~~W~CPi--C~k~--~~~~ 398 (637)
.+.|||-+..+..|.-. ..|.|.-|.+ +..|++.. +.. ...+||. |... +.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 35699998888777543 3699998875 67787764 222 4589999 9988 5544
No 145
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.25 E-value=18 Score=30.62 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=9.3
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 58 PddW~CPvCga~ 69 (81)
T 2kn9_A 58 PDDWSCPDCGAA 69 (81)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 347999999854
No 146
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.09 E-value=16 Score=29.89 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=9.5
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 147
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=27.68 E-value=21 Score=31.41 Aligned_cols=45 Identities=33% Similarity=0.671 Sum_probs=33.4
Q ss_pred cCCCCccccccccCCCCcCcccccCHHHHHHHHccCCccccCCCCCCC
Q 006644 348 RCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNY 395 (637)
Q Consensus 348 ~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~ 395 (637)
-|+.-...|.+=+|-..|+|.-|+|-..-.. +...-.||.|+.++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~---~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHE---KKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHH---HTTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHH---hccCCCCcCcCCee
Confidence 3777778888889999999998988754432 23334799998665
No 148
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.71 E-value=24 Score=30.18 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=9.5
Q ss_pred CCccccCCCCCC
Q 006644 383 TRKWQCPICMKN 394 (637)
Q Consensus 383 ~~~W~CPiC~k~ 394 (637)
...|.||+|+..
T Consensus 66 PddW~CPvCga~ 77 (87)
T 1s24_A 66 PDDWCCPDCGAT 77 (87)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCCCCCCCCC
Confidence 457999999854
No 149
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.42 E-value=36 Score=20.15 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.4
Q ss_pred ccccCCCCCCCCC
Q 006644 385 KWQCPICMKNYSL 397 (637)
Q Consensus 385 ~W~CPiC~k~~~~ 397 (637)
.+.|+.|++....
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 4789999988754
No 150
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.23 E-value=38 Score=21.88 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=11.2
Q ss_pred CccccCCCCCCCCC
Q 006644 384 RKWQCPICMKNYSL 397 (637)
Q Consensus 384 ~~W~CPiC~k~~~~ 397 (637)
..++|++|++.+.-
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 46999999988753
No 151
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=21.15 E-value=40 Score=29.35 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCcCcccccCHHHHHHHHccCCccccCCCCCCCCC
Q 006644 363 KPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSL 397 (637)
Q Consensus 363 ~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 397 (637)
..|.|. |-..=...--.+ .-.||+|.+...+
T Consensus 71 ~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 71 GVCNHA--FHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp ETTSCE--EEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred cccCcE--ECHHHHHHHHHc--CCcCcCCCCccee
Confidence 468887 433333322222 3579999987654
No 152
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=20.80 E-value=29 Score=23.20 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=10.4
Q ss_pred cccCCCCCCcccc
Q 006644 618 DGPFSFPRQPRSV 630 (637)
Q Consensus 618 ~~~~~~~~~~~~~ 630 (637)
++||+||-||-.-
T Consensus 6 ~~P~~~Pg~~~an 18 (26)
T 2pv9_C 6 PNPRGYPGKFCAN 18 (26)
T ss_dssp CEECSCTTTTCSC
T ss_pred CCCccCCCCccCC
Confidence 6899999998543
No 153
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.67 E-value=28 Score=23.77 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=9.6
Q ss_pred CccccCCCCCCC
Q 006644 384 RKWQCPICMKNY 395 (637)
Q Consensus 384 ~~W~CPiC~k~~ 395 (637)
+++.||+|...+
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 578999998654
No 154
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.13 E-value=39 Score=20.13 Aligned_cols=13 Identities=15% Similarity=0.861 Sum_probs=10.2
Q ss_pred ccccCCCCCCCCC
Q 006644 385 KWQCPICMKNYSL 397 (637)
Q Consensus 385 ~W~CPiC~k~~~~ 397 (637)
.+.|++|++....
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4799999987643
No 155
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.10 E-value=43 Score=19.98 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.3
Q ss_pred ccccCCCCCCCCC
Q 006644 385 KWQCPICMKNYSL 397 (637)
Q Consensus 385 ~W~CPiC~k~~~~ 397 (637)
.++|++|++.+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4799999988754
Done!