BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006645
(637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%)
Query: 25 FDGSPNSSAKELTSKFSNDSXXXXXXXXXXXTVGPCNVPKPSSWSPVEQSKWKSWQGLGN 84
FD + + T SND TVG CN PKP E+ KW++W L
Sbjct: 14 FDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRG 73
Query: 85 MATTEAMRLFVKILEEEDPGW 105
M+T A +VK+L+ P W
Sbjct: 74 MSTESAKEAYVKLLDTLAPSW 94
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 57 VGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMRLFVKILEEEDPGW 105
VG CN PKPS + + KW++W+ LG+ + ++AM+ ++ ++++ DPGW
Sbjct: 43 VGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGW 91
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 56 TVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMRLFV 95
T+GPC VP+P W P+ + KW +W LG M+ EAM ++
Sbjct: 46 TMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYI 85
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 56 TVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMRLFV----KILE 99
T GPC + +P W P+ + KW +W LG+M EAM +V KI+E
Sbjct: 62 TEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIE 109
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 6 ASSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSXXXXXXXXXXXTVGPCNVPKP 65
SSG + R AS F+ S N K L N+ T GPCN+PKP
Sbjct: 1 GSSGSSGMNRTAMRASQKDFENSMNQ-VKLLKKDPGNEVKLKLYALYKQATEGPCNMPKP 59
Query: 66 SSWSPVEQSKWKSWQGLGNMATTEAMRLFV 95
+ + ++KW +W LG++ A + +V
Sbjct: 60 GVFDLINKAKWDAWNALGSLPKEAARQNYV 89
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 56 TVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMRLFVKILEEEDPGW 105
T+G CN+ +PS+ +++ K+++W+ + N+ +A + +V I+ E P W
Sbjct: 38 TIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYW 87
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKA 230
DQW + G AR G V +Y GG L+ + D + W+ + A
Sbjct: 138 DQW---SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA 194
Query: 231 VAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290
S AG +L+ N + + G + + V+ ++++T SW+T+ +
Sbjct: 195 TKRSG-----------AGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240
Query: 291 GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350
P G T++ L G D SLL+ + D +W+ + ++G + R D
Sbjct: 241 TTPRCYVG---ATVLRGRLYAIAGYDGN-SLLSSIECYDPIIDSWEVVTSMG---TQRCD 293
Query: 351 HAAAVHAE 358
V E
Sbjct: 294 AGVCVLRE 301
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 308 SLVIFGGEDAK--RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFG 365
S+ + GG + K L+ + D + W E D + P H H + +I G
Sbjct: 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL---PYVVYGHTVLSHMDLVYVIGG 156
Query: 366 GGSHAACFNDLHVLDLQTMEW 386
GS C N + V D + EW
Sbjct: 157 KGSDRKCLNKMCVYDPKKFEW 177
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 21 SYAGFDGSPNSSAKELTSKFSNDSXXXXXXXXXXXTVGPCNVPKPSSWSPVEQSKWKSWQ 80
S A FD + K L +K ++D TVG N +P ++KW +W
Sbjct: 1 SQAEFDKAA-EEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWN 59
Query: 81 GLGNMATTEAMRLFVKILEE 100
L + +AM+ ++ +EE
Sbjct: 60 QLKGTSKEDAMKSYIDKVEE 79
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 24/171 (14%)
Query: 169 VYDQWIA-PPISGQRPKARYEHGAAVVQDKMYIYGGN--HNGRYLSDMHILDLRSWAWSK 225
V +W+ PP+ P AR G V DK+Y+ G L + D + WS+
Sbjct: 86 VSSEWVGLPPL----PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE 141
Query: 226 IQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS 285
++ L GH++I + + G T D +V +++ + W
Sbjct: 142 VK-------------NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188
Query: 286 TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWD 336
L P R V + +VI GG + L + DL+T W+
Sbjct: 189 DLAPMKTP---RSMFGVAIHKGKIVIAGGV-TEDGLSASVEAFDLKTNKWE 235
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 34 KELTSKFSNDSXXXXXXXXXXXTVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMRL 93
+ L +K S++ TVG N +P ++KW +W L + +AM+
Sbjct: 13 RHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKA 72
Query: 94 FVKILEE 100
++ +EE
Sbjct: 73 YINKVEE 79
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 21 SYAGFDGSPNSSAKELTSKFSNDSXXXXXXXXXXXTVGPCNVPKPSSWSPVEQSKWKSWQ 80
S A FD + K L +K +++ TVG N +P ++KW +W
Sbjct: 1 SQAEFDKAA-EEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWN 59
Query: 81 GLGNMATTEAMRLFVKILEE 100
L + +AM+ ++ +EE
Sbjct: 60 ELKGTSKEDAMKAYIDKVEE 79
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 294 PVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351
PV+R + T + L++ GG A L+D I D++T W I ++ R H
Sbjct: 437 PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS---HTRFRH 493
Query: 352 AAAVHAERYLLIFGG 366
+A + +LI GG
Sbjct: 494 SACSLPDGNVLILGG 508
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 34 KELTSKFSNDSXXXXXXXXXXXTVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMRL 93
+ L +K S++ TVG N +P ++KW +W L + +AM+
Sbjct: 14 RHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKA 73
Query: 94 FVKILEE 100
++ +EE
Sbjct: 74 YINKVEE 80
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 40/246 (16%)
Query: 169 VYDQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQA 228
V DQW + ++ R + R GAAV+ +Y GG LS + +++S W +
Sbjct: 85 VKDQWTS--VANMRDR-RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141
Query: 229 KAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ-VKVFDLQTCSWSTL 287
S+ L ++ G+ + + V+ ++ T W+ +
Sbjct: 142 MNTRRSSVGVGVV-------------GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188
Query: 288 KTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSP 347
+ R G V ++ L GG D + + + D T W ++ + +
Sbjct: 189 ---AEMSTRRSGAGVGVLNNLLYAVGGHDGPL-VRKSVEVYDPTTNAWRQVADMNM---- 240
Query: 348 RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ------QGEIPTPRAG 401
A V A LL GG +C +L ++E+ PT + T R+
Sbjct: 241 -CRRNAGVCAVNGLLYVVGGDDGSC-------NLASVEYYNPTTDKWTVVSSCMSTGRS- 291
Query: 402 HAGVTI 407
+AGVT+
Sbjct: 292 YAGVTV 297
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRG----GQSVTLVGTSLV 310
E K+ + G S + + +D +T SW T + S G + + G SL
Sbjct: 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSL- 159
Query: 311 IFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA 370
G + +LN + D T TW E+ P + V + + GG +
Sbjct: 160 ---GNNVSGRVLNSCEVYDPATETWTEL----CPMIEARKNHGLVFVKDKIFAVGGQNGL 212
Query: 371 ACFNDLHVLDLQTMEW 386
+++ D++ EW
Sbjct: 213 GGLDNVEYYDIKLNEW 228
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 35 ELTSKFSNDSXXXXXXXXXXXTVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMRLF 94
EL +K S D TVG + KP ++ ++ KW++W+ L + +A + +
Sbjct: 14 ELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEY 73
Query: 95 VKILEE 100
+ ++++
Sbjct: 74 IALVDQ 79
>pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
pdb|1Q2X|B Chain B, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
Length = 371
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 215 ILDLRSWAWSKIQAKAVAES--TESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267
ILD+ K+ AK A++ T++ AL G SLIPW +KLL G TKD
Sbjct: 198 ILDIER----KVTAKMRADNFPTDNFGAAL-----GGSLIPWIDKLLPETGQTKD 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,009,697
Number of Sequences: 62578
Number of extensions: 706629
Number of successful extensions: 1113
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 27
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)