Query 006645
Match_columns 637
No_of_seqs 551 out of 3256
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 12:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 1.9E-38 4.1E-43 298.5 20.4 256 184-457 12-285 (392)
2 PLN02193 nitrile-specifier pro 100.0 6.4E-37 1.4E-41 334.6 33.9 255 171-456 151-418 (470)
3 PLN02153 epithiospecifier prot 100.0 1.5E-36 3.3E-41 319.8 33.1 258 170-456 6-292 (341)
4 KOG4441 Proteins containing BT 100.0 8.7E-37 1.9E-41 337.5 29.5 252 162-457 298-555 (571)
5 PLN02193 nitrile-specifier pro 100.0 2.2E-35 4.7E-40 322.5 33.7 255 166-449 194-469 (470)
6 PLN02153 epithiospecifier prot 100.0 2.7E-35 5.9E-40 310.3 33.0 259 166-448 51-339 (341)
7 KOG0379 Kelch repeat-containin 100.0 9E-36 2E-40 324.6 27.6 263 169-459 43-312 (482)
8 KOG4693 Uncharacterized conser 100.0 3.3E-36 7.2E-41 283.3 19.5 236 172-435 55-312 (392)
9 PHA02713 hypothetical protein; 100.0 2.8E-35 6.2E-40 326.9 27.1 244 166-455 273-540 (557)
10 KOG1230 Protein containing rep 100.0 2.2E-34 4.8E-39 286.1 21.3 250 181-458 62-350 (521)
11 PHA03098 kelch-like protein; P 100.0 3.1E-32 6.7E-37 304.6 29.9 240 172-456 275-519 (534)
12 KOG4441 Proteins containing BT 100.0 4.9E-32 1.1E-36 299.7 25.6 233 182-456 272-507 (571)
13 TIGR03548 mutarot_permut cycli 100.0 3.7E-31 8E-36 276.8 26.6 226 172-436 52-314 (323)
14 KOG0379 Kelch repeat-containin 100.0 4E-31 8.6E-36 288.2 25.3 253 172-448 99-357 (482)
15 TIGR03548 mutarot_permut cycli 100.0 2.6E-30 5.6E-35 270.5 28.5 239 183-456 1-287 (323)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 2.9E-30 6.3E-35 272.9 27.4 234 171-446 41-344 (346)
17 PHA02790 Kelch-like protein; P 100.0 6.3E-30 1.4E-34 280.3 27.8 210 191-455 267-477 (480)
18 PRK14131 N-acetylneuraminic ac 100.0 7.2E-30 1.6E-34 272.2 27.0 241 171-452 62-372 (376)
19 KOG4152 Host cell transcriptio 100.0 2.2E-30 4.7E-35 262.8 18.7 258 172-458 18-312 (830)
20 TIGR03547 muta_rot_YjhT mutatr 100.0 7.2E-29 1.6E-33 262.2 27.9 256 181-482 3-330 (346)
21 PHA02713 hypothetical protein; 100.0 1.1E-29 2.4E-34 282.2 21.8 200 165-390 320-541 (557)
22 KOG4152 Host cell transcriptio 100.0 2.3E-29 5E-34 255.4 18.2 258 165-448 57-363 (830)
23 KOG1230 Protein containing rep 100.0 2E-29 4.4E-34 250.9 16.5 210 171-392 108-350 (521)
24 PHA03098 kelch-like protein; P 100.0 2.2E-28 4.8E-33 273.5 25.5 202 166-390 312-519 (534)
25 PTZ00458 acyl CoA binding prot 100.0 1.5E-29 3.3E-34 206.0 8.8 88 13-108 2-89 (90)
26 PRK14131 N-acetylneuraminic ac 100.0 2E-27 4.4E-32 253.3 26.8 263 172-482 18-352 (376)
27 cd00435 ACBP Acyl CoA binding 100.0 1.1E-28 2.4E-33 201.0 8.4 85 12-106 1-85 (85)
28 PHA02790 Kelch-like protein; P 100.0 1.2E-26 2.6E-31 254.4 25.5 188 165-390 287-478 (480)
29 PF00887 ACBP: Acyl CoA bindin 99.9 2E-27 4.3E-32 196.8 5.2 87 12-106 1-87 (87)
30 KOG0817 Acyl-CoA-binding prote 99.9 1.2E-26 2.6E-31 204.3 8.8 93 10-112 3-95 (142)
31 COG4281 ACB Acyl-CoA-binding p 99.9 8.4E-25 1.8E-29 164.3 6.8 84 12-105 2-85 (87)
32 COG3055 Uncharacterized protei 99.7 3.7E-16 8E-21 155.0 20.6 237 172-446 71-372 (381)
33 KOG2437 Muskelin [Signal trans 99.6 8.1E-16 1.8E-20 157.2 7.4 260 171-455 239-541 (723)
34 COG3055 Uncharacterized protei 99.6 1.1E-13 2.4E-18 137.6 18.9 265 181-483 32-359 (381)
35 KOG2437 Muskelin [Signal trans 99.4 1E-13 2.2E-18 142.1 7.0 211 219-448 237-471 (723)
36 KOG3878 Protein involved in ma 99.2 2.3E-11 5E-16 118.4 6.3 94 8-108 28-124 (469)
37 PLN02772 guanylate kinase 99.1 6.4E-10 1.4E-14 115.5 11.7 90 293-384 21-110 (398)
38 PF13964 Kelch_6: Kelch motif 99.0 5.3E-10 1.2E-14 82.3 6.1 45 185-229 1-46 (50)
39 PF13964 Kelch_6: Kelch motif 99.0 5.9E-10 1.3E-14 82.1 6.1 50 245-297 1-50 (50)
40 PLN02772 guanylate kinase 99.0 3.3E-09 7.2E-14 110.2 11.9 89 242-333 21-110 (398)
41 PF13415 Kelch_3: Galactose ox 98.9 5.1E-09 1.1E-13 76.7 5.9 48 306-356 1-49 (49)
42 PF13415 Kelch_3: Galactose ox 98.8 9.2E-09 2E-13 75.3 6.0 47 358-407 1-49 (49)
43 PF01344 Kelch_1: Kelch motif; 98.8 8.5E-09 1.8E-13 74.8 5.6 45 185-229 1-46 (47)
44 PF07646 Kelch_2: Kelch motif; 98.8 1.1E-08 2.3E-13 74.9 6.0 45 185-229 1-48 (49)
45 PF01344 Kelch_1: Kelch motif; 98.8 1.4E-08 3.1E-13 73.6 5.9 45 245-289 1-45 (47)
46 PF07646 Kelch_2: Kelch motif; 98.7 3.2E-08 6.9E-13 72.4 6.3 46 296-341 1-48 (49)
47 PF13418 Kelch_4: Galactose ox 98.6 3.1E-08 6.6E-13 72.5 3.9 44 347-390 1-45 (49)
48 PF13418 Kelch_4: Galactose ox 98.6 3.5E-08 7.7E-13 72.2 4.2 45 245-289 1-46 (49)
49 PF13854 Kelch_5: Kelch motif 98.6 7E-08 1.5E-12 68.0 5.6 40 182-221 1-42 (42)
50 PF13854 Kelch_5: Kelch motif 98.5 2.4E-07 5.3E-12 65.2 5.6 41 293-333 1-42 (42)
51 PF03089 RAG2: Recombination a 98.4 1.6E-05 3.4E-10 77.5 17.0 165 257-437 40-231 (337)
52 PF07250 Glyoxal_oxid_N: Glyox 98.4 1.7E-05 3.8E-10 78.1 17.7 147 213-391 48-207 (243)
53 smart00612 Kelch Kelch domain. 98.3 8E-07 1.7E-11 64.0 4.4 47 197-256 1-47 (47)
54 smart00612 Kelch Kelch domain. 98.3 1.4E-06 3E-11 62.8 5.1 46 360-408 1-46 (47)
55 PF03089 RAG2: Recombination a 98.1 4.3E-05 9.4E-10 74.5 12.2 110 308-435 40-174 (337)
56 TIGR01640 F_box_assoc_1 F-box 97.8 0.0083 1.8E-07 59.4 23.2 161 211-390 14-185 (230)
57 PF07250 Glyoxal_oxid_N: Glyox 97.6 0.0022 4.8E-08 63.3 15.6 86 274-368 48-138 (243)
58 TIGR01640 F_box_assoc_1 F-box 97.5 0.011 2.4E-07 58.6 19.2 154 209-384 68-230 (230)
59 PF09726 Macoilin: Transmembra 97.1 0.0073 1.6E-07 68.8 14.3 57 513-569 459-515 (697)
60 PF12718 Tropomyosin_1: Tropom 96.7 0.05 1.1E-06 49.3 13.9 73 516-588 16-98 (143)
61 PF13360 PQQ_2: PQQ-like domai 96.6 0.86 1.9E-05 44.8 26.9 154 191-388 32-199 (238)
62 COG4372 Uncharacterized protei 96.6 0.055 1.2E-06 55.2 13.8 26 589-614 233-258 (499)
63 PF12718 Tropomyosin_1: Tropom 96.5 0.057 1.2E-06 48.9 12.6 22 589-610 75-96 (143)
64 PRK11637 AmiB activator; Provi 96.5 0.038 8.3E-07 60.1 13.5 42 524-565 50-91 (428)
65 PF07888 CALCOCO1: Calcium bin 96.4 0.087 1.9E-06 57.5 15.2 63 525-587 175-237 (546)
66 PF07893 DUF1668: Protein of u 96.4 0.5 1.1E-05 49.8 20.6 121 191-339 72-215 (342)
67 PF12768 Rax2: Cortical protei 96.3 0.21 4.5E-06 50.8 16.9 122 200-340 2-130 (281)
68 PF09726 Macoilin: Transmembra 96.3 0.051 1.1E-06 62.0 13.7 97 514-613 418-514 (697)
69 PRK11637 AmiB activator; Provi 96.3 0.053 1.2E-06 59.0 13.3 60 526-585 45-104 (428)
70 PRK11138 outer membrane biogen 96.2 1.8 4E-05 46.4 24.3 159 187-388 112-282 (394)
71 PF12768 Rax2: Cortical protei 96.1 0.067 1.4E-06 54.3 11.8 123 259-391 2-130 (281)
72 PRK11138 outer membrane biogen 96.1 2.1 4.5E-05 46.1 24.2 177 172-388 47-231 (394)
73 PRK09039 hypothetical protein; 96.1 0.1 2.2E-06 54.8 13.4 36 553-588 120-155 (343)
74 PF08317 Spc7: Spc7 kinetochor 95.9 0.23 5.1E-06 51.8 15.3 25 591-615 241-265 (325)
75 PF07893 DUF1668: Protein of u 95.9 0.24 5.3E-06 52.1 15.5 123 249-389 69-214 (342)
76 PF04156 IncA: IncA protein; 95.9 0.29 6.2E-06 46.9 14.8 20 591-610 162-181 (191)
77 TIGR03319 YmdA_YtgF conserved 95.8 0.18 3.8E-06 55.9 14.7 17 548-564 75-91 (514)
78 TIGR03300 assembly_YfgL outer 95.7 3.5 7.6E-05 43.9 24.6 150 189-388 59-216 (377)
79 PF11180 DUF2968: Protein of u 95.7 0.25 5.3E-06 46.2 12.7 35 589-623 156-190 (192)
80 PRK12704 phosphodiesterase; Pr 95.7 0.21 4.4E-06 55.5 14.6 18 548-565 81-98 (520)
81 PF15619 Lebercilin: Ciliary p 95.7 0.49 1.1E-05 45.2 15.1 27 590-616 167-193 (194)
82 COG2433 Uncharacterized conser 95.6 0.17 3.7E-06 55.1 13.0 50 517-566 418-467 (652)
83 KOG0646 WD40 repeat protein [G 95.6 2.2 4.7E-05 45.2 20.5 149 188-369 84-239 (476)
84 PF09304 Cortex-I_coil: Cortex 95.6 0.68 1.5E-05 38.9 13.6 67 522-588 10-76 (107)
85 PRK09039 hypothetical protein; 95.6 0.26 5.7E-06 51.7 14.1 23 591-613 141-163 (343)
86 COG1579 Zn-ribbon protein, pos 95.5 0.41 8.9E-06 46.9 14.1 21 592-612 122-142 (239)
87 COG4372 Uncharacterized protei 95.5 0.36 7.7E-06 49.5 13.9 26 589-614 254-279 (499)
88 COG3074 Uncharacterized protei 95.5 0.25 5.4E-06 37.6 9.6 63 524-586 7-69 (79)
89 PF13851 GAS: Growth-arrest sp 95.4 0.64 1.4E-05 44.8 14.9 49 515-563 28-83 (201)
90 KOG0804 Cytoplasmic Zn-finger 95.4 0.36 7.7E-06 50.7 13.7 11 440-450 267-277 (493)
91 PTZ00421 coronin; Provisional 95.3 5.9 0.00013 43.9 28.4 156 196-388 138-296 (493)
92 KOG0804 Cytoplasmic Zn-finger 95.3 0.41 8.8E-06 50.3 13.8 12 599-610 433-444 (493)
93 PF07888 CALCOCO1: Calcium bin 95.3 0.52 1.1E-05 51.6 15.2 32 522-553 151-182 (546)
94 PRK10884 SH3 domain-containing 95.2 0.23 5.1E-06 47.8 11.3 13 575-587 137-149 (206)
95 TIGR03866 PQQ_ABC_repeats PQQ- 95.2 3.9 8.5E-05 41.2 21.8 144 197-386 2-149 (300)
96 PF04111 APG6: Autophagy prote 95.1 0.31 6.8E-06 50.4 12.9 23 592-614 111-133 (314)
97 smart00295 B41 Band 4.1 homolo 95.1 0.042 9.1E-07 53.2 6.1 71 36-107 113-204 (207)
98 PF04111 APG6: Autophagy prote 95.0 0.23 5E-06 51.4 11.5 20 589-608 115-134 (314)
99 PF10186 Atg14: UV radiation r 94.9 0.62 1.3E-05 48.0 14.6 9 619-628 173-181 (302)
100 KOG2055 WD40 repeat protein [G 94.9 1 2.2E-05 47.5 15.4 154 195-386 224-378 (514)
101 TIGR03300 assembly_YfgL outer 94.9 3.4 7.3E-05 44.0 20.5 153 190-388 140-305 (377)
102 cd00216 PQQ_DH Dehydrogenases 94.8 8.1 0.00018 42.9 24.8 142 172-339 42-193 (488)
103 PF11559 ADIP: Afadin- and alp 94.8 0.99 2.1E-05 41.4 14.0 39 525-563 56-94 (151)
104 PF15035 Rootletin: Ciliary ro 94.8 0.51 1.1E-05 44.6 12.1 59 556-614 60-122 (182)
105 PF00373 FERM_M: FERM central 94.8 0.066 1.4E-06 47.3 6.0 81 15-106 14-122 (126)
106 cd00094 HX Hemopexin-like repe 94.8 2.8 6E-05 40.2 17.7 157 190-385 11-178 (194)
107 PRK04863 mukB cell division pr 94.7 0.52 1.1E-05 58.5 15.2 14 516-529 316-329 (1486)
108 COG1579 Zn-ribbon protein, pos 94.7 1 2.2E-05 44.2 14.3 15 569-583 102-116 (239)
109 PF06785 UPF0242: Uncharacteri 94.7 0.78 1.7E-05 46.2 13.5 25 575-599 150-174 (401)
110 KOG0161 Myosin class II heavy 94.7 0.39 8.5E-06 60.2 14.0 32 64-95 313-344 (1930)
111 PF04849 HAP1_N: HAP1 N-termin 94.7 0.78 1.7E-05 46.5 13.7 25 517-541 163-187 (306)
112 PF00261 Tropomyosin: Tropomyo 94.6 1.2 2.7E-05 44.1 15.1 40 572-611 171-214 (237)
113 PF08614 ATG16: Autophagy prot 94.6 0.16 3.5E-06 48.8 8.4 68 519-586 79-146 (194)
114 TIGR02800 propeller_TolB tol-p 94.5 4.6 9.9E-05 43.5 20.9 147 211-390 214-362 (417)
115 COG4942 Membrane-bound metallo 94.5 0.64 1.4E-05 49.2 13.2 52 539-590 56-107 (420)
116 COG2433 Uncharacterized conser 94.5 0.67 1.5E-05 50.7 13.4 82 533-614 427-508 (652)
117 smart00787 Spc7 Spc7 kinetocho 94.4 1.3 2.8E-05 45.7 15.1 27 589-615 234-260 (312)
118 PF11559 ADIP: Afadin- and alp 94.4 1.9 4.2E-05 39.5 14.9 56 533-588 57-112 (151)
119 KOG1029 Endocytic adaptor prot 94.4 0.62 1.3E-05 52.0 13.0 10 69-78 11-20 (1118)
120 PF06818 Fez1: Fez1; InterPro 94.4 0.8 1.7E-05 43.5 12.2 93 515-610 11-103 (202)
121 PF00261 Tropomyosin: Tropomyo 94.3 1 2.3E-05 44.7 13.8 64 525-588 89-152 (237)
122 PF10473 CENP-F_leu_zip: Leuci 94.3 1.6 3.5E-05 39.1 13.4 24 538-561 55-78 (140)
123 PF08450 SGL: SMP-30/Gluconola 94.3 6 0.00013 39.2 19.5 164 195-390 51-221 (246)
124 PF10473 CENP-F_leu_zip: Leuci 94.2 2.7 5.9E-05 37.7 14.7 75 516-590 26-100 (140)
125 PF08317 Spc7: Spc7 kinetochor 94.2 0.71 1.5E-05 48.2 12.8 12 595-606 252-263 (325)
126 PF08450 SGL: SMP-30/Gluconola 94.2 4.7 0.0001 40.0 18.5 148 195-383 11-165 (246)
127 PRK00409 recombination and DNA 94.1 0.69 1.5E-05 54.1 13.7 44 510-553 516-559 (782)
128 PF13851 GAS: Growth-arrest sp 94.0 1.8 3.9E-05 41.7 14.3 49 540-588 84-132 (201)
129 PF11932 DUF3450: Protein of u 94.0 1.5 3.3E-05 44.0 14.4 13 576-588 83-95 (251)
130 KOG2055 WD40 repeat protein [G 93.9 0.73 1.6E-05 48.5 11.9 149 195-382 268-417 (514)
131 PF04849 HAP1_N: HAP1 N-termin 93.9 1.2 2.6E-05 45.2 13.1 68 535-602 213-284 (306)
132 smart00787 Spc7 Spc7 kinetocho 93.8 1.5 3.2E-05 45.3 14.2 17 592-608 244-260 (312)
133 PF00769 ERM: Ezrin/radixin/mo 93.8 1.1 2.4E-05 44.7 12.9 40 574-613 79-122 (246)
134 KOG0995 Centromere-associated 93.8 0.93 2E-05 49.3 12.9 27 538-564 297-323 (581)
135 PF05096 Glu_cyclase_2: Glutam 93.7 4.9 0.00011 40.2 16.9 159 189-388 48-209 (264)
136 TIGR02168 SMC_prok_B chromosom 93.6 1 2.2E-05 55.7 15.1 7 427-433 646-652 (1179)
137 PF05335 DUF745: Protein of un 93.6 3.9 8.5E-05 38.8 15.3 31 583-613 140-170 (188)
138 PRK10361 DNA recombination pro 93.6 2.1 4.5E-05 46.5 15.1 9 616-624 199-207 (475)
139 PF09304 Cortex-I_coil: Cortex 93.5 2.7 5.8E-05 35.5 12.3 63 525-587 6-68 (107)
140 KOG1029 Endocytic adaptor prot 93.5 1.1 2.3E-05 50.2 12.9 18 39-56 9-26 (1118)
141 PRK09343 prefoldin subunit bet 93.5 2.6 5.6E-05 37.0 13.2 32 589-620 87-118 (121)
142 KOG0250 DNA repair protein RAD 93.5 1.6 3.4E-05 51.1 14.7 27 535-561 696-722 (1074)
143 PF10186 Atg14: UV radiation r 93.5 1.7 3.7E-05 44.7 14.2 41 539-579 60-100 (302)
144 PF06818 Fez1: Fez1; InterPro 93.4 1.8 4E-05 41.1 12.7 73 516-588 33-105 (202)
145 PRK04863 mukB cell division pr 93.4 1.4 2.9E-05 55.0 15.1 23 530-552 302-324 (1486)
146 TIGR01005 eps_transp_fam exopo 93.4 1.1 2.3E-05 52.8 13.9 90 514-603 288-385 (754)
147 PF11932 DUF3450: Protein of u 93.4 1.9 4E-05 43.3 13.8 59 527-585 41-99 (251)
148 TIGR03752 conj_TIGR03752 integ 93.4 0.83 1.8E-05 49.0 11.5 45 514-558 59-103 (472)
149 PRK15422 septal ring assembly 93.3 1.2 2.6E-05 35.2 9.4 41 524-564 7-47 (79)
150 PHA02562 46 endonuclease subun 93.3 1.5 3.2E-05 49.7 14.5 39 545-583 333-371 (562)
151 KOG0250 DNA repair protein RAD 93.2 1.6 3.4E-05 51.2 14.2 60 525-584 355-415 (1074)
152 COG4026 Uncharacterized protei 93.2 0.72 1.6E-05 43.8 9.4 52 535-586 135-186 (290)
153 PF11180 DUF2968: Protein of u 93.1 1.2 2.6E-05 41.7 10.8 74 534-610 111-184 (192)
154 TIGR01843 type_I_hlyD type I s 93.1 2 4.4E-05 46.5 14.8 13 598-610 250-262 (423)
155 PF12325 TMF_TATA_bd: TATA ele 93.0 2.6 5.6E-05 36.9 12.2 75 527-601 22-103 (120)
156 KOG3850 Predicted membrane pro 93.0 1.9 4.1E-05 44.4 12.8 8 55-62 15-22 (455)
157 PF07111 HCR: Alpha helical co 93.0 2.1 4.6E-05 47.7 14.2 64 519-582 519-583 (739)
158 PF05384 DegS: Sensor protein 92.9 5.9 0.00013 36.5 15.0 28 522-549 28-55 (159)
159 PF06637 PV-1: PV-1 protein (P 92.9 3.5 7.6E-05 42.5 14.6 99 521-620 285-396 (442)
160 PRK00178 tolB translocation pr 92.9 16 0.00035 39.6 21.7 146 211-390 223-371 (430)
161 KOG0971 Microtubule-associated 92.9 1.9 4.2E-05 49.1 13.8 18 573-590 458-475 (1243)
162 PRK04792 tolB translocation pr 92.9 15 0.00032 40.3 21.2 146 211-390 242-390 (448)
163 KOG2129 Uncharacterized conser 92.9 2.2 4.7E-05 44.4 13.1 15 574-588 257-271 (552)
164 PRK04922 tolB translocation pr 92.9 16 0.00034 39.9 21.3 147 210-390 227-376 (433)
165 COG4942 Membrane-bound metallo 92.8 3.8 8.3E-05 43.5 15.3 11 574-584 228-238 (420)
166 COG1322 Predicted nuclease of 92.8 3.1 6.8E-05 45.0 15.0 43 582-624 152-198 (448)
167 PF09738 DUF2051: Double stran 92.7 1.2 2.6E-05 45.5 11.3 60 535-594 112-171 (302)
168 PRK00409 recombination and DNA 92.6 2.1 4.6E-05 50.2 14.6 24 63-89 64-88 (782)
169 PF00038 Filament: Intermediat 92.5 2.8 6.1E-05 43.5 14.2 10 573-582 240-249 (312)
170 TIGR01069 mutS2 MutS2 family p 92.5 1.3 2.7E-05 51.9 12.6 24 63-89 61-85 (771)
171 TIGR02800 propeller_TolB tol-p 92.5 18 0.00038 39.0 22.5 117 255-390 200-318 (417)
172 KOG0612 Rho-associated, coiled 92.5 2.1 4.5E-05 50.7 13.8 56 554-609 492-547 (1317)
173 PF06785 UPF0242: Uncharacteri 92.5 2.8 6E-05 42.5 12.9 6 573-578 165-170 (401)
174 PF10234 Cluap1: Clusterin-ass 92.4 3 6.5E-05 41.7 13.3 40 533-572 174-213 (267)
175 PF06409 NPIP: Nuclear pore co 92.4 1.9 4.2E-05 41.3 11.2 73 549-621 127-207 (265)
176 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.4 7.8 0.00017 34.6 15.1 33 555-587 58-90 (132)
177 PF15619 Lebercilin: Ciliary p 92.3 2.8 6.1E-05 40.1 12.6 49 513-561 60-108 (194)
178 KOG1853 LIS1-interacting prote 92.1 3.1 6.6E-05 40.4 12.3 46 564-609 141-186 (333)
179 TIGR03007 pepcterm_ChnLen poly 92.1 2.2 4.8E-05 47.5 13.6 50 554-603 315-364 (498)
180 PRK13684 Ycf48-like protein; P 92.1 18 0.00038 38.0 19.7 172 172-390 120-296 (334)
181 KOG0161 Myosin class II heavy 92.0 2.5 5.5E-05 53.3 14.8 16 595-610 1007-1022(1930)
182 PF05667 DUF812: Protein of un 91.9 1.9 4E-05 48.6 12.5 33 80-112 24-56 (594)
183 TIGR03185 DNA_S_dndD DNA sulfu 91.9 1.9 4.1E-05 49.7 13.1 45 540-584 207-251 (650)
184 KOG4403 Cell surface glycoprot 91.9 1.2 2.6E-05 46.4 10.0 8 595-602 310-317 (575)
185 PF09755 DUF2046: Uncharacteri 91.8 5.6 0.00012 40.5 14.4 29 554-582 118-147 (310)
186 PF15070 GOLGA2L5: Putative go 91.8 3 6.4E-05 47.3 14.0 51 515-565 16-66 (617)
187 TIGR03752 conj_TIGR03752 integ 91.7 1.1 2.4E-05 48.0 10.0 18 593-610 122-139 (472)
188 PF08268 FBA_3: F-box associat 91.7 4 8.6E-05 36.2 12.3 87 252-340 2-89 (129)
189 KOG2991 Splicing regulator [RN 91.7 5.1 0.00011 39.0 13.2 57 510-566 104-160 (330)
190 PF07106 TBPIP: Tat binding pr 91.6 2.2 4.8E-05 39.9 11.0 16 573-588 119-134 (169)
191 TIGR01069 mutS2 MutS2 family p 91.6 3.2 7E-05 48.6 14.6 25 511-535 512-536 (771)
192 PF05667 DUF812: Protein of un 91.6 4.3 9.3E-05 45.8 15.0 33 515-547 329-361 (594)
193 KOG0980 Actin-binding protein 91.6 3.5 7.6E-05 47.1 13.9 6 334-339 176-181 (980)
194 COG1382 GimC Prefoldin, chaper 91.5 6.1 0.00013 34.3 12.4 25 591-615 88-112 (119)
195 CHL00118 atpG ATP synthase CF0 91.5 9.2 0.0002 35.2 14.8 52 515-566 47-98 (156)
196 PRK09174 F0F1 ATP synthase sub 91.5 7 0.00015 37.8 14.5 51 515-565 78-128 (204)
197 KOG3859 Septins (P-loop GTPase 91.5 3.9 8.5E-05 40.7 12.6 51 516-566 321-372 (406)
198 PF12217 End_beta_propel: Cata 91.5 16 0.00034 36.2 19.3 169 186-366 75-257 (367)
199 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.3 29 0.00062 39.0 24.2 130 188-338 62-198 (527)
200 PF12128 DUF3584: Protein of u 91.3 3 6.4E-05 51.7 14.6 48 516-563 616-663 (1201)
201 PF15290 Syntaphilin: Golgi-lo 91.3 2.4 5.1E-05 42.0 10.8 79 516-599 70-150 (305)
202 PRK10698 phage shock protein P 91.2 8.8 0.00019 37.7 15.1 39 514-552 31-69 (222)
203 PF13360 PQQ_2: PQQ-like domai 91.2 16 0.00034 35.7 26.8 134 211-388 3-148 (238)
204 PF14662 CCDC155: Coiled-coil 91.2 8.3 0.00018 36.3 13.8 19 592-610 121-139 (193)
205 KOG3091 Nuclear pore complex, 91.1 2 4.3E-05 46.0 10.9 101 490-590 314-424 (508)
206 KOG4360 Uncharacterized coiled 91.0 3.2 6.9E-05 44.5 12.2 88 528-615 205-296 (596)
207 PRK04792 tolB translocation pr 91.0 28 0.0006 38.2 23.5 104 272-390 242-346 (448)
208 PF02191 OLF: Olfactomedin-lik 90.9 15 0.00033 36.7 16.7 166 255-458 30-213 (250)
209 PRK03947 prefoldin subunit alp 90.9 6.2 0.00013 35.6 12.8 24 591-614 112-135 (140)
210 PF02050 FliJ: Flagellar FliJ 90.9 8.1 0.00018 33.2 13.4 16 573-588 69-84 (123)
211 PF08826 DMPK_coil: DMPK coile 90.8 2.7 5.8E-05 31.9 8.4 17 569-585 38-54 (61)
212 PF09755 DUF2046: Uncharacteri 90.8 6.4 0.00014 40.0 13.7 20 592-611 183-202 (310)
213 KOG3647 Predicted coiled-coil 90.8 5.3 0.00011 39.2 12.5 54 523-576 107-160 (338)
214 PRK09841 cryptic autophosphory 90.7 2.8 6E-05 49.0 13.0 34 572-605 348-381 (726)
215 PF15070 GOLGA2L5: Putative go 90.7 3.5 7.5E-05 46.7 13.1 50 516-565 89-138 (617)
216 PRK07720 fliJ flagellar biosyn 90.6 13 0.00028 33.8 14.9 34 524-557 19-52 (146)
217 TIGR01843 type_I_hlyD type I s 90.6 4.1 8.8E-05 44.1 13.6 11 536-546 159-169 (423)
218 TIGR03007 pepcterm_ChnLen poly 90.5 3.2 7E-05 46.1 12.9 11 600-610 354-364 (498)
219 PRK05137 tolB translocation pr 90.5 30 0.00064 37.7 24.3 146 211-389 226-373 (435)
220 KOG0971 Microtubule-associated 90.5 4.7 0.0001 46.2 13.5 40 589-635 327-368 (1243)
221 PF03938 OmpH: Outer membrane 90.4 4.1 8.9E-05 37.5 11.5 23 539-561 47-69 (158)
222 PF12128 DUF3584: Protein of u 90.4 4.8 0.0001 49.9 15.2 19 541-559 634-652 (1201)
223 PRK11519 tyrosine kinase; Prov 90.3 2.5 5.3E-05 49.4 12.1 31 573-603 349-379 (719)
224 PF15066 CAGE1: Cancer-associa 90.3 7.5 0.00016 41.3 14.0 14 597-610 481-494 (527)
225 KOG0646 WD40 repeat protein [G 90.3 15 0.00033 39.1 16.3 58 248-317 84-145 (476)
226 PRK09841 cryptic autophosphory 90.2 2.5 5.3E-05 49.4 11.9 10 618-627 403-412 (726)
227 PF14723 SSFA2_C: Sperm-specif 90.1 1.8 3.8E-05 39.6 8.2 21 568-588 143-163 (179)
228 KOG1003 Actin filament-coating 90.1 13 0.00028 35.1 13.9 34 555-588 94-127 (205)
229 COG1842 PspA Phage shock prote 90.1 11 0.00025 36.9 14.5 8 615-622 154-161 (225)
230 PRK05689 fliJ flagellar biosyn 90.1 15 0.00031 33.4 15.0 42 515-556 10-51 (147)
231 COG1842 PspA Phage shock prote 90.0 16 0.00034 35.9 15.5 19 519-537 29-47 (225)
232 PF05622 HOOK: HOOK protein; 89.9 0.093 2E-06 61.0 0.0 86 525-610 257-348 (713)
233 PRK11028 6-phosphogluconolacto 89.9 27 0.00058 36.3 21.8 157 195-388 46-213 (330)
234 PF14662 CCDC155: Coiled-coil 89.9 13 0.00027 35.1 13.8 37 519-555 20-56 (193)
235 KOG0163 Myosin class VI heavy 89.9 6.1 0.00013 44.4 13.5 30 68-97 312-341 (1259)
236 KOG0980 Actin-binding protein 89.8 4.9 0.00011 46.0 13.1 18 546-563 463-480 (980)
237 PRK04778 septation ring format 89.7 4.8 0.0001 45.6 13.4 17 574-590 380-396 (569)
238 PF05335 DUF745: Protein of un 89.7 9.4 0.0002 36.2 13.2 37 532-568 64-100 (188)
239 PRK11519 tyrosine kinase; Prov 89.7 3.6 7.8E-05 48.0 12.7 25 573-597 356-380 (719)
240 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.6 39 0.00084 37.9 20.4 122 251-388 65-197 (527)
241 COG5185 HEC1 Protein involved 89.6 4.7 0.0001 42.7 11.9 9 519-527 276-284 (622)
242 KOG0976 Rho/Rac1-interacting s 89.5 7.3 0.00016 44.1 13.8 7 604-610 389-395 (1265)
243 smart00502 BBC B-Box C-termina 89.4 11 0.00024 32.8 13.1 14 519-532 12-25 (127)
244 KOG0288 WD40 repeat protein Ti 89.4 7.9 0.00017 40.6 13.2 41 525-565 31-71 (459)
245 KOG2321 WD40 repeat protein [G 89.4 7.9 0.00017 42.3 13.6 76 294-385 131-208 (703)
246 COG1382 GimC Prefoldin, chaper 89.3 12 0.00026 32.5 12.4 36 520-555 12-47 (119)
247 COG4026 Uncharacterized protei 89.3 4.1 8.9E-05 38.8 10.2 72 519-590 133-204 (290)
248 KOG0933 Structural maintenance 89.3 8.2 0.00018 45.0 14.4 33 547-579 785-817 (1174)
249 cd00094 HX Hemopexin-like repe 89.3 21 0.00045 34.2 17.4 111 251-386 12-131 (194)
250 PRK13454 F0F1 ATP synthase sub 89.3 17 0.00037 34.4 14.9 51 515-565 56-106 (181)
251 PF08268 FBA_3: F-box associat 89.2 12 0.00026 33.1 13.1 86 193-289 3-89 (129)
252 KOG0976 Rho/Rac1-interacting s 89.1 7.5 0.00016 44.0 13.6 8 581-588 184-191 (1265)
253 PF07058 Myosin_HC-like: Myosi 89.1 15 0.00033 36.9 14.4 39 512-550 12-50 (351)
254 TIGR01010 BexC_CtrB_KpsE polys 89.1 8.6 0.00019 40.8 14.2 15 574-588 246-260 (362)
255 PF04012 PspA_IM30: PspA/IM30 89.1 17 0.00036 35.6 15.3 44 514-557 30-73 (221)
256 PF14073 Cep57_CLD: Centrosome 89.1 8.9 0.00019 35.8 12.1 27 553-579 54-80 (178)
257 PLN00033 photosystem II stabil 88.9 37 0.0008 36.5 20.7 184 172-391 167-365 (398)
258 PHA02562 46 endonuclease subun 88.8 7.4 0.00016 44.0 14.4 46 516-561 308-356 (562)
259 PRK06568 F0F1 ATP synthase sub 88.8 19 0.00041 33.0 14.9 51 515-565 29-79 (154)
260 PF15290 Syntaphilin: Golgi-lo 88.7 4.6 9.9E-05 40.0 10.5 44 537-580 70-118 (305)
261 PRK04922 tolB translocation pr 88.7 40 0.00087 36.7 22.5 105 271-390 227-332 (433)
262 PRK14011 prefoldin subunit alp 88.7 18 0.0004 32.7 13.9 22 589-610 111-132 (144)
263 TIGR00634 recN DNA repair prot 88.7 2.7 5.8E-05 47.6 10.5 22 589-610 348-369 (563)
264 TIGR03185 DNA_S_dndD DNA sulfu 88.7 5.6 0.00012 45.9 13.3 42 538-579 424-465 (650)
265 PRK13453 F0F1 ATP synthase sub 88.7 21 0.00045 33.5 14.9 52 515-566 43-94 (173)
266 PF05384 DegS: Sensor protein 88.6 17 0.00036 33.6 13.6 41 515-555 7-47 (159)
267 PF10267 Tmemb_cc2: Predicted 88.6 8 0.00017 41.1 13.1 12 596-607 307-318 (395)
268 PRK11028 6-phosphogluconolacto 88.5 33 0.00072 35.5 20.6 146 197-383 3-157 (330)
269 PRK11546 zraP zinc resistance 88.5 2.6 5.6E-05 37.9 8.0 20 569-588 88-107 (143)
270 PRK14472 F0F1 ATP synthase sub 88.5 14 0.0003 34.8 13.6 51 515-565 43-93 (175)
271 KOG0243 Kinesin-like protein [ 88.4 11 0.00023 44.6 14.9 11 284-294 155-165 (1041)
272 PF02191 OLF: Olfactomedin-lik 88.3 29 0.00064 34.7 19.3 197 169-408 17-227 (250)
273 PF05096 Glu_cyclase_2: Glutam 88.3 14 0.0003 37.0 13.9 110 251-385 50-160 (264)
274 KOG0996 Structural maintenance 88.3 6.9 0.00015 46.3 13.2 12 577-588 865-876 (1293)
275 PF09738 DUF2051: Double stran 88.3 11 0.00023 38.7 13.4 93 515-610 78-170 (302)
276 TIGR03866 PQQ_ABC_repeats PQQ- 88.2 30 0.00065 34.6 22.8 147 195-386 42-191 (300)
277 PF14988 DUF4515: Domain of un 88.2 20 0.00044 34.6 14.7 72 537-612 49-125 (206)
278 PRK06231 F0F1 ATP synthase sub 88.2 18 0.0004 34.9 14.5 51 516-566 74-124 (205)
279 PF04799 Fzo_mitofusin: fzo-li 88.2 3 6.5E-05 38.6 8.4 42 573-614 123-164 (171)
280 TIGR02473 flagell_FliJ flagell 88.2 19 0.00041 32.2 14.7 35 522-556 14-48 (141)
281 PF10498 IFT57: Intra-flagella 88.1 13 0.00028 39.3 14.3 28 558-585 275-302 (359)
282 TIGR01000 bacteriocin_acc bact 88.1 7.9 0.00017 42.5 13.5 20 595-614 292-311 (457)
283 PF07106 TBPIP: Tat binding pr 88.1 6.1 0.00013 36.9 10.9 33 516-548 74-106 (169)
284 PRK00178 tolB translocation pr 88.1 43 0.00093 36.3 23.0 103 272-390 223-327 (430)
285 PF10174 Cast: RIM-binding pro 88.1 10 0.00023 44.0 14.7 19 592-610 397-415 (775)
286 PF06637 PV-1: PV-1 protein (P 88.1 6.6 0.00014 40.6 11.5 37 539-575 289-325 (442)
287 PF12325 TMF_TATA_bd: TATA ele 88.0 18 0.00038 31.7 13.8 54 519-572 28-84 (120)
288 PF12777 MT: Microtubule-bindi 88.0 1.9 4E-05 45.5 8.1 68 527-594 220-287 (344)
289 PF13088 BNR_2: BNR repeat-lik 87.9 31 0.00068 34.6 17.9 208 171-390 30-250 (275)
290 KOG4657 Uncharacterized conser 87.9 16 0.00035 35.1 13.2 53 536-588 52-104 (246)
291 PF00038 Filament: Intermediat 87.8 16 0.00034 37.9 15.0 7 603-609 292-298 (312)
292 PRK11281 hypothetical protein; 87.8 4.9 0.00011 48.6 12.3 47 519-565 133-179 (1113)
293 PRK13460 F0F1 ATP synthase sub 87.8 24 0.00052 33.1 14.9 51 516-566 42-92 (173)
294 CHL00019 atpF ATP synthase CF0 87.7 16 0.00035 34.7 13.6 50 516-565 50-99 (184)
295 PF04012 PspA_IM30: PspA/IM30 87.6 16 0.00035 35.7 14.1 49 517-565 26-74 (221)
296 KOG0240 Kinesin (SMY1 subfamil 87.6 9.9 0.00021 41.6 13.1 17 536-552 422-438 (607)
297 PF12761 End3: Actin cytoskele 87.6 8.2 0.00018 36.6 11.1 24 516-539 98-121 (195)
298 TIGR03017 EpsF chain length de 87.6 8.2 0.00018 42.2 13.3 87 516-602 256-350 (444)
299 TIGR02977 phageshock_pspA phag 87.5 26 0.00056 34.3 15.4 38 515-552 32-69 (219)
300 PF05911 DUF869: Plant protein 87.5 9.8 0.00021 44.1 13.9 48 514-561 596-643 (769)
301 PF06476 DUF1090: Protein of u 87.5 7.4 0.00016 33.8 10.1 43 569-611 69-113 (115)
302 COG1730 GIM5 Predicted prefold 87.5 22 0.00047 32.2 13.9 27 525-551 10-36 (145)
303 PF03962 Mnd1: Mnd1 family; I 87.4 6.9 0.00015 37.3 10.8 15 573-587 113-127 (188)
304 KOG0994 Extracellular matrix g 87.4 8.3 0.00018 45.5 12.9 42 569-610 1688-1733(1758)
305 PF10267 Tmemb_cc2: Predicted 87.3 16 0.00034 39.0 14.3 18 580-597 301-318 (395)
306 PF12329 TMF_DNA_bd: TATA elem 87.2 6.4 0.00014 31.2 8.8 15 544-558 7-21 (74)
307 PF12777 MT: Microtubule-bindi 87.2 6.7 0.00014 41.4 11.8 17 538-554 18-34 (344)
308 PRK08475 F0F1 ATP synthase sub 87.2 20 0.00042 33.5 13.6 50 516-565 48-97 (167)
309 PRK12705 hypothetical protein; 87.2 11 0.00023 41.7 13.5 30 536-565 78-107 (508)
310 PRK07352 F0F1 ATP synthase sub 87.2 18 0.0004 33.9 13.6 51 516-566 45-95 (174)
311 TIGR01010 BexC_CtrB_KpsE polys 87.1 25 0.00054 37.3 16.3 9 572-580 251-259 (362)
312 PF14915 CCDC144C: CCDC144C pr 87.0 21 0.00046 36.0 14.1 72 519-590 163-241 (305)
313 PF07058 Myosin_HC-like: Myosi 87.0 5.3 0.00012 40.0 9.8 26 589-614 61-86 (351)
314 PF06005 DUF904: Protein of un 86.9 12 0.00026 29.5 10.1 32 524-555 7-38 (72)
315 KOG0977 Nuclear envelope prote 86.9 3.3 7E-05 45.6 9.3 83 528-610 296-379 (546)
316 PF14988 DUF4515: Domain of un 86.9 15 0.00033 35.5 13.0 12 577-588 61-72 (206)
317 KOG0310 Conserved WD40 repeat- 86.8 49 0.0011 35.6 17.4 145 194-389 121-273 (487)
318 PF10205 KLRAQ: Predicted coil 86.8 6.9 0.00015 32.9 9.0 37 525-561 16-52 (102)
319 KOG0995 Centromere-associated 86.7 20 0.00043 39.5 14.8 63 515-577 419-481 (581)
320 TIGR02977 phageshock_pspA phag 86.7 17 0.00037 35.6 13.6 48 517-564 27-74 (219)
321 PF13863 DUF4200: Domain of un 86.7 21 0.00046 31.3 14.1 36 525-560 11-46 (126)
322 PF14362 DUF4407: Domain of un 86.7 13 0.00029 38.2 13.5 35 534-568 134-168 (301)
323 TIGR00606 rad50 rad50. This fa 86.6 8.7 0.00019 48.2 14.1 6 469-474 679-684 (1311)
324 TIGR01005 eps_transp_fam exopo 86.6 4 8.6E-05 48.1 10.7 13 598-610 373-385 (754)
325 KOG0243 Kinesin-like protein [ 86.6 14 0.0003 43.7 14.4 33 553-585 480-512 (1041)
326 PF10234 Cluap1: Clusterin-ass 86.5 18 0.0004 36.2 13.6 12 603-614 248-259 (267)
327 PF10174 Cast: RIM-binding pro 86.5 15 0.00033 42.7 14.8 25 592-616 390-414 (775)
328 PRK05759 F0F1 ATP synthase sub 86.4 23 0.0005 32.4 13.6 50 516-565 30-79 (156)
329 PRK07353 F0F1 ATP synthase sub 86.2 25 0.00053 31.6 14.9 51 516-566 31-81 (140)
330 KOG4807 F-actin binding protei 86.2 14 0.0003 38.3 12.6 26 592-617 517-542 (593)
331 PRK15178 Vi polysaccharide exp 86.1 12 0.00026 40.4 12.9 83 535-617 242-337 (434)
332 PRK14474 F0F1 ATP synthase sub 86.1 24 0.00053 35.3 14.5 49 516-564 31-79 (250)
333 PF03962 Mnd1: Mnd1 family; I 86.1 8.6 0.00019 36.6 10.7 17 525-541 73-89 (188)
334 TIGR02338 gimC_beta prefoldin, 86.1 20 0.00042 30.9 12.1 20 592-611 86-105 (110)
335 PF07111 HCR: Alpha helical co 86.0 16 0.00035 41.1 13.9 23 539-561 525-547 (739)
336 PF10481 CENP-F_N: Cenp-F N-te 85.9 15 0.00032 36.5 12.1 27 525-551 22-48 (307)
337 KOG0612 Rho-associated, coiled 85.7 8.2 0.00018 46.0 12.0 35 189-223 141-176 (1317)
338 PRK03947 prefoldin subunit alp 85.6 19 0.00041 32.4 12.4 34 515-548 7-40 (140)
339 PRK03629 tolB translocation pr 85.5 59 0.0013 35.3 21.5 148 211-390 223-371 (429)
340 KOG2264 Exostosin EXT1L [Signa 85.5 5.1 0.00011 43.4 9.5 25 522-546 94-118 (907)
341 KOG3598 Thyroid hormone recept 85.5 1.8 3.9E-05 51.7 6.6 14 88-101 1643-1656(2220)
342 PRK13455 F0F1 ATP synthase sub 85.5 24 0.00053 33.4 13.6 50 516-565 53-102 (184)
343 PF05010 TACC: Transforming ac 85.5 37 0.00079 32.8 14.7 20 553-572 115-134 (207)
344 KOG1899 LAR transmembrane tyro 85.4 10 0.00023 41.7 11.9 55 535-589 132-193 (861)
345 PRK10803 tol-pal system protei 85.4 4.2 9E-05 41.1 8.7 17 549-565 61-77 (263)
346 PF02090 SPAM: Salmonella surf 85.4 26 0.00057 31.1 13.7 16 522-537 31-46 (147)
347 TIGR02231 conserved hypothetic 85.3 7.7 0.00017 43.5 11.7 31 515-545 72-102 (525)
348 PF14915 CCDC144C: CCDC144C pr 85.2 32 0.0007 34.7 14.4 24 591-614 218-241 (305)
349 PRK10476 multidrug resistance 85.2 18 0.0004 38.0 14.0 17 542-558 121-137 (346)
350 smart00502 BBC B-Box C-termina 85.0 25 0.00053 30.5 13.6 6 533-538 19-24 (127)
351 COG3206 GumC Uncharacterized p 85.0 20 0.00043 39.4 14.6 113 516-628 287-416 (458)
352 PRK10803 tol-pal system protei 85.0 3.5 7.7E-05 41.6 8.0 10 579-588 77-86 (263)
353 PRK06975 bifunctional uroporph 84.9 6.6 0.00014 45.2 11.0 20 571-590 386-405 (656)
354 PRK04043 tolB translocation pr 84.8 63 0.0014 35.0 21.6 149 211-391 213-366 (419)
355 PRK13729 conjugal transfer pil 84.7 2.9 6.3E-05 45.1 7.4 7 427-433 30-36 (475)
356 PF14282 FlxA: FlxA-like prote 84.7 6.8 0.00015 33.5 8.4 13 515-527 20-32 (106)
357 PF05700 BCAS2: Breast carcino 84.6 7 0.00015 38.3 9.7 26 538-563 139-164 (221)
358 PRK10929 putative mechanosensi 84.6 9.6 0.00021 46.2 12.4 8 607-614 240-247 (1109)
359 KOG0310 Conserved WD40 repeat- 84.6 19 0.00041 38.6 13.1 113 252-387 76-190 (487)
360 PRK14475 F0F1 ATP synthase sub 84.5 35 0.00075 31.8 14.9 50 516-565 36-85 (167)
361 TIGR02894 DNA_bind_RsfA transc 84.5 5.1 0.00011 36.6 7.8 36 553-588 101-136 (161)
362 TIGR03321 alt_F1F0_F0_B altern 84.5 24 0.00052 35.2 13.6 49 516-564 31-79 (246)
363 KOG0979 Structural maintenance 84.4 15 0.00032 43.0 13.2 42 547-588 316-357 (1072)
364 KOG1003 Actin filament-coating 84.4 34 0.00073 32.4 13.2 63 517-579 7-69 (205)
365 KOG4673 Transcription factor T 84.4 22 0.00048 39.7 13.8 106 514-619 523-637 (961)
366 KOG2991 Splicing regulator [RN 84.4 28 0.00061 34.1 13.1 22 528-549 136-157 (330)
367 KOG3647 Predicted coiled-coil 84.3 20 0.00044 35.3 12.2 12 540-551 138-149 (338)
368 PF05911 DUF869: Plant protein 84.3 15 0.00032 42.7 13.3 52 517-568 592-643 (769)
369 KOG0018 Structural maintenance 84.1 14 0.0003 43.5 12.8 21 514-534 652-672 (1141)
370 PTZ00420 coronin; Provisional 83.9 82 0.0018 35.6 25.5 116 255-389 178-300 (568)
371 PF15035 Rootletin: Ciliary ro 83.9 31 0.00067 32.7 13.2 57 512-568 62-128 (182)
372 TIGR00998 8a0101 efflux pump m 83.9 29 0.00063 36.1 14.8 12 519-530 85-96 (334)
373 KOG0249 LAR-interacting protei 83.8 5.4 0.00012 44.6 9.0 90 525-615 95-184 (916)
374 KOG2129 Uncharacterized conser 83.8 27 0.00058 36.7 13.4 7 605-611 310-316 (552)
375 PRK02119 hypothetical protein; 83.8 6.4 0.00014 31.1 7.3 7 604-610 47-53 (73)
376 KOG0964 Structural maintenance 83.8 15 0.00033 42.7 12.7 100 519-618 395-498 (1200)
377 PF14817 HAUS5: HAUS augmin-li 83.7 16 0.00035 41.5 13.1 87 524-617 82-168 (632)
378 PRK02889 tolB translocation pr 83.7 70 0.0015 34.7 20.9 147 211-390 220-368 (427)
379 PF07889 DUF1664: Protein of u 83.7 15 0.00034 32.3 10.3 11 522-532 51-61 (126)
380 PF14197 Cep57_CLD_2: Centroso 83.6 15 0.00032 28.8 9.1 30 556-585 33-62 (69)
381 KOG2077 JNK/SAPK-associated pr 83.6 16 0.00034 39.9 12.1 47 518-564 333-379 (832)
382 KOG0240 Kinesin (SMY1 subfamil 83.6 21 0.00046 39.2 13.2 21 518-538 418-438 (607)
383 PF02646 RmuC: RmuC family; I 83.5 6.6 0.00014 40.6 9.4 41 580-623 34-74 (304)
384 COG3206 GumC Uncharacterized p 83.5 12 0.00025 41.3 11.9 58 553-610 317-382 (458)
385 TIGR03495 phage_LysB phage lys 83.3 16 0.00035 32.6 10.3 29 525-553 23-51 (135)
386 PF14817 HAUS5: HAUS augmin-li 83.3 22 0.00048 40.4 14.0 48 516-563 81-128 (632)
387 PF05266 DUF724: Protein of un 83.2 23 0.0005 33.8 12.2 46 569-614 130-179 (190)
388 PF13514 AAA_27: AAA domain 83.2 19 0.00041 44.4 14.8 51 515-565 151-204 (1111)
389 PRK13684 Ycf48-like protein; P 83.2 64 0.0014 33.8 20.1 172 172-390 77-252 (334)
390 PF04201 TPD52: Tumour protein 83.2 2.8 6E-05 38.3 5.6 39 520-558 28-66 (162)
391 PF06632 XRCC4: DNA double-str 83.1 22 0.00047 37.2 12.9 80 515-594 131-211 (342)
392 KOG0288 WD40 repeat protein Ti 83.0 19 0.0004 37.9 12.0 21 525-545 45-65 (459)
393 KOG0979 Structural maintenance 83.0 24 0.00053 41.4 14.1 74 512-585 634-707 (1072)
394 PRK14473 F0F1 ATP synthase sub 82.9 40 0.00086 31.2 14.9 50 516-565 34-83 (164)
395 PF10226 DUF2216: Uncharacteri 82.9 42 0.00091 31.5 14.4 35 575-609 106-140 (195)
396 PRK00286 xseA exodeoxyribonucl 82.9 26 0.00057 38.3 14.3 20 427-448 195-214 (438)
397 TIGR02338 gimC_beta prefoldin, 82.8 23 0.0005 30.4 11.1 25 525-549 14-38 (110)
398 PF10205 KLRAQ: Predicted coil 82.7 25 0.00054 29.6 10.6 11 592-602 59-69 (102)
399 KOG4603 TBP-1 interacting prot 82.7 31 0.00068 31.7 11.9 17 572-588 125-141 (201)
400 TIGR03017 EpsF chain length de 82.5 15 0.00032 40.1 12.4 8 618-625 375-382 (444)
401 PF05546 She9_MDM33: She9 / Md 82.5 45 0.00097 32.0 13.5 20 575-594 104-123 (207)
402 PF08647 BRE1: BRE1 E3 ubiquit 82.4 28 0.00061 29.1 12.9 20 577-596 59-78 (96)
403 PRK09343 prefoldin subunit bet 82.2 34 0.00074 30.0 12.3 27 525-551 18-44 (121)
404 COG0711 AtpF F0F1-type ATP syn 82.2 42 0.00091 31.1 14.4 49 516-564 32-80 (161)
405 KOG0994 Extracellular matrix g 82.2 23 0.00049 42.1 13.4 10 591-600 1623-1632(1758)
406 cd00216 PQQ_DH Dehydrogenases 82.2 88 0.0019 34.7 24.3 63 270-338 254-328 (488)
407 PF13863 DUF4200: Domain of un 82.1 34 0.00075 30.0 14.9 20 591-610 85-104 (126)
408 PRK14471 F0F1 ATP synthase sub 82.0 43 0.00093 31.0 14.5 51 515-565 33-83 (164)
409 PF12329 TMF_DNA_bd: TATA elem 82.0 11 0.00023 30.0 7.9 19 528-546 5-23 (74)
410 KOG0933 Structural maintenance 82.0 25 0.00055 41.2 13.7 7 429-435 660-666 (1174)
411 PF11629 Mst1_SARAH: C termina 81.9 7 0.00015 27.9 5.9 35 579-613 10-45 (49)
412 PRK05137 tolB translocation pr 81.9 83 0.0018 34.2 23.1 104 272-390 226-330 (435)
413 PF09789 DUF2353: Uncharacteri 81.6 13 0.00029 38.2 10.5 21 537-557 81-101 (319)
414 PF02897 Peptidase_S9_N: Proly 81.5 59 0.0013 35.0 16.5 167 195-388 134-318 (414)
415 PRK13428 F0F1 ATP synthase sub 81.5 27 0.00059 38.2 13.6 49 516-564 27-75 (445)
416 PF10282 Lactonase: Lactonase, 81.5 74 0.0016 33.4 18.2 177 189-398 147-340 (345)
417 PF12217 End_beta_propel: Cata 81.4 60 0.0013 32.2 17.4 182 171-367 115-333 (367)
418 PF12795 MscS_porin: Mechanose 81.3 40 0.00087 33.4 13.8 41 519-559 90-137 (240)
419 TIGR02231 conserved hypothetic 81.3 16 0.00036 40.9 12.3 23 591-613 149-171 (525)
420 PF11068 YlqD: YlqD protein; 81.2 17 0.00036 32.4 9.7 6 560-565 60-65 (131)
421 COG3524 KpsE Capsule polysacch 81.2 41 0.00088 34.1 13.2 84 537-620 181-278 (372)
422 PRK07720 fliJ flagellar biosyn 81.1 27 0.00059 31.6 11.6 37 531-567 19-55 (146)
423 PF13870 DUF4201: Domain of un 81.1 49 0.0011 31.1 15.0 103 516-618 15-136 (177)
424 PF07889 DUF1664: Protein of u 81.0 17 0.00036 32.1 9.5 15 573-587 85-99 (126)
425 PRK03629 tolB translocation pr 81.0 89 0.0019 34.0 23.8 104 272-390 223-327 (429)
426 PRK01156 chromosome segregatio 80.9 28 0.00062 41.8 14.9 7 258-264 25-31 (895)
427 PF09910 DUF2139: Uncharacteri 80.8 69 0.0015 32.6 20.7 103 210-335 77-185 (339)
428 PRK03598 putative efflux pump 80.7 42 0.0009 35.0 14.5 21 540-560 112-132 (331)
429 KOG4403 Cell surface glycoprot 80.6 8.2 0.00018 40.5 8.5 22 593-614 346-367 (575)
430 PLN00181 protein SPA1-RELATED; 80.6 1.3E+02 0.0028 35.6 20.1 61 255-333 587-650 (793)
431 PRK05689 fliJ flagellar biosyn 80.5 28 0.00061 31.5 11.5 36 532-567 20-55 (147)
432 PRK00295 hypothetical protein; 80.4 11 0.00024 29.3 7.4 51 540-590 3-53 (68)
433 PLN02919 haloacid dehalogenase 80.4 1.5E+02 0.0033 36.4 26.6 221 189-450 627-890 (1057)
434 PF12004 DUF3498: Domain of un 80.4 0.53 1.1E-05 51.2 0.0 90 519-611 353-450 (495)
435 PRK10698 phage shock protein P 80.3 54 0.0012 32.2 14.0 102 513-614 23-126 (222)
436 PF10282 Lactonase: Lactonase, 80.3 81 0.0017 33.1 21.7 210 195-450 48-277 (345)
437 cd00200 WD40 WD40 domain, foun 80.3 58 0.0013 31.4 21.2 201 183-449 8-208 (289)
438 PF15397 DUF4618: Domain of un 80.3 61 0.0013 32.4 14.2 97 517-613 63-168 (258)
439 KOG1036 Mitotic spindle checkp 80.2 60 0.0013 33.0 14.1 155 250-436 59-254 (323)
440 PF14992 TMCO5: TMCO5 family 80.2 15 0.00033 36.9 10.0 107 511-618 60-184 (280)
441 COG0497 RecN ATPase involved i 80.1 15 0.00032 40.9 10.8 106 511-616 266-371 (557)
442 PF03178 CPSF_A: CPSF A subuni 79.7 77 0.0017 32.8 16.0 144 189-365 27-190 (321)
443 PF09730 BicD: Microtubule-ass 79.7 38 0.00082 39.1 14.2 100 516-615 36-149 (717)
444 PF07851 TMPIT: TMPIT-like pro 79.6 19 0.00041 37.3 10.8 86 525-610 1-91 (330)
445 PF10498 IFT57: Intra-flagella 79.5 43 0.00094 35.4 13.8 96 512-607 243-348 (359)
446 PRK08476 F0F1 ATP synthase sub 79.4 48 0.001 29.9 14.8 99 515-613 32-133 (141)
447 KOG0977 Nuclear envelope prote 79.4 37 0.00081 37.6 13.5 101 513-613 91-195 (546)
448 PF12795 MscS_porin: Mechanose 79.2 36 0.00077 33.8 12.7 105 510-614 41-165 (240)
449 PRK04325 hypothetical protein; 79.2 12 0.00026 29.7 7.3 53 538-590 5-57 (74)
450 PRK11546 zraP zinc resistance 79.2 24 0.00051 31.9 10.0 74 534-607 46-119 (143)
451 PLN02919 haloacid dehalogenase 79.2 1.7E+02 0.0036 36.0 22.8 175 189-385 686-891 (1057)
452 PF14870 PSII_BNR: Photosynthe 79.1 82 0.0018 32.5 20.9 228 172-464 48-277 (302)
453 PF13870 DUF4201: Domain of un 79.0 57 0.0012 30.6 15.1 105 514-618 56-176 (177)
454 PRK00736 hypothetical protein; 79.0 12 0.00026 29.2 7.1 51 540-590 3-53 (68)
455 KOG0163 Myosin class VI heavy 79.0 42 0.00091 38.2 13.6 107 510-616 892-1000(1259)
456 PRK04406 hypothetical protein; 79.0 15 0.00032 29.3 7.7 56 512-567 2-57 (75)
457 KOG4593 Mitotic checkpoint pro 78.9 48 0.001 37.5 14.2 107 512-618 128-234 (716)
458 KOG4603 TBP-1 interacting prot 78.9 11 0.00024 34.5 7.7 89 535-623 79-169 (201)
459 PF02239 Cytochrom_D1: Cytochr 78.8 95 0.0021 33.0 17.2 217 195-449 48-303 (369)
460 PF13805 Pil1: Eisosome compon 78.8 50 0.0011 33.2 13.1 95 523-617 98-195 (271)
461 PF09730 BicD: Microtubule-ass 78.8 43 0.00093 38.6 14.3 102 511-612 66-181 (717)
462 KOG0249 LAR-interacting protei 78.8 22 0.00048 40.0 11.5 103 509-611 155-257 (916)
463 PF14931 IFT20: Intraflagellar 78.7 45 0.00097 29.2 13.8 106 494-602 3-119 (120)
464 TIGR00998 8a0101 efflux pump m 78.7 36 0.00079 35.4 13.3 91 524-614 76-173 (334)
465 KOG2391 Vacuolar sorting prote 78.7 33 0.00072 35.2 11.9 103 512-621 216-330 (365)
466 PF02897 Peptidase_S9_N: Proly 78.5 1E+02 0.0022 33.2 18.4 160 195-389 238-411 (414)
467 PF04880 NUDE_C: NUDE protein, 78.5 3.3 7.2E-05 38.3 4.5 54 537-595 2-55 (166)
468 KOG0241 Kinesin-like protein [ 78.4 9.5 0.00021 44.1 8.8 74 507-589 357-430 (1714)
469 KOG1937 Uncharacterized conser 78.3 39 0.00084 36.1 12.5 98 512-610 316-426 (521)
470 PF09787 Golgin_A5: Golgin sub 78.3 28 0.00061 38.8 12.8 91 516-606 276-381 (511)
471 PRK15136 multidrug efflux syst 78.1 55 0.0012 35.1 14.6 132 488-619 69-215 (390)
472 PRK10869 recombination and rep 78.1 15 0.00032 41.5 10.5 106 511-616 265-370 (553)
473 KOG3850 Predicted membrane pro 78.1 40 0.00087 35.1 12.4 91 510-600 281-376 (455)
474 KOG2072 Translation initiation 77.9 52 0.0011 37.9 14.2 108 510-617 557-700 (988)
475 cd00632 Prefoldin_beta Prefold 77.9 42 0.00092 28.5 11.2 82 516-597 1-104 (105)
476 PF14362 DUF4407: Domain of un 77.9 51 0.0011 33.9 13.8 109 512-621 119-244 (301)
477 PF10805 DUF2730: Protein of u 77.9 20 0.00043 30.7 8.9 68 533-603 33-102 (106)
478 KOG2751 Beclin-like protein [S 77.8 43 0.00093 35.6 12.8 95 512-606 162-265 (447)
479 COG2882 FliJ Flagellar biosynt 77.8 55 0.0012 29.8 13.9 110 508-617 17-132 (148)
480 PF07321 YscO: Type III secret 77.8 57 0.0012 29.9 15.0 109 511-619 40-152 (152)
481 PRK10636 putative ABC transpor 77.8 14 0.00031 42.4 10.6 85 527-614 548-632 (638)
482 PF05701 WEMBL: Weak chloropla 77.7 54 0.0012 36.7 14.8 106 511-616 278-401 (522)
483 PRK02793 phi X174 lysis protei 77.7 12 0.00027 29.4 7.0 56 536-591 2-57 (72)
484 TIGR03794 NHPM_micro_HlyD NHPM 77.7 27 0.00059 37.9 12.3 100 517-616 128-242 (421)
485 PF06156 DUF972: Protein of un 77.7 13 0.00028 31.8 7.6 54 538-591 4-57 (107)
486 PRK10722 hypothetical protein; 77.5 19 0.00042 35.2 9.5 82 529-610 124-209 (247)
487 PF13874 Nup54: Nucleoporin co 77.5 14 0.0003 33.4 8.3 99 513-611 43-141 (141)
488 COG0419 SbcC ATPase involved i 77.4 40 0.00086 40.7 14.6 103 511-614 200-318 (908)
489 KOG0018 Structural maintenance 77.3 15 0.00032 43.4 10.1 115 508-623 228-355 (1141)
490 COG5185 HEC1 Protein involved 77.3 43 0.00093 35.9 12.6 102 510-611 246-361 (622)
491 PF05700 BCAS2: Breast carcino 77.3 42 0.00091 32.9 12.3 83 534-616 135-218 (221)
492 TIGR02894 DNA_bind_RsfA transc 77.3 25 0.00054 32.2 9.6 73 511-584 81-153 (161)
493 COG4985 ABC-type phosphate tra 77.3 30 0.00064 33.5 10.4 79 526-610 162-244 (289)
494 KOG0993 Rab5 GTPase effector R 77.2 41 0.00088 35.3 12.2 124 504-633 89-229 (542)
495 KOG0964 Structural maintenance 77.2 33 0.00073 40.1 12.6 104 511-614 276-379 (1200)
496 KOG1850 Myosin-like coiled-coi 77.2 68 0.0015 32.7 13.3 99 517-616 72-179 (391)
497 KOG4593 Mitotic checkpoint pro 77.1 48 0.001 37.4 13.6 104 509-612 132-235 (716)
498 KOG4360 Uncharacterized coiled 77.1 37 0.00081 36.7 12.2 95 510-604 208-302 (596)
499 PRK06569 F0F1 ATP synthase sub 77.1 60 0.0013 29.8 13.5 92 514-605 34-128 (155)
500 KOG1103 Predicted coiled-coil 77.1 50 0.0011 33.8 12.6 104 514-617 118-269 (561)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=298.45 Aligned_cols=256 Identities=29% Similarity=0.527 Sum_probs=225.9
Q ss_pred CCCcceeEEEECCEEEEEcccCCCcc-----cCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEE
Q 006645 184 KARYEHGAAVVQDKMYIYGGNHNGRY-----LSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKL 258 (637)
Q Consensus 184 ~~R~~~a~~~~~~~lyv~GG~~~~~~-----~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~l 258 (637)
+.|..|+++.+|++||-|||++.+.. .-|+++++..+.+|.++++......-.++-|..|..|+||+.+.+++++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 46899999999999999999875532 2379999999999999987544344445567788999999999999999
Q ss_pred EEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCC-CCCCCCceEEEECCCCceEE
Q 006645 259 LSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDA-KRSLLNDLHILDLETMTWDE 337 (637)
Q Consensus 259 yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~n~i~~yd~~t~~W~~ 337 (637)
||+||++.+...+|.+++||+.++.|.++...|-.|.+|.+|++|++++.+|||||+.. ..+++++++.+|+.|.+|+.
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 99999998878899999999999999999999999999999999999999999999854 34578999999999999999
Q ss_pred ecCCCCCCCcccccEEEEEcCCEEEEEeCCCC---------CCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEEC
Q 006645 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (637)
Q Consensus 338 ~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~---------~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~ 408 (637)
+.+.|.+|.-|.+|+++++ ++.+|||||.+. ..+.+.|-.+|+.|..|...+..+..|.+|..|++.+.+
T Consensus 172 ~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn 250 (392)
T KOG4693|consen 172 MHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN 250 (392)
T ss_pred hhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc
Confidence 9999999999999999998 578999999653 245678999999999999998878889999999999987
Q ss_pred CccccceeeeeeccCCCCEEEEEcCCCCC---CcccEEEEeCCCCccccccc
Q 006645 409 ENWFLGLSLVVSSYSGEDVIVAFGGYNGR---YNNEVHVLKPSHKSTLSSKM 457 (637)
Q Consensus 409 ~~~yiG~s~~~~~~~g~~~l~v~GG~~~~---~~~~v~~~d~~~~~~~~~~~ 457 (637)
+ .||+|||+++. .+||+|+|||.+..|.....
T Consensus 251 g-----------------~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 251 G-----------------KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred c-----------------eEEEecccchhhhhhhcceeecccccchheeeec
Confidence 6 89999999985 68999999999998876543
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.4e-37 Score=334.57 Aligned_cols=255 Identities=22% Similarity=0.365 Sum_probs=219.4
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEcccCC--CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCC-Ccc
Q 006645 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN--GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT-PCA 247 (637)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~-~r~ 247 (637)
++|..+.+.+.+|.+|.+|+++++++.||||||... ....+++++||+.+++|..+++++ ..|. .|.
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g----------~~P~~~~~ 220 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG----------DVPHLSCL 220 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC----------CCCCCccc
Confidence 699999888888999999999999999999999643 234578999999999999875542 2233 477
Q ss_pred cceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEE
Q 006645 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (637)
Q Consensus 248 ~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~ 327 (637)
+|+++.++++||||||+... ..++++++||+.+++|..+++.+..|.+|.+|++++++++||||||.+... .++++++
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~ 298 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDS 298 (470)
T ss_pred ceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEE
Confidence 99999999999999998754 567899999999999999988666689999999999999999999997654 4789999
Q ss_pred EECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEE
Q 006645 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (637)
Q Consensus 328 yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~ 407 (637)
||+.+++|+.+++.+.+|.+|..|+++++ +++|||+||.++. .++++++||+.+++|+.+...+..|.+|..|+++++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~ 376 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV 376 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE
Confidence 99999999999876667889999999988 5679999997654 478999999999999999877778999999999998
Q ss_pred CCccccceeeeeeccCCCCEEEEEcCCCC----------CCcccEEEEeCCCCcccccc
Q 006645 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNG----------RYNNEVHVLKPSHKSTLSSK 456 (637)
Q Consensus 408 ~~~~yiG~s~~~~~~~g~~~l~v~GG~~~----------~~~~~v~~~d~~~~~~~~~~ 456 (637)
++ +||||||.+. ...+++|+||+.++.|....
T Consensus 377 ~~-----------------~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 377 GK-----------------HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred CC-----------------EEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 66 8999999752 25689999999999887554
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.5e-36 Score=319.77 Aligned_cols=258 Identities=22% Similarity=0.370 Sum_probs=212.9
Q ss_pred cceEEecccC-CCCCCCCcceeEEEECCEEEEEcccCC--CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCC-C
Q 006645 170 YDQWIAPPIS-GQRPKARYEHGAAVVQDKMYIYGGNHN--GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT-P 245 (637)
Q Consensus 170 ~~~W~~~~~~-g~~p~~R~~~a~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~-~ 245 (637)
.+.|..+... |.+|.+|.+|++++++++|||+||... ....+++++||+.+++|..+++++ ..|. .
T Consensus 6 ~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~----------~~p~~~ 75 (341)
T PLN02153 6 QGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG----------DVPRIS 75 (341)
T ss_pred CCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC----------CCCCCc
Confidence 4579998764 468999999999999999999999743 345689999999999999887653 1222 3
Q ss_pred cccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccC--CCCCCCCCceEEEEECCEEEEEeCCCCCC----
Q 006645 246 CAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY--GKPPVSRGGQSVTLVGTSLVIFGGEDAKR---- 319 (637)
Q Consensus 246 r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyv~GG~~~~~---- 319 (637)
+.+|+++.++++||||||.... ...+++++||+.+++|..+++. ...|.+|.+|++++++++||||||.+...
T Consensus 76 ~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 76 CLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKT 154 (341)
T ss_pred cCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCC
Confidence 5589999999999999998755 4578999999999999998753 12378999999999999999999986432
Q ss_pred -CCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCC--------CCCcCcEEEEECCCCeeEecc
Q 006645 320 -SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH--------AACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 320 -~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~--------~~~~~dl~~~d~~t~~W~~l~ 390 (637)
..++++++||+.+++|..++..+.+|.+|.+|+++++ +++|||+||.+. ...++++++||+.+++|+.+.
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecc
Confidence 1357899999999999999877767789999998887 567999998642 123578999999999999998
Q ss_pred cCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC----------CCCcccEEEEeCCCCcccccc
Q 006645 391 QQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN----------GRYNNEVHVLKPSHKSTLSSK 456 (637)
Q Consensus 391 ~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~----------~~~~~~v~~~d~~~~~~~~~~ 456 (637)
..+.+|.+|..|+++++++ +||||||.. +...+++|+||+.++.|....
T Consensus 234 ~~g~~P~~r~~~~~~~~~~-----------------~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 234 TTGAKPSARSVFAHAVVGK-----------------YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred ccCCCCCCcceeeeEEECC-----------------EEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 7777899999999999876 899999963 224689999999999887553
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.7e-37 Score=337.49 Aligned_cols=252 Identities=26% Similarity=0.467 Sum_probs=228.3
Q ss_pred ccCccccccc----eEEecccCCCCCCCCcceeEEEECCEEEEEcccC-CCcccCcEEEEEccCCeEEEeeecccccCCC
Q 006645 162 EGLGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTE 236 (637)
Q Consensus 162 ~~~~~~~~~~----~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~ 236 (637)
..++.++.|| +|..... +|.+|..+++++++|+||++||++ +...++++++||+.+++|..+++
T Consensus 298 ~~~~~ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~-------- 366 (571)
T KOG4441|consen 298 QSLRSVECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP-------- 366 (571)
T ss_pred cccceeEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCC--------
Confidence 3456666776 8999986 999999999999999999999998 68889999999999999999865
Q ss_pred CCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCC
Q 006645 237 SPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGED 316 (637)
Q Consensus 237 ~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~ 316 (637)
|..+|.+|++++++|.||++||+++. ..++++++|||.+++|..+++ |+.+|++|++++++++||++||.+
T Consensus 367 -----M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 367 -----MNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred -----ccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCC---CCcceeeeEEEEECCEEEEEcCcC
Confidence 47999999999999999999999865 788999999999999999977 788999999999999999999998
Q ss_pred CCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCCCC
Q 006645 317 AKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIP 396 (637)
Q Consensus 317 ~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~~p 396 (637)
+....++++.+|||.+++|+.++++ +.+|.+|+++++ +++||++||+++...+..+.+||+.+++|+.+. .+.
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~---~m~ 510 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA---PMT 510 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCc---ccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc---cCc
Confidence 8776799999999999999999865 899999999888 677999999988767788999999999999985 788
Q ss_pred CCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC-CcccEEEEeCCCCccccccc
Q 006645 397 TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSKM 457 (637)
Q Consensus 397 ~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~~ 457 (637)
.+|..+.++++++ .||++||+++. +.+.+.+|||.++.|.....
T Consensus 511 ~~rs~~g~~~~~~-----------------~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 511 SPRSAVGVVVLGG-----------------KLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cccccccEEEECC-----------------EEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 9999999999976 89999999886 89999999999998876554
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.2e-35 Score=322.53 Aligned_cols=255 Identities=22% Similarity=0.403 Sum_probs=214.0
Q ss_pred cccccc----eEEecccCCCCCC-CCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCC
Q 006645 166 SVVVYD----QWIAPPISGQRPK-ARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (637)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~-~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (637)
.++.|| +|..++..|.+|. +|.+|++++++++||||||......++++++||+.+++|+.+.++.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~---------- 263 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVE---------- 263 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCC----------
Confidence 456665 9999887776665 4679999999999999999877778899999999999999987652
Q ss_pred CCCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCC
Q 006645 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS 320 (637)
Q Consensus 241 ~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 320 (637)
..|.+|.+|+++.++++||||||.... ...+++++||+.+++|+.+++.+.+|.+|.+|++++++++||++||.++.
T Consensus 264 ~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-- 340 (470)
T PLN02193 264 EGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-- 340 (470)
T ss_pred CCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--
Confidence 347899999999999999999998764 46789999999999999998777788999999999999999999998653
Q ss_pred CCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCC---------CCCcCcEEEEECCCCeeEeccc
Q 006645 321 LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQ 391 (637)
Q Consensus 321 ~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~---------~~~~~dl~~~d~~t~~W~~l~~ 391 (637)
..+++++||+.+++|+.+.+.+..|.+|..|+++++ +++||||||... ...++++++||+.+++|+.+..
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 369999999999999999887778999999999988 677999999753 2356799999999999999875
Q ss_pred CC---CCCCCCcccEEE--EECCccccceeeeeeccCCCCEEEEEcCCCC--CCcccEEEEeCCC
Q 006645 392 QG---EIPTPRAGHAGV--TIGENWFLGLSLVVSSYSGEDVIVAFGGYNG--RYNNEVHVLKPSH 449 (637)
Q Consensus 392 ~~---~~p~~R~~hs~~--~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~--~~~~~v~~~d~~~ 449 (637)
.+ ..|.+|..|+++ .+.+ .+.||+|||+++ ..++|+|+|++.+
T Consensus 420 ~~~~~~~P~~R~~~~~~~~~~~~---------------~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 420 FGEEEETPSSRGWTASTTGTIDG---------------KKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCCCCCCCccccceeeEEcC---------------CceEEEEcCCCCccccccceEEEecCC
Confidence 44 357888877543 2322 336999999964 4789999998764
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.7e-35 Score=310.28 Aligned_cols=259 Identities=23% Similarity=0.385 Sum_probs=207.3
Q ss_pred cccccc----eEEecccCCCCCCC-CcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCC
Q 006645 166 SVVVYD----QWIAPPISGQRPKA-RYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (637)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~~-R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (637)
.++.|| +|..+++.+..|.. +.+|++++++++||||||......++++++||+.+++|..++++. ..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~--------~~ 122 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLD--------EE 122 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCC--------CC
Confidence 455665 89998876544543 458999999999999999877777899999999999999986642 12
Q ss_pred CCCCCcccceEEEeCCEEEEEEccCCCC-----CcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCC
Q 006645 241 ALLTPCAGHSLIPWENKLLSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGE 315 (637)
Q Consensus 241 ~~p~~r~~hs~v~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~ 315 (637)
..|.+|.+|+++.++++||||||..... ..++++++||+.+++|..+++.+.+|.+|.+|++++++++|||+||.
T Consensus 123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 2478999999999999999999986431 24578999999999999998877677899999999999999999997
Q ss_pred CCC-------CCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCC---------CCCCcCcEEEE
Q 006645 316 DAK-------RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS---------HAACFNDLHVL 379 (637)
Q Consensus 316 ~~~-------~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~---------~~~~~~dl~~~ 379 (637)
+.. ...++++++||+.+++|+.+...+..|.+|..|+++++ +++||||||.. .....+++|+|
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~ 281 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYAL 281 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEE
Confidence 421 12368999999999999999887778999999999888 67899999963 12346799999
Q ss_pred ECCCCeeEecccCCCCCCC--CcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC--CcccEEEEeCC
Q 006645 380 DLQTMEWSRPTQQGEIPTP--RAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR--YNNEVHVLKPS 448 (637)
Q Consensus 380 d~~t~~W~~l~~~~~~p~~--R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~--~~~~v~~~d~~ 448 (637)
|+.+++|+.+...+..|.| |..|+++.+.+ ++.||||||+++. .++|+|+|+..
T Consensus 282 d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~---------------~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 282 DTETLVWEKLGECGEPAMPRGWTAYTTATVYG---------------KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred EcCccEEEeccCCCCCCCCCccccccccccCC---------------cceEEEEcCcCCCCccccceEEEecc
Confidence 9999999998654333444 44455554432 3489999999663 68999999764
No 7
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=9e-36 Score=324.57 Aligned_cols=263 Identities=37% Similarity=0.622 Sum_probs=232.2
Q ss_pred ccceEEec-ccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCc--EEEEEccCCeEEEeeecccccCCCCCCCCCCCC
Q 006645 169 VYDQWIAP-PISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSD--MHILDLRSWAWSKIQAKAVAESTESPSPALLTP 245 (637)
Q Consensus 169 ~~~~W~~~-~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~ 245 (637)
.+..|... ...+..|.+|++|+++.+++++|||||........+ +|+||..+..|......+ ..|.+
T Consensus 43 ~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g----------~~p~~ 112 (482)
T KOG0379|consen 43 LFQPENLGCDVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG----------DEPSP 112 (482)
T ss_pred eeeeeccccccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC----------CCCCc
Confidence 34456655 356789999999999999999999999766655555 999999999999887764 45799
Q ss_pred cccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCce
Q 006645 246 CAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDL 325 (637)
Q Consensus 246 r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i 325 (637)
|.+|++++++++||+|||.+......+++++||+.|++|..+.+.+.+|++|.+|++++++++||||||.+..+..+|++
T Consensus 113 r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl 192 (482)
T KOG0379|consen 113 RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDL 192 (482)
T ss_pred ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeee
Confidence 99999999999999999998766778999999999999999999999999999999999999999999998887679999
Q ss_pred EEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCC-CCCCcCcEEEEECCCCeeEecccCCCCCCCCcccEE
Q 006645 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS-HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAG 404 (637)
Q Consensus 326 ~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~-~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~ 404 (637)
|+||+.+.+|..+.+.|..|.||.+|+++++. ++++||||.+ +..+++|+|+||+.+..|..+...+..|.+|++|+.
T Consensus 193 ~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~-~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGEAPSPRYGHAMVVVG-NKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred eeeccccccceecccCCCCCCCCCCceEEEEC-CeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeee
Confidence 99999999999999999999999999999995 5577777766 778899999999999999998888999999999999
Q ss_pred EEECCccccceeeeeeccCCCCEEEEEcCCCCC---CcccEEEEeCCCCcccccccCC
Q 006645 405 VTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---YNNEVHVLKPSHKSTLSSKMIE 459 (637)
Q Consensus 405 ~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~---~~~~v~~~d~~~~~~~~~~~~~ 459 (637)
++.++ +++++||.... .+.++|.|+..+..|.......
T Consensus 272 ~~~~~-----------------~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 272 TVSGD-----------------HLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred EEECC-----------------EEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 97755 89999998763 6899999999988776654443
No 8
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=283.34 Aligned_cols=236 Identities=27% Similarity=0.490 Sum_probs=209.8
Q ss_pred eEEeccc--C-----C---CCCCCCcceeEEEECCEEEEEcccCC-CcccCcEEEEEccCCeEEEeeecccccCCCCCCC
Q 006645 172 QWIAPPI--S-----G---QRPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (637)
Q Consensus 172 ~W~~~~~--~-----g---~~p~~R~~~a~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (637)
+|.++++ . + -.|.-|++|+++.+.+++|||||.++ ....|.++.||+.|+.|++....+
T Consensus 55 RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G---------- 124 (392)
T KOG4693|consen 55 RWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG---------- 124 (392)
T ss_pred eEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee----------
Confidence 9998875 0 1 23556999999999999999999765 566789999999999999887764
Q ss_pred CCCCCcccceEEEeCCEEEEEEccCCC-CCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCC-
Q 006645 241 ALLTPCAGHSLIPWENKLLSIAGHTKD-PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAK- 318 (637)
Q Consensus 241 ~~p~~r~~hs~v~~~~~lyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~- 318 (637)
..|.+|.||++|++++.+|||||+..+ ..++++++++|+.|.+|+.+.+.|++|.-|..|+++++++.+|||||....
T Consensus 125 ~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~ 204 (392)
T KOG4693|consen 125 FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDES 204 (392)
T ss_pred ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccC
Confidence 578999999999999999999999766 567889999999999999999999999999999999999999999997532
Q ss_pred -------CCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCC--CCcCcEEEEECCCCeeEec
Q 006645 319 -------RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA--ACFNDLHVLDLQTMEWSRP 389 (637)
Q Consensus 319 -------~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~--~~~~dl~~~d~~t~~W~~l 389 (637)
..|.+.|-.+|+.|..|...+..+..|..|..|++.++ ++.||||||+++. ..+||+|.||+.+..|..+
T Consensus 205 gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I 283 (392)
T KOG4693|consen 205 GPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVI 283 (392)
T ss_pred CCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcceeecccccchheee
Confidence 23678899999999999999888888999999999999 6779999998863 5689999999999999999
Q ss_pred ccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC
Q 006645 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (637)
Q Consensus 390 ~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~ 435 (637)
...|..|.+|..+++++.++ ++|+|||..
T Consensus 284 ~~~Gk~P~aRRRqC~~v~g~-----------------kv~LFGGTs 312 (392)
T KOG4693|consen 284 SVRGKYPSARRRQCSVVSGG-----------------KVYLFGGTS 312 (392)
T ss_pred eccCCCCCcccceeEEEECC-----------------EEEEecCCC
Confidence 99999999999999999976 899999954
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=326.92 Aligned_cols=244 Identities=12% Similarity=0.187 Sum_probs=209.6
Q ss_pred cccccc----eEEecccCCCCCCCCcceeEEEECCEEEEEcccC-CCcccCcEEEEEccCCeEEEeeecccccCCCCCCC
Q 006645 166 SVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (637)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (637)
.++.|| +|..+++ +|.+|.+|++++++++|||+||.. +...++++++||+.+++|..+++
T Consensus 273 ~v~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~------------ 337 (557)
T PHA02713 273 CILVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP------------ 337 (557)
T ss_pred CEEEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC------------
Confidence 345554 8999985 899999999999999999999975 44567899999999999998854
Q ss_pred CCCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCC-
Q 006645 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR- 319 (637)
Q Consensus 241 ~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~- 319 (637)
+|.+|.+|+++.++++||++||.++. ...+++++|||.+++|..+++ +|.+|.++++++++++||++||.+...
T Consensus 338 -m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 338 -MIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred -CcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCC---CCcccccccEEEECCEEEEEeCCCcccc
Confidence 57899999999999999999998654 457889999999999999876 899999999999999999999986432
Q ss_pred ----------------CCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCC-cCcEEEEECC
Q 006645 320 ----------------SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC-FNDLHVLDLQ 382 (637)
Q Consensus 320 ----------------~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~-~~dl~~~d~~ 382 (637)
..++.+++|||.+++|+.+++ +|.+|..++++++ +++|||+||.++... .+.+++||+.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---FWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCC---CCcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCC
Confidence 126789999999999999875 4788999998888 567999999865433 3468999999
Q ss_pred C-CeeEecccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCCcccEEEEeCCCCccccc
Q 006645 383 T-MEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSS 455 (637)
Q Consensus 383 t-~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~~~~~v~~~d~~~~~~~~~ 455 (637)
+ ++|+.++ ++|.+|..++++++++ +||++||+++. .++.+||+.++.|...
T Consensus 489 ~~~~W~~~~---~m~~~r~~~~~~~~~~-----------------~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 489 TYNGWELIT---TTESRLSALHTILHDN-----------------TIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCeeEcc---ccCcccccceeEEECC-----------------EEEEEeeecce--eehhhcCcccccccch
Confidence 9 8999986 7899999999999976 99999999873 4799999999988753
No 10
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=286.07 Aligned_cols=250 Identities=22% Similarity=0.464 Sum_probs=215.2
Q ss_pred CCCCCCcceeEEEE--CCEEEEEccc--CCC--cccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEe
Q 006645 181 QRPKARYEHGAAVV--QDKMYIYGGN--HNG--RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW 254 (637)
Q Consensus 181 ~~p~~R~~~a~~~~--~~~lyv~GG~--~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~ 254 (637)
++|.||..+++++. .+.|++|||. ++. ..+|++|+||+.++.|+++.. |..|++|++|.+|++
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-----------pn~P~pRsshq~va~ 130 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-----------PNAPPPRSSHQAVAV 130 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-----------CCCcCCCccceeEEe
Confidence 47899999888876 3689999993 332 568999999999999999966 456899999999999
Q ss_pred C-CEEEEEEccCCCCC-----cceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCC---CCCCCCce
Q 006645 255 E-NKLLSIAGHTKDPS-----EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDA---KRSLLNDL 325 (637)
Q Consensus 255 ~-~~lyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~n~i 325 (637)
. |.||+|||.-.+++ ...++|.||+.+++|.++...| .|.||++|.+++..++|++|||+.. ...|.||+
T Consensus 131 ~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDv 209 (521)
T KOG1230|consen 131 PSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDV 209 (521)
T ss_pred ccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeee
Confidence 6 89999999766532 3679999999999999998755 8999999999999999999999843 33578999
Q ss_pred EEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCC---------CCCcCcEEEEECCC-----CeeEeccc
Q 006645 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQT-----MEWSRPTQ 391 (637)
Q Consensus 326 ~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~---------~~~~~dl~~~d~~t-----~~W~~l~~ 391 (637)
|+||++|-+|..+.+.|..|.||++|++.+...+.|||.||++. +...+|+|.+++.+ -.|.++..
T Consensus 210 y~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 210 YAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 99999999999999998899999999999986777999999763 45678999999988 68999999
Q ss_pred CCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC----------CCCcccEEEEeCCCCcccccccC
Q 006645 392 QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN----------GRYNNEVHVLKPSHKSTLSSKMI 458 (637)
Q Consensus 392 ~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~----------~~~~~~v~~~d~~~~~~~~~~~~ 458 (637)
.|..|.||.++++++..+. +-+.|||.- |.+.||+|.||+..+.|....+-
T Consensus 290 ~g~kPspRsgfsv~va~n~----------------kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVAVAKNH----------------KALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred CCCCCCCCCceeEEEecCC----------------ceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 9999999999999998653 899999953 34789999999999988766443
No 11
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.1e-32 Score=304.60 Aligned_cols=240 Identities=18% Similarity=0.290 Sum_probs=202.6
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCC-CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccce
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs 250 (637)
+|..++. +| .+..|+++++++.|||+||..+ ....+++++||+.+++|..+++ +|.+|.+|+
T Consensus 275 ~~~~~~~---~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-------------~~~~R~~~~ 337 (534)
T PHA03098 275 EINTIID---IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE-------------LIYPRKNPG 337 (534)
T ss_pred hcccccC---cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC-------------CCcccccce
Confidence 5666542 33 3456799999999999999765 3456799999999999988744 468899999
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEEC
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~ 330 (637)
++.++++||++||.... ...+++++||+.+++|...++ +|.+|.+|++++++++||++||.......++++++||+
T Consensus 338 ~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred EEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCC---cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeC
Confidence 99999999999998743 567899999999999999876 88999999999999999999998655555799999999
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCC---CcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEE
Q 006645 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA---CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (637)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~---~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~ 407 (637)
.+++|+.+.+ +|.+|.+|+++++ +++|||+||.+... .++.+++||+.+++|+.++ .+|.+|..|+++++
T Consensus 414 ~t~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~ 486 (534)
T PHA03098 414 NTNKWSKGSP---LPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIF 486 (534)
T ss_pred CCCeeeecCC---CCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEEE
Confidence 9999999864 4889999998887 67899999976433 2577999999999999986 67788999999888
Q ss_pred CCccccceeeeeeccCCCCEEEEEcCCCCC-CcccEEEEeCCCCcccccc
Q 006645 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (637)
Q Consensus 408 ~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~ 456 (637)
++ +||++||.++. ..+++++||+.++.|....
T Consensus 487 ~~-----------------~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 487 NN-----------------KIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CC-----------------EEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 65 89999998765 4889999999999886543
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=299.74 Aligned_cols=233 Identities=23% Similarity=0.392 Sum_probs=206.7
Q ss_pred CCCCCcceeEEEECCEEEEEcccCC-CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEE
Q 006645 182 RPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLS 260 (637)
Q Consensus 182 ~p~~R~~~a~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv 260 (637)
++.+|..... ...+.||++||..+ ....+.+..||+.++.|..++++ |.+|..+++++++|+||+
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~~~r~~~~~~~~~~~lYv 337 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------PSPRCRVGVAVLNGKLYV 337 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------CcccccccEEEECCEEEE
Confidence 4445544443 56689999999876 78889999999999999999764 789999999999999999
Q ss_pred EEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecC
Q 006645 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (637)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~ 340 (637)
+||++.....++++++||+.+++|..+++ |+.+|+++++++++|.||++||.++.. +++++++|||.+++|..+.+
T Consensus 338 ~GG~~~~~~~l~~ve~YD~~~~~W~~~a~---M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~ 413 (571)
T KOG4441|consen 338 VGGYDSGSDRLSSVERYDPRTNQWTPVAP---MNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAP 413 (571)
T ss_pred EccccCCCcccceEEEecCCCCceeccCC---ccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCC
Confidence 99998533678999999999999999877 899999999999999999999999766 58999999999999999975
Q ss_pred CCCCCCcccccEEEEEcCCEEEEEeCCCCCC-CcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCccccceeeee
Q 006645 341 VGVPPSPRSDHAAAVHAERYLLIFGGGSHAA-CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVV 419 (637)
Q Consensus 341 ~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~-~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~ 419 (637)
+ +.+|++|+++++ +++||++||.++.. +++.+.+||+.+++|+.++ +++.+|.+|+++++++
T Consensus 414 m---~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~---------- 476 (571)
T KOG4441|consen 414 M---LTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNG---------- 476 (571)
T ss_pred C---CcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECC----------
Confidence 5 679999999998 67899999988877 8999999999999999986 8999999999999976
Q ss_pred eccCCCCEEEEEcCCCCC-CcccEEEEeCCCCcccccc
Q 006645 420 SSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (637)
Q Consensus 420 ~~~~g~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~ 456 (637)
.||++||+++. ....+++|||.++.|....
T Consensus 477 -------~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 477 -------KIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred -------EEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 89999999984 5777999999999887764
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.7e-31 Score=276.84 Aligned_cols=226 Identities=18% Similarity=0.237 Sum_probs=184.4
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEE-EeeecccccCCCCCCCCCCCCcccce
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWS-KIQAKAVAESTESPSPALLTPCAGHS 250 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~p~~r~~hs 250 (637)
+|..++. +|.+|..+++++++++||++||..+...++++++||+.+++|. ..... +++|.+|.+|+
T Consensus 52 ~W~~~~~---lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~----------~~lp~~~~~~~ 118 (323)
T TIGR03548 52 KWVKDGQ---LPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETI----------GNLPFTFENGS 118 (323)
T ss_pred eEEEccc---CCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEc----------CCCCcCccCce
Confidence 6988874 8999998999999999999999877777899999999999983 11121 35688999999
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCC-CCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEE
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPP-VSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd 329 (637)
++.++++|||+||.... ...+++++||+.+++|+.+++ +| .+|..|++++++++||||||.+... .+++++||
T Consensus 119 ~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd 192 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPD---FPGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYS 192 (323)
T ss_pred EEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCC---CCCCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEe
Confidence 99999999999997543 457899999999999999975 45 4789999999999999999986532 46799999
Q ss_pred CCCCceEEecCCCC--CCCcccccEEEEEcCCEEEEEeCCCCCC--------------------------------CcCc
Q 006645 330 LETMTWDEIDAVGV--PPSPRSDHAAAVHAERYLLIFGGGSHAA--------------------------------CFND 375 (637)
Q Consensus 330 ~~t~~W~~~~~~~~--~p~~r~~h~~~~~~~~~l~v~GG~~~~~--------------------------------~~~d 375 (637)
+.+++|+.+.+... .|.++..++++++.+++|||+||.+... ..++
T Consensus 193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (323)
T TIGR03548 193 PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK 272 (323)
T ss_pred cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence 99999999976532 3444556666666678999999976421 1367
Q ss_pred EEEEECCCCeeEecccCCCCC-CCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCC
Q 006645 376 LHVLDLQTMEWSRPTQQGEIP-TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG 436 (637)
Q Consensus 376 l~~~d~~t~~W~~l~~~~~~p-~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~ 436 (637)
+++||+.+++|+.++ .+| .+|..++++++++ .||++||...
T Consensus 273 v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~-----------------~iyv~GG~~~ 314 (323)
T TIGR03548 273 ILIYNVRTGKWKSIG---NSPFFARCGAALLLTGN-----------------NIFSINGELK 314 (323)
T ss_pred EEEEECCCCeeeEcc---cccccccCchheEEECC-----------------EEEEEecccc
Confidence 999999999999986 454 5899999999876 8999999643
No 14
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=4e-31 Score=288.18 Aligned_cols=253 Identities=38% Similarity=0.674 Sum_probs=222.6
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCC-CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccce
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs 250 (637)
.|.....+|..|.+|++|+++.++++||+|||... ...+++++.||+.|++|..+.+.+ .+|++|.+|+
T Consensus 99 ~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~----------~~P~~r~~Hs 168 (482)
T KOG0379|consen 99 LWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTG----------DPPPPRAGHS 168 (482)
T ss_pred ccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcC----------CCCCCcccce
Confidence 89999999999999999999999999999999874 566899999999999999998874 4689999999
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEEC
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~ 330 (637)
++.++++||||||.+......|++|+||+.+.+|.++.+.|..|.||.+|++++++++++||||.+....+++|+|+||+
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl 248 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL 248 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec
Confidence 99999999999999988668999999999999999999999999999999999999999999999866678999999999
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCC--CCcCcEEEEECCCCeeEecccCC-CCCCCCcccEEEEE
Q 006645 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA--ACFNDLHVLDLQTMEWSRPTQQG-EIPTPRAGHAGVTI 407 (637)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~--~~~~dl~~~d~~t~~W~~l~~~~-~~p~~R~~hs~~~~ 407 (637)
.+..|..+...+..|.+|.+|+.++. +.+++|+||.... ..+.++|.||..+..|..+...+ ..|.+|..|+.+.+
T Consensus 249 ~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 327 (482)
T KOG0379|consen 249 STWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELI 327 (482)
T ss_pred ccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceee
Confidence 99999999999999999999999965 7779999998775 25889999999999999998776 77899999998887
Q ss_pred CCccccceeeeeeccCCCCEEEEEcCCC--CCCcccEEEEeCC
Q 006645 408 GENWFLGLSLVVSSYSGEDVIVAFGGYN--GRYNNEVHVLKPS 448 (637)
Q Consensus 408 ~~~~yiG~s~~~~~~~g~~~l~v~GG~~--~~~~~~v~~~d~~ 448 (637)
... +...+.++||.. +...++++.+...
T Consensus 328 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (482)
T KOG0379|consen 328 DEL-------------GKDGLGILGGNQILGERLADVFSLQIK 357 (482)
T ss_pred ccC-------------CccceeeecCccccccchhhccccccc
Confidence 653 233667777743 3355666655443
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=2.6e-30 Score=270.46 Aligned_cols=239 Identities=21% Similarity=0.304 Sum_probs=184.9
Q ss_pred CCCCcceeEEEECCEEEEEcccCCC----------cccCcEEEEEccC--CeEEEeeecccccCCCCCCCCCCCCcccce
Q 006645 183 PKARYEHGAAVVQDKMYIYGGNHNG----------RYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (637)
Q Consensus 183 p~~R~~~a~~~~~~~lyv~GG~~~~----------~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs 250 (637)
+..+.++.++++++.|||+||.+.. ..++++++|+..+ .+|..+.+ +|.+|..|+
T Consensus 1 ~~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~-------------lp~~r~~~~ 67 (323)
T TIGR03548 1 SLGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ-------------LPYEAAYGA 67 (323)
T ss_pred CCceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc-------------CCccccceE
Confidence 3568899999999999999997532 3457899886333 37988754 478888888
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCceE-eeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEE
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS-TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd 329 (637)
++.++++||++||.... ..++++++||+.+++|. .....+++|.+|..|++++++++||++||..... .++++++||
T Consensus 68 ~~~~~~~lyviGG~~~~-~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd 145 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSS-ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFN 145 (323)
T ss_pred EEEECCEEEEEcCCCCC-CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEc
Confidence 99999999999998754 45789999999999983 1222244899999999999999999999975433 479999999
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCC--CCCCCCcccEEEEE
Q 006645 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQG--EIPTPRAGHAGVTI 407 (637)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~--~~p~~R~~hs~~~~ 407 (637)
+.+++|+.+++. +..+|..|+++++ +++||||||.+.. ..+++++||+.+++|+.++... ..|..+..++++++
T Consensus 146 ~~~~~W~~~~~~--p~~~r~~~~~~~~-~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~ 221 (323)
T TIGR03548 146 LETQEWFELPDF--PGEPRVQPVCVKL-QNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKI 221 (323)
T ss_pred CCCCCeeECCCC--CCCCCCcceEEEE-CCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEE
Confidence 999999998744 1246888888776 6789999998643 3467899999999999987432 23444455655555
Q ss_pred CCccccceeeeeeccCCCCEEEEEcCCCCC---------------------------------CcccEEEEeCCCCcccc
Q 006645 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNGR---------------------------------YNNEVHVLKPSHKSTLS 454 (637)
Q Consensus 408 ~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~---------------------------------~~~~v~~~d~~~~~~~~ 454 (637)
.+ ++|||+||.++. +.+++++||+.++.|..
T Consensus 222 ~~----------------~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 285 (323)
T TIGR03548 222 NE----------------SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKS 285 (323)
T ss_pred CC----------------CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeE
Confidence 42 289999998742 13679999999998876
Q ss_pred cc
Q 006645 455 SK 456 (637)
Q Consensus 455 ~~ 456 (637)
..
T Consensus 286 ~~ 287 (323)
T TIGR03548 286 IG 287 (323)
T ss_pred cc
Confidence 54
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=2.9e-30 Score=272.88 Aligned_cols=234 Identities=21% Similarity=0.346 Sum_probs=182.8
Q ss_pred ceEEecccCCCCC-CCCcceeEEEECCEEEEEcccCCC------cccCcEEEEEccCCeEEEeeecccccCCCCCCCCCC
Q 006645 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGNHNG------RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (637)
Q Consensus 171 ~~W~~~~~~g~~p-~~R~~~a~~~~~~~lyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (637)
++|..+++ +| .+|..|++++++++|||+||.... ..++++++||+.+++|+.++. .+|
T Consensus 41 ~~W~~l~~---~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~------------~~p 105 (346)
T TIGR03547 41 KGWQKIAD---FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT------------RSP 105 (346)
T ss_pred CCceECCC---CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC------------CCC
Confidence 48999885 77 589999999999999999997532 257899999999999999853 136
Q ss_pred CCcccceEE-EeCCEEEEEEccCCCC---------------------------------CcceeEEEEECCCCceEeecc
Q 006645 244 TPCAGHSLI-PWENKLLSIAGHTKDP---------------------------------SEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 244 ~~r~~hs~v-~~~~~lyv~GG~~~~~---------------------------------~~~~~v~~yd~~t~~W~~~~~ 289 (637)
.+|.+|+++ .++++||++||+.... ..++++++||+.+++|+.+++
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~ 185 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE 185 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc
Confidence 778888877 6899999999986320 014789999999999999976
Q ss_pred CCCCCC-CCCceEEEEECCEEEEEeCCCCCCCCCCceEEEEC--CCCceEEecCCCCCCCcc-------cccEEEEEcCC
Q 006645 290 YGKPPV-SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL--ETMTWDEIDAVGVPPSPR-------SDHAAAVHAER 359 (637)
Q Consensus 290 ~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~--~t~~W~~~~~~~~~p~~r-------~~h~~~~~~~~ 359 (637)
+|. +|.++++++++++|||+||.........+++.|++ .+++|..+.++ |.+| .+|+++++ ++
T Consensus 186 ---~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m---~~~r~~~~~~~~~~~a~~~-~~ 258 (346)
T TIGR03547 186 ---NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL---PPPKSSSQEGLAGAFAGIS-NG 258 (346)
T ss_pred ---CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC---CCCCCCccccccEEeeeEE-CC
Confidence 664 68899999999999999998654433456766664 67799998765 3433 35555665 77
Q ss_pred EEEEEeCCCCCC-----------------CcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCccccceeeeeecc
Q 006645 360 YLLIFGGGSHAA-----------------CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSY 422 (637)
Q Consensus 360 ~l~v~GG~~~~~-----------------~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~ 422 (637)
+|||+||.+... .+..+.+||+.+++|+.+. .+|.+|..++++++++
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~------------- 322 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNN------------- 322 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCC-------------
Confidence 899999975211 1235889999999999885 7888999888887765
Q ss_pred CCCCEEEEEcCCCC--CCcccEEEEe
Q 006645 423 SGEDVIVAFGGYNG--RYNNEVHVLK 446 (637)
Q Consensus 423 ~g~~~l~v~GG~~~--~~~~~v~~~d 446 (637)
+|||+||.+. ...++|+.+-
T Consensus 323 ----~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 323 ----GVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred ----EEEEEeccCCCCCEeeeEEEEE
Confidence 8999999864 4678887764
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=6.3e-30 Score=280.27 Aligned_cols=210 Identities=18% Similarity=0.251 Sum_probs=183.4
Q ss_pred EEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCc
Q 006645 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSE 270 (637)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~ 270 (637)
++.+++.||++||..+....+++++||+.+++|..+++ ++.+|..++++.++++||++||...
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~-------------m~~~r~~~~~v~~~~~iYviGG~~~---- 329 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP-------------MNSPRLYASGVPANNKLYVVGGLPN---- 329 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC-------------CCchhhcceEEEECCEEEEECCcCC----
Confidence 45589999999998766778899999999999999965 4789999999999999999999853
Q ss_pred ceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccc
Q 006645 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (637)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (637)
.+++++||+.+++|..+++ +|.+|.+|++++++++||++||.++. .+.+.+|||.+++|+.+++ +|.||..
T Consensus 330 ~~sve~ydp~~n~W~~~~~---l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~r~~ 400 (480)
T PHA02790 330 PTSVERWFHGDAAWVNMPS---LLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYPHYK 400 (480)
T ss_pred CCceEEEECCCCeEEECCC---CCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCcccc
Confidence 2578999999999999976 89999999999999999999998543 3679999999999999865 4789999
Q ss_pred cEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEE
Q 006645 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (637)
Q Consensus 351 h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v 430 (637)
|+++++ +++|||+||. +.+||+.+++|+.++ +++.+|..++++++++ +||+
T Consensus 401 ~~~~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~-----------------~IYv 451 (480)
T PHA02790 401 SCALVF-GRRLFLVGRN--------AEFYCESSNTWTLID---DPIYPRDNPELIIVDN-----------------KLLL 451 (480)
T ss_pred ceEEEE-CCEEEEECCc--------eEEecCCCCcEeEcC---CCCCCccccEEEEECC-----------------EEEE
Confidence 988887 6789999984 578999999999986 6789999999999976 8999
Q ss_pred EcCCCCC-CcccEEEEeCCCCccccc
Q 006645 431 FGGYNGR-YNNEVHVLKPSHKSTLSS 455 (637)
Q Consensus 431 ~GG~~~~-~~~~v~~~d~~~~~~~~~ 455 (637)
+||+++. ..+.+++||+.++.|...
T Consensus 452 iGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 452 IGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCcCCCcccceEEEEECCCCeEEec
Confidence 9998754 568899999999988654
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=7.2e-30 Score=272.15 Aligned_cols=241 Identities=20% Similarity=0.327 Sum_probs=185.7
Q ss_pred ceEEecccCCCCC-CCCcceeEEEECCEEEEEcccCC------CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCC
Q 006645 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGNHN------GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (637)
Q Consensus 171 ~~W~~~~~~g~~p-~~R~~~a~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (637)
++|..+++ +| .+|.+|++++++++|||+||... ...++++++||+.+++|+.+++. .|
T Consensus 62 ~~W~~l~~---~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~------------~p 126 (376)
T PRK14131 62 KGWTKIAA---FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR------------SP 126 (376)
T ss_pred CCeEECCc---CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC------------CC
Confidence 47998875 55 58999999999999999999754 13578999999999999998642 26
Q ss_pred CCcccceEEE-eCCEEEEEEccCCC---------------------------------CCcceeEEEEECCCCceEeecc
Q 006645 244 TPCAGHSLIP-WENKLLSIAGHTKD---------------------------------PSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 244 ~~r~~hs~v~-~~~~lyv~GG~~~~---------------------------------~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
.++.+|+++. .+++||++||.... ....+++++||+.+++|..+++
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~ 206 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE 206 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc
Confidence 6778888887 79999999997531 0124789999999999999865
Q ss_pred CCCCCC-CCCceEEEEECCEEEEEeCCCCCCCCCCceEE--EECCCCceEEecCCCCCCCcccc-------cEEEEEcCC
Q 006645 290 YGKPPV-SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI--LDLETMTWDEIDAVGVPPSPRSD-------HAAAVHAER 359 (637)
Q Consensus 290 ~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~--yd~~t~~W~~~~~~~~~p~~r~~-------h~~~~~~~~ 359 (637)
+|. +|.+|+++.++++|||+||....+...++++. ||+.+++|+.+..+ |.+|.+ +.++++.++
T Consensus 207 ---~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~ 280 (376)
T PRK14131 207 ---SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNG 280 (376)
T ss_pred ---CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECC
Confidence 664 78889999999999999997544433556664 46788999998755 444421 222333467
Q ss_pred EEEEEeCCCCCC-----------------CcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCccccceeeeeecc
Q 006645 360 YLLIFGGGSHAA-----------------CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSY 422 (637)
Q Consensus 360 ~l~v~GG~~~~~-----------------~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~ 422 (637)
+|||+||.+... ....+.+||+.++.|+.+. .+|.+|..|+++++++
T Consensus 281 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~------------- 344 (376)
T PRK14131 281 VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNN------------- 344 (376)
T ss_pred EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCC-------------
Confidence 899999975311 0124678999999999875 7899999999888866
Q ss_pred CCCCEEEEEcCCCC--CCcccEEEEeCCCCcc
Q 006645 423 SGEDVIVAFGGYNG--RYNNEVHVLKPSHKST 452 (637)
Q Consensus 423 ~g~~~l~v~GG~~~--~~~~~v~~~d~~~~~~ 452 (637)
.|||+||... ...++|++|++..+.+
T Consensus 345 ----~iyv~GG~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 345 ----GVLLIGGETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred ----EEEEEcCCCCCCcEeeeEEEEEEcCCEE
Confidence 8999999754 4789999999887654
No 19
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.2e-30 Score=262.85 Aligned_cols=258 Identities=28% Similarity=0.519 Sum_probs=221.3
Q ss_pred eEEecc-cCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccce
Q 006645 172 QWIAPP-ISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (637)
Q Consensus 172 ~W~~~~-~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs 250 (637)
.|+.+. .+|+.|.||.+|-++++..-|.||||- +....+.+++||..+++|...+..+ ..|++++.|.
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGG-NEGiiDELHvYNTatnqWf~PavrG----------DiPpgcAA~G 86 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGG-NEGIIDELHVYNTATNQWFAPAVRG----------DIPPGCAAFG 86 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCC-cccchhhhhhhccccceeecchhcC----------CCCCchhhcc
Confidence 799875 478999999999999999999999994 4456789999999999999776653 6799999999
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeec----cCCCCCCCCCceEEEEECCEEEEEeCCCC--------C
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK----TYGKPPVSRGGQSVTLVGTSLVIFGGEDA--------K 318 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~----~~g~~p~~r~~~~~~~~~~~lyv~GG~~~--------~ 318 (637)
++..+.+||+|||...-+.+.|++|-+....-.|+++. ..|.+|.||-+|+..+++++.|+|||... -
T Consensus 87 fvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNv 166 (830)
T KOG4152|consen 87 FVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNV 166 (830)
T ss_pred eEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCccccc
Confidence 99999999999999888889999888877777888774 45788999999999999999999999632 1
Q ss_pred CCCCCceEEEECCCC----ceEEecCCCCCCCcccccEEEEEc-----CCEEEEEeCCCCCCCcCcEEEEECCCCeeEec
Q 006645 319 RSLLNDLHILDLETM----TWDEIDAVGVPPSPRSDHAAAVHA-----ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (637)
Q Consensus 319 ~~~~n~i~~yd~~t~----~W~~~~~~~~~p~~r~~h~~~~~~-----~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l 389 (637)
-.|+||+|++++.-. -|..+...|..|.||..|+++++. ..+||||||+++. .+.|+|.+|+++.+|.++
T Consensus 167 PrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp 245 (830)
T KOG4152|consen 167 PRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKP 245 (830)
T ss_pred chhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccc
Confidence 258999999998743 599999999999999999999982 2479999998754 489999999999999999
Q ss_pred ccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC-----C----------CCcccEEEEeCCCCcccc
Q 006645 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-----G----------RYNNEVHVLKPSHKSTLS 454 (637)
Q Consensus 390 ~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~-----~----------~~~~~v~~~d~~~~~~~~ 454 (637)
...|..|.||..|++++|++ ++|||||+- + +..+.+-++++.+..|..
T Consensus 246 ~~~G~~PlPRSLHsa~~IGn-----------------KMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~t 308 (830)
T KOG4152|consen 246 SLSGVAPLPRSLHSATTIGN-----------------KMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWET 308 (830)
T ss_pred cccCCCCCCcccccceeecc-----------------eeEEecceeeeeccccccccccceeeeccceeeeeecchheee
Confidence 99999999999999999977 899999962 1 146788889998887765
Q ss_pred cccC
Q 006645 455 SKMI 458 (637)
Q Consensus 455 ~~~~ 458 (637)
..+.
T Consensus 309 l~~d 312 (830)
T KOG4152|consen 309 LLMD 312 (830)
T ss_pred eeec
Confidence 5443
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=7.2e-29 Score=262.23 Aligned_cols=256 Identities=20% Similarity=0.234 Sum_probs=189.2
Q ss_pred CCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEc--cCCeEEEeeecccccCCCCCCCCCC-CCcccceEEEeCCE
Q 006645 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDL--RSWAWSKIQAKAVAESTESPSPALL-TPCAGHSLIPWENK 257 (637)
Q Consensus 181 ~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~p-~~r~~hs~v~~~~~ 257 (637)
++|.+|..+++|+++++|||+||... +++++||+ .+++|..++++ | .+|.+|+++.++++
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~-------------p~~~R~~~~~~~~~~~ 65 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADF-------------PGGPRNQAVAAAIDGK 65 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCC-------------CCCCcccceEEEECCE
Confidence 47889999999999999999999632 67899996 56899998654 5 58999999999999
Q ss_pred EEEEEccCCCC-----CcceeEEEEECCCCceEeeccCCCCCCCCCceEEE-EECCEEEEEeCCCCCC------------
Q 006645 258 LLSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVT-LVGTSLVIFGGEDAKR------------ 319 (637)
Q Consensus 258 lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~GG~~~~~------------ 319 (637)
|||+||..... ..++++++||+.+++|+.++. .+|.+|.+++++ +++++||++||.+...
T Consensus 66 iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 143 (346)
T TIGR03547 66 LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD 143 (346)
T ss_pred EEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence 99999986432 246899999999999999963 267778888776 6899999999986320
Q ss_pred ---------------------CCCCceEEEECCCCceEEecCCCCCCC-cccccEEEEEcCCEEEEEeCCCCCC-CcCcE
Q 006645 320 ---------------------SLLNDLHILDLETMTWDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSHAA-CFNDL 376 (637)
Q Consensus 320 ---------------------~~~n~i~~yd~~t~~W~~~~~~~~~p~-~r~~h~~~~~~~~~l~v~GG~~~~~-~~~dl 376 (637)
.+++++++||+.+++|+.+.++ |. +|..|+++++ +++||||||..... ...++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 219 (346)
T TIGR03547 144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEV 219 (346)
T ss_pred ccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC---CCCcCCCceEEEE-CCEEEEEeeeeCCCccchhe
Confidence 1247899999999999998644 54 6788877776 67899999975433 23456
Q ss_pred EEEEC--CCCeeEecccCCCCCCCC-------cccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC----------
Q 006645 377 HVLDL--QTMEWSRPTQQGEIPTPR-------AGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---------- 437 (637)
Q Consensus 377 ~~~d~--~t~~W~~l~~~~~~p~~R-------~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~---------- 437 (637)
+.||+ .++.|+.++ .+|.+| .+|+++++++ +|||+||.+..
T Consensus 220 ~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~-----------------~Iyv~GG~~~~~~~~~~~~~~ 279 (346)
T TIGR03547 220 KQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNG-----------------VLLVAGGANFPGAQENYKNGK 279 (346)
T ss_pred EEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECC-----------------EEEEeecCCCCCchhhhhcCC
Confidence 66654 677999886 455544 3555666654 89999997521
Q ss_pred --------CcccEEEEeCCCCcccccc-cCCCCCCCCccccccCCCCCcccchh
Q 006645 438 --------YNNEVHVLKPSHKSTLSSK-MIETPVPDSVSAVQNNTNPTRDLESE 482 (637)
Q Consensus 438 --------~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e 482 (637)
..+.+.+||+.++.|.... ++..+ ...+.....+.+..+|++
T Consensus 280 ~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~---~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 280 LYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL---AYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred ccccCCCCceeEeeEEEecCCcccccCCCCCCc---eeeEEEEcCCEEEEEecc
Confidence 1246889999999776543 33222 222333445566666664
No 21
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=282.21 Aligned_cols=200 Identities=15% Similarity=0.201 Sum_probs=173.7
Q ss_pred ccccccc----eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCC
Q 006645 165 GSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (637)
Q Consensus 165 ~~~~~~~----~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (637)
..++.|| .|..+++ ||.+|.+|++++++++||++||..+...++++++||+.+++|..+++
T Consensus 320 ~~v~~Yd~~~n~W~~~~~---m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~------------ 384 (557)
T PHA02713 320 NKVYKINIENKIHVELPP---MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD------------ 384 (557)
T ss_pred ceEEEEECCCCeEeeCCC---CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC------------
Confidence 4566665 8998885 89999999999999999999998777778899999999999999855
Q ss_pred CCCCCcccceEEEeCCEEEEEEccCCCC-----------------CcceeEEEEECCCCceEeeccCCCCCCCCCceEEE
Q 006645 241 ALLTPCAGHSLIPWENKLLSIAGHTKDP-----------------SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVT 303 (637)
Q Consensus 241 ~~p~~r~~hs~v~~~~~lyv~GG~~~~~-----------------~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 303 (637)
+|.+|.+|++++++++|||+||.+... ...+++++|||.+++|+.+++ +|.+|..++++
T Consensus 385 -mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m~~~r~~~~~~ 460 (557)
T PHA02713 385 -MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---FWTGTIRPGVV 460 (557)
T ss_pred -CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC---CCcccccCcEE
Confidence 578999999999999999999986431 136789999999999999976 88999999999
Q ss_pred EECCEEEEEeCCCCCCCCCCceEEEECCC-CceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECC
Q 006645 304 LVGTSLVIFGGEDAKRSLLNDLHILDLET-MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ 382 (637)
Q Consensus 304 ~~~~~lyv~GG~~~~~~~~n~i~~yd~~t-~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~ 382 (637)
+++++||++||.++.....+.+++|||.+ ++|+.+++ +|.+|..++++++ +++||++||.++. ..+.+||+.
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r~~~~~~~~-~~~iyv~Gg~~~~---~~~e~yd~~ 533 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRLSALHTILH-DNTIMMLHCYESY---MLQDTFNVY 533 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCcccccceeEEE-CCEEEEEeeecce---eehhhcCcc
Confidence 99999999999875444446789999999 89999874 5899999999998 6789999998753 478999999
Q ss_pred CCeeEecc
Q 006645 383 TMEWSRPT 390 (637)
Q Consensus 383 t~~W~~l~ 390 (637)
+++|+.+.
T Consensus 534 ~~~W~~~~ 541 (557)
T PHA02713 534 TYEWNHIC 541 (557)
T ss_pred cccccchh
Confidence 99999875
No 22
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.3e-29 Score=255.39 Aligned_cols=258 Identities=30% Similarity=0.581 Sum_probs=218.1
Q ss_pred ccccccc----eEEecccCCCCCCCCcceeEEEECCEEEEEcccC-CCcccCcEEEEEccCCeEEEeeecccccCCCCCC
Q 006645 165 GSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPS 239 (637)
Q Consensus 165 ~~~~~~~----~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~ 239 (637)
+.+.+|| +|......|+.|.+-..|..+..|.+||+|||.- -+++.|++|-+......|+++.+.. +++
T Consensus 57 DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~------p~n 130 (830)
T KOG4152|consen 57 DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKT------PKN 130 (830)
T ss_pred hhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCC------CCC
Confidence 4455665 9999999999999999999999999999999964 4789999999888889999997764 334
Q ss_pred CCCCCCcccceEEEeCCEEEEEEccCCC--------CCcceeEEEEECCCC----ceEeeccCCCCCCCCCceEEEEE--
Q 006645 240 PALLTPCAGHSLIPWENKLLSIAGHTKD--------PSEIIQVKVFDLQTC----SWSTLKTYGKPPVSRGGQSVTLV-- 305 (637)
Q Consensus 240 ~~~p~~r~~hs~v~~~~~lyv~GG~~~~--------~~~~~~v~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~-- 305 (637)
..+|.+|.||++..++++.|+|||...+ +.++|++|.+++.-+ .|..+.+.|..|++|-.|+++++
T Consensus 131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e 210 (830)
T KOG4152|consen 131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE 210 (830)
T ss_pred CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe
Confidence 5678999999999999999999998654 346899999998754 49999999999999999999998
Q ss_pred ----CCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCC------------
Q 006645 306 ----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH------------ 369 (637)
Q Consensus 306 ----~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~------------ 369 (637)
..++|||||.++-+ +.|+|.+|++|.+|.++...|..|.||+-|+++++ +++||||||.-.
T Consensus 211 KDs~~skmvvyGGM~G~R--LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~he 287 (830)
T KOG4152|consen 211 KDSKKSKMVVYGGMSGCR--LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHE 287 (830)
T ss_pred ccCCcceEEEEccccccc--ccceeEEecceeecccccccCCCCCCcccccceee-cceeEEecceeeeecccccccccc
Confidence 23899999987764 89999999999999999999999999999999998 677999999421
Q ss_pred --CCCcCcEEEEECCCCeeEecccC----CCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC------
Q 006645 370 --AACFNDLHVLDLQTMEWSRPTQQ----GEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR------ 437 (637)
Q Consensus 370 --~~~~~dl~~~d~~t~~W~~l~~~----~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~------ 437 (637)
=.+.+.+-++|+.+..|..+-.. ...|.+|.+|+++.+++ +||+-.|.+|-
T Consensus 288 kEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigt-----------------RlYiWSGRDGYrKAwnn 350 (830)
T KOG4152|consen 288 KEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGT-----------------RLYIWSGRDGYRKAWNN 350 (830)
T ss_pred ceeeeccceeeeeecchheeeeeeccccccccccccccceeEEecc-----------------EEEEEeccchhhHhhcc
Confidence 13567899999999999987321 23689999999999977 89999998762
Q ss_pred --CcccEEEEeCC
Q 006645 438 --YNNEVHVLKPS 448 (637)
Q Consensus 438 --~~~~v~~~d~~ 448 (637)
...|+|.+|.+
T Consensus 351 QVCCkDlWyLdTe 363 (830)
T KOG4152|consen 351 QVCCKDLWYLDTE 363 (830)
T ss_pred ccchhhhhhhccc
Confidence 45677777754
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=2e-29 Score=250.89 Aligned_cols=210 Identities=29% Similarity=0.567 Sum_probs=183.6
Q ss_pred ceEEecccCCCCCCCCcceeEEEEC-CEEEEEcccCC------CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCC
Q 006645 171 DQWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHN------GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (637)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~a~~~~~-~~lyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (637)
++|.++.. ...|+||++|.+|++. |.||+|||... ...+.|+|.||+.|++|.++...+ .|
T Consensus 108 ~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-----------~P 175 (521)
T KOG1230|consen 108 NEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-----------GP 175 (521)
T ss_pred cceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-----------CC
Confidence 39998764 3578899999999997 89999999532 134689999999999999998754 68
Q ss_pred CCcccceEEEeCCEEEEEEccCCC---CCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEE-CCEEEEEeCCC---
Q 006645 244 TPCAGHSLIPWENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGED--- 316 (637)
Q Consensus 244 ~~r~~hs~v~~~~~lyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~--- 316 (637)
.+|+||.|+++..+|++|||+... ..+.|++|+||++|.+|.++.+.|.-|.||++|++.+. .+.|||+||+.
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 999999999999999999998665 34689999999999999999998888999999999998 89999999984
Q ss_pred -----CCCCCCCceEEEECCC-----CceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCC---------CCCcCcEE
Q 006645 317 -----AKRSLLNDLHILDLET-----MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLH 377 (637)
Q Consensus 317 -----~~~~~~n~i~~yd~~t-----~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~---------~~~~~dl~ 377 (637)
..+..++|+|.+++.+ -.|..+.+.|..|.||.++++++..+++.|.|||... +.++||+|
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy 335 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLY 335 (521)
T ss_pred hhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhh
Confidence 2345689999999998 6899999999999999999999999989999999543 45789999
Q ss_pred EEECCCCeeEecccC
Q 006645 378 VLDLQTMEWSRPTQQ 392 (637)
Q Consensus 378 ~~d~~t~~W~~l~~~ 392 (637)
.||+..+.|......
T Consensus 336 ~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 336 FFDLTRNRWSEGQLQ 350 (521)
T ss_pred heecccchhhHhhhc
Confidence 999999999987544
No 24
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=2.2e-28 Score=273.53 Aligned_cols=202 Identities=23% Similarity=0.378 Sum_probs=176.2
Q ss_pred cccccc----eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCC
Q 006645 166 SVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPA 241 (637)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 241 (637)
.+..|| +|..++. +|.+|.+|++++++++||++||..+....+++++||+.+++|+.+++
T Consensus 312 ~v~~yd~~~~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~------------- 375 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPE---LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP------------- 375 (534)
T ss_pred cEEEEeCCCCeeeECCC---CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC-------------
Confidence 455554 8998875 88899999999999999999998877788999999999999998754
Q ss_pred CCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCC-
Q 006645 242 LLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS- 320 (637)
Q Consensus 242 ~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~- 320 (637)
+|.+|.+|+++.++++||++||.......++++++||+.+++|..+++ +|.+|.+|+++.++++||++||.+....
T Consensus 376 lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 376 LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC---CCccccCceEEEECCEEEEECCccCCCCC
Confidence 478999999999999999999986655567899999999999999876 7899999999999999999999864332
Q ss_pred -CCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 321 -LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 321 -~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
..+.+++||+.+++|+.++. +|.+|..|+++++ ++.|||+||.+.....+++++||+.+++|+.+.
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSS---LNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred cccceEEEecCCCCceeeCCC---CCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 25679999999999999864 4778999999887 678999999887766889999999999999875
No 25
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=205.97 Aligned_cols=88 Identities=28% Similarity=0.539 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcccCCCCcccccccCCCChHHHHHHhhhheeeeeCCCCCCCCCCCCHhhhHHHHHHhcCCCCCHHHHHH
Q 006645 13 PERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMR 92 (637)
Q Consensus 13 ~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~~ 92 (637)
.+.|++|+.+|+... ....++++++|+|||||||||+|||++++|++||+++|+||+||++++|||++|||+
T Consensus 2 ~~~F~~A~~~v~~~~--------~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~ 73 (90)
T PTZ00458 2 ADLFEECVSFINSLP--------KTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKK 73 (90)
T ss_pred hHHHHHHHHHHHhCC--------CCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 467999999996311 123799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccc
Q 006645 93 LFVKILEEEDPGWYSR 108 (637)
Q Consensus 93 ~yv~~~~~~~~~~~~~ 108 (637)
+||++|+++.|.|...
T Consensus 74 ~YI~l~~~l~~~w~~~ 89 (90)
T PTZ00458 74 RYVEIVTELFPNWEKG 89 (90)
T ss_pred HHHHHHHHHhhccccC
Confidence 9999999999999764
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=2e-27 Score=253.32 Aligned_cols=263 Identities=18% Similarity=0.209 Sum_probs=188.9
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEcc--CCeEEEeeecccccCCCCCCCCCCCCcccc
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p~~r~~h 249 (637)
.+..+++ +|.+|..+++++++++|||+||... +.+++||+. +++|..+++++ ..+|.+|
T Consensus 18 ~~~~l~~---lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p------------~~~r~~~ 78 (376)
T PRK14131 18 NAEQLPD---LPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFP------------GGPREQA 78 (376)
T ss_pred ecccCCC---CCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCC------------CCCcccc
Confidence 4666664 8999998899999999999999633 458999987 47899886531 2579999
Q ss_pred eEEEeCCEEEEEEccCCC-----CCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEE-ECCEEEEEeCCCCCC----
Q 006645 250 SLIPWENKLLSIAGHTKD-----PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKR---- 319 (637)
Q Consensus 250 s~v~~~~~lyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~---- 319 (637)
+++.++++|||+||+... ...++++++||+.+++|..+++ ..|.++.+|++++ .+++||+|||.+...
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 999999999999998651 1346899999999999999975 2477778888777 799999999975310
Q ss_pred -----------------------------CCCCceEEEECCCCceEEecCCCCCCC-cccccEEEEEcCCEEEEEeCCCC
Q 006645 320 -----------------------------SLLNDLHILDLETMTWDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSH 369 (637)
Q Consensus 320 -----------------------------~~~n~i~~yd~~t~~W~~~~~~~~~p~-~r~~h~~~~~~~~~l~v~GG~~~ 369 (637)
..++++++||+.+++|+.+.+. |. +|.+|+++++ +++|||+||...
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~-~~~iYv~GG~~~ 232 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES---PFLGTAGSAVVIK-GNKLWLINGEIK 232 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC---CCCCCCcceEEEE-CCEEEEEeeeEC
Confidence 1257899999999999998643 54 6777777776 678999999643
Q ss_pred C-CCcCcEE--EEECCCCeeEecccCCCCCCCCcc--------cEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCC
Q 006645 370 A-ACFNDLH--VLDLQTMEWSRPTQQGEIPTPRAG--------HAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRY 438 (637)
Q Consensus 370 ~-~~~~dl~--~~d~~t~~W~~l~~~~~~p~~R~~--------hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~~ 438 (637)
. ....+++ .||+.+++|+.+. .+|.+|.+ +.++++++ +|||+||.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~-----------------~iyv~GG~~~~~ 292 (376)
T PRK14131 233 PGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNG-----------------VLLVAGGANFPG 292 (376)
T ss_pred CCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECC-----------------EEEEeeccCCCC
Confidence 2 2334555 4567889999986 55555532 22344543 899999975210
Q ss_pred ------------------cccEEEEeCCCCccccc-ccCCCCCCCCccccccCCCCCcccchh
Q 006645 439 ------------------NNEVHVLKPSHKSTLSS-KMIETPVPDSVSAVQNNTNPTRDLESE 482 (637)
Q Consensus 439 ------------------~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 482 (637)
...+.+||+.++.|... .++.++... ......+.+..+||.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~---~av~~~~~iyv~GG~ 352 (376)
T PRK14131 293 ARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG---VSVSWNNGVLLIGGE 352 (376)
T ss_pred ChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce---EEEEeCCEEEEEcCC
Confidence 13467899999977644 333333222 233344556666664
No 27
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.95 E-value=1.1e-28 Score=200.95 Aligned_cols=85 Identities=36% Similarity=0.635 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHhcccCCCCcccccccCCCChHHHHHHhhhheeeeeCCCCCCCCCCCCHhhhHHHHHHhcCCCCCHHHHH
Q 006645 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (637)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (637)
++++|++|+++|+ .+...+++|++|+|||||||||+|||+.++|++||+++++||+||++++|||++|||
T Consensus 1 ~~~~F~~A~~~v~----------~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~ 70 (85)
T cd00435 1 LQEEFEAAAEKVK----------KLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAM 70 (85)
T ss_pred ChHHHHHHHHHHH----------hCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHH
Confidence 4689999999995 455789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 006645 92 RLFVKILEEEDPGWY 106 (637)
Q Consensus 92 ~~yv~~~~~~~~~~~ 106 (637)
+.||+++++++|.|.
T Consensus 71 ~~YV~~~~~l~~~~~ 85 (85)
T cd00435 71 KAYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999999883
No 28
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=254.36 Aligned_cols=188 Identities=19% Similarity=0.333 Sum_probs=163.9
Q ss_pred ccccccc----eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCC
Q 006645 165 GSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (637)
Q Consensus 165 ~~~~~~~----~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (637)
..++.|| +|..+++ +|.+|..+++++++++||++||..+ .+++++||+.+++|..+++
T Consensus 287 ~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~------------ 348 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPS------------ 348 (480)
T ss_pred CeEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCC------------
Confidence 4455664 8999985 8999999999999999999999643 2679999999999998854
Q ss_pred CCCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCC
Q 006645 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS 320 (637)
Q Consensus 241 ~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 320 (637)
+|.+|.+|++++++++||++||.... .+++++|||.+++|+..++ +|.+|.++++++++++||++||.
T Consensus 349 -l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~~~~~~IYv~GG~----- 416 (480)
T PHA02790 349 -LLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYPHYKSCALVFGRRLFLVGRN----- 416 (480)
T ss_pred -CCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCccccceEEEECCEEEEECCc-----
Confidence 57899999999999999999998543 3679999999999999877 88999999999999999999983
Q ss_pred CCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 321 LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 321 ~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
+.+||+.+++|+.+++ +|.+|..++++++ +++|||+||.++....+.+++||+.+++|+..+
T Consensus 417 ----~e~ydp~~~~W~~~~~---m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 417 ----AEFYCESSNTWTLIDD---PIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ----eEEecCCCCcEeEcCC---CCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 5789999999999874 4789999999988 677999999876666788999999999998764
No 29
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.94 E-value=2e-27 Score=196.76 Aligned_cols=87 Identities=38% Similarity=0.674 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHhcccCCCCcccccccCCCChHHHHHHhhhheeeeeCCCCCCCCCCCCHhhhHHHHHHhcCCCCCHHHHH
Q 006645 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (637)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (637)
|+++|..|+++|+.... ...++++++|+|||||||||+|||+.++|++||+++++||+||++++|||++|||
T Consensus 1 Le~~F~~A~~~v~~~~~--------~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~ 72 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPK--------KSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAM 72 (87)
T ss_dssp HHHHHHHHHHHHHHSSS--------CSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHH
T ss_pred CHHHHHHHHHHHHhccc--------cCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHH
Confidence 68999999999973221 1489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 006645 92 RLFVKILEEEDPGWY 106 (637)
Q Consensus 92 ~~yv~~~~~~~~~~~ 106 (637)
++||++|++++|.|.
T Consensus 73 ~~Yi~~v~~~~~~~~ 87 (87)
T PF00887_consen 73 REYIELVEELIPKYE 87 (87)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999874
No 30
>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=204.27 Aligned_cols=93 Identities=40% Similarity=0.660 Sum_probs=87.5
Q ss_pred CCcHHHHHHHHHHhcccCCCCcccccccCCCChHHHHHHhhhheeeeeCCCCCCCCCCCCHhhhHHHHHHhcCCCCCHHH
Q 006645 10 LAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTE 89 (637)
Q Consensus 10 ~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~ 89 (637)
..+.+.|++|++.++ .+...|+++++|+|||||||||+|||++++||+||+++|+||+||++++|||++|
T Consensus 3 ~~~~~~Fe~a~~~~~----------~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~e 72 (142)
T KOG0817|consen 3 ATLEAKFEAAAEAVK----------NLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEE 72 (142)
T ss_pred chHHHHHHHHHHHHH----------hcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH
Confidence 356889999999995 5667799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccCccC
Q 006645 90 AMRLFVKILEEEDPGWYSRASNS 112 (637)
Q Consensus 90 a~~~yv~~~~~~~~~~~~~~~~~ 112 (637)
||+.||+++++++|.|...+...
T Consensus 73 A~~~Yv~~~~~l~~~~~~~~~~~ 95 (142)
T KOG0817|consen 73 AMEAYVEKVEELIPKYGAEAETE 95 (142)
T ss_pred HHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999988874
No 31
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.91 E-value=8.4e-25 Score=164.27 Aligned_cols=84 Identities=32% Similarity=0.527 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhcccCCCCcccccccCCCChHHHHHHhhhheeeeeCCCCCCCCCCCCHhhhHHHHHHhcCCCCCHHHHH
Q 006645 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (637)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (637)
+..+|+.|..-|+ .+...|++++.|+|||||||+++||.+..+||+||++|+.||+||..|+|.|.++|.
T Consensus 2 ~s~~Feqa~~dV~----------~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~ 71 (87)
T COG4281 2 LSTRFEQAQTDVK----------ELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDAR 71 (87)
T ss_pred hhhHHHHHHHHHH----------HhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHH
Confidence 4568999999995 567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 006645 92 RLFVKILEEEDPGW 105 (637)
Q Consensus 92 ~~yv~~~~~~~~~~ 105 (637)
++||.+|+++...+
T Consensus 72 qeYialVeeLkak~ 85 (87)
T COG4281 72 QEYIALVEELKAKY 85 (87)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999997664
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=3.7e-16 Score=155.04 Aligned_cols=237 Identities=21% Similarity=0.366 Sum_probs=173.6
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCC-----CcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCc
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN-----GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPC 246 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r 246 (637)
.|.++.. .+-.+|.+..+++++++||||||... ....+++|+||+.+++|.++.+.. |...
T Consensus 71 ~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s------------P~gl 136 (381)
T COG3055 71 GWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS------------PTGL 136 (381)
T ss_pred CceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc------------cccc
Confidence 8999886 46678999999999999999999632 356899999999999999998764 7789
Q ss_pred ccceEEEeCC-EEEEEEccCCC---------------------------------CCcceeEEEEECCCCceEeeccCCC
Q 006645 247 AGHSLIPWEN-KLLSIAGHTKD---------------------------------PSEIIQVKVFDLQTCSWSTLKTYGK 292 (637)
Q Consensus 247 ~~hs~v~~~~-~lyv~GG~~~~---------------------------------~~~~~~v~~yd~~t~~W~~~~~~g~ 292 (637)
.+++++.+++ +||++||.+.. ......+..|+|.++.|+..-. .
T Consensus 137 ~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~ 214 (381)
T COG3055 137 VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--N 214 (381)
T ss_pred ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--C
Confidence 9999999988 99999997632 1125578999999999998853 2
Q ss_pred CCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECC--CCceEEecCCCCCCCc-ccccEE--EEEcCCEEEEEeCC
Q 006645 293 PPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE--TMTWDEIDAVGVPPSP-RSDHAA--AVHAERYLLIFGGG 367 (637)
Q Consensus 293 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~--t~~W~~~~~~~~~p~~-r~~h~~--~~~~~~~l~v~GG~ 367 (637)
+-.++++.+.+.-++++.++-|.-..+-.+..++.+++. ..+|..++....++.. ..+-+. .-..++.++|.||.
T Consensus 215 pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGA 294 (381)
T COG3055 215 PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGA 294 (381)
T ss_pred cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCC
Confidence 456778765555678899999986665556777777765 5689998644211111 011111 11236778888883
Q ss_pred C---------------C----CCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEE
Q 006645 368 S---------------H----AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVI 428 (637)
Q Consensus 368 ~---------------~----~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l 428 (637)
+ + ....++||+|| .+.|+.+ +.+|.++.+-.++..++ .|
T Consensus 295 nF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn-----------------~v 352 (381)
T COG3055 295 NFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNN-----------------KV 352 (381)
T ss_pred CChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCC-----------------cE
Confidence 2 1 12346899998 8999987 58889888877777655 89
Q ss_pred EEEcCCC--CCCcccEEEEe
Q 006645 429 VAFGGYN--GRYNNEVHVLK 446 (637)
Q Consensus 429 ~v~GG~~--~~~~~~v~~~d 446 (637)
|++||.+ |.....|+.+-
T Consensus 353 l~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 353 LLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred EEEccccCCCeeeeeEEEEE
Confidence 9999975 34566666554
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.61 E-value=8.1e-16 Score=157.24 Aligned_cols=260 Identities=18% Similarity=0.254 Sum_probs=186.3
Q ss_pred ceEEecccCC-------CCCCCCcceeEEEECC--EEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCC
Q 006645 171 DQWIAPPISG-------QRPKARYEHGAAVVQD--KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPA 241 (637)
Q Consensus 171 ~~W~~~~~~g-------~~p~~R~~~a~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 241 (637)
-.|.+++... ..|..|.+|-++...+ .||++||+++-..+.|+|.|+...+.|+.+..-+ .
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t----------~ 308 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT----------E 308 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC----------C
Confidence 4899877654 6788999999998865 8999999999999999999999999999886532 4
Q ss_pred CCCCcccceEEEeCC--EEEEEEccCCCC-----CcceeEEEEECCCCceEeeccC---CCCCCCCCceEEEEECCE--E
Q 006645 242 LLTPCAGHSLIPWEN--KLLSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTY---GKPPVSRGGQSVTLVGTS--L 309 (637)
Q Consensus 242 ~p~~r~~hs~v~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~--l 309 (637)
.|..|..|.+|..-. +||+.|-+-+.+ ...+++|.||.+++.|..++-. ..-|.....|.+++.+++ |
T Consensus 309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~i 388 (723)
T KOG2437|consen 309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMI 388 (723)
T ss_pred CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceE
Confidence 589999999998866 999999876552 2356899999999999999632 135788999999999887 9
Q ss_pred EEEeCCCC--CCCCCCceEEEECCCCceEEecCCC-------CCCCcccccEEEEEc-CCEEEEEeCCCCCCCcCcEEEE
Q 006645 310 VIFGGEDA--KRSLLNDLHILDLETMTWDEIDAVG-------VPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVL 379 (637)
Q Consensus 310 yv~GG~~~--~~~~~n~i~~yd~~t~~W~~~~~~~-------~~p~~r~~h~~~~~~-~~~l~v~GG~~~~~~~~dl~~~ 379 (637)
|||||..- +......+|.||+....|..+...- .-...|.+|++-... ++.+|+|||.+....++-.+.|
T Consensus 389 yVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y 468 (723)
T KOG2437|consen 389 YVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSY 468 (723)
T ss_pred EEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcc
Confidence 99999742 2123567999999999998764211 113457888876653 5689999998776666666777
Q ss_pred ECCCCeeEeccc-----CCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC-------CCCcccEEEEeC
Q 006645 380 DLQTMEWSRPTQ-----QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-------GRYNNEVHVLKP 447 (637)
Q Consensus 380 d~~t~~W~~l~~-----~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~-------~~~~~~v~~~d~ 447 (637)
|+....=..+.. ....|++-+... +.++. ..+.|.+.-|+. +...+.+|+|++
T Consensus 469 ~I~~E~~~~~s~~~k~dsS~~pS~~f~qR-s~~dp--------------~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i 533 (723)
T KOG2437|consen 469 DIDSEHVDIISDGTKKDSSMVPSTGFTQR-ATIDP--------------ELNEIHVLSGLSKDKEKREENVRNSFWIYDI 533 (723)
T ss_pred eeccccchhhhccCcCccccCCCcchhhh-cccCC--------------CCcchhhhcccchhccCccccccCcEEEEEe
Confidence 765443322210 001111111111 11111 134677766653 235789999999
Q ss_pred CCCccccc
Q 006645 448 SHKSTLSS 455 (637)
Q Consensus 448 ~~~~~~~~ 455 (637)
.++.|...
T Consensus 534 ~~~~w~cI 541 (723)
T KOG2437|consen 534 VRNSWSCI 541 (723)
T ss_pred cccchhhH
Confidence 98877654
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.58 E-value=1.1e-13 Score=137.57 Aligned_cols=265 Identities=19% Similarity=0.288 Sum_probs=178.9
Q ss_pred CCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccC--CeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEE
Q 006645 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKL 258 (637)
Q Consensus 181 ~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~l 258 (637)
+.|.+--.-+.+.+++.+||-=|..+ ...|.+|+.. ..|.+++.-+ ..+|.+..++.++++|
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~Fp------------G~~rnqa~~a~~~~kL 95 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFP------------GGARNQAVAAVIGGKL 95 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCC------------CcccccchheeeCCeE
Confidence 35667666688899999999766333 3578888876 6899997753 6789999999999999
Q ss_pred EEEEccCCC----CCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECC-EEEEEeCCCC----------------
Q 006645 259 LSIAGHTKD----PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDA---------------- 317 (637)
Q Consensus 259 yv~GG~~~~----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~---------------- 317 (637)
|||||.... ....+++|+|||.+++|.++.+. .|....+++++.+++ +||++||.+.
T Consensus 96 yvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d 173 (381)
T COG3055 96 YVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKD 173 (381)
T ss_pred EEeeccccCCCCCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhccc
Confidence 999998765 23578999999999999999885 677788999999987 9999999641
Q ss_pred -----------------CCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCC-CCCCCcCcEEEE
Q 006645 318 -----------------KRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG-SHAACFNDLHVL 379 (637)
Q Consensus 318 -----------------~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~-~~~~~~~dl~~~ 379 (637)
...+...+..|+|.+++|+.+... +-.++++ +++++.++.+.++-|. ...-....++.+
T Consensus 174 ~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~ 250 (381)
T COG3055 174 KEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQA 250 (381)
T ss_pred HHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC--cccCccC-cceeecCCeEEEEcceecCCccccceeEE
Confidence 112356799999999999988533 3456666 5556667767777664 333445567777
Q ss_pred ECC--CCeeEecccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC-----------------C---C
Q 006645 380 DLQ--TMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-----------------G---R 437 (637)
Q Consensus 380 d~~--t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~-----------------~---~ 437 (637)
++. .-+|..+. ++|.+.....--+.+. + ..-. .+.+++.||-+ | .
T Consensus 251 ~~~~~~~~w~~l~---~lp~~~~~~~eGvAGa-----f---~G~s--~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~ 317 (381)
T COG3055 251 DFGGDNLKWLKLS---DLPAPIGSNKEGVAGA-----F---SGKS--NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKS 317 (381)
T ss_pred EeccCceeeeecc---CCCCCCCCCcccccee-----c---ccee--CCeEEEecCCCChhHHHHHHhcccccccchhhh
Confidence 765 56799885 3333322211111111 0 0011 33788888843 1 2
Q ss_pred CcccEEEEeCCCCcccccccCCCCCCCCccccccCCCCCcccchhh
Q 006645 438 YNNEVHVLKPSHKSTLSSKMIETPVPDSVSAVQNNTNPTRDLESEL 483 (637)
Q Consensus 438 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 483 (637)
..++||+|| ...|-....+|..+...- .-+.++-+..+++|.
T Consensus 318 w~~~Vy~~d-~g~Wk~~GeLp~~l~YG~---s~~~nn~vl~IGGE~ 359 (381)
T COG3055 318 WNSEVYIFD-NGSWKIVGELPQGLAYGV---SLSYNNKVLLIGGET 359 (381)
T ss_pred hhceEEEEc-CCceeeecccCCCccceE---EEecCCcEEEEcccc
Confidence 478999999 333444555665332221 223444555566654
No 35
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.45 E-value=1e-13 Score=142.10 Aligned_cols=211 Identities=19% Similarity=0.278 Sum_probs=156.6
Q ss_pred cCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC--EEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCC
Q 006645 219 RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN--KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVS 296 (637)
Q Consensus 219 ~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~--~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 296 (637)
-+..|.++....... ..-...|..|.||-+|...+ .||++||.++. ..+.+.|.|+...+.|+.+...+..|..
T Consensus 237 y~~~W~~i~~~~~~~---~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~ 312 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKG---DGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGA 312 (723)
T ss_pred ccccccccCchhhcc---cccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcc
Confidence 456898876543111 01124578999999999865 99999999887 6788999999999999999887778999
Q ss_pred CCceEEEEECC--EEEEEeCCCCCC-----CCCCceEEEECCCCceEEecCCC---CCCCcccccEEEEEcC-CEEEEEe
Q 006645 297 RGGQSVTLVGT--SLVIFGGEDAKR-----SLLNDLHILDLETMTWDEIDAVG---VPPSPRSDHAAAVHAE-RYLLIFG 365 (637)
Q Consensus 297 r~~~~~~~~~~--~lyv~GG~~~~~-----~~~n~i~~yd~~t~~W~~~~~~~---~~p~~r~~h~~~~~~~-~~l~v~G 365 (637)
|.+|.++.... +||+.|-+-+.. ....|+|+||.+++.|..++-.. --|...+.|.+++..+ +.|||||
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEec
Confidence 99999998755 899999863322 23578999999999999986432 2478899999999854 3599999
Q ss_pred CCCC---CCCcCcEEEEECCCCeeEecccC----C---CCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC
Q 006645 366 GGSH---AACFNDLHVLDLQTMEWSRPTQQ----G---EIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (637)
Q Consensus 366 G~~~---~~~~~dl~~~d~~t~~W~~l~~~----~---~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~ 435 (637)
|..- ...+..+|.||.....|..+... + ..-..|.+|.+-...+ ++.+|+|||..
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~---------------n~~ly~fggq~ 457 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSK---------------NRCLYVFGGQR 457 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCC---------------CCeEEeccCcc
Confidence 9652 24577899999999999876321 1 1123577777766654 56999999976
Q ss_pred CC-CcccEEEEeCC
Q 006645 436 GR-YNNEVHVLKPS 448 (637)
Q Consensus 436 ~~-~~~~v~~~d~~ 448 (637)
.+ -++-.+.|++.
T Consensus 458 s~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 458 SKTELNLFFSYDID 471 (723)
T ss_pred cceEEeehhcceec
Confidence 54 34444555543
No 36
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.3e-11 Score=118.43 Aligned_cols=94 Identities=23% Similarity=0.378 Sum_probs=84.7
Q ss_pred CCCCcHHHHHHHHHHhcccCCCCcccccccCCCChHHHHHHhhhheeeeeCCCCCC-CC--CCCCHhhhHHHHHHhcCCC
Q 006645 8 SGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVP-KP--SSWSPVEQSKWKSWQGLGN 84 (637)
Q Consensus 8 ~~~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~-~p--~~~~~~~~~k~~aw~~~~~ 84 (637)
-+++|+|.|..|+.|++.+.++ +.+++++++|+|-+|.||+.+||+|+. .| |++|++|+.+-.+|..|+.
T Consensus 28 wGf~LeElY~LA~~fyKe~~GK-------a~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~ 100 (469)
T KOG3878|consen 28 WGFPLEELYRLAFTFYKENSGK-------AIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGE 100 (469)
T ss_pred hCCCHHHHHHHHHHHHHhccCC-------ccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhc
Confidence 4789999999999999854443 679999999999999999999999965 34 7899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccc
Q 006645 85 MATTEAMRLFVKILEEEDPGWYSR 108 (637)
Q Consensus 85 ~s~~~a~~~yv~~~~~~~~~~~~~ 108 (637)
||+++||..||.+|++++|.|..-
T Consensus 101 ~sre~AM~~FV~Lldr~C~~F~~y 124 (469)
T KOG3878|consen 101 ISREQAMEGFVDLLDRMCSAFRPY 124 (469)
T ss_pred ccHHHHHHHHHHHHHhcchhhhhH
Confidence 999999999999999999998653
No 37
>PLN02772 guanylate kinase
Probab=99.09 E-value=6.4e-10 Score=115.47 Aligned_cols=90 Identities=21% Similarity=0.349 Sum_probs=80.4
Q ss_pred CCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCC
Q 006645 293 PPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC 372 (637)
Q Consensus 293 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~ 372 (637)
.+.++.+++++.+++++|||||.+..+..++.+++||..|.+|..+...|..|.||.+|++|++++++|+|+++.+...
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 4568999999999999999999887665689999999999999999999999999999999999999999999876543
Q ss_pred cCcEEEEECCCC
Q 006645 373 FNDLHVLDLQTM 384 (637)
Q Consensus 373 ~~dl~~~d~~t~ 384 (637)
.++|.+.+.|-
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 67899988764
No 38
>PF13964 Kelch_6: Kelch motif
Probab=99.03 E-value=5.3e-10 Score=82.34 Aligned_cols=45 Identities=36% Similarity=0.766 Sum_probs=41.7
Q ss_pred CCcceeEEEECCEEEEEcccCC-CcccCcEEEEEccCCeEEEeeec
Q 006645 185 ARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAK 229 (637)
Q Consensus 185 ~R~~~a~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~ 229 (637)
||.+|++++++++|||+||..+ ...++++++||+.|++|+.++++
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC
Confidence 6999999999999999999877 78899999999999999999654
No 39
>PF13964 Kelch_6: Kelch motif
Probab=99.02 E-value=5.9e-10 Score=82.09 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=45.5
Q ss_pred CcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCC
Q 006645 245 PCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSR 297 (637)
Q Consensus 245 ~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 297 (637)
+|.+|+++.++++|||+||.......++++++||+.+++|+.+++ +|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 588999999999999999998866789999999999999999976 78776
No 40
>PLN02772 guanylate kinase
Probab=98.98 E-value=3.3e-09 Score=110.21 Aligned_cols=89 Identities=18% Similarity=0.308 Sum_probs=78.5
Q ss_pred CCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEE-CCEEEEEeCCCCCCC
Q 006645 242 LLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRS 320 (637)
Q Consensus 242 ~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~ 320 (637)
...++.+|+++.+++++|||||.......++.+++||+.|++|..+...|..|.+|.+|+++++ +++|+|+++.....
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 3568999999999999999999877655789999999999999999999999999999999999 56999999865543
Q ss_pred CCCceEEEECCCC
Q 006645 321 LLNDLHILDLETM 333 (637)
Q Consensus 321 ~~n~i~~yd~~t~ 333 (637)
.++|.+.++|-
T Consensus 100 --~~~w~l~~~t~ 110 (398)
T PLN02772 100 --DSIWFLEVDTP 110 (398)
T ss_pred --cceEEEEcCCH
Confidence 68999988764
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.86 E-value=5.1e-09 Score=76.66 Aligned_cols=48 Identities=48% Similarity=0.823 Sum_probs=42.2
Q ss_pred CCEEEEEeCCC-CCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEE
Q 006645 306 GTSLVIFGGED-AKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH 356 (637)
Q Consensus 306 ~~~lyv~GG~~-~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~ 356 (637)
+++||||||.+ .....+|++|+||+.+.+|+.+ ++.|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 4556789999999999999999 457999999999874
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.82 E-value=9.2e-09 Score=75.29 Aligned_cols=47 Identities=40% Similarity=0.809 Sum_probs=42.2
Q ss_pred CCEEEEEeCCC--CCCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEE
Q 006645 358 ERYLLIFGGGS--HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (637)
Q Consensus 358 ~~~l~v~GG~~--~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~ 407 (637)
+++||||||.+ ....++++|+||+.+.+|+++ +.+|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 46899999988 678899999999999999998 588999999999864
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.81 E-value=8.5e-09 Score=74.78 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=41.6
Q ss_pred CCcceeEEEECCEEEEEcccCC-CcccCcEEEEEccCCeEEEeeec
Q 006645 185 ARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAK 229 (637)
Q Consensus 185 ~R~~~a~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~ 229 (637)
||.+|++++++++|||+||..+ ...++++++||+.+++|..++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6999999999999999999877 78899999999999999999876
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.80 E-value=1.1e-08 Score=74.95 Aligned_cols=45 Identities=29% Similarity=0.714 Sum_probs=41.2
Q ss_pred CCcceeEEEECCEEEEEccc---CCCcccCcEEEEEccCCeEEEeeec
Q 006645 185 ARYEHGAAVVQDKMYIYGGN---HNGRYLSDMHILDLRSWAWSKIQAK 229 (637)
Q Consensus 185 ~R~~~a~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~ 229 (637)
||++|++++++++||||||+ ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999998 5678899999999999999998664
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.78 E-value=1.4e-08 Score=73.62 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=41.7
Q ss_pred CcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 245 PCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 245 ~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
+|.+|+++.++++|||+||.......++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 589999999999999999999867899999999999999999976
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.72 E-value=3.2e-08 Score=72.41 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=40.9
Q ss_pred CCCceEEEEECCEEEEEeCC--CCCCCCCCceEEEECCCCceEEecCC
Q 006645 296 SRGGQSVTLVGTSLVIFGGE--DAKRSLLNDLHILDLETMTWDEIDAV 341 (637)
Q Consensus 296 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~n~i~~yd~~t~~W~~~~~~ 341 (637)
||.+|++++++++||||||+ .....+.+++++||+.+.+|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58999999999999999999 44556789999999999999999754
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.63 E-value=3.1e-08 Score=72.55 Aligned_cols=44 Identities=32% Similarity=0.678 Sum_probs=29.9
Q ss_pred cccccEEEEEcCCEEEEEeCCCCC-CCcCcEEEEECCCCeeEecc
Q 006645 347 PRSDHAAAVHAERYLLIFGGGSHA-ACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 347 ~r~~h~~~~~~~~~l~v~GG~~~~-~~~~dl~~~d~~t~~W~~l~ 390 (637)
||.+|+++.+.++.||||||.+.. ..++++|+||+.+++|++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 699999999977899999998875 68999999999999999984
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.63 E-value=3.5e-08 Score=72.22 Aligned_cols=45 Identities=27% Similarity=0.574 Sum_probs=31.4
Q ss_pred CcccceEEEe-CCEEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 245 PCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 245 ~r~~hs~v~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
+|.+|+++.+ +++||||||.+.....++++++||+.+++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 6899999999 58999999998876789999999999999999944
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.63 E-value=7e-08 Score=67.96 Aligned_cols=40 Identities=45% Similarity=0.855 Sum_probs=36.2
Q ss_pred CCCCCcceeEEEECCEEEEEcccC--CCcccCcEEEEEccCC
Q 006645 182 RPKARYEHGAAVVQDKMYIYGGNH--NGRYLSDMHILDLRSW 221 (637)
Q Consensus 182 ~p~~R~~~a~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~ 221 (637)
+|.+|.+|++++++++||||||.. ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999987 4788999999999874
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.51 E-value=2.4e-07 Score=65.20 Aligned_cols=41 Identities=41% Similarity=0.671 Sum_probs=36.4
Q ss_pred CCCCCCceEEEEECCEEEEEeCCCC-CCCCCCceEEEECCCC
Q 006645 293 PPVSRGGQSVTLVGTSLVIFGGEDA-KRSLLNDLHILDLETM 333 (637)
Q Consensus 293 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~n~i~~yd~~t~ 333 (637)
+|.+|.+|++++++++||||||.+. ...++|++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999984 6667999999998763
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.41 E-value=1.6e-05 Score=77.53 Aligned_cols=165 Identities=18% Similarity=0.237 Sum_probs=100.9
Q ss_pred EEEEEEccCCCCCcceeEEEEECCCCc--------eEeeccCCCCCCCCCceEEEEEC----CEEEEEeCCCC-------
Q 006645 257 KLLSIAGHTKDPSEIIQVKVFDLQTCS--------WSTLKTYGKPPVSRGGQSVTLVG----TSLVIFGGEDA------- 317 (637)
Q Consensus 257 ~lyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~~~----~~lyv~GG~~~------- 317 (637)
..++.||.+.+....+.+|+....+.. .....-.|+.|.+|++|++.++. ...++|||..-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 456779998887778888888776543 23334458899999999998872 25889999631
Q ss_pred ------CCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCC--CcCcEEEEECCCCeeEec
Q 006645 318 ------KRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA--CFNDLHVLDLQTMEWSRP 389 (637)
Q Consensus 318 ------~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~--~~~dl~~~d~~t~~W~~l 389 (637)
--.....|+.+|++....+.-... ..-...++|.+.. .++.+||+||.+-.. ....++++. +
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlk--------V 189 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLK--------V 189 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEE--------E
Confidence 011234578888887777654321 2234556666555 478899999975332 222344432 1
Q ss_pred ccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC
Q 006645 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR 437 (637)
Q Consensus 390 ~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~ 437 (637)
+++.+.-..+|.++++.+-|-..++. .-+.+..+|+|||..+
T Consensus 190 ----dLllGSP~vsC~vl~~glSisSAIvt--~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 190 ----DLLLGSPAVSCTVLQGGLSISSAIVT--QTGPHEYIILGGYQSD 231 (337)
T ss_pred ----eecCCCceeEEEECCCCceEeeeeEe--ecCCCceEEEeccccc
Confidence 34444445566666663322111111 1223589999998643
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.41 E-value=1.7e-05 Score=78.05 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=95.5
Q ss_pred EEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCC----CceEeec
Q 006645 213 MHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT----CSWSTLK 288 (637)
Q Consensus 213 v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~ 288 (637)
-..||+.|++++.+.... -.-|++|+.. -+|++++.||.... ...+..|++.+ ..|....
T Consensus 48 s~~yD~~tn~~rpl~v~t------------d~FCSgg~~L-~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~ 111 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT------------DTFCSGGAFL-PDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP 111 (243)
T ss_pred EEEEecCCCcEEeccCCC------------CCcccCcCCC-CCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc
Confidence 467999999999886542 3556666433 47899999998653 34677888865 6798876
Q ss_pred cCCCCCCCCCceEEEEE-CCEEEEEeCCCCCCCCCCceEEEECC------CCceEEecCCC-CCCCcccccEEEEEcCCE
Q 006645 289 TYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE------TMTWDEIDAVG-VPPSPRSDHAAAVHAERY 360 (637)
Q Consensus 289 ~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~n~i~~yd~~------t~~W~~~~~~~-~~p~~r~~h~~~~~~~~~ 360 (637)
.. |-.+|.+.+++.+ +++++|+||.... .+.|-+. ...|..+.... ..+..-+-+ +.+..++.
T Consensus 112 ~~--m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~llPdG~ 182 (243)
T PF07250_consen 112 ND--MQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLLPDGN 182 (243)
T ss_pred cc--ccCCCccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCce-EEEcCCCC
Confidence 43 7889999999888 6799999998621 2223232 11232222111 112222222 33445778
Q ss_pred EEEEeCCCCCCCcCcEEEEECCCCee-Eeccc
Q 006645 361 LLIFGGGSHAACFNDLHVLDLQTMEW-SRPTQ 391 (637)
Q Consensus 361 l~v~GG~~~~~~~~dl~~~d~~t~~W-~~l~~ 391 (637)
||||+.. +-.+||..++++ +.++.
T Consensus 183 lFi~an~-------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 183 LFIFANR-------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred EEEEEcC-------CcEEEeCCCCeEEeeCCC
Confidence 9999874 457899999987 56653
No 53
>smart00612 Kelch Kelch domain.
Probab=98.31 E-value=8e-07 Score=64.04 Aligned_cols=47 Identities=26% Similarity=0.587 Sum_probs=40.4
Q ss_pred EEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC
Q 006645 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN 256 (637)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~ 256 (637)
+|||+||..+...++++++||+.+++|+.+++ ++.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-------------~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPS-------------MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCC-------------CCCccccceEEEeCC
Confidence 48999998776778999999999999998754 578999999988764
No 54
>smart00612 Kelch Kelch domain.
Probab=98.28 E-value=1.4e-06 Score=62.77 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEEC
Q 006645 360 YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (637)
Q Consensus 360 ~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~ 408 (637)
+|||+||.+....++++++||+.+++|+.++ .++.+|..|++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeC
Confidence 3899999877667899999999999999876 788999999998875
No 55
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.08 E-value=4.3e-05 Score=74.52 Aligned_cols=110 Identities=24% Similarity=0.379 Sum_probs=82.5
Q ss_pred EEEEEeCCCCCCCCCCceEEEECCCCc--------eEEecCCCCCCCcccccEEEEEc---CCEEEEEeCCCC-------
Q 006645 308 SLVIFGGEDAKRSLLNDLHILDLETMT--------WDEIDAVGVPPSPRSDHAAAVHA---ERYLLIFGGGSH------- 369 (637)
Q Consensus 308 ~lyv~GG~~~~~~~~n~i~~yd~~t~~--------W~~~~~~~~~p~~r~~h~~~~~~---~~~l~v~GG~~~------- 369 (637)
..+|.||.+.++..++.+|++.+.+.. ..+....|+.|.+|++|++.++. ....++|||.+-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 567889999999889999999876543 34445568899999999998873 346899999641
Q ss_pred -------CCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCC
Q 006645 370 -------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (637)
Q Consensus 370 -------~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~ 435 (637)
-++...|+.+|+.-+.++.-. .+.+..+...|.+..-+| .+|++||+.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D-----------------~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARND-----------------CVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCc-----------------eEEEEccEE
Confidence 134456899999988887643 246667777887777644 899999974
No 56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.79 E-value=0.0083 Score=59.42 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=91.5
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEe----CC-EEEEEEccCCCCCcceeEEEEECCCCceE
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW----EN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWS 285 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~----~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 285 (637)
..++++||.|++|..++... .+.....+. +....+ +. +|..+...... .....+++|++.++.|+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~--------~~~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr 83 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPK--------SRRSNKESD-TYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWR 83 (230)
T ss_pred CcEEEECCCCCCEEecCCCC--------Ccccccccc-eEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCcc
Confidence 47899999999999985421 000001111 111112 22 56555543211 23457899999999999
Q ss_pred eeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEE-ecCCCCCCCccc----ccEEEEEcCCE
Q 006645 286 TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAVGVPPSPRS----DHAAAVHAERY 360 (637)
Q Consensus 286 ~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~-~~~~~~~p~~r~----~h~~~~~~~~~ 360 (637)
.+... ++........+.++|.||-+....... ....|..||+.+.+|.. ++. |..+. ....+.+ +++
T Consensus 84 ~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~-~G~ 155 (230)
T TIGR01640 84 TIECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINY-KGK 155 (230)
T ss_pred ccccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeec----CccccccccceEEEEE-CCE
Confidence 98642 222122223677899988887543211 11269999999999995 542 22221 2234444 466
Q ss_pred EEEEeCCCCCCCcCcEEEEE-CCCCeeEecc
Q 006645 361 LLIFGGGSHAACFNDLHVLD-LQTMEWSRPT 390 (637)
Q Consensus 361 l~v~GG~~~~~~~~dl~~~d-~~t~~W~~l~ 390 (637)
|.++...... ..-+||+++ -....|++.-
T Consensus 156 L~~v~~~~~~-~~~~IWvl~d~~~~~W~k~~ 185 (230)
T TIGR01640 156 LAVLKQKKDT-NNFDLWVLNDAGKQEWSKLF 185 (230)
T ss_pred EEEEEecCCC-CcEEEEEECCCCCCceeEEE
Confidence 7776553221 124788886 4456799753
No 57
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.61 E-value=0.0022 Score=63.33 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=64.3
Q ss_pred EEEEECCCCceEeeccCCCCCCCCCceE-EEEECCEEEEEeCCCCCCCCCCceEEEECCC----CceEEecCCCCCCCcc
Q 006645 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQS-VTLVGTSLVIFGGEDAKRSLLNDLHILDLET----MTWDEIDAVGVPPSPR 348 (637)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t----~~W~~~~~~~~~p~~r 348 (637)
-..||+.+++++.+... .-..+.+ +..-+++++++||.... ...+-.|++.+ ..|.+.... +-.+|
T Consensus 48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 45799999999988652 2222222 23347899999998552 35688888865 679887633 67899
Q ss_pred cccEEEEEcCCEEEEEeCCC
Q 006645 349 SDHAAAVHAERYLLIFGGGS 368 (637)
Q Consensus 349 ~~h~~~~~~~~~l~v~GG~~ 368 (637)
+..+++.+.++.++|+||..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccccceECCCCCEEEEeCcC
Confidence 99999999999999999976
No 58
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.50 E-value=0.011 Score=58.58 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=91.9
Q ss_pred ccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEe-e
Q 006645 209 YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-L 287 (637)
Q Consensus 209 ~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~ 287 (637)
....+++|++.++.|+.+.... +........+.++|.||-+...... .....|..||+.+.+|.. +
T Consensus 68 ~~~~~~Vys~~~~~Wr~~~~~~------------~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i 134 (230)
T TIGR01640 68 NQSEHQVYTLGSNSWRTIECSP------------PHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFI 134 (230)
T ss_pred CCccEEEEEeCCCCccccccCC------------CCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeee
Confidence 3457899999999999986321 1111122267889999988754322 122379999999999995 5
Q ss_pred ccCCCCCCCC----CceEEEEECCEEEEEeCCCCCCCCCCceEEEE-CCCCceEEecCCCCCCCcccc---cEEEEEcCC
Q 006645 288 KTYGKPPVSR----GGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD-LETMTWDEIDAVGVPPSPRSD---HAAAVHAER 359 (637)
Q Consensus 288 ~~~g~~p~~r----~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd-~~t~~W~~~~~~~~~p~~r~~---h~~~~~~~~ 359 (637)
+. |..+ .....+.++|+|.++....... .-+||+++ -....|++.-....++.+... +...+..++
T Consensus 135 ~~----P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g 208 (230)
T TIGR01640 135 PL----PCGNSDSVDYLSLINYKGKLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKG 208 (230)
T ss_pred ec----CccccccccceEEEEECCEEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCC
Confidence 43 3222 2345666789988877643211 24677775 446679876444222222221 234444567
Q ss_pred EEEEEeCCCCCCCcCcEEEEECCCC
Q 006645 360 YLLIFGGGSHAACFNDLHVLDLQTM 384 (637)
Q Consensus 360 ~l~v~GG~~~~~~~~dl~~~d~~t~ 384 (637)
.|++..+.. ...-+..||+.++
T Consensus 209 ~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 209 EIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEeCCC---CceEEEEEeccCC
Confidence 777766531 0113889998764
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.10 E-value=0.0073 Score=68.75 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=41.1
Q ss_pred hHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 006645 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQ 569 (637)
Q Consensus 513 e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q 569 (637)
...++.++.+.++||..+.+..+..++.++.++.+|+++.+..++.++.+.||++++
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777888888887777777777777777777777777777777776554
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.75 E-value=0.05 Score=49.32 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=45.7
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------HhhhhhhHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAE----------QSRCFKLEVDVAELRQK 585 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~----------q~~~~~le~~~~el~~~ 585 (637)
...++...+.++....++++++..|+.++..++.++..++.++......+.+. .+|+..||+++.+...+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777777777777776666655433 33444555555444444
Q ss_pred HHh
Q 006645 586 LQT 588 (637)
Q Consensus 586 lq~ 588 (637)
|..
T Consensus 96 L~e 98 (143)
T PF12718_consen 96 LKE 98 (143)
T ss_pred HHH
Confidence 443
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.58 E-value=0.86 Score=44.77 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=89.5
Q ss_pred EEEECCEEEEEcccCCCcccCcEEEEEccCCe--EEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCC
Q 006645 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (637)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~ 268 (637)
.+..++.+|+..+ ...+++||..|++ |+.-. ........+..++.||+..+.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~----------------~~~~~~~~~~~~~~v~v~~~~---- 85 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL----------------PGPISGAPVVDGGRVYVGTSD---- 85 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC----------------SSCGGSGEEEETTEEEEEETT----
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec----------------cccccceeeecccccccccce----
Confidence 3447899999843 3679999998875 65542 122222246778899888732
Q ss_pred CcceeEEEEECCCCc--eEe-eccCCCCCC-CCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCc--eEEecCCC
Q 006645 269 SEIIQVKVFDLQTCS--WST-LKTYGKPPV-SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVG 342 (637)
Q Consensus 269 ~~~~~v~~yd~~t~~--W~~-~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~--W~~~~~~~ 342 (637)
+.+++||..++. |.. .... .+. ........+.++.+|+... ...++.+|+.+.+ |......+
T Consensus 86 ---~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 86 ---GSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp ---SEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT
T ss_pred ---eeeEecccCCcceeeeeccccc--cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCC
Confidence 279999987765 884 4331 122 2233334444677776653 3569999998764 77654221
Q ss_pred CCCCc--c--cccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe--eEe
Q 006645 343 VPPSP--R--SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSR 388 (637)
Q Consensus 343 ~~p~~--r--~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~--W~~ 388 (637)
....+ . ...+..++.++.+|++.+.. .+..+|..++. |+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEE
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEe
Confidence 10000 0 01133344456788876643 25667999887 844
No 62
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.55 E-value=0.055 Score=55.22 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 589 METLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
+++++++++++-++.++.++++++.+
T Consensus 233 i~qrd~~i~q~~q~iaar~e~I~~re 258 (499)
T COG4372 233 IQQRDAQISQKAQQIAARAEQIRERE 258 (499)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444444444444433
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.51 E-value=0.057 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006645 589 METLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~ 610 (637)
.+.+.+.++.+.+++...+..|
T Consensus 75 ~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3344455555554444444444
No 64
>PRK11637 AmiB activator; Provisional
Probab=96.48 E-value=0.038 Score=60.15 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=16.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 524 ~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
++++.++.+.++++..++.++.+.+.++..+++++...+.++
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444433333334444444443333
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.39 E-value=0.087 Score=57.48 Aligned_cols=63 Identities=35% Similarity=0.418 Sum_probs=31.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq 587 (637)
.++..+...+.+..+|+++.+++....+.+.++...+..++.+...|..+|++.+..+.++..
T Consensus 175 ~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 175 RLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444445445545555555566666666665555553
No 66
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.36 E-value=0.5 Score=49.79 Aligned_cols=121 Identities=18% Similarity=0.272 Sum_probs=74.6
Q ss_pred EEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCc
Q 006645 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSE 270 (637)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~ 270 (637)
+++.+++|+.+++. ..+.+||..|..-...+ .++.+...-.++.++++||++.........
T Consensus 72 ~al~gskIv~~d~~------~~t~vyDt~t~av~~~P-------------~l~~pk~~pisv~VG~~LY~m~~~~~~~~~ 132 (342)
T PF07893_consen 72 FALHGSKIVAVDQS------GRTLVYDTDTRAVATGP-------------RLHSPKRCPISVSVGDKLYAMDRSPFPEPA 132 (342)
T ss_pred EEecCCeEEEEcCC------CCeEEEECCCCeEeccC-------------CCCCCCcceEEEEeCCeEEEeeccCccccc
Confidence 33359999999763 34889999998776443 334444445778889999999887544111
Q ss_pred ------ceeEEEEEC--------CCCceEeeccCCCCCCCCCc-------eEEEEE-CCEEEE-EeCCCCCCCCCCceEE
Q 006645 271 ------IIQVKVFDL--------QTCSWSTLKTYGKPPVSRGG-------QSVTLV-GTSLVI-FGGEDAKRSLLNDLHI 327 (637)
Q Consensus 271 ------~~~v~~yd~--------~t~~W~~~~~~g~~p~~r~~-------~~~~~~-~~~lyv-~GG~~~~~~~~n~i~~ 327 (637)
.-.+..|++ ..-.|..+++ +|..+.. .+.+++ +..|+| .-|.. ...|.
T Consensus 133 ~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTys 203 (342)
T PF07893_consen 133 GRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYS 203 (342)
T ss_pred cCccceeEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEE
Confidence 223344442 2335777654 3332221 233444 557777 33321 23899
Q ss_pred EECCCCceEEec
Q 006645 328 LDLETMTWDEID 339 (637)
Q Consensus 328 yd~~t~~W~~~~ 339 (637)
||+.+.+|+...
T Consensus 204 fDt~~~~W~~~G 215 (342)
T PF07893_consen 204 FDTESHEWRKHG 215 (342)
T ss_pred EEcCCcceeecc
Confidence 999999999984
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.34 E-value=0.21 Score=50.76 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=76.6
Q ss_pred EEcccC---CCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEe-CCEEEEEEccCCCCCcceeEE
Q 006645 200 IYGGNH---NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVK 275 (637)
Q Consensus 200 v~GG~~---~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~-~~~lyv~GG~~~~~~~~~~v~ 275 (637)
++||.. +.-....++.||+.+.+|..+... ..+.. +++... ++.||+.|-..........+-
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~-------------i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la 67 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG-------------ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLA 67 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC-------------ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEE
Confidence 456632 222467899999999999987431 11211 222223 678888887666544567799
Q ss_pred EEECCCCceEeeccC--CCCCCCCCceEEEEEC-CEEEEEeCCCCCCCCCCceEEEECCCCceEEecC
Q 006645 276 VFDLQTCSWSTLKTY--GKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (637)
Q Consensus 276 ~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~ 340 (637)
.||..+.+|..+... ...|.+....+....+ +.+++.|.. ..+ ..-+..| +..+|..+..
T Consensus 68 ~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 68 TYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEE--cCCceEeccc
Confidence 999999999988662 2455554333222223 367777765 322 3445666 6779999864
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.32 E-value=0.051 Score=62.01 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=59.9
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHH
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQ 593 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~ 593 (637)
+.+..|+.+.+.|+.+++..++.-+.|..+|.........+..+|+..+.+..+-|.++..| +...|+..|.++.+|
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L---~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL---VQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44556776777777777766666666666666555544455555555555444334333333 223344445577888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006645 594 KELELLQRQKAASEQAALNA 613 (637)
Q Consensus 594 ~e~~~~~~~~~~~~~~~~~~ 613 (637)
|++.+.+++++.+|.||.+-
T Consensus 495 krL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888443
No 69
>PRK11637 AmiB activator; Provisional
Probab=96.29 E-value=0.053 Score=59.02 Aligned_cols=60 Identities=8% Similarity=0.159 Sum_probs=27.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006645 526 LESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQK 585 (637)
Q Consensus 526 le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~ 585 (637)
+++++.+.+++++++++++.+.+.++.++++++..++.++...+.++..+++++.+++++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~e 104 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ 104 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444333
No 70
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.15 E-value=1.8 Score=46.45 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=86.4
Q ss_pred cceeEEEECCEEEEEcccCCCcccCcEEEEEccCC--eEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEcc
Q 006645 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGH 264 (637)
Q Consensus 187 ~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~ 264 (637)
...+.++.+++||+.+. ...++.+|..|+ .|+.-... . ...+-+..++.+|+..+
T Consensus 112 ~~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~--------------~--~~ssP~v~~~~v~v~~~- 168 (394)
T PRK11138 112 LSGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG--------------E--ALSRPVVSDGLVLVHTS- 168 (394)
T ss_pred cccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC--------------c--eecCCEEECCEEEEECC-
Confidence 33445677889987543 246899999885 58754211 0 11222445788887433
Q ss_pred CCCCCcceeEEEEECCCCc--eEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCC--ceEEecC
Q 006645 265 TKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDA 340 (637)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~--~W~~~~~ 340 (637)
...++.||+.+++ |+..... .....+...+-++.++.+|+..+ ...++.+|+.+. .|+....
T Consensus 169 ------~g~l~ald~~tG~~~W~~~~~~-~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~ 234 (394)
T PRK11138 169 ------NGMLQALNESDGAVKWTVNLDV-PSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRIS 234 (394)
T ss_pred ------CCEEEEEEccCCCEeeeecCCC-CcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccc
Confidence 2368999998876 8775321 01111222233445666666432 245888888875 4864321
Q ss_pred C--CCCCCccc--ccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe--eEe
Q 006645 341 V--GVPPSPRS--DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSR 388 (637)
Q Consensus 341 ~--~~~p~~r~--~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~--W~~ 388 (637)
. +.....|. ..+.-++.++.+|+.+.. ..++.+|+.++. |+.
T Consensus 235 ~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred cCCCccchhcccccCCCcEEECCEEEEEEcC------CeEEEEECCCCCEEEee
Confidence 1 00000010 112222346777776532 358999998764 875
No 71
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.09 E-value=0.067 Score=54.31 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=74.6
Q ss_pred EEEEccCCCCC-cceeEEEEECCCCceEeeccCCCCCCCCCceE--EEEE-CCEEEEEeCCCCCCCCCCceEEEECCCCc
Q 006645 259 LSIAGHTKDPS-EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQS--VTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (637)
Q Consensus 259 yv~GG~~~~~~-~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~--~~~~-~~~lyv~GG~~~~~~~~n~i~~yd~~t~~ 334 (637)
||-|-+...+. .+..+..||+.+.+|..+... ..+.. +... +++||+.|-....+.-...+-.||+.+.+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 44444443333 588899999999999998541 22221 2223 66788877655444235668999999999
Q ss_pred eEEecCC--CCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEeccc
Q 006645 335 WDEIDAV--GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (637)
Q Consensus 335 W~~~~~~--~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~ 391 (637)
|..+... ...|.|.............+++.|....+ ..-+..| +..+|..+..
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG--STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC--CceEEEE--cCCceEeccc
Confidence 9998752 23455543222222234467777765221 2234555 6778998853
No 72
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.08 E-value=2.1 Score=46.07 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=93.5
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCC--eEEEeeecccccCCCCCCCCCCCCcccc
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGH 249 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~h 249 (637)
.|+.....|. +......+.++.+++||+.+.. ..++.||..|+ .|+.-..... . . ....+..+...
T Consensus 47 ~W~~~~g~g~-~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~-~-~---~~~~~~~~~~~ 114 (394)
T PRK11138 47 VWSTSVGDGV-GDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKD-G-W---FSKNKSALLSG 114 (394)
T ss_pred eeEEEcCCCC-ccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcc-c-c---ccccccccccc
Confidence 6886543222 1111223456789999998752 36899999875 5875322100 0 0 00001122233
Q ss_pred eEEEeCCEEEEEEccCCCCCcceeEEEEECCCC--ceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEE
Q 006645 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (637)
Q Consensus 250 s~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~ 327 (637)
+.+..+++||+.+ . ...+++||..|+ .|+.... + + ...+-++.++.+|+..+ .+.++.
T Consensus 115 ~~~v~~~~v~v~~-~------~g~l~ald~~tG~~~W~~~~~-~----~-~~ssP~v~~~~v~v~~~-------~g~l~a 174 (394)
T PRK11138 115 GVTVAGGKVYIGS-E------KGQVYALNAEDGEVAWQTKVA-G----E-ALSRPVVSDGLVLVHTS-------NGMLQA 174 (394)
T ss_pred ccEEECCEEEEEc-C------CCEEEEEECCCCCCcccccCC-C----c-eecCCEEECCEEEEECC-------CCEEEE
Confidence 4556688888743 2 236899998876 4876532 1 1 11122445777777432 246999
Q ss_pred EECCCCc--eEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCC--eeEe
Q 006645 328 LDLETMT--WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (637)
Q Consensus 328 yd~~t~~--W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~--~W~~ 388 (637)
||+.+.+ |+..... .....+...+-++ .++.+|+ |..+ ..++.+|+.++ .|..
T Consensus 175 ld~~tG~~~W~~~~~~-~~~~~~~~~sP~v-~~~~v~~-~~~~-----g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 175 LNESDGAVKWTVNLDV-PSLTLRGESAPAT-AFGGAIV-GGDN-----GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred EEccCCCEeeeecCCC-CcccccCCCCCEE-ECCEEEE-EcCC-----CEEEEEEccCChhhhee
Confidence 9998765 8765321 0011121122233 3554555 3322 35788888765 4764
No 73
>PRK09039 hypothetical protein; Validated
Probab=96.06 E-value=0.1 Score=54.80 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 553 DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 553 ~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
+++++|.+.+....+.+.+...|+++++.|+.||..
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333344433333333444445555555555555554
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.91 E-value=0.23 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006645 591 TLQKELELLQRQKAASEQAALNAKR 615 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~r 615 (637)
+++.+++++..++++...++.++++
T Consensus 241 ~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 241 ELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666653
No 75
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.89 E-value=0.24 Score=52.11 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=74.9
Q ss_pred ceEEEe-CCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCC------
Q 006645 249 HSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSL------ 321 (637)
Q Consensus 249 hs~v~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~------ 321 (637)
..++.+ +++|+..++. ..+.+||+.+..-...+. ++.+...-.++.++++||++.........
T Consensus 69 ~~F~al~gskIv~~d~~-------~~t~vyDt~t~av~~~P~---l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQS-------GRTLVYDTDTRAVATGPR---LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred eEEEEecCCeEEEEcCC-------CCeEEEECCCCeEeccCC---CCCCCcceEEEEeCCeEEEeeccCccccccCccce
Confidence 344444 8899988665 237899999988775544 45556666777889999999876433211
Q ss_pred CCceEEEEC--------CCCceEEecCCCCCCCccc-------ccEEEEEcCCEEEE-EeCCCCCCCcCcEEEEECCCCe
Q 006645 322 LNDLHILDL--------ETMTWDEIDAVGVPPSPRS-------DHAAAVHAERYLLI-FGGGSHAACFNDLHVLDLQTME 385 (637)
Q Consensus 322 ~n~i~~yd~--------~t~~W~~~~~~~~~p~~r~-------~h~~~~~~~~~l~v-~GG~~~~~~~~dl~~~d~~t~~ 385 (637)
.-++..|++ ..-.|..+++ +|..+. -.+-+++++..|+| .-|.. ...|.||..+..
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~ 210 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHE 210 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcc
Confidence 122333342 2336777653 233222 12233335667777 33321 237999999999
Q ss_pred eEec
Q 006645 386 WSRP 389 (637)
Q Consensus 386 W~~l 389 (637)
|+++
T Consensus 211 W~~~ 214 (342)
T PF07893_consen 211 WRKH 214 (342)
T ss_pred eeec
Confidence 9997
No 76
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.88 E-value=0.29 Score=46.91 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006645 591 TLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~ 610 (637)
++..+++.+++.++.+++.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 77
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.83 E-value=0.18 Score=55.91 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=6.4
Q ss_pred HhhhHHHHHHHHHHHHH
Q 006645 548 ESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 548 e~~~~~~~~elq~~~~q 564 (637)
+.++++.++.|..++.+
T Consensus 75 e~rL~qrE~rL~qRee~ 91 (514)
T TIGR03319 75 RNELQRLERRLLQREET 91 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 78
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.73 E-value=3.5 Score=43.91 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=82.2
Q ss_pred eeEEEECCEEEEEcccCCCcccCcEEEEEccCCe--EEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCC
Q 006645 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (637)
Q Consensus 189 ~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~ 266 (637)
.+.++.++.||+.+.. ..++.||..+++ |+.-... ....+.+..++.+|+. +.+
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~----------------~~~~~p~v~~~~v~v~-~~~- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE----------------RLSGGVGADGGLVFVG-TEK- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC----------------CcccceEEcCCEEEEE-cCC-
Confidence 4556778888887641 469999988764 7653211 1111233446677754 322
Q ss_pred CCCcceeEEEEECCCCc--eEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCC--ceEEecCCC
Q 006645 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAVG 342 (637)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~--~W~~~~~~~ 342 (637)
..+++||+.+++ |+.... + . ...+.++.++.+|+..+ ...++.+|+.+. .|+......
T Consensus 115 -----g~l~ald~~tG~~~W~~~~~-~----~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 115 -----GEVIALDAEDGKELWRAKLS-S----E-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred -----CEEEEEECCCCcEeeeeccC-c----e-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCC
Confidence 368999987765 875522 1 1 11223345677776432 245899998765 487543210
Q ss_pred CCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCC--eeEe
Q 006645 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (637)
Q Consensus 343 ~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~--~W~~ 388 (637)
....+...+.++. ++ .+++|..+ ..++.+|+.++ .|+.
T Consensus 177 -~~~~~~~~sp~~~-~~-~v~~~~~~-----g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 177 -ALTLRGSASPVIA-DG-GVLVGFAG-----GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred -ceeecCCCCCEEE-CC-EEEEECCC-----CEEEEEEccCCCEeeee
Confidence 0011222233333 55 34455432 25889998765 4764
No 79
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=95.71 E-value=0.25 Score=46.19 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceee
Q 006645 589 METLQKELELLQRQKAASEQAALNAKRQSSGGMWG 623 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~~g~w~ 623 (637)
.+.|+.|.+.++.|++.++++++..+++...|+|.
T Consensus 156 a~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~~~ 190 (192)
T PF11180_consen 156 AQALEAERRAAQAQLRQLQRQVRQLQRQANEPIPS 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45677777778888888888888888888888875
No 80
>PRK12704 phosphodiesterase; Provisional
Probab=95.71 E-value=0.21 Score=55.49 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=7.4
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 006645 548 ESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 548 e~~~~~~~~elq~~~~ql 565 (637)
+.++++.++.|..++.+|
T Consensus 81 e~~L~qrE~rL~~Ree~L 98 (520)
T PRK12704 81 RNELQKLEKRLLQKEENL 98 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 81
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.66 E-value=0.49 Score=45.21 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006645 590 ETLQKELELLQRQKAASEQAALNAKRQ 616 (637)
Q Consensus 590 q~~~~e~~~~~~~~~~~~~~~~~~~r~ 616 (637)
.+++.+++.++.+...+.+.+.+++|+
T Consensus 167 ~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556667777777777777777765
No 82
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.17 Score=55.07 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=29.7
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
.....+...++..+++.+.+++.|+..+.++++.+..++.+|.+.++.+.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666555443
No 83
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.62 E-value=2.2 Score=45.17 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred ceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCccc-ceEEE--eCCEEEEEEcc
Q 006645 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAG-HSLIP--WENKLLSIAGH 264 (637)
Q Consensus 188 ~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~-hs~v~--~~~~lyv~GG~ 264 (637)
-+|.+..+.-.|++||. ...++|...+.|+.--.+ ..+.+. -++.. .|+..++-||.
T Consensus 84 v~al~s~n~G~~l~ag~----i~g~lYlWelssG~LL~v----------------~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT----ISGNLYLWELSSGILLNV----------------LSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eeeeecCCCceEEEeec----ccCcEEEEEeccccHHHH----------------HHhhccceeEEEEeCCCcEEEecCC
Confidence 47777777778888872 234688888887653222 111111 12222 26678888887
Q ss_pred CCCCCcceeEEEEECCCCceEeeccCCCCCC-CCCceEEEEECCEEEEEeCCCCCC---CCCCceEEEECCCCceEEecC
Q 006645 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPV-SRGGQSVTLVGTSLVIFGGEDAKR---SLLNDLHILDLETMTWDEIDA 340 (637)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~---~~~n~i~~yd~~t~~W~~~~~ 340 (637)
++. |.+|.+..-- .........|. .-..|+..+. +--+-+||.+..- ..-+.+-+||++...- +.+
T Consensus 144 Dg~------V~vW~l~~lv-~a~~~~~~~p~~~f~~HtlsIT-Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llt 213 (476)
T KOG0646|consen 144 DGA------VLVWLLTDLV-SADNDHSVKPLHIFSDHTLSIT-DLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLT 213 (476)
T ss_pred Ccc------EEEEEEEeec-ccccCCCccceeeeccCcceeE-EEEecCCCccceEEEecCCceEEEEEecccee--eEE
Confidence 654 4444322100 00000000121 1233333332 2223334432110 0124577788877632 211
Q ss_pred CCCCCCcccccEEEEEcCCEEEEEeCCCC
Q 006645 341 VGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (637)
Q Consensus 341 ~~~~p~~r~~h~~~~~~~~~l~v~GG~~~ 369 (637)
.-.|+.-+++++....+.+.+|+..+
T Consensus 214 ---i~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 214 ---ITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred ---EecCCcceeEEEcccccEEEecCCcc
Confidence 13556667777765566666776543
No 84
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.61 E-value=0.68 Score=38.92 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=41.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 522 ~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
.+.+++..+.-.+..++..+-...+.-.+..+++..++..+.|......|+..||.++.++.+.+..
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444444444566666666666666677889999999999888877
No 85
>PRK09039 hypothetical protein; Validated
Probab=95.56 E-value=0.26 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006645 591 TLQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
.|.+|++.|+.|+..++.+|..+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.50 E-value=0.41 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006645 592 LQKELELLQRQKAASEQAALN 612 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~~ 612 (637)
+++++..++.++...++.+.+
T Consensus 122 l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 122 LEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555533
No 87
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.49 E-value=0.36 Score=49.54 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 589 METLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
+++.+++++.+..+.+.+||+..+.+
T Consensus 254 I~~re~~lq~lEt~q~~leqeva~le 279 (499)
T COG4372 254 IRERERQLQRLETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556665555556666554443
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=0.25 Score=37.55 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=40.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 006645 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKL 586 (637)
Q Consensus 524 ~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~l 586 (637)
+.|+...+..-..+.-|+-+++++.+....+.++.++.+++..+-+++..+|+++-+--|+++
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777788888888877777777777776665554545455555444444443
No 89
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.38 E-value=0.64 Score=44.84 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELE-------SSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG 563 (637)
Q Consensus 515 ~~~~l~~~~~~le-------~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ 563 (637)
+|..|+++..++. ..+.++.+++.+|.+.|..++.+..++++++..++.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544333 334445566666666666666666666666655544
No 90
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.37 E-value=0.36 Score=50.68 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=5.5
Q ss_pred ccEEEEeCCCC
Q 006645 440 NEVHVLKPSHK 450 (637)
Q Consensus 440 ~~v~~~d~~~~ 450 (637)
..+|.+++.+.
T Consensus 267 ~H~yalel~tq 277 (493)
T KOG0804|consen 267 GHCYALELETQ 277 (493)
T ss_pred cceEEEeecce
Confidence 44555555554
No 91
>PTZ00421 coronin; Provisional
Probab=95.34 E-value=5.9 Score=43.94 Aligned_cols=156 Identities=11% Similarity=0.127 Sum_probs=71.4
Q ss_pred CEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcceeEE
Q 006645 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVK 275 (637)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~ 275 (637)
+.+++.||.+ ..+.++|+.+.+-... .. .............++.+++.|+.+. .+.
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~--l~-----------~h~~~V~sla~spdG~lLatgs~Dg------~Ir 193 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEV--IK-----------CHSDQITSLEWNLDGSLLCTTSKDK------KLN 193 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEE--Ec-----------CCCCceEEEEEECCCCEEEEecCCC------EEE
Confidence 3577777643 3578889887643221 10 0011111111122677788887654 488
Q ss_pred EEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCce--EEecCCCCCCCcccccEE
Q 006645 276 VFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTW--DEIDAVGVPPSPRSDHAA 353 (637)
Q Consensus 276 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W--~~~~~~~~~p~~r~~h~~ 353 (637)
+||+.++.-...-. + ....+....+...++..++.+|.+... -..+.+||+.+..- ..... .......+
T Consensus 194 IwD~rsg~~v~tl~-~-H~~~~~~~~~w~~~~~~ivt~G~s~s~--Dr~VklWDlr~~~~p~~~~~~-----d~~~~~~~ 264 (493)
T PTZ00421 194 IIDPRDGTIVSSVE-A-HASAKSQRCLWAKRKDLIITLGCSKSQ--QRQIMLWDTRKMASPYSTVDL-----DQSSALFI 264 (493)
T ss_pred EEECCCCcEEEEEe-c-CCCCcceEEEEcCCCCeEEEEecCCCC--CCeEEEEeCCCCCCceeEecc-----CCCCceEE
Confidence 99998765321111 0 011111111111233444455543221 35688999865431 11110 00111122
Q ss_pred EEE-cCCEEEEEeCCCCCCCcCcEEEEECCCCeeEe
Q 006645 354 AVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (637)
Q Consensus 354 ~~~-~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~ 388 (637)
..+ .++.+++.||... ..|.+||+.+.....
T Consensus 265 ~~~d~d~~~L~lggkgD----g~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 265 PFFDEDTNLLYIGSKGE----GNIRCFELMNERLTF 296 (493)
T ss_pred EEEcCCCCEEEEEEeCC----CeEEEEEeeCCceEE
Confidence 222 2344555665322 247888887766544
No 92
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.26 E-value=0.41 Score=50.27 Aligned_cols=12 Identities=0% Similarity=-0.031 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 006645 599 LQRQKAASEQAA 610 (637)
Q Consensus 599 ~~~~~~~~~~~~ 610 (637)
...+++.++.|+
T Consensus 433 ~d~~I~dLqEQl 444 (493)
T KOG0804|consen 433 KDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.25 E-value=0.52 Score=51.61 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=13.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH
Q 006645 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (637)
Q Consensus 522 ~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~ 553 (637)
++++|.......+.+...|+.++.+++.++..
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444433
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.22 E-value=0.23 Score=47.84 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 006645 575 LEVDVAELRQKLQ 587 (637)
Q Consensus 575 le~~~~el~~~lq 587 (637)
|+++-++|+++++
T Consensus 137 L~~~n~~L~~~l~ 149 (206)
T PRK10884 137 LKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.22 E-value=3.9 Score=41.18 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=73.9
Q ss_pred EEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEE-eC-CEEEEEEccCCCCCcceeE
Q 006645 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WE-NKLLSIAGHTKDPSEIIQV 274 (637)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~-~~-~~lyv~GG~~~~~~~~~~v 274 (637)
++|+.++.+ +.+.+||+.+++-...-... ..++ +++. -+ ..+|+.++.. +.+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~------------~~~~---~l~~~~dg~~l~~~~~~~------~~v 55 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVG------------QRPR---GITLSKDGKLLYVCASDS------DTI 55 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECC------------CCCC---ceEECCCCCEEEEEECCC------CeE
Confidence 577777643 36889999887643322110 1111 1222 23 3577776542 358
Q ss_pred EEEECCCCceEeeccCCCCCCCCCceEEEEE--CCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccE
Q 006645 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (637)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~ 352 (637)
.+||+.+++....-..+ +.+ ..++.. ++.+|+.++. .+.+.+||+.+..-...- +.....++
T Consensus 56 ~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~-----~~~~~~~~ 119 (300)
T TIGR03866 56 QVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEI-----PVGVEPEG 119 (300)
T ss_pred EEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEe-----eCCCCcce
Confidence 89999887765432211 111 122222 3356665542 246899999875422111 11111234
Q ss_pred EEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCee
Q 006645 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (637)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W 386 (637)
+++..++.+++++..+. +.++.||..+..-
T Consensus 120 ~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred EEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 55555666777665432 2366778776543
No 96
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.14 E-value=0.31 Score=50.43 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 006645 592 LQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
++++.+.+..+.....++++..+
T Consensus 111 ~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 111 FQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445554333
No 97
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=95.11 E-value=0.042 Score=53.18 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=53.9
Q ss_pred ccCCCChHHHHHHhhhheeeeeCCCCCCC-------------CC-CCCH-------hhhHHHHHHhcCCCCCHHHHHHHH
Q 006645 36 LTSKFSNDSALLLYALYQQATVGPCNVPK-------------PS-SWSP-------VEQSKWKSWQGLGNMATTEAMRLF 94 (637)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~-------------p~-~~~~-------~~~~k~~aw~~~~~~s~~~a~~~y 94 (637)
+.-+.+.++.+.|-||.-|+..|+++.+. |. +.+- ....--++|+++.|||+.+||.+|
T Consensus 113 g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~y 192 (207)
T smart00295 113 GRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKY 192 (207)
T ss_pred CccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 44577899999999999999999998542 11 1111 122234779999999999999999
Q ss_pred HHHHHHhCCCccc
Q 006645 95 VKILEEEDPGWYS 107 (637)
Q Consensus 95 v~~~~~~~~~~~~ 107 (637)
|+++.++ |.|..
T Consensus 193 l~~~~~l-p~fG~ 204 (207)
T smart00295 193 LELAEKL-PTYGV 204 (207)
T ss_pred HHHhccc-cccCc
Confidence 9999987 87653
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.03 E-value=0.23 Score=51.43 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006645 589 METLQKELELLQRQKAASEQ 608 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~ 608 (637)
.+.++.+++..+.++..+++
T Consensus 115 ~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444455545544444443
No 99
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.93 E-value=0.62 Score=48.00 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=6.3
Q ss_pred CceeeeccCC
Q 006645 619 GGMWGWLAGA 628 (637)
Q Consensus 619 ~g~w~~~~~~ 628 (637)
.+.|. |+|-
T Consensus 173 ~~~~~-I~~~ 181 (302)
T PF10186_consen 173 SSEYT-ICGL 181 (302)
T ss_pred CCCee-ecCc
Confidence 56677 7775
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.87 E-value=1 Score=47.53 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=85.2
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCE-EEEEEccCCCCCccee
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENK-LLSIAGHTKDPSEIIQ 273 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~-lyv~GG~~~~~~~~~~ 273 (637)
..-|.+++|.++. -.+|..|-.++. .+..+.- ...|...... .-+|. ..+++|+.. -
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l----------~~fPi~~a~f-~p~G~~~i~~s~rrk------y 281 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHL----------EKFPIQKAEF-APNGHSVIFTSGRRK------Y 281 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeee----------ccCccceeee-cCCCceEEEecccce------E
Confidence 3568888886543 235555555554 3332210 0111111111 22444 777777643 4
Q ss_pred EEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEE
Q 006645 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (637)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~ 353 (637)
+++||+.+.+-.++.+.+.++.+-...-.+...+.++++-|.. .-|+++...|+.|..--.. +..-...+.
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~Ki---eG~v~~~~f 352 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKI---EGVVSDFTF 352 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeee---ccEEeeEEE
Confidence 8999999999999976554543222222334455566666653 3478888888888432111 111112222
Q ss_pred EEEcCCEEEEEeCCCCCCCcCcEEEEECCCCee
Q 006645 354 AVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (637)
Q Consensus 354 ~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W 386 (637)
. ..+..||++||. ..||++|+.++..
T Consensus 353 s-Sdsk~l~~~~~~------GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 353 S-SDSKELLASGGT------GEVYVWNLRQNSC 378 (514)
T ss_pred e-cCCcEEEEEcCC------ceEEEEecCCcce
Confidence 2 234578888875 3699999998754
No 101
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.86 E-value=3.4 Score=44.01 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=80.6
Q ss_pred eEEEECCEEEEEcccCCCcccCcEEEEEccCC--eEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCC
Q 006645 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (637)
Q Consensus 190 a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~ 267 (637)
+.++.++.+|+..+ ...++.+|+.++ .|+...... ....+...+.+..++.+| +|...
T Consensus 140 ~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~-----------~~~~~~~~sp~~~~~~v~-~~~~~-- 199 (377)
T TIGR03300 140 PPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTP-----------ALTLRGSASPVIADGGVL-VGFAG-- 199 (377)
T ss_pred CCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCC-----------ceeecCCCCCEEECCEEE-EECCC--
Confidence 33456777777544 245899999876 476542210 001122233345566554 44322
Q ss_pred CCcceeEEEEECCCCc--eEeeccC--CCCCCC---CCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCC--ceEEe
Q 006645 268 PSEIIQVKVFDLQTCS--WSTLKTY--GKPPVS---RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEI 338 (637)
Q Consensus 268 ~~~~~~v~~yd~~t~~--W~~~~~~--g~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~--~W~~~ 338 (637)
..+..+|+.+++ |...... +..... ....+.++.++.+|+... ...+++||+.+. .|..-
T Consensus 200 ----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 200 ----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred ----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeec
Confidence 258899988764 7643211 000000 111223345777777542 245899998775 37553
Q ss_pred cCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCC--eeEe
Q 006645 339 DAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (637)
Q Consensus 339 ~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~--~W~~ 388 (637)
. + ..+...+.+++||+.... ..++++|..++ .|..
T Consensus 269 ~-----~----~~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 269 A-----S----SYQGPAVDDNRLYVTDAD------GVVVALDRRSGSELWKN 305 (377)
T ss_pred c-----C----CccCceEeCCEEEEECCC------CeEEEEECCCCcEEEcc
Confidence 1 1 111222346778776421 35899998765 4765
No 102
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.85 E-value=8.1 Score=42.89 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=72.8
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCC--eEEEeeecccccCCCCCCCCCCCCcccc
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGH 249 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~h 249 (637)
.|..... . ......+.++.++.||+.... ..++.+|..|+ .|+.-..... . ...+ .....
T Consensus 42 ~W~~~~~--~--~~~~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~----~---~~~~-~~~~~ 103 (488)
T cd00216 42 AWTFSTG--D--ERGQEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPA----D---RGCC-DVVNR 103 (488)
T ss_pred eEEEECC--C--CCCcccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCc----c---cccc-ccccC
Confidence 7875332 1 123344556779999987652 46899999885 4876422100 0 0000 11111
Q ss_pred eEEEeC-CEEEEEEccCCCCCcceeEEEEECCCCc--eEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCC---CCCC
Q 006645 250 SLIPWE-NKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR---SLLN 323 (637)
Q Consensus 250 s~v~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~---~~~n 323 (637)
..+..+ ++||+.. . ...++++|..|++ |+.-......+......+.++.++.+| +|..+... ....
T Consensus 104 g~~~~~~~~V~v~~-~------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g 175 (488)
T cd00216 104 GVAYWDPRKVFFGT-F------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRG 175 (488)
T ss_pred CcEEccCCeEEEec-C------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCc
Confidence 234445 7777643 2 2368999988755 876532100000001122344455555 44322211 1246
Q ss_pred ceEEEECCCC--ceEEec
Q 006645 324 DLHILDLETM--TWDEID 339 (637)
Q Consensus 324 ~i~~yd~~t~--~W~~~~ 339 (637)
.++.||..|. .|..-.
T Consensus 176 ~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 176 ALRAYDVETGKLLWRFYT 193 (488)
T ss_pred EEEEEECCCCceeeEeec
Confidence 7899999875 587643
No 103
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.83 E-value=0.99 Score=41.42 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG 563 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ 563 (637)
.+...+.....++.+|+..++.++.++.++++++...+.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~ 94 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555444444444444444433
No 104
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=94.79 E-value=0.51 Score=44.61 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 556 KELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT----METLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 556 ~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~----~q~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
..|.+.-.+|.+++.||..|.+--.-|+++|++ .+.|..+++.+..++..+.++|..++
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678899999999998888888888888 34577777777777777777775544
No 105
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=94.79 E-value=0.066 Score=47.27 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=56.0
Q ss_pred HHHHHHHHhcccCCCCcccccccCCCChHHHHHHhhhheeeeeCCCCCCC---CCCCCH--------------------h
Q 006645 15 RFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPK---PSSWSP--------------------V 71 (637)
Q Consensus 15 ~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~---p~~~~~--------------------~ 71 (637)
-|..+...|- .+.-..+.++.++|-||.-|+..|+++.+. .+.++. .
T Consensus 14 ly~Q~~~~vl----------~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~ 83 (126)
T PF00373_consen 14 LYLQARRDVL----------QGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKM 83 (126)
T ss_dssp HHHHHHHHHH----------TTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCS
T ss_pred HHHHHHHHHH----------cCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhh
Confidence 3566666663 345589999999999999999999998321 111111 1
Q ss_pred hhHHH-----HHHhcCCCCCHHHHHHHHHHHHHHhCCCcc
Q 006645 72 EQSKW-----KSWQGLGNMATTEAMRLFVKILEEEDPGWY 106 (637)
Q Consensus 72 ~~~k~-----~aw~~~~~~s~~~a~~~yv~~~~~~~~~~~ 106 (637)
....| ..|+++.|||+.+||..|++++.++ |.|.
T Consensus 84 ~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~-p~yG 122 (126)
T PF00373_consen 84 KQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSL-PTYG 122 (126)
T ss_dssp THHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTS-TTTT
T ss_pred hHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-CCCC
Confidence 22223 6789999999999999999999874 6664
No 106
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.78 E-value=2.8 Score=40.21 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=79.1
Q ss_pred eEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeC-CEEEEEEccCCCC
Q 006645 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDP 268 (637)
Q Consensus 190 a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~-~~lyv~GG~~~~~ 268 (637)
|++...+++|+|-| +.+|+++............... +..| .....+....+ +++|+|-|.
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w-------~~~p-~~IDAa~~~~~~~~~yfFkg~---- 71 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFW-------PSLP-SPVDAAFERPDTGKIYFFKGD---- 71 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhC-------CCCC-CCccEEEEECCCCEEEEECCC----
Confidence 44556699999988 4678887652111111111000 1112 22222222223 899999764
Q ss_pred CcceeEEEEECCCCceEeecc---CCCCCC-CCCceEEEEE--CCEEEEEeCCCCCCCCCCceEEEECCCCceEEec--C
Q 006645 269 SEIIQVKVFDLQTCSWSTLKT---YGKPPV-SRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEID--A 340 (637)
Q Consensus 269 ~~~~~v~~yd~~t~~W~~~~~---~g~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~--~ 340 (637)
..|+|+..+..+..+.. .+-++. .... ++... ++++|+|-| +..|+||..+.+...-- .
T Consensus 72 ----~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~ 138 (194)
T cd00094 72 ----KYWVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKL 138 (194)
T ss_pred ----EEEEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcc
Confidence 57788766533322111 111111 1122 22233 579999987 35788887655432110 0
Q ss_pred C-CC-CCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe
Q 006645 341 V-GV-PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (637)
Q Consensus 341 ~-~~-~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~ 385 (637)
. .. +-.|..-.++....++.+|+|-|. ..|.||..+.+
T Consensus 139 i~~~w~g~p~~idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 139 IETDFPGVPDKVDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred hhhcCCCcCCCcceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 0 00 012222234444445789999884 58999988765
No 107
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.73 E-value=0.52 Score=58.54 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=5.4
Q ss_pred HHhHHHHHHHHhhh
Q 006645 516 IATLKAEKEELESS 529 (637)
Q Consensus 516 ~~~l~~~~~~le~~ 529 (637)
+..+......|+++
T Consensus 316 L~ELe~rL~kLEkQ 329 (1486)
T PRK04863 316 LAELNEAESDLEQD 329 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.72 E-value=1 Score=44.22 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=5.9
Q ss_pred HhhhhhhHHHHHHHH
Q 006645 569 QSRCFKLEVDVAELR 583 (637)
Q Consensus 569 q~~~~~le~~~~el~ 583 (637)
+++...|+.++.++.
T Consensus 102 k~r~~~le~el~~l~ 116 (239)
T COG1579 102 KERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444443333
No 109
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.72 E-value=0.78 Score=46.23 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 006645 575 LEVDVAELRQKLQTMETLQKELELL 599 (637)
Q Consensus 575 le~~~~el~~~lq~~q~~~~e~~~~ 599 (637)
|+.-.++..++.++.|+|.||+-+.
T Consensus 150 L~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3333444444444455555554433
No 110
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.70 E-value=0.39 Score=60.16 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=16.5
Q ss_pred CCCCCCHhhhHHHHHHhcCCCCCHHHHHHHHH
Q 006645 64 KPSSWSPVEQSKWKSWQGLGNMATTEAMRLFV 95 (637)
Q Consensus 64 ~p~~~~~~~~~k~~aw~~~~~~s~~~a~~~yv 95 (637)
-||+-|...-..-++=..+=|+|.+|=|-.|-
T Consensus 313 i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~ 344 (1930)
T KOG0161|consen 313 IPGVDDAEEFQETDEAMDILGFSEEEKISIFR 344 (1930)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34444444333344444556666666666554
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.69 E-value=0.78 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=11.1
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHH
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLK 541 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~ 541 (637)
..|++..+.|+++-...+.+..+|.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444445444444444443333
No 112
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.60 E-value=1.2 Score=44.15 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHH
Q 006645 572 CFKLEVDVAELRQKLQT----METLQKELELLQRQKAASEQAAL 611 (637)
Q Consensus 572 ~~~le~~~~el~~~lq~----~q~~~~e~~~~~~~~~~~~~~~~ 611 (637)
...++.++..|.++|.. .+..++.+..|+.+...++.+|.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655 33455556666666666666653
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.57 E-value=0.16 Score=48.79 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKL 586 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~l 586 (637)
++++..++.....+..+.+..+..++++++..+.+....+...+..+..-+.++..++.++.++..-+
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444444444444444444444333
No 114
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.53 E-value=4.6 Score=43.54 Aligned_cols=147 Identities=12% Similarity=0.040 Sum_probs=79.4
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
..++++|+.++.-..+.... ..... ....-++ .|++..... ....++.+|+.++....+..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~-------------~~~~~-~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP-------------GMNGA-PAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cEEEEEECCCCCEEEeecCC-------------CCccc-eEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCC
Confidence 57999999988766553321 11111 1122244 566554332 23579999999888777643
Q ss_pred CCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCC
Q 006645 290 YGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (637)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~ 368 (637)
.... ... ....-++ +|++.....+ ...||++|+.+..+..+...+ ..........++..+++....
T Consensus 276 ~~~~---~~~-~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 276 GPGI---DTE-PSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CCCC---CCC-EEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEcc
Confidence 2111 111 1111244 4544433221 247999999998887775332 222233343444455555433
Q ss_pred CCCCcCcEEEEECCCCeeEecc
Q 006645 369 HAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 369 ~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
. ....++++|+.+..+..+.
T Consensus 343 ~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 343 G--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred C--CceEEEEEeCCCCCeEEcc
Confidence 2 1246999999987776654
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.53 E-value=0.64 Score=49.16 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 539 QLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 539 ~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
.-+++.+.++.++.++++++..++++|-+-+....++++.++++..+|+.++
T Consensus 56 ~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 3333333444444444455555555554444444555555555555555444
No 116
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.67 Score=50.69 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006645 533 EKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQAALN 612 (637)
Q Consensus 533 ~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~ 612 (637)
.+...++|+.++.+++..+.++++++..++.+|.+-..+......+-.+++++...+..|++++++......++++.|.+
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555544444443333333444444444555555555555555555555544
Q ss_pred Hh
Q 006645 613 AK 614 (637)
Q Consensus 613 ~~ 614 (637)
..
T Consensus 507 l~ 508 (652)
T COG2433 507 LR 508 (652)
T ss_pred HH
Confidence 44
No 117
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.42 E-value=1.3 Score=45.72 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006645 589 METLQKELELLQRQKAASEQAALNAKR 615 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~~~~r 615 (637)
++++...++....++++...++.++++
T Consensus 234 l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 234 LQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666666664
No 118
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.40 E-value=1.9 Score=39.51 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 533 EKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 533 ~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
....+.++..++...+..++.++.++...++++...+.++..++.++..++..+..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555666666666666555555555555555544444443
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=0.62 Score=52.00 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.3
Q ss_pred CHhhhHHHHH
Q 006645 69 SPVEQSKWKS 78 (637)
Q Consensus 69 ~~~~~~k~~a 78 (637)
...+|.|+++
T Consensus 11 T~~Er~K~~~ 20 (1118)
T KOG1029|consen 11 TDEERQKHDA 20 (1118)
T ss_pred chHHHHHHHH
Confidence 3344444443
No 120
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.36 E-value=0.8 Score=43.52 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=56.8
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQK 594 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~ 594 (637)
.|..|+.+.++.+.++..+-.++-.|+.+|.+....+...+.++...+..+.... ..++.-..+|+++..+.+-+..
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~---~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQ---LELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---HhHHHhHHHHHHHhCHHHHhhh
Confidence 3677888888888888888888888888888888888887777777766653332 3333333444444444333333
Q ss_pred HHHHHHHHHHHHHHHH
Q 006645 595 ELELLQRQKAASEQAA 610 (637)
Q Consensus 595 e~~~~~~~~~~~~~~~ 610 (637)
++..+..++..+.+++
T Consensus 88 kl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 88 KLGQLEAELAELREEL 103 (202)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 3333333333333333
No 121
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.30 E-value=1 Score=44.68 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=33.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
...+.+...+.++........+.++.+.+..+.|..++..|...+.|+..++.++.+|...|..
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 3333344444444444444444555555555555555556655555555555555555555544
No 122
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.29 E-value=1.6 Score=39.15 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 006645 538 IQLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 538 ~~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
..|+.++..+...+.+++.+|..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333333
No 123
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.27 E-value=6 Score=39.25 Aligned_cols=164 Identities=11% Similarity=0.052 Sum_probs=90.2
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcc--e
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI--I 272 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~--~ 272 (637)
++.||+... ..+.++|+.++++..+..... ...+..+..-.++.-++.||+---........ .
T Consensus 51 ~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~--------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 51 DGRLYVADS-------GGIAVVDPDTGKVTVLADLPD--------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp TSEEEEEET-------TCEEEEETTTTEEEEEEEEET--------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred CCEEEEEEc-------CceEEEecCCCcEEEEeeccC--------CCcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence 688888765 345777999999998876420 01133444444444577877754322221222 6
Q ss_pred eEEEEECCCCceEeeccCCCCCCCCCceEEEEE--CCEEEEEeCCCCCCCCCCceEEEECCCCc--eEEecCCCCCCCc-
Q 006645 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVGVPPSP- 347 (637)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~n~i~~yd~~t~~--W~~~~~~~~~p~~- 347 (637)
.++++++. ++...+... +. .--+.+.. ++.||+.-- ..+.|++|++.... +.........+..
T Consensus 116 ~v~~~~~~-~~~~~~~~~--~~---~pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVADG--LG---FPNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGP 183 (246)
T ss_dssp EEEEEETT-SEEEEEEEE--ES---SEEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSS
T ss_pred ceEEECCC-CeEEEEecC--cc---cccceEECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCC
Confidence 79999999 666555431 11 11233333 336777432 24679999986433 4332211111111
Q ss_pred ccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 348 RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 348 r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
..--.+++-.++.|||..-. .+.|++||+....-..+.
T Consensus 184 g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE
T ss_pred cCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc
Confidence 12335666667789987321 246999999976666664
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.20 E-value=2.7 Score=37.73 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=36.9
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+..|+.+.+..++.+.....+.+.-+..+..++.++..+.++++..+..|..-.+.-..|.++.++.|.++.+++
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555555555555554433333344444444444444433
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.17 E-value=0.71 Score=48.24 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 006645 595 ELELLQRQKAAS 606 (637)
Q Consensus 595 e~~~~~~~~~~~ 606 (637)
+.++++.+.++.
T Consensus 252 ~k~~l~~eI~e~ 263 (325)
T PF08317_consen 252 QKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 126
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.16 E-value=4.7 Score=40.02 Aligned_cols=148 Identities=12% Similarity=0.064 Sum_probs=82.7
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEE--eCCEEEEEEccCCCCCcce
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKDPSEII 272 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~--~~~~lyv~GG~~~~~~~~~ 272 (637)
++.||+..- ....++++|+.+..-..+... . . .+++. -++.||+....
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~--------------~-~--~G~~~~~~~g~l~v~~~~-------- 60 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP--------------G-P--NGMAFDRPDGRLYVADSG-------- 60 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESS--------------S-E--EEEEEECTTSEEEEEETT--------
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC--------------C-C--ceEEEEccCCEEEEEEcC--------
Confidence 477887742 235799999999877665331 1 2 23333 36888888654
Q ss_pred eEEEEECCCCceEeeccC--CCCCCCCCceEEEEECCEEEEEeCCCCCCCCC--CceEEEECCCCceEEecCCCCCCCcc
Q 006645 273 QVKVFDLQTCSWSTLKTY--GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLL--NDLHILDLETMTWDEIDAVGVPPSPR 348 (637)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~--n~i~~yd~~t~~W~~~~~~~~~p~~r 348 (637)
.+.++|+.+++++.+... +..+..+..-.++.-++.||+..-........ ..++++++. .+...+... -.
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----~~ 134 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----LG 134 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----ES
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-----cc
Confidence 346779999999888653 11122233323333366777753221111111 569999998 665555321 11
Q ss_pred cccEEEEEcCC-EEEEEeCCCCCCCcCcEEEEECCC
Q 006645 349 SDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQT 383 (637)
Q Consensus 349 ~~h~~~~~~~~-~l~v~GG~~~~~~~~dl~~~d~~t 383 (637)
.-..+++..++ .||+.-- ..+.|+.|++..
T Consensus 135 ~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~ 165 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDA 165 (246)
T ss_dssp SEEEEEEETTSSEEEEEET-----TTTEEEEEEEET
T ss_pred cccceEECCcchheeeccc-----ccceeEEEeccc
Confidence 12345554444 5776432 234599999863
No 127
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.05 E-value=0.69 Score=54.14 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=22.1
Q ss_pred CchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH
Q 006645 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~ 553 (637)
.+.++++..|+++..++++..++.+...+.+++..++.+++.++
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 559 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK 559 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555444444333333333333333
No 128
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.02 E-value=1.8 Score=41.72 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 540 LKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 540 l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
.+..|.....++..+++++...+-+-+.-+.++.+++++..+|.++...
T Consensus 84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555666777776666666677777888877777766655
No 129
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.00 E-value=1.5 Score=43.98 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 006645 576 EVDVAELRQKLQT 588 (637)
Q Consensus 576 e~~~~el~~~lq~ 588 (637)
++++.+|++++.+
T Consensus 83 ~~el~~L~~qi~~ 95 (251)
T PF11932_consen 83 EQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.93 E-value=0.73 Score=48.55 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCE-EEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCccee
Q 006645 195 QDK-MYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (637)
Q Consensus 195 ~~~-lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~ 273 (637)
+|. ..+++|.. .-+|.||+.+.+-.++.++. .++..-....-|..++.++++-|..+.
T Consensus 268 ~G~~~i~~s~rr-----ky~ysyDle~ak~~k~~~~~----------g~e~~~~e~FeVShd~~fia~~G~~G~------ 326 (514)
T KOG2055|consen 268 NGHSVIFTSGRR-----KYLYSYDLETAKVTKLKPPY----------GVEEKSMERFEVSHDSNFIAIAGNNGH------ 326 (514)
T ss_pred CCceEEEecccc-----eEEEEeeccccccccccCCC----------CcccchhheeEecCCCCeEEEcccCce------
Confidence 444 66666632 34789999999999887653 122222223345556677777777554
Q ss_pred EEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEE
Q 006645 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (637)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~ 353 (637)
|+.+...|+.|..--. ++.....++...-+..|++.||+ ..||++|+.++.-...-.. -...++-+.
T Consensus 327 I~lLhakT~eli~s~K---ieG~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~~rf~D---~G~v~gts~ 393 (514)
T KOG2055|consen 327 IHLLHAKTKELITSFK---IEGVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCLHRFVD---DGSVHGTSL 393 (514)
T ss_pred EEeehhhhhhhhheee---eccEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceEEEEee---cCccceeee
Confidence 7888888888865422 33334444444445678888885 3699999988743332211 111233344
Q ss_pred EEEcCCEEEEEeCCCCCCCcCcEEEEECC
Q 006645 354 AVHAERYLLIFGGGSHAACFNDLHVLDLQ 382 (637)
Q Consensus 354 ~~~~~~~l~v~GG~~~~~~~~dl~~~d~~ 382 (637)
|...++.++.+| ...+ -|-+||..
T Consensus 394 ~~S~ng~ylA~G-S~~G----iVNIYd~~ 417 (514)
T KOG2055|consen 394 CISLNGSYLATG-SDSG----IVNIYDGN 417 (514)
T ss_pred eecCCCceEEec-cCcc----eEEEeccc
Confidence 443455455554 3322 25566644
No 131
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.86 E-value=1.2 Score=45.20 Aligned_cols=68 Identities=32% Similarity=0.432 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHH
Q 006645 535 LQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME----TLQKELELLQRQ 602 (637)
Q Consensus 535 ~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q----~~~~e~~~~~~~ 602 (637)
.++..|.++|..+.+....-++|+-....|+...|.++.++-.+-.+|++.|+... .|..|+.+++.+
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555666666666666555566666665532 344444455444
No 132
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.84 E-value=1.5 Score=45.31 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006645 592 LQKELELLQRQKAASEQ 608 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~ 608 (637)
...+.++++.++++.++
T Consensus 244 ~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 244 LTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 133
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.84 E-value=1.1 Score=44.68 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 006645 574 KLEVDVAELRQKLQTME----TLQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 574 ~le~~~~el~~~lq~~q----~~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
+|++++.+++..+..+. .++++...++.++..-...+..+
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~a 122 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEA 122 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665555433 35555666665554444444333
No 134
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.83 E-value=0.93 Score=49.31 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 538 IQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 538 ~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
+.++.+++++|.+++.++++..+.+.+
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 135
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.71 E-value=4.9 Score=40.23 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=94.2
Q ss_pred eeEEE-ECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCC
Q 006645 189 HGAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (637)
Q Consensus 189 ~a~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~ 267 (637)
.+... .++.||.--|..+. +.+..||+.|++-..... +|...++=+++.++++||..-=
T Consensus 48 QGL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~-------------l~~~~FgEGit~~~d~l~qLTW---- 107 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVP-------------LPPRYFGEGITILGDKLYQLTW---- 107 (264)
T ss_dssp EEEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE--------------TTT--EEEEEEETTEEEEEES----
T ss_pred ccEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEE-------------CCccccceeEEEECCEEEEEEe----
Confidence 34444 57899998886553 678999999988665544 3667788899999999999843
Q ss_pred CCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEE-ecCC-CCCC
Q 006645 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAV-GVPP 345 (637)
Q Consensus 268 ~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~-~~~~-~~~p 345 (637)
....+++||+.+.+ .+.. .+.+.-+.++|..+..||+--| ++.++.+||.+.+=.. +... +..|
T Consensus 108 --k~~~~f~yd~~tl~--~~~~---~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 108 --KEGTGFVYDPNTLK--KIGT---FPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp --SSSEEEEEETTTTE--EEEE---EE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred --cCCeEEEEccccce--EEEE---EecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEE
Confidence 24468999998754 3322 3444678889988889999877 4679999998764332 2211 0011
Q ss_pred CcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEe
Q 006645 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (637)
Q Consensus 346 ~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~ 388 (637)
..+.. =+-.+ ++.||.- --..+.|.+.|+.++.-..
T Consensus 174 v~~LN-ELE~i-~G~IyAN-----VW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 174 VSNLN-ELEYI-NGKIYAN-----VWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp ---EE-EEEEE-TTEEEEE-----ETTSSEEEEEETTT-BEEE
T ss_pred CCCcE-eEEEE-cCEEEEE-----eCCCCeEEEEeCCCCeEEE
Confidence 11110 01111 3333331 1234678999999987554
No 136
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.59 E-value=1 Score=55.73 Aligned_cols=7 Identities=43% Similarity=0.700 Sum_probs=2.7
Q ss_pred EEEEEcC
Q 006645 427 VIVAFGG 433 (637)
Q Consensus 427 ~l~v~GG 433 (637)
.++-.||
T Consensus 646 ~~v~~~G 652 (1179)
T TIGR02168 646 RIVTLDG 652 (1179)
T ss_pred eEEecCC
Confidence 3333344
No 137
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=93.59 E-value=3.9 Score=38.78 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=15.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006645 583 RQKLQTMETLQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 583 ~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
.+|-+-++.-.+.++.|++++.....++..+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555556666655555555443
No 138
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.57 E-value=2.1 Score=46.48 Aligned_cols=9 Identities=33% Similarity=0.823 Sum_probs=6.6
Q ss_pred cCCCceeee
Q 006645 616 QSSGGMWGW 624 (637)
Q Consensus 616 ~~~~g~w~~ 624 (637)
.+.+|.||=
T Consensus 199 ~K~rG~WGE 207 (475)
T PRK10361 199 NKTQGNWGE 207 (475)
T ss_pred CCcCcchHH
Confidence 467899974
No 139
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.54 E-value=2.7 Score=35.48 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=22.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq 587 (637)
.++.+..+.+..+..|+..|+.......++-++-...+..++.-+..-..+.+.+.+|+.++.
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333333333222222333333444444433
No 140
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=1.1 Score=50.18 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=10.6
Q ss_pred CCChHHHHHHhhhheeee
Q 006645 39 KFSNDSALLLYALYQQAT 56 (637)
Q Consensus 39 ~~~~~~~l~ly~l~kqa~ 56 (637)
.++++++++-.+-|-|-+
T Consensus 9 avT~~Er~K~~~qF~~Lk 26 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQLK 26 (1118)
T ss_pred ccchHHHHHHHHHHhccC
Confidence 356666666666665554
No 141
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.49 E-value=2.6 Score=37.05 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 006645 589 METLQKELELLQRQKAASEQAALNAKRQSSGG 620 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~~g 620 (637)
+..++++.+-++.+....++++++.-++.+.|
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44567777777778888888888877665444
No 142
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.46 E-value=1.6 Score=51.14 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006645 535 LQSIQLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 535 ~~~~~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
..+.+|+.++.+.++.++.+..++.+.
T Consensus 696 ~~~~~l~~~~~q~~~~~~~~~~em~el 722 (1074)
T KOG0250|consen 696 KKLRELSEHIEQIKRRIRKKRAEMTEL 722 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 143
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.45 E-value=1.7 Score=44.69 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 006645 539 QLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDV 579 (637)
Q Consensus 539 ~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~ 579 (637)
.++.++.+++.++..+.++++..+.++.+.+++..++.+.+
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333333
No 144
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.45 E-value=1.8 Score=41.14 Aligned_cols=73 Identities=26% Similarity=0.330 Sum_probs=44.7
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
|-.|+....+....++..+.....|+..+..+..++...+.+|+......+.-++...+|+.++++|+..+..
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 3345555555556666666666666666666666666666666666555555555666667777766666655
No 145
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.40 E-value=1.4 Score=55.01 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhH
Q 006645 530 LSKEKLQSIQLKQDLTEAESQNT 552 (637)
Q Consensus 530 ~~e~~~~~~~l~~~l~e~e~~~~ 552 (637)
+.+.+....++...+.+.+.++.
T Consensus 302 Le~tE~nL~rI~diL~ELe~rL~ 324 (1486)
T PRK04863 302 LAAEQYRLVEMARELAELNEAES 324 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 146
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.39 E-value=1.1 Score=52.80 Aligned_cols=90 Identities=27% Similarity=0.313 Sum_probs=52.4
Q ss_pred HHHHhHHHHHHHHhhhhhHHH-------HHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006645 514 HLIATLKAEKEELESSLSKEK-------LQSIQLKQDLTEAESQNTD-LYKELQSVRGQLAAEQSRCFKLEVDVAELRQK 585 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~-------~~~~~l~~~l~e~e~~~~~-~~~elq~~~~ql~~~q~~~~~le~~~~el~~~ 585 (637)
..++.|+.+..+++.++.+.. .++..++.++++.++++++ +.+-+...+.+++..+.+...|++++++++++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~ 367 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAA 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555433 3445666677766666543 33334445556666666666777777777777
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 006645 586 LQTMETLQKELELLQRQK 603 (637)
Q Consensus 586 lq~~q~~~~e~~~~~~~~ 603 (637)
+.++-..+.|+..|+++.
T Consensus 368 ~~~~~~~~~e~~~L~Re~ 385 (754)
T TIGR01005 368 SAQAGEQQVDLDALQRDA 385 (754)
T ss_pred HHhCcHhHHHHHHHHHHH
Confidence 766555555555555443
No 147
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.36 E-value=1.9 Score=43.32 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006645 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQK 585 (637)
Q Consensus 527 e~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~ 585 (637)
++...+...+.+.|.+++..++++++.++...+..+.++...+.+...|++++.++.+-
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444433
No 148
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.35 E-value=0.83 Score=48.96 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=30.8
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKEL 558 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~el 558 (637)
+.++.|-.+.++++.++++...++++|+++.++++++.+...+++
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 466777777778888888888888888777665555444444333
No 149
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.32 E-value=1.2 Score=35.15 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=32.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 524 ~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
..|+..++..-.++.-|+-+|+|.+.+...+.++.+..+..
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~ 47 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777777788888889999998888888888877776554
No 150
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.28 E-value=1.5 Score=49.65 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=16.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 006645 545 TEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELR 583 (637)
Q Consensus 545 ~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~ 583 (637)
.+...++.++++++.+.+..+.....+...++.++.+|+
T Consensus 333 ~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 333 NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333334444444333
No 151
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.24 E-value=1.6 Score=51.19 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKEL-QSVRGQLAAEQSRCFKLEVDVAELRQ 584 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~el-q~~~~ql~~~q~~~~~le~~~~el~~ 584 (637)
+++.+.++++..+++++..+..+++++..++++. +++..++.+.+.+..+|++++..++.
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555 44444444444444444444444433
No 152
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.16 E-value=0.72 Score=43.76 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 006645 535 LQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKL 586 (637)
Q Consensus 535 ~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~l 586 (637)
..+..++.++++...+..++.+++.+++..+.+-|+|...|+.+...|.+++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555444443
No 153
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=93.13 E-value=1.2 Score=41.72 Aligned_cols=74 Identities=26% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006645 534 KLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 534 ~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~ 610 (637)
+-+...+.+.|.+-+.+...|+..|+.-+.|-++-..+-.+...+.+.|+.+ .+..+.+|.++|++...++.+.
T Consensus 111 eAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e---~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 111 EAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAE---RRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555555555555555544443322222222233333333222 2234455555666666666554
No 154
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.11 E-value=2 Score=46.49 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 006645 598 LLQRQKAASEQAA 610 (637)
Q Consensus 598 ~~~~~~~~~~~~~ 610 (637)
+.+.++...+.++
T Consensus 250 ~~~~~l~~~~~~l 262 (423)
T TIGR01843 250 EAQARLAELRERL 262 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 155
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.05 E-value=2.6 Score=36.87 Aligned_cols=75 Identities=25% Similarity=0.361 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHh----HHHHHHHHHHH
Q 006645 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ---LAAEQSRCFKLEVDVAELRQKLQT----METLQKELELL 599 (637)
Q Consensus 527 e~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q---l~~~q~~~~~le~~~~el~~~lq~----~q~~~~e~~~~ 599 (637)
+..++..+.++..++.++...+.+-.++.+|+-..-.. +.....+...|+.++++++++.+- +.++..++++|
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33344444444444444444444444444443322221 122223334555555555555444 23444444444
Q ss_pred HH
Q 006645 600 QR 601 (637)
Q Consensus 600 ~~ 601 (637)
+-
T Consensus 102 ~~ 103 (120)
T PF12325_consen 102 RA 103 (120)
T ss_pred HH
Confidence 43
No 156
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=93.01 E-value=1.9 Score=44.44 Aligned_cols=8 Identities=25% Similarity=0.837 Sum_probs=6.0
Q ss_pred eeeCCCCC
Q 006645 55 ATVGPCNV 62 (637)
Q Consensus 55 a~~g~~~~ 62 (637)
+.+|+|..
T Consensus 15 s~~g~c~s 22 (455)
T KOG3850|consen 15 SSEGTCDS 22 (455)
T ss_pred CCCCCCCC
Confidence 56788877
No 157
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.00 E-value=2.1 Score=47.71 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRC-FKLEVDVAEL 582 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~-~~le~~~~el 582 (637)
|.+...+|+..+.+.+..+..+..+|...+..+++...+.-..+++|...|..+ .-||+++.++
T Consensus 519 Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsev 583 (739)
T PF07111_consen 519 LSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEV 583 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444555555555555555555555555555554444333 3455555443
No 158
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=92.94 E-value=5.9 Score=36.48 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=11.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 006645 522 EKEELESSLSKEKLQSIQLKQDLTEAES 549 (637)
Q Consensus 522 ~~~~le~~~~e~~~~~~~l~~~l~e~e~ 549 (637)
+.+.++.+|.+...++.....++..++.
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333333333
No 159
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=92.93 E-value=3.5 Score=42.52 Aligned_cols=99 Identities=26% Similarity=0.250 Sum_probs=55.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHH----
Q 006645 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNT-------DLYKELQSVRGQLAAEQSRCFK--LEVDVAELRQKLQ---- 587 (637)
Q Consensus 521 ~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~-------~~~~elq~~~~ql~~~q~~~~~--le~~~~el~~~lq---- 587 (637)
+--+.|...+.++-.++..|+.+-.+.|+.++ ..++|.|..+.+++.+..|-.+ ||++ ..|+++-.
T Consensus 285 elar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK-aaLrkerd~L~k 363 (442)
T PF06637_consen 285 ELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK-AALRKERDSLAK 363 (442)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33445555555566666666655555555433 4567777777777766555433 2333 33443322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 006645 588 TMETLQKELELLQRQKAASEQAALNAKRQSSGG 620 (637)
Q Consensus 588 ~~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~~g 620 (637)
++++++||+++++.+.+..--.|+.--+-++-+
T Consensus 364 eLeekkreleql~~q~~v~~saLdtCikaKsq~ 396 (442)
T PF06637_consen 364 ELEEKKRELEQLKMQLAVKTSALDTCIKAKSQP 396 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCC
Confidence 255666777777777666666665444555444
No 160
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.90 E-value=16 Score=39.59 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=78.5
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
..++++|+.+++-..+.... .........-++ +|++.....+ ..+++++|+.++....+..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~--------------g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE--------------GLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCC--------------CCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc
Confidence 47999999998777664321 111111112234 5554432211 2579999999998877643
Q ss_pred CCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEE-cCCEEEEEeCC
Q 006645 290 YGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGG 367 (637)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~-~~~~l~v~GG~ 367 (637)
. + .........-++ .|++.....+ ...+|.+|+.+..+..+...+ ......... .++.|++....
T Consensus 285 ~---~-~~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 285 H---P-AIDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred C---C-CCcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEcc
Confidence 1 1 111111122234 5554432221 357999999999888775321 111222222 34455554432
Q ss_pred CCCCCcCcEEEEECCCCeeEecc
Q 006645 368 SHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 368 ~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
. . ...++++|+.++..+.+.
T Consensus 352 ~-~--~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 352 D-G--NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred C-C--ceEEEEEECCCCCEEEcc
Confidence 2 2 235999999998887764
No 161
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.89 E-value=1.9 Score=49.13 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHhHH
Q 006645 573 FKLEVDVAELRQKLQTME 590 (637)
Q Consensus 573 ~~le~~~~el~~~lq~~q 590 (637)
+.||.++..|.+.+.+++
T Consensus 458 lnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 458 LNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 344555555554444443
No 162
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.88 E-value=15 Score=40.26 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=79.1
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeC-CEEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
..++++|+.+++-..+.... .........-+ .+|++....+ ....++.+|+.++....+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~--------------g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP--------------GINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCC--------------CCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECcc
Confidence 57999999988766553321 11111111223 4566554332 23579999999998877743
Q ss_pred CCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcC-CEEEEEeCC
Q 006645 290 YGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGG 367 (637)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~-~~l~v~GG~ 367 (637)
.. .........-++ .|++.....+ ...+|++|+.+.++..+...+. .....+...+ ++|++.+ .
T Consensus 304 ~~----~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~-~ 369 (448)
T PRK04792 304 HR----AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVN-R 369 (448)
T ss_pred CC----CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEEE-e
Confidence 21 111111122244 4544432221 2579999999999988753221 1112233334 4444443 3
Q ss_pred CCCCCcCcEEEEECCCCeeEecc
Q 006645 368 SHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 368 ~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
... ...++.+|+.++....+.
T Consensus 370 ~~g--~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 370 TNG--KFNIARQDLETGAMQVLT 390 (448)
T ss_pred cCC--ceEEEEEECCCCCeEEcc
Confidence 222 246899999988877664
No 163
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.88 E-value=2.2 Score=44.40 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHh
Q 006645 574 KLEVDVAELRQKLQT 588 (637)
Q Consensus 574 ~le~~~~el~~~lq~ 588 (637)
.|+.||..|+.+|-.
T Consensus 257 ~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554444
No 164
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.87 E-value=16 Score=39.89 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=78.2
Q ss_pred cCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcceeEEEEECCCCceEeec
Q 006645 210 LSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (637)
Q Consensus 210 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 288 (637)
...++++|+.+++-..+.... .........-++ +|++.....+ ..+++++|+.++.-..+.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~--------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt 288 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFR--------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLT 288 (433)
T ss_pred CcEEEEEECCCCCEEEeccCC--------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECc
Confidence 357999999988776664321 111111222234 5554433222 247999999998876653
Q ss_pred cCCCCCCCCCceEEEEECCE-EEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEeC
Q 006645 289 TYGKPPVSRGGQSVTLVGTS-LVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGG 366 (637)
Q Consensus 289 ~~g~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~-~~~l~v~GG 366 (637)
.. + .........-+++ |++.....+ ...+|.+|+.+.....+...+ .......... +++|++..+
T Consensus 289 ~~---~-~~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 289 NH---F-GIDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred cC---C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC
Confidence 31 1 1111111222444 444332221 247999999988888775322 2222233333 445555444
Q ss_pred CCCCCCcCcEEEEECCCCeeEecc
Q 006645 367 GSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 367 ~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
. +. -..++++|+.++....+.
T Consensus 356 ~-~~--~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 356 S-GG--QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred C-CC--ceeEEEEECCCCCeEECC
Confidence 2 21 136999999888877654
No 165
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.83 E-value=3.8 Score=43.52 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=3.9
Q ss_pred hhHHHHHHHHH
Q 006645 574 KLEVDVAELRQ 584 (637)
Q Consensus 574 ~le~~~~el~~ 584 (637)
+|......|++
T Consensus 228 eL~~~~~~L~~ 238 (420)
T COG4942 228 ELRANESRLKN 238 (420)
T ss_pred HHHhHHHHHHH
Confidence 33333333333
No 166
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=92.77 E-value=3.1 Score=44.97 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCceeee
Q 006645 582 LRQKLQTMETLQKELELLQRQKAASEQAALNAK----RQSSGGMWGW 624 (637)
Q Consensus 582 l~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~~~----r~~~~g~w~~ 624 (637)
+.+..++..++.+++..++...+.+.++..... ..+.+|-||=
T Consensus 152 ~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wGE 198 (448)
T COG1322 152 IHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWGE 198 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHH
Confidence 333444455677777777777777777774443 5789999974
No 167
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.73 E-value=1.2 Score=45.51 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHH
Q 006645 535 LQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQK 594 (637)
Q Consensus 535 ~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~ 594 (637)
-++..|+++|+++++.+.++++++.++.+.+......+..|+.++.+|+.+|.+.+++.+
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578889999999999999998888888766666667788888888888877655544
No 168
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.58 E-value=2.1 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=12.1
Q ss_pred CCCCCCCHhhhHHHHHHhcCCC-CCHHH
Q 006645 63 PKPSSWSPVEQSKWKSWQGLGN-MATTE 89 (637)
Q Consensus 63 ~~p~~~~~~~~~k~~aw~~~~~-~s~~~ 89 (637)
+-.++.|+..-.+.-+ .++ ++.+|
T Consensus 64 ~l~~~~Di~~~l~r~~---~g~~l~~~e 88 (782)
T PRK00409 64 PFEGVKDIDDALKRAE---KGGVLSGDE 88 (782)
T ss_pred CCCCCccHHHHHHHHh---CCCCCCHHH
Confidence 3345667665444333 233 56655
No 169
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.53 E-value=2.8 Score=43.48 Aligned_cols=10 Identities=40% Similarity=0.438 Sum_probs=3.8
Q ss_pred hhhHHHHHHH
Q 006645 573 FKLEVDVAEL 582 (637)
Q Consensus 573 ~~le~~~~el 582 (637)
..|+..+.++
T Consensus 240 ~~Le~~l~~l 249 (312)
T PF00038_consen 240 ASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhHHHH
Confidence 3333333333
No 170
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.50 E-value=1.3 Score=51.89 Aligned_cols=24 Identities=21% Similarity=-0.054 Sum_probs=12.8
Q ss_pred CCCCCCCHhhhHHHHHHhcCCC-CCHHH
Q 006645 63 PKPSSWSPVEQSKWKSWQGLGN-MATTE 89 (637)
Q Consensus 63 ~~p~~~~~~~~~k~~aw~~~~~-~s~~~ 89 (637)
+-.++.|+..-.+.-+ .++ ++.+|
T Consensus 61 ~l~~~~di~~~l~r~~---~g~~l~~~e 85 (771)
T TIGR01069 61 RFFGFEDIRELLKRAE---LGGIVKGLE 85 (771)
T ss_pred CcCCCccHHHHHHHHh---cCCcCChHH
Confidence 4445667765544332 344 66655
No 171
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.49 E-value=18 Score=38.96 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=62.1
Q ss_pred CCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCC
Q 006645 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETM 333 (637)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~ 333 (637)
+++.+++..... ....++++|+.++.-..+.. .+..... ....-++ .|++....++ ..+||.+|+.+.
T Consensus 200 dg~~la~~~~~~---~~~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~ 268 (417)
T TIGR02800 200 DGQKLAYVSFES---GKPEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGK 268 (417)
T ss_pred CCCEEEEEEcCC---CCcEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCC
Confidence 444444444322 23579999999887666543 1111111 1112233 5655543222 357999999998
Q ss_pred ceEEecCCCCCCCcccccEEEEE-cCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 334 TWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 334 ~W~~~~~~~~~p~~r~~h~~~~~-~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
....+..... . ....... .+.+|++.....+ ...+|.+|+.+..+..+.
T Consensus 269 ~~~~l~~~~~---~--~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 269 QLTRLTNGPG---I--DTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred CEEECCCCCC---C--CCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 8777753211 1 1111222 3444554433221 247999999888887664
No 172
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.47 E-value=2.1 Score=50.66 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006645 554 LYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQA 609 (637)
Q Consensus 554 ~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~ 609 (637)
++++..++..++.+++.+...|++++++++++|..+++..+.++...++...+.++
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~ 547 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQ 547 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33445555555555555556666666666666665554444443333333333333
No 173
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.46 E-value=2.8 Score=42.46 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.2
Q ss_pred hhhHHH
Q 006645 573 FKLEVD 578 (637)
Q Consensus 573 ~~le~~ 578 (637)
++|-+|
T Consensus 165 q~LnrE 170 (401)
T PF06785_consen 165 QTLNRE 170 (401)
T ss_pred HHHHHH
Confidence 333333
No 174
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=92.41 E-value=3 Score=41.73 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 006645 533 EKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRC 572 (637)
Q Consensus 533 ~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~ 572 (637)
..++++++++++.........++..++.++.+|...+.|.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444344443
No 175
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=92.39 E-value=1.9 Score=41.27 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHH--hhcCCCc
Q 006645 549 SQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQK------AASEQAALNA--KRQSSGG 620 (637)
Q Consensus 549 ~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~------~~~~~~~~~~--~r~~~~g 620 (637)
+.+.++|.|-+++++||.+.++...--.+|+.-+++..|++|++++..+.+-+.+ -.++..++++ |+--+.|
T Consensus 127 rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEdy~kckI~~~arK~~~nwvrm~Aaeh~hssg 206 (265)
T PF06409_consen 127 RKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAEDYYKCKIAPSARKPLDNWVRMAAAEHHHSSG 206 (265)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchHHHHHHHHHHHhccCCC
Confidence 5566677788888888888888777778889999999999999988888777653 3455556554 4444445
Q ss_pred e
Q 006645 621 M 621 (637)
Q Consensus 621 ~ 621 (637)
.
T Consensus 207 l 207 (265)
T PF06409_consen 207 L 207 (265)
T ss_pred C
Confidence 4
No 176
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.36 E-value=7.8 Score=34.60 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 555 YKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 555 ~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq 587 (637)
-+.|+.++.+++..+.....|+.+....+..|.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444444444443
No 177
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.29 E-value=2.8 Score=40.07 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=27.1
Q ss_pred hHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006645 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 513 e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
.+++..-.++..-+.+.++..+.....+.+.+.+++.++.....+++..
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666655555555555555555555555444444
No 178
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.12 E-value=3.1 Score=40.40 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006645 564 QLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQA 609 (637)
Q Consensus 564 ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~ 609 (637)
.|.+.-+|..-||.++-|.+--|.++|.|..|.+.|+++++..++|
T Consensus 141 rLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 141 RLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455556677777787778888888888999999888877765
No 179
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.08 E-value=2.2 Score=47.50 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006645 554 LYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQK 603 (637)
Q Consensus 554 ~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~ 603 (637)
+..++.+.+.++...+.+...++++++++++++..+.+.+.+++.|+++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~ 364 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDY 364 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 44455555555555555555666666666666665444444444444443
No 180
>PRK13684 Ycf48-like protein; Provisional
Probab=92.05 E-value=18 Score=37.99 Aligned_cols=172 Identities=10% Similarity=0.092 Sum_probs=83.4
Q ss_pred eEEecccCCCCCCCCcceeEEEEC-CEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccce
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs 250 (637)
+|...... ...+...+.+..++ +.+|+.|. ...+++-+-...+|..+... ..-.-+.
T Consensus 120 tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~g~------~G~i~~S~DgG~tW~~~~~~--------------~~g~~~~ 177 (334)
T PRK13684 120 NWTRIPLS--EKLPGSPYLITALGPGTAEMATN------VGAIYRTTDGGKNWEALVED--------------AAGVVRN 177 (334)
T ss_pred CCeEccCC--cCCCCCceEEEEECCCcceeeec------cceEEEECCCCCCceeCcCC--------------CcceEEE
Confidence 89987631 01222223333343 45666654 12355544456799987542 1222334
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEE-EECCCCceEeeccCCCCCCCCCceEEEEE-CCEEEEEeCCCCCCCCCCceEEE
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKV-FDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHIL 328 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~n~i~~y 328 (637)
+....+..|++.|..+. ++. .|....+|..+.. +..+.-++++.. ++.++++|... ..++
T Consensus 178 i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~ 239 (334)
T PRK13684 178 LRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG--------QIRF 239 (334)
T ss_pred EEECCCCeEEEEeCCce------EEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC--------EEEE
Confidence 44444444444443322 222 2334457988853 333344444443 56788887431 1223
Q ss_pred E-C-CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 329 D-L-ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 329 d-~-~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
. . .-.+|+.+.... .......+++++..++.+|++|... .++.-.-...+|..+.
T Consensus 240 ~s~d~G~sW~~~~~~~-~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 240 NDPDDLESWSKPIIPE-ITNGYGYLDLAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDP 296 (334)
T ss_pred ccCCCCCccccccCCc-cccccceeeEEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECC
Confidence 2 2 235898764210 0011223344445566788887642 2333333457899875
No 181
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.01 E-value=2.5 Score=53.33 Aligned_cols=16 Identities=31% Similarity=0.300 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 006645 595 ELELLQRQKAASEQAA 610 (637)
Q Consensus 595 e~~~~~~~~~~~~~~~ 610 (637)
++..+-..+..+++++
T Consensus 1007 k~~~l~k~~~kle~~l 1022 (1930)
T KOG0161|consen 1007 KAKSLNKAKAKLEQQL 1022 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444444
No 182
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.91 E-value=1.9 Score=48.62 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=21.3
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhCCCccccCccC
Q 006645 80 QGLGNMATTEAMRLFVKILEEEDPGWYSRASNS 112 (637)
Q Consensus 80 ~~~~~~s~~~a~~~yv~~~~~~~~~~~~~~~~~ 112 (637)
..++.++++---..=+..|..++|+-....+.+
T Consensus 24 ~sl~~ft~e~~v~~~~~cL~~I~p~~~~~l~~~ 56 (594)
T PF05667_consen 24 QSLKQFTTELLVEAVVRCLRVIDPSLGSSLPRS 56 (594)
T ss_pred ccHhhCCHHHHHHHHHHHHHHhCccccCCCccc
Confidence 345666666666666677888888766555544
No 183
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.88 E-value=1.9 Score=49.73 Aligned_cols=45 Identities=7% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 006645 540 LKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQ 584 (637)
Q Consensus 540 l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~ 584 (637)
+.++++++++++.+++.+++....++.+-+.+..++++++.++++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333444444444443
No 184
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=91.88 E-value=1.2 Score=46.38 Aligned_cols=8 Identities=50% Similarity=0.538 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 006645 595 ELELLQRQ 602 (637)
Q Consensus 595 e~~~~~~~ 602 (637)
|+++++.+
T Consensus 310 elE~lR~~ 317 (575)
T KOG4403|consen 310 ELEQLRVA 317 (575)
T ss_pred HHHHHHHH
Confidence 44444433
No 185
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.80 E-value=5.6 Score=40.45 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Q 006645 554 LYKELQSVRGQLAAEQSRC-FKLEVDVAEL 582 (637)
Q Consensus 554 ~~~elq~~~~ql~~~q~~~-~~le~~~~el 582 (637)
+.++.-+.+++|.++|+.. .+|+.++..|
T Consensus 118 Lr~EK~~lE~~Le~EqE~~V~kL~k~i~~L 147 (310)
T PF09755_consen 118 LRQEKVELENQLEQEQEYLVNKLQKKIERL 147 (310)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344444555544432 4444444444
No 186
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.78 E-value=3 Score=47.25 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+-+.|+.+...+++..++...++..|..+......+.++++.+|.+.+.++
T Consensus 16 ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 16 YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555555555555555555555555555555555544
No 187
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.73 E-value=1.1 Score=47.97 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006645 593 QKELELLQRQKAASEQAA 610 (637)
Q Consensus 593 ~~e~~~~~~~~~~~~~~~ 610 (637)
+.++++++.+++.+.++|
T Consensus 122 ~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 188
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.72 E-value=4 Score=36.19 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=59.4
Q ss_pred EEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEE-EC
Q 006645 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL-DL 330 (637)
Q Consensus 252 v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~y-d~ 330 (637)
+.+||-||...-. .....+.|.+||+.+.+|+.+...............+.++|+|-++.-........-+||++ |.
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 4578888887766 22456789999999999998865212234556667777899888876543322123578888 46
Q ss_pred CCCceEEecC
Q 006645 331 ETMTWDEIDA 340 (637)
Q Consensus 331 ~t~~W~~~~~ 340 (637)
.+..|.+...
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 6788997754
No 189
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.66 E-value=5.1 Score=39.04 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=43.7
Q ss_pred CchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
+-..+.|+-|++.++.+.++.++....-.-|..++.-+|++.++...+++.+..|++
T Consensus 104 rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~ 160 (330)
T KOG2991|consen 104 RLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQ 160 (330)
T ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334567778888888888888887776677778888888888888888888777653
No 190
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.65 E-value=2.2 Score=39.94 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHHh
Q 006645 573 FKLEVDVAELRQKLQT 588 (637)
Q Consensus 573 ~~le~~~~el~~~lq~ 588 (637)
.+|++++.+++.+|+.
T Consensus 119 ~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 119 EELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 191
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.63 E-value=3.2 Score=48.57 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=12.1
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHH
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKL 535 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~ 535 (637)
+.++++..|++++.++++..++.+.
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444333
No 192
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.63 E-value=4.3 Score=45.78 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~ 547 (637)
.++.|+++.+++..++.+.+.++..++.++.++
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~ 361 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQL 361 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444444333333
No 193
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.62 E-value=3.5 Score=47.13 Aligned_cols=6 Identities=17% Similarity=0.783 Sum_probs=2.6
Q ss_pred ceEEec
Q 006645 334 TWDEID 339 (637)
Q Consensus 334 ~W~~~~ 339 (637)
.|....
T Consensus 176 r~~s~t 181 (980)
T KOG0980|consen 176 RWVSLT 181 (980)
T ss_pred cccccC
Confidence 344443
No 194
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=6.1 Score=34.28 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006645 591 TLQKELELLQRQKAASEQAALNAKR 615 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~r 615 (637)
.++++.+.++++..++...+..+-.
T Consensus 88 tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555666666666666655543
No 195
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=91.51 E-value=9.2 Score=35.23 Aligned_cols=52 Identities=21% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
+...+.++++.....+.+.++..++....+++.++.+++.+++.++...+..
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~ 98 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQ 98 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777777777777777777777777777777766655543
No 196
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=91.50 E-value=7 Score=37.78 Aligned_cols=51 Identities=6% Similarity=0.115 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+...|+++...+...+.+.+....+....+.+.++.+.+..++.+++..+.
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A 128 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA 128 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777777776665543
No 197
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.48 E-value=3.9 Score=40.72 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=32.6
Q ss_pred HHhHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQS-IQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~-~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
++.++....+-..+++.++.++ +...+.+.++|..+.+.+++|..+...|.
T Consensus 321 qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lk 372 (406)
T KOG3859|consen 321 QETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLK 372 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443 44567888889999999999888877664
No 198
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.46 E-value=16 Score=36.17 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=76.9
Q ss_pred CcceeEEEECCEEEEEccc--CCCcccCcEEEEE---ccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEE
Q 006645 186 RYEHGAAVVQDKMYIYGGN--HNGRYLSDMHILD---LRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLS 260 (637)
Q Consensus 186 R~~~a~~~~~~~lyv~GG~--~~~~~~~~v~~yd---~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv 260 (637)
-.+.++.+++++||.+=-. -.+..+...+.|| ...+.|....-..- ++......+...-|+.+.+++.-|.
T Consensus 75 yHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~----~~~~~a~~~vTe~HSFa~i~~~~fA 150 (367)
T PF12217_consen 75 YHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTI----ASFTSAGVAVTELHSFATIDDNQFA 150 (367)
T ss_dssp EE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-----TT--------SEEEEEEE-SSS-EE
T ss_pred eeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccc----cccccccceeeeeeeeeEecCCcee
Confidence 3456677899999987541 1222233344555 45678876543220 0000112335567899999998889
Q ss_pred EEccCCCCC-cceeEEEEE-----CCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCc
Q 006645 261 IAGHTKDPS-EIIQVKVFD-----LQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (637)
Q Consensus 261 ~GG~~~~~~-~~~~v~~yd-----~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~ 334 (637)
+|=+.++-. ..-.+..|. +....=+.++.. .....+-.+.-.+++.||+.--.......-..+.+-+.....
T Consensus 151 ~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se--y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~ 228 (367)
T PF12217_consen 151 VGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE--YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQN 228 (367)
T ss_dssp EEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG--G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS
T ss_pred EEeccCCCCcceeeEEEecccccCCcceeeeechhh--hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCc
Confidence 997766622 111222221 111111222110 111222333445699999886433222334567777778889
Q ss_pred eEEecCCCCCCCcccccE---EEEEcCCEEEEEeC
Q 006645 335 WDEIDAVGVPPSPRSDHA---AAVHAERYLLIFGG 366 (637)
Q Consensus 335 W~~~~~~~~~p~~r~~h~---~~~~~~~~l~v~GG 366 (637)
|+.+... ....|+ .+.+ ++.|||||-
T Consensus 229 w~slrfp-----~nvHhtnlPFakv-gD~l~mFgs 257 (367)
T PF12217_consen 229 WSSLRFP-----NNVHHTNLPFAKV-GDVLYMFGS 257 (367)
T ss_dssp -EEEE-T-----T---SS---EEEE-TTEEEEEEE
T ss_pred hhhcccc-----ccccccCCCceee-CCEEEEEec
Confidence 9998632 222232 2333 678999985
No 199
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.32 E-value=29 Score=38.95 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=69.3
Q ss_pred ceeEEEECCEEEEEcccCCCcccCcEEEEEccCC--eEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccC
Q 006645 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT 265 (637)
Q Consensus 188 ~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~ 265 (637)
..+-+++++.||+... .+.++.+|..|+ .|+.-...... ..+.........+.+..+++||+.. .
T Consensus 62 ~stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~-----~~~~~~~~~~~rg~av~~~~v~v~t-~- 128 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDD-----VIPVMCCDVVNRGVALYDGKVFFGT-L- 128 (527)
T ss_pred ccCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcc-----cccccccccccccceEECCEEEEEc-C-
Confidence 3455677999999654 236999999985 58754221100 0000001111223455678888642 2
Q ss_pred CCCCcceeEEEEECCCCc--eEeeccCCCCCCC-CCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCc--eEEe
Q 006645 266 KDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVS-RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEI 338 (637)
Q Consensus 266 ~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~--W~~~ 338 (637)
...++++|..|++ |+.-.. ..... ....+-++.++.||+-..... ......|+.||..|.+ |+.-
T Consensus 129 -----dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 -----DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -----CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEecc
Confidence 2358999998876 765421 11111 111223455777766432111 1124578999998764 7654
No 200
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.30 E-value=3 Score=51.67 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG 563 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ 563 (637)
++.+..+.+++++.+......+..++.++...+.+++..+.+++..+.
T Consensus 616 l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (1201)
T PF12128_consen 616 LQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKN 663 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444455556666555566666666666555555555444444433
No 201
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.25 E-value=2.4 Score=41.95 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=42.3
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHhHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSR--CFKLEVDVAELRQKLQTMETLQ 593 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~--~~~le~~~~el~~~lq~~q~~~ 593 (637)
|+-|+..+++-+..+++.+-++..|+-||..+++.. .|.|=..++.||+-++.| +.||++-|...+-. +-+++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLALKEARkEIkQLkQvieTmrss---L~ekD 144 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQLALKEARKEIKQLKQVIETMRSS---LAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hchhh
Confidence 444565666666666666666777777776655443 345566677776544333 23333333322222 22445
Q ss_pred HHHHHH
Q 006645 594 KELELL 599 (637)
Q Consensus 594 ~e~~~~ 599 (637)
+-+|++
T Consensus 145 kGiQKY 150 (305)
T PF15290_consen 145 KGIQKY 150 (305)
T ss_pred hhHHHH
Confidence 555544
No 202
>PRK10698 phage shock protein PspA; Provisional
Probab=91.22 E-value=8.8 Score=37.66 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~ 552 (637)
.+++.+++...++...+...-....++++++.+.+....
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~ 69 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQV 69 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333344444444444333
No 203
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.22 E-value=16 Score=35.69 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=78.4
Q ss_pred CcEEEEEccCC--eEEEeeecccccCCCCCCCCCCCCcccce--EEEeCCEEEEEEccCCCCCcceeEEEEECCCCc--e
Q 006645 211 SDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHS--LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--W 284 (637)
Q Consensus 211 ~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~hs--~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W 284 (637)
..+..+|+.++ .|+.-. . ....+.. .+..++++|+..+ ...+++||+.+++ |
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~-------------~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W 60 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--G-------------PGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLW 60 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--S-------------SSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEE
T ss_pred CEEEEEECCCCCEEEEEEC--C-------------CCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEE
Confidence 35788999876 477631 1 1122222 3447889998842 3479999998876 6
Q ss_pred EeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCC--ceEE-ecCCCCCCCc-ccccEEEEEcCCE
Q 006645 285 STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDE-IDAVGVPPSP-RSDHAAAVHAERY 360 (637)
Q Consensus 285 ~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~--~W~~-~~~~~~~p~~-r~~h~~~~~~~~~ 360 (637)
+.-.. .+. ....+..++.+|+..+ .+.++.||..+. .|+. .... .+.+ +......+ .++.
T Consensus 61 ~~~~~-----~~~-~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~-~~~~ 124 (238)
T PF13360_consen 61 RFDLP-----GPI-SGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAV-DGDR 124 (238)
T ss_dssp EEECS-----SCG-GSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEE-ETTE
T ss_pred Eeecc-----ccc-cceeeecccccccccc-------eeeeEecccCCcceeeeeccccc--cccccccccCceE-ecCE
Confidence 66532 111 1224677888888762 236999997765 5884 4332 1222 22233333 3665
Q ss_pred EEEEeCCCCCCCcCcEEEEECCCCe--eEe
Q 006645 361 LLIFGGGSHAACFNDLHVLDLQTME--WSR 388 (637)
Q Consensus 361 l~v~GG~~~~~~~~dl~~~d~~t~~--W~~ 388 (637)
+|+... ...++.+|+.++. |..
T Consensus 125 ~~~~~~------~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 125 LYVGTS------SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEEET------CSEEEEEETTTTEEEEEE
T ss_pred EEEEec------cCcEEEEecCCCcEEEEe
Confidence 655543 2468999998764 665
No 204
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.19 E-value=8.3 Score=36.32 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006645 592 LQKELELLQRQKAASEQAA 610 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~ 610 (637)
+.++.++|..+...+..|+
T Consensus 121 lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 121 LKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3333344433333444333
No 205
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=2 Score=45.99 Aligned_cols=101 Identities=25% Similarity=0.280 Sum_probs=54.9
Q ss_pred ceEeeecCCCCCCcccCCCCCchhHHHHhHHHHHHHHh---hhhhHHHHHHHHHH-------HHHHHHHhhhHHHHHHHH
Q 006645 490 KIREIVVDNVDSEPLISKHPETTEHLIATLKAEKEELE---SSLSKEKLQSIQLK-------QDLTEAESQNTDLYKELQ 559 (637)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~le---~~~~e~~~~~~~l~-------~~l~e~e~~~~~~~~elq 559 (637)
.|++-..++.++..++|.....-+++.+.++-+.+++. ..+..+...+.+|+ -+|++.++++.++++.+-
T Consensus 314 ~W~QA~~dnp~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiL 393 (508)
T KOG3091|consen 314 IWRQAMKDNPPSNKLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRIL 393 (508)
T ss_pred HHHHHhhcCCCcccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444457777888887777777777665554433222 22233333333333 356666667777766654
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 560 SVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 560 ~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
.+=.+++--+.+-+.|.-.+++|+.||+-+.
T Consensus 394 Rv~ikqeilr~~G~~L~~~EE~Lr~Kldtll 424 (508)
T KOG3091|consen 394 RVMIKQEILRKRGYALTPDEEELRAKLDTLL 424 (508)
T ss_pred HHHHHHHHHhccCCcCCccHHHHHHHHHHHH
Confidence 4444433334444555555566666666543
No 206
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.99 E-value=3.2 Score=44.51 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh----HHHHHHHHHHHHHHH
Q 006645 528 SSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT----METLQKELELLQRQK 603 (637)
Q Consensus 528 ~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~----~q~~~~e~~~~~~~~ 603 (637)
.+++....++..++++|+.+..++-+...+.-....||...+.++..+--++.++.+-||. ..+++.|+++++.+-
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444455555666666666666666666666666665565555444444444444444 445666677777777
Q ss_pred HHHHHHHHHHhh
Q 006645 604 AASEQAALNAKR 615 (637)
Q Consensus 604 ~~~~~~~~~~~r 615 (637)
++..+.+-+++.
T Consensus 285 AE~m~~~~Eaee 296 (596)
T KOG4360|consen 285 AECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHH
Confidence 777777777663
No 207
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.99 E-value=28 Score=38.18 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=58.2
Q ss_pred eeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCccccc
Q 006645 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (637)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h 351 (637)
..++++|+.+++-..+.. .+..........-+..|++....++ ..+||++|+.+.+.+.+.... . ...
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~-~~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----A-IDT 309 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----C-Ccc
Confidence 579999999887666643 1211111111112345665543322 357999999999888775321 1 111
Q ss_pred EEEEEcC-CEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 352 AAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 352 ~~~~~~~-~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
..+...+ ..|++.....+ ...+|.+|+.++.+..+.
T Consensus 310 ~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred ceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEe
Confidence 2223334 44554432221 257999999999888774
No 208
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.94 E-value=15 Score=36.69 Aligned_cols=166 Identities=19% Similarity=0.152 Sum_probs=91.0
Q ss_pred CCEEEEEEccCCCCCcceeEEEEECCC-----CceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEE
Q 006645 255 ENKLLSIAGHTKDPSEIIQVKVFDLQT-----CSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (637)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t-----~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd 329 (637)
++++|++.|.... .+..|.... +.....- .+|-+-.|.+.++.+|.+|.--. -++.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 4688999887543 555553222 2222221 25666777788888998887654 267899999
Q ss_pred CCCCceE---EecCCCC---CCCcccc---cEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCC----CeeEecccCCCCC
Q 006645 330 LETMTWD---EIDAVGV---PPSPRSD---HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT----MEWSRPTQQGEIP 396 (637)
Q Consensus 330 ~~t~~W~---~~~~~~~---~p~~r~~---h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t----~~W~~l~~~~~~p 396 (637)
+.+..-. .++..+. .|-...+ .-.++-.++ |+|+-......-.--|-.+|+.+ .+|.. ..+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~ 169 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP 169 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence 9988655 3432211 1111111 223343445 66664433221111244555544 35653 234
Q ss_pred CCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCCcccEEEEeCCCCcccccccC
Q 006645 397 TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSSKMI 458 (637)
Q Consensus 397 ~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~~~~~v~~~d~~~~~~~~~~~~ 458 (637)
.+..+.+-++. | .||++...+.....-.+.||+.++.-....++
T Consensus 170 k~~~~naFmvC----------------G--vLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 170 KRSAGNAFMVC----------------G--VLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred chhhcceeeEe----------------e--EEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 44444444333 2 78988876654455668899887755444443
No 209
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=90.86 E-value=6.2 Score=35.59 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 591 TLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
+++++++.++++..+..+++.+..
T Consensus 112 ~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 112 KLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 210
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=90.85 E-value=8.1 Score=33.23 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHHHHh
Q 006645 573 FKLEVDVAELRQKLQT 588 (637)
Q Consensus 573 ~~le~~~~el~~~lq~ 588 (637)
..++.++...++.+..
T Consensus 69 ~~~~~~~~~~r~~l~~ 84 (123)
T PF02050_consen 69 ERLEQEVEQAREELQE 84 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 211
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.81 E-value=2.7 Score=31.88 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=7.1
Q ss_pred HhhhhhhHHHHHHHHHH
Q 006645 569 QSRCFKLEVDVAELRQK 585 (637)
Q Consensus 569 q~~~~~le~~~~el~~~ 585 (637)
+.|...|++++..|+++
T Consensus 38 E~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 38 EKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 212
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.79 E-value=6.4 Score=40.01 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006645 592 LQKELELLQRQKAASEQAAL 611 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~ 611 (637)
|.+++.++..+++.++..|.
T Consensus 183 L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 55555555555555555543
No 213
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=90.77 E-value=5.3 Score=39.21 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=34.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 006645 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLE 576 (637)
Q Consensus 523 ~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le 576 (637)
.+-++..+++++.+++++..+|......+..+...++.++.+|...+.|...||
T Consensus 107 Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 107 EKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667777777777666666777777777666666666654444
No 214
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.70 E-value=2.8 Score=49.02 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006645 572 CFKLEVDVAELRQKLQTMETLQKELELLQRQKAA 605 (637)
Q Consensus 572 ~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~ 605 (637)
...|+++++++++++.++-+.++++.+++++...
T Consensus 348 ~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~ 381 (726)
T PRK09841 348 RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEA 381 (726)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666655433
No 215
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.66 E-value=3.5 Score=46.72 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=31.3
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+..|+.+.+.+..+++......+.|..-+.+.+.++.++++.++..+.+.
T Consensus 89 ~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666555556666555666777777777666665544
No 216
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=90.63 E-value=13 Score=33.76 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=14.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006645 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKE 557 (637)
Q Consensus 524 ~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~e 557 (637)
+.....+.+.....+..+.+|..++....+..++
T Consensus 19 e~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~ 52 (146)
T PRK07720 19 EKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQA 52 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433333
No 217
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.57 E-value=4.1 Score=44.10 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 006645 536 QSIQLKQDLTE 546 (637)
Q Consensus 536 ~~~~l~~~l~e 546 (637)
+++.++.++..
T Consensus 159 ~i~~~~~~l~~ 169 (423)
T TIGR01843 159 ELAGLQAQLQA 169 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 218
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.50 E-value=3.2 Score=46.15 Aligned_cols=11 Identities=0% Similarity=-0.031 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 006645 600 QRQKAASEQAA 610 (637)
Q Consensus 600 ~~~~~~~~~~~ 610 (637)
+.+...++++.
T Consensus 354 ~~el~~L~Re~ 364 (498)
T TIGR03007 354 EAELTQLNRDY 364 (498)
T ss_pred HHHHHHHHHHH
Confidence 33444555554
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.48 E-value=30 Score=37.69 Aligned_cols=146 Identities=10% Similarity=0.027 Sum_probs=75.4
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
..++++|+.++....+.... .........-++ +|++....+ ...+++.+|+.++....+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--------------GMTFAPRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--------------CcccCcEECCCCCEEEEEEecC----CCceEEEEECCCCceEEccC
Confidence 67999999998887764321 111111222244 555443322 23579999999888776643
Q ss_pred CCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEeCCC
Q 006645 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGS 368 (637)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~-~~~l~v~GG~~ 368 (637)
. +. ........-+++-++|.... .+ ...||++|+.+.....+... ..... ...... ++.|++.. ..
T Consensus 288 ~---~~-~~~~~~~spDG~~i~f~s~~-~g--~~~Iy~~d~~g~~~~~lt~~----~~~~~-~~~~SpdG~~ia~~~-~~ 354 (435)
T PRK05137 288 S---PA-IDTSPSYSPDGSQIVFESDR-SG--SPQLYVMNADGSNPRRISFG----GGRYS-TPVWSPRGDLIAFTK-QG 354 (435)
T ss_pred C---CC-ccCceeEcCCCCEEEEEECC-CC--CCeEEEEECCCCCeEEeecC----CCccc-CeEECCCCCEEEEEE-cC
Confidence 1 11 11111222244433343321 11 35799999988877777522 11121 222323 44444443 22
Q ss_pred CCCCcCcEEEEECCCCeeEec
Q 006645 369 HAACFNDLHVLDLQTMEWSRP 389 (637)
Q Consensus 369 ~~~~~~dl~~~d~~t~~W~~l 389 (637)
.. ...++++|+.+.....+
T Consensus 355 ~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 355 GG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred CC--ceEEEEEECCCCceEec
Confidence 21 24689999877665554
No 220
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.48 E-value=4.7 Score=46.21 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhhcCCCceeeeccCCCCCCCcC
Q 006645 589 METLQKELELLQRQKAASEQAA--LNAKRQSSGGMWGWLAGAPPTQNAY 635 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~--~~~~r~~~~g~w~~~~~~~~~~~~~ 635 (637)
.+.|+.|++-+.++..+++-.| +.++-+.+ .|+.|.+++|
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeek-------G~~~~~~ss~ 368 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEK-------GSDGQAASSY 368 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCcccchH
Confidence 4556666666666666666655 33332222 2334666666
No 221
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=90.40 E-value=4.1 Score=37.51 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 006645 539 QLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 539 ~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
.++.+++.++.+++.+.++++..
T Consensus 47 ~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 47 ALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 222
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.38 E-value=4.8 Score=49.88 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 006645 541 KQDLTEAESQNTDLYKELQ 559 (637)
Q Consensus 541 ~~~l~e~e~~~~~~~~elq 559 (637)
..++.+....+.+.+.+++
T Consensus 634 ~~~~~~~~~~~~~~~~~~~ 652 (1201)
T PF12128_consen 634 NKKIEELKREITQAEQELK 652 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 223
>PRK11519 tyrosine kinase; Provisional
Probab=90.33 E-value=2.5 Score=49.38 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006645 573 FKLEVDVAELRQKLQTMETLQKELELLQRQK 603 (637)
Q Consensus 573 ~~le~~~~el~~~lq~~q~~~~e~~~~~~~~ 603 (637)
..|++++++++.++..+.+.++++++++++.
T Consensus 349 ~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~ 379 (719)
T PRK11519 349 KALEDEKAKLNGRVTAMPKTQQEIVRLTRDV 379 (719)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555666666555554
No 224
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.30 E-value=7.5 Score=41.31 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 006645 597 ELLQRQKAASEQAA 610 (637)
Q Consensus 597 ~~~~~~~~~~~~~~ 610 (637)
+.|.+++...+|++
T Consensus 481 dlLkrEKe~~Eqef 494 (527)
T PF15066_consen 481 DLLKREKETREQEF 494 (527)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 225
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.28 E-value=15 Score=39.09 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=33.6
Q ss_pred cceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEE--E--CCEEEEEeCCCC
Q 006645 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL--V--GTSLVIFGGEDA 317 (637)
Q Consensus 248 ~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~--~~~lyv~GG~~~ 317 (637)
-++.+..+.-.|++||.-. .++|++.+.|+.--.+- .+.+...+. + ++..++.||.++
T Consensus 84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCCc
Confidence 3556666767777777322 25888888777643331 122222222 2 568888888754
No 226
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.16 E-value=2.5 Score=49.44 Aligned_cols=10 Identities=10% Similarity=-0.114 Sum_probs=5.1
Q ss_pred CCceeeeccC
Q 006645 618 SGGMWGWLAG 627 (637)
Q Consensus 618 ~~g~w~~~~~ 627 (637)
..+.|.=|+-
T Consensus 403 ~~~~~rIid~ 412 (726)
T PRK09841 403 AIGNVRIIDP 412 (726)
T ss_pred CCCceeeccC
Confidence 3455665543
No 227
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=90.11 E-value=1.8 Score=39.64 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=9.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHh
Q 006645 568 EQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 568 ~q~~~~~le~~~~el~~~lq~ 588 (637)
++.+..+||.-...+++++|+
T Consensus 143 ER~EaeQLQsLR~avRqElqE 163 (179)
T PF14723_consen 143 EREEAEQLQSLRSAVRQELQE 163 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333335555555555544444
No 228
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.09 E-value=13 Score=35.07 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 555 YKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 555 ~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
+.+|..........+.+|.+|++++.-+..-|..
T Consensus 94 E~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~ 127 (205)
T KOG1003|consen 94 EGELERAEERAEAAESQSEELEEDLRILDSNLKS 127 (205)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 3333333333334455566666666555544444
No 229
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.06 E-value=11 Score=36.87 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=4.2
Q ss_pred hcCCCcee
Q 006645 615 RQSSGGMW 622 (637)
Q Consensus 615 r~~~~g~w 622 (637)
+..+++.|
T Consensus 154 ~~~~~~s~ 161 (225)
T COG1842 154 RSLGGGSS 161 (225)
T ss_pred HHhcCCCc
Confidence 44455555
No 230
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=90.05 E-value=15 Score=33.44 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~ 556 (637)
++...+...+.....+....+..+..+.+|+.++....+..+
T Consensus 10 vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~ 51 (147)
T PRK05689 10 LLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQ 51 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555444444433
No 231
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.02 E-value=16 Score=35.91 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhhhHHHHHH
Q 006645 519 LKAEKEELESSLSKEKLQS 537 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~ 537 (637)
|....++.+..+.+..+.+
T Consensus 29 l~Q~ird~~~~l~~ar~~~ 47 (225)
T COG1842 29 LEQAIRDMESELAKARQAL 47 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333
No 232
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.91 E-value=0.093 Score=60.99 Aligned_cols=86 Identities=24% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHH---HHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLY---KELQSVRGQLA---AEQSRCFKLEVDVAELRQKLQTMETLQKELEL 598 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~---~elq~~~~ql~---~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~ 598 (637)
+++..+.+.+.+.+.+..++.+++.+.+++. ++.+.++.++. .+-.+..++|.++..+++||++++.+.++++.
T Consensus 257 ~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~ 336 (713)
T PF05622_consen 257 RLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKE 336 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444333 22333333332 33446678899999999999998888888877
Q ss_pred HHHHHHHHHHHH
Q 006645 599 LQRQKAASEQAA 610 (637)
Q Consensus 599 ~~~~~~~~~~~~ 610 (637)
|+++-..+-++.
T Consensus 337 Lee~N~~l~e~~ 348 (713)
T PF05622_consen 337 LEEDNAVLLETK 348 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 776544433333
No 233
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.88 E-value=27 Score=36.25 Aligned_cols=157 Identities=11% Similarity=0.014 Sum_probs=70.7
Q ss_pred CCEEEEEcccCCCcccCcEEEEEcc-CCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcce
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLR-SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEII 272 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~ 272 (637)
+..||+.+. . .+.+..|++. ++++..+.... .+ ....|.+..-++ .||+.. +. .+
T Consensus 46 ~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~-----------~~-~~p~~i~~~~~g~~l~v~~-~~-----~~ 102 (330)
T PRK11028 46 KRHLYVGVR-P----EFRVLSYRIADDGALTFAAESP-----------LP-GSPTHISTDHQGRFLFSAS-YN-----AN 102 (330)
T ss_pred CCEEEEEEC-C----CCcEEEEEECCCCceEEeeeec-----------CC-CCceEEEECCCCCEEEEEE-cC-----CC
Confidence 456777543 1 2567778776 45665543321 01 111232223244 566553 32 24
Q ss_pred eEEEEECCCCc-e-EeeccCCCCCCCCCceEEEEE-C-CEEEEEeCCCCCCCCCCceEEEECCCCc-eEEecC-CCCCCC
Q 006645 273 QVKVFDLQTCS-W-STLKTYGKPPVSRGGQSVTLV-G-TSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDA-VGVPPS 346 (637)
Q Consensus 273 ~v~~yd~~t~~-W-~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~n~i~~yd~~t~~-W~~~~~-~~~~p~ 346 (637)
.+.+|++.++. . ..+.. .+.....|.++.. + ..+|+..- ..+.|.+||+.+.. ...... ....+.
T Consensus 103 ~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 103 CVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred eEEEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCC
Confidence 67788876421 1 11111 1211223444443 3 35666442 14679999987632 211000 000111
Q ss_pred cccccEEEEEc-CCEEEEEeCCCCCCCcCcEEEEECC--CCeeEe
Q 006645 347 PRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQ--TMEWSR 388 (637)
Q Consensus 347 ~r~~h~~~~~~-~~~l~v~GG~~~~~~~~dl~~~d~~--t~~W~~ 388 (637)
...-+.+++.. +.++|+.... .+.+.+||+. +...+.
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEE
Confidence 11122344433 4567776432 2567777775 445443
No 234
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.87 E-value=13 Score=35.11 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~ 555 (637)
|..+...++..+.-++....+|..++.++..+++.++
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 235
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=89.87 E-value=6.1 Score=44.39 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=19.0
Q ss_pred CCHhhhHHHHHHhcCCCCCHHHHHHHHHHH
Q 006645 68 WSPVEQSKWKSWQGLGNMATTEAMRLFVKI 97 (637)
Q Consensus 68 ~~~~~~~k~~aw~~~~~~s~~~a~~~yv~~ 97 (637)
-|+..-.+.+.=.++-|+|-+|-+-.|--+
T Consensus 312 dD~~dF~rl~~Al~~~Glsd~Ekl~i~s~v 341 (1259)
T KOG0163|consen 312 DDYQDFHRLEKALKLLGLSDTEKLFIWSTV 341 (1259)
T ss_pred ccHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 344445555555667788888877776543
No 236
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.82 E-value=4.9 Score=46.01 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=7.0
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 006645 546 EAESQNTDLYKELQSVRG 563 (637)
Q Consensus 546 e~e~~~~~~~~elq~~~~ 563 (637)
++++++.++..++.++.+
T Consensus 463 ~~~~~~~~L~d~le~~~~ 480 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQR 480 (980)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 237
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.69 E-value=4.8 Score=45.60 Aligned_cols=17 Identities=24% Similarity=0.558 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHhHH
Q 006645 574 KLEVDVAELRQKLQTME 590 (637)
Q Consensus 574 ~le~~~~el~~~lq~~q 590 (637)
.++.+..++.+++..++
T Consensus 380 el~e~leel~e~leeie 396 (569)
T PRK04778 380 ELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 238
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=89.67 E-value=9.4 Score=36.23 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006645 532 KEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAE 568 (637)
Q Consensus 532 e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~ 568 (637)
-+++.+++|++++.|.+..+++....|+..+..+..-
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA 100 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAA 100 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666665554433
No 239
>PRK11519 tyrosine kinase; Provisional
Probab=89.66 E-value=3.6 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHH
Q 006645 573 FKLEVDVAELRQKLQTMETLQKELE 597 (637)
Q Consensus 573 ~~le~~~~el~~~lq~~q~~~~e~~ 597 (637)
.+++.++.++.++.+++.+++|+.+
T Consensus 356 ~~l~~~~~~lp~~e~~~~~L~Re~~ 380 (719)
T PRK11519 356 AKLNGRVTAMPKTQQEIVRLTRDVE 380 (719)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 240
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.62 E-value=39 Score=37.90 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=63.4
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCc--eEeeccCC--CCC---CCCCceEEEEECCEEEEEeCCCCCCCCCC
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYG--KPP---VSRGGQSVTLVGTSLVIFGGEDAKRSLLN 323 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g--~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~n 323 (637)
-+..++.||+.... ..++++|..|++ |+.-.... ..+ ......+.++.+++||+.. . ..
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~------dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-L------DA 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-C------CC
Confidence 34568899986432 258999988764 87653211 001 0011223455677777632 1 24
Q ss_pred ceEEEECCCCc--eEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe--eEe
Q 006645 324 DLHILDLETMT--WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSR 388 (637)
Q Consensus 324 ~i~~yd~~t~~--W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~--W~~ 388 (637)
.++.+|..|.+ |+.-.. .........+.-++.++.||+.........-..|+.||..+++ |+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 68999998764 765421 1111111112222336655553222112223468999998764 764
No 241
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.59 E-value=4.7 Score=42.74 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 006645 519 LKAEKEELE 527 (637)
Q Consensus 519 l~~~~~~le 527 (637)
|+.+.+.+.
T Consensus 276 lk~~n~~l~ 284 (622)
T COG5185 276 LKTQNDNLY 284 (622)
T ss_pred HHHHHHHHH
Confidence 333333333
No 242
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.52 E-value=7.3 Score=44.06 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006645 604 AASEQAA 610 (637)
Q Consensus 604 ~~~~~~~ 610 (637)
+++++|+
T Consensus 389 aerqeQi 395 (1265)
T KOG0976|consen 389 AERQEQI 395 (1265)
T ss_pred HHHHHHH
Confidence 3344444
No 243
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=89.44 E-value=11 Score=32.79 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhhhH
Q 006645 519 LKAEKEELESSLSK 532 (637)
Q Consensus 519 l~~~~~~le~~~~e 532 (637)
+....+..+..+..
T Consensus 12 l~~~~~~~~~~~~~ 25 (127)
T smart00502 12 LRKKAAELEDALKQ 25 (127)
T ss_pred HHHhhHHHHHHHHH
Confidence 33333333333333
No 244
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.37 E-value=7.9 Score=40.56 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=27.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
.+..++...+-+...++..++++|..++++++|+..+....
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666777788888888888887776665543
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.36 E-value=7.9 Score=42.28 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=43.3
Q ss_pred CCCCCceEEEEE--CCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCC
Q 006645 294 PVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA 371 (637)
Q Consensus 294 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~ 371 (637)
..|+.+.-++.. .-.||+.|- .+++|+||++.+.|-.+-.+. .+-..+..+. .-+.|+.+||.+
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P~~~~---~~~lN~v~in-~~hgLla~Gt~~--- 196 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNPFETD---SGELNVVSIN-EEHGLLACGTED--- 196 (703)
T ss_pred ecCcCCccccccCCCccEEEeec-------CcceEEEEccccccccccccc---cccceeeeec-CccceEEecccC---
Confidence 345555555543 224565542 468999999999996543221 1111221111 234599999854
Q ss_pred CcCcEEEEECCCCe
Q 006645 372 CFNDLHVLDLQTME 385 (637)
Q Consensus 372 ~~~dl~~~d~~t~~ 385 (637)
+.|..+|+.+++
T Consensus 197 --g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 --GVVEFWDPRDKS 208 (703)
T ss_pred --ceEEEecchhhh
Confidence 347788887654
No 246
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=12 Score=32.47 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Q 006645 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (637)
Q Consensus 520 ~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~ 555 (637)
-.+..++++++...-.+.+++..+|.+.+.-+.+++
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555444433
No 247
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.34 E-value=4.1 Score=38.83 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+++..+++.+.+++.+.+...|.+++++++..+.+.+..|.+.+..+.+-++...+|.-++..|+.+..+++
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 444555666666777777777777777777777777777777776666656666666666766766665544
No 248
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.32 E-value=8.2 Score=45.00 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=19.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 006645 547 AESQNTDLYKELQSVRGQLAAEQSRCFKLEVDV 579 (637)
Q Consensus 547 ~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~ 579 (637)
+++++.+++++++...+.+++...++.+-+.+.
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777666555444333333
No 249
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=89.31 E-value=21 Score=34.15 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=55.6
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCc--eEeeccC-CCCCCCCCceEEEEE--CCEEEEEeCCCCCCCCCCce
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDL 325 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~-g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~n~i 325 (637)
++...+.+|+|-|. .+|.|+..... -..+... +..|.+ .. ++... ++++|+|-| +..
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECC--------CEE
Confidence 44456899999774 46777654111 1112111 012221 22 23232 378999966 347
Q ss_pred EEEECCCCceEEecCC---CCCCCcccccEEEEEc-CCEEEEEeCCCCCCCcCcEEEEECCCCee
Q 006645 326 HILDLETMTWDEIDAV---GVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (637)
Q Consensus 326 ~~yd~~t~~W~~~~~~---~~~p~~r~~h~~~~~~-~~~l~v~GG~~~~~~~~dl~~~d~~t~~W 386 (637)
|+|+..+..+..+... +-++.+..-.++.... ++++|+|.|. ..|.||..+++.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v 131 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD-------KYWRYDEKTQKM 131 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC-------EEEEEeCCCccc
Confidence 7887654322111111 1111112122333333 6789999883 578998765543
No 250
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=89.26 E-value=17 Score=34.36 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+...++++...+...+.+.+....+..+.+.+.+..+.+..+|.+......
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777767777777777777777777766665554
No 251
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.21 E-value=12 Score=33.11 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=60.7
Q ss_pred EECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcce
Q 006645 193 VVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (637)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~ 272 (637)
.++|.||...-. .....+.+.+||+.+.+|+.+... ............+.++|+|-++.-........-
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P----------~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~ 71 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLP----------EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSI 71 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEee----------eeeccccCccEEEEeCCeEEEEEecCCCCcceE
Confidence 467888887664 334456799999999999988652 012456677788899999998876544323346
Q ss_pred eEEEE-ECCCCceEeecc
Q 006645 273 QVKVF-DLQTCSWSTLKT 289 (637)
Q Consensus 273 ~v~~y-d~~t~~W~~~~~ 289 (637)
++|++ |..+..|++...
T Consensus 72 ~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 72 DIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEEeeccccceEEEEEE
Confidence 78888 466788998744
No 252
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.14 E-value=7.5 Score=43.99 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 006645 581 ELRQKLQT 588 (637)
Q Consensus 581 el~~~lq~ 588 (637)
++++++.+
T Consensus 184 q~~tkl~e 191 (1265)
T KOG0976|consen 184 EFQTKLAE 191 (1265)
T ss_pred HHHHHHHH
Confidence 34444444
No 253
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=89.13 E-value=15 Score=36.95 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=27.8
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~ 550 (637)
..+.|...+++.+-|+.--+++-.+++.|-+-+.|+|+-
T Consensus 12 L~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEa 50 (351)
T PF07058_consen 12 LMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEA 50 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777787788877777777777777777766653
No 254
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.10 E-value=8.6 Score=40.83 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHh
Q 006645 574 KLEVDVAELRQKLQT 588 (637)
Q Consensus 574 ~le~~~~el~~~lq~ 588 (637)
.++.+++.|++++++
T Consensus 246 ~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 246 SLQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 255
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.08 E-value=17 Score=35.59 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=21.7
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKE 557 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~e 557 (637)
+.|..+++...+.+..+........++++++.+.+....+.+.+
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555554444455555555555544444433
No 256
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=89.05 E-value=8.9 Score=35.76 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 006645 553 DLYKELQSVRGQLAAEQSRCFKLEVDV 579 (637)
Q Consensus 553 ~~~~elq~~~~ql~~~q~~~~~le~~~ 579 (637)
+..++-+++..+|.+.+.||.-||+++
T Consensus 54 e~~~q~~dl~~qL~aAEtRCslLEKQL 80 (178)
T PF14073_consen 54 ELSKQNQDLSSQLSAAETRCSLLEKQL 80 (178)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555444444
No 257
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.94 E-value=37 Score=36.54 Aligned_cols=184 Identities=11% Similarity=0.122 Sum_probs=85.3
Q ss_pred eEEecccCCCCCCCCcceeEEEEC-CEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCC-----CCCCCCCCC
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTE-----SPSPALLTP 245 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~-----~~~~~~p~~ 245 (637)
+|+..+..-.+|.. .+....++ +.++++|.. ..+++-+-...+|..+.......... ......+..
T Consensus 167 tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~ 238 (398)
T PLN00033 167 TWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYT 238 (398)
T ss_pred CceECccccCCCCC--ceEEEEECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceec
Confidence 99988752122322 33344454 568888741 23555554557898762211000000 000000001
Q ss_pred cccceEEEe-CCEEEEEEccCCCCCcceeEEE-EECCCCceEeeccCCCCCCCCCceEEEE-ECCEEEEEeCCCCCCCCC
Q 006645 246 CAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKV-FDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLL 322 (637)
Q Consensus 246 r~~hs~v~~-~~~lyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~ 322 (637)
-..+.+... ++.++++|-.. .++. .|.-...|..+.. |.++.-.++.. .++.+++.|..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~~------- 300 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGGLWLLTRG------- 300 (398)
T ss_pred cceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEecC----CCccceeeeeEcCCCCEEEEeCC-------
Confidence 111222222 44566666432 1222 2333334888854 33333333333 36788887743
Q ss_pred CceEEEECCCC-----ceEEecCCCCCCCccc-ccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEeccc
Q 006645 323 NDLHILDLETM-----TWDEIDAVGVPPSPRS-DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (637)
Q Consensus 323 n~i~~yd~~t~-----~W~~~~~~~~~p~~r~-~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~ 391 (637)
..++.-+.... .|..+.. +..+. -.++....++.++++|... -++.-...-.+|+....
T Consensus 301 G~l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 301 GGLYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDKG 365 (398)
T ss_pred ceEEEecCCCCcccccceeeccc----CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEccc
Confidence 12333333333 3444431 22222 2334455577899888742 24555556779998753
No 258
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.83 E-value=7.4 Score=43.97 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLS---KEKLQSIQLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~---e~~~~~~~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
+..|+.+.+.+++.+. +...+...++.++.+.+..+.+....+.+.
T Consensus 308 i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~ 356 (562)
T PHA02562 308 LKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITL 356 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 233333444445555554444444444433
No 259
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=88.77 E-value=19 Score=33.04 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+...|+++.+.++.++.+.+...+...+-+.+.+..+.+..++.++.-.+.
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A 79 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEES 79 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888777888888888877777765543
No 260
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=88.73 E-value=4.6 Score=40.01 Aligned_cols=44 Identities=30% Similarity=0.469 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HhhhhhhHHHHH
Q 006645 537 SIQLKQDLTEAESQNTDLYKELQSVRGQLAAE-----QSRCFKLEVDVA 580 (637)
Q Consensus 537 ~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~-----q~~~~~le~~~~ 580 (637)
+.-|+.+|.|.+.++++.+.|+.+.+.||..= ++.|-..|.+++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLA 118 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLA 118 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666422 334555555553
No 261
>PRK04922 tolB translocation protein TolB; Provisional
Probab=88.70 E-value=40 Score=36.67 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=56.5
Q ss_pred ceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCccc
Q 006645 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (637)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~ 349 (637)
...++++|+.+++-..+.. .+.... .....-++ +|++....++ ..+|+++|+.+.....+... + ..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~---~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~--~~ 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVAS---FRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F--GI 293 (433)
T ss_pred CcEEEEEECCCCCEEEecc---CCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C--CC
Confidence 3578999999888766643 121111 11112234 5554433222 25799999998887666422 1 11
Q ss_pred ccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 350 ~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
........++.-++|.....+ ...+|.+|+.+.....+.
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERLT 332 (433)
T ss_pred ccceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEee
Confidence 122333334443444322111 247999999888887764
No 262
>PRK14011 prefoldin subunit alpha; Provisional
Probab=88.69 E-value=18 Score=32.75 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006645 589 METLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~ 610 (637)
++++.++++.++++++..-+++
T Consensus 111 i~~~~~~~~~l~~~L~~k~~~~ 132 (144)
T PRK14011 111 IEELNKEITKLRKELEKRAQAI 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444444
No 263
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.68 E-value=2.7 Score=47.58 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006645 589 METLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~ 610 (637)
++++++++++++++...+.++|
T Consensus 348 le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444
No 264
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.66 E-value=5.6 Score=45.90 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 006645 538 IQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDV 579 (637)
Q Consensus 538 ~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~ 579 (637)
+.+.+++.+.+.++.+++.++...+.++.+.++....+++++
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333333333
No 265
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=88.65 E-value=21 Score=33.51 Aligned_cols=52 Identities=8% Similarity=0.173 Sum_probs=37.8
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
+...+.++++.+...+.+.+...++....+.+.+.++.+.+++.+....+..
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~ 94 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAK 94 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777787777777777777788888887777777666543
No 266
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.59 E-value=17 Score=33.58 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=20.0
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~ 555 (637)
.+..++.-++++-.-......+.+.++++|.+...++.+.-
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I 47 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVI 47 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555555544433
No 267
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=88.55 E-value=8 Score=41.15 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 006645 596 LELLQRQKAASE 607 (637)
Q Consensus 596 ~~~~~~~~~~~~ 607 (637)
++..|.+...+|
T Consensus 307 ~Es~qtRisklE 318 (395)
T PF10267_consen 307 MESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHH
Confidence 334444455555
No 268
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=88.54 E-value=33 Score=35.54 Aligned_cols=146 Identities=13% Similarity=0.148 Sum_probs=70.1
Q ss_pred EEEEEcccCCCcccCcEEEEEccC-CeEEEeeecccccCCCCCCCCCCCCcccceEEEe--CCEEEEEEccCCCCCccee
Q 006645 197 KMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQ 273 (637)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~--~~~lyv~GG~~~~~~~~~~ 273 (637)
++|+..+.. +.+..||+.+ .++..+.... .....+.++.- +..||+.+. . .+.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~-------------~~~~~~~l~~spd~~~lyv~~~-~-----~~~ 58 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVD-------------VPGQVQPMVISPDKRHLYVGVR-P-----EFR 58 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEe-------------cCCCCccEEECCCCCEEEEEEC-C-----CCc
Confidence 577775432 4688888864 5676654431 11111122222 345666443 2 245
Q ss_pred EEEEECC-CCceEeeccCCCCCCCCCceEEEEE-CC-EEEEEeCCCCCCCCCCceEEEECCCCc--eEEecCCCCCCCcc
Q 006645 274 VKVFDLQ-TCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVGVPPSPR 348 (637)
Q Consensus 274 v~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~--W~~~~~~~~~p~~r 348 (637)
+..|++. ++.+..+.. .+.+..-+.++.. ++ .||+.. +. .+.+.+|+++++. ...+... +...
T Consensus 59 i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~---~~~~ 126 (330)
T PRK11028 59 VLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQII---EGLE 126 (330)
T ss_pred EEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeec---cCCC
Confidence 7677775 456655432 1111111122222 34 466553 21 3568888876431 1122111 1222
Q ss_pred cccEEEEEcC-CEEEEEeCCCCCCCcCcEEEEECCC
Q 006645 349 SDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQT 383 (637)
Q Consensus 349 ~~h~~~~~~~-~~l~v~GG~~~~~~~~dl~~~d~~t 383 (637)
..|++++..+ +++|+..-. .+.|.+||+.+
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~ 157 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSD 157 (330)
T ss_pred cccEeEeCCCCCEEEEeeCC-----CCEEEEEEECC
Confidence 3455555544 456665432 24689999876
No 269
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.52 E-value=2.6 Score=37.93 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=10.6
Q ss_pred HhhhhhhHHHHHHHHHHHHh
Q 006645 569 QSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 569 q~~~~~le~~~~el~~~lq~ 588 (637)
++++..|.+|+++|+.+|.+
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555566665555543
No 270
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=88.49 E-value=14 Score=34.79 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+...+.++++.+...+.+.+...++..+.+++.+.++++.+++.++...+.
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A 93 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREG 93 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777888888777777777777788888887777777766554
No 271
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.39 E-value=11 Score=44.64 Aligned_cols=11 Identities=18% Similarity=-0.001 Sum_probs=5.4
Q ss_pred eEeeccCCCCC
Q 006645 284 WSTLKTYGKPP 294 (637)
Q Consensus 284 W~~~~~~g~~p 294 (637)
|...+..|-.|
T Consensus 155 g~l~~~aGIIP 165 (1041)
T KOG0243|consen 155 GELPSEAGIIP 165 (1041)
T ss_pred CCCCccCCcch
Confidence 55555544444
No 272
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.33 E-value=29 Score=34.67 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=103.4
Q ss_pred ccceEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEcc-----CCeEEEeeecccccCCCCCCCCCC
Q 006645 169 VYDQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR-----SWAWSKIQAKAVAESTESPSPALL 243 (637)
Q Consensus 169 ~~~~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-----t~~W~~~~~~~~~~~~~~~~~~~p 243 (637)
.+..|-+-+. + .-++++|++.|..+. .++.|... .+.....- .+|
T Consensus 17 ~~GaWmrD~~----~---------~~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~-------------~Lp 66 (250)
T PF02191_consen 17 KFGAWMRDPS----P---------SDSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTY-------------KLP 66 (250)
T ss_pred ceeEEEeCCC----C---------CCCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEE-------------EEe
Confidence 3568887652 1 124789999886544 44444321 22222221 235
Q ss_pred CCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceE---eeccCCC---CCCCCCceE---EEEECCEEEEEeC
Q 006645 244 TPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS---TLKTYGK---PPVSRGGQS---VTLVGTSLVIFGG 314 (637)
Q Consensus 244 ~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~g~---~p~~r~~~~---~~~~~~~lyv~GG 314 (637)
.+-.|-+.++++|.||.--. .++.|..||+.+..-. .++..+- .|-...+++ .++-.+-|+++-.
T Consensus 67 ~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYa 140 (250)
T PF02191_consen 67 YPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYA 140 (250)
T ss_pred ceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEe
Confidence 56667778889999998754 3568999999987754 4432221 122222222 2333445666654
Q ss_pred CCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCC
Q 006645 315 EDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGE 394 (637)
Q Consensus 315 ~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~ 394 (637)
...... .--|-.+|+.+..-...-.+ ..+.+..+.+.++. +.||++...+... ..=.+.||+.+++=..+.. .
T Consensus 141 t~~~~g-~ivvskld~~tL~v~~tw~T-~~~k~~~~naFmvC--GvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--~ 213 (250)
T PF02191_consen 141 TEDNNG-NIVVSKLDPETLSVEQTWNT-SYPKRSAGNAFMVC--GVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--P 213 (250)
T ss_pred cCCCCC-cEEEEeeCcccCceEEEEEe-ccCchhhcceeeEe--eEEEEEEECCCCC-cEEEEEEECCCCceeceee--e
Confidence 433221 12355667766543222211 12444444433332 5688887654332 2335899999876665432 3
Q ss_pred CCCCCcccEEEEEC
Q 006645 395 IPTPRAGHAGVTIG 408 (637)
Q Consensus 395 ~p~~R~~hs~~~~~ 408 (637)
.+.+-..++++..+
T Consensus 214 f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 214 FPNPYGNISMLSYN 227 (250)
T ss_pred eccccCceEeeeEC
Confidence 33343445555444
No 273
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.29 E-value=14 Score=37.02 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=72.8
Q ss_pred EEE-eCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEE
Q 006645 251 LIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (637)
Q Consensus 251 ~v~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd 329 (637)
... .++.||.--|..+ .+.+..||+.|++-..... +|...++=+++.++++||..-=. .+..++||
T Consensus 50 L~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~---l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd 116 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVP---LPPRYFGEGITILGDKLYQLTWK------EGTGFVYD 116 (264)
T ss_dssp EEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------SSEEEEEE
T ss_pred EEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEE---CCccccceeEEEECCEEEEEEec------CCeEEEEc
Confidence 444 5789998888754 4689999999998665544 67777888899999999987543 45689999
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe
Q 006645 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (637)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~ 385 (637)
+.+. +.+... +.+..+-++|.. +..|++.-|. +.++.+|+.+..
T Consensus 117 ~~tl--~~~~~~---~y~~EGWGLt~d-g~~Li~SDGS------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 117 PNTL--KKIGTF---PYPGEGWGLTSD-GKRLIMSDGS------SRLYFLDPETFK 160 (264)
T ss_dssp TTTT--EEEEEE---E-SSS--EEEEC-SSCEEEE-SS------SEEEEE-TTT-S
T ss_pred cccc--eEEEEE---ecCCcceEEEcC-CCEEEEECCc------cceEEECCcccc
Confidence 9864 444322 233456677754 6668888774 568999998654
No 274
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.29 E-value=6.9 Score=46.33 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 006645 577 VDVAELRQKLQT 588 (637)
Q Consensus 577 ~~~~el~~~lq~ 588 (637)
+++.++.+++++
T Consensus 865 ~~ie~l~kE~e~ 876 (1293)
T KOG0996|consen 865 EQIEELKKEVEE 876 (1293)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 275
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.28 E-value=11 Score=38.75 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=51.6
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQK 594 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~ 594 (637)
-++.|+....++++.-++..-.+.+|.-+-..+..+..-+...|.+.+..+.+.++.+. ++..++.++-.....+..
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLRE 154 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34556777888888888766666665544444444444455555555555544443332 223333333334455666
Q ss_pred HHHHHHHHHHHHHHHH
Q 006645 595 ELELLQRQKAASEQAA 610 (637)
Q Consensus 595 e~~~~~~~~~~~~~~~ 610 (637)
++.+++.++.++++-+
T Consensus 155 e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 155 ELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555544
No 276
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=88.20 E-value=30 Score=34.60 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEe-C-CEEEEEEccCCCCCcce
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E-NKLLSIAGHTKDPSEII 272 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~-~-~~lyv~GG~~~~~~~~~ 272 (637)
+..+|+.++. .+.+..||+.+.+....-+.. ..+ ..++.. + +.+|+.++.+ .
T Consensus 42 g~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~------------~~~---~~~~~~~~g~~l~~~~~~~------~ 95 (300)
T TIGR03866 42 GKLLYVCASD-----SDTIQVIDLATGEVIGTLPSG------------PDP---ELFALHPNGKILYIANEDD------N 95 (300)
T ss_pred CCEEEEEECC-----CCeEEEEECCCCcEEEeccCC------------CCc---cEEEECCCCCEEEEEcCCC------C
Confidence 3457777652 246889999887654321110 111 112222 3 4566655432 3
Q ss_pred eEEEEECCCCceEeeccCCCCCCCCCceEEEE-ECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCccccc
Q 006645 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (637)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h 351 (637)
.+.+||+.+..-...-. ......++.. -++.+++++..+ .+.++.||+.+..-......+. +. .
T Consensus 96 ~l~~~d~~~~~~~~~~~-----~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~----~~-~ 160 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIP-----VGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTYEIVDNVLVDQ----RP-R 160 (300)
T ss_pred eEEEEECCCCeEEeEee-----CCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCCCCeEEEEEEcCC----Cc-c
Confidence 68899998764322211 1111122222 256666666532 1346677877654322111111 11 1
Q ss_pred EEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCee
Q 006645 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (637)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W 386 (637)
+++...++..+++++... ..+.+||+.+...
T Consensus 161 ~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 233333444454554322 3588999987654
No 277
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=88.20 E-value=20 Score=34.64 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH----HHHHHH-HHHHHHHHHHHHHHH
Q 006645 537 SIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME----TLQKEL-ELLQRQKAASEQAAL 611 (637)
Q Consensus 537 ~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q----~~~~e~-~~~~~~~~~~~~~~~ 611 (637)
+..|+.+|-+.+.....+.++|+..+.- +..-.+.+.+++.|+.++..++ ...+++ .+..+++..+++++.
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~----~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~ 124 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQELQALKEF----RRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEAS 124 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444221 1111234455555555555533 111122 244556777777763
Q ss_pred H
Q 006645 612 N 612 (637)
Q Consensus 612 ~ 612 (637)
+
T Consensus 125 e 125 (206)
T PF14988_consen 125 E 125 (206)
T ss_pred H
Confidence 3
No 278
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=88.16 E-value=18 Score=34.95 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
...+.++++..+..+.+.+...++.++.+.+.++++++...+.++...+..
T Consensus 74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~ 124 (205)
T PRK06231 74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQAN 124 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777888887777777777777788888877777777666543
No 279
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=88.16 E-value=3 Score=38.58 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 573 FKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 573 ~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
.+|+.++.+|..+++.+++.+++...++..-..++.+|+..+
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777776554
No 280
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=88.15 E-value=19 Score=32.24 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=16.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006645 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (637)
Q Consensus 522 ~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~ 556 (637)
..+.....+.+.....+..+.+|.++.....+..+
T Consensus 14 ~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~ 48 (141)
T TIGR02473 14 EEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQ 48 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455544444444444444444444333
No 281
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.12 E-value=13 Score=39.29 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006645 558 LQSVRGQLAAEQSRCFKLEVDVAELRQK 585 (637)
Q Consensus 558 lq~~~~ql~~~q~~~~~le~~~~el~~~ 585 (637)
.+..+.+|.+.++++.+...-+.++.+.
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333344444444444444444333333
No 282
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.11 E-value=7.9 Score=42.54 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006645 595 ELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 595 e~~~~~~~~~~~~~~~~~~~ 614 (637)
++.+.+.++...+.++..++
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 283
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.11 E-value=6.1 Score=36.95 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=14.3
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e 548 (637)
+..+..+..++++++.+.+.+...|..+|..+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444333
No 284
>PRK00178 tolB translocation protein TolB; Provisional
Probab=88.11 E-value=43 Score=36.30 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=56.6
Q ss_pred eeEEEEECCCCceEeeccCCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccc
Q 006645 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (637)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (637)
..++++|+.++.-..+... +.. .......-++ +|++....++ ..+||++|+.+.....+... + ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~---~g~-~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~--~~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF---EGL-NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P--AID 289 (430)
T ss_pred CEEEEEECCCCCEEEccCC---CCC-cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C--CCc
Confidence 4799999999887766431 111 1111111233 4554332221 25799999999988877532 1 111
Q ss_pred cEEEEEcC-CEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 351 HAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 351 h~~~~~~~-~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
.......+ +.|++.....+ ...+|.+|+.++.+..+.
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 22223333 44554432211 247999999988887764
No 285
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.10 E-value=10 Score=44.01 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006645 592 LQKELELLQRQKAASEQAA 610 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~ 610 (637)
++++++.+..++...++++
T Consensus 397 Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 397 LQKKIENLEEQLREKDRQL 415 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444
No 286
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=88.08 E-value=6.6 Score=40.57 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 006645 539 QLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKL 575 (637)
Q Consensus 539 ~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~l 575 (637)
.|...|++.-++..+++++..+.++-|++.|+-+.+-
T Consensus 289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~ 325 (442)
T PF06637_consen 289 SLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKA 325 (442)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677777666666665555544333
No 287
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.01 E-value=18 Score=31.73 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHhhh
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD---LYKELQSVRGQLAAEQSRC 572 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~---~~~elq~~~~ql~~~q~~~ 572 (637)
++.+...++.++...+.+...+.++|-....+..+ ..+++...+.++++-+.|+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444333333322 2233444444444444444
No 288
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.96 E-value=1.9 Score=45.52 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHH
Q 006645 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQK 594 (637)
Q Consensus 527 e~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~ 594 (637)
+..+++.+.++...+.+|++++..+++++.++...+.+++.......+|+.++...+.+|+..+.|-.
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~ 287 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLIS 287 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHh
Confidence 33344444444444444444455555555555555555444444445555555555555555444444
No 289
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=87.94 E-value=31 Score=34.57 Aligned_cols=208 Identities=15% Similarity=0.209 Sum_probs=97.7
Q ss_pred ceEEecccCCCCC--CCCcceeEEEE--CCEEEEEc--ccCCCcccCcE--EEEEcc-CCeEEEeeecccccCCCCCCCC
Q 006645 171 DQWIAPPISGQRP--KARYEHGAAVV--QDKMYIYG--GNHNGRYLSDM--HILDLR-SWAWSKIQAKAVAESTESPSPA 241 (637)
Q Consensus 171 ~~W~~~~~~g~~p--~~R~~~a~~~~--~~~lyv~G--G~~~~~~~~~v--~~yd~~-t~~W~~~~~~~~~~~~~~~~~~ 241 (637)
.+|......-..+ ..+....+.+. +++|++|- +.......... +....+ ..+|+......... ...
T Consensus 30 ~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~-----~~~ 104 (275)
T PF13088_consen 30 KTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGW-----FGN 104 (275)
T ss_dssp TEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHC-----CCS
T ss_pred CeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcccccccc-----ccc
Confidence 3899765422233 33444444443 78888886 22221111111 244444 36899876432110 001
Q ss_pred CCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCC-CceEeeccCCCCCCCCCceEEEE-E-CCEEEEEeCCCCC
Q 006645 242 LLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT-CSWSTLKTYGKPPVSRGGQSVTL-V-GTSLVIFGGEDAK 318 (637)
Q Consensus 242 ~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~-~-~~~lyv~GG~~~~ 318 (637)
...+..+.....-++.+++.. +.........+..|..+. .+|....+.. +.......+.+ . ++.|+++--.. .
T Consensus 105 ~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~ 180 (275)
T PF13088_consen 105 FSGPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-G 180 (275)
T ss_dssp CEECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-S
T ss_pred eeccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-C
Confidence 111122222344478888772 211112233444455554 5599886621 22233333333 3 56888876442 1
Q ss_pred CCCCCceEEEECC-CCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 319 RSLLNDLHILDLE-TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 319 ~~~~n~i~~yd~~-t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
.. .-.+.+..+ -.+|+.+... ..|.+.....++...++.++++.........-.+++-.-...+|..+.
T Consensus 181 ~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~ 250 (275)
T PF13088_consen 181 ND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPK 250 (275)
T ss_dssp ST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEE
T ss_pred CC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccE
Confidence 11 223333333 3579987533 235555555555556667777776322221223333333478898754
No 290
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.88 E-value=16 Score=35.06 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 536 QSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 536 ~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
.+.+-+++++.+++.+.+.+-|++.+..-++++..+...+++++..+|++|+-
T Consensus 52 ~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEv 104 (246)
T KOG4657|consen 52 ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEV 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333333444555666555554443
No 291
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.84 E-value=16 Score=37.88 Aligned_cols=7 Identities=29% Similarity=0.230 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 006645 603 KAASEQA 609 (637)
Q Consensus 603 ~~~~~~~ 609 (637)
|-.++.+
T Consensus 292 K~~Ld~E 298 (312)
T PF00038_consen 292 KLALDAE 298 (312)
T ss_dssp HHHHHHH
T ss_pred HHhHHHH
Confidence 3333333
No 292
>PRK11281 hypothetical protein; Provisional
Probab=87.83 E-value=4.9 Score=48.64 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
++.++++.++++.+...+...++.+.++.+.++.+..+++++.++++
T Consensus 133 ~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 133 TLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444445555555555555554
No 293
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=87.77 E-value=24 Score=33.06 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=36.2
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
...+.+++......+.+.+....+..+.+.+.+.++++.+++.++...+..
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 92 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAK 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777777777777777777777777776665543
No 294
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=87.68 E-value=16 Score=34.66 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
...+.++++.....+.+.+....+..+.+.+.+.++++.+++.++.....
T Consensus 50 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A 99 (184)
T CHL00019 50 SDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNG 99 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777777777777777777777766665544
No 295
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.62 E-value=16 Score=35.74 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=28.4
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
..|.....+.++.+.+.+..+......-...++++.+.+++....+.+.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666555555555555666666666666555543
No 296
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=87.61 E-value=9.9 Score=41.64 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhhhH
Q 006645 536 QSIQLKQDLTEAESQNT 552 (637)
Q Consensus 536 ~~~~l~~~l~e~e~~~~ 552 (637)
++.+|.|++.++..++.
T Consensus 422 ~~~~L~qqlD~kd~~~n 438 (607)
T KOG0240|consen 422 RIESLYQQLDQKDDQIN 438 (607)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 297
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=87.61 E-value=8.2 Score=36.57 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQ 539 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~ 539 (637)
...|+.++.+|+..+.+.+.+...
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334666666777776666655554
No 298
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.56 E-value=8.2 Score=42.21 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHhHHHHHHHHhhhhhHHH-------HHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEK-------LQSIQLKQDLTEAESQNTDLYKE-LQSVRGQLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~-------~~~~~l~~~l~e~e~~~~~~~~e-lq~~~~ql~~~q~~~~~le~~~~el~~~lq 587 (637)
++.|+.+..+++.++.+.. -.+..++.++++.++++.+.-+. ........+..+.+...++..+.++++++.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433 23345555555555544322111 112222222333344455555555555555
Q ss_pred hHHHHHHHHHHHHHH
Q 006645 588 TMETLQKELELLQRQ 602 (637)
Q Consensus 588 ~~q~~~~e~~~~~~~ 602 (637)
.+...+.+...|+++
T Consensus 336 ~l~~~~~~~~~L~r~ 350 (444)
T TIGR03017 336 ELNRQRDEMSVLQRD 350 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 544444444444444
No 299
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.52 E-value=26 Score=34.29 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=15.4
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~ 552 (637)
+++.++....+....+........++++++.+.+...+
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~ 69 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVA 69 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333333333333344444444444443
No 300
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.50 E-value=9.8 Score=44.14 Aligned_cols=48 Identities=38% Similarity=0.428 Sum_probs=33.5
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
..+..++.++..++..+.+.+.+++.++-+|.+.+..+.+++.+|...
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ 643 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA 643 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777777777777777777777777777666543
No 301
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=87.50 E-value=7.4 Score=33.79 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=17.9
Q ss_pred HhhhhhhHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHH
Q 006645 569 QSRCFKLEVDVAELRQKLQTMET--LQKELELLQRQKAASEQAAL 611 (637)
Q Consensus 569 q~~~~~le~~~~el~~~lq~~q~--~~~e~~~~~~~~~~~~~~~~ 611 (637)
+.++.+.+.+|++.++.|++.+. ...++...++.+.+..++|.
T Consensus 69 q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 69 QQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 33444444455544444444221 11234444444444444443
No 302
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=87.49 E-value=22 Score=32.24 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=11.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQN 551 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~ 551 (637)
++..+++..+.+++.|++++..+....
T Consensus 10 ~l~a~lq~l~~qie~L~~~i~~l~~~~ 36 (145)
T COG1730 10 ELAAQLQILQSQIESLQAQIAALNAAI 36 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 303
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.41 E-value=6.9 Score=37.29 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHHH
Q 006645 573 FKLEVDVAELRQKLQ 587 (637)
Q Consensus 573 ~~le~~~~el~~~lq 587 (637)
.+|+.++.+|+.+|+
T Consensus 113 ~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 113 EELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 304
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.35 E-value=8.3 Score=45.45 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=19.8
Q ss_pred HhhhhhhHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006645 569 QSRCFKLEVDV----AELRQKLQTMETLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 569 q~~~~~le~~~----~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~ 610 (637)
|+|..+|..+- .+.+.+|+.+++|+.+...-++++..++.+|
T Consensus 1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 44444444433 3445555666666544444344444444444
No 305
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=87.26 E-value=16 Score=39.01 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=7.3
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 006645 580 AELRQKLQTMETLQKELE 597 (637)
Q Consensus 580 ~el~~~lq~~q~~~~e~~ 597 (637)
+++++-++..|.+-.++|
T Consensus 301 Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 301 RDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444443333343
No 306
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.25 E-value=6.4 Score=31.23 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=5.8
Q ss_pred HHHHHhhhHHHHHHH
Q 006645 544 LTEAESQNTDLYKEL 558 (637)
Q Consensus 544 l~e~e~~~~~~~~el 558 (637)
|.++..+++++..|.
T Consensus 7 l~EKDe~Ia~L~eEG 21 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEG 21 (74)
T ss_pred HHhHHHHHHHHHHHH
Confidence 333333333333333
No 307
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.22 E-value=6.7 Score=41.35 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhhHHH
Q 006645 538 IQLKQDLTEAESQNTDL 554 (637)
Q Consensus 538 ~~l~~~l~e~e~~~~~~ 554 (637)
..|+.+|...+-++++.
T Consensus 18 ~~m~~~L~~~~~~L~~k 34 (344)
T PF12777_consen 18 EEMQEELEEKQPELEEK 34 (344)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 308
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=87.21 E-value=20 Score=33.50 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
...+.++.+.+.+.+.+.+....+.++.+.+.++++.+.+++.++...+.
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A 97 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETA 97 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777766665544
No 309
>PRK12705 hypothetical protein; Provisional
Probab=87.21 E-value=11 Score=41.75 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 536 QSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 536 ~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+.++.+..+.++++++......|...+.+|
T Consensus 78 ~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l 107 (508)
T PRK12705 78 ELQREEERLVQKEEQLDARAEKLDNLENQL 107 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 310
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=87.20 E-value=18 Score=33.89 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
...|.++++.+...+.+.+....+..+.+.+.+.++++..++.++...+..
T Consensus 45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~ 95 (174)
T PRK07352 45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777778888887777777777777788888877777777666543
No 311
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.08 E-value=25 Score=37.26 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=3.5
Q ss_pred hhhhHHHHH
Q 006645 572 CFKLEVDVA 580 (637)
Q Consensus 572 ~~~le~~~~ 580 (637)
...|+++++
T Consensus 251 i~~l~~~i~ 259 (362)
T TIGR01010 251 IKSLRKQID 259 (362)
T ss_pred HHHHHHHHH
Confidence 333443333
No 312
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.98 E-value=21 Score=35.98 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA-------AEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~-------~~q~~~~~le~~~~el~~~lq~~q 590 (637)
|+.+.-.....|+++....+..+..|.+.+.++.++++-.|.-+.++. .-++|..+||.+---|+|||...+
T Consensus 163 Le~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 163 LEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556665555556666666666655555555544444332 224566666666666777776644
No 313
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=86.95 E-value=5.3 Score=40.02 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 589 METLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
..+.+++++++.+++..++++|.-+.
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaK 86 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAK 86 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55678889999999999999985544
No 314
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.94 E-value=12 Score=29.49 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Q 006645 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (637)
Q Consensus 524 ~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~ 555 (637)
.+|+......-..+..|+.++++.+++...+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35555555555566666666665555544444
No 315
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.91 E-value=3.3 Score=45.60 Aligned_cols=83 Identities=24% Similarity=0.273 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006645 528 SSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRC-FKLEVDVAELRQKLQTMETLQKELELLQRQKAAS 606 (637)
Q Consensus 528 ~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~-~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~ 606 (637)
+++..+...+..|..+|.++|....-++++++.++.||..+++.. ..|..+.+++.+--++.+++..|+|.|.--+..+
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~L 375 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISL 375 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHH
Confidence 444445555556777888888888888888888888887766544 3344444444444444455555666555555555
Q ss_pred HHHH
Q 006645 607 EQAA 610 (637)
Q Consensus 607 ~~~~ 610 (637)
.-++
T Consensus 376 d~EI 379 (546)
T KOG0977|consen 376 DAEI 379 (546)
T ss_pred HhHH
Confidence 5444
No 316
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=86.88 E-value=15 Score=35.45 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 006645 577 VDVAELRQKLQT 588 (637)
Q Consensus 577 ~~~~el~~~lq~ 588 (637)
.++..++++|+.
T Consensus 61 k~~~~l~~eLq~ 72 (206)
T PF14988_consen 61 KEQAKLQQELQA 72 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 317
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.85 E-value=49 Score=35.60 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=74.4
Q ss_pred ECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCccee
Q 006645 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (637)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~ 273 (637)
.++.++++|+-+. .+-.+|..+..- .....+ ..-.-|++ ++...++.|++-|||++.
T Consensus 121 ~d~t~l~s~sDd~-----v~k~~d~s~a~v-~~~l~~----------htDYVR~g-~~~~~~~hivvtGsYDg~------ 177 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK-----VVKYWDLSTAYV-QAELSG----------HTDYVRCG-DISPANDHIVVTGSYDGK------ 177 (487)
T ss_pred cCCeEEEecCCCc-----eEEEEEcCCcEE-EEEecC----------CcceeEee-ccccCCCeEEEecCCCce------
Confidence 5788999988321 233445555442 222221 00122222 344557899999999875
Q ss_pred EEEEECCCC-ceEeeccCCCCCCCCCceEEEEE--CCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccc
Q 006645 274 VKVFDLQTC-SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (637)
Q Consensus 274 v~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (637)
|-.||+.+. .|..--..| .| ... ++.+ +..|...|| |.+-++|+.+.. ..+..+..
T Consensus 178 vrl~DtR~~~~~v~elnhg-~p--Ve~--vl~lpsgs~iasAgG--------n~vkVWDl~~G~--------qll~~~~~ 236 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNHG-CP--VES--VLALPSGSLIASAGG--------NSVKVWDLTTGG--------QLLTSMFN 236 (487)
T ss_pred EEEEEeccCCceeEEecCC-Cc--eee--EEEcCCCCEEEEcCC--------CeEEEEEecCCc--------eehhhhhc
Confidence 778888776 444332211 22 111 2222 345555555 456777765432 12222332
Q ss_pred c-----EEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEec
Q 006645 351 H-----AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (637)
Q Consensus 351 h-----~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l 389 (637)
| |++...++.-++.||.++ .+-+||. ..|+.+
T Consensus 237 H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~--t~~Kvv 273 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGSLDR-----HVKVFDT--TNYKVV 273 (487)
T ss_pred ccceEEEEEeecCCceEeeccccc-----ceEEEEc--cceEEE
Confidence 3 233334556677777653 3678883 445544
No 318
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.78 E-value=6.9 Score=32.91 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
-|...+-+.+.....|..+|.+++..+..+++|+++.
T Consensus 16 vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 16 VLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSL 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444443
No 319
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.75 E-value=20 Score=39.48 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEV 577 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~ 577 (637)
..-.|.+-..+.++++.+++.+...|+.-+.++.....++.+.+..++-+|.....++..+.+
T Consensus 419 V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 419 VKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466667777888888888888888877777777777777777777777666665544333
No 320
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.73 E-value=17 Score=35.58 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=25.6
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
..|....+++++.+.+.+..+.+....-...++++.+.+.+.+..+.+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544444555555555555555443
No 321
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=86.68 E-value=21 Score=31.30 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=18.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQS 560 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~ 560 (637)
.++..+..+..+..++...+...+..+...+++|+.
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~ 46 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQREEELEKKEQELEE 46 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555544443
No 322
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=86.67 E-value=13 Score=38.25 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006645 534 KLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAE 568 (637)
Q Consensus 534 ~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~ 568 (637)
..++.++..++..++.++.++++++...+..+..|
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E 168 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCE 168 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555556666666666666665555544433
No 323
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.60 E-value=8.7 Score=48.18 Aligned_cols=6 Identities=0% Similarity=-0.291 Sum_probs=2.6
Q ss_pred cccCCC
Q 006645 469 VQNNTN 474 (637)
Q Consensus 469 ~~~~~~ 474 (637)
.||.|.
T Consensus 679 ~C~LC~ 684 (1311)
T TIGR00606 679 CCPVCQ 684 (1311)
T ss_pred cCCCCC
Confidence 344444
No 324
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.58 E-value=4 Score=48.07 Aligned_cols=13 Identities=23% Similarity=0.013 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 006645 598 LLQRQKAASEQAA 610 (637)
Q Consensus 598 ~~~~~~~~~~~~~ 610 (637)
..+.+..+++++.
T Consensus 373 ~~~~e~~~L~Re~ 385 (754)
T TIGR01005 373 EQQVDLDALQRDA 385 (754)
T ss_pred HhHHHHHHHHHHH
Confidence 3344445555544
No 325
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.56 E-value=14 Score=43.73 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006645 553 DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQK 585 (637)
Q Consensus 553 ~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~ 585 (637)
.+.++++..+.+|+..-..+..++++.++++.+
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333444444443333
No 326
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.50 E-value=18 Score=36.22 Aligned_cols=12 Identities=8% Similarity=-0.180 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHh
Q 006645 603 KAASEQAALNAK 614 (637)
Q Consensus 603 ~~~~~~~~~~~~ 614 (637)
+.-++.|+++..
T Consensus 248 l~yLe~qle~~~ 259 (267)
T PF10234_consen 248 LDYLEHQLEEYN 259 (267)
T ss_pred HHHHHHHHHHHH
Confidence 455666664443
No 327
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.48 E-value=15 Score=42.73 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 006645 592 LQKELELLQRQKAASEQAALNAKRQ 616 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~~~~r~ 616 (637)
.++++..++.....++.++.+.+++
T Consensus 390 ~e~ki~~Lq~kie~Lee~l~ekd~q 414 (775)
T PF10174_consen 390 KERKINVLQKKIENLEEQLREKDRQ 414 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 328
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=86.37 E-value=23 Score=32.45 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
...+.++...+...+.+.+....+.+..+.+.+.++.+..++.++...+.
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a 79 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQA 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777777777777777776665554
No 329
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=86.25 E-value=25 Score=31.59 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLA 566 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~ 566 (637)
...+.++.+.+...+.+.+....+..+.+.+.+.++.+..++.++...+..
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~ 81 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777777777777788888877777776666543
No 330
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=86.20 E-value=14 Score=38.34 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006645 592 LQKELELLQRQKAASEQAALNAKRQS 617 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~~~~r~~ 617 (637)
++.|+|=|.++.+.+..+|+.+.|-+
T Consensus 517 KEsEiQYLKqEissLkDELQtalrDK 542 (593)
T KOG4807|consen 517 KESEIQYLKQEISSLKDELQTALRDK 542 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666667777777776666544
No 331
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=86.12 E-value=12 Score=40.37 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------HHHHhhhhhhHHHHHHHHHHHHhHHHH----HHHHHHHHH
Q 006645 535 LQSIQLKQDLTEAESQNTDLYKELQSVRGQL---------AAEQSRCFKLEVDVAELRQKLQTMETL----QKELELLQR 601 (637)
Q Consensus 535 ~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql---------~~~q~~~~~le~~~~el~~~lq~~q~~----~~e~~~~~~ 601 (637)
.++.-.++++.+.+.++.+..+.|..+|++- +..-.-..+||.++.+++.+|..++.- .-++..++.
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~ 321 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Confidence 3444556677777777777777777776632 222234467888888888887776542 336778888
Q ss_pred HHHHHHHHHHHHhhcC
Q 006645 602 QKAASEQAALNAKRQS 617 (637)
Q Consensus 602 ~~~~~~~~~~~~~r~~ 617 (637)
+...+++|+.+.....
T Consensus 322 rI~aLe~QIa~er~kl 337 (434)
T PRK15178 322 KIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888889886554333
No 332
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=86.12 E-value=24 Score=35.27 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
...+.++++.+...+.+.+...++.++.+++.++++++.+++.++...+
T Consensus 31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 79 (250)
T PRK14474 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777766666666666666666666666665555443
No 333
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.10 E-value=8.6 Score=36.63 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=6.0
Q ss_pred HHhhhhhHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLK 541 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~ 541 (637)
.++.++.+.+..+..++
T Consensus 73 ~l~~~~~~~~~~i~~l~ 89 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELE 89 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 334
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=86.08 E-value=20 Score=30.89 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006645 592 LQKELELLQRQKAASEQAAL 611 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~ 611 (637)
++++++.++.+....+++++
T Consensus 86 lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 86 LQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 335
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=86.00 E-value=16 Score=41.12 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 006645 539 QLKQDLTEAESQNTDLYKELQSV 561 (637)
Q Consensus 539 ~l~~~l~e~e~~~~~~~~elq~~ 561 (637)
+|.+.+++....+.++..+|...
T Consensus 525 qLE~~Lq~~qe~la~l~~QL~~A 547 (739)
T PF07111_consen 525 QLEQELQEKQESLAELEEQLEAA 547 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 336
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.92 E-value=15 Score=36.45 Aligned_cols=27 Identities=33% Similarity=0.272 Sum_probs=11.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQN 551 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~ 551 (637)
+++.++.....+.++.+-+|+-.|..+
T Consensus 22 elE~QldkLkKE~qQrQfQleSlEAaL 48 (307)
T PF10481_consen 22 ELEQQLDKLKKERQQRQFQLESLEAAL 48 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444444444444444444444444333
No 337
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.75 E-value=8.2 Score=45.96 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=17.9
Q ss_pred eeEEEECCEEEEEccc-CCCcccCcEEEEEccCCeE
Q 006645 189 HGAAVVQDKMYIYGGN-HNGRYLSDMHILDLRSWAW 223 (637)
Q Consensus 189 ~a~~~~~~~lyv~GG~-~~~~~~~~v~~yd~~t~~W 223 (637)
|-+.-.+++||++--+ .||..++-+-.||..--.|
T Consensus 141 hyAFQD~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ 176 (1317)
T KOG0612|consen 141 HYAFQDERYLYLVMDYMPGGDLLTLLSKFDRLPEDW 176 (1317)
T ss_pred HHHhcCccceEEEEecccCchHHHHHhhcCCChHHH
Confidence 3334456778877554 2344445455566333333
No 338
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.63 E-value=19 Score=32.38 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=15.5
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e 548 (637)
.++.|.+..+.+++.+...+..+..+...+.+.+
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~ 40 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELD 40 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 339
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.53 E-value=59 Score=35.33 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=76.7
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
..++.+|+.+++-..+.... ...+.....-++ +|++.....+ ...++.+|+.++....+..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~--------------~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP--------------RHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred cEEEEEECCCCCeEEccCCC--------------CCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC
Confidence 56899999887766553321 111111222244 5655533221 2369999999988777643
Q ss_pred CCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCC
Q 006645 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (637)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~ 369 (637)
. +. ........-+++.++|..... + ...+|.+|+.+..-..+...+ .. ....+...++..+++.+...
T Consensus 285 ~---~~-~~~~~~wSPDG~~I~f~s~~~-g--~~~Iy~~d~~~g~~~~lt~~~----~~-~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 285 G---RS-NNTEPTWFPDSQNLAYTSDQA-G--RPQVYKVNINGGAPQRITWEG----SQ-NQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred C---CC-CcCceEECCCCCEEEEEeCCC-C--CceEEEEECCCCCeEEeecCC----CC-ccCEEECCCCCEEEEEEccC
Confidence 1 11 111111122444444433211 1 347999999888777664221 11 11233333443444433322
Q ss_pred CCCcCcEEEEECCCCeeEecc
Q 006645 370 AACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 370 ~~~~~dl~~~d~~t~~W~~l~ 390 (637)
. ...++++|+.++.+..+.
T Consensus 353 g--~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 353 G--QQHIAKQDLATGGVQVLT 371 (429)
T ss_pred C--CceEEEEECCCCCeEEeC
Confidence 2 246899999999888764
No 340
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.52 E-value=5.1 Score=43.45 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=9.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Q 006645 522 EKEELESSLSKEKLQSIQLKQDLTE 546 (637)
Q Consensus 522 ~~~~le~~~~e~~~~~~~l~~~l~e 546 (637)
|..++|.+.++.+.+++++.+++++
T Consensus 94 EL~ele~krqel~seI~~~n~kiEe 118 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEE 118 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333333333333333333
No 341
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=85.51 E-value=1.8 Score=51.73 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 006645 88 TEAMRLFVKILEEE 101 (637)
Q Consensus 88 ~~a~~~yv~~~~~~ 101 (637)
+|-++.|..+++++
T Consensus 1643 eenkraYmnL~KKl 1656 (2220)
T KOG3598|consen 1643 EENKRAYMNLMKKL 1656 (2220)
T ss_pred hhhHHHHHHHHHHH
Confidence 44444555444444
No 342
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=85.48 E-value=24 Score=33.41 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
...|.++++.+...+.+.+...++-.+.+.+.+.++++.+++.++...+.
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A 102 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAA 102 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777777777777777777777777766554
No 343
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.46 E-value=37 Score=32.85 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 006645 553 DLYKELQSVRGQLAAEQSRC 572 (637)
Q Consensus 553 ~~~~elq~~~~ql~~~q~~~ 572 (637)
.+.+.++++...+..++.|+
T Consensus 115 ~Lkk~~~ey~~~l~~~eqry 134 (207)
T PF05010_consen 115 TLKKCIEEYEERLKKEEQRY 134 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444444
No 344
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.42 E-value=10 Score=41.71 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHhH
Q 006645 535 LQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQS-------RCFKLEVDVAELRQKLQTM 589 (637)
Q Consensus 535 ~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~-------~~~~le~~~~el~~~lq~~ 589 (637)
.+++...++|.++|.-+++...+|...+..||++-- +-..|..++.+|+=++.-+
T Consensus 132 eqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltal 193 (861)
T KOG1899|consen 132 EQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTAL 193 (861)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHH
Confidence 333333344444444444444555555555544421 1123445555555444443
No 345
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.37 E-value=4.2 Score=41.08 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 006645 549 SQNTDLYKELQSVRGQL 565 (637)
Q Consensus 549 ~~~~~~~~elq~~~~ql 565 (637)
.++.++++|+.+.+.++
T Consensus 61 ~ql~~lq~ev~~LrG~~ 77 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQI 77 (263)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 33334444444444444
No 346
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=85.35 E-value=26 Score=31.13 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=6.1
Q ss_pred HHHHHhhhhhHHHHHH
Q 006645 522 EKEELESSLSKEKLQS 537 (637)
Q Consensus 522 ~~~~le~~~~e~~~~~ 537 (637)
+.+.|.++...++.+.
T Consensus 31 e~~~L~~ee~~~~~Q~ 46 (147)
T PF02090_consen 31 EEQKLDAEEEAIEEQR 46 (147)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333443333333333
No 347
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=85.29 E-value=7.7 Score=43.49 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLT 545 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~ 545 (637)
.+..|+.+.++++.++++.+.+...++.++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666655555555554443
No 348
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.24 E-value=32 Score=34.74 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 591 TLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
.++..+-++|.+=.=+.|||.+|.
T Consensus 218 s~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555554443
No 349
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=85.16 E-value=18 Score=38.01 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=6.4
Q ss_pred HHHHHHHhhhHHHHHHH
Q 006645 542 QDLTEAESQNTDLYKEL 558 (637)
Q Consensus 542 ~~l~e~e~~~~~~~~el 558 (637)
.++...+.+++..++++
T Consensus 121 ~~i~~a~~~l~~a~~~~ 137 (346)
T PRK10476 121 EQVERARANAKLATRTL 137 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 350
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=85.05 E-value=25 Score=30.50 Aligned_cols=6 Identities=0% Similarity=-0.551 Sum_probs=2.1
Q ss_pred HHHHHH
Q 006645 533 EKLQSI 538 (637)
Q Consensus 533 ~~~~~~ 538 (637)
.+....
T Consensus 19 ~~~~~~ 24 (127)
T smart00502 19 LEDALK 24 (127)
T ss_pred HHHHHH
Confidence 333333
No 351
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=84.98 E-value=20 Score=39.43 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHhhhhhHHH-------HHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEK-------LQSIQLKQDLTEAESQNTDLYKE-LQSVRGQLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~-------~~~~~l~~~l~e~e~~~~~~~~e-lq~~~~ql~~~q~~~~~le~~~~el~~~lq 587 (637)
++.|+++...++..+.+.. .+...++.++.+.+.++++.-++ +.....+++..+.+...|+.++..++.++.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445544444444333332 33344555555555544433322 233333333344455556666666666555
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHhh--cCCCceeeeccCC
Q 006645 588 TMETLQKELELLQRQK-------AASEQAALNAKR--QSSGGMWGWLAGA 628 (637)
Q Consensus 588 ~~q~~~~e~~~~~~~~-------~~~~~~~~~~~r--~~~~g~w~~~~~~ 628 (637)
.+-+.+.++.+|+++. .++=+..++... ....+.|.=|.-.
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~~~~~~n~rvIs~A 416 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQEASPIGNARVISPA 416 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCceeEeccc
Confidence 5333333444443332 222222233332 2355666666554
No 352
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.96 E-value=3.5 Score=41.59 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=3.6
Q ss_pred HHHHHHHHHh
Q 006645 579 VAELRQKLQT 588 (637)
Q Consensus 579 ~~el~~~lq~ 588 (637)
+++++.+|++
T Consensus 77 ~E~~~~~l~~ 86 (263)
T PRK10803 77 IQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 353
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=84.88 E-value=6.6 Score=45.22 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=8.6
Q ss_pred hhhhhHHHHHHHHHHHHhHH
Q 006645 571 RCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 571 ~~~~le~~~~el~~~lq~~q 590 (637)
|...||.++.+.+.+.+.+|
T Consensus 386 ~l~~le~~l~~~~~~~~~L~ 405 (656)
T PRK06975 386 QFAQLDGKLADAQSAQQALE 405 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 354
>PRK04043 tolB translocation protein TolB; Provisional
Probab=84.83 E-value=63 Score=35.05 Aligned_cols=149 Identities=12% Similarity=0.113 Sum_probs=83.5
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
.++|++|+.+++=+.+... .+........-++ +|++.-... ...+++.+|+.++.+..+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~--------------~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS--------------QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred CEEEEEECCCCcEEEEecC--------------CCcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEccc
Confidence 4899999999876666432 1111111222244 565544332 23589999999999988854
Q ss_pred CCCCCCCCCceEEEEE-CCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCC
Q 006645 290 YGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (637)
Q Consensus 290 ~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~ 368 (637)
. +. ........- +.+|++.-...+ ...||++|+.+...+.+...+. ... ...-.++.|++.....
T Consensus 275 ~---~~-~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 275 Y---PG-IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRET 340 (419)
T ss_pred C---CC-ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCC
Confidence 2 11 111111112 345666543321 3579999999999887754321 111 2222344454444322
Q ss_pred CCC---CcCcEEEEECCCCeeEeccc
Q 006645 369 HAA---CFNDLHVLDLQTMEWSRPTQ 391 (637)
Q Consensus 369 ~~~---~~~dl~~~d~~t~~W~~l~~ 391 (637)
... ...+++++|+.++.+..+..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCC
Confidence 221 23579999999999888753
No 355
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.67 E-value=2.9 Score=45.05 Aligned_cols=7 Identities=0% Similarity=-0.254 Sum_probs=3.1
Q ss_pred EEEEEcC
Q 006645 427 VIVAFGG 433 (637)
Q Consensus 427 ~l~v~GG 433 (637)
.+|+++|
T Consensus 30 ~~~~~~~ 36 (475)
T PRK13729 30 ALYLSDV 36 (475)
T ss_pred eEEEecc
Confidence 3444444
No 356
>PF14282 FlxA: FlxA-like protein
Probab=84.65 E-value=6.8 Score=33.53 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.0
Q ss_pred HHHhHHHHHHHHh
Q 006645 515 LIATLKAEKEELE 527 (637)
Q Consensus 515 ~~~~l~~~~~~le 527 (637)
.|..|+.+...|+
T Consensus 20 ~I~~L~~Qi~~Lq 32 (106)
T PF14282_consen 20 QIEQLQKQIKQLQ 32 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 3333443333333
No 357
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.60 E-value=7 Score=38.33 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006645 538 IQLKQDLTEAESQNTDLYKELQSVRG 563 (637)
Q Consensus 538 ~~l~~~l~e~e~~~~~~~~elq~~~~ 563 (637)
..|...+..++..+..+.++++.+..
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 358
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.59 E-value=9.6 Score=46.16 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 006645 607 EQAALNAK 614 (637)
Q Consensus 607 ~~~~~~~~ 614 (637)
|+.+.+++
T Consensus 240 e~~~~~~~ 247 (1109)
T PRK10929 240 ERALESTE 247 (1109)
T ss_pred HHHHHHHH
Confidence 33334444
No 359
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.57 E-value=19 Score=38.62 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=61.8
Q ss_pred EEeCCEEEEEEccCCCCCcceeEEEEECCCCce-EeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEEC
Q 006645 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (637)
Q Consensus 252 v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~ 330 (637)
...+|+|+.+|+..+. |-+||..+..- ..+.. ...|. ...-.+..++.++++|+-+. -+-.+|+
T Consensus 76 fR~DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~a-h~apv--~~~~f~~~d~t~l~s~sDd~------v~k~~d~ 140 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGH------VKVFDMKSRVILRQLYA-HQAPV--HVTKFSPQDNTMLVSGSDDK------VVKYWDL 140 (487)
T ss_pred eecCCeEEEccCCcCc------EEEeccccHHHHHHHhh-ccCce--eEEEecccCCeEEEecCCCc------eEEEEEc
Confidence 3447999999998664 88999555211 11100 01221 22223446889999997543 2445566
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCC-eeE
Q 006645 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM-EWS 387 (637)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~-~W~ 387 (637)
++..- .....+-.-.-|+ ..+.-.+++|++.||+++ .+-.||+.+. .|.
T Consensus 141 s~a~v-~~~l~~htDYVR~--g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 141 STAYV-QAELSGHTDYVRC--GDISPANDHIVVTGSYDG-----KVRLWDTRSLTSRV 190 (487)
T ss_pred CCcEE-EEEecCCcceeEe--eccccCCCeEEEecCCCc-----eEEEEEeccCCcee
Confidence 55552 3222221112222 233334678999999875 3667777665 443
No 360
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=84.53 E-value=35 Score=31.80 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=37.7
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
...|.++.+.+...+.+.+....+..+.+.+.+.++.+.+++.++...+.
T Consensus 36 ~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A 85 (167)
T PRK14475 36 AGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAA 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777788888888887777777777888888887777777666554
No 361
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.48 E-value=5.1 Score=36.55 Aligned_cols=36 Identities=36% Similarity=0.423 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 553 DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 553 ~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
.++.+.+..+.++.+-+.+..+|+.++..|+++++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 362
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=84.47 E-value=24 Score=35.21 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
...+.++++.....+.+.+...++....+.+.+.++++.+++.+....+
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~ 79 (246)
T TIGR03321 31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTK 79 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777766666666666666666666666666555443
No 363
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.43 E-value=15 Score=43.02 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 547 AESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 547 ~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
++...+++..++..++.+-...|.+..+..+.+-++|..|++
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333333444444444333333333333333333344444433
No 364
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=84.42 E-value=34 Score=32.35 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=33.0
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDV 579 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~ 579 (637)
..|..+...+++++...+.....++++|.+.+....+.+.....+....++-+++...++.++
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qL 69 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQL 69 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555555555566666666666666666555555555444444444444443333333
No 365
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=84.41 E-value=22 Score=39.75 Aligned_cols=106 Identities=23% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHh----
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAE-QSRCFKLEVDVAELRQKLQT---- 588 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~-q~~~~~le~~~~el~~~lq~---- 588 (637)
+.|..+..+.+..++...+.+-.+..|+.+....+..+-++...||...+--|.+ +++...|=+++.+|++.|+.
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006645 589 ----METLQKELELLQRQKAASEQAALNAKRQSSG 619 (637)
Q Consensus 589 ----~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~~ 619 (637)
-+.+-.|+++|++++++.|....+.-++.+.
T Consensus 603 aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~ 637 (961)
T KOG4673|consen 603 AARREDMFRGEIEDLQRRLQAAERRCEELIQQVPE 637 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 366
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=84.38 E-value=28 Score=34.11 Aligned_cols=22 Identities=5% Similarity=0.071 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 006645 528 SSLSKEKLQSIQLKQDLTEAES 549 (637)
Q Consensus 528 ~~~~e~~~~~~~l~~~l~e~e~ 549 (637)
..++.++++.+.+.-+|+++..
T Consensus 136 ~rlA~kEQEmqe~~sqi~~lK~ 157 (330)
T KOG2991|consen 136 MRLATKEQEMQECTSQIQYLKQ 157 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444443
No 367
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=84.35 E-value=20 Score=35.32 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=4.4
Q ss_pred HHHHHHHHHhhh
Q 006645 540 LKQDLTEAESQN 551 (637)
Q Consensus 540 l~~~l~e~e~~~ 551 (637)
|..+|+.+..++
T Consensus 138 L~~Kierrk~El 149 (338)
T KOG3647|consen 138 LGSKIERRKAEL 149 (338)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 368
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.31 E-value=15 Score=42.73 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=38.7
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAE 568 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~ 568 (637)
..++++.+.++....+.+-.....+++++....++++.++.+.+.+.+|...
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ 643 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA 643 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777767777777777888888888888888888888887643
No 369
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.08 E-value=14 Score=43.49 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHHHhhhhhHHH
Q 006645 514 HLIATLKAEKEELESSLSKEK 534 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~ 534 (637)
+.+..|++.+..|.+++.+++
T Consensus 652 k~~~~L~~~k~rl~eel~ei~ 672 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQ 672 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543
No 370
>PTZ00420 coronin; Provisional
Probab=83.94 E-value=82 Score=35.63 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=53.8
Q ss_pred CCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEE--E--ECCEEEEEeCCCCCCCCCCceEEEEC
Q 006645 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVT--L--VGTSLVIFGGEDAKRSLLNDLHILDL 330 (637)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~--~--~~~~lyv~GG~~~~~~~~n~i~~yd~ 330 (637)
++.+++.|+.+. .+.+||+.++.=...-. + ....+...... . -++..++.+|.+... ...+.+||+
T Consensus 178 dG~lLat~s~D~------~IrIwD~Rsg~~i~tl~-g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWDl 247 (568)
T PTZ00420 178 KGNLLSGTCVGK------HMHIIDPRKQEIASSFH-I-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWDL 247 (568)
T ss_pred CCCEEEEEecCC------EEEEEECCCCcEEEEEe-c-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEEC
Confidence 677777776543 58899998764221100 0 00011111111 1 134566666665432 245889998
Q ss_pred CC-CceEEecCCCCCCCcccccEEEE--EcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEec
Q 006645 331 ET-MTWDEIDAVGVPPSPRSDHAAAV--HAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (637)
Q Consensus 331 ~t-~~W~~~~~~~~~p~~r~~h~~~~--~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l 389 (637)
.+ ..-........ ..+..+.. ..++.+|+.|..+ +.|.+|++....-..+
T Consensus 248 r~~~~pl~~~~ld~----~~~~L~p~~D~~tg~l~lsGkGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 248 KNTTSALVTMSIDN----ASAPLIPHYDESTGLIYLIGKGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCCceEEEEecC----CccceEEeeeCCCCCEEEEEECC-----CeEEEEEccCCcEEee
Confidence 74 22111100000 00000111 1246688887544 3478888766643333
No 371
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.91 E-value=31 Score=32.66 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=29.0
Q ss_pred hhHHHHhHHHHHH---H-------HhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006645 512 TEHLIATLKAEKE---E-------LESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAE 568 (637)
Q Consensus 512 ~e~~~~~l~~~~~---~-------le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~ 568 (637)
.+..+..|++++. + |.+++.+....+..|..+|+........+..+|..++..++.+
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~e 128 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREE 128 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555665544 2 3344444555555555555555555555555555555544433
No 372
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=83.87 E-value=29 Score=36.14 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=4.3
Q ss_pred HHHHHHHHhhhh
Q 006645 519 LKAEKEELESSL 530 (637)
Q Consensus 519 l~~~~~~le~~~ 530 (637)
++.....++.++
T Consensus 85 a~a~l~~~~~~~ 96 (334)
T TIGR00998 85 AEANLAALVRQT 96 (334)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 373
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.84 E-value=5.4 Score=44.58 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKA 604 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~ 604 (637)
+|+.+|.++....-++..++...++++..++++|+..-+ +....+-+.+|++.+.++..+-+....++..++++..+.+
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~q 173 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLE 173 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhh
Q 006645 605 ASEQAALNAKR 615 (637)
Q Consensus 605 ~~~~~~~~~~r 615 (637)
++.++|..+.+
T Consensus 174 e~naeL~rarq 184 (916)
T KOG0249|consen 174 ELNAELQRARQ 184 (916)
T ss_pred HHHHHHHHHHH
No 374
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=83.79 E-value=27 Score=36.71 Aligned_cols=7 Identities=14% Similarity=-0.244 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 006645 605 ASEQAAL 611 (637)
Q Consensus 605 ~~~~~~~ 611 (637)
+++|++.
T Consensus 310 alcr~ls 316 (552)
T KOG2129|consen 310 ALCRMLS 316 (552)
T ss_pred HHHHHhh
Confidence 3445543
No 375
>PRK02119 hypothetical protein; Provisional
Probab=83.79 E-value=6.4 Score=31.14 Aligned_cols=7 Identities=0% Similarity=-0.239 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 006645 604 AASEQAA 610 (637)
Q Consensus 604 ~~~~~~~ 610 (637)
+.+-+++
T Consensus 47 ~~L~~rl 53 (73)
T PRK02119 47 RYMANKL 53 (73)
T ss_pred HHHHHHH
Confidence 3333333
No 376
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.77 E-value=15 Score=42.75 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHH--
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKEL-- 596 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~-- 596 (637)
+..+..++...+.....+.+.++.++.+++.++.++..++++....+.+...|..++-++..++.+++.+++...+++
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHhhcCC
Q 006645 597 --ELLQRQKAASEQAALNAKRQSS 618 (637)
Q Consensus 597 --~~~~~~~~~~~~~~~~~~r~~~ 618 (637)
..++.....+++.+..+++++.
T Consensus 475 EE~~l~~~i~~~~~dl~~~~~~L~ 498 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEEDLSRAEKNLR 498 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 377
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=83.75 E-value=16 Score=41.47 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006645 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQK 603 (637)
Q Consensus 524 ~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~ 603 (637)
.+++.++.+.+.+++.++++|+..+.++...+.+.+....++.+.+.+. .-|+..-++.+.-.+-+.++.+++
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~-------~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQ-------LLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333333322222222222 222223333333344455566666
Q ss_pred HHHHHHHHHHhhcC
Q 006645 604 AASEQAALNAKRQS 617 (637)
Q Consensus 604 ~~~~~~~~~~~r~~ 617 (637)
+...+++++.+|..
T Consensus 155 ~~~~~~~q~~~R~a 168 (632)
T PF14817_consen 155 QGQVEQLQDIQRKA 168 (632)
T ss_pred HHHHHHHHHHHhhc
Confidence 66666777776643
No 378
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.73 E-value=70 Score=34.71 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=74.7
Q ss_pred CcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCC-EEEEEEccCCCCCcceeEEEEECCCCceEeecc
Q 006645 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (637)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (637)
..++.+|+.+++=..+... + .........-++ +|++.....+ ..++|.+|+.+.....+..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~-------------~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF-------------K-GSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecC-------------C-CCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC
Confidence 4699999988865554321 1 111111222244 5555443322 3578999988777666532
Q ss_pred CCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEeCCC
Q 006645 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGS 368 (637)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~h~~~~~~-~~~l~v~GG~~ 368 (637)
. . .........-+++.++|..... + ...+|.++..+.....+...+ .......+.. ++.|+.....
T Consensus 282 ~---~-~~~~~~~wSpDG~~l~f~s~~~-g--~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~- 348 (427)
T PRK02889 282 S---S-GIDTEPFFSPDGRSIYFTSDRG-G--APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRV- 348 (427)
T ss_pred C---C-CCCcCeEEcCCCCEEEEEecCC-C--CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEcc-
Confidence 1 1 1111112222444334432211 1 346899998888777775321 1122223333 4445444332
Q ss_pred CCCCcCcEEEEECCCCeeEecc
Q 006645 369 HAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 369 ~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
+.. ..++++|+.+.....+.
T Consensus 349 ~g~--~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 349 GGA--FKLYVQDLATGQVTALT 368 (427)
T ss_pred CCc--EEEEEEECCCCCeEEcc
Confidence 221 36999999888777654
No 379
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.71 E-value=15 Score=32.32 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=4.3
Q ss_pred HHHHHhhhhhH
Q 006645 522 EKEELESSLSK 532 (637)
Q Consensus 522 ~~~~le~~~~e 532 (637)
+++++.+.++.
T Consensus 51 ql~~vs~~l~~ 61 (126)
T PF07889_consen 51 QLEQVSESLSS 61 (126)
T ss_pred HHHHHHHHHHH
Confidence 33343333333
No 380
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.63 E-value=15 Score=28.76 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006645 556 KELQSVRGQLAAEQSRCFKLEVDVAELRQK 585 (637)
Q Consensus 556 ~elq~~~~ql~~~q~~~~~le~~~~el~~~ 585 (637)
+|-....++|...-..+.+|..++..|+++
T Consensus 33 ~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 33 RERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444344444444444444444
No 381
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=83.60 E-value=16 Score=39.92 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 518 ~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
.|.-++.-|+.++...++.-.+|+.++.+.|+++..+.+++.+.++.
T Consensus 333 eL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 333 ELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred hhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556677777777777777888888888888888888887777554
No 382
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=83.56 E-value=21 Score=39.23 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=9.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHH
Q 006645 518 TLKAEKEELESSLSKEKLQSI 538 (637)
Q Consensus 518 ~l~~~~~~le~~~~e~~~~~~ 538 (637)
.+.++.+.|++++.++..++.
T Consensus 418 ~~~e~~~~L~qqlD~kd~~~n 438 (607)
T KOG0240|consen 418 ILTERIESLYQQLDQKDDQIN 438 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444443
No 383
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=83.49 E-value=6.6 Score=40.59 Aligned_cols=41 Identities=20% Similarity=0.449 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceee
Q 006645 580 AELRQKLQTMETLQKELELLQRQKAASEQAALNAKRQSSGGMWG 623 (637)
Q Consensus 580 ~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~~g~w~ 623 (637)
..|+++|..+.+...+++++..+-..+.+.|. -.+.+|.||
T Consensus 34 ~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~---~~k~rG~wG 74 (304)
T PF02646_consen 34 GSLKEQLKQLSEANGEIQQLSQEASNLTSALK---NSKTRGNWG 74 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---CCCchhhHH
Confidence 44455555555555555555555555555554 445667776
No 384
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=83.46 E-value=12 Score=41.28 Aligned_cols=58 Identities=31% Similarity=0.290 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh-h-------hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006645 553 DLYKELQSVRGQLAAEQSRC-F-------KLEVDVAELRQKLQTMETLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 553 ~~~~elq~~~~ql~~~q~~~-~-------~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~ 610 (637)
.++.++.+.+.+++++-.+. . -++++++.|.+++..++.....+=+.+.+..++++++
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~ 382 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREA 382 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHH
Confidence 44555555555555443333 1 1333333333333333333333345555555666555
No 385
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=83.31 E-value=16 Score=32.61 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=11.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~ 553 (637)
.+...+...+.+....+..+..+..++..
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~ 51 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIV 51 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333444444444444433333333
No 386
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=83.26 E-value=22 Score=40.37 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG 563 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ 563 (637)
...|+.+.+.|+.++++..++++.+..++...+...++...++.+.++
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777888888888888888888877777766666555555444
No 387
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.22 E-value=23 Score=33.77 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=24.2
Q ss_pred HhhhhhhHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 569 QSRCFKLEVDVAELRQKLQT----METLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 569 q~~~~~le~~~~el~~~lq~----~q~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
++...+|++++-+||++.+. .+..++++..++.......+++..++
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666555443 23444555555555555555554443
No 388
>PF13514 AAA_27: AAA domain
Probab=83.21 E-value=19 Score=44.41 Aligned_cols=51 Identities=33% Similarity=0.409 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEK---LQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~---~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
.|..+..+.++++.++++.. .+...+++++++.+.+++++++++...+.++
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~ 204 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAEL 204 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666665533 4445566666666666666666666555544
No 389
>PRK13684 Ycf48-like protein; Provisional
Probab=83.20 E-value=64 Score=33.81 Aligned_cols=172 Identities=10% Similarity=0.096 Sum_probs=82.5
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceE
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSL 251 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~ 251 (637)
+|++..... ++......++...++..|+.|.. ..+++=+=.-.+|..+.... ..+. ..+..
T Consensus 77 tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~----------~~~~--~~~~i 137 (334)
T PRK13684 77 TWEERSLDL-PEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSE----------KLPG--SPYLI 137 (334)
T ss_pred CceECccCC-cccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCc----------CCCC--CceEE
Confidence 899876421 11122233444456667776531 12333222235899885320 0111 11223
Q ss_pred EEe-CCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEE-E
Q 006645 252 IPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL-D 329 (637)
Q Consensus 252 v~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~y-d 329 (637)
..+ ++.+|+.|... .++.-+-.-.+|..+.. +..-..+.+....+..|+..|..+ .++.- |
T Consensus 138 ~~~~~~~~~~~g~~G-------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~ 200 (334)
T PRK13684 138 TALGPGTAEMATNVG-------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWE 200 (334)
T ss_pred EEECCCcceeeeccc-------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcC
Confidence 333 34566665431 23333334568998854 112223334444443444433222 23332 3
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEE--ECCCCeeEecc
Q 006645 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVL--DLQTMEWSRPT 390 (637)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~--d~~t~~W~~l~ 390 (637)
....+|..+.. +..+.-++++...++.++++|... ..++ +-...+|+.+.
T Consensus 201 ~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 201 PGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPI 252 (334)
T ss_pred CCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCcccccc
Confidence 34467988853 344555666666667788887542 2333 22345898763
No 390
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=83.16 E-value=2.8 Score=38.32 Aligned_cols=39 Identities=33% Similarity=0.436 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006645 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKEL 558 (637)
Q Consensus 520 ~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~el 558 (637)
++++++|+.+|.+.+.+++.|+|-|..++++..++.+.|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456678888899999999999999999998888888775
No 391
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=83.13 E-value=22 Score=37.23 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQS-RCFKLEVDVAELRQKLQTMETLQ 593 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~-~~~~le~~~~el~~~lq~~q~~~ 593 (637)
++.-+......++......+.+.++|+++..+...++.+.-.+..+.+.+|=.+=- -+-....+|++||++|...+..+
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~ 210 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEE 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence 33333434445555444555555555555555555554444444444443311100 01223445566666665555444
Q ss_pred H
Q 006645 594 K 594 (637)
Q Consensus 594 ~ 594 (637)
+
T Consensus 211 ~ 211 (342)
T PF06632_consen 211 K 211 (342)
T ss_dssp H
T ss_pred c
Confidence 4
No 392
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.05 E-value=19 Score=37.93 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=9.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLT 545 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~ 545 (637)
.+...+++++.++++||++..
T Consensus 45 ai~a~~~~~E~~l~~Lq~e~~ 65 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQEENT 65 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 393
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.99 E-value=24 Score=41.36 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=44.9
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQK 585 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~ 585 (637)
++++++.++.+...++..+++.+...+.....+++....+..+.++..+...++...+.|...+|-++..|-++
T Consensus 634 ~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~q 707 (1072)
T KOG0979|consen 634 IEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQ 707 (1072)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777777776666666666666666666666666555544455554555444443333
No 394
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=82.93 E-value=40 Score=31.24 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
...+.+++..+...+.+.+...++....+.+.+..+.+..++.+....+.
T Consensus 34 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14473 34 LNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQA 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777778888777777777777777777777777777665554
No 395
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.89 E-value=42 Score=31.52 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006645 575 LEVDVAELRQKLQTMETLQKELELLQRQKAASEQA 609 (637)
Q Consensus 575 le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~ 609 (637)
.++++..+++||.+++.+++++-.-..++.+++=-
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~ 140 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRENLELKELCLY 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45777788888877776665554333344444433
No 396
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=82.87 E-value=26 Score=38.26 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=12.3
Q ss_pred EEEEEcCCCCCCcccEEEEeCC
Q 006645 427 VIVAFGGYNGRYNNEVHVLKPS 448 (637)
Q Consensus 427 ~l~v~GG~~~~~~~~v~~~d~~ 448 (637)
.|+|.-| |....|+|.||-.
T Consensus 195 viii~RG--GGS~eDL~~Fn~e 214 (438)
T PRK00286 195 VLIVARG--GGSLEDLWAFNDE 214 (438)
T ss_pred EEEEecC--CCCHHHhhccCcH
Confidence 4555433 2367889999843
No 397
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.80 E-value=23 Score=30.44 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=10.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHh
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAES 549 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~ 549 (637)
.++++++....+.+.+..++.+.+.
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 398
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=82.72 E-value=25 Score=29.62 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 006645 592 LQKELELLQRQ 602 (637)
Q Consensus 592 ~~~e~~~~~~~ 602 (637)
|.+.++.+|.+
T Consensus 59 L~kRV~~LQ~E 69 (102)
T PF10205_consen 59 LTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 399
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=82.71 E-value=31 Score=31.66 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=7.8
Q ss_pred hhhhHHHHHHHHHHHHh
Q 006645 572 CFKLEVDVAELRQKLQT 588 (637)
Q Consensus 572 ~~~le~~~~el~~~lq~ 588 (637)
...|.++++..+++|..
T Consensus 125 i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 125 IQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 400
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.52 E-value=15 Score=40.15 Aligned_cols=8 Identities=13% Similarity=-0.139 Sum_probs=4.1
Q ss_pred CCceeeec
Q 006645 618 SGGMWGWL 625 (637)
Q Consensus 618 ~~g~w~~~ 625 (637)
....|.=|
T Consensus 375 ~~~~~~Vi 382 (444)
T TIGR03017 375 NQTDISIL 382 (444)
T ss_pred CCCceEee
Confidence 34456555
No 401
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=82.51 E-value=45 Score=31.99 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHhHHHHHH
Q 006645 575 LEVDVAELRQKLQTMETLQK 594 (637)
Q Consensus 575 le~~~~el~~~lq~~q~~~~ 594 (637)
+++.++++++++++.+..++
T Consensus 104 ~e~~e~~ak~~l~~aE~~~e 123 (207)
T PF05546_consen 104 NEQAEEEAKEALEEAEEKVE 123 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555566666655554333
No 402
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.42 E-value=28 Score=29.15 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 006645 577 VDVAELRQKLQTMETLQKEL 596 (637)
Q Consensus 577 ~~~~el~~~lq~~q~~~~e~ 596 (637)
.+...|..++....++..++
T Consensus 59 ~e~k~L~~~~~Ks~~~i~~L 78 (96)
T PF08647_consen 59 NEMKKLNTQLSKSSELIEQL 78 (96)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 33344444444433333333
No 403
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.24 E-value=34 Score=30.01 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=11.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQN 551 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~ 551 (637)
.++.+++....+.+.+..++.+.+..+
T Consensus 18 ~lq~~l~~~~~q~~~le~q~~e~~~~~ 44 (121)
T PRK09343 18 QLQQQLERLLQQKSQIDLELREINKAL 44 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 404
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=82.20 E-value=42 Score=31.05 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
...+.++...+.+.+.+.+...++.++-+.+.+.++.+.+.+.++...+
T Consensus 32 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~ 80 (161)
T COG0711 32 LKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQ 80 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777666666666666677776666666655444
No 405
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.18 E-value=23 Score=42.08 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 006645 591 TLQKELELLQ 600 (637)
Q Consensus 591 ~~~~e~~~~~ 600 (637)
+|++.+++|+
T Consensus 1623 eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1623 ELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 406
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=82.18 E-value=88 Score=34.70 Aligned_cols=63 Identities=14% Similarity=0.021 Sum_probs=32.8
Q ss_pred cceeEEEEECCCCc--eEeeccCCCCCCCCCceEEEE-----ECC---EEEEEeCCCCCCCCCCceEEEECCCCc--eEE
Q 006645 270 EIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTL-----VGT---SLVIFGGEDAKRSLLNDLHILDLETMT--WDE 337 (637)
Q Consensus 270 ~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~-----~~~---~lyv~GG~~~~~~~~n~i~~yd~~t~~--W~~ 337 (637)
..+.++.+|..+++ |..-....+...-+.....++ +++ .++++|.. ...++.+|..+.+ |+.
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~------~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK------NGFFYVLDRTTGKLISAR 327 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC------CceEEEEECCCCcEeeEe
Confidence 45689999998865 876432111100011111111 223 24455543 2458999998865 865
Q ss_pred e
Q 006645 338 I 338 (637)
Q Consensus 338 ~ 338 (637)
-
T Consensus 328 ~ 328 (488)
T cd00216 328 P 328 (488)
T ss_pred E
Confidence 4
No 407
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=82.08 E-value=34 Score=29.96 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006645 591 TLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~ 610 (637)
++..++..++...+.++..+
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444443433333333
No 408
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=82.03 E-value=43 Score=31.01 Aligned_cols=51 Identities=8% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQL 565 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql 565 (637)
+...+.++...+...+.+.+....+..+.+.+.++.+.+.+++.+....+.
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEA 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777777777777777777777777777766665544
No 409
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.97 E-value=11 Score=30.01 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 006645 528 SSLSKEKLQSIQLKQDLTE 546 (637)
Q Consensus 528 ~~~~e~~~~~~~l~~~l~e 546 (637)
..++++..++.+|..+.+.
T Consensus 5 ~~l~EKDe~Ia~L~eEGek 23 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEK 23 (74)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3444455555555544443
No 410
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.95 E-value=25 Score=41.18 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=3.8
Q ss_pred EEEcCCC
Q 006645 429 VAFGGYN 435 (637)
Q Consensus 429 ~v~GG~~ 435 (637)
.+-||..
T Consensus 660 tlTGGs~ 666 (1174)
T KOG0933|consen 660 TLTGGSR 666 (1174)
T ss_pred cccCCCC
Confidence 4556654
No 411
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=81.92 E-value=7 Score=27.94 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 006645 579 VAELRQKLQTME-TLQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 579 ~~el~~~lq~~q-~~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
..||+++|..++ +.++|+++++++-++..|=+.+|
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 467778888877 78888888888877777766655
No 412
>PRK05137 tolB translocation protein TolB; Provisional
Probab=81.90 E-value=83 Score=34.21 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=56.7
Q ss_pred eeEEEEECCCCceEeeccCCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccc
Q 006645 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (637)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (637)
..++++|+.++....+.. .+...... ...-++ +|++....++ ..+||++|+.+.....+... +. ..
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~-~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~--~~ 292 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAP-RFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA--ID 292 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCc-EECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC--cc
Confidence 579999999988877643 12111111 112234 5554433222 35799999998887776432 11 11
Q ss_pred cEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 351 h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
.......++.-++|.....+ ...+|++|+.+.....+.
T Consensus 293 ~~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSG--SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CceeEcCCCCEEEEEECCCC--CCeEEEEECCCCCeEEee
Confidence 12233334433334332111 247999999887777664
No 413
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.55 E-value=13 Score=38.17 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 006645 537 SIQLKQDLTEAESQNTDLYKE 557 (637)
Q Consensus 537 ~~~l~~~l~e~e~~~~~~~~e 557 (637)
+..|+.++.++.+.+.+++..
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhch
Confidence 333333443333333333333
No 414
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.54 E-value=59 Score=34.96 Aligned_cols=167 Identities=17% Similarity=0.081 Sum_probs=84.2
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccce-EEEe-CCEEEEEEccCCCC----
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS-LIPW-ENKLLSIAGHTKDP---- 268 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs-~v~~-~~~lyv~GG~~~~~---- 268 (637)
+++.++++=..+|.-...++++|+.+++...-. .....++ ++.. ++..+++.......
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----------------EEEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----------------ccccccceEEEeCCCCEEEEEEeCccccccc
Confidence 455666654444444457999999999554321 1122222 3333 33555555444331
Q ss_pred -CcceeEEEEECCCCceEeeccCCCCCCCCC-ceEEEEE-CC-EEEEEeCCCCCCCCCCceEEEECCCC-----ceEEec
Q 006645 269 -SEIIQVKVFDLQTCSWSTLKTYGKPPVSRG-GQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETM-----TWDEID 339 (637)
Q Consensus 269 -~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~~~~~-~~-~lyv~GG~~~~~~~~n~i~~yd~~t~-----~W~~~~ 339 (637)
.....|++..+.+..-.-..... .+.... ...+... ++ .|+|.-..... .+++|.+|+... .|..+.
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe-~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFE-EPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEEEEE
T ss_pred CCCCcEEEEEECCCChHhCeeEEe-ecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcEEEe
Confidence 22678999998887654111111 111222 2222222 33 44443332211 378999999875 888885
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe---eEe
Q 006645 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME---WSR 388 (637)
Q Consensus 340 ~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~---W~~ 388 (637)
.. ..-.. ..+-..++.+||.-.. ......|..+++.+.. |..
T Consensus 274 ~~----~~~~~-~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~ 318 (414)
T PF02897_consen 274 PR----EDGVE-YYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWT 318 (414)
T ss_dssp ES----SSS-E-EEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEE
T ss_pred CC----CCceE-EEEEccCCEEEEeeCC--CCCCcEEEEeccccccccccee
Confidence 32 22222 2222336778887652 2234568888887665 664
No 415
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=81.53 E-value=27 Score=38.18 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=28.8
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ 564 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q 564 (637)
...++++++.+...+.+.++..+++.+-.++.++.+++..++.+++..+
T Consensus 27 ~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~ 75 (445)
T PRK13428 27 RRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEE 75 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666555555555555555566666555555443
No 416
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=81.51 E-value=74 Score=33.39 Aligned_cols=177 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred eeEEEE--CCEEEEE--cccCCCcccCcEEEEEccCCe--EEEeeecccccCCCCCCCCCCCCcccceEEEe---CCEEE
Q 006645 189 HGAAVV--QDKMYIY--GGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLL 259 (637)
Q Consensus 189 ~a~~~~--~~~lyv~--GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~---~~~ly 259 (637)
|++... ++.|||. |. +.+++|+..... ........ .++-.+..-..+ +.++|
T Consensus 147 H~v~~~pdg~~v~v~dlG~-------D~v~~~~~~~~~~~l~~~~~~~------------~~~G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDLGA-------DRVYVYDIDDDTGKLTPVDSIK------------VPPGSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp EEEEE-TTSSEEEEEETTT-------TEEEEEEE-TTS-TEEEEEEEE------------CSTTSSEEEEEE-TTSSEEE
T ss_pred eeEEECCCCCEEEEEecCC-------CEEEEEEEeCCCceEEEeeccc------------cccCCCCcEEEEcCCcCEEE
Q ss_pred EEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCce-EEEEE-----CCEEEEEeCCCCCCCCCCceEEEEC--C
Q 006645 260 SIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQ-SVTLV-----GTSLVIFGGEDAKRSLLNDLHILDL--E 331 (637)
Q Consensus 260 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~-----~~~lyv~GG~~~~~~~~n~i~~yd~--~ 331 (637)
|..-. ...-.++.++..++.++.+......|....+. .+..+ +..||+.-.. .|.|.+|++ .
T Consensus 208 v~~e~----s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~ 277 (345)
T PF10282_consen 208 VVNEL----SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPA 277 (345)
T ss_dssp EEETT----TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTT
T ss_pred EecCC----CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecC
Q ss_pred CCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCCCCCC
Q 006645 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP 398 (637)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~ 398 (637)
+.+.+.+... ......-..+++..++..+++++...+. -.++..|..++.+..+...-..+.|
T Consensus 278 ~g~l~~~~~~--~~~G~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~~d~~tG~l~~~~~~~~~~~p 340 (345)
T PF10282_consen 278 TGTLTLVQTV--PTGGKFPRHFAFSPDGRYLYVANQDSNT--VSVFDIDPDTGKLTPVGSSVPIPSP 340 (345)
T ss_dssp TTTEEEEEEE--EESSSSEEEEEE-TTSSEEEEEETTTTE--EEEEEEETTTTEEEEEEEEEESSSE
T ss_pred CCceEEEEEE--eCCCCCccEEEEeCCCCEEEEEecCCCe--EEEEEEeCCCCcEEEecccccCCCC
No 417
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=81.35 E-value=60 Score=32.25 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=78.1
Q ss_pred ceEEecccCCCCCC-------CCcceeEEEECCEEEEEcccCCCcccCcEEEEE-ccC------CeEEEeeecccccCCC
Q 006645 171 DQWIAPPISGQRPK-------ARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILD-LRS------WAWSKIQAKAVAESTE 236 (637)
Q Consensus 171 ~~W~~~~~~g~~p~-------~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd-~~t------~~W~~~~~~~~~~~~~ 236 (637)
+.|+..... ..|. .-.-|+.|.+++.=|.+|=.+++.....+-.+- +.. ..=+.+...
T Consensus 115 spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se------- 186 (367)
T PF12217_consen 115 SPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE------- 186 (367)
T ss_dssp S--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-------
T ss_pred CCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-------
Confidence 378864422 2233 345689999999888887544432222222221 111 111111110
Q ss_pred CCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCC
Q 006645 237 SPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGED 316 (637)
Q Consensus 237 ~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~ 316 (637)
.-..-+-.+.-.+++.||+.--.......-+.+.+-+.....|+.+.-. -.........+.+++.||+||-..
T Consensus 187 -----y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 187 -----YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp -----G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEEEEE-S
T ss_pred -----hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEEEeccc
Confidence 1112222334456999999865444334556788888888899998541 111222334567899999998642
Q ss_pred CC---------CCCC---CceEE-------EECCCCceEEecC---CCCCCCcccccEEEEEcCCEE-EEEeCC
Q 006645 317 AK---------RSLL---NDLHI-------LDLETMTWDEIDA---VGVPPSPRSDHAAAVHAERYL-LIFGGG 367 (637)
Q Consensus 317 ~~---------~~~~---n~i~~-------yd~~t~~W~~~~~---~~~~p~~r~~h~~~~~~~~~l-~v~GG~ 367 (637)
.. .+|- ...+. ++++.-+|..+.. .|..-..-.+-.++++.++.| |||||-
T Consensus 260 A~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgE 333 (367)
T PF12217_consen 260 AENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGE 333 (367)
T ss_dssp STT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB
T ss_pred cccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCc
Confidence 11 1111 11111 1445566766642 122223334445566667755 588884
No 418
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.35 E-value=40 Score=33.44 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHhhhHHHHHHHH
Q 006645 519 LKAEKEELESSLSKEKLQSI-------QLKQDLTEAESQNTDLYKELQ 559 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~-------~l~~~l~e~e~~~~~~~~elq 559 (637)
....+..++..+........ +.+.++.+..+++++...+|.
T Consensus 90 ~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 90 EQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444443333 444444444444444444433
No 419
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.32 E-value=16 Score=40.86 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006645 591 TLQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
+++++++++++++..++++|...
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555433
No 420
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=81.23 E-value=17 Score=32.38 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.2
Q ss_pred HHHHHH
Q 006645 560 SVRGQL 565 (637)
Q Consensus 560 ~~~~ql 565 (637)
.++.++
T Consensus 60 ~i~~q~ 65 (131)
T PF11068_consen 60 SIQQQF 65 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 421
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=81.21 E-value=41 Score=34.06 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHh-----hhhhhHHHHHHHHHHHHhHHHHH----HHHHHHHHHH
Q 006645 537 SIQLKQDLTEAESQNTDLYKELQSVRGQLA----AEQS-----RCFKLEVDVAELRQKLQTMETLQ----KELELLQRQK 603 (637)
Q Consensus 537 ~~~l~~~l~e~e~~~~~~~~elq~~~~ql~----~~q~-----~~~~le~~~~el~~~lq~~q~~~----~e~~~~~~~~ 603 (637)
+.--+.++...++++++....|..++..-. ++|. -.-+||.++..++.+|.+.+..- =|+.-|.-+.
T Consensus 181 ~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lkari 260 (372)
T COG3524 181 VRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARI 260 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHH
Confidence 334455666777777777777777765311 1111 12578888888888887755322 2345555555
Q ss_pred HHHHHHHHHHh-hcCCCc
Q 006645 604 AASEQAALNAK-RQSSGG 620 (637)
Q Consensus 604 ~~~~~~~~~~~-r~~~~g 620 (637)
..+++|+.+-. +..+||
T Consensus 261 eSlrkql~qe~q~isag~ 278 (372)
T COG3524 261 ESLRKQLLQEKQAISAGG 278 (372)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 56666664433 444444
No 422
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=81.14 E-value=27 Score=31.61 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006645 531 SKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAA 567 (637)
Q Consensus 531 ~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~ 567 (637)
.+...+.....+.+++.+.++.++.+...+++.++.+
T Consensus 19 e~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~ 55 (146)
T PRK07720 19 EKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEE 55 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566667777778888888888888888877644
No 423
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=81.06 E-value=49 Score=31.07 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHhhhhhHHH---------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 006645 516 IATLKAEKEELESSLSKEK---------------LQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVA 580 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~---------------~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~ 580 (637)
...++.....++.+++.++ -+++.|..+|+|+..++..+.......-+.|.--.++..-+..+..
T Consensus 15 ~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 15 NITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006645 581 ELRQKLQT----METLQKELELLQRQKAASEQAALNAKRQSS 618 (637)
Q Consensus 581 el~~~lq~----~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~ 618 (637)
.+++++.. +.++..++.....+......+......+.+
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 424
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=81.03 E-value=17 Score=32.11 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHHH
Q 006645 573 FKLEVDVAELRQKLQ 587 (637)
Q Consensus 573 ~~le~~~~el~~~lq 587 (637)
...+.++.+++..+.
T Consensus 85 ~~i~~eV~~v~~dv~ 99 (126)
T PF07889_consen 85 KQIKDEVTEVREDVS 99 (126)
T ss_pred HHHHHHHHHHHhhHH
Confidence 334444444444333
No 425
>PRK03629 tolB translocation protein TolB; Provisional
Probab=80.99 E-value=89 Score=33.97 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=55.4
Q ss_pred eeEEEEECCCCceEeeccCCCCCCCCCceEEEEECC-EEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccc
Q 006645 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (637)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (637)
..++++|+.+++-..+.. .+..... ....-++ +|++.....+ ..+||++|+.+.....+... +. ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence 478999998887666543 1111111 1112234 5555433222 23599999999888777432 11 11
Q ss_pred cEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecc
Q 006645 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (637)
Q Consensus 351 h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~ 390 (637)
.......++..++|...... ...+|.+|+.+..-..+.
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEee
Confidence 22333344444444332211 247899999887666553
No 426
>PRK01156 chromosome segregation protein; Provisional
Probab=80.86 E-value=28 Score=41.83 Aligned_cols=7 Identities=29% Similarity=0.468 Sum_probs=2.7
Q ss_pred EEEEEcc
Q 006645 258 LLSIAGH 264 (637)
Q Consensus 258 lyv~GG~ 264 (637)
+.++.|.
T Consensus 25 i~~I~G~ 31 (895)
T PRK01156 25 INIITGK 31 (895)
T ss_pred eEEEECC
Confidence 3333333
No 427
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.75 E-value=69 Score=32.59 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=57.4
Q ss_pred cCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEE------EeCCEEEEEEccCCCCCcceeEEEEECCCCc
Q 006645 210 LSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLI------PWENKLLSIAGHTKDPSEIIQVKVFDLQTCS 283 (637)
Q Consensus 210 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v------~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 283 (637)
.+.++.||..+++-+-+-.-. ...++...+=+ .+++.||+.-+-+ -..--+|..|..++.
T Consensus 77 YSHVH~yd~e~~~VrLLWkes-----------ih~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~ 142 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKES-----------IHDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGK 142 (339)
T ss_pred cceEEEEEcCCCeEEEEEecc-----------cCCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCc
Confidence 568999999987644432211 11112111111 2367888875432 223468888988988
Q ss_pred eEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCce
Q 006645 284 WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTW 335 (637)
Q Consensus 284 W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W 335 (637)
=+.+.. -|.+. .+...+..+|-+ ..-..-.+.|.+||+.+.+|
T Consensus 143 ~~~L~~---~ps~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 143 AEKLSS---NPSLK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred eeeccC---CCCcC---ceEeeeeEEEec---cccccCCceEEEEEccCCeE
Confidence 888865 23332 122223233322 22111257899999999999
No 428
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=80.71 E-value=42 Score=35.03 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 006645 540 LKQDLTEAESQNTDLYKELQS 560 (637)
Q Consensus 540 l~~~l~e~e~~~~~~~~elq~ 560 (637)
++.+++..+.++...++++..
T Consensus 112 ~~~~l~~ak~~l~~a~~~~~r 132 (331)
T PRK03598 112 ARAAVKQAQAAYDYAQNFYNR 132 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 429
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=80.62 E-value=8.2 Score=40.50 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006645 593 QKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 593 ~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
|-|.+-++.+.+--+.||.+|.
T Consensus 346 E~E~q~~~kkrqnaekql~~Ak 367 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAK 367 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH
Confidence 3345556666667777887774
No 430
>PLN00181 protein SPA1-RELATED; Provisional
Probab=80.56 E-value=1.3e+02 Score=35.64 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=34.7
Q ss_pred CCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEE---CCEEEEEeCCCCCCCCCCceEEEECC
Q 006645 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLE 331 (637)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~n~i~~yd~~ 331 (637)
++.+++.||.++ .+.+||+.+..-...-. . .....++.+ ++.++++|+.+ +.|.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~---~---~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIK---T---KANICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEe---c---CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 457778887654 47888887654221111 0 111122222 46777888753 468999987
Q ss_pred CC
Q 006645 332 TM 333 (637)
Q Consensus 332 t~ 333 (637)
+.
T Consensus 649 ~~ 650 (793)
T PLN00181 649 NP 650 (793)
T ss_pred CC
Confidence 54
No 431
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=80.50 E-value=28 Score=31.54 Aligned_cols=36 Identities=33% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006645 532 KEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAA 567 (637)
Q Consensus 532 e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~ 567 (637)
....+....+++++..+.+++++.+...++..++.+
T Consensus 20 ~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~ 55 (147)
T PRK05689 20 QAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLND 55 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777788887777777776543
No 432
>PRK00295 hypothetical protein; Provisional
Probab=80.44 E-value=11 Score=29.32 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 540 LKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 540 l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+.+.|.++|.++.-.+.-+.+....+.+.+.....|+++++.|.+++.+++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 433
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=80.43 E-value=1.5e+02 Score=36.36 Aligned_cols=221 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred eeEEEE--CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEe----CCEEEEEE
Q 006645 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW----ENKLLSIA 262 (637)
Q Consensus 189 ~a~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~----~~~lyv~G 262 (637)
+.+++. ++.|||.-..+ +.+.++|+.++.-+.+...+..................+-.... ++.|||..
T Consensus 627 ~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Q ss_pred ccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCC------------ceEEEEECCEEEEEeCCCCCCCCCCceEEEEC
Q 006645 263 GHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRG------------GQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (637)
Q Consensus 263 G~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~------------~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~ 330 (637)
..... |+.||+.++....+...|....... +.+...-++.|||.... .+.|.+||+
T Consensus 702 ~~~~~------I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~ 769 (1057)
T PLN02919 702 AGQHQ------IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDL 769 (1057)
T ss_pred CCCCe------EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEEC
Q ss_pred CCCceEEec-----------------CCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCC
Q 006645 331 ETMTWDEID-----------------AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQG 393 (637)
Q Consensus 331 ~t~~W~~~~-----------------~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~ 393 (637)
.+.....+. ..+....-..-.++++..++.|||....+ +.|.+||+.++....+...|
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccC
Q ss_pred C--------CCCCCcccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCCcccEEEEeCCCC
Q 006645 394 E--------IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (637)
Q Consensus 394 ~--------~p~~R~~hs~~~~~~~~yiG~s~~~~~~~g~~~l~v~GG~~~~~~~~v~~~d~~~~ 450 (637)
. ....-..-..+.++. .+.|||.-..+ +.|.++|+.+.
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~---------------dG~lyVaDt~N----n~Irvid~~~~ 890 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGE---------------NGRLFVADTNN----SLIRYLDLNKG 890 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeC---------------CCCEEEEECCC----CEEEEEECCCC
No 434
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=80.42 E-value=0.53 Score=51.21 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh--------HH
Q 006645 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT--------ME 590 (637)
Q Consensus 519 l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~--------~q 590 (637)
+-+..+....+..+...+.++++++|..++++|....+.|.++++.| ...+++.++.+.++|.+|++ .+
T Consensus 353 ~s~D~E~~~~~~~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrL---l~QEqqt~Kll~qyq~RLedSE~RLr~QQ~ 429 (495)
T PF12004_consen 353 LSADIEGKLKEYRESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRL---LSQEQQTQKLLLQYQARLEDSEERLRRQQE 429 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHhhhhhHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006645 591 TLQKELELLQRQKAASEQAAL 611 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~ 611 (637)
+++.++...-.++-..|+||+
T Consensus 430 eKd~qmksII~RL~~vEeELr 450 (495)
T PF12004_consen 430 EKDSQMKSIISRLMAVEEELR 450 (495)
T ss_dssp ---------------------
T ss_pred hhHHHHHHHHhhhhhhhhhhh
No 435
>PRK10698 phage shock protein PspA; Provisional
Probab=80.33 E-value=54 Score=32.16 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG--QLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 513 e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~--ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
++....|....+++++.+.+.+..+.+....-...++++.+.+.+....+. .++-..-+..--.+-+.+.+.-.+.+.
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 591 TLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
.++.+++........+.+++...+
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~ 126 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELE 126 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 436
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.33 E-value=81 Score=33.09 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcceeE
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v 274 (637)
++.||+..........=..+.++..+++...+.... .....-.|.++.-+++.+++.-+... .+
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-----------~~g~~p~~i~~~~~g~~l~vany~~g-----~v 111 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-----------SGGSSPCHIAVDPDGRFLYVANYGGG-----SV 111 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-----------ESSSCEEEEEECTTSSEEEEEETTTT-----EE
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-----------cCCCCcEEEEEecCCCEEEEEEccCC-----eE
Q ss_pred EEEECCCCceEeec----------cCCCCCCCCCceEEEEE--CCEEEEEeCCCCCCCCCCceEEEECCCCc--eEEecC
Q 006645 275 KVFDLQTCSWSTLK----------TYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDA 340 (637)
Q Consensus 275 ~~yd~~t~~W~~~~----------~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~n~i~~yd~~t~~--W~~~~~ 340 (637)
.+|++....-.... +.......-..|.+... ++.+|+..-- .+.|++|+++... ......
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------ADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------TTEEEEEEE-TTS-TEEEEEE
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------CCEEEEEEEeCCCceEEEeec
Q ss_pred CCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECC--CCeeEecccCCCCCCCC----cccEEEEECCccccc
Q 006645 341 VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ--TMEWSRPTQQGEIPTPR----AGHAGVTIGENWFLG 414 (637)
Q Consensus 341 ~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~--t~~W~~l~~~~~~p~~R----~~hs~~~~~~~~yiG 414 (637)
...++..--.|.+..-.+.++||..-.+ +.|..|+.. +..++.+......|..- ..+..++-.+
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd----- 255 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD----- 255 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT-----
T ss_pred cccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC-----
Q ss_pred eeeeeeccCCCCEEEEEcCCCCCCcccEEEEeCCCC
Q 006645 415 LSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (637)
Q Consensus 415 ~s~~~~~~~g~~~l~v~GG~~~~~~~~v~~~d~~~~ 450 (637)
+.+||+--. ..+.|.+|++...
T Consensus 256 ----------g~~lyvsnr----~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 256 ----------GRFLYVSNR----GSNSISVFDLDPA 277 (345)
T ss_dssp ----------SSEEEEEEC----TTTEEEEEEECTT
T ss_pred ----------CCEEEEEec----cCCEEEEEEEecC
No 437
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=80.27 E-value=58 Score=31.40 Aligned_cols=201 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEE
Q 006645 183 PKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIA 262 (637)
Q Consensus 183 p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~G 262 (637)
......+.....++.++++|+. .+.+..||..+..-...... ...........-++..+++|
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKG-------------HTGPVRDVAASADGTYLASG 69 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEec-------------CCcceeEEEECCCCCEEEEE
Q ss_pred ccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCC
Q 006645 263 GHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (637)
Q Consensus 263 G~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~ 342 (637)
+.++. +.+||+.+......-. ............-++.+++.|+. .+.+.+||+.+..-...-..
T Consensus 70 ~~~~~------i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~- 133 (289)
T cd00200 70 SSDKT------IRLWDLETGECVRTLT---GHTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGKCLTTLRG- 133 (289)
T ss_pred cCCCe------EEEEEcCcccceEEEe---ccCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcEEEEEecc-
Q ss_pred CCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCccccceeeeeecc
Q 006645 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSY 422 (637)
Q Consensus 343 ~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yiG~s~~~~~~ 422 (637)
....-.++....++.+++.|+.+ ..+.+||+.+..-... .......-.++....+.
T Consensus 134 ---~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~----~~~~~~~i~~~~~~~~~------------ 189 (289)
T cd00200 134 ---HTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVAT----LTGHTGEVNSVAFSPDG------------ 189 (289)
T ss_pred ---CCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccccccee----EecCccccceEEECCCc------------
Q ss_pred CCCCEEEEEcCCCCCCcccEEEEeCCC
Q 006645 423 SGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (637)
Q Consensus 423 ~g~~~l~v~GG~~~~~~~~v~~~d~~~ 449 (637)
..+++|+. ...+.+||+..
T Consensus 190 ----~~l~~~~~----~~~i~i~d~~~ 208 (289)
T cd00200 190 ----EKLLSSSS----DGTIKLWDLST 208 (289)
T ss_pred ----CEEEEecC----CCcEEEEECCC
No 438
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.25 E-value=61 Score=32.38 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHhhhhhhHHHHHHHHHHHHh----
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG----QLAAEQSRCFKLEVDVAELRQKLQT---- 588 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~----ql~~~q~~~~~le~~~~el~~~lq~---- 588 (637)
..++.=+.+|++-....+..+..|++++.+++..+...++++.-... +---..-+++.|.++++.++...|.
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdElde 142 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDE 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006645 589 -METLQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 589 -~q~~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
.+-++.++..+..+.+...+++..+
T Consensus 143 l~e~~~~el~~l~~~~q~k~~~il~~ 168 (258)
T PF15397_consen 143 LNEMRQMELASLSRKIQEKKEEILSS 168 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=80.21 E-value=60 Score=33.00 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred eEEEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEE
Q 006645 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (637)
Q Consensus 250 s~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd 329 (637)
.++..+..=.+.||.++. |-.||+.++.=..+-+...+.....+. .....+|.||++.. |-++|
T Consensus 59 ~c~F~d~~~~~~G~~dg~------vr~~Dln~~~~~~igth~~~i~ci~~~----~~~~~vIsgsWD~~------ik~wD 122 (323)
T KOG1036|consen 59 DCAFADESTIVTGGLDGQ------VRRYDLNTGNEDQIGTHDEGIRCIEYS----YEVGCVISGSWDKT------IKFWD 122 (323)
T ss_pred eeeccCCceEEEeccCce------EEEEEecCCcceeeccCCCceEEEEee----ccCCeEEEcccCcc------EEEEe
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe-------------eEecccCCCCC
Q 006645 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME-------------WSRPTQQGEIP 396 (637)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~-------------W~~l~~~~~~p 396 (637)
+.. -...+..-.+..-+++.+. ++ .+|+|+.+ ..+.+||+.+.. -+.+. -.|
T Consensus 123 ~R~-----~~~~~~~d~~kkVy~~~v~-g~-~LvVg~~~-----r~v~iyDLRn~~~~~q~reS~lkyqtR~v~---~~p 187 (323)
T KOG1036|consen 123 PRN-----KVVVGTFDQGKKVYCMDVS-GN-RLVVGTSD-----RKVLIYDLRNLDEPFQRRESSLKYQTRCVA---LVP 187 (323)
T ss_pred ccc-----cccccccccCceEEEEecc-CC-EEEEeecC-----ceEEEEEcccccchhhhccccceeEEEEEE---Eec
Q ss_pred CCCcccEEEEECCcccc----------------------------ceeeeeeccCCCCEEEEEcCCCC
Q 006645 397 TPRAGHAGVTIGENWFL----------------------------GLSLVVSSYSGEDVIVAFGGYNG 436 (637)
Q Consensus 397 ~~R~~hs~~~~~~~~yi----------------------------G~s~~~~~~~g~~~l~v~GG~~~ 436 (637)
.+.++++..+++++++ +--+....+..-..-++-||.+|
T Consensus 188 -n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 188 -NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred -CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
No 440
>PF14992 TMCO5: TMCO5 family
Probab=80.18 E-value=15 Score=36.89 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT----DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKL 586 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~----~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~l 586 (637)
+.+.-++.|+.+...|+..-.-..+-++.|+.++.+.+.... .+.+-++..+..+++-..-|..++.++.++....
T Consensus 60 ~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~ 139 (280)
T PF14992_consen 60 ERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDY 139 (280)
T ss_pred chHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006645 587 QT--------------METLQKELELLQRQKAASEQAALNAKRQSS 618 (637)
Q Consensus 587 q~--------------~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~ 618 (637)
++ +++..+++++ +.+..-++.++..++.+.+
T Consensus 140 ~~v~~l~eDq~~~i~klkE~L~rmE~-ekE~~lLe~el~k~q~~~s 184 (280)
T PF14992_consen 140 QQVHQLCEDQANEIKKLKEKLRRMEE-EKEMLLLEKELSKYQMQDS 184 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchhh
No 441
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.06 E-value=15 Score=40.87 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+....+....-+.++...+++..-.....--..|++.+.++..+.+-.+.+.-.+..--+...+++++++.|....+.++
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~ 345 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLE 345 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006645 591 TLQKELELLQRQKAASEQAALNAKRQ 616 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~r~ 616 (637)
+|++++..++.+.....++|....++
T Consensus 346 ~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 346 ALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=79.66 E-value=77 Score=32.75 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred eeEEEEC--------CEEEEEcc----cCCCccc-CcEEEEEccCC-----eEEEeeecccccCCCCCCCCCCCCcccce
Q 006645 189 HGAAVVQ--------DKMYIYGG----NHNGRYL-SDMHILDLRSW-----AWSKIQAKAVAESTESPSPALLTPCAGHS 250 (637)
Q Consensus 189 ~a~~~~~--------~~lyv~GG----~~~~~~~-~~v~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~p~~r~~hs 250 (637)
.+++.+. ..++++|. ....... ..+++|+.... ++..+... ...-.-++
T Consensus 27 ~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-------------~~~g~V~a 93 (321)
T PF03178_consen 27 TSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-------------EVKGPVTA 93 (321)
T ss_dssp EEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-------------EESS-EEE
T ss_pred EEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-------------eecCcceE
Q ss_pred EEEeCCEEEEEEccCCCCCcceeEEEEECCCCc-eEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEE
Q 006645 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (637)
Q Consensus 251 ~v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd 329 (637)
++.++++|.+..|. .+.+|++.... +...+. ...+-...++.++++.|++---..+-. ++.|+
T Consensus 94 i~~~~~~lv~~~g~--------~l~v~~l~~~~~l~~~~~---~~~~~~i~sl~~~~~~I~vgD~~~sv~-----~~~~~ 157 (321)
T PF03178_consen 94 ICSFNGRLVVAVGN--------KLYVYDLDNSKTLLKKAF---YDSPFYITSLSVFKNYILVGDAMKSVS-----LLRYD 157 (321)
T ss_dssp EEEETTEEEEEETT--------EEEEEEEETTSSEEEEEE---E-BSSSEEEEEEETTEEEEEESSSSEE-----EEEEE
T ss_pred hhhhCCEEEEeecC--------EEEEEEccCcccchhhhe---ecceEEEEEEeccccEEEEEEcccCEE-----EEEEE
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEE-cCCEEEEEe
Q 006645 330 LETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFG 365 (637)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~h~~~~~-~~~~l~v~G 365 (637)
....+-..+... +.++...++..+ .++ .++++
T Consensus 158 ~~~~~l~~va~d---~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 158 EENNKLILVARD---YQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp TTTE-EEEEEEE---SS-BEEEEEEEE-SSS-EEEEE
T ss_pred ccCCEEEEEEec---CCCccEEEEEEecCCc-EEEEE
No 443
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.66 E-value=38 Score=39.05 Aligned_cols=100 Identities=23% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHH----
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMET---- 591 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~---- 591 (637)
|..|+.+.+.....+...+.++.+|....++.....+.++.+....+..+.+-..|+..|-+.-.||.+..-.+|+
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~ 115 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV 115 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHhh
Q 006645 592 ----------LQKELELLQRQKAASEQAALNAKR 615 (637)
Q Consensus 592 ----------~~~e~~~~~~~~~~~~~~~~~~~r 615 (637)
+.-|+.-+.++...+..|+.++-|
T Consensus 116 Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 116 LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=79.57 E-value=19 Score=37.28 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-----HHHhHHHHHHHHHHH
Q 006645 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQ-----KLQTMETLQKELELL 599 (637)
Q Consensus 525 ~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~-----~lq~~q~~~~e~~~~ 599 (637)
+.+++..+.+++.++|++.-....+.++++.+-....-..+.....|...+...++.++. ..+.++++++++++.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 006645 600 QRQKAASEQAA 610 (637)
Q Consensus 600 ~~~~~~~~~~~ 610 (637)
+.....-|.-+
T Consensus 81 ~~~l~DmEa~L 91 (330)
T PF07851_consen 81 RCQLFDMEAFL 91 (330)
T ss_pred HhhHHHHHhhC
No 445
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.52 E-value=43 Score=35.39 Aligned_cols=96 Identities=11% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh---
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT--- 588 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~--- 588 (637)
.+++-..+....+.++..-.-+..+.+.+.++......++.+.+++.++...-+.+....+.++-+++.+.++++++
T Consensus 243 L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 243 LDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred -------HHHHHHHHHHHHHHHHHHH
Q 006645 589 -------METLQKELELLQRQKAASE 607 (637)
Q Consensus 589 -------~q~~~~e~~~~~~~~~~~~ 607 (637)
+....+-+..|..+..+.+
T Consensus 323 ~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 323 SMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhh
No 446
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=79.43 E-value=48 Score=29.92 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHh-HHH
Q 006645 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRC--FKLEVDVAELRQKLQT-MET 591 (637)
Q Consensus 515 ~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~--~~le~~~~el~~~lq~-~q~ 591 (637)
+...++++.+...+.+.+.+....+...-..+.+..+.+..++.+.......++-+.. ..+++-..++.+.++. ..+
T Consensus 32 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~ 111 (141)
T PRK08476 32 LLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQ 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006645 592 LQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
+++|...+..++..--..+.+.
T Consensus 112 l~~e~~~~~~~l~~qv~~~~~~ 133 (141)
T PRK08476 112 LANQKQELKEQLLSQMPEFKEA 133 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
No 447
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.42 E-value=37 Score=37.62 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHH-
Q 006645 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMET- 591 (637)
Q Consensus 513 e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~- 591 (637)
+..+..+..-..+......+.+.++.+|+.++.++...+.++++.+...+.++.....+.-.+|.++..++.+...+++
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Q 006645 592 ---LQKELELLQRQKAASEQAALNA 613 (637)
Q Consensus 592 ---~~~e~~~~~~~~~~~~~~~~~~ 613 (637)
+.+|...+..++...-.++++.
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
No 448
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=79.22 E-value=36 Score=33.81 Aligned_cols=105 Identities=31% Similarity=0.323 Sum_probs=0.0
Q ss_pred CchhHHHHhHHHHHHHHhhhhhHHHHH------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 006645 510 ETTEHLIATLKAEKEELESSLSKEKLQ------------SIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEV 577 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~e~~~~------------~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~ 577 (637)
....+.+...-.+.+.++.++...... ...|.++|......+++++..+.....++..-+.+-...+.
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~ 120 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQ 120 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Q ss_pred HHHHHHHHHHhHH-HHH-------HHHHHHHHHHHHHHHHHHHHh
Q 006645 578 DVAELRQKLQTME-TLQ-------KELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 578 ~~~el~~~lq~~q-~~~-------~e~~~~~~~~~~~~~~~~~~~ 614 (637)
.+.+.+++++++. .+. ..+.+.++-.-.-+++++.++
T Consensus 121 ~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~ 165 (240)
T PF12795_consen 121 QLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQ 165 (240)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHH
No 449
>PRK04325 hypothetical protein; Provisional
Probab=79.19 E-value=12 Score=29.72 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 538 IQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 538 ~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+.+.+.|.++|.++.-.+.-+++....+.+.+.....|+++++.|.+++.+++
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 450
>PRK11546 zraP zinc resistance protein; Provisional
Probab=79.18 E-value=24 Score=31.86 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006645 534 KLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAASE 607 (637)
Q Consensus 534 ~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~ 607 (637)
.++...++.-.++...+-+++.++|..++.+|+.......--++++..|.+++++++....+++......-+.+
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 451
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=79.15 E-value=1.7e+02 Score=36.04 Aligned_cols=175 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred eeEEEE--CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEe--CCEEEEEEcc
Q 006645 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGH 264 (637)
Q Consensus 189 ~a~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~--~~~lyv~GG~ 264 (637)
+.+++. ++.|||....++. +++||+.++....+...+.................-+.++.. ++.|||....
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~-----I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQ-----IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE 760 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCe-----EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Q ss_pred CCCCCcceeEEEEECCCCceEeeccCCCCCCCCC------------------ceEEEEECCEEEEEeCCCCCCCCCCceE
Q 006645 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRG------------------GQSVTLVGTSLVIFGGEDAKRSLLNDLH 326 (637)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~------------------~~~~~~~~~~lyv~GG~~~~~~~~n~i~ 326 (637)
+.. |.+||+.++....+...+....... ...++.-++.|||.... .+.|.
T Consensus 761 n~~------Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIr 828 (1057)
T PLN02919 761 SSS------IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIK 828 (1057)
T ss_pred CCe------EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEE
Q ss_pred EEECCCCceEEecCCC---------CCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCe
Q 006645 327 ILDLETMTWDEIDAVG---------VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (637)
Q Consensus 327 ~yd~~t~~W~~~~~~~---------~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~ 385 (637)
+||+.+.....+...| ....-..-+.+++..++.|||.-..+ +.|.++|+.+..
T Consensus 829 viD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 829 KLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred EEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
No 452
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.08 E-value=82 Score=32.46 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceE
Q 006645 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSL 251 (637)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~a~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~ 251 (637)
+|.........+.....+++...++..||+|. ..-++.-.=...+|..+.... +.+-..+..
T Consensus 48 tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~------~g~ll~T~DgG~tW~~v~l~~------------~lpgs~~~i 109 (302)
T PF14870_consen 48 TWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE------PGLLLHTTDGGKTWERVPLSS------------KLPGSPFGI 109 (302)
T ss_dssp S-EE-----S-----EEEEEEEETTEEEEEEE------TTEEEEESSTTSS-EE----T------------T-SS-EEEE
T ss_pred cccccccCCCccceeeEEEEEecCCceEEEcC------CceEEEecCCCCCcEEeecCC------------CCCCCeeEE
Q ss_pred EEeCCEEEEEEccCCCCCcceeEEEEECCCCceEeeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECC
Q 006645 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE 331 (637)
Q Consensus 252 v~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~ 331 (637)
..+++.-.++.|..+. |+.=.=.-.+|..+.. ....-..-....-++++++++.. -+-+...|+.
T Consensus 110 ~~l~~~~~~l~~~~G~------iy~T~DgG~tW~~~~~---~~~gs~~~~~r~~dG~~vavs~~------G~~~~s~~~G 174 (302)
T PF14870_consen 110 TALGDGSAELAGDRGA------IYRTTDGGKTWQAVVS---ETSGSINDITRSSDGRYVAVSSR------GNFYSSWDPG 174 (302)
T ss_dssp EEEETTEEEEEETT--------EEEESSTTSSEEEEE----S----EEEEEE-TTS-EEEEETT------SSEEEEE-TT
T ss_pred EEcCCCcEEEEcCCCc------EEEeCCCCCCeeEccc---CCcceeEeEEECCCCcEEEEECc------ccEEEEecCC
Q ss_pred CCceEEecCCCCCCCcccccEEEEEcCCEEEEEeCCCCCCCcCcEEEEE--CCCCeeEecccCCCCCCCCcccEEEEECC
Q 006645 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLD--LQTMEWSRPTQQGEIPTPRAGHAGVTIGE 409 (637)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d--~~t~~W~~l~~~~~~p~~R~~hs~~~~~~ 409 (637)
...|.... .+..|.-.++....++.|++.. .+.. +..-+ -...+|.+... +.....+++-.+.+.+
T Consensus 175 ~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~--~Gg~----~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 175 QTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA--RGGQ----IQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRP 242 (302)
T ss_dssp -SS-EEEE------SSS-EEEEEE-TTS-EEEEE--TTTE----EEEEE-TTEEEEE---B---TTSS--S-EEEEEESS
T ss_pred CccceEEc----cCccceehhceecCCCCEEEEe--CCcE----EEEccCCCCccccccccC--CcccCceeeEEEEecC
Q ss_pred ccccceeeeeeccCCCCEEEEEcCCCCCCcccEEEEeCCCCcccccccCCCCCCC
Q 006645 410 NWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSSKMIETPVPD 464 (637)
Q Consensus 410 ~~yiG~s~~~~~~~g~~~l~v~GG~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 464 (637)
.+.+++.|| ...+++-.-.-+.|...........+
T Consensus 243 ---------------~~~~wa~gg-----~G~l~~S~DgGktW~~~~~~~~~~~n 277 (302)
T PF14870_consen 243 ---------------PNEIWAVGG-----SGTLLVSTDGGKTWQKDRVGENVPSN 277 (302)
T ss_dssp ---------------SS-EEEEES-----TT-EEEESSTTSS-EE-GGGTTSSS-
T ss_pred ---------------CCCEEEEeC-----CccEEEeCCCCccceECccccCCCCc
No 453
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.04 E-value=57 Score=30.61 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT----- 588 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~----- 588 (637)
..|..-..+...+.......-+.+...++++.........+.+++...+..+..-+....+...+...++.+...
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006645 589 -----------METLQKELELLQRQKAASEQAALNAKRQSS 618 (637)
Q Consensus 589 -----------~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~ 618 (637)
.+....++++++.....+++....++....
T Consensus 136 ~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 136 GLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 454
>PRK00736 hypothetical protein; Provisional
Probab=79.01 E-value=12 Score=29.20 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 540 LKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 540 l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+.+.|.++|.++.-.+.-+++....+.+.+.....|+++++.|.+++.+++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 455
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=79.00 E-value=42 Score=38.16 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=0.0
Q ss_pred CchhHHHHhHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 510 ETTEHLIATLKAEKEELESSLS-KEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~-e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
++.......+..-.+.+-..+. ..+++.+.++.+..--|.-..|..+.-.+-+++..+++++..++|.+.....+..|+
T Consensus 892 ~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr 971 (1259)
T KOG0163|consen 892 REMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQR 971 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhc
Q 006645 589 METLQKELELLQRQKAASEQAA-LNAKRQ 616 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~-~~~~r~ 616 (637)
.-+.+.|.+...+-..++..+. .+++||
T Consensus 972 ~~qee~e~~l~~e~q~qla~e~eee~k~q 1000 (1259)
T KOG0163|consen 972 KAQEEEERRLALELQEQLAKEAEEEAKRQ 1000 (1259)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>PRK04406 hypothetical protein; Provisional
Probab=78.96 E-value=15 Score=29.30 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAA 567 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~ 567 (637)
.++.+..++++..+||..+.=-+..++.|-+.+.+-++++..++++++....++.+
T Consensus 2 ~~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 2 TEKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 457
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.95 E-value=48 Score=37.49 Aligned_cols=107 Identities=17% Similarity=0.076 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHH
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMET 591 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~ 591 (637)
+++.+...+.......+-+.+++..+..+.......+..+.+++.+.--.+..+...-.-...++.++....++++...+
T Consensus 128 ~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q 207 (716)
T KOG4593|consen 128 LERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQ 207 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006645 592 LQKELELLQRQKAASEQAALNAKRQSS 618 (637)
Q Consensus 592 ~~~e~~~~~~~~~~~~~~~~~~~r~~~ 618 (637)
.-.+.+..+++..+-.||..+...+.+
T Consensus 208 ~~~~~~~~l~e~~~~~qq~a~~~~ql~ 234 (716)
T KOG4593|consen 208 KIQELQASLEERADHEQQNAELEQQLS 234 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
No 458
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=78.88 E-value=11 Score=34.51 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006645 535 LQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRC--FKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQAALN 612 (637)
Q Consensus 535 ~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~--~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~ 612 (637)
.+.+.|..++..+++++|.+++....++.++..-+.-+ .++|+++++|++.+..+.++.+.+..-.....-.+...-.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Q ss_pred HhhcCCCceee
Q 006645 613 AKRQSSGGMWG 623 (637)
Q Consensus 613 ~~r~~~~g~w~ 623 (637)
..++.--..|+
T Consensus 159 ~~y~~~~~~wr 169 (201)
T KOG4603|consen 159 REYQKYCKEWR 169 (201)
T ss_pred HHHHHHHHHHH
No 459
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=78.84 E-value=95 Score=33.04 Aligned_cols=217 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCCeEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCCcceeE
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~~~~~v 274 (637)
+.++|+.+. -+.+.++|+.+.+ .+.... ........++.-+++..+.+.+... .+
T Consensus 48 gr~~yv~~r------dg~vsviD~~~~~--~v~~i~------------~G~~~~~i~~s~DG~~~~v~n~~~~-----~v 102 (369)
T PF02239_consen 48 GRYLYVANR------DGTVSVIDLATGK--VVATIK------------VGGNPRGIAVSPDGKYVYVANYEPG-----TV 102 (369)
T ss_dssp SSEEEEEET------TSEEEEEETTSSS--EEEEEE-------------SSEEEEEEE--TTTEEEEEEEETT-----EE
T ss_pred CCEEEEEcC------CCeEEEEECCccc--EEEEEe------------cCCCcceEEEcCCCCEEEEEecCCC-----ce
Q ss_pred EEEECCCCceEeeccCCCCCC----CCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECCCCceEEecCCCCCCCcccc
Q 006645 275 KVFDLQTCSWSTLKTYGKPPV----SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (637)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~----~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (637)
.++|..|.+=.+.-+++..+. +|.......-.+..|++--.+ .+.+|+.|.....=...... ...+.-
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~i---~~g~~~ 174 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVTTI---KVGRFP 174 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEEEE---E--TTE
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccccccceeee---cccccc
Q ss_pred cEEEEEcCCEEEEEeCCCCCCCcCcEEEEECCCCeeEecccCCCCCCCCcccEEEEECCcccc-----------------
Q 006645 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL----------------- 413 (637)
Q Consensus 351 h~~~~~~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l~~~~~~p~~R~~hs~~~~~~~~yi----------------- 413 (637)
|-.....+++.|+.+-. ..+.+-++|..++.-..+...|..|.+.........+..++-
T Consensus 175 ~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp EEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccccCcccceeeeccc----ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Q ss_pred ------------------ceeeeeeccCCCCEEEEEcCCCCCCcccEEEEeCCC
Q 006645 414 ------------------GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (637)
Q Consensus 414 ------------------G~s~~~~~~~g~~~l~v~GG~~~~~~~~v~~~d~~~ 449 (637)
|..+...++...+++++-==.+.. .+.+.++|..+
T Consensus 251 v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~-~~~v~viD~~t 303 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD-ADTVQVIDKKT 303 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS-HT-EEEEECCG
T ss_pred cccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC-CceEEEEECcC
No 460
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=78.80 E-value=50 Score=33.24 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh---HHHHHHHHHHH
Q 006645 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT---METLQKELELL 599 (637)
Q Consensus 523 ~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~---~q~~~~e~~~~ 599 (637)
...+-..+.-.-.++..++......-.+....-|.++..+..|+..+.+-.++..+++.|+.+--+ +.+|+.|+...
T Consensus 98 l~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvra 177 (271)
T PF13805_consen 98 LSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRA 177 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 006645 600 QRQKAASEQAALNAKRQS 617 (637)
Q Consensus 600 ~~~~~~~~~~~~~~~r~~ 617 (637)
+.+-..-|-||....|++
T Consensus 178 Eae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 178 EAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHhhHHH
No 461
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.77 E-value=43 Score=38.62 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG---QLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~---ql~~~q~~~~~le~~~~el~~~lq 587 (637)
+.....+.++.+...+.+++++....-.+|-+...|+|+++=.++|++-..+. .+..-.-....|++++.-|+.|++
T Consensus 66 ~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 66 ELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006645 588 T-----------METLQKELELLQRQKAASEQAALN 612 (637)
Q Consensus 588 ~-----------~q~~~~e~~~~~~~~~~~~~~~~~ 612 (637)
+ +++...-++.-++||..+.++|..
T Consensus 146 e~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 146 EAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.76 E-value=22 Score=40.03 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 509 ~~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
+......++.++.-..++++.-++.+..+++++-..+-.++-......-||.--.+.++.-++...|.++++.+++++.+
T Consensus 155 ee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~ 234 (916)
T KOG0249|consen 155 EEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEE 234 (916)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006645 589 METLQKELELLQRQKAASEQAAL 611 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~ 611 (637)
++.-+++++.-.+.+.+...||+
T Consensus 235 ~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 235 MRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
No 463
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=78.71 E-value=45 Score=29.21 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred eecCCCCCCcccCCCCCchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHH
Q 006645 494 IVVDNVDSEPLISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT-----------DLYKELQSVR 562 (637)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~-----------~~~~elq~~~ 562 (637)
++.|+...-.+ -.-+.-+..+.|+++-.+--..+.+.+.-+..+.+.+.+.-.... .+..+..+.+
T Consensus 3 l~fDe~~kiRV---ldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~ 79 (120)
T PF14931_consen 3 LYFDEENKIRV---LDPEKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQRE 79 (120)
T ss_pred eeecCCCCeee---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006645 563 GQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQ 602 (637)
Q Consensus 563 ~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~ 602 (637)
++.++-+......+.++..|+-+.+.++..+.+.+++.++
T Consensus 80 ~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~~ 119 (120)
T PF14931_consen 80 AQQQQLQALIAEKKMELERLRSEYESLQKVEQEQNELIQK 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 464
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=78.66 E-value=36 Score=35.41 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-------HHHHHHHH
Q 006645 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT-------METLQKEL 596 (637)
Q Consensus 524 ~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~-------~q~~~~e~ 596 (637)
.+++.++...+.+...++.++...+....+++.++...+.+++..+.+....+.+.+..+.-.++ +++.+.++
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~ 155 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKAL 155 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006645 597 ELLQRQKAASEQAALNAK 614 (637)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~ 614 (637)
+..+.++....++...+.
T Consensus 156 ~~a~~~l~~~~~~~~~~~ 173 (334)
T TIGR00998 156 LSAKAALNAAIQEQLNAN 173 (334)
T ss_pred HHHHHHHHHHHHHHHHHH
No 465
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.65 E-value=33 Score=35.20 Aligned_cols=103 Identities=21% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh---
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT--- 588 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~--- 588 (637)
.+++....+++.+.++.....+.+.-+.|..-.+++++..+++++|++++ +..+.-|..+++|.+.+.+.
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L-------~~niDIL~~k~~eal~~~~n~~~ 288 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSL-------QKNIDILKSKVREALEKAENLEA 288 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHhhhccCcC
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCce
Q 006645 589 ---------METLQKELELLQRQKAASEQAALNAKRQSSGGM 621 (637)
Q Consensus 589 ---------~q~~~~e~~~~~~~~~~~~~~~~~~~r~~~~g~ 621 (637)
..-|-||+=+.--.-.+-|+.+.-.++-.++|+
T Consensus 289 ~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~ 330 (365)
T KOG2391|consen 289 LDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGV 330 (365)
T ss_pred CCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCe
No 466
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.53 E-value=1e+02 Score=33.15 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCEEEEEcccCCCcccCcEEEEEccCC-----eEEEeeecccccCCCCCCCCCCCCcccceEEEeCCEEEEEEccCCCCC
Q 006645 195 QDKMYIYGGNHNGRYLSDMHILDLRSW-----AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPS 269 (637)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~p~~r~~hs~v~~~~~lyv~GG~~~~~~ 269 (637)
+..|+|.-+.... .+.++.+|.... .|..+.+ +..-..+.+...++.+|+....+..
T Consensus 238 ~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~--------------~~~~~~~~v~~~~~~~yi~Tn~~a~-- 299 (414)
T PF02897_consen 238 GRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSP--------------REDGVEYYVDHHGDRLYILTNDDAP-- 299 (414)
T ss_dssp SSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEE--------------SSSS-EEEEEEETTEEEEEE-TT-T--
T ss_pred ccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeC--------------CCCceEEEEEccCCEEEEeeCCCCC--
Q ss_pred cceeEEEEECCCCc---eE-eeccCCCCCCCCCceEEEEECCEEEEEeCCCCCCCCCCceEEEECC-CCceEEecCCCCC
Q 006645 270 EIIQVKVFDLQTCS---WS-TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE-TMTWDEIDAVGVP 344 (637)
Q Consensus 270 ~~~~v~~yd~~t~~---W~-~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~n~i~~yd~~-t~~W~~~~~~~~~ 344 (637)
...+..+++.+.. |. .+.+ ......--.+...+++|++..=.++... |.+||+. +..-..+
T Consensus 300 -~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~~~~----l~v~~~~~~~~~~~~------ 365 (414)
T PF02897_consen 300 -NGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRENGSSR----LRVYDLDDGKESREI------ 365 (414)
T ss_dssp -T-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEE----EEEEETT-TEEEEEE------
T ss_pred -CcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEECCccE----EEEEECCCCcEEeee------
Q ss_pred CCcccccEEEEE----cCCEEEEEeCCCCCCCcCcEEEEECCCCeeEec
Q 006645 345 PSPRSDHAAAVH----AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (637)
Q Consensus 345 p~~r~~h~~~~~----~~~~l~v~GG~~~~~~~~dl~~~d~~t~~W~~l 389 (637)
|.|-.+...... .+...|.+.+.. .-..+|.||+.+++.+.+
T Consensus 366 ~~p~~g~v~~~~~~~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 366 PLPEAGSVSGVSGDFDSDELRFSYSSFT---TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp ESSSSSEEEEEES-TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEE
T ss_pred cCCcceEEeccCCCCCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEE
No 467
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=78.47 E-value=3.3 Score=38.28 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 006645 537 SIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKE 595 (637)
Q Consensus 537 ~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e 595 (637)
++.+++++..+=++..=||.||++++.- +..++.|.-|+++|+|.| .++++.+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L----~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENL----REEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCH-----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHhhh
No 468
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.42 E-value=9.5 Score=44.09 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 006645 507 KHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKL 586 (637)
Q Consensus 507 ~~~~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~l 586 (637)
++.++.-+.|+.|.+|.+.|.++|..++.. ++.+.++.+++.++-+++..... ++|+.++|+.-+++|++|
T Consensus 357 vNedpnarvirElReEve~lr~qL~~ae~~------~~~el~e~l~esekli~ei~~tw---EEkl~ktE~in~erq~~L 427 (1714)
T KOG0241|consen 357 VNEDPNARVIRELREEVEKLREQLEQAEAM------KLPELKEKLEESEKLIKEITVTW---EEKLRKTEEINQERQAQL 427 (1714)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhhhc------cchHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHH
Q ss_pred HhH
Q 006645 587 QTM 589 (637)
Q Consensus 587 q~~ 589 (637)
+.+
T Consensus 428 ~~~ 430 (1714)
T KOG0241|consen 428 ESM 430 (1714)
T ss_pred HHH
No 469
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.29 E-value=39 Score=36.06 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHhhh----------hhhHHH
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQ---SVRGQLAAEQSRC----------FKLEVD 578 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq---~~~~ql~~~q~~~----------~~le~~ 578 (637)
.++....|.+++..+.+.+.-.+-+-.+ -.+|++.+..++-+.++.+ +...+|-.+-++. +...+.
T Consensus 316 wed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi 394 (521)
T KOG1937|consen 316 WEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEI 394 (521)
T ss_pred HHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006645 579 VAELRQKLQTMETLQKELELLQRQKAASEQAA 610 (637)
Q Consensus 579 ~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~ 610 (637)
+.-++++-+++++...+-.+||.|+.....+|
T Consensus 395 ~gniRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 395 DGNIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=78.27 E-value=28 Score=38.82 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHH----
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMET---- 591 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~---- 591 (637)
+..|+.+...+++++...+.++..+.-++++++.++....+.+++.-++++..-......|.+.+.+++.+..+++
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~ 355 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSR 355 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------HHHHHHHHHHHHHHH
Q 006645 592 -----------LQKELELLQRQKAAS 606 (637)
Q Consensus 592 -----------~~~e~~~~~~~~~~~ 606 (637)
++.|++.++.++..+
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSAR 381 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHH
No 471
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=78.14 E-value=55 Score=35.10 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred ccceEeeecCCCC----CCcccCCCCCchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006645 488 EGKIREIVVDNVD----SEPLISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRG 563 (637)
Q Consensus 488 ~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ 563 (637)
.+.+..+.....+ -+..-.++..+.+..+...+......+.++.+......+++.+++..+.++...+++++..+.
T Consensus 69 ~G~V~~v~V~~Gd~VkkGqvL~~LD~~~~~~~l~~A~a~l~~a~~~~~~~~~~~~~~~a~l~~a~a~l~~a~~~~~R~~~ 148 (390)
T PRK15136 69 SGSVTKVWADNTDFVKEGDVLVTLDPTDAEQAFEKAKTALANSVRQTHQLMINSKQYQANIELQKTALAQAQSDLNRRVP 148 (390)
T ss_pred CeEEEEEEcCCCCEECCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHhhhhhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006645 564 ----------QLAAEQSRCFKLEVDVAELRQKLQTME-TLQKELELLQRQKAASEQAALNAKRQSSG 619 (637)
Q Consensus 564 ----------ql~~~q~~~~~le~~~~el~~~lq~~q-~~~~e~~~~~~~~~~~~~~~~~~~r~~~~ 619 (637)
++.+.+......+.++...++++...+ .+.......+.+....+-++..++.....
T Consensus 149 L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~v~~a~a~l~~a~~~L~~ 215 (390)
T PRK15136 149 LGNANLIGREELQHARDAVASAQAQLDVAIQQYNANQAMILNTPLEDQPAVQQAATEVRNAWLALQR 215 (390)
T ss_pred HHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhC
No 472
>PRK10869 recombination and repair protein; Provisional
Probab=78.12 E-value=15 Score=41.50 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+..+.+..+....+++...++.....+.---.+|++.+.++..+.+-.+.+-..+.+--....++++++.++......++
T Consensus 265 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~ 344 (553)
T PRK10869 265 GVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLE 344 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006645 591 TLQKELELLQRQKAASEQAALNAKRQ 616 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~r~ 616 (637)
++++++.++..+.....++|.++.++
T Consensus 345 ~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 345 TLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=78.08 E-value=40 Score=35.12 Aligned_cols=91 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred CchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHH
Q 006645 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT----DLYKELQSVRGQLA-AEQSRCFKLEVDVAELRQ 584 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~----~~~~elq~~~~ql~-~~q~~~~~le~~~~el~~ 584 (637)
+..+.+...++.+..-+-+.|+|.+=..++|+++|.++.+..| .+.+||-..+..++ +.=+|.+..|+-+.-.|-
T Consensus 281 esye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqt 360 (455)
T KOG3850|consen 281 ESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQT 360 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHH
Q 006645 585 KLQTMETLQKELELLQ 600 (637)
Q Consensus 585 ~lq~~q~~~~e~~~~~ 600 (637)
++-.++=.+.+.|..|
T Consensus 361 risKlEl~qq~qqv~Q 376 (455)
T KOG3850|consen 361 RISKLELQQQQQQVVQ 376 (455)
T ss_pred HHHHHHHHHHHHHHHH
No 474
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=77.94 E-value=52 Score=37.89 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred CchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-
Q 006645 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT- 588 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~- 588 (637)
+..+...+.+...+.-++......+.+..+..++..+.+...++..++..+++-+-+.++++-...+.|+.+++.+.-+
T Consensus 557 ~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke 636 (988)
T KOG2072|consen 557 KNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKE 636 (988)
T ss_pred hcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006645 589 -----------------------------------METLQKELELLQRQKAASEQAALNAKRQS 617 (637)
Q Consensus 589 -----------------------------------~q~~~~e~~~~~~~~~~~~~~~~~~~r~~ 617 (637)
+++++||-.++++.++..+.-++=.+|.+
T Consensus 637 ~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 637 RLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
No 475
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.91 E-value=42 Score=28.48 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH----------------------HHHHHHHHHHHHHHHHHhhhh
Q 006645 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT----------------------DLYKELQSVRGQLAAEQSRCF 573 (637)
Q Consensus 516 ~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~----------------------~~~~elq~~~~ql~~~q~~~~ 573 (637)
.+.+..+.+.++++++....+.+.+..++.|.+.-+. ....-...+...+..-+.+..
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHH
Q 006645 574 KLEVDVAELRQKLQTMETLQKELE 597 (637)
Q Consensus 574 ~le~~~~el~~~lq~~q~~~~e~~ 597 (637)
.++.++..+++++.+++...++++
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 476
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.90 E-value=51 Score=33.90 Aligned_cols=109 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------HHHHHhhhhhhHHHH
Q 006645 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQ------------LAAEQSRCFKLEVDV 579 (637)
Q Consensus 512 ~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~q------------l~~~q~~~~~le~~~ 579 (637)
.++..+...........++.+...++..|+.++.+++.++..+.+..+.-..= -+..++.....+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l 198 (301)
T PF14362_consen 119 QEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAEL 198 (301)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHH-HHH----HHHHHHHHHHHHHHHHHHHHhhcCCCce
Q 006645 580 AELRQKLQTME-TLQ----KELELLQRQKAASEQAALNAKRQSSGGM 621 (637)
Q Consensus 580 ~el~~~lq~~q-~~~----~e~~~~~~~~~~~~~~~~~~~r~~~~g~ 621 (637)
+.++.+++..+ +++ .+.+.+....+....+.+... ....|.
T Consensus 199 ~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~-~~~~G~ 244 (301)
T PF14362_consen 199 DTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAII-SANDGF 244 (301)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhh-ccCCCH
No 477
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=77.87 E-value=20 Score=30.69 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006645 533 EKLQSIQLKQDLTEAESQNTDLYKELQSV--RGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQK 603 (637)
Q Consensus 533 ~~~~~~~l~~~l~e~e~~~~~~~~elq~~--~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~ 603 (637)
...+...+.+.+.+.+++++.+|++++.. +.++..-+-+..++.-++.++..+++. +.++++.|.+++
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~---v~~~~~lLlE~~ 102 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG---VSHQLDLLLENE 102 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHH
No 478
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=77.83 E-value=43 Score=35.61 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred hhHHHHhHHHH-----HHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 006645 512 TEHLIATLKAE-----KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKL 586 (637)
Q Consensus 512 ~e~~~~~l~~~-----~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~l 586 (637)
.+..++.|+++ .+++..++++...+.++|.++|.+.+.+.+++-.+|++.+..-.+..++..+..++-..-+.++
T Consensus 162 Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~ 241 (447)
T KOG2751|consen 162 YKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQL 241 (447)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred Hh----HHHHHHHHHHHHHHHHHH
Q 006645 587 QT----METLQKELELLQRQKAAS 606 (637)
Q Consensus 587 q~----~q~~~~e~~~~~~~~~~~ 606 (637)
-+ ++.++-+++-.+.|+.-+
T Consensus 242 ~~~~del~Sle~q~~~s~~qldkL 265 (447)
T KOG2751|consen 242 IEHQDELDSLEAQIEYSQAQLDKL 265 (447)
T ss_pred hcccchHHHHHHHHHHHHHHHHHH
No 479
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=77.82 E-value=55 Score=29.76 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 006645 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAES------QNTDLYKELQSVRGQLAAEQSRCFKLEVDVAE 581 (637)
Q Consensus 508 ~~~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~------~~~~~~~elq~~~~ql~~~q~~~~~le~~~~e 581 (637)
..++....+..+..+.+..+++|.........+.+++..+-. +.+..++.+..++..+++.+.....+..++.+
T Consensus 17 ~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~ 96 (148)
T COG2882 17 EEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQ 96 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006645 582 LRQKLQTMETLQKELELLQRQKAASEQAALNAKRQS 617 (637)
Q Consensus 582 l~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~~~r~~ 617 (637)
.++.+++.+...+-.+.|.++..+.-...+.+..|+
T Consensus 97 ~r~~w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eqk 132 (148)
T COG2882 97 KREIWQEKQIELKALEKLKERQKTEFLLEENRREQK 132 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 480
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=77.78 E-value=57 Score=29.89 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 511 TTEHLIATLKAEKEELESSLSK---EKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e---~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq 587 (637)
...++-.....+...+=..+.. ...++...++++.-+.....++++++.+...++.+++......++++.+.+++.+
T Consensus 40 ~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~e 119 (152)
T PF07321_consen 40 ELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQE 119 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCC
Q 006645 588 TMETLQKELELLQRQKAASEQAALNAK-RQSSG 619 (637)
Q Consensus 588 ~~q~~~~e~~~~~~~~~~~~~~~~~~~-r~~~~ 619 (637)
...+|-+..+.-..+..+...++.+-+ +..++
T Consensus 120 Kf~eL~~~~~~e~~~~~e~~Ee~E~EEf~~~~~ 152 (152)
T PF07321_consen 120 KFAELAEQEQAEARQQREYQEEQEQEEFRRVSR 152 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 481
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=77.76 E-value=14 Score=42.43 Aligned_cols=85 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006645 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAAS 606 (637)
Q Consensus 527 e~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~ 606 (637)
.....+.......+++++..+|+++.++++++.+++.++.........-..+++++.+++++ ++++++++..++.++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~w~~l 624 (638)
T PRK10636 548 KRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQAS---AKSGLEECEMAWLEA 624 (638)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 006645 607 EQAALNAK 614 (637)
Q Consensus 607 ~~~~~~~~ 614 (637)
+.++.+.+
T Consensus 625 ~~~~~~~~ 632 (638)
T PRK10636 625 QEQLEQML 632 (638)
T ss_pred HHHHHHHh
No 482
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.75 E-value=54 Score=36.70 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh--
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT-- 588 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~-- 588 (637)
.....+..+..++.+....|.....+...|+..+.-+..++.....++...+............|+.++...+.+|+.
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006645 589 ----------------METLQKELELLQRQKAASEQAALNAKRQ 616 (637)
Q Consensus 589 ----------------~q~~~~e~~~~~~~~~~~~~~~~~~~r~ 616 (637)
++++..+.++..........++.....+
T Consensus 358 ~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E 401 (522)
T PF05701_consen 358 AEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEE 401 (522)
T ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.73 E-value=12 Score=29.42 Aligned_cols=56 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHH
Q 006645 536 QSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMET 591 (637)
Q Consensus 536 ~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~ 591 (637)
....+.+.|.++|.++.=.+.-+++....+.+-+.....|+++++.|.++|.+++.
T Consensus 2 ~~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 2 QDSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 484
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=77.72 E-value=27 Score=37.85 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH----------HHHHHHHH---HHHHHHHhhh-hhhHHHHHHH
Q 006645 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL----------YKELQSVR---GQLAAEQSRC-FKLEVDVAEL 582 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~----------~~elq~~~---~ql~~~q~~~-~~le~~~~el 582 (637)
+.+..+...++.++...+.+...++.+++..+..+.+. .++....+ .++...+... .+.+..++++
T Consensus 128 ~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (421)
T TIGR03794 128 RHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQQQWREEQEKYDAADKARAIYALQTKADERNL 207 (421)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhH
Q ss_pred HHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 006645 583 RQKLQTMETLQKELELL-QRQKAASEQAALNAKRQ 616 (637)
Q Consensus 583 ~~~lq~~q~~~~e~~~~-~~~~~~~~~~~~~~~r~ 616 (637)
+..++++.+.+.+++.+ ..++.+.+.++.+++.+
T Consensus 208 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 242 (421)
T TIGR03794 208 ETVLQSLSQADFQLAGVAEKELETVEARIKEARYE 242 (421)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
No 485
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.71 E-value=13 Score=31.81 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHH
Q 006645 538 IQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMET 591 (637)
Q Consensus 538 ~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~ 591 (637)
..|-..|.+.++++.++..++.+++.++.+--+.-..|+-|-+.|+++|.+..+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>PRK10722 hypothetical protein; Provisional
Probab=77.49 E-value=19 Score=35.17 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006645 529 SLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKL----EVDVAELRQKLQTMETLQKELELLQRQKA 604 (637)
Q Consensus 529 ~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~l----e~~~~el~~~lq~~q~~~~e~~~~~~~~~ 604 (637)
+.+..-..+.....+....-+=+.++=.+-|-.+-+|++|+.|+.+| +.++..++|+...+|........-.+.+.
T Consensus 124 err~~l~rl~~~~~~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 124 ERRQIVERLNAYSLQIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 006645 605 ASEQAA 610 (637)
Q Consensus 605 ~~~~~~ 610 (637)
.-|+||
T Consensus 204 dIERqL 209 (247)
T PRK10722 204 DIERQL 209 (247)
T ss_pred HHHHHh
No 487
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=77.47 E-value=14 Score=33.44 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHH
Q 006645 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETL 592 (637)
Q Consensus 513 e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q~~ 592 (637)
++.+........++.+.+.+.+........++++..+++.++.+.+-.+=..++--+.+-+-+..+..+|..+|+.++..
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006645 593 QKELELLQRQKAASEQAAL 611 (637)
Q Consensus 593 ~~e~~~~~~~~~~~~~~~~ 611 (637)
...=..+..++.++--+++
T Consensus 123 l~~p~~~~~rl~El~a~l~ 141 (141)
T PF13874_consen 123 LNAPAQLKGRLNELWAQLR 141 (141)
T ss_dssp -------------------
T ss_pred HcCchhHHHHHHHHHHHhC
No 488
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.45 E-value=40 Score=40.68 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHH---HHHH-----------HHhhhhh
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQ--LKQDLTEAESQNTDLYKELQSVRG---QLAA-----------EQSRCFK 574 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~--l~~~l~e~e~~~~~~~~elq~~~~---ql~~-----------~q~~~~~ 574 (637)
..++.+..++.+...+.. +.+.+..... +..++...+++..+++...+.++. +++. .+....+
T Consensus 200 ~~~~~~~~~~~e~~~~~~-l~e~~~~~~~~~l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (908)
T COG0419 200 DIEDLLEALEEELKELKK-LEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRE 278 (908)
T ss_pred hhHHHHHHHHHHHHHHHh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 575 LEVDVAELRQKLQTMETLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 575 le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
++....+++..++.+++.++++.++.++.......+.+.+
T Consensus 279 ~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~ 318 (908)
T COG0419 279 LERLLEELEEKIERLEELEREIEELEEELEGLRALLEELE 318 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.33 E-value=15 Score=43.37 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006645 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQ 587 (637)
Q Consensus 508 ~~~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq 587 (637)
..+.....+..++.+...++..+...+.++...+++....-++++...+.+...+..+.+ +.+..+..++...+..++.
T Consensus 228 ~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~ 306 (1141)
T KOG0018|consen 228 CIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLE 306 (1141)
T ss_pred hHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHH
Q ss_pred h----HHHHHHHHHHHHHHHHHHHHHH---------HHHhhcCCCceee
Q 006645 588 T----METLQKELELLQRQKAASEQAA---------LNAKRQSSGGMWG 623 (637)
Q Consensus 588 ~----~q~~~~e~~~~~~~~~~~~~~~---------~~~~r~~~~g~w~ 623 (637)
. ++.+++..+.+.+....++.++ -+.+.+.....||
T Consensus 307 ~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg 355 (1141)
T KOG0018|consen 307 EIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERG 355 (1141)
T ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 490
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.33 E-value=43 Score=35.89 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred CchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 006645 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT---DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKL 586 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~---~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~l 586 (637)
+..+++-..-+|-+.-.++..+.+-.++..|+.+..++.++.+ ++.+..+..++...+-+...-+++.-+..+++|-
T Consensus 246 ~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~ 325 (622)
T COG5185 246 KLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS 325 (622)
T ss_pred cCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred Hh-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 006645 587 QT-----------METLQKELELLQRQKAASEQAAL 611 (637)
Q Consensus 587 q~-----------~q~~~~e~~~~~~~~~~~~~~~~ 611 (637)
++ .+.+|.|++.|+.+.+.+.-|++
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 491
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.29 E-value=42 Score=32.87 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006645 534 KLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRC-FKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQAALN 612 (637)
Q Consensus 534 ~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~-~~le~~~~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~~~ 612 (637)
...+..|...+..++..+..+.++++.+..+-...|... .+|..-..+-+.-+...-+++.....++++..++.++..+
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhc
Q 006645 613 AKRQ 616 (637)
Q Consensus 613 ~~r~ 616 (637)
.+.+
T Consensus 215 ~~~~ 218 (221)
T PF05700_consen 215 LKEN 218 (221)
T ss_pred Hhcc
No 492
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.28 E-value=25 Score=32.18 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQ 584 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~ 584 (637)
.+++.|.-|+ ..+.........+.+.+.|+.++.+++.++..++++++.++.+++.-++.+..|-....+.++
T Consensus 81 tl~~vI~fLq-~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 81 TLQDVISFLQ-NLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred CHHHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=77.27 E-value=30 Score=33.47 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHh-HHHHHHHHHHHHH
Q 006645 526 LESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLE---VDVAELRQKLQT-METLQKELELLQR 601 (637)
Q Consensus 526 le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le---~~~~el~~~lq~-~q~~~~e~~~~~~ 601 (637)
++.++++.-.+.+.|..++..++ +++..-+.+||+.-+-+..+|| +-..+.|+.+.- .-+||++.++++.
T Consensus 162 l~~eLqkr~~~v~~l~~q~~k~~------~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~ 235 (289)
T COG4985 162 LERELQKRLLEVETLRDQVDKMV------EQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQT 235 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 006645 602 QKAASEQAA 610 (637)
Q Consensus 602 ~~~~~~~~~ 610 (637)
++..+.+++
T Consensus 236 ~L~~L~~e~ 244 (289)
T COG4985 236 ELDALRAEL 244 (289)
T ss_pred HHHHHhhhh
No 494
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.20 E-value=41 Score=35.34 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred ccCCCCCchhHHHHh-HHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 006645 504 LISKHPETTEHLIAT-LKAEKEELESSLSKEKLQSIQLKQDLTE--AESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVA 580 (637)
Q Consensus 504 ~~~~~~~~~e~~~~~-l~~~~~~le~~~~e~~~~~~~l~~~l~e--~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~ 580 (637)
++.......+..+.. |+.+..++++..++++.++..|.+-+.+ .+..+...-+..++-...| ++-....+.+|.
T Consensus 89 ~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKl---relv~pmekeI~ 165 (542)
T KOG0993|consen 89 SQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKL---RELVTPMEKEIN 165 (542)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHH---HHHHhhHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhcCCCceeeeccCCCCCCC
Q 006645 581 ELRQKLQTMETLQKELE--------------LLQRQKAASEQAALNAKRQSSGGMWGWLAGAPPTQN 633 (637)
Q Consensus 581 el~~~lq~~q~~~~e~~--------------~~~~~~~~~~~~~~~~~r~~~~g~w~~~~~~~~~~~ 633 (637)
+|..+|...+++.+|++ .+..=-+-...+|+..++-.|.|+ =+|+|-+||
T Consensus 166 elk~kl~~aE~~i~El~k~~~h~a~slh~~t~lL~L~RD~s~~l~~leel~gd~g---ps~d~Fa~s 229 (542)
T KOG0993|consen 166 ELKKKLAKAEQRIDELSKAKHHKAESLHVFTDLLNLARDKSEQLRQLEELDGDAG---PSGDDFAQS 229 (542)
T ss_pred HHHHHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHhcCCchhhhHHHHhccCCC---CCcchhhhc
No 495
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.19 E-value=33 Score=40.12 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred chhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHH
Q 006645 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTME 590 (637)
Q Consensus 511 ~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~q 590 (637)
+++..++.|.+++++++....++-+..-.|.-++.+.+.++..-+++-+..-+.|+.-....++.++++.++.-+-+.+.
T Consensus 276 ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~ 355 (1200)
T KOG0964|consen 276 ELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLV 355 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006645 591 TLQKELELLQRQKAASEQAALNAK 614 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~~~~~~~~~~ 614 (637)
+-++........+....+.|..++
T Consensus 356 ~ee~~~~~rl~~l~~~~~~l~~Kq 379 (1200)
T KOG0964|consen 356 DEEKRLKKRLAKLEQKQRDLLAKQ 379 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
No 496
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=77.16 E-value=68 Score=32.66 Aligned_cols=99 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh---
Q 006645 517 ATLKAEKEELESSLSK-----EKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT--- 588 (637)
Q Consensus 517 ~~l~~~~~~le~~~~e-----~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~--- 588 (637)
.......+++.+.+++ ++.-..+.+.+-.+........+--|.+++.+|++......+|-+.-.+|.+++-.
T Consensus 72 ~larsKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~e 151 (391)
T KOG1850|consen 72 ELARSKLEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGE 151 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006645 589 -METLQKELELLQRQKAASEQAALNAKRQ 616 (637)
Q Consensus 589 -~q~~~~e~~~~~~~~~~~~~~~~~~~r~ 616 (637)
++++++.++++.+++. +.+|+..++-+
T Consensus 152 Qy~~re~hidk~~e~ke-l~~ql~~aKlq 179 (391)
T KOG1850|consen 152 QYEEREKHIDKQIQKKE-LWEQLGKAKLQ 179 (391)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhHHHHH
No 497
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.08 E-value=48 Score=37.44 Aligned_cols=104 Identities=16% Similarity=0.075 Sum_probs=0.0
Q ss_pred CCchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 006645 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQT 588 (637)
Q Consensus 509 ~~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~ 588 (637)
+...+.......+-..+++..+++....++++...+.+++.+..-.+..++.++..+..++.+...--+++.+..++++.
T Consensus 132 ~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~ 211 (716)
T KOG4593|consen 132 RNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQE 211 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006645 589 METLQKELELLQRQKAASEQAALN 612 (637)
Q Consensus 589 ~q~~~~e~~~~~~~~~~~~~~~~~ 612 (637)
.++...++-+-.++.+..++++..
T Consensus 212 ~~~~l~e~~~~~qq~a~~~~ql~~ 235 (716)
T KOG4593|consen 212 LQASLEERADHEQQNAELEQQLSL 235 (716)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHh
No 498
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.08 E-value=37 Score=36.74 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred CchhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhH
Q 006645 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTM 589 (637)
Q Consensus 510 ~~~e~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~~el~~~lq~~ 589 (637)
++....+..++++.+.+-.++..-+.++..|.-+|-+++..+..+.-|..+....|++--.+-.+++.|..|++.|--+.
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 006645 590 ETLQKELELLQRQKA 604 (637)
Q Consensus 590 q~~~~e~~~~~~~~~ 604 (637)
.+...|.|+-.+.++
T Consensus 288 m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 288 MQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHhhc
No 499
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=77.06 E-value=60 Score=29.80 Aligned_cols=92 Identities=7% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHh-HH
Q 006645 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRC--FKLEVDVAELRQKLQT-ME 590 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~--~~le~~~~el~~~lq~-~q 590 (637)
.+...++++...+...+.+.+........-..+.++++++...+.+..+.+-..+-... .+.....++|..-|.+ .+
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~ 113 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIE 113 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 006645 591 TLQKELELLQRQKAA 605 (637)
Q Consensus 591 ~~~~e~~~~~~~~~~ 605 (637)
+..+...+++.++.+
T Consensus 114 ~~~~~~~~~~~~~~~ 128 (155)
T PRK06569 114 DINLAAKQFRTNKSE 128 (155)
T ss_pred HHHHHHHHHHHhHHH
No 500
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=77.06 E-value=50 Score=33.83 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH-------
Q 006645 514 HLIATLKAEKEELESSLSK-------EKLQSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDV------- 579 (637)
Q Consensus 514 ~~~~~l~~~~~~le~~~~e-------~~~~~~~l~~~l~e~e~~~~~~~~elq~~~~ql~~~q~~~~~le~~~------- 579 (637)
++|.-|+++.+.--+...+ .+.+.++|+|||+-..++....+.+....+-||.++..|..++---+
T Consensus 118 Kli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka 197 (561)
T KOG1103|consen 118 KLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKA 197 (561)
T ss_pred HHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHhhcC
Q 006645 580 ---------------------------------AELRQKLQTMETLQKELELLQRQKAASEQAA-LNAKRQS 617 (637)
Q Consensus 580 ---------------------------------~el~~~lq~~q~~~~e~~~~~~~~~~~~~~~-~~~~r~~ 617 (637)
+|-.+-||-.-+.++.++++.-+...+.-++ ++..||+
T Consensus 198 ~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K 269 (561)
T KOG1103|consen 198 LLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQK 269 (561)
T ss_pred HHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!