Query 006647
Match_columns 637
No_of_seqs 192 out of 364
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 1.6E-54 5.3E-59 416.0 9.0 166 363-543 8-179 (180)
2 2yu6_A YTH domain-containing p 100.0 1.1E-52 3.7E-57 389.5 10.8 138 379-523 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 96.2 0.009 3.1E-07 55.4 7.3 125 384-520 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 94.9 0.046 1.6E-06 50.7 6.9 126 383-519 4-147 (147)
5 2eve_A Hypothetical protein ps 61.3 15 0.0005 35.1 6.3 131 384-523 2-152 (157)
6 2ar1_A Hypothetical protein; s 37.7 47 0.0016 32.0 5.7 130 382-520 18-166 (172)
7 3eop_A Thymocyte nuclear prote 30.5 88 0.003 30.4 6.3 131 384-521 2-168 (176)
8 3goe_A DNA repair protein RAD6 13.5 1.4E+02 0.0047 25.9 3.3 45 385-435 11-55 (82)
9 1zce_A Hypothetical protein AT 10.9 2.6E+02 0.0088 26.5 4.6 129 384-522 3-139 (155)
10 2jvf_A De novo protein M7; tet 10.6 42 0.0014 28.8 -0.8 14 498-511 9-22 (96)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-54 Score=415.98 Aligned_cols=166 Identities=31% Similarity=0.539 Sum_probs=156.2
Q ss_pred cCCCCCccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 006647 363 SLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 442 (637)
Q Consensus 363 ~~~~~~~qyN~~~f~~~y~~ARFFIIKS~nedNIhkSIKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SG~ 442 (637)
...+++++||+.++.. +++|||||||++++|||+|++||||+||++||++|++||++++ +||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~------~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR------SVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSS------CEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCC------eEEEEEEeCCCCc
Confidence 3466789999988774 8999999999999999999999999999999999999999984 8999999999999
Q ss_pred eeEEEEecCCCCCCCCchhhc------cccCCCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHH
Q 006647 443 FVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKL 516 (637)
Q Consensus 443 FqG~AeM~SpVDf~ks~d~Wq------qdKw~G~F~VeWi~vkDVPf~~lrHI~N~nNeNKPVt~SRDgQEIe~e~G~qL 516 (637)
|||||||+|+++++....+|+ +++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999988888996 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccchhhhHHHHHHH
Q 006647 517 IKIFKDHPSKTCILDDFGFYETRQKTI 543 (637)
Q Consensus 517 LkIF~~~~~~tSIlDDF~~Ye~rek~~ 543 (637)
|+||+.+ ++|++|+.|+|+.
T Consensus 160 ~~lf~~~-------~~~~~~~~~~~~~ 179 (180)
T 2yud_A 160 CLLFPPD-------ESIDLYQVIHKMR 179 (180)
T ss_dssp HHHSCCC-------SSSCSHHHHHHHH
T ss_pred HHhcccC-------cCccHHHHHHhhc
Confidence 9999886 5799999999874
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-52 Score=389.48 Aligned_cols=138 Identities=28% Similarity=0.552 Sum_probs=132.6
Q ss_pred CCCCceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCC
Q 006647 379 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 458 (637)
Q Consensus 379 ~y~~ARFFIIKS~nedNIhkSIKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks 458 (637)
...++|||||||+++||||+|++||||+||++||++|++||++++ +||||||||+||||||||+|++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~------~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS------CEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCC------cEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 357899999999999999999999999999999999999999984 99999999999999999999999999 56
Q ss_pred chhhccccCCCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 006647 459 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 523 (637)
Q Consensus 459 ~d~WqqdKw~G~F~VeWi~vkDVPf~~lrHI~N~nNeNKPVt~SRDgQEIe~e~G~qLLkIF~~~ 523 (637)
..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999864
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.24 E-value=0.009 Score=55.37 Aligned_cols=125 Identities=11% Similarity=0.170 Sum_probs=81.5
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCC--------CCeeEEEEecCCCCC
Q 006647 384 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 455 (637)
Q Consensus 384 RFFIIKS~nedNIhkSIKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~S--------G~FqG~AeM~SpVDf 455 (637)
+|.|+|| +.|++...++.|+|-. .+..+..-++ -..+..+||++-+.. ..|.|+|++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~-------mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR-------VKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT-------CCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh-------CCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 6899998 8999999999999977 5554432221 123578888887765 799999999985532
Q ss_pred CCCchhhccccC-----CCccceeEEEeecCCCccccccccCCCCC-----CceeecCCCcccchHHHHHHHHHH
Q 006647 456 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKHITLENNEN-----KPVTNSRDTQEIKLEQGLKLIKIF 520 (637)
Q Consensus 456 ~ks~d~WqqdKw-----~G~F~VeWi~vkDVPf~~lrHI~N~nNeN-----KPVt~SRDgQEIe~e~G~qLLkIF 520 (637)
+.+ .+|-..+| --...|+++.+..|+++.++. .+.+=.| ..+ .-+--++|..+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 12222222 124568898889998887664 3332111 111 02337999999999998764
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=94.94 E-value=0.046 Score=50.71 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=77.7
Q ss_pred ceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeEEEEecCCCC--
Q 006647 383 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVD-- 454 (637)
Q Consensus 383 ARFFIIKS~nedNIhkSIKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN------~SG~FqG~AeM~SpVD-- 454 (637)
.+|.|+|+. ++++...++.|+|-. .+..+.+-+ .- ..+...||+... .-..|.|+|++++..-
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr---~M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN---KV----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH---hC----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999886 667999999999966 444333222 11 234677777332 3458999999998542
Q ss_pred ---CCCCchhhccccCCCccceeEEEe--ecCCCcccc----ccccCCC-CCCceeecCCCcccchHHHHHHHHH
Q 006647 455 ---FNKNVEYWQQDKWTGCFPVKWHIV--KDVPNSLLK----HITLENN-ENKPVTNSRDTQEIKLEQGLKLIKI 519 (637)
Q Consensus 455 ---f~ks~d~WqqdKw~G~F~VeWi~v--kDVPf~~lr----HI~N~nN-eNKPVt~SRDgQEIe~e~G~qLLkI 519 (637)
|+....|...+..--..+|+++.. ..||...|+ +|++.-. .+.-|..+ -++|..+....||++
T Consensus 75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHTC
T ss_pred CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHhC
Confidence 222222221221223688999987 888887777 2222211 12224555 899999998888853
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=61.29 E-value=15 Score=35.10 Aligned_cols=131 Identities=14% Similarity=0.330 Sum_probs=76.7
Q ss_pred eEEEEec----CChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCC-----C
Q 006647 384 KFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP-----V 453 (637)
Q Consensus 384 RFFIIKS----~nedNIhkSIKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SG~FqG~AeM~Sp-----V 453 (637)
+|.++|| |+.||+.. -+...|.-..+-..| | -.++. ..+...||+.-| ....+.|+||+++. .
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqAr-N-~mr~M----k~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQAR-N-FLRTM----AEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHH-H-HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHH-H-HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 67888887 555789755442211 1 11222 123566667666 88999999999984 3
Q ss_pred CCCCCchhhcc------ccCCCccceeEEEe--ecCCCccccccccCCCCCCceee-cC-CCcccchHHHHHHHHHHhcC
Q 006647 454 DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTN-SR-DTQEIKLEQGLKLIKIFKDH 523 (637)
Q Consensus 454 Df~ks~d~Wqq------dKw~G~F~VeWi~v--kDVPf~~lrHI~N~nNeNKPVt~-SR-DgQEIe~e~G~qLLkIF~~~ 523 (637)
.|+....||.. -+|. .+.|+-+.. +-|+..++|... ++.+-.-|+. +| --|-|..++-..||+|=.++
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~~ 152 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLEH 152 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC--
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHhhhh
Confidence 45566667732 2443 445555443 445555555432 2333344444 23 35788888988998885544
No 6
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=37.66 E-value=47 Score=32.02 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=68.8
Q ss_pred CceEEEEec----CChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCC---
Q 006647 382 DAKFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPV--- 453 (637)
Q Consensus 382 ~ARFFIIKS----~nedNIhkSIKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SG~FqG~AeM~SpV--- 453 (637)
...|.++|| ++.||+.. -....|.-..+-..+- -.++. ..+...||+.-| .-..+.|+|++++..
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M----k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM----SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 347999997 67888887 4447897554432211 11222 123555666555 889999999999842
Q ss_pred --CCCCCchhhcc------ccCCCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHH
Q 006647 454 --DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIF 520 (637)
Q Consensus 454 --Df~ks~d~Wqq------dKw~G~F~VeWi~v--kDVPf~~lrHI~N~nNeNKPVt~SR-DgQEIe~e~G~qLLkIF 520 (637)
.|+....||.. -+|. .+.|+-+.. +-|+...|+... ++.+-.-|+.+| --|-|..++-..||++-
T Consensus 91 ~t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 166 (172)
T 2ar1_A 91 FTALDKTSEYFDPKATKEKNPWK-MVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMN 166 (172)
T ss_dssp GGGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHH
T ss_pred cccccccCcccCcccCCCCCCeE-EEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhh
Confidence 35555667742 1342 344444432 344444444321 122222222222 23455555555555554
No 7
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=30.51 E-value=88 Score=30.37 Aligned_cols=131 Identities=17% Similarity=0.249 Sum_probs=78.5
Q ss_pred eEEEEec-------------CChhHHHHH-hhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEE
Q 006647 384 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAE 448 (637)
Q Consensus 384 RFFIIKS-------------~nedNIhkS-IKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SG~FqG~Ae 448 (637)
+|.++|| |+.||+... .+...|.=..+-..|-. .|+- ..+...||+--| +--.+.|+|+
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M----k~GD~~fFYHSnck~pgIvGi~e 75 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM----KLGEEAFFYHSNCKEPGIAGLMK 75 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC----CTTCEEEEEECCSSSCEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhc----CCCCEEEEEecCCCCCeEEEEEE
Confidence 5777885 677888765 34567886654322211 1222 123455566545 7889999999
Q ss_pred ecCCC-----CCCCCchhhcc------ccCCCccceeEEEe--ecCCCccccccc-------cCCCCCCceeecC-CCcc
Q 006647 449 MAGPV-----DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHIT-------LENNENKPVTNSR-DTQE 507 (637)
Q Consensus 449 M~SpV-----Df~ks~d~Wqq------dKw~G~F~VeWi~v--kDVPf~~lrHI~-------N~nNeNKPVt~SR-DgQE 507 (637)
++... .|+....||.. -+|. .+.|+-+.. +-|+..++|... -++.+..-|+.+| --|-
T Consensus 76 Vv~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~P 154 (176)
T 3eop_A 76 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQP 154 (176)
T ss_dssp EEEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEE
T ss_pred EeeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCcee
Confidence 99742 35666667642 2563 466666654 346666777552 1343444455555 4577
Q ss_pred cchHHHHHHHHHHh
Q 006647 508 IKLEQGLKLIKIFK 521 (637)
Q Consensus 508 Ie~e~G~qLLkIF~ 521 (637)
|..++-..||++-+
T Consensus 155 Vt~~ew~~I~~l~~ 168 (176)
T 3eop_A 155 LTQEEFDFVLSLEE 168 (176)
T ss_dssp ECHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHh
Confidence 77888888887754
No 8
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=13.55 E-value=1.4e+02 Score=25.88 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=32.9
Q ss_pred EEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEE
Q 006647 385 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLF 435 (637)
Q Consensus 385 FFIIKS~nedNIhkSIKygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfF 435 (637)
-.+++|.--+|++.+|+ ......+|-+||++++..+....|.|+|
T Consensus 11 ~~~~~~~~~~dl~f~I~------~~t~v~kLi~ayc~~~~I~~~~~IrllF 55 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIP------VDFTVKDLIKRYCTEVKISFHERIRLEF 55 (82)
T ss_dssp EEEEEESSSCCEEEEEE------TTSBHHHHHHHHHHHHTCCCCTTCEEEE
T ss_pred HHhhhccCCCCeEEEec------CCCCHHHHHHHHHHHcCCCcCceEEEEE
Confidence 35566666666664443 3455689999999999877777899988
No 9
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=10.85 E-value=2.6e+02 Score=26.52 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=69.8
Q ss_pred eEEEEec----CChhHHHHHhh-cCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCC
Q 006647 384 KFFVIKS----YSEDDVHKSIK-YSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 458 (637)
Q Consensus 384 RFFIIKS----~nedNIhkSIK-ygVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks 458 (637)
+|.++|| |+.||+...-. .-.|.--.+-..+ .-.++. ..+.-.||+--|.-..+.|+||+++....+.+
T Consensus 3 ~YWL~KSEP~~~Siddl~~~~~~~~~WdGVRNyqAr--N~mr~M----k~GD~~fFYHS~~~~gIvGi~eVv~e~ypD~t 76 (155)
T 1zce_A 3 NYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQAR--NNMRAM----KIGDKGFFYHSNEGLDVVGIVEVCALSHPDST 76 (155)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECCCCCCHHHH--HHHHTC----CTTCEEEEEETTTTCEEEEEEEEEEEEEECTT
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceecCcccHHHH--HHHHhc----cCCCEEEEEEeCCCCceEEEEEEeeeccCCCC
Confidence 5888887 56788877444 2569854432211 111222 12456666766788999999999986433222
Q ss_pred chhhccccCCCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHHhc
Q 006647 459 VEYWQQDKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIFKD 522 (637)
Q Consensus 459 ~d~WqqdKw~G~F~VeWi~v--kDVPf~~lrHI~N~nNeNKPVt~SR-DgQEIe~e~G~qLLkIF~~ 522 (637)
. +..-+| ..+.|+-+.. +-|+...+|.. -++.+-.-|+.+| --|-|..++-..||++-..
T Consensus 77 ~--~d~Prw-~~VdV~~v~~~~~pvtL~eLK~~-~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~~ 139 (155)
T 1zce_A 77 A--EGDLKW-DCVDIRAVCDMPQPVSLKDVKAN-PKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGGL 139 (155)
T ss_dssp S--TTCSSC-EEEEEEEEEEEEEEEEHHHHHHC-GGGTTCHHHHCSSCSEEEECHHHHHHHHHHTTC
T ss_pred c--CCCCCe-EEEEEEEccccCCcccHHHHhcC-CCcccCeeeeccCCCceeeCHHHHHHHHHhhCC
Confidence 1 111144 2455665532 34544444432 1222223333333 2466777777777777643
No 10
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=10.61 E-value=42 Score=28.75 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=11.7
Q ss_pred ceeecCCCcccchH
Q 006647 498 PVTNSRDTQEIKLE 511 (637)
Q Consensus 498 PVt~SRDgQEIe~e 511 (637)
-|++.||||||+.+
T Consensus 9 tikiqrdgqeieid 22 (96)
T 2jvf_A 9 TIKIQRDGQEIEID 22 (96)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEeeCCeEEEEE
Confidence 47889999999865
Done!