BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006648
(637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 15/232 (6%)
Query: 295 DRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLE 354
+ +Y S+ +A+ T L + Y GA+ S++ +TR LV+L +S R LE
Sbjct: 16 ENLYFQSMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLE 74
Query: 355 AAGWKVRTIQRIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNID 409
+V + + + + K +K W LT Y K +F+DAD L+L NID
Sbjct: 75 TVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANID 134
Query: 410 FLFGMPEISATGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFT 467
LF E+SA + G FNSGV V +PS T+ L+ +E S++GGDQG LN F+
Sbjct: 135 DLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFS 194
Query: 468 WWHR--IPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
W I KH+ F+ + ++FGA V+H+LG +KPW
Sbjct: 195 SWATTDIRKHLPFIYNLS-SISIYSYLPAFKVFGASAK---VVHFLGRVKPW 242
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 301 SVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKV 360
S+ +A+ T L + Y GA+ S++ +TR LV+L +S R LE +V
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 361 RTIQRIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMP 415
+ + + + K +K W LT Y K +F+DAD L+L NID LF
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 416 EISATGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR-- 471
E+SA + G FNSGV V +PS T+ L+ +E S++GGDQG LN F+ W
Sbjct: 120 ELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTD 179
Query: 472 IPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
I KH+ F+ + ++FGA V+H+LG +KPW
Sbjct: 180 IRKHLPFIYNL-SSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 301 SVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKV 360
S+ +A+ T L + Y GA+ S++ +TR LV+L +S R LE +V
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 361 RTIQRIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMP 415
+ + + + K +K W LT Y K +F+DAD L+L NID LF
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 416 EISATGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR-- 471
E+SA + G FNSGV V +PS T+ L+ +E S++GGDQG LN F+ W
Sbjct: 120 ELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTD 179
Query: 472 IPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
I KH+ F+ + ++FGA V+H+LG +KPW
Sbjct: 180 IRKHLPFIYNL-SSISIFSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 301 SVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKV 360
S+ +A+ T L + Y GA+ S++ +TR LV+L +S R LE +V
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 361 RTIQRIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMP 415
+ + + + K +K W LT Y K +F+DAD L+L NID LF
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 416 EISATGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR-- 471
E+SA + G FNSGV V +PS T+ L+ +E S++GGDQG LN F+ W
Sbjct: 120 ELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTD 179
Query: 472 IPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
I KH+ F+ + ++FGA V+H+LG +KPW
Sbjct: 180 IRKHLPFIYNL-SSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S+NGGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGM-KPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 108/226 (47%), Gaps = 23/226 (10%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHF----WFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
+ F+ + F K FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNLSSISIFSYLPAFKA-----FGANAK---VVHFLGQTKPW 240
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 63 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGM-KPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 183 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 220
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 10 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 68
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 69 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 128
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 129 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 188
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGM-KPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 189 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 226
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 108/226 (47%), Gaps = 23/226 (10%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHF----WFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
+ F+ + F K FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNLSSISIFSYLPAFKA-----FGANAK---VVHFLGQTKPW 240
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGM-KPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GGDQG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 106/222 (47%), Gaps = 15/222 (6%)
Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
+A+ T L + Y GA+ S++ ++R L +L +S R LE +V T+
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 365 RIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
+ + + K +K W LT Y K +F+DAD L+L NID LF E+SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 420 TGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
+ G FNSGV V +PS T+ L+ +E S++GG QG LN F W I KH
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKH 202
Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGM-KPW 516
+ F+ + + FGA+ V+H+LG KPW
Sbjct: 203 LPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 286 ELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETI 345
E +LP + KD ++ + + + T+ VCGA+A+ ++ SG L++ VD +
Sbjct: 567 ETSLPTQLKDN-FNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNL 625
Query: 346 S 346
+
Sbjct: 626 T 626
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 286 ELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETI 345
E +LP + KD ++ + + + T+ VCGA+A+ ++ SG L++ VD +
Sbjct: 567 ETSLPTQLKDN-FNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNL 625
Query: 346 S 346
+
Sbjct: 626 T 626
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 47/234 (20%)
Query: 380 NYSKFRLWQ-LTDYDKIIFIDADLLILRNIDFLF---------------------GMPEI 417
Y++ +L + + D DK++++D D+L+ ++ L+ G +
Sbjct: 83 TYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQK 142
Query: 418 SATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEF-ESYNG----GDQGYLNEVF------ 466
+ FN+GV++I + +E+ E Y DQ LN +F
Sbjct: 143 IGXADGEYYFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQYQDQDILNGLFKGGVCY 202
Query: 467 --TWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPWLCFRDYD 523
+ ++ P + F + WF + R P + V HY G KPW D
Sbjct: 203 ANSRFNFXPTNYAFXAN-WFASRHTDPLYRDRTNTVXP--VAVSHYCGPAKPW----HRD 255
Query: 524 CN-WNVDIFQEFASDVAHA-KWWRVHDAMPEQL--QQFCLLRSKQKAQLEFDRR 573
C W + F E A + + WR A+P ++ + L R ++K F R+
Sbjct: 256 CTAWGAERFTELAGSLTTVPEEWRGKLAVPHRMFSTKRMLQRWRRKLSARFLRK 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,887,673
Number of Sequences: 62578
Number of extensions: 848215
Number of successful extensions: 1945
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 20
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)