Query 006648
Match_columns 637
No_of_seqs 277 out of 1416
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u2u_A Glycogenin-1, GN-1, GN1 100.0 2.9E-42 9.8E-47 352.8 19.9 234 302-549 2-256 (263)
2 1ll2_A Glycogenin-1; protein-s 100.0 3.5E-40 1.2E-44 346.9 20.6 239 303-550 2-256 (333)
3 3tzt_A Glycosyl transferase fa 100.0 3.8E-32 1.3E-36 278.4 13.2 226 311-553 10-274 (276)
4 1g9r_A Glycosyl transferase; a 100.0 3.3E-29 1.1E-33 259.6 14.4 208 312-520 6-256 (311)
5 1qg8_A Protein (spore coat pol 70.6 18 0.00062 34.2 9.4 96 305-407 3-104 (255)
6 3f1y_A Mannosyl-3-phosphoglyce 67.6 28 0.00096 36.8 10.9 95 303-403 94-191 (387)
7 3bcv_A Putative glycosyltransf 63.2 9.5 0.00033 35.7 5.6 96 303-411 5-105 (240)
8 2d7i_A Polypeptide N-acetylgal 56.7 14 0.00046 40.9 6.2 102 301-412 110-218 (570)
9 1xhb_A Polypeptide N-acetylgal 53.7 21 0.00072 37.8 6.9 103 300-412 26-136 (472)
10 2p6w_A VP54, putative glycosyl 49.5 22 0.00075 35.0 5.5 58 382-442 63-135 (213)
11 1fo8_A Alpha-1,3-mannosyl-glyc 48.1 69 0.0023 33.5 9.6 92 321-412 16-120 (343)
12 3ckj_A Putative uncharacterize 40.2 75 0.0026 32.0 8.2 101 303-411 48-153 (329)
13 2ffu_A Ppgalnact-2, polypeptid 38.0 82 0.0028 33.6 8.5 103 300-412 63-168 (501)
14 2z86_A Chondroitin synthase; G 37.1 78 0.0027 34.6 8.4 95 303-407 93-190 (625)
15 1o7q_A N-acetyllactosaminide a 32.7 35 0.0012 35.3 4.3 167 302-481 47-263 (289)
16 1s4n_A Glycolipid 2-alpha-mann 21.4 2.3E+02 0.0079 30.0 8.1 111 301-413 25-168 (348)
17 2z86_A Chondroitin synthase; G 20.9 2.8E+02 0.0097 30.1 9.2 97 302-411 374-475 (625)
No 1
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=100.00 E-value=2.9e-42 Score=352.79 Aligned_cols=234 Identities=30% Similarity=0.452 Sum_probs=189.3
Q ss_pred CCCEEEEEEeecCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEeeccCCccc-----cccc
Q 006648 302 VHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAE-----KDAY 376 (637)
Q Consensus 302 ~~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns~~dlVILvtd~ISee~r~~Lk~~g~~V~~I~~I~~P~~~-----~~~~ 376 (637)
..++||||+++ |++|++||+|+++||+++|+++++++|++++++++.++.|++.|.+++.|+.+..+... ....
T Consensus 2 ~~~~AyvTl~t-d~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~ 80 (263)
T 3u2u_A 2 MTDQAFVTLTT-NDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPE 80 (263)
T ss_dssp TTTEEEEEEES-SHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTT
T ss_pred CcceEEEEEEE-CHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcc
Confidence 45899999775 68999999999999999999999999999999999999999999999999887654321 1111
Q ss_pred cchhHHHHHHcccCCCceEEEecccccccCCchhhhCCCCeeeecCC--CCcccceEEEEecCHHHHHHHHHHHHhcCCC
Q 006648 377 NEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNN--GTMFNSGVMVIEPSSCTFQLLMDHINEFESY 454 (637)
Q Consensus 377 ~~~tysKL~Iw~LtdYDRVLYLDAD~LVL~nLDeLFdlp~IaAv~D~--~~yFNSGVMVInPs~~~fe~L~e~l~~~~sy 454 (637)
...+|+||++|++++||||||||+|++|++|||+||+++.++|+++. +.|||||||||+|+..+++++++.+.+..++
T Consensus 81 ~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~ 160 (263)
T 3u2u_A 81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSF 160 (263)
T ss_dssp GGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCT
T ss_pred hhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCC
Confidence 23589999999999999999999999999999999999999999874 5899999999999999999999999877788
Q ss_pred CCCChhHHHHhccc------ceecCCccCccccc-cCCChHHHHhhhhcccCCCCCCeEEEEecC-CCCCCCCCCCCCCc
Q 006648 455 NGGDQGYLNEVFTW------WHRIPKHMNFLKHF-WFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPWLCFRDYDCNW 526 (637)
Q Consensus 455 ~~~DQdiLN~vF~~------w~~LP~rYN~l~~~-w~~~~~~~~~~k~e~f~~~~~~~kIIHF~G-~KPW~~~~~ydcnW 526 (637)
.++|||+||.+|.. ++.||.+||++... +.. . +.+. .+ .++++||||+| .|||+... +.
T Consensus 161 ~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~-~---~~~~--~~---~~~~~IIHf~g~~KPW~~~~----~~ 227 (263)
T 3u2u_A 161 DGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSY-L---PAFK--VF---GASAKVVHFLGRVKPWNYTY----DP 227 (263)
T ss_dssp TSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSS-H---HHHH--HH---GGGCSEEECCSSSCGGGSEE----ET
T ss_pred CcccHHHHHHHhccccccCeeEeCCcccccccchhccc-c---HHHH--hh---cCCeEEEEECCCCcCCCCCC----CC
Confidence 99999999999984 47999999998742 221 1 1111 11 24689999999 99999642 22
Q ss_pred cccc----ccccc--chhHHhhHHHHHhh
Q 006648 527 NVDI----FQEFA--SDVAHAKWWRVHDA 549 (637)
Q Consensus 527 n~~~----~~~~~--sd~~h~~WW~vyd~ 549 (637)
..+. ..... .+++-+.||++|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~ww~~~~~ 256 (263)
T 3u2u_A 228 KTKSVKSEAHDPNMTHPEFLILWWNIFTT 256 (263)
T ss_dssp TTTEEECCSSCGGGSSTHHHHHHHHHHHH
T ss_pred CCCcccccCCCcchhHHHHHHHHHHHHHh
Confidence 1111 00111 15678999999986
No 2
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=100.00 E-value=3.5e-40 Score=346.89 Aligned_cols=239 Identities=29% Similarity=0.459 Sum_probs=188.6
Q ss_pred CCEEEEEEeecCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEeeccCCcccc-----cccc
Q 006648 303 HREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEK-----DAYN 377 (637)
Q Consensus 303 ~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns~~dlVILvtd~ISee~r~~Lk~~g~~V~~I~~I~~P~~~~-----~~~~ 377 (637)
+|+||||+++ |++|+++++|+++||++++++++++||++++++++.++.|++.+.+++.|+.+..+.... ....
T Consensus 2 s~~a~vt~~~-d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~ 80 (333)
T 1ll2_A 2 TDQAFVTLTT-NDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL 80 (333)
T ss_dssp CSEEEEEEES-SHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred CceEEEEEEe-CHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccch
Confidence 6899999765 689999999999999999999999999999999999999999999999988765543211 1223
Q ss_pred chhHHHHHHcccCCCceEEEecccccccCCchhhhCCCCeeeecCC--CCcccceEEEEecCHHHHHHHHHHHHhcCCCC
Q 006648 378 EWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNN--GTMFNSGVMVIEPSSCTFQLLMDHINEFESYN 455 (637)
Q Consensus 378 ~~tysKL~Iw~LtdYDRVLYLDAD~LVL~nLDeLFdlp~IaAv~D~--~~yFNSGVMVInPs~~~fe~L~e~l~~~~sy~ 455 (637)
..+|+||++|+|++||||||||||+||++||++||+++.++|+++. +.|||||||||+|+..+++++++.+.+...+.
T Consensus 81 ~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~~~~~~~l~~~~~~~~~~~ 160 (333)
T 1ll2_A 81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD 160 (333)
T ss_dssp HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999999999999873 58999999999999999999999998777889
Q ss_pred CCChhHHHHhcccc------eecCCccCccccccCCChHHHHhhhhcccCCCCCCeEEEEecC-CCCCCCCCCC--CCCc
Q 006648 456 GGDQGYLNEVFTWW------HRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPWLCFRDY--DCNW 526 (637)
Q Consensus 456 ~~DQdiLN~vF~~w------~~LP~rYN~l~~~w~~~~~~~~~~k~e~f~~~~~~~kIIHF~G-~KPW~~~~~y--dcnW 526 (637)
++|||+||.+|..| ..||.+||++....... .+..+ .+ .++++||||+| .|||+..... ..-+
T Consensus 161 ~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~---~p~~~--~~---~~~~~IiHf~g~~KPW~~~~~~~~~~~~ 232 (333)
T 1ll2_A 161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY---LPAFK--AF---GANAKVVHFLGQTKPWNYTYDTKTKSVR 232 (333)
T ss_dssp SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHT---HHHHH--HH---GGGCSEEECCSSCCGGGSCEETTTTEEC
T ss_pred CCCHHHHHHHHHhhcccCccccCCcHHhcccccchhc---cHHHH--hh---cCCCEEEEECCCCCCCCCCCCCCccccc
Confidence 99999999999966 79999999987531110 11111 11 24689999999 9999875321 1000
Q ss_pred cccccccccchhHHhhHHHHHhhc
Q 006648 527 NVDIFQEFASDVAHAKWWRVHDAM 550 (637)
Q Consensus 527 n~~~~~~~~sd~~h~~WW~vyd~m 550 (637)
-..+......+.++++||++|+++
T Consensus 233 ~~~~~~~~~~~~~~~~WW~~~~~~ 256 (333)
T 1ll2_A 233 SEGHDPTMTHPQFLNVWWDIFTTS 256 (333)
T ss_dssp --------CCHHHHHHHHHHHHHT
T ss_pred cccccccccHHHHHHHHHHHHHhh
Confidence 000000000246789999999975
No 3
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=99.97 E-value=3.8e-32 Score=278.39 Aligned_cols=226 Identities=17% Similarity=0.219 Sum_probs=153.0
Q ss_pred eecCcchHHHHHHHHHHHHHhCCCCcEEE-EEcCCCCHHHHHHHHH----cCCEEEEEeeccCCcc---ccccccchhHH
Q 006648 311 LHSAHVYVCGAIAAAQSIRMSGSTRDLVI-LVDETISAYHRSGLEA----AGWKVRTIQRIRNPKA---EKDAYNEWNYS 382 (637)
Q Consensus 311 Ltsdd~YL~gAiVL~~SLr~~ns~~dlVI-Lvtd~ISee~r~~Lk~----~g~~V~~I~~I~~P~~---~~~~~~~~tys 382 (637)
+++|++|+.++.|+++||++++++.++.+ +++++++++.++.|++ .+.++..+..-..... ....++..+|+
T Consensus 10 ~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~ 89 (276)
T 3tzt_A 10 LTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVTDRYPKEMYY 89 (276)
T ss_dssp EECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------CHHHHH
T ss_pred EEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCccccccCHHHHH
Confidence 46689999999999999999998655422 4467899998877765 4677666543211111 12345567999
Q ss_pred HHHHcccC--CCceEEEecccccccCCchhhhCCC----CeeeecCC-----------------CCcccceEEEEecCHH
Q 006648 383 KFRLWQLT--DYDKIIFIDADLLILRNIDFLFGMP----EISATGNN-----------------GTMFNSGVMVIEPSSC 439 (637)
Q Consensus 383 KL~Iw~Lt--dYDRVLYLDAD~LVL~nLDeLFdlp----~IaAv~D~-----------------~~yFNSGVMVInPs~~ 439 (637)
||+++++. +|+||||||+|+||++||++||+++ .+||+++. ..|||||||||+++.+
T Consensus 90 rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~linl~~~ 169 (276)
T 3tzt_A 90 RLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLINLKRA 169 (276)
T ss_dssp HHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEEEEHHHH
T ss_pred HHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEEEEHHHH
Confidence 99999983 6999999999999999999999987 37887651 3799999999999886
Q ss_pred HH----HHHHHHHHhc-CCCCCCChhHHHHhcc-cceecCC-ccCccccccCCChHHHHhhhhcccCCCCCCeEEEEecC
Q 006648 440 TF----QLLMDHINEF-ESYNGGDQGYLNEVFT-WWHRIPK-HMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG 512 (637)
Q Consensus 440 ~f----e~L~e~l~~~-~sy~~~DQdiLN~vF~-~w~~LP~-rYN~l~~~w~~~~~~~~~~k~e~f~~~~~~~kIIHF~G 512 (637)
+. +++++.+++. .++.++|||+||.+|. +|+.||. +||++.++... ..........+....++++||||+|
T Consensus 170 R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiHy~g 247 (276)
T 3tzt_A 170 REEIDPDEIFSFVEDNHMNLLLPDQDILNAMYGDRIYPLDDLIYNYDARNYSS--YLIRSKKQADLAWLMDHTVVLHFCG 247 (276)
T ss_dssp HHHCCHHHHHHHHHHC--------CHHHHHHHGGGEEEEEHHHHSEETTCHHH--HHHHTTTCCSHHHHHHHCCEEECCS
T ss_pred HhhhHHHHHHHHHHhccccccCCChhHHHHHHhCCEEECCchheeeecccchh--hhccccchhhhhhhccCCeEEEECC
Confidence 64 4566666543 4667899999999999 8999998 99998754210 0000000000111123689999999
Q ss_pred -CCCCCCCCCCCCCccccccccccchhHHhhHHHHHhhcHHH
Q 006648 513 -MKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQ 553 (637)
Q Consensus 513 -~KPW~~~~~ydcnWn~~~~~~~~sd~~h~~WW~vyd~mp~~ 553 (637)
.|||+.... ..+++.||++++...+.
T Consensus 248 ~~KPW~~~~~---------------~~~~~~w~~Y~~~~~~~ 274 (276)
T 3tzt_A 248 RDKPWKKNHR---------------NKFTSLYKHYMSLTKRY 274 (276)
T ss_dssp SCCTTSTTCC---------------STTHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCC---------------CchHHHHHHHHHHHHHh
Confidence 999985421 13578999988765443
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.96 E-value=3.3e-29 Score=259.56 Aligned_cols=208 Identities=21% Similarity=0.256 Sum_probs=147.8
Q ss_pred ecCcchHHHHHHHHHHH-HHhC-CCCcEEEEEcCCCCHHHHHHHHHc----CCEEEEEeeccC---Cccc-cccccchhH
Q 006648 312 HSAHVYVCGAIAAAQSI-RMSG-STRDLVILVDETISAYHRSGLEAA----GWKVRTIQRIRN---PKAE-KDAYNEWNY 381 (637)
Q Consensus 312 tsdd~YL~gAiVL~~SL-r~~n-s~~dlVILvtd~ISee~r~~Lk~~----g~~V~~I~~I~~---P~~~-~~~~~~~ty 381 (637)
++|++|+.++.|+++|| +++. ....++|+ +++++++.++.|++. +.++..++.-.. .... ...++..+|
T Consensus 6 ~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il-~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~y 84 (311)
T 1g9r_A 6 AADDNYAAYLCVAAKSVEAAHPDTEIRFHVL-DAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTY 84 (311)
T ss_dssp EECGGGHHHHHHHHHHHHHTCTTSCCEEEEE-ESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCCTTCCGGGG
T ss_pred ECCHhHHHHHHHHHHHHHHHcCCCCceEEEE-ECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccccccCCHHHH
Confidence 44889999999999999 5543 34555665 678999998888875 665554432110 0000 123456799
Q ss_pred HHHHHccc-CCCceEEEecccccccCCchhhhCCC----CeeeecC-----------------CCCcccceEEEEecCHH
Q 006648 382 SKFRLWQL-TDYDKIIFIDADLLILRNIDFLFGMP----EISATGN-----------------NGTMFNSGVMVIEPSSC 439 (637)
Q Consensus 382 sKL~Iw~L-tdYDRVLYLDAD~LVL~nLDeLFdlp----~IaAv~D-----------------~~~yFNSGVMVInPs~~ 439 (637)
+||+++++ ++||||||||||+||++||++||+++ .++|+++ ...|||||||||+++.+
T Consensus 85 ~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~linl~~~ 164 (311)
T 1g9r_A 85 ARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKW 164 (311)
T ss_dssp GGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEECHHHH
T ss_pred HHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeeeeeHHHH
Confidence 99999995 79999999999999999999999986 3777753 24699999999999865
Q ss_pred ----HHHHHHHHHHh-cCCCCCCChhHHHHhcc-cceecCCccCccccccCCChHHHHh----hhhcccCCCCCCeEEEE
Q 006648 440 ----TFQLLMDHINE-FESYNGGDQGYLNEVFT-WWHRIPKHMNFLKHFWFGDEEEVKQ----KKTRLFGADPPILYVLH 509 (637)
Q Consensus 440 ----~fe~L~e~l~~-~~sy~~~DQdiLN~vF~-~w~~LP~rYN~l~~~w~~~~~~~~~----~k~e~f~~~~~~~kIIH 509 (637)
.++++++.+.+ ..++.++|||+||.+|. +|+.||.+||++............. .....+.....+++|||
T Consensus 165 r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiH 244 (311)
T 1g9r_A 165 RRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSH 244 (311)
T ss_dssp TTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEE
T ss_pred HhcchHHHHHHHHHhccCcCccCCcCHHHHHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEE
Confidence 45677777765 34678899999999998 8999999999987532100000000 00000122245789999
Q ss_pred ecC-CCCCCCCC
Q 006648 510 YLG-MKPWLCFR 520 (637)
Q Consensus 510 F~G-~KPW~~~~ 520 (637)
|+| .|||+...
T Consensus 245 y~g~~KPW~~~~ 256 (311)
T 1g9r_A 245 YCGPAKPWHRDC 256 (311)
T ss_dssp CCSSCCTTSSSC
T ss_pred eCCcCCCCCCCC
Confidence 999 89998643
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=70.63 E-value=18 Score=34.16 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=51.5
Q ss_pred EEEEEEeecCcchHHHHHHHHHHHHHh-CCCCcEEEEEcCCCCHHHHHHHHHc--CCEEEEEeeccCCccc---cccccc
Q 006648 305 EAYATILHSAHVYVCGAIAAAQSIRMS-GSTRDLVILVDETISAYHRSGLEAA--GWKVRTIQRIRNPKAE---KDAYNE 378 (637)
Q Consensus 305 ~AYVTlLtsdd~YL~gAiVL~~SLr~~-ns~~dlVILvtd~ISee~r~~Lk~~--g~~V~~I~~I~~P~~~---~~~~~~ 378 (637)
...++.......|+.. ++.||... .+.+. +|+++++-++++.+.+++. ...++.+. .+... ...-..
T Consensus 3 vSViIp~yn~~~~l~~---~l~Sl~~q~~~~~e-iivvDd~S~d~t~~~~~~~~~~~~i~~i~---~~~~~~~~~~~n~G 75 (255)
T 1qg8_A 3 VSVIMTSYNKSDYVAK---SISSILSQTFSDFE-LFIMDDNSNEETLNVIRPFLNDNRVRFYQ---SDISGVKERTEKTR 75 (255)
T ss_dssp EEEEEEESSCTTTHHH---HHHHHHTCSCCCEE-EEEEECSCCHHHHHHHGGGGGSTTEEEEE---CCCCSHHHHHSSCH
T ss_pred EEEEEEcCCCHHHHHH---HHHHHHhccCCceE-EEEEECCCCchHHHHHHHHhhcCCEEEEe---cccccccccccccC
Confidence 4445545555556554 55666643 33333 5556777777777888765 22333222 22000 000001
Q ss_pred hhHHHHHHcccCCCceEEEecccccccCC
Q 006648 379 WNYSKFRLWQLTDYDKIIFIDADLLILRN 407 (637)
Q Consensus 379 ~tysKL~Iw~LtdYDRVLYLDAD~LVL~n 407 (637)
....+-...+....|-|++||+|.++..+
T Consensus 76 ~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~ 104 (255)
T 1qg8_A 76 YAALINQAIEMAEGEYITYATDDNIYMPD 104 (255)
T ss_dssp HHHHHHHHHHHCCCSEEEEEETTEEECTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCccChH
Confidence 12233344455678999999999999765
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=67.56 E-value=28 Score=36.78 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCEEEEEEeecCcchHHHHHHHHHHHHH-hCCCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEe--eccCCccccccccch
Q 006648 303 HREAYATILHSAHVYVCGAIAAAQSIRM-SGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ--RIRNPKAEKDAYNEW 379 (637)
Q Consensus 303 ~R~AYVTlLtsdd~YL~gAiVL~~SLr~-~ns~~dlVILvtd~ISee~r~~Lk~~g~~V~~I~--~I~~P~~~~~~~~~~ 379 (637)
++...|.-.+....++..++-.+.++.+ ....+. +|+++|+-++.+.+.+++.+.+++... .+..+.. ...
T Consensus 94 p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~E-IIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n-----~G~ 167 (387)
T 3f1y_A 94 LTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQ-ILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDA-----HGK 167 (387)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSE-EEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSC-----CSH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeE-EEEEcCcCCccHHHHHHHhCchhcccceeEecCCcc-----CCH
Confidence 3455555555555677766665555433 333444 455777777788889999888764321 1111111 011
Q ss_pred hHHHHHHcccCCCceEEEeccccc
Q 006648 380 NYSKFRLWQLTDYDKIIFIDADLL 403 (637)
Q Consensus 380 tysKL~Iw~LtdYDRVLYLDAD~L 403 (637)
....-.......+|-|+++|+|..
T Consensus 168 g~A~n~G~~~A~gd~i~~lDaD~~ 191 (387)
T 3f1y_A 168 GDAMWRALSVTRGDLVLYIDADTR 191 (387)
T ss_dssp HHHHHHHTTTCCSSEEEECCTTCS
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCC
Confidence 223344455567899999999998
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=63.18 E-value=9.5 Score=35.72 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=51.2
Q ss_pred CCEEEEEEeecCcchHHHHHHHHHHHHHh-CCCCcEEEEEcCCCCHHHHHHHHHc---CCEEEEEeeccCCccccccccc
Q 006648 303 HREAYATILHSAHVYVCGAIAAAQSIRMS-GSTRDLVILVDETISAYHRSGLEAA---GWKVRTIQRIRNPKAEKDAYNE 378 (637)
Q Consensus 303 ~R~AYVTlLtsdd~YL~gAiVL~~SLr~~-ns~~dlVILvtd~ISee~r~~Lk~~---g~~V~~I~~I~~P~~~~~~~~~ 378 (637)
++...++..+....|+. -++.||... .+++. +|+++++-++.+.+.+++. ..+++.+. .+...
T Consensus 5 p~vsViIp~yn~~~~l~---~~l~Sl~~q~~~~~e-iIvvDd~S~d~t~~~~~~~~~~~~~i~~i~---~~n~G------ 71 (240)
T 3bcv_A 5 PKVSVIVPIYNVEKYLD---QCVQALLAQTLSDIE-IILIDDESPDNCPKICDDYAAQYPNIKVIH---KKNAG------ 71 (240)
T ss_dssp CSEEEEEEESSCTTTHH---HHHHHHHTCSSSSEE-EEEEECCCSSSHHHHHHHHHHHCSSEEEEE---CCCCC------
T ss_pred CcEEEEEecCCCHHHHH---HHHHHHHhCcCCCeE-EEEEECCCCcCHHHHHHHHHhhCCCEEEEE---CCCCC------
Confidence 34555655565556665 455676643 33333 4456666555555555543 23333332 11110
Q ss_pred hhHHHHHHcccCCCceEEEecccccccCC-chhh
Q 006648 379 WNYSKFRLWQLTDYDKIIFIDADLLILRN-IDFL 411 (637)
Q Consensus 379 ~tysKL~Iw~LtdYDRVLYLDAD~LVL~n-LDeL 411 (637)
....+=...+....|-|++||+|.++..+ |..+
T Consensus 72 ~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l 105 (240)
T 3bcv_A 72 LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTM 105 (240)
T ss_dssp HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHH
Confidence 11223333444567899999999998665 3434
No 8
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=56.65 E-value=14 Score=40.88 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=55.8
Q ss_pred CCCCEEEEEEeecCcchHHHHHHHHHHHHHhCC-CCc-EEEEEcCCCCHHH-HHHHHHc---CCEEEEEeeccCCccccc
Q 006648 301 SVHREAYATILHSAHVYVCGAIAAAQSIRMSGS-TRD-LVILVDETISAYH-RSGLEAA---GWKVRTIQRIRNPKAEKD 374 (637)
Q Consensus 301 ~~~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns-~~d-lVILvtd~ISee~-r~~Lk~~---g~~V~~I~~I~~P~~~~~ 374 (637)
..++...|+..+. +. +..+.-++.||..... ... -+|+++++-++.+ .+.|+++ ...++.| ..+...
T Consensus 110 ~~P~vSVIIp~yN-e~-~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi---~~~~n~-- 182 (570)
T 2d7i_A 110 TLPNTSIIIPFHN-EG-WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRIL---RTKKRE-- 182 (570)
T ss_dssp SCCCEEEEEEESS-CC-HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEE---ECSSCC--
T ss_pred CCCCeEEEEEECC-CC-HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEE---ECCCCC--
Confidence 3456666655553 32 4555677788876544 332 2566776655555 5555543 2223222 222110
Q ss_pred cccchhHHHHHHcccCCCceEEEecccccccCC-chhhh
Q 006648 375 AYNEWNYSKFRLWQLTDYDKIIFIDADLLILRN-IDFLF 412 (637)
Q Consensus 375 ~~~~~tysKL~Iw~LtdYDRVLYLDAD~LVL~n-LDeLF 412 (637)
...-.+-...+...-|-|++||+|+++..+ |..|.
T Consensus 183 ---G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 183 ---GLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp ---CHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred ---CHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 112234444455567999999999999655 44444
No 9
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=53.72 E-value=21 Score=37.78 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCCCCEEEEEEeecCcchHHHHHHHHHHHHHhCC-CCcE-EEEEcCCCCH-HHHHHHHHc----CCEEEEEeeccCCccc
Q 006648 300 GSVHREAYATILHSAHVYVCGAIAAAQSIRMSGS-TRDL-VILVDETISA-YHRSGLEAA----GWKVRTIQRIRNPKAE 372 (637)
Q Consensus 300 ~~~~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns-~~dl-VILvtd~ISe-e~r~~Lk~~----g~~V~~I~~I~~P~~~ 372 (637)
...++...|...+... ...+.-++.||..... ...+ +|+++++-++ +..+.|+++ ..+++.|. .+...
T Consensus 26 ~~~p~vSVIIp~yN~~--~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~---~~~n~ 100 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEA--WSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIR---MEQRS 100 (472)
T ss_dssp SCCCCEEEEEEESSCC--HHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEE---CSSCC
T ss_pred cCCCCeEEEEEeCCCC--HHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEE---CCCCC
Confidence 3455666666666443 1334456788877543 3222 5556665443 354555432 21343332 22111
Q ss_pred cccccchhHHHHHHcccCCCceEEEecccccccCC-chhhh
Q 006648 373 KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRN-IDFLF 412 (637)
Q Consensus 373 ~~~~~~~tysKL~Iw~LtdYDRVLYLDAD~LVL~n-LDeLF 412 (637)
...-.+-...+....|-|++||+|+++..+ |..|.
T Consensus 101 -----G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll 136 (472)
T 1xhb_A 101 -----GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 136 (472)
T ss_dssp -----CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred -----ChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHH
Confidence 112233344455668999999999998765 44443
No 10
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=49.46 E-value=22 Score=35.02 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=35.6
Q ss_pred HHHHHcccCCCceEEEecccccccCCchhhhCCCC----------e--eeecC---CCCcccceEEEEecCHHHHH
Q 006648 382 SKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPE----------I--SATGN---NGTMFNSGVMVIEPSSCTFQ 442 (637)
Q Consensus 382 sKL~Iw~LtdYDRVLYLDAD~LVL~nLDeLFdlp~----------I--aAv~D---~~~yFNSGVMVInPs~~~fe 442 (637)
.|-.+-..++-+-+-|||+|.+|.. --|++|. + -+-.+ ..--+|+|+++|..+.-..+
T Consensus 63 IR~AM~khPeAEWfWWLDsDAlIMD---mnf~lPLe~yldl~~~NlvvHGw~e~~~~~~~lNtGvfL~~~~~~~ir 135 (213)
T 2p6w_A 63 IQQAAEKFPSTEWFLWLDSDVYVNP---KNKNKPITSFIDLSDPNILYHTFHEAPWGSYPINTGVKFVHKDALEIE 135 (213)
T ss_dssp HHHHHHHCTTCSEEEEECTTEEECG---GGTTSCGGGTCCCCCTTCCEEEECCTTTSSSSCCTTEEEEEGGGHHHH
T ss_pred HHHHHHHCCCceEEEEecCCceeec---CCCCCcHHHccccccCceeeccccccccccccccceeeeecccchhhh
Confidence 3444455689999999999999982 1233331 1 00011 11257999999987654433
No 11
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=48.09 E-value=69 Score=33.54 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCC--cEEEEEcCCCCHHHHHHHHHcCCEEEEEee--ccC----Cccccc-cccc----hhHHHHHHc
Q 006648 321 AIAAAQSIRMSGSTR--DLVILVDETISAYHRSGLEAAGWKVRTIQR--IRN----PKAEKD-AYNE----WNYSKFRLW 387 (637)
Q Consensus 321 AiVL~~SLr~~ns~~--dlVILvtd~ISee~r~~Lk~~g~~V~~I~~--I~~----P~~~~~-~~~~----~tysKL~Iw 387 (637)
+..++.||++..+.. ..+|+.+|+-.++.++.+++.+.++..+.. +.. +...+- .+.. ..+..=.++
T Consensus 16 l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~ia~h~~~al~~vf 95 (343)
T 1fo8_A 16 VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIF 95 (343)
T ss_dssp HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhHhHHHHHHHHHHH
Confidence 677888999876432 356667778788889988887644333311 110 000000 0000 011111234
Q ss_pred ccCCCceEEEecccccccCCchhhh
Q 006648 388 QLTDYDKIIFIDADLLILRNIDFLF 412 (637)
Q Consensus 388 ~LtdYDRVLYLDAD~LVL~nLDeLF 412 (637)
+...+++||+||-|+++-.+.=+.|
T Consensus 96 ~~~~~~~vIiLEDDl~~spdF~~y~ 120 (343)
T 1fo8_A 96 HNFNYPAAVVVEDDLEVAPDFFEYF 120 (343)
T ss_dssp TTSCCSEEEEEETTEEECTTHHHHH
T ss_pred HhccCCEEEEEcCCCeECHHHHHHH
Confidence 4447999999999999977654444
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=40.17 E-value=75 Score=32.03 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCEEEEEEeecCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHHcCCEEEE-Eeecc-CCccccccccch
Q 006648 303 HREAYATILHSAHVYVCGAIAAAQSIRMSG-STRDLVILVDETISAYHRSGLEAAGWKVRT-IQRIR-NPKAEKDAYNEW 379 (637)
Q Consensus 303 ~R~AYVTlLtsdd~YL~gAiVL~~SLr~~n-s~~dlVILvtd~ISee~r~~Lk~~g~~V~~-I~~I~-~P~~~~~~~~~~ 379 (637)
++...|.-.+....|+. -++.||.... +...-+|+++++-++.+.+.+++.+.++.. +..+. .+... ..
T Consensus 48 ~~vSViIp~yN~~~~l~---~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n~-----G~ 119 (329)
T 3ckj_A 48 RTISVVLPALDEEDTIG---SVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRP-----GK 119 (329)
T ss_dssp CCEEEEEEESSCTTTHH---HHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCC-----SH
T ss_pred CcEEEEEeeCCCHHHHH---HHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeeccCCCCC-----CH
Confidence 45555655565556654 4556666543 322235557777777788889988877543 22221 11110 11
Q ss_pred hHHHHHHcccCCCceEEEeccccc-ccCC-chhh
Q 006648 380 NYSKFRLWQLTDYDKIIFIDADLL-ILRN-IDFL 411 (637)
Q Consensus 380 tysKL~Iw~LtdYDRVLYLDAD~L-VL~n-LDeL 411 (637)
...+-...+....|-|+++|+|.+ +..+ |..+
T Consensus 120 ~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l 153 (329)
T 3ckj_A 120 GEALWRSLAASRGDIVVFVDSDLINPHPMFVPWL 153 (329)
T ss_dssp HHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHH
Confidence 122223344557799999999999 6544 4544
No 13
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=38.02 E-value=82 Score=33.63 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCCCEEEEEEeecCcchHHHHHHHHHHHHHhCC-CCcE-EEEEcCCCCHHHHHHHHHcCCEEEEEeeccCCcccccccc
Q 006648 300 GSVHREAYATILHSAHVYVCGAIAAAQSIRMSGS-TRDL-VILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYN 377 (637)
Q Consensus 300 ~~~~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns-~~dl-VILvtd~ISee~r~~Lk~~g~~V~~I~~I~~P~~~~~~~~ 377 (637)
...++...|...+.... ..+.-++.||..... ...+ +|+++++-++.+...+.+....++.| ..+...
T Consensus 63 ~~~p~vSVIIp~yN~~~--~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi---~~~~n~----- 132 (501)
T 2ffu_A 63 VDLPATSVVITFHNEAR--SALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVL---RNDRRE----- 132 (501)
T ss_dssp SSCCCEEEEEEESSCCH--HHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEE---ECSSCC-----
T ss_pred cCCCCEEEEEEeCcCcH--HHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEEE---ECCCCc-----
Confidence 34556666665554322 134456677776543 3222 55666655544433222222233222 222111
Q ss_pred chhHHHHHHcccCCCceEEEecccccccCC-chhhh
Q 006648 378 EWNYSKFRLWQLTDYDKIIFIDADLLILRN-IDFLF 412 (637)
Q Consensus 378 ~~tysKL~Iw~LtdYDRVLYLDAD~LVL~n-LDeLF 412 (637)
.....+-........|-|++||+|+++..+ |..|.
T Consensus 133 G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll 168 (501)
T 2ffu_A 133 GLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLL 168 (501)
T ss_dssp HHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHH
Confidence 112244444555678999999999998755 44443
No 14
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=37.09 E-value=78 Score=34.62 Aligned_cols=95 Identities=7% Similarity=-0.007 Sum_probs=52.5
Q ss_pred CCEEEEEEeecCcchHHHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHHcC--CEEEEEeeccCCccccccccch
Q 006648 303 HREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDL-VILVDETISAYHRSGLEAAG--WKVRTIQRIRNPKAEKDAYNEW 379 (637)
Q Consensus 303 ~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns~~dl-VILvtd~ISee~r~~Lk~~g--~~V~~I~~I~~P~~~~~~~~~~ 379 (637)
++...+...+.. .....-++.||.......++ +|+++++-+++..+.+++.. ..++.+.. +.... ..
T Consensus 93 p~vsviIp~~n~---~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~---~~~~~----g~ 162 (625)
T 2z86_A 93 DGLSIVIPTYNR---AKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQ---KDYGY----QL 162 (625)
T ss_dssp CCEEEEEEESSC---HHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEE---CCCSC----CH
T ss_pred CcEEEEEecCCc---HHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEe---CCCCc----ch
Confidence 456666555533 24455677888765432244 55566666666777777653 22332221 11100 01
Q ss_pred hHHHHHHcccCCCceEEEecccccccCC
Q 006648 380 NYSKFRLWQLTDYDKIIFIDADLLILRN 407 (637)
Q Consensus 380 tysKL~Iw~LtdYDRVLYLDAD~LVL~n 407 (637)
...+-........|-|++||+|.++..+
T Consensus 163 ~~a~N~g~~~a~g~~v~~lD~D~~~~~~ 190 (625)
T 2z86_A 163 CAVRNLGLRAAKYNYVAILDCDMAPNPL 190 (625)
T ss_dssp HHHHHHHHHHCCSSEEEEECTTEEECTT
T ss_pred hHHHHHHHHhCCcCEEEEECCCCCCCHH
Confidence 1223334445678999999999999655
No 15
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=32.66 E-value=35 Score=35.25 Aligned_cols=167 Identities=11% Similarity=0.129 Sum_probs=87.2
Q ss_pred CCCEEEEEEeecCcchH-HHHHHHHHHHHHhC-CCCc--EEEEEcCC--CCHHHHHHHHHcC-CEEEEEeeccCCccccc
Q 006648 302 VHREAYATILHSAHVYV-CGAIAAAQSIRMSG-STRD--LVILVDET--ISAYHRSGLEAAG-WKVRTIQRIRNPKAEKD 374 (637)
Q Consensus 302 ~~R~AYVTlLtsdd~YL-~gAiVL~~SLr~~n-s~~d--lVILvtd~--ISee~r~~Lk~~g-~~V~~I~~I~~P~~~~~ 374 (637)
.-+.+...+.+ ..|+ .-.--.+.|-.++- +++. ++|+.|+. ++.-. .| -+-+.|-.+.. . .
T Consensus 47 n~tIGl~vfa~--GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p~v~------l~~~r~~~V~~i~~--~--~ 114 (289)
T 1o7q_A 47 KITVGLTVFAV--GRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIE------LGPLRSFKVFKIKP--E--K 114 (289)
T ss_dssp TCCEEEEEEEC--TTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCCC------CCTTEEEEEEECCC--C--S
T ss_pred CCeEEEEEEEe--cccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCCccc------cCCCCeEEEEEecc--c--c
Confidence 34455544444 4788 77777788877762 4444 45554421 22100 11 11112222211 1 1
Q ss_pred cccchhHHHHHHcc-------cCCCceEEEecccccccCCchhhhCCCCeeee------------------------c--
Q 006648 375 AYNEWNYSKFRLWQ-------LTDYDKIIFIDADLLILRNIDFLFGMPEISAT------------------------G-- 421 (637)
Q Consensus 375 ~~~~~tysKL~Iw~-------LtdYDRVLYLDAD~LVL~nLDeLFdlp~IaAv------------------------~-- 421 (637)
.+...+..|+.++. +.+.|-+.++|+|+++.+++..=.--+.++.. +
T Consensus 115 ~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E~Lg~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp~~ 194 (289)
T 1o7q_A 115 RWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLGESVAQLQAWWYKADPNDFTYERRKESAAYIPFG 194 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGGGCSSEEEEECTTTTTSCGGGSCCCCCTTSTTCCCTT
T ss_pred CCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHHHHHHHHHccCHHHhCCCCCCCCCCCCcCceeeecCC
Confidence 12223555555542 24789999999999999987542111212211 1
Q ss_pred CCCCcccceEEEEecCH------HHHHHHHH-HHHhcCCCCCCChhHHHHhcc---cceecCCccCcccc
Q 006648 422 NNGTMFNSGVMVIEPSS------CTFQLLMD-HINEFESYNGGDQGYLNEVFT---WWHRIPKHMNFLKH 481 (637)
Q Consensus 422 D~~~yFNSGVMVInPs~------~~fe~L~e-~l~~~~sy~~~DQdiLN~vF~---~w~~LP~rYN~l~~ 481 (637)
...-|+-+|+.-=.+.. .-.+.+++ ..+.+.. ...|..-||.+|- ..+.|++.|+....
T Consensus 195 eGdfYY~Ga~fGGt~~~vl~l~~~c~~~i~~D~~n~I~A-~wHDESHLNKYf~~~KPtKvLSPEY~wd~~ 263 (289)
T 1o7q_A 195 EGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEA-QWHDESHLNKYFLLNKPTKILSPEYCWDYH 263 (289)
T ss_dssp CCSCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCGG
T ss_pred CCCEEEEceeeCCcHHHHHHHHHHHHHHHHHHHhCCeEE-EecchhhhhHHHhhcCCCEEECHHHCCCcc
Confidence 12356777776544421 11222222 2222333 4789999999975 46779999987543
No 16
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold, nucleotide-binding domain, rossmann fold; HET: NAG BMA MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP: c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Probab=21.38 E-value=2.3e+02 Score=29.97 Aligned_cols=111 Identities=16% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCCCEEEEEEeecCcchHHHHHHHHHHHHHh-CC--CCcEEEEEcCCCCHHHHHHHHHcC-CEE--EEEe--eccCCccc
Q 006648 301 SVHREAYATILHSAHVYVCGAIAAAQSIRMS-GS--TRDLVILVDETISAYHRSGLEAAG-WKV--RTIQ--RIRNPKAE 372 (637)
Q Consensus 301 ~~~R~AYVTlLtsdd~YL~gAiVL~~SLr~~-ns--~~dlVILvtd~ISee~r~~Lk~~g-~~V--~~I~--~I~~P~~~ 372 (637)
...+-|+|+++-. .=|.+++-+++||.+. |. +||.|+|.+..++++-++.++++- .++ ..|. ....|...
T Consensus 25 ~r~nAtfV~L~RN--~el~~~l~Si~~vE~rFN~~y~YpwvFlNd~pFteeFk~~~~~~~sg~v~Fg~Ip~e~W~~P~~I 102 (348)
T 1s4n_A 25 GKPKACYVTLVRN--KELKGLLSSIKYVENKINKKFPYPWVFLNDEPFTEEFKEAVTKAVSSEVKFGILPKEHWSYPEWI 102 (348)
T ss_dssp SCCCEEEEEECCG--GGHHHHHHHHHHHHHHTTTTSCCCEEEEESSCCCHHHHHHHHHHCSSCEEEEECCGGGSSCCTTS
T ss_pred CCCceEEEEEecc--HHHHHHHHHHHHHHHHhhccCCCCEEEecCCCCCHHHHHHHHHhcCcceEEEEcCHHHcCCCCCc
Confidence 4667889987653 4599999999999874 44 688999999999999888777652 222 2232 12233210
Q ss_pred -----c------c---cccc-hh---HHHH---HHc---ccCCCceEEEecccccccCCch-hhhC
Q 006648 373 -----K------D---AYNE-WN---YSKF---RLW---QLTDYDKIIFIDADLLILRNID-FLFG 413 (637)
Q Consensus 373 -----~------~---~~~~-~t---ysKL---~Iw---~LtdYDRVLYLDAD~LVL~nLD-eLFd 413 (637)
+ . .+.. .+ ..|+ +.| .|.+||-.-=++.|+-+.-||+ +.|.
T Consensus 103 d~~~a~~~~~~~~~~i~Yg~s~sYr~MCRf~SG~F~~h~~l~~YdyYWRvEPdv~~~CDi~YDpF~ 168 (348)
T 1s4n_A 103 NQTKAAEIRADAATKYIYGGSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPDIKLYCDINYDVFK 168 (348)
T ss_dssp CHHHHHHHHHHHTTTSTTTTCHHHHHHHHHHHHTGGGSGGGTTCSEEEECCTTCEECSCCCSCHHH
T ss_pred CHHHHHHHHHHHhcCCccCCCcchhhhhhhhhhhhccCcccccCceEEEeCCCceeecCCCCCccH
Confidence 0 0 0110 11 2222 223 3478999999999999999986 4554
No 17
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=20.88 E-value=2.8e+02 Score=30.11 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=51.6
Q ss_pred CCCEEEEEEeecCcchHHHHHHHHHHHHH-hCCCCcEEEEEcCCCCHHHHHHHHHc---CCEEEEEeeccCCcccccccc
Q 006648 302 VHREAYATILHSAHVYVCGAIAAAQSIRM-SGSTRDLVILVDETISAYHRSGLEAA---GWKVRTIQRIRNPKAEKDAYN 377 (637)
Q Consensus 302 ~~R~AYVTlLtsdd~YL~gAiVL~~SLr~-~ns~~dlVILvtd~ISee~r~~Lk~~---g~~V~~I~~I~~P~~~~~~~~ 377 (637)
.++.+.++..+....|+.. ++.||.. +.+++. +|+++++-++.+.+.+++. ...++.+.. +..
T Consensus 374 ~~~vsiii~~yn~~~~l~~---~l~s~~~q~~~~~e-iivvdd~S~d~t~~~~~~~~~~~~~i~~~~~---~n~------ 440 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVR---CVESALNQTITDLE-VCICDDGSTDDTLRILQEHYANHPRVRFISQ---KNK------ 440 (625)
T ss_dssp SCSEEEEEEESSCTTTHHH---HHHHHHSSSCCSEE-EEEEEESCSSSHHHHHHHHHTTCTTEEEEEE---CCC------
T ss_pred CCeEEEEEeCCCCHHHHHH---HHHHHHhCcCCCeE-EEEEECcCChhHHHHHHHHHhhCCcEEEEeC---CCC------
Confidence 4566777666655566544 4566664 334444 4446665555566666553 223333321 111
Q ss_pred chhHHHHHHcccCCCceEEEecccccccCC-chhh
Q 006648 378 EWNYSKFRLWQLTDYDKIIFIDADLLILRN-IDFL 411 (637)
Q Consensus 378 ~~tysKL~Iw~LtdYDRVLYLDAD~LVL~n-LDeL 411 (637)
.....+-...+....|-|++||+|.++..+ |..+
T Consensus 441 G~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~ 475 (625)
T 2z86_A 441 GIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELC 475 (625)
T ss_dssp CHHHHHHHHHHHCCSSEEEECCTTCEECTTHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCcccChhHHHHH
Confidence 011122233344567889999999998665 4443
Done!