Query 006649
Match_columns 637
No_of_seqs 375 out of 2278
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 12:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4753 Response regulator con 100.0 5.5E-32 1.2E-36 295.5 15.9 119 33-153 1-123 (475)
2 COG0745 OmpR Response regulato 99.8 3.2E-20 7E-25 187.9 16.2 119 34-155 1-121 (229)
3 COG4565 CitB Response regulato 99.8 7.7E-19 1.7E-23 174.5 19.3 119 34-154 1-122 (224)
4 COG2197 CitB Response regulato 99.8 5.7E-19 1.2E-23 176.4 16.6 169 34-204 1-179 (211)
5 COG4566 TtrR Response regulato 99.8 2.4E-19 5.2E-24 175.2 12.7 169 32-203 3-172 (202)
6 COG2204 AtoC Response regulato 99.8 2.7E-18 5.8E-23 188.6 16.6 119 34-154 5-124 (464)
7 PF00072 Response_reg: Respons 99.8 2.9E-17 6.4E-22 143.1 15.9 110 36-147 1-112 (112)
8 PRK10046 dpiA two-component re 99.7 5.9E-16 1.3E-20 153.9 17.6 121 31-153 2-125 (225)
9 COG0784 CheY FOG: CheY-like re 99.7 1.2E-15 2.7E-20 136.0 16.8 119 32-151 4-125 (130)
10 PRK10840 transcriptional regul 99.7 7E-16 1.5E-20 151.5 16.5 169 33-203 3-180 (216)
11 PRK11466 hybrid sensory histid 99.7 6.4E-16 1.4E-20 181.4 18.0 152 1-153 630-801 (914)
12 PRK15347 two component system 99.7 7.4E-16 1.6E-20 180.3 18.5 117 33-151 690-811 (921)
13 PRK11091 aerobic respiration c 99.7 9.3E-16 2E-20 177.7 17.6 150 1-153 473-646 (779)
14 COG3437 Response regulator con 99.7 3.7E-16 8E-21 165.3 12.9 120 32-153 13-136 (360)
15 PRK10529 DNA-binding transcrip 99.7 3.6E-15 7.8E-20 144.8 17.4 118 34-153 2-119 (225)
16 TIGR02956 TMAO_torS TMAO reduc 99.7 1.5E-15 3.3E-20 178.9 17.7 150 1-152 651-823 (968)
17 PRK10841 hybrid sensory kinase 99.6 2.9E-15 6.2E-20 178.1 19.3 120 32-153 800-920 (924)
18 PRK09483 response regulator; P 99.6 5.8E-15 1.3E-19 142.3 17.9 166 33-200 1-175 (217)
19 PRK10643 DNA-binding transcrip 99.6 9.2E-15 2E-19 140.4 18.7 118 34-153 1-119 (222)
20 PRK11173 two-component respons 99.6 6E-15 1.3E-19 145.4 17.3 118 34-153 4-121 (237)
21 PLN03029 type-a response regul 99.6 5.3E-15 1.1E-19 148.4 16.8 122 32-153 7-149 (222)
22 PRK09959 hybrid sensory histid 99.6 3.3E-15 7.2E-20 180.5 18.2 149 1-151 904-1075(1197)
23 PRK10336 DNA-binding transcrip 99.6 9.9E-15 2.1E-19 140.2 17.8 118 34-153 1-119 (219)
24 PRK10816 DNA-binding transcrip 99.6 8.3E-15 1.8E-19 142.3 17.2 118 34-153 1-119 (223)
25 COG3947 Response regulator con 99.6 7.9E-16 1.7E-20 158.9 10.4 116 34-153 1-117 (361)
26 PRK11107 hybrid sensory histid 99.6 4.5E-15 9.8E-20 173.5 17.7 118 33-152 667-787 (919)
27 PRK10766 DNA-binding transcrip 99.6 1.1E-14 2.4E-19 140.9 17.2 119 33-153 2-120 (221)
28 PRK11517 transcriptional regul 99.6 2.4E-14 5.1E-19 138.3 19.0 118 34-153 1-118 (223)
29 PRK09958 DNA-binding transcrip 99.6 1.5E-14 3.2E-19 138.1 17.4 156 34-191 1-161 (204)
30 PRK09836 DNA-binding transcrip 99.6 1.3E-14 2.8E-19 141.3 17.3 117 34-152 1-118 (227)
31 TIGR02154 PhoB phosphate regul 99.6 1.9E-14 4.1E-19 138.3 17.1 118 33-152 2-122 (226)
32 COG3706 PleD Response regulato 99.6 1.1E-14 2.3E-19 159.3 16.8 121 32-154 131-254 (435)
33 PRK10955 DNA-binding transcrip 99.6 2.2E-14 4.8E-19 139.3 16.9 117 34-153 2-118 (232)
34 CHL00148 orf27 Ycf27; Reviewed 99.6 2.7E-14 5.8E-19 139.4 17.5 120 32-153 5-124 (240)
35 PRK10161 transcriptional regul 99.6 2.6E-14 5.6E-19 139.4 17.3 118 33-152 2-122 (229)
36 PRK10360 DNA-binding transcrip 99.6 2E-14 4.4E-19 136.3 16.0 155 34-194 2-158 (196)
37 PRK10430 DNA-binding transcrip 99.6 2.4E-14 5.2E-19 143.4 17.3 120 34-153 2-124 (239)
38 PRK10701 DNA-binding transcrip 99.6 2.5E-14 5.5E-19 141.0 17.3 118 34-153 2-119 (240)
39 PRK13856 two-component respons 99.6 3.4E-14 7.4E-19 140.9 17.1 117 35-153 3-120 (241)
40 PRK11083 DNA-binding response 99.6 5.1E-14 1.1E-18 135.8 16.5 118 34-153 4-122 (228)
41 TIGR03787 marine_sort_RR prote 99.6 6.7E-14 1.5E-18 136.1 17.4 117 35-153 2-121 (227)
42 PRK09468 ompR osmolarity respo 99.6 5.5E-14 1.2E-18 138.3 16.7 119 33-153 5-124 (239)
43 PRK11697 putative two-componen 99.6 5.3E-14 1.1E-18 139.1 16.3 116 33-152 1-118 (238)
44 PRK09581 pleD response regulat 99.6 1.5E-14 3.3E-19 154.3 13.0 119 31-152 153-274 (457)
45 TIGR01387 cztR_silR_copR heavy 99.6 2E-13 4.3E-18 130.8 18.2 116 36-153 1-117 (218)
46 PRK09935 transcriptional regul 99.6 2.2E-13 4.7E-18 129.8 18.2 161 33-195 3-171 (210)
47 PRK14084 two-component respons 99.6 1E-13 2.2E-18 138.2 16.5 116 34-153 1-119 (246)
48 PRK11475 DNA-binding transcrip 99.5 6.1E-14 1.3E-18 140.1 14.1 154 46-203 3-164 (207)
49 PRK15411 rcsA colanic acid cap 99.5 1.6E-13 3.4E-18 136.7 16.1 161 34-204 1-168 (207)
50 KOG0519 Sensory transduction h 99.5 4.8E-14 1E-18 165.1 14.0 120 30-150 663-784 (786)
51 PRK15479 transcriptional regul 99.5 7.4E-13 1.6E-17 127.1 19.3 118 34-153 1-119 (221)
52 TIGR02875 spore_0_A sporulatio 99.5 2.4E-13 5.2E-18 137.4 16.5 118 33-152 2-124 (262)
53 COG4567 Response regulator con 99.5 1E-13 2.2E-18 131.7 12.7 112 35-148 11-123 (182)
54 PRK10100 DNA-binding transcrip 99.5 9.5E-14 2.1E-18 139.5 13.2 166 32-203 9-185 (216)
55 PRK10365 transcriptional regul 99.5 2E-13 4.4E-18 148.0 15.7 119 32-152 4-123 (441)
56 PRK09390 fixJ response regulat 99.5 3.9E-13 8.5E-18 125.8 13.9 120 32-153 2-122 (202)
57 PRK10710 DNA-binding transcrip 99.5 1.1E-12 2.3E-17 128.2 17.5 117 34-152 11-127 (240)
58 PRK15369 two component system 99.5 1.7E-12 3.6E-17 122.0 18.1 161 33-195 3-171 (211)
59 PRK11361 acetoacetate metaboli 99.5 6.5E-13 1.4E-17 144.9 16.5 118 32-151 3-121 (457)
60 PRK10923 glnG nitrogen regulat 99.5 8.1E-13 1.8E-17 145.2 17.2 117 34-152 4-121 (469)
61 PRK15115 response regulator Gl 99.5 5.6E-13 1.2E-17 145.3 15.9 118 33-152 5-123 (444)
62 PRK13837 two-component VirA-li 99.5 9.3E-13 2E-17 154.8 18.6 150 1-153 643-815 (828)
63 PRK10403 transcriptional regul 99.5 1.4E-12 3.1E-17 123.8 16.3 159 33-193 6-173 (215)
64 PRK10651 transcriptional regul 99.5 2.6E-12 5.7E-17 122.3 18.0 163 33-197 6-179 (216)
65 PRK12555 chemotaxis-specific m 99.5 9.6E-13 2.1E-17 139.3 15.8 102 34-137 1-106 (337)
66 TIGR02915 PEP_resp_reg putativ 99.5 9.1E-13 2E-17 143.7 15.9 113 36-152 1-119 (445)
67 TIGR01818 ntrC nitrogen regula 99.4 2.2E-12 4.8E-17 141.2 15.9 115 36-152 1-116 (463)
68 PRK10610 chemotaxis regulatory 99.4 1.2E-11 2.6E-16 105.4 17.0 118 33-152 5-126 (129)
69 PRK13435 response regulator; P 99.4 5E-12 1.1E-16 116.0 15.4 118 32-154 4-123 (145)
70 PRK09581 pleD response regulat 99.4 6.3E-12 1.4E-16 134.2 17.9 118 34-153 3-123 (457)
71 PRK13557 histidine kinase; Pro 99.4 5.9E-12 1.3E-16 137.4 16.9 151 1-152 362-535 (540)
72 PRK00742 chemotaxis-specific m 99.4 8.3E-12 1.8E-16 132.9 16.3 104 33-138 3-110 (354)
73 PRK13558 bacterio-opsin activa 99.4 5.4E-12 1.2E-16 144.0 14.7 118 33-152 7-127 (665)
74 COG2201 CheB Chemotaxis respon 99.4 4.6E-12 9.9E-17 135.3 13.2 104 33-138 1-108 (350)
75 PLN03162 golden-2 like transcr 99.3 3.1E-12 6.7E-17 134.6 8.8 64 217-285 232-295 (526)
76 PRK09191 two-component respons 99.3 7.4E-11 1.6E-15 118.3 15.6 116 33-152 137-254 (261)
77 COG3707 AmiR Response regulato 99.2 8.9E-11 1.9E-15 115.8 12.3 119 32-152 4-123 (194)
78 cd00156 REC Signal receiver do 99.2 3.5E-10 7.6E-15 91.5 13.0 111 37-149 1-112 (113)
79 PRK10693 response regulator of 99.1 4.4E-10 9.5E-15 118.0 12.4 89 62-152 2-92 (303)
80 COG3279 LytT Response regulato 99.1 3.7E-10 8E-15 115.7 11.0 116 33-152 1-119 (244)
81 PRK13503 transcriptional activ 98.9 5.1E-10 1.1E-14 114.2 3.9 61 224-289 207-267 (278)
82 PRK13501 transcriptional activ 98.9 5.6E-10 1.2E-14 115.5 3.9 61 224-289 212-272 (290)
83 PRK13502 transcriptional activ 98.9 6.9E-10 1.5E-14 114.0 3.9 61 224-289 212-272 (282)
84 PRK15029 arginine decarboxylas 98.9 1.3E-08 2.8E-13 118.9 14.0 114 34-149 1-130 (755)
85 PRK10219 DNA-binding transcrip 98.9 1.2E-09 2.5E-14 97.6 4.0 61 224-289 41-101 (107)
86 TIGR01557 myb_SHAQKYF myb-like 98.9 3.1E-09 6.7E-14 86.3 5.8 54 220-278 1-55 (57)
87 PRK13500 transcriptional activ 98.9 1.4E-09 3.1E-14 114.4 3.9 61 224-289 242-302 (312)
88 PRK10572 DNA-binding transcrip 98.9 1.5E-09 3.3E-14 112.0 4.0 61 224-289 219-279 (290)
89 TIGR02297 HpaA 4-hydroxyphenyl 98.8 1.6E-09 3.5E-14 111.2 3.8 61 224-289 222-282 (287)
90 PRK10296 DNA-binding transcrip 98.8 4.3E-09 9.3E-14 108.0 3.9 61 224-289 208-268 (278)
91 PF12833 HTH_18: Helix-turn-he 98.8 4E-09 8.7E-14 89.2 2.7 61 224-289 15-76 (81)
92 PRK11511 DNA-binding transcrip 98.8 6.4E-09 1.4E-13 96.4 4.2 61 224-289 45-105 (127)
93 COG2207 AraC AraC-type DNA-bin 98.6 2.7E-08 5.9E-13 88.5 4.0 61 224-289 56-116 (127)
94 PRK10371 DNA-binding transcrip 98.6 3.3E-08 7.1E-13 104.0 3.7 61 224-289 227-287 (302)
95 PRK09393 ftrA transcriptional 98.6 3.6E-08 7.8E-13 104.0 3.7 62 223-289 253-314 (322)
96 PRK09978 DNA-binding transcrip 98.5 3.7E-08 8E-13 103.0 2.9 60 224-289 178-237 (274)
97 PRK15121 right oriC-binding tr 98.5 8.6E-08 1.9E-12 99.8 4.0 61 224-289 41-101 (289)
98 PRK09685 DNA-binding transcrip 98.5 6.9E-08 1.5E-12 100.1 3.2 60 224-289 234-295 (302)
99 PRK09940 transcriptional regul 98.5 8.2E-08 1.8E-12 99.4 3.3 59 224-289 170-228 (253)
100 PRK15044 transcriptional regul 98.4 7.7E-08 1.7E-12 101.2 2.6 61 223-289 227-287 (295)
101 PRK15185 transcriptional regul 98.4 1.5E-07 3.2E-12 99.8 3.1 60 224-289 242-301 (309)
102 smart00342 HTH_ARAC helix_turn 98.4 3.7E-07 8.1E-12 75.5 3.9 61 224-289 21-81 (84)
103 PRK15340 transcriptional regul 98.3 3.2E-07 7E-12 92.9 3.8 62 223-289 144-205 (216)
104 PRK15186 AraC family transcrip 98.3 2.7E-07 5.8E-12 97.3 3.0 60 224-289 217-276 (291)
105 COG4977 Transcriptional regula 98.3 4.8E-07 1E-11 96.7 3.4 62 223-289 255-316 (328)
106 PRK10130 transcriptional regul 98.2 1.1E-06 2.5E-11 94.7 4.5 63 223-290 275-340 (350)
107 PRK11107 hybrid sensory histid 98.1 2.1E-05 4.6E-10 92.8 14.0 144 1-150 486-650 (919)
108 PRK15435 bifunctional DNA-bind 98.1 1.7E-06 3.6E-11 93.6 4.1 60 224-289 119-178 (353)
109 COG3706 PleD Response regulato 98.0 6.3E-06 1.4E-10 91.2 5.3 94 57-153 12-105 (435)
110 PRK10618 phosphotransfer inter 97.8 2.4E-05 5.2E-10 93.9 6.4 81 1-89 640-737 (894)
111 PF00165 HTH_AraC: Bacterial r 97.6 5.7E-05 1.2E-09 57.0 2.9 32 257-289 7-38 (42)
112 COG2169 Ada Adenosine deaminas 97.6 4.9E-05 1.1E-09 75.4 3.1 62 222-289 115-176 (187)
113 smart00448 REC cheY-homologous 97.4 0.0012 2.6E-08 46.2 8.2 55 34-90 1-55 (55)
114 PF06490 FleQ: Flagellar regul 97.3 0.0017 3.7E-08 59.1 9.9 105 35-149 1-107 (109)
115 cd02071 MM_CoA_mut_B12_BD meth 95.3 0.49 1.1E-05 43.6 13.5 105 40-146 10-120 (122)
116 PRK02261 methylaspartate mutas 95.2 0.61 1.3E-05 44.3 14.1 115 33-150 3-134 (137)
117 cd02067 B12-binding B12 bindin 94.6 0.39 8.5E-06 43.5 10.6 93 40-134 10-108 (119)
118 PF03709 OKR_DC_1_N: Orn/Lys/A 94.4 0.38 8.2E-06 44.1 9.9 104 46-151 6-113 (115)
119 TIGR00640 acid_CoA_mut_C methy 94.0 2.3 4.9E-05 40.2 14.5 116 34-151 3-128 (132)
120 cd04728 ThiG Thiazole synthase 90.5 2.9 6.2E-05 43.8 11.3 113 32-152 92-226 (248)
121 PF02310 B12-binding: B12 bind 90.4 5.5 0.00012 35.6 11.9 91 41-134 12-110 (121)
122 PRK15399 lysine decarboxylase 90.2 2.9 6.2E-05 49.9 12.5 113 34-150 1-121 (713)
123 TIGR03815 CpaE_hom_Actino heli 89.7 1.2 2.7E-05 47.3 8.2 83 58-149 2-85 (322)
124 PRK00208 thiG thiazole synthas 89.6 3.3 7E-05 43.5 10.9 113 32-152 92-226 (250)
125 PRK15400 lysine decarboxylase 89.2 3.1 6.7E-05 49.7 11.7 113 34-150 1-121 (714)
126 COG4753 Response regulator con 88.7 0.19 4.1E-06 56.8 1.3 54 231-289 208-269 (475)
127 PRK15435 bifunctional DNA-bind 88.6 0.38 8.3E-06 52.5 3.6 34 256-290 97-130 (353)
128 TIGR01501 MthylAspMutase methy 87.8 12 0.00027 35.6 12.7 108 41-150 13-132 (134)
129 PRK15320 transcriptional activ 85.6 2.7 5.9E-05 43.0 7.2 165 35-203 3-194 (251)
130 PF01408 GFO_IDH_MocA: Oxidore 83.6 30 0.00066 30.6 12.6 106 34-152 1-112 (120)
131 PRK01130 N-acetylmannosamine-6 82.6 22 0.00047 35.8 12.5 83 50-135 111-202 (221)
132 cd02070 corrinoid_protein_B12- 81.9 18 0.00039 36.2 11.5 98 33-135 82-191 (201)
133 PF10087 DUF2325: Uncharacteri 81.8 10 0.00023 33.4 8.7 80 35-114 1-83 (97)
134 PRK00043 thiE thiamine-phospha 81.6 20 0.00044 35.2 11.7 69 62-134 110-187 (212)
135 cd02069 methionine_synthase_B1 81.5 15 0.00033 37.4 10.9 103 32-136 87-202 (213)
136 cd04729 NanE N-acetylmannosami 80.6 20 0.00044 36.0 11.4 72 61-135 128-206 (219)
137 PRK10219 DNA-binding transcrip 80.2 2 4.4E-05 38.2 3.7 33 257-290 20-52 (107)
138 PRK11511 DNA-binding transcrip 79.7 1.7 3.7E-05 40.3 3.2 33 257-290 24-56 (127)
139 COG4999 Uncharacterized domain 77.0 12 0.00026 35.5 7.7 108 31-146 9-121 (140)
140 cd02072 Glm_B12_BD B12 binding 76.6 52 0.0011 31.3 12.1 103 42-147 12-127 (128)
141 COG2169 Ada Adenosine deaminas 76.5 2.6 5.6E-05 42.4 3.5 34 256-290 95-128 (187)
142 PRK03958 tRNA 2'-O-methylase; 76.4 26 0.00057 35.1 10.4 94 35-136 33-129 (176)
143 PRK10572 DNA-binding transcrip 76.4 2.3 4.9E-05 44.2 3.2 33 257-290 198-230 (290)
144 PRK12724 flagellar biosynthesi 76.1 13 0.00028 42.1 9.1 120 12-133 230-365 (432)
145 PRK13503 transcriptional activ 74.8 3.5 7.6E-05 42.2 4.1 32 257-289 186-217 (278)
146 COG2185 Sbm Methylmalonyl-CoA 74.0 81 0.0017 30.7 12.7 115 32-150 11-137 (143)
147 PRK10558 alpha-dehydro-beta-de 74.0 30 0.00065 36.3 10.8 100 48-149 9-113 (256)
148 PRK10128 2-keto-3-deoxy-L-rham 73.3 36 0.00077 36.1 11.2 100 48-149 8-112 (267)
149 cd02068 radical_SAM_B12_BD B12 72.8 33 0.00073 31.3 9.7 104 44-149 3-110 (127)
150 TIGR03239 GarL 2-dehydro-3-deo 72.8 39 0.00084 35.3 11.2 99 49-149 3-106 (249)
151 PRK09685 DNA-binding transcrip 71.8 4 8.6E-05 42.4 3.7 38 250-289 206-243 (302)
152 TIGR00007 phosphoribosylformim 70.3 50 0.0011 33.2 11.2 67 66-134 147-217 (230)
153 PRK09393 ftrA transcriptional 69.7 3.4 7.3E-05 43.8 2.7 32 257-289 233-264 (322)
154 cd04724 Tryptophan_synthase_al 69.5 19 0.00042 37.1 8.1 56 94-149 64-125 (242)
155 cd04730 NPD_like 2-Nitropropan 69.2 65 0.0014 32.3 11.7 71 62-135 108-185 (236)
156 PF09936 Methyltrn_RNA_4: SAM- 69.0 46 0.00099 33.7 10.1 100 35-139 44-162 (185)
157 TIGR02297 HpaA 4-hydroxyphenyl 68.2 6 0.00013 40.8 4.1 33 257-290 201-233 (287)
158 TIGR02370 pyl_corrinoid methyl 68.2 41 0.00088 33.7 9.9 96 34-134 85-192 (197)
159 TIGR01334 modD putative molybd 67.4 42 0.00091 35.8 10.2 92 36-131 159-259 (277)
160 PRK09426 methylmalonyl-CoA mut 67.3 65 0.0014 38.8 12.8 117 33-151 582-708 (714)
161 PRK07896 nicotinate-nucleotide 67.1 53 0.0012 35.3 11.0 93 36-132 173-271 (289)
162 smart00342 HTH_ARAC helix_turn 67.0 5.1 0.00011 32.6 2.7 31 258-289 1-31 (84)
163 COG0512 PabA Anthranilate/para 65.9 9.3 0.0002 38.7 4.7 76 33-112 1-80 (191)
164 CHL00162 thiG thiamin biosynth 65.6 1.1E+02 0.0023 32.7 12.5 116 32-152 106-240 (267)
165 PRK12704 phosphodiesterase; Pr 64.9 7.8 0.00017 44.7 4.5 47 106-152 248-297 (520)
166 PRK10371 DNA-binding transcrip 64.5 7.1 0.00015 41.4 3.8 32 257-289 206-237 (302)
167 PRK15340 transcriptional regul 64.3 5.5 0.00012 41.0 2.9 53 231-289 103-155 (216)
168 PRK00278 trpC indole-3-glycero 63.9 1.3E+02 0.0029 31.5 13.0 94 37-134 139-239 (260)
169 TIGR00262 trpA tryptophan synt 63.8 25 0.00055 36.8 7.7 57 93-149 73-136 (256)
170 PLN02591 tryptophan synthase 63.3 25 0.00053 36.9 7.5 57 93-149 65-127 (250)
171 TIGR03151 enACPred_II putative 63.2 62 0.0013 34.8 10.7 80 52-134 104-189 (307)
172 PRK13111 trpA tryptophan synth 63.1 25 0.00053 37.0 7.5 57 93-149 75-138 (258)
173 COG2207 AraC AraC-type DNA-bin 62.8 11 0.00023 33.2 4.1 33 256-289 34-66 (127)
174 cd04727 pdxS PdxS is a subunit 62.8 47 0.001 35.7 9.4 89 61-152 117-247 (283)
175 PRK01911 ppnK inorganic polyph 61.5 38 0.00083 36.3 8.7 102 34-154 1-122 (292)
176 cd00564 TMP_TenI Thiamine mono 61.5 57 0.0012 31.1 9.2 69 62-134 101-177 (196)
177 PF07688 KaiA: KaiA domain; I 61.5 30 0.00064 36.8 7.5 112 35-152 2-119 (283)
178 cd03114 ArgK-like The function 61.4 7.1 0.00015 37.2 2.9 43 67-115 81-123 (148)
179 cd00331 IGPS Indole-3-glycerol 61.0 1.7E+02 0.0037 29.2 12.8 76 55-134 119-200 (217)
180 PRK00748 1-(5-phosphoribosyl)- 60.8 40 0.00087 33.9 8.3 66 67-134 149-219 (233)
181 PF02254 TrkA_N: TrkA-N domain 60.3 79 0.0017 27.9 9.3 90 34-133 22-114 (116)
182 PRK11889 flhF flagellar biosyn 59.8 36 0.00079 38.5 8.3 57 31-87 267-328 (436)
183 TIGR01037 pyrD_sub1_fam dihydr 59.0 1.2E+02 0.0027 31.9 11.9 59 95-153 223-287 (300)
184 TIGR02311 HpaI 2,4-dihydroxyhe 58.9 1.1E+02 0.0023 32.0 11.2 99 49-149 3-106 (249)
185 PF03602 Cons_hypoth95: Conser 58.7 39 0.00085 33.6 7.7 67 34-102 66-138 (183)
186 PRK13502 transcriptional activ 57.9 9.3 0.0002 39.4 3.3 32 258-290 192-223 (282)
187 PRK15121 right oriC-binding tr 57.8 8.7 0.00019 40.2 3.1 32 257-289 20-51 (289)
188 TIGR00343 pyridoxal 5'-phospha 57.4 64 0.0014 34.8 9.3 60 93-152 184-250 (287)
189 CHL00200 trpA tryptophan synth 57.2 35 0.00075 36.0 7.4 57 93-149 78-140 (263)
190 PTZ00314 inosine-5'-monophosph 56.7 87 0.0019 36.1 11.0 101 32-135 252-373 (495)
191 cd03823 GT1_ExpE7_like This fa 56.6 1.9E+02 0.0041 29.1 12.5 66 80-151 263-328 (359)
192 PRK07259 dihydroorotate dehydr 56.5 1.2E+02 0.0025 32.1 11.3 58 95-152 223-286 (301)
193 PF01596 Methyltransf_3: O-met 56.3 58 0.0013 33.1 8.6 61 28-88 65-130 (205)
194 PRK08385 nicotinate-nucleotide 56.2 2.1E+02 0.0045 30.7 13.0 92 36-132 157-256 (278)
195 PRK10296 DNA-binding transcrip 56.0 9.1 0.0002 39.4 2.8 31 259-290 189-219 (278)
196 PRK12726 flagellar biosynthesi 55.9 52 0.0011 37.0 8.7 56 32-87 233-293 (407)
197 PRK11840 bifunctional sulfur c 55.3 98 0.0021 34.0 10.5 117 32-152 166-300 (326)
198 PRK10130 transcriptional regul 55.1 11 0.00024 41.2 3.4 36 252-289 251-286 (350)
199 PRK05749 3-deoxy-D-manno-octul 55.1 1.2E+02 0.0026 33.2 11.4 54 94-151 334-387 (425)
200 PRK13587 1-(5-phosphoribosyl)- 55.0 66 0.0014 33.2 8.9 67 67-134 151-220 (234)
201 PRK05458 guanosine 5'-monophos 54.9 1.8E+02 0.0038 32.0 12.4 98 35-135 113-230 (326)
202 cd02065 B12-binding_like B12 b 54.9 75 0.0016 28.3 8.3 70 40-111 10-85 (125)
203 cd04723 HisA_HisF Phosphoribos 54.6 63 0.0014 33.1 8.7 67 66-134 148-217 (233)
204 cd04726 KGPDC_HPS 3-Keto-L-gul 54.0 2.1E+02 0.0045 27.9 11.9 99 32-134 76-185 (202)
205 PRK14956 DNA polymerase III su 53.8 2.1E+02 0.0046 33.1 13.3 74 79-152 121-195 (484)
206 TIGR01761 thiaz-red thiazoliny 53.6 1.4E+02 0.0031 32.7 11.6 105 32-151 2-113 (343)
207 TIGR03088 stp2 sugar transfera 53.3 1.1E+02 0.0024 32.3 10.5 107 33-151 229-337 (374)
208 PRK13500 transcriptional activ 53.3 12 0.00027 39.6 3.3 32 258-290 222-253 (312)
209 PRK05703 flhF flagellar biosyn 53.0 1.2E+02 0.0025 34.3 11.1 91 32-123 250-349 (424)
210 PRK06096 molybdenum transport 52.1 91 0.002 33.5 9.5 70 59-132 192-261 (284)
211 PRK05567 inosine 5'-monophosph 51.9 1.2E+02 0.0025 34.8 11.0 99 32-134 239-359 (486)
212 PLN02871 UDP-sulfoquinovose:DA 51.6 1.7E+02 0.0037 32.6 12.1 107 33-151 290-399 (465)
213 PLN02274 inosine-5'-monophosph 51.5 98 0.0021 35.8 10.4 100 32-134 259-379 (505)
214 PRK05718 keto-hydroxyglutarate 51.3 1.8E+02 0.0038 29.8 11.2 90 51-143 10-101 (212)
215 cd04722 TIM_phosphate_binding 51.1 1E+02 0.0022 28.8 8.9 55 80-134 137-198 (200)
216 PRK06731 flhF flagellar biosyn 51.0 54 0.0012 34.7 7.6 55 32-87 102-162 (270)
217 PRK14974 cell division protein 50.9 74 0.0016 34.8 8.9 55 32-88 167-231 (336)
218 TIGR00735 hisF imidazoleglycer 50.8 1.5E+02 0.0033 30.6 10.9 79 67-147 158-247 (254)
219 PF00534 Glycos_transf_1: Glyc 50.8 1.7E+02 0.0036 27.2 10.2 110 32-153 46-159 (172)
220 cd04732 HisA HisA. Phosphorib 50.4 1.8E+02 0.0038 29.2 11.0 68 65-134 147-218 (234)
221 PRK15484 lipopolysaccharide 1, 49.8 2.4E+02 0.0051 30.6 12.6 109 33-151 224-343 (380)
222 cd01424 MGS_CPS_II Methylglyox 49.7 1.3E+02 0.0028 26.9 8.9 24 39-62 8-31 (110)
223 cd03813 GT1_like_3 This family 49.2 1.5E+02 0.0033 33.2 11.3 65 80-151 371-441 (475)
224 PRK13501 transcriptional activ 48.6 16 0.00034 38.0 3.2 32 257-289 191-222 (290)
225 cd00381 IMPDH IMPDH: The catal 47.9 1.9E+02 0.0041 31.3 11.4 99 32-134 105-225 (325)
226 PRK02083 imidazole glycerol ph 47.6 1.8E+02 0.004 29.9 10.8 78 67-147 156-245 (253)
227 PRK06843 inosine 5-monophospha 47.5 1.8E+02 0.0038 32.9 11.3 100 32-134 164-284 (404)
228 TIGR00064 ftsY signal recognit 47.3 77 0.0017 33.4 8.1 55 31-87 98-162 (272)
229 PF04131 NanE: Putative N-acet 46.9 1.7E+02 0.0038 29.8 10.0 100 32-135 63-173 (192)
230 TIGR02026 BchE magnesium-proto 46.9 1.6E+02 0.0034 33.8 11.0 107 42-151 21-137 (497)
231 PRK07649 para-aminobenzoate/an 46.1 23 0.00051 35.4 3.9 48 36-85 2-49 (195)
232 TIGR00734 hisAF_rel hisA/hisF 46.0 1.1E+02 0.0024 31.3 8.8 68 65-134 142-212 (221)
233 TIGR01163 rpe ribulose-phospha 45.4 1.9E+02 0.0041 28.3 10.1 55 93-147 43-98 (210)
234 PRK07428 nicotinate-nucleotide 45.3 1.7E+02 0.0037 31.4 10.4 92 36-132 169-268 (288)
235 cd03819 GT1_WavL_like This fam 45.2 3.1E+02 0.0067 28.1 12.1 109 33-151 216-329 (355)
236 PF01729 QRPTase_C: Quinolinat 44.3 70 0.0015 31.6 6.8 93 36-132 53-152 (169)
237 PF13384 HTH_23: Homeodomain-l 43.7 18 0.00038 27.7 2.0 32 250-283 10-41 (50)
238 TIGR00693 thiE thiamine-phosph 43.6 1.6E+02 0.0034 28.8 9.2 70 61-134 101-179 (196)
239 cd06533 Glyco_transf_WecG_TagA 43.6 1.4E+02 0.003 29.2 8.7 77 32-112 45-130 (171)
240 cd04962 GT1_like_5 This family 43.4 2.1E+02 0.0044 29.8 10.6 65 80-151 271-335 (371)
241 cd04731 HisF The cyclase subun 42.8 1.2E+02 0.0027 30.8 8.6 70 63-134 26-99 (243)
242 PRK05848 nicotinate-nucleotide 42.5 1.8E+02 0.0038 31.1 9.9 90 36-133 155-255 (273)
243 KOG1601 GATA-4/5/6 transcripti 42.4 3 6.6E-05 41.5 -3.1 112 37-150 19-137 (340)
244 PRK00994 F420-dependent methyl 42.3 1.5E+02 0.0032 31.5 8.8 81 55-138 29-118 (277)
245 TIGR00262 trpA tryptophan synt 42.1 3.5E+02 0.0076 28.3 12.0 102 32-136 114-228 (256)
246 PRK06774 para-aminobenzoate sy 42.0 32 0.00069 33.9 4.1 73 36-112 2-78 (191)
247 PF04321 RmlD_sub_bind: RmlD s 42.0 83 0.0018 33.0 7.4 80 34-115 1-102 (286)
248 TIGR03499 FlhF flagellar biosy 41.8 26 0.00055 37.0 3.5 54 33-87 224-280 (282)
249 PF14097 SpoVAE: Stage V sporu 41.4 3.2E+02 0.0069 27.6 10.6 75 36-110 3-86 (180)
250 PRK10669 putative cation:proto 41.3 2.2E+02 0.0047 33.0 11.2 93 32-133 439-533 (558)
251 PRK07695 transcriptional regul 41.2 2.4E+02 0.0052 27.9 10.2 67 62-132 101-174 (201)
252 cd00331 IGPS Indole-3-glycerol 41.0 1.2E+02 0.0027 30.2 8.2 67 83-149 49-117 (217)
253 PF03060 NMO: Nitronate monoox 40.9 2E+02 0.0043 31.1 10.2 80 52-134 131-218 (330)
254 PRK09922 UDP-D-galactose:(gluc 40.9 1.8E+02 0.004 30.8 9.9 68 80-153 258-325 (359)
255 KOG4216 Steroid hormone nuclea 40.6 53 0.0011 36.8 5.7 36 408-443 112-147 (479)
256 PLN02591 tryptophan synthase 40.5 3.3E+02 0.0072 28.6 11.4 98 36-136 110-219 (250)
257 cd04740 DHOD_1B_like Dihydroor 40.3 3.9E+02 0.0084 28.0 12.1 57 95-151 220-282 (296)
258 PRK13125 trpA tryptophan synth 40.2 1.1E+02 0.0023 31.7 7.7 54 96-149 64-125 (244)
259 KOG4175 Tryptophan synthase al 40.2 83 0.0018 32.6 6.6 44 105-148 94-143 (268)
260 cd03313 enolase Enolase: Enola 39.9 2.1E+02 0.0046 32.0 10.5 105 40-147 210-347 (408)
261 PF01081 Aldolase: KDPG and KH 39.8 80 0.0017 32.1 6.5 80 60-143 13-94 (196)
262 KOG1562 Spermidine synthase [A 39.6 86 0.0019 34.3 6.9 64 35-100 147-216 (337)
263 COG4977 Transcriptional regula 39.4 34 0.00073 37.5 4.0 40 249-289 224-266 (328)
264 PRK10416 signal recognition pa 38.7 1.1E+02 0.0025 33.0 7.9 55 31-87 140-204 (318)
265 PRK14959 DNA polymerase III su 38.7 2.9E+02 0.0063 33.0 11.7 72 79-152 119-193 (624)
266 PRK14098 glycogen synthase; Pr 38.5 2.5E+02 0.0053 32.1 10.9 112 33-151 336-450 (489)
267 PLN02935 Bifunctional NADH kin 37.8 2.2E+02 0.0047 33.2 10.2 102 34-154 195-320 (508)
268 PRK14722 flhF flagellar biosyn 37.7 2.5E+02 0.0054 31.4 10.5 87 34-121 168-262 (374)
269 PRK13125 trpA tryptophan synth 37.7 3.5E+02 0.0077 27.8 11.1 89 45-136 117-215 (244)
270 PRK04885 ppnK inorganic polyph 37.5 91 0.002 33.0 6.8 56 80-154 36-95 (265)
271 PRK09016 quinolinate phosphori 37.4 2.6E+02 0.0055 30.4 10.2 89 36-131 182-276 (296)
272 TIGR01163 rpe ribulose-phospha 37.1 1E+02 0.0022 30.2 6.8 67 65-135 115-193 (210)
273 PRK07028 bifunctional hexulose 37.0 5.1E+02 0.011 29.0 13.0 72 80-152 132-212 (430)
274 cd08179 NADPH_BDH NADPH-depend 36.8 2.6E+02 0.0056 30.6 10.5 63 34-101 24-100 (375)
275 cd04731 HisF The cyclase subun 36.6 1.8E+02 0.004 29.5 8.7 64 68-134 153-222 (243)
276 cd05844 GT1_like_7 Glycosyltra 36.5 4.2E+02 0.0091 27.4 11.6 108 33-151 219-335 (367)
277 TIGR00736 nifR3_rel_arch TIM-b 36.5 4.5E+02 0.0097 27.4 11.5 95 37-134 115-219 (231)
278 cd00429 RPE Ribulose-5-phospha 36.5 1.2E+02 0.0026 29.6 7.1 54 80-134 128-193 (211)
279 PRK14949 DNA polymerase III su 36.4 90 0.002 38.8 7.3 72 79-152 119-193 (944)
280 PRK04128 1-(5-phosphoribosyl)- 36.1 3.5E+02 0.0075 27.8 10.6 69 64-134 30-101 (228)
281 PRK13566 anthranilate synthase 36.1 83 0.0018 38.0 6.9 79 30-112 523-604 (720)
282 TIGR01305 GMP_reduct_1 guanosi 36.0 1.6E+02 0.0034 32.7 8.4 57 79-135 121-178 (343)
283 PRK06015 keto-hydroxyglutarate 35.8 2.4E+02 0.0052 28.8 9.3 80 62-144 11-91 (201)
284 PRK09140 2-dehydro-3-deoxy-6-p 35.3 2.8E+02 0.006 28.1 9.7 92 52-145 6-99 (206)
285 PRK14075 pnk inorganic polypho 35.2 2.9E+02 0.0064 28.9 10.1 94 34-154 1-96 (256)
286 PRK02155 ppnK NAD(+)/NADH kina 35.1 3E+02 0.0064 29.5 10.3 101 35-154 7-121 (291)
287 PRK04180 pyridoxal biosynthesi 35.0 1E+02 0.0022 33.4 6.6 60 93-152 190-256 (293)
288 PRK05458 guanosine 5'-monophos 34.9 1.3E+02 0.0028 33.0 7.5 65 67-133 100-166 (326)
289 PF03808 Glyco_tran_WecB: Glyc 34.5 2.5E+02 0.0053 27.4 8.9 76 32-111 47-131 (172)
290 PRK01033 imidazole glycerol ph 34.5 1.9E+02 0.0041 30.1 8.6 68 66-134 154-225 (258)
291 PRK06978 nicotinate-nucleotide 34.4 3.9E+02 0.0084 29.0 11.0 90 35-131 178-273 (294)
292 TIGR03572 WbuZ glycosyl amidat 34.3 2.2E+02 0.0048 28.7 8.9 71 63-135 29-103 (232)
293 cd03820 GT1_amsD_like This fam 34.1 4.7E+02 0.01 25.8 12.2 108 33-151 209-318 (348)
294 PLN02781 Probable caffeoyl-CoA 34.1 1.8E+02 0.0038 29.9 8.1 58 31-88 91-153 (234)
295 PRK15427 colanic acid biosynth 34.0 5.7E+02 0.012 28.1 12.6 107 34-151 254-369 (406)
296 PRK03708 ppnK inorganic polyph 34.0 2.4E+02 0.0052 30.0 9.3 102 34-154 1-114 (277)
297 PRK07764 DNA polymerase III su 33.7 1.2E+02 0.0027 37.1 7.9 72 79-152 120-194 (824)
298 PRK05581 ribulose-phosphate 3- 33.6 2.2E+02 0.0047 28.2 8.5 55 80-134 132-197 (220)
299 COG0673 MviM Predicted dehydro 33.6 5.8E+02 0.013 26.7 12.9 104 33-149 3-114 (342)
300 PF05690 ThiG: Thiazole biosyn 33.4 3.2E+02 0.007 29.0 9.7 116 32-151 92-225 (247)
301 TIGR01182 eda Entner-Doudoroff 33.3 3.4E+02 0.0074 27.7 9.9 82 59-143 12-94 (204)
302 TIGR00566 trpG_papA glutamine 33.3 58 0.0012 32.2 4.3 48 36-85 2-49 (188)
303 TIGR00735 hisF imidazoleglycer 33.3 2.4E+02 0.0052 29.1 9.1 71 64-135 30-103 (254)
304 PF12840 HTH_20: Helix-turn-he 33.1 51 0.0011 26.5 3.2 34 249-283 14-48 (61)
305 PF01959 DHQS: 3-dehydroquinat 33.1 3.6E+02 0.0078 30.1 10.5 71 80-151 97-169 (354)
306 PRK01231 ppnK inorganic polyph 33.1 3.7E+02 0.008 28.9 10.6 102 34-154 5-120 (295)
307 PF01381 HTH_3: Helix-turn-hel 33.0 35 0.00077 26.3 2.2 30 252-282 3-32 (55)
308 PRK00748 1-(5-phosphoribosyl)- 33.0 2.4E+02 0.0051 28.3 8.8 71 64-135 30-103 (233)
309 PF00249 Myb_DNA-binding: Myb- 32.9 1.2E+02 0.0025 23.3 5.1 42 224-268 3-44 (48)
310 cd08187 BDH Butanol dehydrogen 32.9 2.8E+02 0.0061 30.4 10.0 64 33-101 28-105 (382)
311 TIGR00959 ffh signal recogniti 32.8 3.8E+02 0.0082 30.5 11.1 83 32-116 127-224 (428)
312 COG0157 NadC Nicotinate-nucleo 32.7 4.2E+02 0.009 28.7 10.7 89 36-131 161-258 (280)
313 PRK08007 para-aminobenzoate sy 32.5 52 0.0011 32.6 3.8 48 36-85 2-49 (187)
314 PF04309 G3P_antiterm: Glycero 32.1 51 0.0011 33.0 3.7 60 67-132 107-166 (175)
315 PRK14960 DNA polymerase III su 31.8 4.2E+02 0.009 32.2 11.5 73 79-153 118-193 (702)
316 PF00977 His_biosynth: Histidi 31.8 2E+02 0.0044 29.4 8.1 70 64-134 147-219 (229)
317 PF13518 HTH_28: Helix-turn-he 31.7 74 0.0016 24.1 3.8 33 250-284 5-37 (52)
318 TIGR03704 PrmC_rel_meth putati 31.7 4.4E+02 0.0095 27.3 10.7 52 33-87 110-161 (251)
319 PRK02649 ppnK inorganic polyph 31.6 1.7E+02 0.0036 31.7 7.7 101 35-154 3-126 (305)
320 PRK06895 putative anthranilate 31.4 57 0.0012 32.1 3.9 31 34-64 2-32 (190)
321 PRK07455 keto-hydroxyglutarate 31.3 4.4E+02 0.0094 26.2 10.2 86 57-143 14-99 (187)
322 PHA01976 helix-turn-helix prot 31.2 54 0.0012 26.4 3.1 33 247-280 4-36 (67)
323 PF02581 TMP-TENI: Thiamine mo 31.2 2.9E+02 0.0063 26.9 8.8 69 61-133 100-175 (180)
324 PRK01033 imidazole glycerol ph 30.9 2.5E+02 0.0053 29.3 8.7 72 63-135 29-103 (258)
325 cd08185 Fe-ADH1 Iron-containin 30.8 2.4E+02 0.0052 30.9 9.0 63 34-101 26-102 (380)
326 PF01993 MTD: methylene-5,6,7, 30.7 1.2E+02 0.0026 32.2 6.1 65 72-139 54-118 (276)
327 PF12844 HTH_19: Helix-turn-he 30.6 43 0.00094 26.7 2.4 31 249-280 3-33 (64)
328 PRK03378 ppnK inorganic polyph 30.4 1.8E+02 0.0038 31.3 7.6 101 35-154 7-121 (292)
329 PRK06543 nicotinate-nucleotide 30.3 7.2E+02 0.016 26.8 12.5 90 35-131 161-261 (281)
330 PRK11359 cyclic-di-GMP phospho 30.3 5.2E+02 0.011 30.4 12.3 97 49-148 683-793 (799)
331 cd05212 NAD_bind_m-THF_DH_Cycl 30.2 1.7E+02 0.0037 28.0 6.8 54 31-91 26-83 (140)
332 cd03818 GT1_ExpC_like This fam 30.1 4.9E+02 0.011 28.0 11.1 75 67-152 292-366 (396)
333 PF03328 HpcH_HpaI: HpcH/HpaI 29.9 4.2E+02 0.0091 26.6 10.0 83 65-149 9-106 (221)
334 cd04726 KGPDC_HPS 3-Keto-L-gul 29.9 1.7E+02 0.0037 28.5 7.0 83 65-149 11-99 (202)
335 TIGR01302 IMP_dehydrog inosine 29.8 4E+02 0.0087 30.2 10.8 99 32-134 235-355 (450)
336 PRK04452 acetyl-CoA decarbonyl 29.8 7.8E+02 0.017 27.0 13.8 111 31-149 47-171 (319)
337 PRK04128 1-(5-phosphoribosyl)- 29.5 2.3E+02 0.005 29.1 8.1 65 66-134 145-210 (228)
338 PRK04338 N(2),N(2)-dimethylgua 29.4 2.8E+02 0.0061 30.9 9.2 78 34-118 82-162 (382)
339 PF07638 Sigma70_ECF: ECF sigm 29.4 1E+02 0.0022 30.3 5.3 45 233-277 126-170 (185)
340 PRK13111 trpA tryptophan synth 29.2 4.7E+02 0.01 27.5 10.5 97 36-136 121-229 (258)
341 PRK06559 nicotinate-nucleotide 29.1 4.9E+02 0.011 28.2 10.6 90 35-131 169-265 (290)
342 PRK14024 phosphoribosyl isomer 29.1 3.1E+02 0.0067 28.2 9.0 78 67-145 149-238 (241)
343 PRK14723 flhF flagellar biosyn 29.1 3.8E+02 0.0082 32.9 10.8 103 34-137 216-333 (767)
344 TIGR00381 cdhD CO dehydrogenas 29.1 8.9E+02 0.019 27.4 12.9 112 31-149 111-236 (389)
345 COG0742 N6-adenine-specific me 29.1 1.1E+02 0.0023 31.1 5.4 53 34-87 67-122 (187)
346 cd02801 DUS_like_FMN Dihydrour 28.9 5.9E+02 0.013 25.3 10.9 90 40-131 106-209 (231)
347 PRK12723 flagellar biosynthesi 28.9 7.5E+02 0.016 27.7 12.4 92 32-125 205-306 (388)
348 cd03825 GT1_wcfI_like This fam 28.9 1.7E+02 0.0036 30.1 7.1 75 34-112 1-82 (365)
349 cd02940 DHPD_FMN Dihydropyrimi 28.9 3.3E+02 0.0072 28.9 9.4 38 95-132 239-278 (299)
350 TIGR03061 pip_yhgE_Nterm YhgE/ 28.9 1.2E+02 0.0027 29.0 5.7 52 31-85 41-102 (164)
351 PRK04302 triosephosphate isome 28.8 6.2E+02 0.014 25.6 11.4 40 96-135 162-202 (223)
352 PRK10867 signal recognition pa 28.6 5.5E+02 0.012 29.3 11.5 53 33-87 129-191 (433)
353 cd03802 GT1_AviGT4_like This f 28.6 5.8E+02 0.013 25.9 10.9 73 66-150 234-306 (335)
354 cd04949 GT1_gtfA_like This fam 28.5 5E+02 0.011 27.2 10.7 55 93-152 291-345 (372)
355 TIGR00696 wecB_tagA_cpsF bacte 28.5 2.5E+02 0.0055 27.9 7.9 77 31-111 46-130 (177)
356 cd01948 EAL EAL domain. This d 28.5 2.1E+02 0.0046 28.0 7.4 89 49-140 137-239 (240)
357 TIGR02082 metH 5-methyltetrahy 28.5 4E+02 0.0087 34.3 11.3 102 34-137 733-847 (1178)
358 PHA02943 hypothetical protein; 28.4 72 0.0016 31.5 3.9 36 248-283 14-51 (165)
359 COG1927 Mtd Coenzyme F420-depe 28.3 3.6E+02 0.0078 28.3 8.9 81 55-138 29-118 (277)
360 PF13412 HTH_24: Winged helix- 28.1 1.1E+02 0.0023 23.3 4.1 35 248-283 6-41 (48)
361 TIGR01302 IMP_dehydrog inosine 28.1 2.1E+02 0.0045 32.4 8.1 54 79-133 236-291 (450)
362 PRK09978 DNA-binding transcrip 28.1 51 0.0011 35.1 3.1 32 257-290 157-188 (274)
363 PRK11572 copper homeostasis pr 27.9 3.2E+02 0.0069 29.0 8.8 92 41-134 98-197 (248)
364 PF13443 HTH_26: Cro/C1-type H 27.9 47 0.001 26.4 2.2 32 249-281 1-32 (63)
365 TIGR01306 GMP_reduct_2 guanosi 27.7 4.4E+02 0.0096 28.9 10.2 56 80-135 109-165 (321)
366 cd03801 GT1_YqgM_like This fam 27.7 6.1E+02 0.013 25.1 12.0 65 80-151 276-340 (374)
367 COG0159 TrpA Tryptophan syntha 27.7 1.9E+02 0.0041 31.0 7.1 54 94-147 81-141 (265)
368 PRK06552 keto-hydroxyglutarate 27.6 5.5E+02 0.012 26.3 10.3 92 51-144 8-103 (213)
369 PRK05637 anthranilate synthase 27.5 1E+02 0.0022 31.3 5.0 49 34-85 2-50 (208)
370 cd03804 GT1_wbaZ_like This fam 27.4 4.6E+02 0.01 27.3 10.2 103 34-152 222-326 (351)
371 PRK08185 hypothetical protein; 27.4 2.2E+02 0.0047 30.6 7.6 84 63-153 148-242 (283)
372 PRK03372 ppnK inorganic polyph 27.3 5.6E+02 0.012 27.8 10.8 102 34-154 6-130 (306)
373 TIGR00095 RNA methyltransferas 27.2 2.1E+02 0.0045 28.4 7.1 67 35-101 74-143 (189)
374 PRK11923 algU RNA polymerase s 27.1 1.3E+02 0.0027 29.2 5.5 43 226-271 125-167 (193)
375 TIGR03365 Bsubt_queE 7-cyano-7 27.1 5.4E+02 0.012 26.5 10.3 100 35-139 75-187 (238)
376 TIGR01306 GMP_reduct_2 guanosi 27.1 8.6E+02 0.019 26.7 12.4 98 35-135 110-227 (321)
377 PRK00811 spermidine synthase; 27.1 4.6E+02 0.0099 27.7 10.0 57 32-91 99-162 (283)
378 TIGR00308 TRM1 tRNA(guanine-26 27.0 4.7E+02 0.01 29.1 10.4 91 34-130 70-168 (374)
379 TIGR02397 dnaX_nterm DNA polym 27.0 7.7E+02 0.017 26.1 12.4 71 80-152 118-191 (355)
380 PF01726 LexA_DNA_bind: LexA D 26.9 1.3E+02 0.0027 25.2 4.6 25 260-284 27-51 (65)
381 PRK13585 1-(5-phosphoribosyl)- 26.9 3.1E+02 0.0067 27.7 8.5 78 65-144 150-237 (241)
382 PRK03659 glutathione-regulated 26.9 2.7E+02 0.0059 32.7 9.0 94 32-134 422-517 (601)
383 cd01568 QPRTase_NadC Quinolina 26.8 5.7E+02 0.012 27.0 10.6 93 35-133 153-253 (269)
384 PRK08649 inosine 5-monophospha 26.6 9.1E+02 0.02 26.9 12.5 66 65-134 142-214 (368)
385 TIGR03449 mycothiol_MshA UDP-N 26.6 8E+02 0.017 26.1 12.4 107 34-151 253-367 (405)
386 cd08176 LPO Lactadehyde:propan 26.6 4.1E+02 0.009 29.1 9.9 63 34-101 29-104 (377)
387 cd04951 GT1_WbdM_like This fam 26.6 5.2E+02 0.011 26.4 10.2 105 33-151 219-325 (360)
388 cd00532 MGS-like MGS-like doma 26.5 1.4E+02 0.0031 26.9 5.4 22 40-61 8-29 (112)
389 cd08194 Fe-ADH6 Iron-containin 26.5 4.4E+02 0.0095 28.9 10.1 63 34-101 24-99 (375)
390 PRK10415 tRNA-dihydrouridine s 26.5 5E+02 0.011 28.1 10.3 95 37-133 113-222 (321)
391 PF04131 NanE: Putative N-acet 26.5 1.7E+02 0.0037 29.9 6.2 69 57-133 45-116 (192)
392 PRK07765 para-aminobenzoate sy 26.5 93 0.002 31.6 4.6 78 34-112 1-82 (214)
393 PRK08072 nicotinate-nucleotide 26.4 8.2E+02 0.018 26.2 11.9 90 35-132 160-257 (277)
394 cd02810 DHOD_DHPD_FMN Dihydroo 26.4 4.8E+02 0.01 27.1 10.0 38 95-132 230-269 (289)
395 cd04724 Tryptophan_synthase_al 26.4 4.1E+02 0.0089 27.4 9.3 102 32-136 103-216 (242)
396 cd08170 GlyDH Glycerol dehydro 26.3 3.2E+02 0.007 29.5 9.0 75 34-113 23-108 (351)
397 PRK04457 spermidine synthase; 26.2 6.8E+02 0.015 26.1 11.0 52 33-87 90-144 (262)
398 PLN02716 nicotinate-nucleotide 26.2 4.9E+02 0.011 28.5 10.1 96 36-131 173-286 (308)
399 PRK05670 anthranilate synthase 26.1 86 0.0019 30.8 4.1 48 36-85 2-49 (189)
400 TIGR01361 DAHP_synth_Bsub phos 26.1 2E+02 0.0044 30.2 7.1 74 66-140 148-235 (260)
401 PRK15490 Vi polysaccharide bio 26.1 7.6E+02 0.016 29.4 12.2 103 33-147 429-533 (578)
402 PRK09860 putative alcohol dehy 25.8 4.1E+02 0.0088 29.4 9.7 63 34-101 32-107 (383)
403 PRK06106 nicotinate-nucleotide 25.7 3.9E+02 0.0085 28.7 9.2 89 36-131 167-262 (281)
404 PRK11036 putative S-adenosyl-L 25.6 6.4E+02 0.014 25.7 10.6 66 33-101 66-135 (255)
405 CHL00101 trpG anthranilate syn 25.5 82 0.0018 31.1 3.9 48 36-85 2-49 (190)
406 PRK09283 delta-aminolevulinic 25.5 1.8E+02 0.0039 31.9 6.6 66 63-131 224-290 (323)
407 cd01573 modD_like ModD; Quinol 25.4 7.9E+02 0.017 26.1 11.4 70 60-134 187-257 (272)
408 PRK09490 metH B12-dependent me 25.4 4.3E+02 0.0094 34.2 10.8 101 34-136 752-865 (1229)
409 PF00497 SBP_bac_3: Bacterial 25.4 2.1E+02 0.0046 27.0 6.6 52 32-87 109-160 (225)
410 PRK14076 pnk inorganic polypho 25.3 2.5E+02 0.0053 33.0 8.2 57 80-155 349-407 (569)
411 cd08181 PPD-like 1,3-propanedi 25.3 5.1E+02 0.011 28.2 10.2 63 34-101 26-102 (357)
412 TIGR01425 SRP54_euk signal rec 25.3 6.2E+02 0.013 28.9 11.1 54 32-87 127-190 (429)
413 PRK05286 dihydroorotate dehydr 25.2 2.2E+02 0.0048 31.0 7.4 58 95-152 276-342 (344)
414 PF03102 NeuB: NeuB family; I 25.2 2.6E+02 0.0057 29.3 7.6 92 47-143 59-160 (241)
415 TIGR00417 speE spermidine synt 25.1 5.2E+02 0.011 26.9 9.9 56 33-91 96-157 (270)
416 PRK07114 keto-hydroxyglutarate 25.1 7.6E+02 0.016 25.6 10.9 91 51-144 10-106 (222)
417 PRK02083 imidazole glycerol ph 25.1 3.8E+02 0.0083 27.5 8.8 72 63-135 29-103 (253)
418 PRK13609 diacylglycerol glucos 25.0 8.6E+02 0.019 25.9 13.2 105 33-151 230-337 (380)
419 COG2022 ThiG Uncharacterized e 24.9 4.6E+02 0.0099 27.9 9.1 116 32-151 99-232 (262)
420 cd03798 GT1_wlbH_like This fam 24.9 6.9E+02 0.015 24.8 10.5 53 94-152 292-344 (377)
421 PLN02335 anthranilate synthase 24.8 82 0.0018 32.2 3.8 51 33-85 18-68 (222)
422 PLN02823 spermine synthase 24.8 1.5E+02 0.0033 32.4 6.1 54 34-90 128-187 (336)
423 PRK04539 ppnK inorganic polyph 24.8 3.6E+02 0.0079 29.0 8.8 56 80-154 69-126 (296)
424 PRK13586 1-(5-phosphoribosyl)- 24.8 3.5E+02 0.0077 27.9 8.5 68 65-134 147-217 (232)
425 cd03785 GT1_MurG MurG is an N- 24.6 8E+02 0.017 25.4 12.7 65 80-151 253-323 (350)
426 COG4122 Predicted O-methyltran 24.6 2.4E+02 0.0052 29.2 7.1 62 29-91 80-144 (219)
427 PLN02274 inosine-5'-monophosph 24.6 2.8E+02 0.0061 32.1 8.4 54 80-134 261-316 (505)
428 COG2247 LytB Putative cell wal 24.6 7.7E+02 0.017 27.3 11.1 53 88-140 105-166 (337)
429 TIGR01859 fruc_bis_ald_ fructo 24.5 2.7E+02 0.0059 29.7 7.8 84 63-153 152-244 (282)
430 PRK13143 hisH imidazole glycer 24.3 1.7E+02 0.0036 29.2 5.8 44 34-85 1-44 (200)
431 COG2200 Rtn c-di-GMP phosphodi 24.3 7.4E+02 0.016 25.6 10.8 112 33-147 121-250 (256)
432 PRK10060 RNase II stability mo 24.3 5.7E+02 0.012 30.2 11.1 98 48-148 545-656 (663)
433 PRK01185 ppnK inorganic polyph 24.2 5E+02 0.011 27.6 9.7 101 34-154 1-107 (271)
434 TIGR03765 ICE_PFL_4695 integra 24.2 3.7E+02 0.008 25.0 7.4 69 35-112 26-99 (105)
435 PRK09940 transcriptional regul 24.1 85 0.0018 33.1 3.8 31 257-289 149-179 (253)
436 PRK14994 SAM-dependent 16S rib 24.1 2.4E+02 0.0052 30.3 7.3 89 34-125 38-132 (287)
437 cd00405 PRAI Phosphoribosylant 24.0 3.4E+02 0.0074 26.9 8.0 50 79-131 120-177 (203)
438 PF00290 Trp_syntA: Tryptophan 23.7 1.3E+02 0.0028 31.9 5.1 54 93-146 73-133 (259)
439 cd02809 alpha_hydroxyacid_oxid 23.7 6.8E+02 0.015 26.6 10.6 69 63-134 180-255 (299)
440 COG2109 BtuR ATP:corrinoid ade 23.6 2.4E+02 0.0052 29.0 6.7 53 69-123 114-171 (198)
441 PF07374 DUF1492: Protein of u 23.5 1.3E+02 0.0029 26.9 4.5 46 232-279 47-92 (100)
442 PRK03522 rumB 23S rRNA methylu 23.5 4E+02 0.0088 28.4 8.9 79 33-117 195-277 (315)
443 cd03808 GT1_cap1E_like This fa 23.3 7.4E+02 0.016 24.6 10.3 52 94-151 277-328 (359)
444 cd06171 Sigma70_r4 Sigma70, re 23.2 1.3E+02 0.0028 21.8 3.8 32 248-279 16-47 (55)
445 cd00452 KDPG_aldolase KDPG and 23.2 5.4E+02 0.012 25.3 9.1 68 61-134 102-170 (190)
446 PRK11829 biofilm formation reg 23.1 6E+02 0.013 29.6 10.9 96 48-146 543-652 (660)
447 PRK13695 putative NTPase; Prov 23.0 5E+02 0.011 24.8 8.7 71 78-149 95-171 (174)
448 PRK05567 inosine 5'-monophosph 22.9 2.8E+02 0.006 31.8 7.9 64 67-133 230-295 (486)
449 PRK14967 putative methyltransf 22.9 7.6E+02 0.016 24.7 10.3 47 35-86 61-108 (223)
450 PF01729 QRPTase_C: Quinolinat 22.7 2.6E+02 0.0057 27.6 6.7 55 95-150 67-122 (169)
451 TIGR00737 nifR3_yhdG putative 22.6 7.7E+02 0.017 26.3 10.8 93 39-133 113-220 (319)
452 PRK14024 phosphoribosyl isomer 22.5 8.5E+02 0.018 25.0 11.1 85 63-148 31-120 (241)
453 PLN00191 enolase 22.5 5.7E+02 0.012 29.3 10.2 82 65-147 296-379 (457)
454 cd00093 HTH_XRE Helix-turn-hel 22.4 91 0.002 22.3 2.7 30 249-279 3-32 (58)
455 smart00052 EAL Putative diguan 22.4 4E+02 0.0086 26.0 8.1 89 49-140 138-240 (241)
456 PF02796 HTH_7: Helix-turn-hel 22.4 1.1E+02 0.0024 23.4 3.2 30 249-280 13-42 (45)
457 TIGR01579 MiaB-like-C MiaB-lik 22.4 5.6E+02 0.012 28.4 10.0 92 44-149 11-107 (414)
458 cd05014 SIS_Kpsf KpsF-like pro 22.3 3.2E+02 0.0069 24.4 6.8 87 43-137 12-100 (128)
459 cd08551 Fe-ADH iron-containing 22.3 4.8E+02 0.01 28.4 9.3 63 34-101 24-99 (370)
460 PRK12727 flagellar biosynthesi 22.2 6.9E+02 0.015 29.6 10.8 54 33-87 380-436 (559)
461 cd03806 GT1_ALG11_like This fa 22.1 1E+03 0.022 26.3 12.0 107 33-151 273-391 (419)
462 PF13941 MutL: MutL protein 22.1 1.2E+03 0.027 26.8 15.4 121 32-154 75-211 (457)
463 PRK03562 glutathione-regulated 22.1 3.8E+02 0.0083 31.7 9.1 91 32-132 422-515 (621)
464 cd01147 HemV-2 Metal binding p 22.0 2.3E+02 0.0049 28.5 6.4 40 71-115 68-107 (262)
465 PRK13890 conjugal transfer pro 22.0 80 0.0017 29.4 2.8 34 249-283 9-42 (120)
466 PF01564 Spermine_synth: Sperm 21.9 1.3E+02 0.0029 31.2 4.7 60 31-93 98-164 (246)
467 cd04739 DHOD_like Dihydroorota 21.9 1E+03 0.022 25.7 12.1 58 95-152 226-290 (325)
468 PLN02727 NAD kinase 21.8 3.3E+02 0.0072 34.1 8.5 103 33-154 678-801 (986)
469 PRK07994 DNA polymerase III su 21.8 2.1E+02 0.0044 34.4 6.7 72 79-152 119-193 (647)
470 COG0313 Predicted methyltransf 21.7 7.1E+02 0.015 26.9 10.0 83 33-118 30-118 (275)
471 PF00196 GerE: Bacterial regul 21.6 1.7E+02 0.0036 23.1 4.3 39 249-288 10-50 (58)
472 PRK05031 tRNA (uracil-5-)-meth 21.6 1.1E+03 0.024 25.9 12.0 77 35-116 230-322 (362)
473 PRK06806 fructose-bisphosphate 21.6 4E+02 0.0087 28.5 8.3 70 62-133 151-228 (281)
474 TIGR03070 couple_hipB transcri 21.6 96 0.0021 23.6 2.8 32 249-281 6-37 (58)
475 cd08171 GlyDH-like2 Glycerol d 21.5 3E+02 0.0065 29.8 7.5 75 34-113 23-109 (345)
476 cd06338 PBP1_ABC_ligand_bindin 21.4 9.3E+02 0.02 25.0 12.0 64 46-113 158-229 (345)
477 PF01022 HTH_5: Bacterial regu 21.3 1.2E+02 0.0025 23.3 3.2 34 249-283 6-39 (47)
478 PF02254 TrkA_N: TrkA-N domain 21.3 5.5E+02 0.012 22.4 8.7 74 36-118 1-74 (116)
479 PRK08318 dihydropyrimidine deh 21.3 9.5E+02 0.02 26.7 11.6 58 95-152 239-306 (420)
480 COG0626 MetC Cystathionine bet 21.3 5.3E+02 0.011 29.1 9.5 121 6-132 71-204 (396)
481 COG0461 PyrE Orotate phosphori 21.2 2.4E+02 0.0051 29.0 6.2 66 29-118 108-175 (201)
482 cd04733 OYE_like_2_FMN Old yel 21.2 3.1E+02 0.0067 29.6 7.5 39 95-133 281-319 (338)
483 cd03799 GT1_amsK_like This is 21.2 8.8E+02 0.019 24.6 11.1 66 80-151 256-326 (355)
484 TIGR03572 WbuZ glycosyl amidat 21.2 5.5E+02 0.012 25.9 9.0 65 67-134 156-226 (232)
485 cd08182 HEPD Hydroxyethylphosp 21.2 4.7E+02 0.01 28.5 9.0 63 34-101 24-96 (367)
486 cd08186 Fe-ADH8 Iron-containin 21.0 5E+02 0.011 28.6 9.2 63 34-101 27-103 (383)
487 PRK00230 orotidine 5'-phosphat 20.9 3.3E+02 0.0072 27.9 7.3 77 64-143 12-95 (230)
488 PF11072 DUF2859: Protein of u 20.9 4.6E+02 0.01 25.6 7.8 69 34-111 63-136 (142)
489 PRK06843 inosine 5-monophospha 20.7 4.1E+02 0.009 30.0 8.5 54 79-133 165-220 (404)
490 PRK07414 cob(I)yrinic acid a,c 20.7 2.9E+02 0.0062 27.8 6.6 46 78-123 114-164 (178)
491 PRK13789 phosphoribosylamine-- 20.7 7.3E+02 0.016 27.9 10.6 61 33-95 4-84 (426)
492 TIGR02149 glgA_Coryne glycogen 20.7 9.9E+02 0.021 25.0 12.1 75 66-151 271-351 (388)
493 PRK00771 signal recognition pa 20.7 1E+03 0.022 27.2 11.6 56 32-88 122-184 (437)
494 PRK14077 pnk inorganic polypho 20.7 3.9E+02 0.0084 28.7 8.0 103 33-154 10-122 (287)
495 PRK05848 nicotinate-nucleotide 20.6 3.1E+02 0.0066 29.3 7.2 53 96-149 170-223 (273)
496 cd04823 ALAD_PBGS_aspartate_ri 20.6 2.5E+02 0.0055 30.8 6.5 66 64-132 222-288 (320)
497 cd01572 QPRTase Quinolinate ph 20.5 1E+03 0.022 25.2 11.6 112 1-132 131-251 (268)
498 PLN02476 O-methyltransferase 20.4 4.1E+02 0.009 28.4 8.1 59 30-88 140-203 (278)
499 PRK14114 1-(5-phosphoribosyl)- 20.4 4.1E+02 0.0089 27.6 8.0 68 66-134 146-222 (241)
500 PRK07428 nicotinate-nucleotide 20.4 3.2E+02 0.007 29.4 7.3 40 109-149 198-237 (288)
No 1
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.97 E-value=5.5e-32 Score=295.47 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=110.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC--LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~--gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
+++||||||++.+|++|+.++.|. +++ |.+|.||.+|++.+++.. |||||+||+||+|||++|++.+++ .+++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 479999999999999999999986 555 469999999999999887 999999999999999999999974 58899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+||||++++|+++++|+++|+.|||+||++.++|..++.++..+.
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887553
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=3.2e-20 Score=187.92 Aligned_cols=119 Identities=30% Similarity=0.506 Sum_probs=111.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIM 111 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~IPVII 111 (637)
++|||||||+.+++.|...|+..||.|..+.++.+|++.+... ||+||+|++||++||+++|++||. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999999999999999999998753 999999999999999999999984 36789999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
+|+.++.+....+++.||+|||+|||+++||...++.++++...
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 99999999999999999999999999999999999999987643
No 3
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.82 E-value=7.7e-19 Score=174.49 Aligned_cols=119 Identities=29% Similarity=0.468 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~-gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
++|||||||+.+.+.-+.+++.. +|. |.+|.+.++|..++++.. |||||+|+.||+.+|++|+..++. ...+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999976 665 569999999999999887 899999999999999999999984 4578899
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
++|+-+|.+.+.+|++.||.|||+|||..+.|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877664
No 4
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.81 E-value=5.7e-19 Score=176.38 Aligned_cols=169 Identities=30% Similarity=0.350 Sum_probs=139.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~g-y~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~IPVI 110 (637)
++|+||||++.+|.+|+.+|.... ++ +.++.++.++++.++... ||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 579999999999999999998874 66 458888999999987766 99999999999999999999997 56889999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccc-----c-CCcccccc-CCCChhhHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----S-GSLEETDH-HKRGSDEIEYAS 183 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~-----~-~~le~~~~-~kl~~~Eie~ls 183 (637)
++|.+++..++.++++.||.+|++|..++++|..+++.+..+.......... . ........ ..++.+|.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998765332211100 0 00011111 368999999999
Q ss_pred hhccCCcchhhhhhhcccccc
Q 006649 184 SVNEGTEGTFKAQRKRISAKE 204 (637)
Q Consensus 184 sv~eg~~~~vk~~~k~Is~k~ 204 (637)
.+.+|...+.++....++.++
T Consensus 159 lla~G~snkeIA~~L~iS~~T 179 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEKT 179 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHhH
Confidence 999999998888888877653
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.80 E-value=2.4e-19 Score=175.22 Aligned_cols=169 Identities=23% Similarity=0.304 Sum_probs=139.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~IPVI 110 (637)
...-|-|||||..+|+.+..+|+..||.+..+.++.+.|...... .|-++|+|++||+|+|+++..++. ....+|||
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcCCCCCEE
Confidence 345699999999999999999999999999999999999985444 489999999999999999999996 45789999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCccccccCCCChhhHHHHhhhccCCc
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~~~le~~~~~kl~~~Eie~lssv~eg~~ 190 (637)
++|++.|.....+|++.||.|||.||++...|..+++++++.......+.... .........++.+|++++..+-.|.-
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~-~~~~~~l~tLT~RERqVl~~vV~G~~ 159 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQ-AAIRARLATLTPRERQVLDLVVRGLM 159 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhcCHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999987643322221110 00112345678999999999999988
Q ss_pred chhhhhhhccccc
Q 006649 191 GTFKAQRKRISAK 203 (637)
Q Consensus 191 ~~vk~~~k~Is~k 203 (637)
++.++....|+..
T Consensus 160 NKqIA~dLgiS~r 172 (202)
T COG4566 160 NKQIAFDLGISER 172 (202)
T ss_pred cHHHHHHcCCchh
Confidence 7777776666543
No 6
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=2.7e-18 Score=188.63 Aligned_cols=119 Identities=41% Similarity=0.628 Sum_probs=112.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~IPVIIL 112 (637)
.+|||||||+.+|+.+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|||++++++++ ..+++|||++
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~--~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP--FDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 47999999999999999999999999999999999999998764 99999999999999999999996 4588999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|++.+.+.+.+|++.||.|||.|||+.++|..++++++..+.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 7
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.75 E-value=2.9e-17 Score=143.11 Aligned_cols=110 Identities=37% Similarity=0.628 Sum_probs=104.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEe
Q 006649 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMS 113 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIILS 113 (637)
||||||++..++.++.+|+..++ .|..+.++.++++.++... ||+||+|+.||+++|+++++.|+.. +.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999998899 9999999999999998876 9999999999999999999999744 689999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq 147 (637)
...+.....++++.|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998774
No 8
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.69 E-value=5.9e-16 Score=153.86 Aligned_cols=121 Identities=25% Similarity=0.378 Sum_probs=110.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~-gy-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~I 107 (637)
|..++||||||++.+++.+..+|... ++ .|..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+..
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 56789999999999999999999864 66 4679999999999998765 999999999999999999999975 4678
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+||++|++.+.+.+.++++.||.+||.||++.++|..+++++..++
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654
No 9
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-15 Score=135.97 Aligned_cols=119 Identities=38% Similarity=0.585 Sum_probs=104.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~-EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPV 109 (637)
.+.+||||||++..+..++.+|...++.|..+.++. +|++.++... .||+|++|+.||++||++++++++.. ..+|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 457999999999999999999999999999999995 9999998751 39999999999999999999999865 67888
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 151 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eE-L~~~Lq~Vlr 151 (637)
|++|++.+.....++++.|+.+|+.||+...+ |...+.+.+.
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 99999999887788899999999999977666 7777775543
No 10
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.68 E-value=7e-16 Score=151.54 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=135.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhc-cCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY-N-VTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy-~-V~~asng~EALelLre~~~~pDLVIlDI~MPd---mDGlELLe~Ir~-~~~ 106 (637)
+++||||||++..+..++.+|...++ . +..+.++.++++.+.... ||+||+|+.||+ ++|++++++|+. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987543 3 668999999999988655 999999999999 599999999974 478
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccc---cCCccccccCCCChhhHHHHh
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN---SGSLEETDHHKRGSDEIEYAS 183 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~---~~~le~~~~~kl~~~Eie~ls 183 (637)
+|||++|...+.....++++.||.+||.||.+.++|..+++.+..+.......... ...........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999887654322111000 000000112358999999999
Q ss_pred hhccCCcchhhhhhhccccc
Q 006649 184 SVNEGTEGTFKAQRKRISAK 203 (637)
Q Consensus 184 sv~eg~~~~vk~~~k~Is~k 203 (637)
.+.+|...+.++....++.+
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~ 180 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIK 180 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHH
Confidence 99999888888877777654
No 11
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.68 E-value=6.4e-16 Score=181.36 Aligned_cols=152 Identities=26% Similarity=0.326 Sum_probs=128.1
Q ss_pred ChHHHHHHHHcCC-----C--CCCCcccccccCCC------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006649 1 MAALQRIVQSSGG-----S--GYGSSRAADVAVPD------------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (637)
Q Consensus 1 la~~~~~v~~mgG-----s--~~~~~~~~~~~~~~------------~fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~ 61 (637)
|+|++++++.||| + +.|+++.+.+.... ....+++||||||++..+..++.+|...++.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 5899999999999 3 33444433332211 011457999999999999999999998899999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~e 140 (637)
.+.++.+|++.+... ..||+||+|+.||+|||+++++.|+. .+.+|||++|+..+.+...+++..|+++||.||++.+
T Consensus 710 ~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 999999999988643 24899999999999999999999975 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 006649 141 ELKNIWQHVVRKR 153 (637)
Q Consensus 141 EL~~~Lq~Vlrk~ 153 (637)
+|..++.++++..
T Consensus 789 ~L~~~i~~~~~~~ 801 (914)
T PRK11466 789 VLGQLLAHYLQLQ 801 (914)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887543
No 12
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.68 E-value=7.4e-16 Score=180.30 Aligned_cols=117 Identities=28% Similarity=0.420 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-----~~I 107 (637)
+++||||||++..++.++.+|...++.|..+.++.+|++.++... ||+||+|+.||+|||+++++.++.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 479999999999999999999999999999999999999998765 9999999999999999999999742 568
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|||++|++.+.+...++++.|+++||.||++.++|..+++++++
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987764
No 13
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.67 E-value=9.3e-16 Score=177.71 Aligned_cols=150 Identities=23% Similarity=0.374 Sum_probs=123.7
Q ss_pred ChHHHHHHHHcCC-----C--CCCCcccccccCCC------------C-CCCccEEEEEeCCHHHHHHHHHHHHhCCCeE
Q 006649 1 MAALQRIVQSSGG-----S--GYGSSRAADVAVPD------------Q-FPAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (637)
Q Consensus 1 la~~~~~v~~mgG-----s--~~~~~~~~~~~~~~------------~-fp~girVLIVDDD~~~re~Lk~lL~~~gy~V 60 (637)
|+|++++|+.||| | +.|+.+...+..+. . -..+++||||||++..+..++.+|+..++.|
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 5899999999999 3 44444444333221 0 1135899999999999999999999999999
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC-CcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~-IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
..+.++.+|++.+.... ||+||+|+.||+|||++++++|+.. .. .|||++|++... ...+++..|+++||.||
T Consensus 553 ~~a~~~~eal~~~~~~~--~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP 629 (779)
T PRK11091 553 DVAMTGKEALEMFDPDE--YDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKP 629 (779)
T ss_pred EEECCHHHHHHHhhcCC--CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECC
Confidence 99999999999998654 9999999999999999999999754 34 488889887654 46789999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 006649 137 IREEELKNIWQHVVRKR 153 (637)
Q Consensus 137 is~eEL~~~Lq~Vlrk~ 153 (637)
++.++|..++++++...
T Consensus 630 ~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 630 LSVPALTAMIKKFWDTQ 646 (779)
T ss_pred CCHHHHHHHHHHHhccc
Confidence 99999999999886543
No 14
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=3.7e-16 Score=165.33 Aligned_cols=120 Identities=36% Similarity=0.517 Sum_probs=110.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c---CCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E---MDL 107 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~---~~I 107 (637)
..++||+|||++..+..+..+|+..+|.|.+|.++++|+++..++. +|+||+|++||+|||+++|.+|+. . ..+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 4579999999999999999999999999999999999999998876 999999999999999999999975 3 468
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|||++|++.|.+...+|+..||+|||.||+++.+|...+...+..+
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998886444333
No 15
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=3.6e-15 Score=144.77 Aligned_cols=118 Identities=28% Similarity=0.383 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
++||||||++..++.+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999998999999999999998887654 9999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998887653
No 16
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.65 E-value=1.5e-15 Score=178.87 Aligned_cols=150 Identities=27% Similarity=0.352 Sum_probs=127.6
Q ss_pred ChHHHHHHHHcCC-----C--CCCCcccccccCCC------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006649 1 MAALQRIVQSSGG-----S--GYGSSRAADVAVPD------------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (637)
Q Consensus 1 la~~~~~v~~mgG-----s--~~~~~~~~~~~~~~------------~fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~ 61 (637)
|+|++++++.||| + +.|+++.+.+.+.. ....+.+||||||++..+..++.+|+..+|.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 5899999999999 2 34444444433221 011345899999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC---CcEEEEeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~---IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
.+.++.+|++.+.... ||+||+|+.||++||+++++.|+.. .. +|||++|++.+.+...+++..|+++||.||+
T Consensus 731 ~~~~~~~a~~~l~~~~--~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQHA--FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999998754 9999999999999999999999753 22 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006649 138 REEELKNIWQHVVRK 152 (637)
Q Consensus 138 s~eEL~~~Lq~Vlrk 152 (637)
+.++|...+.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999887654
No 17
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.65 E-value=2.9e-15 Score=178.14 Aligned_cols=120 Identities=30% Similarity=0.478 Sum_probs=111.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|++||+|||+++++.|++ .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3578999999999999999999999999999999999999998765 999999999999999999999975 4679999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|+..+.+...++++.|+++||.||++.++|..++.++.+..
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876543
No 18
>PRK09483 response regulator; Provisional
Probab=99.65 E-value=5.8e-15 Score=142.25 Aligned_cols=166 Identities=19% Similarity=0.224 Sum_probs=131.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
+++||||||++..+..++.+|... ++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~i 78 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRYTPDVKI 78 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeE
Confidence 368999999999999999999874 77765 7899999999988765 999999999999999999999964 577999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc------cccCCccccccCCCChhhHHHHh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH------ENSGSLEETDHHKRGSDEIEYAS 183 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~------~~~~~le~~~~~kl~~~Eie~ls 183 (637)
|++|...+.....+++..|+++|+.||++.++|..+++.+.++........ .............++.+|.+++.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~ 158 (217)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIML 158 (217)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHH
Confidence 999999999999999999999999999999999999999876543221110 00000111223458889999998
Q ss_pred hhccCCcchhhhhhhcc
Q 006649 184 SVNEGTEGTFKAQRKRI 200 (637)
Q Consensus 184 sv~eg~~~~vk~~~k~I 200 (637)
.+..|......+....+
T Consensus 159 ~~~~G~~~~~Ia~~l~i 175 (217)
T PRK09483 159 MITKGQKVNEISEQLNL 175 (217)
T ss_pred HHHCCCCHHHHHHHhCC
Confidence 88888666555544443
No 19
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.64 E-value=9.2e-15 Score=140.40 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
|+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999998999999999999999887655 999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+...++++.||.+|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 20
>PRK11173 two-component response regulator; Provisional
Probab=99.64 E-value=6e-15 Score=145.43 Aligned_cols=118 Identities=20% Similarity=0.419 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
.+||||||++..+..+...|+..++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEND--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 58999999999999999999998999999999999999987655 9999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887764
No 21
>PLN03029 type-a response regulator protein; Provisional
Probab=99.64 E-value=5.3e-15 Score=148.42 Aligned_cols=122 Identities=28% Similarity=0.560 Sum_probs=109.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC------------------CCceEEEEeCCCCCCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK------------------GCFDVVLSDVHMPDMD 93 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~------------------~~pDLVIlDI~MPdmD 93 (637)
..++||||||++..+..+..+|.+.+|.|.++.++.++++.+.... ..+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3479999999999999999999999999999999999999886432 1267999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 94 GFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 94 GlELLe~Ir~~---~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+++++.|+.. .++|||++|+..+.+...++++.|+.+||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 4789999999999999999999999999999999999998888876654
No 22
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.64 E-value=3.3e-15 Score=180.49 Aligned_cols=149 Identities=24% Similarity=0.444 Sum_probs=126.8
Q ss_pred ChHHHHHHHHcCC-----CCCCCcccccccCCC-----------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006649 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPD-----------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (637)
Q Consensus 1 la~~~~~v~~mgG-----s~~~~~~~~~~~~~~-----------------~fp~girVLIVDDD~~~re~Lk~lL~~~gy 58 (637)
|+|++++|+.||| +..+.+..+.+.+|- ..+..++||||||++..+..++.+|+..++
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 5899999999999 333323333332221 123457999999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 59 ~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
.|..+.++.+|++.+.... |||||+|+.||+++|+++++.++. .+.+|||++|++.+.+...++++.|+++||.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQH--YDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999997655 999999999999999999999974 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006649 138 REEELKNIWQHVVR 151 (637)
Q Consensus 138 s~eEL~~~Lq~Vlr 151 (637)
+.++|...++++..
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887654
No 23
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.64 E-value=9.9e-15 Score=140.21 Aligned_cols=118 Identities=25% Similarity=0.429 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
|+||||||++..++.+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP--YDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999988999999999999999887654 999999999999999999999975 467999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 24
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.63 E-value=8.3e-15 Score=142.31 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
|+||||||++..+..+...|...++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999887655 999999999999999999999975 468999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 25
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.63 E-value=7.9e-16 Score=158.85 Aligned_cols=116 Identities=29% Similarity=0.502 Sum_probs=106.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
++|+|||||..+...|..+|++.+..+.+|+...+|++.++..+ ||||++||.||+|+|+|++++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 58999999999999999999999988999999999999999877 999999999999999999999974 478999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|++.++ +.+++...+.|||.||++++.|.+++.++.+..
T Consensus 79 ssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 79 SSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred ecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 998755 777888889999999999999999999887543
No 26
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.63 E-value=4.5e-15 Score=173.49 Aligned_cols=118 Identities=31% Similarity=0.505 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~IPV 109 (637)
+++||||||++..+..++.+|.+.++.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+. ..++||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 478999999999999999999999999999999999999998765 999999999999999999999975 357999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|++.+.+...++++.|+++||.||++.++|..++++++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999887654
No 27
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.63 E-value=1.1e-14 Score=140.95 Aligned_cols=119 Identities=22% Similarity=0.384 Sum_probs=110.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
.++||||||++..+..+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH--VDLILLDINLPGEDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 368999999999999999999998999999999999999887654 999999999999999999999987678999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++..+.....++++.||+|||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998887653
No 28
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.62 E-value=2.4e-14 Score=138.26 Aligned_cols=118 Identities=25% Similarity=0.480 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
|+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999988999999999999999887654 9999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999887654
No 29
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.62 E-value=1.5e-14 Score=138.10 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=124.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
|+|+|+||++..+..++..|...++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999999988889886 7999999999988655 999999999999999999999975 46789999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc---ccCCccccccCCCChhhHHHHhhhccC
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---NSGSLEETDHHKRGSDEIEYASSVNEG 188 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~---~~~~le~~~~~kl~~~Eie~lssv~eg 188 (637)
+++..+.....++++.||++|+.||++.++|..+++.++++......... ............++.+|.+++..+..|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998765322111000 000001111234778888888888777
Q ss_pred Ccc
Q 006649 189 TEG 191 (637)
Q Consensus 189 ~~~ 191 (637)
...
T Consensus 159 ~~~ 161 (204)
T PRK09958 159 KDN 161 (204)
T ss_pred CCH
Confidence 543
No 30
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.62 E-value=1.3e-14 Score=141.32 Aligned_cols=117 Identities=21% Similarity=0.475 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIIL 112 (637)
|+||||||++..++.+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999999887655 9999999999999999999999754 68999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999887754
No 31
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.61 E-value=1.9e-14 Score=138.31 Aligned_cols=118 Identities=30% Similarity=0.512 Sum_probs=108.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPV 109 (637)
+++||||||++..++.+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 468999999999999999999988999999999999999887665 9999999999999999999999753 57899
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|+..+.....++++.||++|+.||++.++|...++.++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999888765
No 32
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-14 Score=159.34 Aligned_cols=121 Identities=35% Similarity=0.509 Sum_probs=112.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
...+||||||+...++.++.+|...|+.+..+.++.+|+..+.+.. ||+||+|+.||++||+++++++|.. ..+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 5679999999999999999999999999999999999999998875 9999999999999999999999743 5799
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
||++++.++.+...+||+.|+.|||.||+...+|...++..++++.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999888888777654
No 33
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.60 E-value=2.2e-14 Score=139.29 Aligned_cols=117 Identities=32% Similarity=0.519 Sum_probs=107.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
.+||||||++..++.+...|...++.+..+.++.++++.+. .. ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~--~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DS--IDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-cC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 48999999999999999999988999999999999999875 33 9999999999999999999999865559999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998887654
No 34
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.60 E-value=2.7e-14 Score=139.40 Aligned_cols=120 Identities=38% Similarity=0.598 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
..++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++..+.+|+|+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ--PDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 3579999999999999999999988999989999999999887655 99999999999999999999998667899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|++.+.+...++++.||.+||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998887653
No 35
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.60 E-value=2.6e-14 Score=139.41 Aligned_cols=118 Identities=29% Similarity=0.482 Sum_probs=108.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPV 109 (637)
.++||||||++..+..+...|+..++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhccccCCCCE
Confidence 368999999999999999999988999999999999999887654 9999999999999999999999753 57899
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988765
No 36
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.60 E-value=2e-14 Score=136.35 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=121.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~-gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
++||||||++..+..++..|... ++. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRG--VQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 68999999999999999999754 554 568999999999987654 99999999999999999999986 3679999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCccccccCCCChhhHHHHhhhccCCcc
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~~~le~~~~~kl~~~Eie~lssv~eg~~~ 191 (637)
+|...+.+...++++.||++|+.||++.++|..+++.++++.......... .........++.+|.+++..+.+|...
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~~ 155 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMAV 155 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999999999988653211111000 000111235777888888888777544
Q ss_pred hhh
Q 006649 192 TFK 194 (637)
Q Consensus 192 ~vk 194 (637)
...
T Consensus 156 ~~I 158 (196)
T PRK10360 156 KEI 158 (196)
T ss_pred HHH
Confidence 333
No 37
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.60 E-value=2.4e-14 Score=143.44 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=105.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~-gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
++||||||++.+++.++.+|... ++. +..+.++.++++.+......||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999864 565 45789999999988642234999999999999999999999974 4679999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|+..+.+.+.+++..|+.+||.||++.++|..++.++...+
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876543
No 38
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.60 E-value=2.5e-14 Score=140.99 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
.+||||||++..++.+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999998999999999999999987655 9999999999999999999999876678999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9988888889999999999999999999999998877653
No 39
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.59 E-value=3.4e-14 Score=140.94 Aligned_cols=117 Identities=25% Similarity=0.449 Sum_probs=106.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa 114 (637)
+||||||++..++.+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 7999999999999999999988999999999999999887655 99999999999999999999998767899999998
Q ss_pred c-CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 115 D-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 115 ~-~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
. .+.....++++.||++||.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 46677789999999999999999999999998887653
No 40
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.58 E-value=5.1e-14 Score=135.79 Aligned_cols=118 Identities=29% Similarity=0.426 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIIL 112 (637)
++||||||++..++.+...|...++.+..+.++.+++..+.... ||+||+|+.||+.+|+++++.++.. +.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP--PDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 68999999999999999999988999999999999999887654 9999999999999999999999754 78999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999989999999999999999999999999998876543
No 41
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.58 E-value=6.7e-14 Score=136.06 Aligned_cols=117 Identities=27% Similarity=0.412 Sum_probs=107.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM 111 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir~~-~~IPVII 111 (637)
+||||||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++.. +.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999999999999999887665 999999999998 5899999999754 6799999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887654
No 42
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.58 E-value=5.5e-14 Score=138.26 Aligned_cols=119 Identities=29% Similarity=0.491 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVII 111 (637)
..+||||||++..+..++..|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRES--FHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 368999999999999999999999999999999999999887655 9999999999999999999999754 6799999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+++..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999887653
No 43
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.57 E-value=5.3e-14 Score=139.06 Aligned_cols=116 Identities=27% Similarity=0.423 Sum_probs=99.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g-y~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
+++|+||||++..++.++.+|+..+ +. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++.....+||
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii 78 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLK--PDVVFLDIQMPRISGLELVGMLDPEHMPYIV 78 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHhcccCCCEEE
Confidence 3799999999999999999998876 33 457899999999887655 9999999999999999999998644445688
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
++|++. +++.++++.||.+||.||++.++|..++.++.+.
T Consensus 79 ~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 79 FVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888775 4678999999999999999999999999988654
No 44
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.57 E-value=1.5e-14 Score=154.26 Aligned_cols=119 Identities=22% Similarity=0.436 Sum_probs=106.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~I 107 (637)
....+||||||++..++.+..+|.+. +.+..+.++.+|+..+.+.. ||+||+|+.||+++|+++++.+++. +.+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~~-~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~ 229 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKEE-FRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYV 229 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhhc-ceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCC
Confidence 35679999999999999999999874 66778999999999887655 9999999999999999999999742 689
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|||++|++++++++.+|++.||+|||.||+++++|...+....++
T Consensus 230 ~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred cEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888765543
No 45
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.56 E-value=2e-13 Score=130.84 Aligned_cols=116 Identities=29% Similarity=0.519 Sum_probs=107.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILSa 114 (637)
|||+||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 689999999999999999988999999999999999887655 999999999999999999999974 47899999999
Q ss_pred cCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 115 ~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999887654
No 46
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.55 E-value=2.2e-13 Score=129.78 Aligned_cols=161 Identities=18% Similarity=0.268 Sum_probs=123.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
..+||||||++..+..++..|... ++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP--VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 368999999999999999999876 57764 6889999999887654 999999999999999999999975 467999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc-c---ccC-CccccccCCCChhhHHHHhh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-E---NSG-SLEETDHHKRGSDEIEYASS 184 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~-~---~~~-~le~~~~~kl~~~Eie~lss 184 (637)
|++|+..+.+...++++.|+++|+.||++.++|..+++.++++........ . ... .........++.+|.+.+..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998876532211100 0 000 00011223467778888877
Q ss_pred hccCCcchhhh
Q 006649 185 VNEGTEGTFKA 195 (637)
Q Consensus 185 v~eg~~~~vk~ 195 (637)
+.+|......+
T Consensus 161 l~~g~s~~eIa 171 (210)
T PRK09935 161 LVSGLSNKEIA 171 (210)
T ss_pred HHcCCCHHHHH
Confidence 76664444433
No 47
>PRK14084 two-component response regulator; Provisional
Probab=99.55 E-value=1e-13 Score=138.19 Aligned_cols=116 Identities=19% Similarity=0.385 Sum_probs=101.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~g-y-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVI 110 (637)
|+||||||++..++.+..+|...+ + .+..+.++.+++..+.... ||+|++|+.||+++|+++++.++.. ...+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~--~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQ--YDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998754 4 5678999999999988654 9999999999999999999999754 456788
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|++.+ ++.++++.||.+||.||++.++|..+++++.+..
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8887754 5779999999999999999999999999887553
No 48
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.54 E-value=6.1e-14 Score=140.14 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=121.4
Q ss_pred HHHHHHHHHhC---CCeEEEECCHHHHHHHHHHcCCCceEEE---EeCCCCCCCHHHHHHHHh-ccCCCcEEEEeccCCH
Q 006649 46 LRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRV 118 (637)
Q Consensus 46 re~Lk~lL~~~---gy~V~~asng~EALelLre~~~~pDLVI---lDI~MPdmDGlELLe~Ir-~~~~IPVIILSa~~d~ 118 (637)
|.+++.+|... ++.|..+.+++++++.+.... ||+|| +|+.||++||++++++|+ ..+.+|||++|++++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~--pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS--FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC--CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 67888888753 566779999999999887654 89998 688999999999999996 4578999999998877
Q ss_pred HHHHHHH-HcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCccccccCCCChhhHHHHhhhccCCcchhhhhh
Q 006649 119 SAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQR 197 (637)
Q Consensus 119 e~a~kAl-~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~~~le~~~~~kl~~~Eie~lssv~eg~~~~vk~~~ 197 (637)
..+.+++ +.||.+||.||.+.++|..+++.++++........... ........++.+|++++..+.+|...+.++..
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~--~~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQ--WYINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHH--hhccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 7676666 79999999999999999999999987653322111000 00011345899999999999999988888887
Q ss_pred hccccc
Q 006649 198 KRISAK 203 (637)
Q Consensus 198 k~Is~k 203 (637)
..++.+
T Consensus 159 L~iS~~ 164 (207)
T PRK11475 159 LERNIK 164 (207)
T ss_pred HCCCHH
Confidence 777654
No 49
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.54 E-value=1.6e-13 Score=136.69 Aligned_cols=161 Identities=12% Similarity=-0.007 Sum_probs=127.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCHHHHHHHHhc-cCCC
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIGL-EMDL 107 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy---~V~~asng~EALelLre~~~~pDLVIlDI~--MPdmDGlELLe~Ir~-~~~I 107 (637)
|.|+||||++.++++++.+|+..++ .|..+.++.+++..++... ||+||+|+. |++++|.+++++|+. .+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~--pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR--PSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC--CCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999986542 4568999999999887655 999999966 888899999999964 5789
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCe-EEeCCCCHHHHHHHHHHHHHHhhcccccccccCCccccccCCCChhhHHHHhhhc
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~D-YLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~~~le~~~~~kl~~~Eie~lssv~ 186 (637)
+||++|+.++..... ++..|+.. |+.|+.+.++|..+++.+..+........ . .....++.+|++++..+.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~-~~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------N-LPTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------c-CCcccCCHHHHHHHHHHH
Confidence 999999988876543 55556554 89999999999999999877654322110 0 011248999999999999
Q ss_pred cCCcchhhhhhhcccccc
Q 006649 187 EGTEGTFKAQRKRISAKE 204 (637)
Q Consensus 187 eg~~~~vk~~~k~Is~k~ 204 (637)
+|...+.++.+..++.++
T Consensus 151 ~G~snkeIA~~L~iS~~T 168 (207)
T PRK15411 151 AGQGTIQISDQMNIKAKT 168 (207)
T ss_pred cCCCHHHHHHHcCCCHHH
Confidence 999888888777776543
No 50
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.53 E-value=4.8e-14 Score=165.12 Aligned_cols=120 Identities=29% Similarity=0.489 Sum_probs=110.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCC
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDL 107 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~--~~I 107 (637)
+-.|.+||||||++..++..+.+|+..|.+++.+.++.+|++++. ..+.||+|++|++||.|||+|+.++||+. ..+
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~ 741 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEATREIRKKERWHL 741 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHHHHHHHHHhhcCCC
Confidence 446899999999999999999999999999999999999999997 23459999999999999999999999754 589
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
|||.|||+.+.+...+|++.|.++||.||+..+.|..++++.+
T Consensus 742 pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 742 PIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888765
No 51
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.53 E-value=7.4e-13 Score=127.14 Aligned_cols=118 Identities=28% Similarity=0.503 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
|+|||+||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEM--YALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988899989999999998887654 999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+...+.+...++++.|+++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998887654
No 52
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.52 E-value=2.4e-13 Score=137.40 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-C--CC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M--DL 107 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~--~I 107 (637)
.++||||||++..++.+..+|... ++.+ ..+.++.++++.+.... ||+||+|+.||++||+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 4454 57999999999998765 9999999999999999999999743 2 37
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|||++|+..+.....++++.|+.+|+.||++.++|...+++++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999887654
No 53
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.52 E-value=1e-13 Score=131.73 Aligned_cols=112 Identities=24% Similarity=0.454 Sum_probs=105.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILS 113 (637)
..||||||..++..|.+.+++.||.|.++.+.++++..++... |.-.++|++|.+.+|+++++.|++ ..+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999999876 999999999999999999999974 4789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~ 148 (637)
+|.+...+.+|++.||++||.||-+.+++..++.+
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999999877754
No 54
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.52 E-value=9.5e-14 Score=139.54 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=124.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH-HHHhc-cCCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIGL-EMDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELL-e~Ir~-~~~IPV 109 (637)
...+|++|||+|..+.+|+.+|+.....+..+.++.++++.+. . |||||+|+.||+++|++++ +.++. .+.++|
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~--~--~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS--S--GSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC--C--CCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 3457999999999999999999864444567889999988743 2 8999999999999999997 55664 578999
Q ss_pred EEEeccCCHHHHHHHHHc--CCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc-----ccC--CccccccCCCChhhHH
Q 006649 110 IMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSG--SLEETDHHKRGSDEIE 180 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~--GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~-----~~~--~le~~~~~kl~~~Eie 180 (637)
|++|+.++. ...++.. ||.+|+.|+.+.++|.++++.+.++......... ... .........++.+|++
T Consensus 85 vvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10100 85 LLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKE 162 (216)
T ss_pred EEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHHH
Confidence 999998773 4556664 9999999999999999999998876532211100 000 0000112357899999
Q ss_pred HHhhhccCCcchhhhhhhccccc
Q 006649 181 YASSVNEGTEGTFKAQRKRISAK 203 (637)
Q Consensus 181 ~lssv~eg~~~~vk~~~k~Is~k 203 (637)
++..+..|.....++....++..
T Consensus 163 Vl~l~~~G~s~~eIA~~L~iS~~ 185 (216)
T PRK10100 163 ILNKLRIGASNNEIARSLFISEN 185 (216)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHH
Confidence 99999999887777766665543
No 55
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.51 E-value=2e-13 Score=148.03 Aligned_cols=119 Identities=37% Similarity=0.623 Sum_probs=110.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
..++||||||++..+..++.+|...++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 4589999999999999999999998999999999999999887654 999999999999999999999964 4678999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
++|++.+.+.+.++++.|+.+||.||++.++|...++++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764
No 56
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.49 E-value=3.9e-13 Score=125.76 Aligned_cols=120 Identities=31% Similarity=0.475 Sum_probs=108.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
...+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLR--FGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 4578999999999999999999988999999999999998887654 999999999999999999999974 4678999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+++...+.+....+++.|+.+|+.||++.++|...++.++...
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998888877653
No 57
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.49 E-value=1.1e-12 Score=128.17 Aligned_cols=117 Identities=27% Similarity=0.436 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
.+||||||++..++.+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP--PDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 38999999999999999999988999999999999999987655 9999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
...+......+++.|+.+|+.||++.++|...++.++++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 999988889999999999999999999999988887664
No 58
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.49 E-value=1.7e-12 Score=122.05 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=123.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
.++|||+||++..+..+...|... ++.+ ..+.++.++++.+.... ||+||+|+.|++++|+++++.++. .+..|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 478999999999999999999865 4554 47899999998887655 999999999999999999999974 467899
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc-----ccCCccccccCCCChhhHHHHhh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSGSLEETDHHKRGSDEIEYASS 184 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~-----~~~~le~~~~~kl~~~Eie~lss 184 (637)
|++|+..+......++..|+.+|+.||++.++|...++.++++......... ............++.++.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~l 160 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILKL 160 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999887665321110000 00000111223477788888877
Q ss_pred hccCCcchhhh
Q 006649 185 VNEGTEGTFKA 195 (637)
Q Consensus 185 v~eg~~~~vk~ 195 (637)
+.++......+
T Consensus 161 ~~~g~~~~~Ia 171 (211)
T PRK15369 161 ITEGYTNRDIA 171 (211)
T ss_pred HHCCCCHHHHH
Confidence 77765544443
No 59
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=6.5e-13 Score=144.94 Aligned_cols=118 Identities=35% Similarity=0.534 Sum_probs=108.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+.+||||||++..+..+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI 80 (457)
T PRK11361 3 AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHETRTPVI 80 (457)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4568999999999999999999998999999999999999988665 999999999999999999999964 4679999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
++|++.+.+.+.++++.|+.||+.||++.++|...+++++.
T Consensus 81 ~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999988887654
No 60
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.47 E-value=8.1e-13 Score=145.16 Aligned_cols=117 Identities=35% Similarity=0.495 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
.+||||||++..+..++.+|...++.|..+.++.+|+..+.... ||+||+|+.||++||+++++.++. .+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999999999999999999999998665 999999999999999999999974 467899999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++.+.+.+.++++.|+.+||.||++.++|...+++++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 61
>PRK15115 response regulator GlrR; Provisional
Probab=99.47 E-value=5.6e-13 Score=145.26 Aligned_cols=118 Identities=30% Similarity=0.528 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
..+||||||++..+..+...|...++.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~--~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK--VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 378999999999999999999998999999999999999987655 999999999999999999999964 46789999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+|+..+.+.+.++++.|+.+||.||++.++|...++.+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 62
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.47 E-value=9.3e-13 Score=154.81 Aligned_cols=150 Identities=23% Similarity=0.256 Sum_probs=124.6
Q ss_pred ChHHHHHHHHcCC-----CCCCCcccccccCC--C-------------C--CCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006649 1 MAALQRIVQSSGG-----SGYGSSRAADVAVP--D-------------Q--FPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (637)
Q Consensus 1 la~~~~~v~~mgG-----s~~~~~~~~~~~~~--~-------------~--fp~girVLIVDDD~~~re~Lk~lL~~~gy 58 (637)
|+|++++|+.||| +..+.++.+.+.+| . . .+.+.+||||||++..+..+...|...+|
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 5899999999999 33333333333322 1 0 11356899999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 59 ~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
.+..+.++.++++.+......||+||+ .||+++|+++++.|+. .+.+|||++++..+.....+++..| ++||.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999999765444899999 7999999999999974 4789999999999999999999999 99999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 006649 138 REEELKNIWQHVVRKR 153 (637)
Q Consensus 138 s~eEL~~~Lq~Vlrk~ 153 (637)
+.++|..+++++++..
T Consensus 800 ~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 800 SSRTLAYALRTALATA 815 (828)
T ss_pred CHHHHHHHHHHHHccc
Confidence 9999999999887643
No 63
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.47 E-value=1.4e-12 Score=123.77 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=121.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~-~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPV 109 (637)
.++||||||++..+..+...|.. .++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLD--PDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 47899999999999999999975 467664 6889999999887655 9999999999999999999999754 57899
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc-----cccC-CccccccCCCChhhHHHHh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----ENSG-SLEETDHHKRGSDEIEYAS 183 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~-----~~~~-~le~~~~~kl~~~Eie~ls 183 (637)
|+++...+......+++.|+.+|+.||++.++|...++.++++........ .... .........++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 999999998899999999999999999999999999988765422110000 0000 0011112346788888888
Q ss_pred hhccCCcchh
Q 006649 184 SVNEGTEGTF 193 (637)
Q Consensus 184 sv~eg~~~~v 193 (637)
.+.++.....
T Consensus 164 ~~~~g~s~~~ 173 (215)
T PRK10403 164 ELAQGLSNKQ 173 (215)
T ss_pred HHHCCCCHHH
Confidence 7777644433
No 64
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.47 E-value=2.6e-12 Score=122.32 Aligned_cols=163 Identities=18% Similarity=0.301 Sum_probs=125.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
..+||||||++..+..++.+|... ++.+ ..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+..|+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~v 83 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGRI 83 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999764 4554 46899999999887655 999999999999999999999974 467899
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc--------cccCCccccccCCCChhhHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH--------ENSGSLEETDHHKRGSDEIEY 181 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~--------~~~~~le~~~~~kl~~~Eie~ 181 (637)
|+++...+.+....+++.|+.+|+.||++.++|...++.++++........ .............++.+|.++
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~v 163 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERDI 163 (216)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHHH
Confidence 999999999999999999999999999999999999998876532111100 000000011112478888999
Q ss_pred HhhhccCCcchhhhhh
Q 006649 182 ASSVNEGTEGTFKAQR 197 (637)
Q Consensus 182 lssv~eg~~~~vk~~~ 197 (637)
+..+.+|......+..
T Consensus 164 l~~l~~g~~~~~ia~~ 179 (216)
T PRK10651 164 LKLIAQGLPNKMIARR 179 (216)
T ss_pred HHHHHcCCCHHHHHHH
Confidence 8888877655554443
No 65
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.46 E-value=9.6e-13 Score=139.28 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=90.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~-~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
++||||||++..+..++.+|. ..++.+. .+.++.++++.+.... ||+|++|+.||+|+|++++++++....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999995 5577765 7899999999998765 99999999999999999999997666799999
Q ss_pred EeccCC--HHHHHHHHHcCCCeEEeCCC
Q 006649 112 MSADGR--VSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 112 LSa~~d--~e~a~kAl~~GA~DYLlKPi 137 (637)
+++..+ .+...++++.|+.+|+.||+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 998754 56777899999999999999
No 66
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.46 E-value=9.1e-13 Score=143.69 Aligned_cols=113 Identities=25% Similarity=0.403 Sum_probs=103.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHhc-cCCCcE
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPd-----mDGlELLe~Ir~-~~~IPV 109 (637)
||||||++..+..+...+ .+|.|..+.++.+|++.+.... ||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 6899999999999999998765 999999999996 899999999964 478999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|+..+.+.+.++++.||+|||.||++.++|..++++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999887653
No 67
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.42 E-value=2.2e-12 Score=141.16 Aligned_cols=115 Identities=35% Similarity=0.527 Sum_probs=106.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILSa 114 (637)
||||||++..+..+...|...++.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ--PDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999988999999999999999987654 999999999999999999999964 46789999999
Q ss_pred cCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 115 ~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+.+...+.++++.|+.+|+.||++.++|...+++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654
No 68
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.42 E-value=1.2e-11 Score=105.40 Aligned_cols=118 Identities=33% Similarity=0.570 Sum_probs=105.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
.++|+++|+++.....++..|...++ .+..+.++.+++..+.... +|++++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--FGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccC--CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 47999999999999999999998787 4778899999999887654 9999999999999999999999743 4689
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+|+++...+.....++++.|+.+|+.||++.++|...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999887754
No 69
>PRK13435 response regulator; Provisional
Probab=99.42 E-value=5e-12 Score=115.99 Aligned_cols=118 Identities=21% Similarity=0.299 Sum_probs=101.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MP-dmDGlELLe~Ir~~~~IPV 109 (637)
..++|||+|+++..+..+...|...++.+. .+.++.++++.+.... ||+||+|+.|+ +.+|+++++.++....+|+
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~dliivd~~~~~~~~~~~~~~~l~~~~~~pi 81 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQ--PDVALVDVHLADGPTGVEVARRLSADGGVEV 81 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcC--CCEEEEeeecCCCCcHHHHHHHHHhCCCCCE
Confidence 357999999999999999999998888876 7899999999887654 99999999998 5899999999976678999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|+++...+. ..++..|+.+|+.||++.++|...++++..++.
T Consensus 82 i~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 82 VFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 999876542 467889999999999999999999998876543
No 70
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.41 E-value=6.3e-12 Score=134.24 Aligned_cols=118 Identities=35% Similarity=0.524 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPVI 110 (637)
.+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 48999999999999999999888999999999999999998765 9999999999999999999999753 368999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|+..+.....++++.||.+|+.||++.++|..+++.+++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988876543
No 71
>PRK13557 histidine kinase; Provisional
Probab=99.39 E-value=5.9e-12 Score=137.37 Aligned_cols=151 Identities=23% Similarity=0.314 Sum_probs=124.0
Q ss_pred ChHHHHHHHHcCC-----CCCCCcccccccCCC----------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe
Q 006649 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPD----------------QFPAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (637)
Q Consensus 1 la~~~~~v~~mgG-----s~~~~~~~~~~~~~~----------------~fp~girVLIVDDD~~~re~Lk~lL~~~gy~ 59 (637)
|++++++++.+|| +..+.++.+.+.+|. .-+.+.+||||||++..+..+..+|...+|.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 5799999999999 233333333333321 0123568999999999999999999988999
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 60 V~~asng~EALelLre~~~~pDLVIlDI~MPd-mDGlELLe~Ir~-~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
+..+.++.++++.+... ..||+||+|..||+ ++|+++++.++. .+.+|+|+++...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999988643 24999999999997 999999999974 4678999999999988888999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006649 138 REEELKNIWQHVVRK 152 (637)
Q Consensus 138 s~eEL~~~Lq~Vlrk 152 (637)
+.++|...++.++..
T Consensus 521 ~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 521 RRAELARRVRMVLDG 535 (540)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999998876543
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.38 E-value=8.3e-12 Score=132.88 Aligned_cols=104 Identities=33% Similarity=0.454 Sum_probs=91.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.++||||||++..+..+..+|... ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 77776 8999999999988765 9999999999999999999999765559999
Q ss_pred EEeccC--CHHHHHHHHHcCCCeEEeCCCC
Q 006649 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (637)
Q Consensus 111 ILSa~~--d~e~a~kAl~~GA~DYLlKPis 138 (637)
++|+.. +.+...++++.|+++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999754 3466779999999999999994
No 73
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.36 E-value=5.4e-12 Score=144.03 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=104.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
.++||||||++..+..+..+|...+|.|..+.++.+++..+.... |||||+|+.||+++|++++++++. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999888899999999999999887655 999999999999999999999974 47899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHH--HHHHHHHHHHHH
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREE--ELKNIWQHVVRK 152 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~e--EL~~~Lq~Vlrk 152 (637)
+|+..+.+.+.+++..|+.+|+.||.... ++...++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997543 555666555543
No 74
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.36 E-value=4.6e-12 Score=135.35 Aligned_cols=104 Identities=35% Similarity=0.471 Sum_probs=94.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.+|||||||.+..|..|+++|...+ ..|.++.|+.+|++.+.+.. ||+|.+|+.||.|||++++++|-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 3799999999999999999999886 56779999999999999877 9999999999999999999999766899999
Q ss_pred EEeccCC--HHHHHHHHHcCCCeEEeCCCC
Q 006649 111 MMSADGR--VSAVMRGIRHGACDYLIKPIR 138 (637)
Q Consensus 111 ILSa~~d--~e~a~kAl~~GA~DYLlKPis 138 (637)
|+|+... .+...+|+++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9987544 567889999999999999974
No 75
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.32 E-value=3.1e-12 Score=134.64 Aligned_cols=64 Identities=56% Similarity=0.858 Sum_probs=61.2
Q ss_pred CCCCccchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhC
Q 006649 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNG 285 (637)
Q Consensus 217 ~sKKpRvvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G 285 (637)
..||+|++|+.+||++|+++|++||.+||.||+||++|+++|||+++|+||| ||||.++|++..
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHL-----QKYRl~rk~l~~ 295 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHL-----QKYRSHRRHLAA 295 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHH-----HHHHHhcccccc
Confidence 6789999999999999999999999999999999999999999999999999 999999998743
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.28 E-value=7.4e-11 Score=118.27 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=99.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPd-mDGlELLe~Ir~~~~IPVI 110 (637)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+.... ||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~--~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTR--PGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccC--CCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35799999999999999999998888877 7889999999987654 999999999995 8999999999754489999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
++|+..+.... +...++.+|+.||++.++|...++++...
T Consensus 215 ~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 99997765443 34567889999999999999999887644
No 77
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.22 E-value=8.9e-11 Score=115.83 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=102.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
..++||++||++..+..+...|...||.+ ..+.++.++.+.+.... ||+||+|+.||..|-.+-+.........|||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIV 81 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEE
Confidence 34799999999999999999999988865 57778888888888766 9999999999999944444444455778999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
++|++++.+.+.++++.|+..||+||+++..|+.++.-+..+
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~sr 123 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSR 123 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999988877654
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.20 E-value=3.5e-10 Score=91.47 Aligned_cols=111 Identities=36% Similarity=0.583 Sum_probs=98.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecc
Q 006649 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSAD 115 (637)
Q Consensus 37 LIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILSa~ 115 (637)
+++|+++..+..+...+...++.+..+.+..+++..+.... +|++|+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK--PDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCC--CCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 47899999999999999888899989999999999887654 999999999999999999999965 467899999988
Q ss_pred CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 116 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 116 ~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
.+.....+++..|+.+|+.||++.++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8888888999999999999999999998887653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.12 E-value=4.4e-10 Score=117.99 Aligned_cols=89 Identities=25% Similarity=0.473 Sum_probs=79.9
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCC-CH
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI-RE 139 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi-s~ 139 (637)
.+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.+|||++|+..+.+.+.++++.||+|||.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~~--pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGFT--PDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 4788999999987655 9999999999999999999999754 679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHH
Q 006649 140 EELKNIWQHVVRK 152 (637)
Q Consensus 140 eEL~~~Lq~Vlrk 152 (637)
++|...++++++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988887654
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=3.7e-10 Score=115.74 Aligned_cols=116 Identities=28% Similarity=0.438 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
+++|++|||++..++.|..++... .. .+..+.++.++++.++... +|++++||.||+++|+++...++. .+..+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fldI~~~~~~G~ela~~i~~~~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLR--PDLVFLDIAMPDINGIELAARIRKGDPRPAI 78 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccC--CCeEEEeeccCccchHHHHHHhcccCCCCeE
Confidence 368999999999999999999832 22 2337889999999998765 999999999999999999999986 456678
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|++++. +..|++..|.|||.||++.++|...+....+.
T Consensus 79 vfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 79 VFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 899998765 77788999999999999999999999876543
No 81
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.93 E-value=5.1e-10 Score=114.21 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=58.7
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+||+.+|++|.+||+++||++|+ +||..+++++.|||.+|||.|..||++.|||++|+||.
T Consensus 207 ~Fk~~~G~S~~~yi~~~Rl~~A~-----~LL~~~~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 267 (278)
T PRK13503 207 QLKQQTGLTPQRYLNRLRLLKAR-----HLLRHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSPR 267 (278)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 88888999999999999999999999999999999995
No 82
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.93 E-value=5.6e-10 Score=115.52 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=58.9
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+||+++|++|.+||+++||++|+ +||..++++|.|||..|||.|..||.+.|||++|+||.
T Consensus 212 ~Fk~~~G~T~~qyi~~~Ri~~A~-----~LL~~t~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 272 (290)
T PRK13501 212 LFRQQTGMSISHYLRQIRLCHAK-----CLLRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPR 272 (290)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999996 88888999999999999999999999999999999995
No 83
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.91 E-value=6.9e-10 Score=113.97 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=58.6
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+||+++|++|.+||+++||++|+ +||..+++++.|||..|||.|..||++.|||.+|+||.
T Consensus 212 ~fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~d~s~F~r~FKk~~G~tP~ 272 (282)
T PRK13502 212 QFRAQTGMTINQYLRQVRICHAQ-----YLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPS 272 (282)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999996 77888999999999999999999999999999999995
No 84
>PRK15029 arginine decarboxylase; Provisional
Probab=98.89 E-value=1.3e-08 Score=118.92 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=90.0
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH----HHHHHH
Q 006649 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF----KLLEHI 101 (637)
Q Consensus 34 irVLIVDDD~~--------~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGl----ELLe~I 101 (637)
|||||||||.. .++.|+..|+..+|+|..+.++.+|++.++.. ..||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999763 139999999999999998 899999
Q ss_pred hc-cCCCcEEEEeccCC--HHHHHHHHHcCCCeEEeCCCCHHHH-HHHHHHH
Q 006649 102 GL-EMDLPVIMMSADGR--VSAVMRGIRHGACDYLIKPIREEEL-KNIWQHV 149 (637)
Q Consensus 102 r~-~~~IPVIILSa~~d--~e~a~kAl~~GA~DYLlKPis~eEL-~~~Lq~V 149 (637)
|. ..++|||++|+..+ .......+ --+.+|+.+--+..++ ...+...
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 130 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTADFIAGRAVAA 130 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHHHHHHHHHHH
Confidence 85 46899999999986 33333322 3356788887665554 3334443
No 85
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=98.89 E-value=1.2e-09 Score=97.58 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=58.1
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|++.+|++|.+|++++||++|+ ++|..+++++.+||..+||.|..+|++.|||++|+||.
T Consensus 41 ~f~~~~g~s~~~~i~~~Rl~~a~-----~~L~~~~~~i~~iA~~~Gf~~~s~f~~~Fk~~~G~tP~ 101 (107)
T PRK10219 41 MFRTVTHQTLGDYIRQRRLLLAA-----VELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPS 101 (107)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHccCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77888899999999999999999999999999999985
No 86
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.88 E-value=3.1e-09 Score=86.27 Aligned_cols=54 Identities=69% Similarity=1.065 Sum_probs=50.2
Q ss_pred CccchhhHHHhHHHHHHHHHhcc-cccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHH
Q 006649 220 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQEINLQKFRL 278 (637)
Q Consensus 220 KpRvvwk~Elg~tFveyLnqLRI-eKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk 278 (637)
|+|+.|+.|+|..|+++|..+|. +.|.||+|+++|..+++|+.+|++|+ |+|+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~-----QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL-----QKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH-----HHHHc
Confidence 57889999999999999999998 99999999999999999999999999 66653
No 87
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.86 E-value=1.4e-09 Score=114.42 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=58.7
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.||+.+|++|.+||+++||++|+ +||..+++++.|||..|||.|.+||+++|||.+|+||.
T Consensus 242 ~FK~~tG~T~~~yi~~~RL~~A~-----~LL~~t~~sI~eIA~~~GF~d~s~Fsr~FKk~~G~TP~ 302 (312)
T PRK13500 242 QFRQQTGMTINQYLRQVRVCHAQ-----YLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPS 302 (312)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999996 77888999999999999999999999999999999995
No 88
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=98.85 E-value=1.5e-09 Score=112.02 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=58.4
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+||+.+|.+|.+|++++||++|+ .||..+++++.+||..|||.|+.||.|.|||.+|+||.
T Consensus 219 ~Fk~~~G~tp~~~l~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~d~s~Fsr~FKk~~G~SP~ 279 (290)
T PRK10572 219 LFRQQLGISVLRWREDQRISRAK-----LLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGASPS 279 (290)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77778999999999999999999999999999999995
No 89
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.84 E-value=1.6e-09 Score=111.21 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=58.1
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+||+.+|++|.+||+++||++|+ +||..+++++.|||..|||.|..||.++|||++|+||.
T Consensus 222 ~Fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~s~s~Fsr~FKk~~G~tP~ 282 (287)
T TIGR02297 222 ICRRFSALSPKRLIIERVMQEAR-----RLLLFTQHSINQIAYDLGYKDPAYFARFFQKETGLSPS 282 (287)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 66778999999999999999999999999999999985
No 90
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.77 E-value=4.3e-09 Score=108.05 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=58.4
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+||+.+|.+|.+||+++||++|+ +||..+++++.+||..+||.|..||.+.|||++|+||.
T Consensus 208 ~fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 268 (278)
T PRK10296 208 ATRRYYGKTPMQIINEIRINFAK-----KQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPG 268 (278)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77788999999999999999999999999999999985
No 91
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=98.75 E-value=4e-09 Score=89.20 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=51.9
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHh-cCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELM-NVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL-~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+|+.++|.+|.+|++.+|+++|. ++| ..+++++.|||..+||.|.++|.+.||+++|+||.
T Consensus 15 ~f~~~~g~s~~~~~~~~R~~~a~-----~~L~~~~~~~i~~ia~~~Gf~~~~~f~~~fk~~~g~tP~ 76 (81)
T PF12833_consen 15 IFKKETGMSFKQYLRELRLQRAK-----ELLRQNTDLSIAEIAEECGFSSQSHFSRAFKRYFGMTPS 76 (81)
T ss_dssp HHHHHHSS-HHHHHHHHHHHHHH-----HHHHHHTT--HHHHHHHTT-SSHHHHHHHHHHHHSS-HH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHHhhcccHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 666 45999999999999999999999999999999974
No 92
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=98.75 E-value=6.4e-09 Score=96.43 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=57.6
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.++|++|.+|++.+|+++|+ ++|..+++++.+||..+||.|+.+|++.||+.+|+||.
T Consensus 45 ~Fk~~~G~s~~~~l~~~Rl~~A~-----~~L~~t~~~i~eIA~~~Gf~s~s~F~r~Fkk~~G~tP~ 105 (127)
T PRK11511 45 MFKKETGHSLGQYIRSRKMTEIA-----QKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPH 105 (127)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999985 66677899999999999999999999999999999995
No 93
>COG2207 AraC AraC-type DNA-binding domain-containing proteins [Transcription]
Probab=98.62 E-value=2.7e-08 Score=88.46 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=58.4
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+..+|.+|.+|++++||++|+ .+|..++.++.+||..+||.|..||.+.||+.+|+||.
T Consensus 56 ~f~~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~~iA~~~Gf~~~s~F~~~Fk~~~g~tP~ 116 (127)
T COG2207 56 LFKKETGTSPSQYLRQLRLEEAR-----RLLRSTDLSITEIALRLGYSSPSHFSRAFKRLFGVTPS 116 (127)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCcCCHHHHHHHHHHHhCCChH
Confidence 69999999999999999999995 78888999999999999999999999999999999996
No 94
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.57 E-value=3.3e-08 Score=103.98 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=58.3
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+|++++|.+|.+||+++|+++|+ ++|..+++++.+||..+||.|..+|.+.|||++|+||.
T Consensus 227 ~Fk~~~G~t~~~~l~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 287 (302)
T PRK10371 227 IFQRVMQLTMKQYITAMRINHVR-----ALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQ 287 (302)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77788999999999999999999999999999999995
No 95
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=98.56 E-value=3.6e-08 Score=103.96 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=58.7
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 223 vvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..|++++|.+|.+|++++||++|+ ++|..+++++.+||..+||.|..+|++.|||++|+||.
T Consensus 253 r~fk~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 314 (322)
T PRK09393 253 RRFEAATGMTPAEWLLRERLARAR-----DLLESSALSIDQIAERAGFGSEESLRHHFRRRAATSPA 314 (322)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 77888999999999999999999999999999999985
No 96
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=98.53 E-value=3.7e-08 Score=102.96 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=56.3
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.+ |.+|.+||+++||++|+ +||..+++++.+||..+||.|..+|++.|||++|+||.
T Consensus 178 ~Fk~~-G~S~~~yl~~~Rl~~A~-----~LL~~t~~sI~eIA~~~GF~s~S~Fsr~FKk~~G~TPs 237 (274)
T PRK09978 178 KLREE-ETSYSQLLTECRMQRAL-----QLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 237 (274)
T ss_pred HHHhc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68776 99999999999999996 77788999999999999999999999999999999996
No 97
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=98.48 E-value=8.6e-08 Score=99.83 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=58.0
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+|+..+|.++.+|++++|+++|+ .+|..+++++.+||..+||.++++|++.|||.+|+||.
T Consensus 41 ~F~~~~g~s~~~yi~~~Rl~~A~-----~~L~~~~~~i~~iA~~~Gf~s~~~f~r~Fk~~~g~sP~ 101 (289)
T PRK15121 41 MFKDVTGHAIGAYIRARRLSKAA-----VALRLTSRPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 (289)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 67777999999999999999999999999999999995
No 98
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=98.48 E-value=6.9e-08 Score=100.05 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=54.0
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcC--CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNV--PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v--~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+|++ .|.+|.+||+++||++|+ ++|.. ++++|.|||..+||.|..||++.|||.+|+||.
T Consensus 234 ~Fk~-~G~T~~~yi~~~RL~~A~-----~lL~~~~~~~sI~eIA~~~GF~d~s~Fsr~Fkk~~G~sP~ 295 (302)
T PRK09685 234 LFAE-QGLVVAQYIRNRRLDRCA-----DDLRPAADDEKITSIAYKWGFSDSSHFSTAFKQRFGVSPG 295 (302)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHhhhhccCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 7886 599999999999999995 55632 578999999999999999999999999999985
No 99
>PRK09940 transcriptional regulator YdeO; Provisional
Probab=98.47 E-value=8.2e-08 Score=99.35 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=53.8
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.+ |.+|.+|++++||++|+ +||. ++.++.+||..+||.|..+|.+.|||++|+||.
T Consensus 170 ~FK~~-G~T~~eyl~~~Rl~~A~-----~LL~-~~~sI~eIA~~~GF~s~S~Fsr~FKr~~G~TPs 228 (253)
T PRK09940 170 KLKQE-QTTFSQILLDARMQHAK-----NLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 (253)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHc-cCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68887 99999999999999995 5565 467999999999999999999999999999995
No 100
>PRK15044 transcriptional regulator SirC; Provisional
Probab=98.45 E-value=7.7e-08 Score=101.15 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=56.4
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 223 vvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..|+.+ +.+|.+++.++||++|+ +||..+++++.+||.++||.|..||++.|||++|+||+
T Consensus 227 R~Fk~e-g~T~~~y~~~~RL~~A~-----~LL~~t~~sIseIA~~~GFss~S~FsRaFKk~fG~TPs 287 (295)
T PRK15044 227 RKLAAE-EVSFSKIYLDARMNQAI-----KLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL 287 (295)
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCChHHHHHHHHHHHCcCHH
Confidence 367775 89999999999999996 78888999999999999999999999999999999985
No 101
>PRK15185 transcriptional regulator HilD; Provisional
Probab=98.39 E-value=1.5e-07 Score=99.77 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=56.1
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+. .|.+|.+|++++||++|. ++|..+++++.+||.++||.|..||++.|||++|+||.
T Consensus 242 ~FK~-~G~S~~~yl~~~Ri~~A~-----~LL~~t~~sIseIA~~~GFss~S~FsR~FKk~~G~TPs 301 (309)
T PRK15185 242 KLAE-EGTSFSDIYLSARMNQAA-----KLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPS 301 (309)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 5765 799999999999999995 78888999999999999999999999999999999985
No 102
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=98.35 E-value=3.7e-07 Score=75.50 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=56.1
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+..+|.++.++++..|+++|. ++|...++++.+||..+||.+..+|.+.||+++|+||.
T Consensus 21 ~f~~~~~~s~~~~~~~~r~~~a~-----~~l~~~~~~~~~ia~~~g~~s~~~f~r~Fk~~~g~sp~ 81 (84)
T smart00342 21 LFKKETGTTPKQYLRDRRLERAR-----RLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81 (84)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCChHHHHHHHHHHHCcChh
Confidence 68889999999999999999984 66666689999999999999999999999999999985
No 103
>PRK15340 transcriptional regulator InvF; Provisional
Probab=98.33 E-value=3.2e-07 Score=92.91 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=56.2
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 223 vvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.+|++.+|.++.+|++++|+.+|. ..+..++.++.+||..+||.|+.+|++.||+++|+||.
T Consensus 144 RlFk~~~G~tpk~yl~~~Rl~~al-----l~L~~s~~sItdIA~~~GY~d~ShFsr~FKk~~G~TPs 205 (216)
T PRK15340 144 RLCSRALGGKAKSELRNWRMAQSL-----LNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPR 205 (216)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HhhhcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 479999999999999999998873 34445799999999999999999999999999999986
No 104
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=98.32 E-value=2.7e-07 Score=97.29 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=56.1
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.+ |.+|.+++.++||.+|+ ++|..+++++.+||..|||.+..||++.|||++|+||.
T Consensus 217 ~Fk~~-g~s~~~~~~~~Rl~~A~-----~lL~~~~~sI~~IA~~~GY~s~S~Fsr~FK~~~G~TP~ 276 (291)
T PRK15186 217 KLKQE-NTSFSEVYLNARMNKAT-----KLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPS 276 (291)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68876 99999999999999995 77788899999999999999999999999999999995
No 105
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=98.27 E-value=4.8e-07 Score=96.71 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=59.7
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 223 vvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..|+++||.++.+|+.++|+++|. +||..+.+++.+||..+||.++.+|+|.||+.+|.+|+
T Consensus 255 RlF~~~lG~sP~~yy~~lRL~~Ar-----~LL~~t~~si~~IA~~~GF~sa~~fsr~fr~~fg~~P~ 316 (328)
T COG4977 255 RLFRAELGVSPARYYLRLRLERAR-----RLLEQTRLSIAEIAVACGFSSASHFSRAFRRQFGLSPS 316 (328)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-----HHHHhCCCcHHHHHHHhCCCCHHHHHHHHHHHhCCChH
Confidence 479999999999999999999996 88999999999999999999999999999999999995
No 106
>PRK10130 transcriptional regulator EutR; Provisional
Probab=98.19 E-value=1.1e-06 Score=94.74 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=56.7
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcC---CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNV---PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 223 vvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v---~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
..|++.+|+++.+||+++||++|. ++|.. ++.++.+||.++||.+..+|++.|||.+|++|..
T Consensus 275 r~Fk~~~G~sp~~ylr~~RL~~ar-----~lL~~~~~~~~sI~eIA~~~GF~~~s~Fs~~fk~~fG~tPs~ 340 (350)
T PRK10130 275 NAFHAILGIGPNAWLKRIRLNAVR-----RELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSL 340 (350)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHhccCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCcHH
Confidence 379999999999999999999994 45543 6789999999999999999999999999999963
No 107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.14 E-value=2.1e-05 Score=92.75 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=113.3
Q ss_pred ChHHHHHHHHcCC-----C--CCCCcccccccCC-----------CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEE
Q 006649 1 MAALQRIVQSSGG-----S--GYGSSRAADVAVP-----------DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (637)
Q Consensus 1 la~~~~~v~~mgG-----s--~~~~~~~~~~~~~-----------~~fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~ 62 (637)
|+|++++++.||| | +.|+.+.+.+.+. .....+.+|+|+||++..+..+..+|..+++.+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 3 3444444443321 11235689999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hc--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCH
Q 006649 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (637)
Q Consensus 63 asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I-r~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~ 139 (637)
+.+..+ +... .||++|+|+.||++++.+.+... +. ....++|+++...+......+.+.|+.+|+.||++.
T Consensus 566 ~~~~~~----l~~~--~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPEA--HYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hccC--CCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 888877 3333 49999999999998877665544 32 234568888888888889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006649 140 EELKNIWQHVV 150 (637)
Q Consensus 140 eEL~~~Lq~Vl 150 (637)
.+|...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99988887654
No 108
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=98.13 E-value=1.7e-06 Score=93.62 Aligned_cols=60 Identities=5% Similarity=-0.042 Sum_probs=56.0
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+|++++|.+|.+|++++|+++|. ++|. +++++.+||..+||.|..+|++.|||++|+||.
T Consensus 119 ~Fkk~~G~TP~~yl~~~Rl~~A~-----~lL~-~~~sI~eIA~~~Gf~s~s~F~~~Fkk~~G~TPs 178 (353)
T PRK15435 119 LFKATTGMTPKAWQQAWRARRLR-----EALA-KGESVTTSILNAGFPDSSSYYRKADETLGMTAK 178 (353)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHh-CCCCHHHHHHHhCCCChHHHHHHHHHHHCcCch
Confidence 79999999999999999999994 5554 679999999999999999999999999999996
No 109
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.99 E-value=6.3e-06 Score=91.16 Aligned_cols=94 Identities=35% Similarity=0.511 Sum_probs=81.7
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 57 gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
.++|.++..+.+++..+.... ||++|+|+.||+|+|+++++.++..+.. ++++|+.++...-.++++.|+.++|+||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 356777999999999988766 9999999999999999999999876555 8999999998889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 006649 137 IREEELKNIWQHVVRKR 153 (637)
Q Consensus 137 is~eEL~~~Lq~Vlrk~ 153 (637)
+....+......+.+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99998887776665543
No 110
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.81 E-value=2.4e-05 Score=93.85 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=61.9
Q ss_pred ChHHHHHHHHcCC-----C--CCCCcccccccCC----------CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 006649 1 MAALQRIVQSSGG-----S--GYGSSRAADVAVP----------DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (637)
Q Consensus 1 la~~~~~v~~mgG-----s--~~~~~~~~~~~~~----------~~fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~a 63 (637)
|+||++||+.||| | +.|+.+...+... +....+.+||||||++..++.+..+|+.+|+.|..+
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 5899999999999 3 4555554443321 122357899999999999999999999999999988
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCC
Q 006649 64 SQAAVALDILRERKGCFDVVLSDVHM 89 (637)
Q Consensus 64 sng~EALelLre~~~~pDLVIlDI~M 89 (637)
.++. .. ..|||||+|+.+
T Consensus 720 ~~~~------~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 720 DERL------IS--QEYDIFLTDNPS 737 (894)
T ss_pred Cccc------cC--CCCCEEEECCCC
Confidence 7531 22 349999999984
No 111
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=97.56 E-value=5.7e-05 Score=56.96 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.3
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.++++.+||+++|| +..||++.||+++|+||+
T Consensus 7 ~~~~l~~iA~~~g~-S~~~f~r~Fk~~~g~tp~ 38 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF-SPSYFSRLFKKETGMTPK 38 (42)
T ss_dssp SS--HHHHHHHHTS--HHHHHHHHHHHTSS-HH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHH
Confidence 56999999999999 999999999999999974
No 112
>COG2169 Ada Adenosine deaminase [Nucleotide transport and metabolism]
Probab=97.55 E-value=4.9e-05 Score=75.42 Aligned_cols=62 Identities=5% Similarity=0.015 Sum_probs=58.3
Q ss_pred cchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 222 Rvvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+.+||+++|++|.+|....||..|. ++|..++ +|.+++..+||.+..+|+..|++++|++|.
T Consensus 115 ~R~FK~~~G~Tp~~ya~a~R~~~a~-----~~L~~g~-sv~~a~~daGf~s~s~F~~af~~~~G~~P~ 176 (187)
T COG2169 115 HRLFKAITGMTPKEYARARRMGRAR-----KQLRMGA-SVTDAQIDAGFESSSRFYDAFSKILGMTPT 176 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-----HHHhCCC-chhHHHHHhCCCChHHHHHHHHHHcCCChH
Confidence 4589999999999999999999995 7788888 999999999999999999999999999996
No 113
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.42 E-value=0.0012 Score=46.24 Aligned_cols=55 Identities=40% Similarity=0.643 Sum_probs=48.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MP 90 (637)
++|+++||++..+..+...+...++.+..+.+..+++..+.... +|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEK--PDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCC
Confidence 47999999999999999999988899889999999998887654 99999998764
No 114
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.31 E-value=0.0017 Score=59.10 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=74.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-CCCCCCCHHHHHHHH-hccCCCcEEEE
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-VHMPDMDGFKLLEHI-GLEMDLPVIMM 112 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlD-I~MPdmDGlELLe~I-r~~~~IPVIIL 112 (637)
||||||||...+..|+.+|+-.|+.+..++..+- ........ .+.+++- ...+ ...++++.+ +..+.+||+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999999998877765433 23333322 4544443 3333 445666766 45689999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
......... ..+.+-|..|++..+|..+++++
T Consensus 76 g~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 876655111 12667799999999999999875
No 115
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.34 E-value=0.49 Score=43.59 Aligned_cols=105 Identities=10% Similarity=-0.035 Sum_probs=74.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhcc-CCCcEEEEe
Q 006649 40 DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE-MDLPVIMMS 113 (637)
Q Consensus 40 DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPdm--DGlELLe~Ir~~-~~IPVIILS 113 (637)
|.|..=...+..+|+..||+|.... ..++.++.+.+.. ||+|.+-..++.. .--++++.+++. +.-..|++.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 6666777778888888899987543 4678888888776 9999998877542 123455666544 433446666
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~L 146 (637)
+..-.+...++.++|.+.|+-.-.+.++...-+
T Consensus 88 G~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 555556677788999999999888887766544
No 116
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.24 E-value=0.61 Score=44.29 Aligned_cols=115 Identities=15% Similarity=0.042 Sum_probs=83.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006649 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (637)
Q Consensus 33 girVLIV----DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPdm--DGlELLe~Ir~ 103 (637)
+.+||+. |.|..=...+..+|+..||+|+... ..++.++.+.+.. ||+|.+-..|... .-.++++++++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4578887 8888888889999999999997544 5678888888766 9999999887753 23456666754
Q ss_pred c-C-CCcEEEEeccC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 104 E-M-DLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 104 ~-~-~IPVIILSa~~------d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
. . +++| ++.+.. ..+...++.++|++......-+.+++..-+++.+
T Consensus 81 ~~~~~~~i-~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILL-YVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeE-EEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3 5544 444332 3445567889998888888888888887776654
No 117
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.60 E-value=0.39 Score=43.50 Aligned_cols=93 Identities=11% Similarity=-0.011 Sum_probs=64.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhccCC-CcEEEEe
Q 006649 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEMD-LPVIMMS 113 (637)
Q Consensus 40 DDD~~~re~Lk~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIlDI~MPdm--DGlELLe~Ir~~~~-IPVIILS 113 (637)
|.+..=...+..+|+..||+|... ...++.++.+.+.+ ||+|.+-..+... +..++++.+++... -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 666777788899999999998643 34567788888766 9999998876542 34567777765432 3345566
Q ss_pred ccCCHHHHHHHHHcCCCeEEe
Q 006649 114 ADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLl 134 (637)
+..-......+.+.|++.|+.
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCCChhHHHHHHcCCeEEEC
Confidence 655444445778899866665
No 118
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=94.35 E-value=0.38 Score=44.09 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=75.5
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHh-ccCCCcEEEEeccCCHHHHH
Q 006649 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVIMMSADGRVSAVM 122 (637)
Q Consensus 46 re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir-~~~~IPVIILSa~~d~e~a~ 122 (637)
...|...|...+++|..+.+.++++..++... .++.|++|+. ++ ....++++.++ ....+||.+++.+...+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 45677778878999999999999999998764 5899999986 21 13456788886 45899999998866554444
Q ss_pred HHHHcCCCeEEeCCCC-HHHHHHHHHHHHH
Q 006649 123 RGIRHGACDYLIKPIR-EEELKNIWQHVVR 151 (637)
Q Consensus 123 kAl~~GA~DYLlKPis-~eEL~~~Lq~Vlr 151 (637)
..+-..+.+|+...-+ .+.+...+..+.+
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 5555677889888764 4555566665544
No 119
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.96 E-value=2.3 Score=40.24 Aligned_cols=116 Identities=10% Similarity=-0.010 Sum_probs=77.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHH-HHHHHHhcc
Q 006649 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDGF-KLLEHIGLE 104 (637)
Q Consensus 34 irVLIV----DDD~~~re~Lk~lL~~~gy~V~~---asng~EALelLre~~~~pDLVIlDI~MPd-mDGl-ELLe~Ir~~ 104 (637)
.||++. |-|..-...+..+|+..||+|.. ..+.++.++...+.. +|+|.+-..+.. +..+ ++++.|++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455554 45556666778888888999874 446788888888765 999988776643 2222 344555543
Q ss_pred -CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 105 -MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 105 -~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.....|++-+..-.+...+..++|+++|+..=-+..++...+.+.+.
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 22223445543344456678899999999988888888877776543
No 120
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.53 E-value=2.9 Score=43.84 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=76.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH------hCCCeEE-EE-CCHHHHHHHHHHcCCCceEEEEeCCCC---------CCCH
Q 006649 32 AGLRVLVVDDDITCLRILEQMLR------RCLYNVT-TC-SQAAVALDILRERKGCFDVVLSDVHMP---------DMDG 94 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~------~~gy~V~-~a-sng~EALelLre~~~~pDLVIlDI~MP---------dmDG 94 (637)
..+|+=|+.|+.....-+.+.++ +.|+.|. .| .+...|-.+ .+.. +|+| || +..-
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l-~~~G--~~~v-----mPlg~pIGsg~Gi~~ 163 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRL-EDAG--CAAV-----MPLGSPIGSGQGLLN 163 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH-HHcC--CCEe-----CCCCcCCCCCCCCCC
Confidence 45788888776644433333332 3378776 44 455555444 4433 7887 66 2212
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL-----lKPis~eEL~~~Lq~Vlrk 152 (637)
.++++.|++..++|||+=.+-...+.+.+|+++||+..+ .|.-++..+.+.+..++..
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 688888876678999988889999999999999999986 4555677777766666543
No 121
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.39 E-value=5.5 Score=35.63 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCC-CCC-CHHHHHHHHhcc-CCCcEEEEec
Q 006649 41 DDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGLE-MDLPVIMMSA 114 (637)
Q Consensus 41 DD~~~re~Lk~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIlDI~M-Pdm-DGlELLe~Ir~~-~~IPVIILSa 114 (637)
-++.-...+..+|++.|++|... .+.++..+.+++.+ ||+|.+...+ +.. ...++++.+++. ++++|| +-+
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv-~GG 88 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV-VGG 88 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE-EEE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE-EEC
Confidence 45677889999999999999765 23467777777766 9999998844 433 345666676654 455544 444
Q ss_pred cCCHHHHHHHHH--cCCCeEEe
Q 006649 115 DGRVSAVMRGIR--HGACDYLI 134 (637)
Q Consensus 115 ~~d~e~a~kAl~--~GA~DYLl 134 (637)
..-.....+.++ .|++..+.
T Consensus 89 ~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 89 PHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SSSGHHHHHHHHHHHTSEEEEE
T ss_pred CchhcChHHHhccCcCcceecC
Confidence 433333344444 45554443
No 122
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=90.24 E-value=2.9 Score=49.93 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=72.4
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006649 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (637)
Q Consensus 34 irVLIVDDD~-~-----~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~ 106 (637)
|+|+|||++- . -.+.|..-|+..+++|..+.+..+++..++.. ...+.|++|+.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788998774 2 24556667777899999999999999998854 4688999995332 355788886 4578
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCC-HHHHHHHHHHHH
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIR-EEELKNIWQHVV 150 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis-~eEL~~~Lq~Vl 150 (637)
+||+++........+--..-.-+.+|+..--+ .+.+...+..+.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~ 121 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYT 121 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHH
Confidence 99999876543332222222334555554433 344434344443
No 123
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.67 E-value=1.2 Score=47.30 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=53.0
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec-cCCHHHHHHHHHcCCCeEEeCC
Q 006649 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 58 y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa-~~d~e~a~kAl~~GA~DYLlKP 136 (637)
.+++.+.+..++-... ..-.+|++|-.+-. ...+.. .-....+|++.. ..+.+....|++.||.|||.+|
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P 72 (322)
T TIGR03815 2 VELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLP 72 (322)
T ss_pred CceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCC
Confidence 3455555544442222 23578999875411 111111 112233665544 6678899999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 006649 137 IREEELKNIWQHV 149 (637)
Q Consensus 137 is~eEL~~~Lq~V 149 (637)
++.++|...+.++
T Consensus 73 ~~~~~l~~~l~~~ 85 (322)
T TIGR03815 73 EAEGWLVELLADL 85 (322)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999888775
No 124
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.59 E-value=3.3 Score=43.48 Aligned_cols=113 Identities=22% Similarity=0.222 Sum_probs=75.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH------hCCCeEE-EE-CCHHHHHHHHHHcCCCceEEEEeCCCC---------CCCH
Q 006649 32 AGLRVLVVDDDITCLRILEQMLR------RCLYNVT-TC-SQAAVALDILRERKGCFDVVLSDVHMP---------DMDG 94 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~------~~gy~V~-~a-sng~EALelLre~~~~pDLVIlDI~MP---------dmDG 94 (637)
..+|+=|+.|+.....-+...++ +.|+.|. .| .+..+|-.+ .+.. +|+| || +..-
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l-~~~G--~~~v-----mPlg~pIGsg~gi~~ 163 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRL-EEAG--CAAV-----MPLGAPIGSGLGLLN 163 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH-HHcC--CCEe-----CCCCcCCCCCCCCCC
Confidence 45788888776533333333322 3488776 44 455555544 4333 7887 66 1211
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL-----lKPis~eEL~~~Lq~Vlrk 152 (637)
.++++.|++..++|||+=.+-...+.+.+++++||+..+ .|.-++..+.+.+..++..
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 677888876678999998889999999999999999986 4555677777777666543
No 125
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=89.17 E-value=3.1 Score=49.65 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=70.6
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006649 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (637)
Q Consensus 34 irVLIVDDD~-~-----~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~ 106 (637)
|+|+||+++. . -.+.|..-|++.+++|..+.+..+++..++.. ...+.|++|+.- . ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788887772 1 24556667778899999999999999988854 468899999532 1 245778876 4578
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHH
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVV 150 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi-s~eEL~~~Lq~Vl 150 (637)
+||+++........+-...-.-+.+|+..-- +.+.+...+..+.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~ 121 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTT 121 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHH
Confidence 9999987644332222222222444554332 3444434344433
No 126
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=88.70 E-value=0.19 Score=56.82 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=48.4
Q ss_pred HHHHHH-HHHhcccccchHHHHHHhcCCC------CCHH-HHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 231 QQFVSA-VNQLGIDKAVPKRILELMNVPG------LTRE-NVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 231 ~tFvey-LnqLRIeKA~PKkILeLL~v~g------Lti~-EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..|.+| +.+.|+++|. .||..+. +.++ +||+.+||.+..||...||++.|++|.
T Consensus 208 ~~~~ey~l~~~r~~~a~-----~ll~~s~~v~~~~~k~y~~iaekl~~~~~~~~~~~~k~~~~~~p~ 269 (475)
T COG4753 208 APFQEYGLLRKRLEQAK-----LLLVTSEQVSIYVLKVYREIAEKLGFEEADYFDYRFKKYLGMTPD 269 (475)
T ss_pred chHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHhcccccchhhHhhcccccCChH
Confidence 899999 9999999994 5566666 6777 999999999999999999999999985
No 127
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=88.64 E-value=0.38 Score=52.51 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 256 v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
.+.++++++|.++|++ ..||.+.||+++|+|++.
T Consensus 97 ~~~lsl~eLA~~lG~S-~~~L~R~Fkk~~G~TP~~ 130 (353)
T PRK15435 97 ETPVTLEALADQVAMS-PFHLHRLFKATTGMTPKA 130 (353)
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHCcCHHH
Confidence 4789999999999996 999999999999999973
No 128
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=87.81 E-value=12 Score=35.63 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc-CCCcEEEEec
Q 006649 41 DDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE-MDLPVIMMSA 114 (637)
Q Consensus 41 DD~~~re~Lk~lL~~~gy~V~~---asng~EALelLre~~~~pDLVIlDI~MPd-mDG-lELLe~Ir~~-~~IPVIILSa 114 (637)
-|..=...+..+|+..||+|.. ....++.++.++++. +|+|-+-..|.. +.. -++.+.+++. ..-++|++-+
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 3344556788889999999874 557788888888776 999998887753 222 2355556543 2224455655
Q ss_pred c-----CCHH-HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 115 D-----GRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 115 ~-----~d~e-~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
. .|.. ...++.++|++..+...-..+++...+++.+
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 2 2332 2456788998888887778888888777654
No 129
>PRK15320 transcriptional activator SprB; Provisional
Probab=85.59 E-value=2.7 Score=42.95 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=94.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006649 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~--gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~IPVII 111 (637)
+|+|-.|.-...-.++.++++. +..|.+|.+-...+..++.. ||.+++=---|..- +-+...++ ..++-||++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh-~~lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEH-VYLFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhH-HHHHHHHHHHcCCCceEE
Confidence 5777888887888888888875 56777888888888887754 67655533335432 22333343 346778888
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCC-----CH----HHHHHHHHHHHHHhhcccccccccCCccc--------------
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPI-----RE----EELKNIWQHVVRKRWNENKEHENSGSLEE-------------- 168 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPi-----s~----eEL~~~Lq~Vlrk~~~~~k~~~~~~~le~-------------- 168 (637)
++..--+....-.--.|+.+|++|-- ++ -.|-++|-+...+-.+..-.........+
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLKDELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQYAW 158 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHHHHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhccceee
Confidence 87654444333334568888887631 00 11223444433321111100000000000
Q ss_pred -cccCCCChhhHHHHhhhccCCcchhhhhhhccccc
Q 006649 169 -TDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAK 203 (637)
Q Consensus 169 -~~~~kl~~~Eie~lssv~eg~~~~vk~~~k~Is~k 203 (637)
.....++.+|++++..+.+|.....++....++.+
T Consensus 159 ~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~K 194 (251)
T PRK15320 159 WNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTK 194 (251)
T ss_pred ecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchh
Confidence 01235678899999999999887777666655443
No 130
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.63 E-value=30 Score=30.58 Aligned_cols=106 Identities=19% Similarity=0.315 Sum_probs=61.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~-~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
|||.||-=-..-+..+..++.. .++++. .++...+..+.+.+.. ... ++.| ++.+-...++-+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~-~~~~-----------~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIP-VYTD-----------LEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSE-EESS-----------HHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-ccc-chhH-----------HHHHHHhhcCCEEE
Confidence 4667776666666666666665 345543 4444443333333222 134 4444 12221112333444
Q ss_pred Eec--cCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHHH
Q 006649 112 MSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 152 (637)
Q Consensus 112 LSa--~~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vlrk 152 (637)
++. ..-.+.+.++++.|..=|+.||+ +.+++.++++.+-+.
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 433 34467889999999999999998 889998888766443
No 131
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=82.56 E-value=22 Score=35.78 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=55.6
Q ss_pred HHHHHh-CCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEeccCCHHH
Q 006649 50 EQMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSA 120 (637)
Q Consensus 50 k~lL~~-~gy~V-~~asng~EALelLre~~~~pDLVIlDI~-------MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~ 120 (637)
.+.++. .+..+ ..+.+.+++..+.. . .+|+|.+... ......++++++++...++|||...+-.+.+.
T Consensus 111 i~~~~~~~~i~vi~~v~t~ee~~~a~~-~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~ 187 (221)
T PRK01130 111 VKRIKEYPGQLLMADCSTLEEGLAAQK-L--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQ 187 (221)
T ss_pred HHHHHhCCCCeEEEeCCCHHHHHHHHH-c--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 333344 44443 45667777755443 3 3898865321 12223578888887666899999888889999
Q ss_pred HHHHHHcCCCeEEeC
Q 006649 121 VMRGIRHGACDYLIK 135 (637)
Q Consensus 121 a~kAl~~GA~DYLlK 135 (637)
+.++++.||+..+.=
T Consensus 188 ~~~~l~~GadgV~iG 202 (221)
T PRK01130 188 AKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHCCCCEEEEc
Confidence 999999999887653
No 132
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=81.92 E-value=18 Score=36.19 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=67.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006649 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (637)
Q Consensus 33 girVLIV----DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPdm--DGlELLe~Ir~ 103 (637)
+.||++. |.|..=...+..+|+..||+|.... ..++.++.+++.. ||+|-+-..|... +..++++.+++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578887 7777778889999999999987543 4678888888776 9999999877653 23456666765
Q ss_pred cC---CCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 104 EM---DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 104 ~~---~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
.. +++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 43 45555433333332 3456799888753
No 133
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.76 E-value=10 Score=33.44 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=52.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
+||||-........++..+++.|+..... .........+...-...|+||+=.+.-.=+-...+++..+..++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999888777 222222222333223479998866554434445555554567899887
Q ss_pred Eec
Q 006649 112 MSA 114 (637)
Q Consensus 112 LSa 114 (637)
.-.
T Consensus 81 ~~~ 83 (97)
T PF10087_consen 81 SRS 83 (97)
T ss_pred ECC
Confidence 653
No 134
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=81.58 E-value=20 Score=35.21 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--------CHHHHHHHHhccCC-CcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPdm--------DGlELLe~Ir~~~~-IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
.+.+..++.+..+. .+|.|.+.--.|.. .|++.++++++... +||++..+- +.+.+.+++..||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566676665543 38999886544432 36888888865444 898887766 5688889999999987
Q ss_pred Ee
Q 006649 133 LI 134 (637)
Q Consensus 133 Ll 134 (637)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 64
No 135
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=81.49 E-value=15 Score=37.42 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=69.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006649 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (637)
Q Consensus 32 ~girVLIV----DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPd-mD-GlELLe~Ir 102 (637)
..-+|++. |.|..=...+..+|+..||+|.... ..++.++.+.+.+ ||+|.+-..|+. +. --++++.|+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 34578887 7778888888999999999998654 4678888888776 999999988864 22 334566665
Q ss_pred cc-CCCcEEEEeccCCHHHHHH---HHHcCCCeEEeCC
Q 006649 103 LE-MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKP 136 (637)
Q Consensus 103 ~~-~~IPVIILSa~~d~e~a~k---Al~~GA~DYLlKP 136 (637)
+. .+++|++=-+--+.+.+.. +-..||+.|-.-.
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 43 4566555443334444332 2346998886543
No 136
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=80.58 E-value=20 Score=36.05 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=51.4
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~-------MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
..+.+.+++...... .+|+|.+... ......+++++.++...++|||...+-.+.+.+.+++..||+..+
T Consensus 128 v~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 128 ADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred EECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 356677777655442 3888765321 112235788888876668999998888899999999999998876
Q ss_pred eC
Q 006649 134 IK 135 (637)
Q Consensus 134 lK 135 (637)
.-
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 53
No 137
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=80.19 E-value=2 Score=38.18 Aligned_cols=33 Identities=9% Similarity=-0.000 Sum_probs=28.6
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
..+++++||.++|++- .+|.+.||+++|+|++.
T Consensus 20 ~~~~~~~lA~~~~~S~-~~l~r~f~~~~g~s~~~ 52 (107)
T PRK10219 20 QPLNIDVVAKKSGYSK-WYLQRMFRTVTHQTLGD 52 (107)
T ss_pred CCCCHHHHHHHHCCCH-HHHHHHHHHHHCcCHHH
Confidence 3589999999998765 59999999999999863
No 138
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=79.72 E-value=1.7 Score=40.32 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=28.7
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
..+++.+||+++|. +..+|.+.||+.+|+|++.
T Consensus 24 ~~~sl~~lA~~~g~-S~~~l~r~Fk~~~G~s~~~ 56 (127)
T PRK11511 24 SPLSLEKVSERSGY-SKWHLQRMFKKETGHSLGQ 56 (127)
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 45999999999985 5688999999999999863
No 139
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=77.02 E-value=12 Score=35.55 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=73.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH-----HHHhccC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-----EHIGLEM 105 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELL-----e~Ir~~~ 105 (637)
-.|-+.+.||-+.........+|...+.+|+.-... ..+-.. .||++|+.+-.+-.+-+.+. +.+.. -
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~lp~~--hYD~~Ll~vavtfr~n~tm~~~~l~~Al~m-t 81 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SALPPA--HYDMMLLGVAVTFRENLTMQHERLAKALSM-T 81 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEecccc----cccChh--hhceeeecccccccCCchHHHHHHHHHHhh-h
Confidence 467799999999999999999999988888643322 222222 39999999877654443332 22221 1
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006649 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (637)
Q Consensus 106 ~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~L 146 (637)
+ -||+--.....-.+.+....|+.++|+||++..+|.-.+
T Consensus 82 d-~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 82 D-FVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred c-ceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 2 233333334445677888999999999999998887633
No 140
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=76.60 E-value=52 Score=31.27 Aligned_cols=103 Identities=16% Similarity=0.059 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc--CCCcEEEEec
Q 006649 42 DITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE--MDLPVIMMSA 114 (637)
Q Consensus 42 D~~~re~Lk~lL~~~gy~V~~---asng~EALelLre~~~~pDLVIlDI~MPd-mDG-lELLe~Ir~~--~~IPVIILSa 114 (637)
|..=...+..+|+..||+|.. ....++.++.+.++. +|+|.+-..|.. +.. -++.+.+++. .+++| ++-+
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~v-ivGG 88 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILL-YVGG 88 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeE-EEEC
Confidence 344556788889999999874 557788888888766 999998887754 333 3455566543 25444 4443
Q ss_pred c-----CC-HHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006649 115 D-----GR-VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (637)
Q Consensus 115 ~-----~d-~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq 147 (637)
. .+ .+...++.++|++..+...-+++++...++
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 3 22 334566888999988887777777766553
No 141
>COG2169 Ada Adenosine deaminase [Nucleotide transport and metabolism]
Probab=76.49 E-value=2.6 Score=42.44 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=29.8
Q ss_pred CCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 256 v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
.+..+.+++|..||+ ++.|+++.||+.+|+||+.
T Consensus 95 ~~~~~le~la~~lg~-sp~~~~R~FK~~~G~Tp~~ 128 (187)
T COG2169 95 PEKRWLEELADELGV-SPSTLHRLFKAITGMTPKE 128 (187)
T ss_pred CCcccHHHHHHHhCC-ChHHHHHHHHHHhCCCHHH
Confidence 577789999999986 5689999999999999973
No 142
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=76.38 E-value=26 Score=35.12 Aligned_cols=94 Identities=9% Similarity=0.149 Sum_probs=65.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 35 RVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
++.|+.+++..++.++++++.+| |+|....+.+++++.++..-..|.|+..+....+ .++-++..-.. +-|++++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LIv 109 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLIV 109 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEEE
Confidence 68999999999999999999875 7899999999999988743345899999998876 44444332112 4566555
Q ss_pred ec-cCCHHHHHHHHHcCCCeEEeCC
Q 006649 113 SA-DGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 113 Sa-~~d~e~a~kAl~~GA~DYLlKP 136 (637)
-+ ..-...+. ..+||.+-+
T Consensus 110 vGg~gvp~evy-----e~aDynlgv 129 (176)
T PRK03958 110 VGAEKVPREVY-----ELADWNVAV 129 (176)
T ss_pred EcCCCCCHHHH-----hhCCEEecc
Confidence 54 33233332 246777643
No 143
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=76.37 E-value=2.3 Score=44.15 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
..++++++|.++|+ +..||.+.||+.+|+|+..
T Consensus 198 ~~isl~~lA~~~~l-S~~~l~r~Fk~~~G~tp~~ 230 (290)
T PRK10572 198 SEFDIESVAQHVCL-SPSRLAHLFRQQLGISVLR 230 (290)
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 78999999999998 5689999999999999963
No 144
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.09 E-value=13 Score=42.09 Aligned_cols=120 Identities=10% Similarity=0.091 Sum_probs=62.8
Q ss_pred CCCCCCCcccccccCCCC-CCCccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 12 GGSGYGSSRAADVAVPDQ-FPAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 12 gGs~~~~~~~~~~~~~~~-fp~girVLIVDDD~~~---re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
|.+|.|.++..--..... +-.|.+|++++-|+.- .+.++.+.+..+..+..+.+..++.+.++.. .+|+||+|.
T Consensus 230 GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDT 307 (432)
T PRK12724 230 GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDT 307 (432)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeC
Confidence 335555555333222111 3457799999988722 2234444444456666666666777777643 499999996
Q ss_pred --CCCC-CCHHHHHHHH-hcc----CCCcEEEEeccCCHHHHHHHHH----cCCCeEE
Q 006649 88 --HMPD-MDGFKLLEHI-GLE----MDLPVIMMSADGRVSAVMRGIR----HGACDYL 133 (637)
Q Consensus 88 --~MPd-mDGlELLe~I-r~~----~~IPVIILSa~~d~e~a~kAl~----~GA~DYL 133 (637)
.++. .+-++-+..+ +.. +.-.+++|++....+.+.++++ .|.+..|
T Consensus 308 aGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 308 AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred CCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 2221 1223323332 211 2234667777766655544443 3455544
No 145
>PRK13503 transcriptional activator RhaS; Provisional
Probab=74.76 E-value=3.5 Score=42.17 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.5
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+|++++|+++|++ ..||+++||+.+|+|+.
T Consensus 186 ~~~tl~~lA~~~~lS-~~~l~r~Fk~~~G~S~~ 217 (278)
T PRK13503 186 EEVNWEALADQFSLS-LRTLHRQLKQQTGLTPQ 217 (278)
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHhCcCHH
Confidence 478999999999865 58899999999999986
No 146
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=74.02 E-value=81 Score=30.71 Aligned_cols=115 Identities=15% Similarity=0.035 Sum_probs=74.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH----HHH
Q 006649 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL----LEH 100 (637)
Q Consensus 32 ~girVLIV----DDD~~~re~Lk~lL~~~gy~V~---~asng~EALelLre~~~~pDLVIlDI~MPdmDGlEL----Le~ 100 (637)
...||||. |-|..-.+.+.+.|...||+|. ...+.+|+.....++. .|+|.+-..-. ...++ .+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl~g--~h~~l~~~lve~ 86 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSLDG--GHLTLVPGLVEA 86 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEeccc--hHHHHHHHHHHH
Confidence 34567765 7777778889999999999986 4678889988876654 88877755322 23334 444
Q ss_pred HhccCCCcEE-EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 101 IGLEMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 101 Ir~~~~IPVI-ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
+++.---.|+ +.-+.--.+...+..++|++.++.--....+...-+.+.+
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 4433212233 4444444455566677999999887677766655554443
No 147
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=74.00 E-value=30 Score=36.28 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=68.0
Q ss_pred HHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHH
Q 006649 48 ILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 48 ~Lk~lL~~~gy~--V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~k 123 (637)
.|++.|..-... +........+.+++.... +|.|++|..-...|--++...++. ...++.++=....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAG--FDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 456666553222 222233346666666544 999999998887777676666652 34566666667788999999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006649 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (637)
Q Consensus 124 Al~~GA~DYLlKPi-s~eEL~~~Lq~V 149 (637)
+++.||.+.+.--+ +.++.+.+++.+
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999887555 567777776654
No 148
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=73.29 E-value=36 Score=36.11 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=67.5
Q ss_pred HHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHH
Q 006649 48 ILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 48 ~Lk~lL~~~gy--~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir--~~~~IPVIILSa~~d~e~a~k 123 (637)
.|++.|..-.. .+........+.+++.... ||.|++|.+-...|--++...++ ....+..++=....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G--fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcC--CCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 35566655322 2222333346666666543 99999999887777666666664 234455566667788899999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006649 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (637)
Q Consensus 124 Al~~GA~DYLlKPi-s~eEL~~~Lq~V 149 (637)
+++.||.+.+.--+ +.++.+.+++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999988666 567777666654
No 149
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=72.79 E-value=33 Score=31.30 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhcc-CCCcEEEEeccCCHH
Q 006649 44 TCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLE-MDLPVIMMSADGRVS 119 (637)
Q Consensus 44 ~~re~Lk~lL~~~gy~V~~--asng~EALelLre~~~~pDLVIlDI~MPdm-DGlELLe~Ir~~-~~IPVIILSa~~d~e 119 (637)
.....+..+++..++.+.. ....++.++.+... ..||+|.+....+.. ...++++.+|+. ++++||+=-.+...
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~- 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF- 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh-
Confidence 4456788888888877653 33456666766652 249999999855544 356677888754 56666553333222
Q ss_pred HHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 120 AVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 120 ~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
.....+.....||+..=--..-+...++.+
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 122224455668888765555555555554
No 150
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.79 E-value=39 Score=35.34 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=67.0
Q ss_pred HHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHH
Q 006649 49 LEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (637)
Q Consensus 49 Lk~lL~~~gy--~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~kA 124 (637)
|++.|..-.. .+........+.+++.... +|.|++|.+-..+|--++...++. ...++.++=....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG--FDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 4455554322 2223333346666666544 999999998887777666666652 345566666678889999999
Q ss_pred HHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006649 125 IRHGACDYLIKPI-REEELKNIWQHV 149 (637)
Q Consensus 125 l~~GA~DYLlKPi-s~eEL~~~Lq~V 149 (637)
++.||.+.+.--+ +.++.+++++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999887555 567777766654
No 151
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=71.80 E-value=4 Score=42.44 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=32.9
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
|.+.+..+.+++.+||.++|.+ ..||.+.||+. |+|+.
T Consensus 206 I~~~l~~~~ls~~~lA~~~giS-~r~L~r~Fk~~-G~T~~ 243 (302)
T PRK09685 206 IDQSIQEEILRPEWIAGELGIS-VRSLYRLFAEQ-GLVVA 243 (302)
T ss_pred HHHhcCCCCCCHHHHHHHHCCC-HHHHHHHHHHc-CCCHH
Confidence 5577888999999999999876 68999999985 98875
No 152
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.35 E-value=50 Score=33.22 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 66 AAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 66 g~EALelLre~~~~pD-LVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..+..+.+.+.. .| ++++|+.--++ .| +++++++++..++|||.-.+-.+.+.+.++++.||+..+.
T Consensus 147 ~~~~~~~~~~~g--~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 147 LEELAKRLEELG--LEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHHhCC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 344555555443 66 77788854332 22 6788888766789999988889999999999999998775
No 153
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=69.67 E-value=3.4 Score=43.85 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=29.1
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..++++++|+++|++ ..||.+.||+.+|+|++
T Consensus 233 ~~~sl~~lA~~~~~S-~~~l~r~fk~~~g~s~~ 264 (322)
T PRK09393 233 EPHTVASLAARAAMS-PRTFLRRFEAATGMTPA 264 (322)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHH
Confidence 458999999999987 78999999999999986
No 154
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.47 E-value=19 Score=37.13 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCCCcEEEEeccCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa~~d------~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
++++++++|...++|+++|+-++. ...+.++.+.|+++.+.-....+++...++.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 466677776555789888876553 56688899999999999767778777666655
No 155
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=69.20 E-value=65 Score=32.33 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=49.2
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPd-------mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+.+.+++..+ .+.. .|.|+++-.-.+ ...+++++++++..++||++.-+-.+.+.+.+++..||+...+
T Consensus 108 ~v~~~~~~~~~-~~~g--ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 108 TVTSVEEARKA-EAAG--ADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred eCCCHHHHHHH-HHcC--CCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 34455555443 3333 798887653111 2457788888766679999888888878899999999988765
Q ss_pred C
Q 006649 135 K 135 (637)
Q Consensus 135 K 135 (637)
-
T Consensus 185 g 185 (236)
T cd04730 185 G 185 (236)
T ss_pred c
Confidence 3
No 156
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=68.99 E-value=46 Score=33.67 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=55.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC-------------eEEEECCHHHHHHHHHHcC-CCceEEEEeCC-CCCCCHHHH
Q 006649 35 RVLVVDDDITCLRILEQMLRRC--LY-------------NVTTCSQAAVALDILRERK-GCFDVVLSDVH-MPDMDGFKL 97 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~--gy-------------~V~~asng~EALelLre~~-~~pDLVIlDI~-MPdmDGlEL 97 (637)
+-.||.--+..++.+++++.-+ |+ .|..+.+.+++++.+++.. ..|-+|-+|.. -|..-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5678888888888888888743 21 2788999999999887632 34999999998 345446665
Q ss_pred HHHHhccCCCcEEEE--eccCCHHHHHHHHHcCCCeEEeCCCCH
Q 006649 98 LEHIGLEMDLPVIMM--SADGRVSAVMRGIRHGACDYLIKPIRE 139 (637)
Q Consensus 98 Le~Ir~~~~IPVIIL--Sa~~d~e~a~kAl~~GA~DYLlKPis~ 139 (637)
+++.-...+-|++++ |+..-.+.+. ..+||++.|+.-
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEccccc
Confidence 555433456677666 4454444443 357999999853
No 157
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=68.16 E-value=6 Score=40.75 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=28.6
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
..++++++|+++|+ +..||.+.||+.+|+|+..
T Consensus 201 ~~~sl~~lA~~~~~-S~~~l~r~Fk~~~G~t~~~ 233 (287)
T TIGR02297 201 QHLRLPEYADRLGI-SESRLNDICRRFSALSPKR 233 (287)
T ss_pred cCCCHHHHHHHHCC-CHHHHHHHHHHHhCCCHHH
Confidence 36899999999986 4689999999999999863
No 158
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=68.16 E-value=41 Score=33.71 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=62.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc
Q 006649 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE 104 (637)
Q Consensus 34 irVLIV----DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPd-mDG-lELLe~Ir~~ 104 (637)
-+|++. |.|..=...+..+|+..||+|+... ..++.++.+++.. ||+|.+-..|.. +.. .++++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 356555 4556666778888888999998543 5578888888776 999999987764 222 3455666644
Q ss_pred --C-CCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 105 --M-DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 105 --~-~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+ +++|+ +-+..-.. .-+-+.||+.|-.
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 2 34544 44432221 2345779998864
No 159
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=67.37 E-value=42 Score=35.84 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=57.7
Q ss_pred EEEEeCCHHHHH---HHHHHHH----hC--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006649 36 VLVVDDDITCLR---ILEQMLR----RC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (637)
Q Consensus 36 VLIVDDD~~~re---~Lk~lL~----~~--gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~ 106 (637)
|||=|+|....- .++..+. .. .....++.+.++|.+.+... +|+|++| +|+-.+-.+..+.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~G---aDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQAS---PDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcC---cCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 666666654432 3444443 21 22345788999999988643 8999999 3444344444455542222
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCe
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~D 131 (637)
-.+|-.|+--+.+.+.+-...|++-
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~ 259 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDL 259 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCE
Confidence 2356678888888888888888865
No 160
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=67.30 E-value=65 Score=38.82 Aligned_cols=117 Identities=10% Similarity=-0.037 Sum_probs=75.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHhc
Q 006649 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIGL 103 (637)
Q Consensus 33 girVLIV----DDD~~~re~Lk~lL~~~gy~V~~---asng~EALelLre~~~~pDLVIlDI~MPd-m-DGlELLe~Ir~ 103 (637)
..+|+|. |.+..-...+..+|...||+|.. ..+.+++.+...+.. +|+|++-..+.. + ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHh
Confidence 3466665 34444555677778888999853 346778888887765 898887665543 2 23456677765
Q ss_pred cCCCcE-EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 104 EMDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 104 ~~~IPV-IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
...-.| |++.+..-.+......+.|+++|+..=.+..++...+++.+.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 421123 445544223333556789999999988888887777766554
No 161
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.11 E-value=53 Score=35.31 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=55.3
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 36 VLVVDDDITCLRILEQMLRR----CL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~----~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
|||=|.|-.+.-.+...+++ .. ....++.+.+++.+.+... +|+|.+| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~g---aDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEG---AELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcC---CCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 55555554333233333332 21 2445789999999998643 8999999 3432122223333332333335
Q ss_pred EEEeccCCHHHHHHHHHcCCCeE
Q 006649 110 IMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DY 132 (637)
|..|+--+.+.+.+-.+.|++-+
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 77788888889988889998643
No 162
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=67.05 E-value=5.1 Score=32.55 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.4
Q ss_pred CCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 258 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 258 gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.+++.+||.++|. +..+|.+.|++..|++++
T Consensus 1 ~~~~~~la~~~~~-s~~~l~~~f~~~~~~s~~ 31 (84)
T smart00342 1 PLTLEDLAEALGM-SPRHLQRLFKKETGTTPK 31 (84)
T ss_pred CCCHHHHHHHhCC-CHHHHHHHHHHHhCcCHH
Confidence 3689999999998 488999999999998875
No 163
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=65.85 E-value=9.3 Score=38.68 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=51.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCH--HHHHHHHhccCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDG--FKLLEHIGLEMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~--MPdmDG--lELLe~Ir~~~~IP 108 (637)
+++||+||....+--.|..++...+.+|.+..+....++.++... ||.|++-=- -|..-| .+++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~--pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK--PDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC--CCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 468999999999999999999998888877776543344555444 899988532 222222 3444444 34578
Q ss_pred EEEE
Q 006649 109 VIMM 112 (637)
Q Consensus 109 VIIL 112 (637)
|+-+
T Consensus 77 iLGV 80 (191)
T COG0512 77 ILGV 80 (191)
T ss_pred EEEE
Confidence 7643
No 164
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=65.61 E-value=1.1e+02 Score=32.74 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=75.1
Q ss_pred CccEEEEEeCCH-------HHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCC--H---HHH
Q 006649 32 AGLRVLVVDDDI-------TCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMD--G---FKL 97 (637)
Q Consensus 32 ~girVLIVDDD~-------~~re~Lk~lL~~~gy~V~~as--ng~EALelLre~~~~pDLVIlDI~MPdmD--G---lEL 97 (637)
..+|+=|+-|+. ...+.-+. |-+.||.|.... +..-|.++.+.. . ..++-+--|-.+ | -..
T Consensus 106 ~wIKLEVi~D~~~LlPD~~etl~Aae~-Lv~eGF~VlPY~~~D~v~a~rLed~G---c-~aVMPlgsPIGSg~Gl~n~~~ 180 (267)
T CHL00162 106 NFVKLEVISDPKYLLPDPIGTLKAAEF-LVKKGFTVLPYINADPMLAKHLEDIG---C-ATVMPLGSPIGSGQGLQNLLN 180 (267)
T ss_pred CeEEEEEeCCCcccCCChHHHHHHHHH-HHHCCCEEeecCCCCHHHHHHHHHcC---C-eEEeeccCcccCCCCCCCHHH
Confidence 356777774432 33333333 445599886444 334444433321 2 234444334222 2 356
Q ss_pred HHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006649 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 98 Le~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL-----lKPis~eEL~~~Lq~Vlrk 152 (637)
++.|++..++|||+=.+-...+.+.+|+++|+++.+ .|--++.++..+++.+++.
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999864 5777889999888887653
No 165
>PRK12704 phosphodiesterase; Provisional
Probab=64.89 E-value=7.8 Score=44.71 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=40.1
Q ss_pred CCc-EEEEeccCCHH--HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 106 DLP-VIMMSADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 106 ~IP-VIILSa~~d~e--~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
++| +|+||+.+... .+..+++.++.|+..||++.+++...++.-+..
T Consensus 248 dtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 248 DTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 444 89999998876 899999999999999999999998877765543
No 166
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=64.55 E-value=7.1 Score=41.39 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=28.6
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+.+++.+||+++|++ ..||.+.||+.+|+|+.
T Consensus 206 ~~~tl~~lA~~~~~S-~~~l~r~Fk~~~G~t~~ 237 (302)
T PRK10371 206 QALTINDVAEHVKLN-ANYAMGIFQRVMQLTMK 237 (302)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHhCCCHH
Confidence 679999999999765 58999999999999986
No 167
>PRK15340 transcriptional regulator InvF; Provisional
Probab=64.28 E-value=5.5 Score=40.96 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 231 QQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 231 ~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++.+..|+|-.- |++-. ....+++++|.++|++ ..||++.||+++|+|++
T Consensus 103 ~~~~r~~e~y~l~~~----Ll~~~-~~~~sleeLA~~~gvS-~r~f~RlFk~~~G~tpk 155 (216)
T PRK15340 103 LALLRKSESYWLVGY----LLAQS-TSGNTMRMLGEDYGVS-YTHFRRLCSRALGGKAK 155 (216)
T ss_pred HHHHHHHHHHHHHHH----HHhCc-cCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHH
Confidence 445555555554432 22222 3567999999999865 58999999999999986
No 168
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=63.93 E-value=1.3e+02 Score=31.48 Aligned_cols=94 Identities=17% Similarity=0.068 Sum_probs=59.0
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeC---CCCCCCHHHHHHHHhc-cC-CCcE
Q 006649 37 LVVDD-DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIGL-EM-DLPV 109 (637)
Q Consensus 37 LIVDD-D~~~re~Lk~lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI---~MPdmDGlELLe~Ir~-~~-~IPV 109 (637)
|++.+ ++...+.+.....+.|..+ ..+.+.+|+...... .+|+|-+.- ..-..| ++...++.. .+ ..++
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLV 214 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEE
Confidence 33334 3334444444444556654 468888888665543 378876532 112223 566666643 33 3588
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
|..++-.+.+.+.++.++||+.++.
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999998654
No 169
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=63.82 E-value=25 Score=36.75 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=44.7
Q ss_pred CHHHHHHHHhcc-CCCcEEEEeccCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 93 DGFKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 93 DGlELLe~Ir~~-~~IPVIILSa~~d------~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+.+++++.+|+. .++|+++|+-++. ..++.++.+.|++..+.-....++....++.+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 457778888755 6899888776654 57788999999999999888888877666654
No 170
>PLN02591 tryptophan synthase
Probab=63.26 E-value=25 Score=36.93 Aligned_cols=57 Identities=9% Similarity=0.182 Sum_probs=45.1
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 93 DGFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 93 DGlELLe~Ir~~~~IPVIILSa~~d------~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+.+++++++|...++|+|+||=++. .....+|-+.|+++.|+-.+..+|.......+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 4688888888667899888875442 34577889999999999999998888777665
No 171
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=63.19 E-value=62 Score=34.80 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHH
Q 006649 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI 125 (637)
Q Consensus 52 lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI~M-----PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl 125 (637)
.++..+..| ..+.+.++|..+.+. ..|.|++.-.- ....-++++.+++...++|||.--+-.+.+.+.+++
T Consensus 104 ~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al 180 (307)
T TIGR03151 104 RLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF 180 (307)
T ss_pred HHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH
Confidence 334445443 356777777666543 38998884421 222358888888766679999988889999999999
Q ss_pred HcCCCeEEe
Q 006649 126 RHGACDYLI 134 (637)
Q Consensus 126 ~~GA~DYLl 134 (637)
..||+....
T Consensus 181 ~~GA~gV~i 189 (307)
T TIGR03151 181 ALGAEAVQM 189 (307)
T ss_pred HcCCCEeec
Confidence 999998765
No 172
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=63.14 E-value=25 Score=37.02 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=44.2
Q ss_pred CHHHHHHHHh-ccCCCcEEEEecc------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 93 DGFKLLEHIG-LEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 93 DGlELLe~Ir-~~~~IPVIILSa~------~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+.+++++++| ...++|+|+|+=+ .-.....++.+.|+++.|+-.+..+|....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3577888887 5578999888843 3345588899999999999888888887776665
No 173
>COG2207 AraC AraC-type DNA-binding domain-containing proteins [Transcription]
Probab=62.81 E-value=11 Score=33.17 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 256 v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..++++.+||.++|. +..+|.+.||+.+|+|+.
T Consensus 34 ~~~~~l~~la~~~g~-S~~~l~r~f~~~~g~s~~ 66 (127)
T COG2207 34 AEPLTLEDLARRLGM-SRRTLSRLFKKETGTSPS 66 (127)
T ss_pred cCCCCHHHHHHHHCC-CHHHHHHHHHHHHCCCHH
Confidence 345899999999997 568899999999999985
No 174
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=62.76 E-value=47 Score=35.70 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=62.1
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeC---------------------------------CC--CCCCHHHHHHHHhccC
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDV---------------------------------HM--PDMDGFKLLEHIGLEM 105 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI---------------------------------~M--PdmDGlELLe~Ir~~~ 105 (637)
.-|++.+||+...+.. +|+|=+-+ .. ....++++++++.+..
T Consensus 117 AD~stleEal~a~~~G---ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 117 CGARNLGEALRRISEG---AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred ccCCCHHHHHHHHHCC---CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 4577888888877643 78877655 00 1224788999987766
Q ss_pred CCcEE--EEeccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006649 106 DLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (637)
Q Consensus 106 ~IPVI--ILSa~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~Lq~Vlrk 152 (637)
.+||| ...+-.+.+.+.++++.||+.++. +.-++.+....+..++.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 79997 666667899999999999998754 333556555555555443
No 175
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.51 E-value=38 Score=36.28 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=58.4
Q ss_pred cEEEEE--eCCHHHHHH---HHHHHHhCCCeEEEECCHHHHHHH-------------HHHcCCCceEEEEeCCCCCCCHH
Q 006649 34 LRVLVV--DDDITCLRI---LEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (637)
Q Consensus 34 irVLIV--DDD~~~re~---Lk~lL~~~gy~V~~asng~EALel-------------Lre~~~~pDLVIlDI~MPdmDGl 95 (637)
|+|.|+ -+.+...+. +.+.|...++.+.........+.. .......+|+||+ -+.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 567777 333444444 444455557777654432222110 0111123688777 356773
Q ss_pred HHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 96 KLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 96 ELLe~Ir~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+++..+. ..++||+-+- .|-.+||. .++++++..+++++++..+
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 3444432 3478887543 35567777 6788999999999987664
No 176
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=61.50 E-value=57 Score=31.14 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=48.2
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPd--------mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
.+.+..++.+..+. .+|.|+++-..|. ..|++.++++++..++||+++.+- +.+.+.+++..|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 34556666655442 3899988654332 346788888876677898888766 46788899999998765
Q ss_pred e
Q 006649 134 I 134 (637)
Q Consensus 134 l 134 (637)
.
T Consensus 177 ~ 177 (196)
T cd00564 177 V 177 (196)
T ss_pred E
Confidence 4
No 177
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=61.48 E-value=30 Score=36.79 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=68.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILS 113 (637)
.|.+.=.++.....+..+|....|.+..+.++++.++.++.+++.+|.+|+...... ..+..++.+ ..-+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~---~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL---PPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT---HHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc---HHHHHHHHHcCccccEEEEe
Confidence 456666778888899999988889999999999999999988888999999875543 566777754 3457988886
Q ss_pred ccCCHHHHHHHHHcCCCeE-----EeCCCCHHHHHHHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACDY-----LIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DY-----LlKPis~eEL~~~Lq~Vlrk 152 (637)
..... ...-..|..+| .++.-..++|-..+.+++.+
T Consensus 79 ~~~s~---~~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsr 119 (283)
T PF07688_consen 79 SSESA---STTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISR 119 (283)
T ss_dssp ---S-----TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHH
T ss_pred cCccc---ccCCCCCceeeehHheEccHHHHHHHHHHHHHHHHH
Confidence 53221 00112333333 44444566666666665544
No 178
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=61.38 E-value=7.1 Score=37.22 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~ 115 (637)
.++++.++.. .+|+||+|. ++..- .....+ ...+..+|+++..
T Consensus 81 ~~~~~~~~~~--~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 81 PEVIRVLDAA--GFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHhc--CCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 4566666554 499999999 66542 222222 2355667777665
No 179
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=60.97 E-value=1.7e+02 Score=29.25 Aligned_cols=76 Identities=14% Similarity=-0.003 Sum_probs=51.3
Q ss_pred hCCCeE-EEECCHHHHHHHHHHcCCCceEEEEe-C--CCCCCCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcC
Q 006649 55 RCLYNV-TTCSQAAVALDILRERKGCFDVVLSD-V--HMPDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHG 128 (637)
Q Consensus 55 ~~gy~V-~~asng~EALelLre~~~~pDLVIlD-I--~MPdmDGlELLe~Ir~~--~~IPVIILSa~~d~e~a~kAl~~G 128 (637)
..+..+ ..+.+.+++.+..+. . +|.+.+- . ... ..+++++++++.. .++|||...+-.+.+.+.++++.|
T Consensus 119 ~~g~~~~v~v~~~~e~~~~~~~-g--~~~i~~t~~~~~~~-~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 119 ELGMEVLVEVHDEEELERALAL-G--AKIIGINNRDLKTF-EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HcCCeEEEEECCHHHHHHHHHc-C--CCEEEEeCCCcccc-CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 345554 356677776665543 3 7877654 1 111 1245777887644 468999999999999999999999
Q ss_pred CCeEEe
Q 006649 129 ACDYLI 134 (637)
Q Consensus 129 A~DYLl 134 (637)
|+..++
T Consensus 195 a~gviv 200 (217)
T cd00331 195 ADAVLI 200 (217)
T ss_pred CCEEEE
Confidence 998764
No 180
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=60.76 E-value=40 Score=33.89 Aligned_cols=66 Identities=9% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC-CCeEEe
Q 006649 67 AVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pD-LVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~G-A~DYLl 134 (637)
.+..+.+.+.. ++ ++++|+..-++ .| +++++++++..++|||.-.+-.+.+.+.++++.| |++.+.
T Consensus 149 ~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 45555555433 56 88888865432 34 6888888766679999988889999999999988 887765
No 181
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.32 E-value=79 Score=27.86 Aligned_cols=90 Identities=17% Similarity=0.062 Sum_probs=53.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng--~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+|++||.++...+.+ ...++.+.. .++ .+.|+.+.-. ..+.||+...-. ..-+.++..+++ .+..+||
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~-gd~~~~~~l~~a~i~--~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIY-GDATDPEVLERAGIE--KADAVVILTDDD-EENLLIALLARELNPDIRII 93 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEE-S-TTSHHHHHHTTGG--CESEEEEESSSH-HHHHHHHHHHHHHTTTSEEE
T ss_pred CEEEEEECCcHHHHHH----Hhccccccc-ccchhhhHHhhcCcc--ccCEEEEccCCH-HHHHHHHHHHHHHCCCCeEE
Confidence 5899999998764443 333566544 333 2445544433 388888876522 334556666665 4567777
Q ss_pred EEeccCCHHHHHHHHHcCCCeEE
Q 006649 111 MMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYL 133 (637)
+.. .+.+......+.|++..+
T Consensus 94 ~~~--~~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 94 ARV--NDPENAELLRQAGADHVI 114 (116)
T ss_dssp EEE--SSHHHHHHHHHTT-SEEE
T ss_pred EEE--CCHHHHHHHHHCCcCEEE
Confidence 655 344556666778887655
No 182
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.82 E-value=36 Score=38.53 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=37.5
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEeC
Q 006649 31 PAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (637)
Q Consensus 31 p~girVLIVDDD~~---~re~Lk~lL~~~gy~V~~asng~EALelLre~~--~~pDLVIlDI 87 (637)
..+.+|++++-|+. ..+.|+.+-+..++.+..+.+..+..+.++... ..+|+||+|.
T Consensus 267 ~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 45679999998864 334455554455777777777766555554322 1489999997
No 183
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=59.02 E-value=1.2e+02 Score=31.89 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCe------EEeCCCCHHHHHHHHHHHHHHh
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~D------YLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++.+.++++..++|||..-+-.+.+.+.+++..||+. ++.+|.-..++++-+.+.+.++
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 3667777766679999998899999999999999875 5667755556666665555443
No 184
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=58.85 E-value=1.1e+02 Score=32.02 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=65.7
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHH
Q 006649 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (637)
Q Consensus 49 Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~kA 124 (637)
++..|..-. +.+..........+.+.... +|.|++|++-...|--++...++. .....+++=....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g--~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG--FDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 445555422 22333334456666666544 999999997776777777666653 234455665566777889999
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHHH
Q 006649 125 IRHGACDYLI-KPIREEELKNIWQHV 149 (637)
Q Consensus 125 l~~GA~DYLl-KPis~eEL~~~Lq~V 149 (637)
++.||.+.+. |--+.++.+++++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999998755 445788888777764
No 185
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=58.66 E-value=39 Score=33.55 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH---HHHHHHHh
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG---FKLLEHIG 102 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~---V~~asng~EALelLre~~~~pDLVIlDI~MPdmDG---lELLe~Ir 102 (637)
-+|..||-++.....+++-++..+.. .....+...++..+......+|||++| -|-..+ .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD--PPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD--PPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC--CCcccchHHHHHHHHHH
Confidence 47999999999999999999876532 345678888887765444569999999 344333 44666664
No 186
>PRK13502 transcriptional activator RhaR; Provisional
Probab=57.93 E-value=9.3 Score=39.37 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=28.0
Q ss_pred CCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 258 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 258 gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
.++.+++|.++|. +..|+.++||+++|+|++.
T Consensus 192 ~~~~~~lA~~~~i-S~~~L~r~fk~~~G~t~~~ 223 (282)
T PRK13502 192 PFALDAFCQQEQC-SERVLRQQFRAQTGMTINQ 223 (282)
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 4889999999975 4689999999999999864
No 187
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=57.81 E-value=8.7 Score=40.21 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=28.6
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++++||.++|++- .+|.|.||+.+|+|+.
T Consensus 20 ~~~~l~~lA~~~~~S~-~~l~r~F~~~~g~s~~ 51 (289)
T PRK15121 20 QPLSLDNVAAKAGYSK-WHLQRMFKDVTGHAIG 51 (289)
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHHHHCcCHH
Confidence 4599999999999765 6899999999999986
No 188
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=57.41 E-value=64 Score=34.77 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=45.7
Q ss_pred CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006649 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 93 DGlELLe~Ir~~~~IPVI--ILSa~~d~e~a~kAl~~GA~DYL-----lKPis~eEL~~~Lq~Vlrk 152 (637)
-++++++++++...+||| ...+-.+.+.+..++++||+... .|.-++.+..+.+..++.+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 478999998776679998 56666789999999999999874 4555677766666665544
No 189
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=57.18 E-value=35 Score=36.05 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=44.7
Q ss_pred CHHHHHHHHhccCCCcEEEEeccC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 93 DGlELLe~Ir~~~~IPVIILSa~~------d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+.+++++++|...++|+|+||=++ -.....+|.+.|+++.|.-....+|....++.+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 457888888866889988887543 345688999999999999988888877666655
No 190
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=56.67 E-value=87 Score=36.06 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=56.3
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeC--------------CCC
Q 006649 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDV--------------HMP 90 (637)
Q Consensus 32 ~girVLIVDD----D~~~re~Lk~lL~~~-gy~V~--~asng~EALelLre~~~~pDLVIlDI--------------~MP 90 (637)
.|..++.+|- .....+.++++-+.. ...|. .+.+.++|..++.. ..|.|.+.+ -.|
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCC
Confidence 4566677663 333334444444332 22222 35555666666543 267775543 223
Q ss_pred CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 91 dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
..+-+.-+.++....++|||.=-+......+.+|+.+||+....=
T Consensus 329 ~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 329 QASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 322222222222345688887667788899999999999986653
No 191
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=56.64 E-value=1.9e+02 Score=29.14 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=44.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.|++|+-....+.-|+.+++.+. ..+|||. |... ...+-+..|..+++.++-+.++|.+++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~-~~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIA-SDIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEE-CCCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 47766543323345666777764 4578775 3222 24455677888999999999999999998875
No 192
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=56.52 E-value=1.2e+02 Score=32.11 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=41.7
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCe------EEeCCCCHHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~D------YLlKPis~eEL~~~Lq~Vlrk 152 (637)
+++++++++..++|||...+-.+.+.+.+++..||+. ++..|.-..++++-+++.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 6778888766689999999999999999999999864 233454455555555444443
No 193
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=56.33 E-value=58 Score=33.06 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=47.0
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEeCC
Q 006649 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVH 88 (637)
Q Consensus 28 ~~fp~girVLIVDDD~~~re~Lk~lL~~~gy--~V~-~asng~EALelLre~~--~~pDLVIlDI~ 88 (637)
..+|.+-+|.-||-++...+..++.++..++ .|. ...++.+.+..+.... ..||+|++|..
T Consensus 65 ~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 65 EALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred HhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 3456667999999999999999999998765 343 5678888888776532 35999999985
No 194
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.25 E-value=2.1e+02 Score=30.71 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=60.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCC
Q 006649 36 VLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDL 107 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~------gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~--~~I 107 (637)
|||-|+|..+. .+...+... .....++.+.+++.+.+... +|+|.+|=..|+ +--+..+.++.. ..-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~ag---aDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAG---ADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---cCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886655 666666532 12335789999999998743 799999976554 222333334322 123
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
..|..|+--+.+.+.+..+.|++-.
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEE
Confidence 3566787888888988889998754
No 195
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=56.03 E-value=9.1 Score=39.43 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=26.5
Q ss_pred CCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 259 LTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 259 Lti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
.+..++|.++|+ +..||.+.||+.+|+|++.
T Consensus 189 ~~l~~lA~~~~~-s~~~l~r~fk~~~G~t~~~ 219 (278)
T PRK10296 189 SALENMVRLSGK-SQEYLTRATRRYYGKTPMQ 219 (278)
T ss_pred hhHHHHHHHhCC-CHHHHHHHHHHHHCcCHHH
Confidence 368899988876 6789999999999999863
No 196
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.90 E-value=52 Score=37.03 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=37.4
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEeC
Q 006649 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~---~re~Lk~lL~~~gy~V~~asng~EALelLre~~--~~pDLVIlDI 87 (637)
.+.+|.+|+-|+. ..+.++.+-+..+..+..+.+..+..+.+.... ..+|+||+|.
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 5679999998864 244555555555666666777776655554322 2489999998
No 197
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=55.30 E-value=98 Score=33.96 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=74.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH------hCCCeE-E-EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHH
Q 006649 32 AGLRVLVVDDDITCLRILEQMLR------RCLYNV-T-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~------~~gy~V-~-~asng~EALelLre~~~~pDLVIlDI~MP-----dmDGlELL 98 (637)
..+|+=|+.|+.....-+...++ +.|+.| . +..+..+|-.+.. .. + +.++-+--| +..--+.+
T Consensus 166 ~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~-~g--~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLED-AG--A-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh-cC--C-EEEeeccccccCCCCCCCHHHH
Confidence 45677777766544443333332 337877 3 4455555555443 32 4 333321111 12234667
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006649 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 99 e~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL-----lKPis~eEL~~~Lq~Vlrk 152 (637)
+.+.+.+++|||+=.+-...+.+.+|+++|+++.| .|--++..+.+++++++..
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 77766688999998999999999999999999875 4666788888888877653
No 198
>PRK10130 transcriptional regulator EutR; Provisional
Probab=55.09 E-value=11 Score=41.18 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 252 ELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 252 eLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+.+..+ +++.+||.++|. +..|+.+.||+++|+|+.
T Consensus 251 ~~~~~~-ltv~~lA~~~gv-S~r~L~r~Fk~~~G~sp~ 286 (350)
T PRK10130 251 ENMSEP-VTVLDLCNQLHV-SRRTLQNAFHAILGIGPN 286 (350)
T ss_pred hhhcCC-CCHHHHHHHHCC-CHHHHHHHHHHHHCcCHH
Confidence 444455 999999999975 458899999999999996
No 199
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.06 E-value=1.2e+02 Score=33.17 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|..+++.+. ...|||.--...+...+.+.+. ..+++..|-+.++|...+..++.
T Consensus 334 g~~~lEAma--~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 334 GHNPLEPAA--FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred CCCHHHHHH--hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 444455442 4678875322244444444332 12467778899999999988764
No 200
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.98 E-value=66 Score=33.19 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+.++.+.+.. .-.+|++|+..-++ .| +++++++.+..++|||+-.+-.+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44445444432 23799999987653 33 6677888766789999988899999999999999998876
No 201
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.94 E-value=1.8e+02 Score=31.95 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=63.2
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEeCC----------CC-CCC--H
Q 006649 35 RVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVH----------MP-DMD--G 94 (637)
Q Consensus 35 rVLIVDD----D~~~re~Lk~lL~~~g-y~V~--~asng~EALelLre~~~~pDLVIlDI~----------MP-dmD--G 94 (637)
.++++|- .....+.++++-+.+. ..|. .+.+.++|..+++. ..|.|.+-+. .. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 6788863 2334444444444332 2332 47788888887764 3788764321 11 112 4
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
+..+..+.+..++|||.-.+-.....+.+|+..||+....=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55677776555799998888899999999999999987664
No 202
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=54.93 E-value=75 Score=28.26 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=48.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cC-CCcEEE
Q 006649 40 DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EM-DLPVIM 111 (637)
Q Consensus 40 DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPdm-DGlELLe~Ir~-~~-~IPVII 111 (637)
|.++.-...+..+++..++++.... ..++..+.+...+ ||+|.+...+... ..++.+..+++ .+ +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~--pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEED--ADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcC--CCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEE
Confidence 5667777888889999999887543 5567777777655 9999999877653 34555556543 34 566554
No 203
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.62 E-value=63 Score=33.12 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 66 AAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 66 g~EALelLre~~~~pDLVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..+.++.+... .-.++++|+..-++ .| +++++++.....+|||+-.+-.+.+.+.++++.|+...+.
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55666666554 23699999977543 23 6778888766789999988899999999999999988765
No 204
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.97 E-value=2.1e+02 Score=27.92 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=59.9
Q ss_pred CccEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHHcCCCceEEEEeCC-CC----CCCHHHHHHH
Q 006649 32 AGLRVLVVDDDI--TCLRILEQMLRRCLYNVT----TCSQAAVALDILRERKGCFDVVLSDVH-MP----DMDGFKLLEH 100 (637)
Q Consensus 32 ~girVLIVDDD~--~~re~Lk~lL~~~gy~V~----~asng~EALelLre~~~~pDLVIlDI~-MP----dmDGlELLe~ 100 (637)
.|...+++.+.. ...+.+.+.++..+..+. .+.+..++++.+. . ..|.|.+... .+ ...+.+.+++
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~ 152 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKK 152 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHH
Confidence 445556654432 233444445555555443 4557777777433 2 3798887421 11 2356777777
Q ss_pred HhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 101 Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
++...++||++.-+- +.+.+.++++.||+.++.
T Consensus 153 ~~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 153 VKKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred HHhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 765467787665555 578899999999997654
No 205
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.83 E-value=2.1e+02 Score=33.06 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=52.5
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 79 ~pDLVIlD-I~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.+-++|+| ++|-..+.++.+-++-+++...++++-+..+...+...+..-...|-.+|++.+++...+++++..
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 36788887 566655666644333244555566555555667777889888899999999999999888887653
No 206
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=53.59 E-value=1.4e+02 Score=32.71 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=61.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHH-HHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAV-ALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~-gy~V~-~asng~E-ALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
..+||.||.- -.-...+..+.... ++++. .++...+ |-+..++.. +. +..|+ -+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~~-------eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCEV-------EELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCCH-------HHHh----cCCCEE
Confidence 4589999987 44444444443333 45554 4544444 433433322 11 22222 1232 234555
Q ss_pred EEEEec----cCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 109 VIMMSA----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 109 VIILSa----~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
+|.+.. ..-.+.+.+|++.|..=++.||+..+|..++++.+-+
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 555521 3457889999999999999999998888777766543
No 207
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=53.28 E-value=1.1e+02 Score=32.31 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=58.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
+++++|+.+.+. ++.+++.++..+. .+.......+..+.+.. .|++++=-. .+.=|..+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 345556554432 2344444444322 22222222233333322 466554222 2223556666664 467887
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
. |.... ..+.+..|..+++..|-+.++|.+.+..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 33222 3455667888999999999999999988764
No 208
>PRK13500 transcriptional activator RhaR; Provisional
Probab=53.25 E-value=12 Score=39.60 Aligned_cols=32 Identities=6% Similarity=0.145 Sum_probs=28.3
Q ss_pred CCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 258 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 258 gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
.++++++|+++|+ +..||.+.||+.+|+|++.
T Consensus 222 ~isl~~lA~~~~i-S~~~L~r~FK~~tG~T~~~ 253 (312)
T PRK13500 222 PFALDKFCDEASC-SERVLRQQFRQQTGMTINQ 253 (312)
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 4899999999975 5689999999999999863
No 209
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=52.96 E-value=1.2e+02 Score=34.27 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=51.9
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCC-CCHHHHHHHH-h-c
Q 006649 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPD-MDGFKLLEHI-G-L 103 (637)
Q Consensus 32 ~girVLIVDDD~~~---re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~--MPd-mDGlELLe~I-r-~ 103 (637)
.+.+|.+|+-|+.- .+.|+.+-+..+..+..+.+..+....++... .+|+||+|.- .+. ...++.+..+ + .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 46899999988742 23344444444666667777777666666543 4899999972 111 1233333333 3 1
Q ss_pred cCCCc-EEEEeccCCHHHHHH
Q 006649 104 EMDLP-VIMMSADGRVSAVMR 123 (637)
Q Consensus 104 ~~~IP-VIILSa~~d~e~a~k 123 (637)
...+. ++++++........+
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHH
Confidence 12233 566777665544443
No 210
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=52.07 E-value=91 Score=33.49 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=46.4
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 59 ~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
...++.+.+++.+.++.. +|+|++|- |+-.+--++.+.++....-.+|-.|+--+.+.+.+-...|++-.
T Consensus 192 IeVEv~tleqa~ea~~ag---aDiI~LDn-~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 192 IVVEADTPKEAIAALRAQ---PDVLQLDK-FSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLF 261 (284)
T ss_pred EEEECCCHHHHHHHHHcC---CCEEEECC-CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 345788999999998743 89999994 43323333344343222223566788888888888888887653
No 211
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=51.91 E-value=1.2e+02 Score=34.77 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=62.4
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006649 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (637)
Q Consensus 32 ~girVLIVDDD----~~~re~Lk~lL~~~-gy--~V~~asng~EALelLre~~~~pDLVIlDI~MPd------------m 92 (637)
.+.+++++|.. ..+.+.++.+-... .. .+..+.+.++|..+++.. .|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG---ad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG---ADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC---CCEEEECC-CCCccccceeecCCCc
Confidence 56788888864 23444444444443 22 235677888888887643 68876432 122 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 93 DGlELLe~Ir---~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.-++++..++ ...++|||.=.+-.....+.+|+.+||+....
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 2244554443 23468888777888899999999999987654
No 212
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=51.62 E-value=1.7e+02 Score=32.60 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=62.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
+++++||-|.+. ++.++++.........-.-..++..+.+.. -|++++=-. .+.=|+.+++.+. ..+|||..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 467777776553 344555544322111112233555555543 477765322 2233556666664 46888853
Q ss_pred eccCCHHHHHHHHHc---CCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~---GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.. .. ..+.++. |-.+++..|-+.++|.+.+.+++.
T Consensus 362 ~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 32 22 3344555 889999999999999999988764
No 213
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=51.46 E-value=98 Score=35.76 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=66.8
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeC--------------CCC
Q 006649 32 AGLRVLVVDDDI----TCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDV--------------HMP 90 (637)
Q Consensus 32 ~girVLIVDDD~----~~re~Lk~lL~~~-gy~V--~~asng~EALelLre~~~~pDLVIlDI--------------~MP 90 (637)
.|..|+++|--. ...+.++++=+.+ +..+ ..+.+.++|..+++. ..|.|.+-+ -.|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 467788887432 2223444444333 2333 257888888888764 379887642 123
Q ss_pred CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 91 dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
...-+..+.++....++|||.=.+-.....+.+|+.+||+....
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 33455566666555679999999999999999999999998765
No 214
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.32 E-value=1.8e+02 Score=29.85 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=56.3
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCC-CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC
Q 006649 51 QMLRRCL-YNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (637)
Q Consensus 51 ~lL~~~g-y~V~~asng~EALelLre~~~-~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~G 128 (637)
..|...+ .-|....+.+++++.++.... .+++ +.+-+-.-++++.++.+++...--+|-.-.-.+.+.+.+|++.|
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~--iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG 87 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLPV--LEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG 87 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCE--EEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC
Confidence 3444443 456677788888887765322 2564 44445555799999999754332334444455668899999999
Q ss_pred CCeEEeCCCCHHHHH
Q 006649 129 ACDYLIKPIREEELK 143 (637)
Q Consensus 129 A~DYLlKPis~eEL~ 143 (637)
|+ |++-|.-..++.
T Consensus 88 A~-FivsP~~~~~vi 101 (212)
T PRK05718 88 AQ-FIVSPGLTPPLL 101 (212)
T ss_pred CC-EEECCCCCHHHH
Confidence 96 666665433443
No 215
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=51.10 E-value=1e+02 Score=28.84 Aligned_cols=55 Identities=18% Similarity=0.031 Sum_probs=40.2
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 80 FDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 80 pDLVIlDI~MPdmDG-------lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.|.|.++-..+...+ ...+..++....+||+...+-.+.+.+.++++.||+.+..
T Consensus 137 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 137 VDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 788888877665332 2344455556789999888888878899999999887653
No 216
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.99 E-value=54 Score=34.75 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=33.9
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH---HHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI---LRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~---~re~Lk~lL~~~gy~V~~asng~EALel---Lre~~~~pDLVIlDI 87 (637)
.+.+|.+++-|.. ..+.++...+..++.+..+.+..+..+. +... ..+|+||+|.
T Consensus 102 ~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt 162 (270)
T PRK06731 102 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDT 162 (270)
T ss_pred cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 4567888877653 3444555555557777766666444333 3322 2489999997
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=50.94 E-value=74 Score=34.84 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=33.3
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECCH-------HHHHHHHHHcCCCceEEEEeCC
Q 006649 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQA-------AVALDILRERKGCFDVVLSDVH 88 (637)
Q Consensus 32 ~girVLIVDDD~---~~re~Lk~lL~~~gy~V~~asng-------~EALelLre~~~~pDLVIlDI~ 88 (637)
.+.+|++++-|. ...+.|+.+....+..+.....+ .++++.++.. .+|+||+|.-
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTa 231 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTA 231 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 567999998874 34445555555556555433221 2444554443 3899999983
No 218
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=50.81 E-value=1.5e+02 Score=30.59 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC-CCeEEe------C
Q 006649 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI------K 135 (637)
Q Consensus 67 ~EALelLre~~~~pD-LVIlDI~MPd-mDG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~G-A~DYLl------K 135 (637)
.+..+.+.+.. .| ++++|+.--+ +.| +++++++++..++|||..-+-.+.+.+.++++.| ++..+. +
T Consensus 158 ~~~~~~l~~~G--~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEKLG--AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHHcC--CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 34444554433 67 4554542211 122 5788888776789999998899999999999988 777333 3
Q ss_pred CCCHHHHHHHHH
Q 006649 136 PIREEELKNIWQ 147 (637)
Q Consensus 136 Pis~eEL~~~Lq 147 (637)
-++.+++++.++
T Consensus 236 ~~~~~~~~~~~~ 247 (254)
T TIGR00735 236 EITIGEVKEYLA 247 (254)
T ss_pred CCCHHHHHHHHH
Confidence 456666655443
No 219
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=50.76 E-value=1.7e+02 Score=27.15 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=67.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng--~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
..++++|+.+..... .+....+..+. .+...... ++..++++. .|++++=... +.-|..+++.+. ..+
T Consensus 46 ~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~ 117 (172)
T PF00534_consen 46 PNYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGC 117 (172)
T ss_dssp TTEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-
T ss_pred CCeEEEEEccccccc-cccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--ccc
Confidence 346788887333322 24444444332 34444433 466666654 4877775544 445667777764 456
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+|+ +. .....+.+..+..+++..+.+.++|...+.+++...
T Consensus 118 pvI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 118 PVIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ceee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 6664 33 233456778888999999999999999999988654
No 220
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=50.45 E-value=1.8e+02 Score=29.21 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 65 ng~EALelLre~~~~pD-LVIlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+..+.++.+.+.. .| ++++|+..-++ --+++++++++..++|||.-.+-.+.+.+.++++.||++.+.
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555432 44 66777744322 236888888776789999988888889899999999998765
No 221
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=49.76 E-value=2.4e+02 Score=30.61 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=60.4
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 33 GLRVLVVDDDI--------TCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 33 girVLIVDDD~--------~~re~Lk~lL~~~gy~V~~as--ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
.++++||.|.+ ...+.++.+....+..|.... +.++..+.+.. -|++++--...+.=|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 35666665422 223344444443333443332 23444444442 47777643322323455566553
Q ss_pred ccCCCcEEEEeccCCHHHHHHHHHcCCCeE-EeCCCCHHHHHHHHHHHHH
Q 006649 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 103 ~~~~IPVIILSa~~d~e~a~kAl~~GA~DY-LlKPis~eEL~~~Lq~Vlr 151 (637)
..+|||.. .... ..+.+..|..+| +..|.+.++|.+.+.+++.
T Consensus 300 --~G~PVI~s-~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 --AGKPVLAS-TKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred --cCCCEEEe-CCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 46887763 3322 334566788898 5578999999999988764
No 222
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=49.70 E-value=1.3e+02 Score=26.88 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=14.2
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE
Q 006649 39 VDDDITCLRILEQMLRRCLYNVTT 62 (637)
Q Consensus 39 VDDD~~~re~Lk~lL~~~gy~V~~ 62 (637)
-|.+......+.+.|...||.+..
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEE
Confidence 355555555555666666887753
No 223
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.19 E-value=1.5e+02 Score=33.21 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=42.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc------CCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~------GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.|++++-... +.-|+.+++.+. ..+|||. |.... ..+.+.. |.++++..|-+.++|.+++.+++.
T Consensus 371 aDv~vlpS~~-Eg~p~~vlEAma--~G~PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 371 LDVLVLTSIS-EGQPLVILEAMA--AGIPVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CCEEEeCchh-hcCChHHHHHHH--cCCCEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 5777664432 233556666653 4678775 43332 3344444 778999999999999999998764
No 224
>PRK13501 transcriptional activator RhaR; Provisional
Probab=48.62 E-value=16 Score=38.00 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=28.1
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++.++|.++|+ +..||++.||+.+|+|+.
T Consensus 191 e~~sl~~lA~~~~l-S~~~l~r~Fk~~~G~T~~ 222 (290)
T PRK13501 191 AYFDMADFCHKNQL-VERSLKQLFRQQTGMSIS 222 (290)
T ss_pred cCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHH
Confidence 45799999999965 568999999999999986
No 225
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=47.85 E-value=1.9e+02 Score=31.34 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=57.7
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006649 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (637)
Q Consensus 32 ~girVLIVDD----D~~~re~Lk~lL~~~g-y~V~--~asng~EALelLre~~~~pDLVIlDI~MPd------------m 92 (637)
.+.+++++|- .....+.++.+-+... ..|. .+.+.+.|..+++. ..|.|.+.+ -|+ .
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 4567777763 2334444444443321 3332 46677777776653 378887632 111 1
Q ss_pred CHHHHHHHH---hccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 93 DGlELLe~I---r~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.-+.++..+ ....++|||.--+-.+...+.+|+.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 123333333 223468988766777888999999999998655
No 226
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=47.60 E-value=1.8e+02 Score=29.85 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCC----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc-CCCeEEe------
Q 006649 67 AVALDILRERKGCFD-VVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI------ 134 (637)
Q Consensus 67 ~EALelLre~~~~pD-LVIlDI~M----PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~-GA~DYLl------ 134 (637)
.+..+.+.+.. ++ ++++|+.- .+. -+++++++++..++|||.--+-.+.+.+.++++. |++..+.
T Consensus 156 ~~~~~~~~~~g--~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELG--AGEILLTSMDRDGTKNGY-DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcC--CCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 34444444432 55 67767542 222 2677888876678999998888899999999975 9987665
Q ss_pred CCCCHHHHHHHHH
Q 006649 135 KPIREEELKNIWQ 147 (637)
Q Consensus 135 KPis~eEL~~~Lq 147 (637)
.-++.++++..++
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T PRK02083 233 GEITIGELKAYLA 245 (253)
T ss_pred CCCCHHHHHHHHH
Confidence 3456666655543
No 227
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.46 E-value=1.8e+02 Score=32.90 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=62.0
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCC--------------C
Q 006649 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHM--------------P 90 (637)
Q Consensus 32 ~girVLIVDD----D~~~re~Lk~lL~~~-gy~--V~~asng~EALelLre~~~~pDLVIlDI~M--------------P 90 (637)
.|..|+++|- .....+.++.+=+.+ ... +.-+.+.++|..+++.. .|.|..-+.- |
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG---aD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG---ADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC---CCEEEECCCCCcCCcceeecCCCCC
Confidence 5677888874 233333343433332 222 33577888888887643 7988754311 2
Q ss_pred CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 91 dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..+-+..+.++.....+|||.=.+......+.+|+.+||+....
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 22222233333334578999888888999999999999998765
No 228
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=47.34 E-value=77 Score=33.43 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH-H---HHHHHHHHcCCCceEEEEeC
Q 006649 31 PAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA-A---VALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 31 p~girVLIVDDD~~---~re~Lk~lL~~~gy~V~~as---ng-~---EALelLre~~~~pDLVIlDI 87 (637)
..+.+|++||-|.. ..+.++.+.+..+..+.... +. . ++++.+... .+|+||+|.
T Consensus 98 ~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT 162 (272)
T TIGR00064 98 KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDT 162 (272)
T ss_pred hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 35789999998853 23445555555565544332 22 2 333333333 499999998
No 229
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=46.92 E-value=1.7e+02 Score=29.80 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=60.9
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeC------CCCCCCHHHHHHH
Q 006649 32 AGLRVLVVDDD----ITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDV------HMPDMDGFKLLEH 100 (637)
Q Consensus 32 ~girVLIVDDD----~~~re~Lk~lL~~~g-y~V~~asng~EALelLre~~~~pDLVIlDI------~MPdmDGlELLe~ 100 (637)
.|-.|+-+|-- |..++.+-..++..+ .-...|++.+|++...+.. +|+|=+-+ ...+..-++|+++
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G---~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELG---FDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT----SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcC---CCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 45567777743 222333333344433 2334788999999887643 89887654 1112346899999
Q ss_pred HhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 101 Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
+... .+|||.=-...+.+.+.+|+++||...+.=
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 9754 889887777889999999999999987653
No 230
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=46.87 E-value=1.6e+02 Score=33.76 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEC------CHHHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 006649 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 42 D~~~re~Lk~lL~~~g-y~V~~as------ng~EALelLre~~~~pDLVIlDI~MPdmD-GlELLe~Ir~-~~~IPVIIL 112 (637)
.|.-+..|...|+..| ++|.... +.++..+.+++.. ||+|.+-...+... ..++++.+|+ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~--pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHC--PDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcC--cCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4677888999998888 5776543 2234455566555 99999977655543 4567777764 467766653
Q ss_pred eccCCHHHHHHHHH-cCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIR-HGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 113 Sa~~d~e~a~kAl~-~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
-.+... ...+.+. ....||+..=-..+.+.+.++.+..
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 333332 2234453 4567899987777777777776543
No 231
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=46.10 E-value=23 Score=35.36 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=36.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
|||||.+-.+-..|...|++.++++......+..++.+.... ||.||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMK--PDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCC--CCEEEE
Confidence 899999999999999999998888877665533344444333 888776
No 232
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=45.98 E-value=1.1e+02 Score=31.26 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+..+..+.+.... ..+|++|+.--++ .| +++++++.+...+|||.--+-.+.+.+.++.+.||+..+.
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3444555554433 4799999976543 33 7888998776789999888888999999999999998765
No 233
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=45.38 E-value=1.9e+02 Score=28.29 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=39.0
Q ss_pred CHHHHHHHHhccCCCcE-EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006649 93 DGFKLLEHIGLEMDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (637)
Q Consensus 93 DGlELLe~Ir~~~~IPV-IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq 147 (637)
-|++.+++|++....|+ +.+..++..+++..+.+.|++..++-....++....++
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~ 98 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQ 98 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHH
Confidence 58899999986566676 32555667788889999999987776554555544443
No 234
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.31 E-value=1.7e+02 Score=31.43 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=55.0
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 006649 36 VLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~----~g--y~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~I 107 (637)
|||=|.|-...-.+.+.+.. .+ ..| .++.+.+++.+.+.. .+|+|.+|-.-|+ +--+.++.++. .+++
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~e-~l~~av~~~~~~~~~i 244 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPVD-LMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHHhcCCCe
Confidence 66666664444344554432 23 223 478899999998864 3899999933221 11222333332 3444
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
+ |..++--+.+.+.+....|++..
T Consensus 245 ~-leAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 245 K-IEASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEE
Confidence 4 55666677888888889998754
No 235
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=45.17 E-value=3.1e+02 Score=28.14 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=62.6
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 33 GLRVLVVDDDI---TCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 33 girVLIVDDD~---~~re~Lk~lL~~~gy--~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
.++++|+.+.+ ...+.+...+...+. .|......++..+.+.. .|++|+=..-++.-|.-+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 45666665432 233334444444332 34444443444444432 57776643234445667777764 467
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|||.. .... ..+.+..+..+++..|-+.++|.+++..++.
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 88753 3222 3455677778999999999999999865543
No 236
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=44.25 E-value=70 Score=31.63 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=57.5
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 36 VLVVDDDITCLRILEQMLRR----C--LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~----~--gy-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
|||=|.+..+.-.+.+.++. . .. ...++.+.+++.+.++.. +|+|.+|-.-|+ +--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g---~d~I~lD~~~~~-~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAG---ADIIMLDNMSPE-DLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT----SEEEEES-CHH-HHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhC---CCEEEecCcCHH-HHHHHHHHHhhcCCcE
Confidence 56666655544445555443 2 22 335788999999988753 899999986552 2233444444433346
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeE
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DY 132 (637)
.|..|+--+.+.+.+-.+.|++.+
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~i 152 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVI 152 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 777888888888888889997654
No 237
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=43.67 E-value=18 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=20.1
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
|+.+... |++..+||.++|.+ .+.++++.|++
T Consensus 10 ii~l~~~-G~s~~~ia~~lgvs-~~Tv~~w~kr~ 41 (50)
T PF13384_consen 10 IIRLLRE-GWSIREIAKRLGVS-RSTVYRWIKRY 41 (50)
T ss_dssp HHHHHHH-T--HHHHHHHHTS--HHHHHHHHT--
T ss_pred HHHHHHC-CCCHHHHHHHHCcC-HHHHHHHHHHc
Confidence 4444444 99999999999954 46677777776
No 238
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=43.61 E-value=1.6e+02 Score=28.80 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=48.2
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCe
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPd--------mDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~D 131 (637)
..+.+.+++.+..+ . .+|.|.++-..|. ..|++.++.+... +++||+.+-+- +.+.+.++++.|+++
T Consensus 101 ~s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 35667777766443 2 3899987654442 2378888888643 46898877665 577888899999987
Q ss_pred EEe
Q 006649 132 YLI 134 (637)
Q Consensus 132 YLl 134 (637)
...
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 643
No 239
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.60 E-value=1.4e+02 Score=29.22 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=52.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~--gy~V~~as-------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
.+.+|.++-..+...+.+.+.|+.. +..+.-+. +..+.++.+.+.. ||+|++-+-+|... .++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG--ADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999988888875 34443211 1223466777665 99999999999854 3444554
Q ss_pred ccCCCcEEEE
Q 006649 103 LEMDLPVIMM 112 (637)
Q Consensus 103 ~~~~IPVIIL 112 (637)
...+.+|++-
T Consensus 121 ~~l~~~v~~~ 130 (171)
T cd06533 121 DRLPVPVAIG 130 (171)
T ss_pred HHCCCCEEEE
Confidence 4445555543
No 240
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=43.43 E-value=2.1e+02 Score=29.81 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=43.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.|++++=.. .+.-|+-+++.+. ..+|||. |... ...+.+..|..+|+.+|-+.+++.+.+..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~-s~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVA-SNAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEE-eCCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466665432 2334666666653 4678776 3222 24556778889999999999999998887764
No 241
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.83 E-value=1.2e+02 Score=30.78 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=51.5
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 63 asng~EALelLre~~~~pD-LVIlDI~MPd---mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..+..+..+.+.+.. .| |+++|+.--+ ..-+++++++++...+||++--+-.+.+.+.+.+..|++..++
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 346777777776653 55 8888887422 1236778888776779999988889999999999999776544
No 242
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.50 E-value=1.8e+02 Score=31.11 Aligned_cols=90 Identities=10% Similarity=0.197 Sum_probs=56.3
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-h---cc
Q 006649 36 VLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-G---LE 104 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~----~gy---~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I-r---~~ 104 (637)
|||=|.|..+...+...++. ..+ ....+.+.++|++.++.. +|+|.+|=. + ++.++++ + ..
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~G---aDiI~LDn~----~-~e~l~~~v~~~~~~ 226 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAG---ADIVMCDNM----S-VEEIKEVVAYRNAN 226 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcC---CCEEEECCC----C-HHHHHHHHHHhhcc
Confidence 55555554444445555432 232 335789999999998643 899998753 2 3333332 2 11
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 105 MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 105 ~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
..-..|..++.-+.+.+.+..+.|++-..
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 12225667877899999999999997543
No 243
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=42.38 E-value=3 Score=41.51 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=71.0
Q ss_pred EEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006649 37 LVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (637)
Q Consensus 37 LIVDDD~~~re~Lk~lL~~~gy----~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~IPV 109 (637)
+.+||+...+..+..++....+ .........+....... ..+|+++.++.||++++++++.++.. ..++++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--ccccccccccccccccccccccccccCCCCCCCCc
Confidence 7777777666665555554311 11112211110000000 34899999999999999999888753 245566
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
+++............+..++.+|+.||....++...+.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 137 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVR 137 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcccCCcccc
Confidence 66666666655677788889999999998666666665543
No 244
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=42.27 E-value=1.5e+02 Score=31.52 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=53.5
Q ss_pred hCCCeEEEECCHH-----HH---H-HHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHH
Q 006649 55 RCLYNVTTCSQAA-----VA---L-DILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI 125 (637)
Q Consensus 55 ~~gy~V~~asng~-----EA---L-elLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl 125 (637)
+.+..+..+++|. ++ . .++++.. ||++|.=---|..-|-.-.+++-...++|.|++|-..... ..+++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~~d~l 105 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK-VKDAM 105 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc-hHHHH
Confidence 3467777777662 22 2 2445655 9998885544455566666666555788999998665554 34788
Q ss_pred HcCCCeEEeCCCC
Q 006649 126 RHGACDYLIKPIR 138 (637)
Q Consensus 126 ~~GA~DYLlKPis 138 (637)
+..-.+||+-+.+
T Consensus 106 ~~~g~GYIivk~D 118 (277)
T PRK00994 106 EEQGLGYIIVKAD 118 (277)
T ss_pred HhcCCcEEEEecC
Confidence 8888889876654
No 245
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=42.09 E-value=3.5e+02 Score=28.33 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=60.2
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC--CHHHHHHHHHHcCCCceEEEEeCCCCCC---------CHHHHH
Q 006649 32 AGLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS--QAAVALDILRERKGCFDVVLSDVHMPDM---------DGFKLL 98 (637)
Q Consensus 32 ~girVLIVDDD~-~~re~Lk~lL~~~gy~V~-~as--ng~EALelLre~~~~pDLVIlDI~MPdm---------DGlELL 98 (637)
.|..-+|+=|.+ .....+...++..+.... .+. +..+-++.+.+....+..++. . + +. +-.+.+
T Consensus 114 aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i 190 (256)
T TIGR00262 114 VGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELV 190 (256)
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHH
Confidence 455555555554 334445555566665432 222 223444445444433555554 2 2 22 235667
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 99 e~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
+++|+..+.||++=.+-.+.+.+.++.++||+..+.-.
T Consensus 191 ~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 191 KRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 77776667787765556678999999999999998864
No 246
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=42.02 E-value=32 Score=33.91 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=45.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC-CC-CCCCH--HHHHHHHhccCCCcEEE
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV-HM-PDMDG--FKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI-~M-PdmDG--lELLe~Ir~~~~IPVII 111 (637)
|||||..-.+-..|..+|...+++|....+...-++.++... ||.||+-= -| |..++ .++++.+ ..++||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLA--PSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 899999999999999999998888877665432233344433 78777632 11 11222 2334333 24678775
Q ss_pred E
Q 006649 112 M 112 (637)
Q Consensus 112 L 112 (637)
+
T Consensus 78 I 78 (191)
T PRK06774 78 V 78 (191)
T ss_pred E
Confidence 4
No 247
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=41.99 E-value=83 Score=33.00 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=49.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH----------
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFK---------- 96 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~as-------ng~EALelLre~~~~pDLVIlDI~MPdmDGlE---------- 96 (637)
|||||+-..-.+-..|.+.|...+++|.... +.++..+.++... ||+||-=.-+...+..|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999998888877653 5556666777666 99987654433222211
Q ss_pred -----HHHHHhccCCCcEEEEecc
Q 006649 97 -----LLEHIGLEMDLPVIMMSAD 115 (637)
Q Consensus 97 -----LLe~Ir~~~~IPVIILSa~ 115 (637)
.+.++.....+++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 1111112467899999875
No 248
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.82 E-value=26 Score=37.04 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=34.6
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 33 girVLIVDDD~~~---re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
+.+|.+|+-|+.- .+.+..+-+..+..+..+.+..+..+.++... .+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 3789999887632 33344433334566666777766666666543 489999995
No 249
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=41.37 E-value=3.2e+02 Score=27.59 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=56.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHHcCCCceEEEEeCC-CCC-CCHHHHHHHHhccCC
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVH-MPD-MDGFKLLEHIGLEMD 106 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~as-------ng~EALelLre~~~~pDLVIlDI~-MPd-mDGlELLe~Ir~~~~ 106 (637)
|||=|-|...++.++..-...+-+|...+ ++++.++++.+.++.|=+|..|-. ..+ .-|=+.++.+...++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 45558888888888888888888887544 678999999988877778877753 233 457778888877777
Q ss_pred CcEE
Q 006649 107 LPVI 110 (637)
Q Consensus 107 IPVI 110 (637)
+-|+
T Consensus 83 IeVL 86 (180)
T PF14097_consen 83 IEVL 86 (180)
T ss_pred ceEE
Confidence 7654
No 250
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=41.28 E-value=2.2e+02 Score=32.96 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=45.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng-~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~IPV 109 (637)
.++.|++||.|+...+.++ +.++.+...+-. .+.++...-. +.|.+++-+.-.+. -..++..++ ..++.+|
T Consensus 439 ~g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i~--~a~~viv~~~~~~~-~~~iv~~~~~~~~~~~i 511 (558)
T PRK10669 439 AGIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHLD--CARWLLLTIPNGYE-AGEIVASAREKRPDIEI 511 (558)
T ss_pred CCCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCcc--ccCEEEEEcCChHH-HHHHHHHHHHHCCCCeE
Confidence 3566777777765544443 235554332211 2344433322 36766665432221 122334444 3456777
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEE
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYL 133 (637)
|.-.. +.+......+.||+..+
T Consensus 512 iar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 512 IARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred EEEEC--CHHHHHHHHHcCCCEEE
Confidence 76553 33444555678877444
No 251
>PRK07695 transcriptional regulator TenI; Provisional
Probab=41.21 E-value=2.4e+02 Score=27.91 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPd-------mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
++.+.+++.+..+ . ..|.|++.-..|. ..|++.++.+....++||+.+-+- +.+.+.+++..|++..
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5667777655443 2 3899887643221 236788888876667999988776 7788999999998876
No 252
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.01 E-value=1.2e+02 Score=30.22 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=45.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe--CCCCHHHHHHHHHHH
Q 006649 83 VLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (637)
Q Consensus 83 VIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl--KPis~eEL~~~Lq~V 149 (637)
-++|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..++++..++.+
T Consensus 49 ~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 49 SVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 3444443334567888888776789999765555666788999999999873 234446666665554
No 253
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=40.95 E-value=2e+02 Score=31.15 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=52.4
Q ss_pred HHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeC-----CCC-CC-CHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 006649 52 MLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDV-----HMP-DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 52 lL~~~gy~-V~~asng~EALelLre~~~~pDLVIlDI-----~MP-dm-DGlELLe~Ir~~~~IPVIILSa~~d~e~a~k 123 (637)
.+...+.. +..+++.++|...++.. +|.|++-= |.. +. +-+.|+.+++...++|||.--+-.+...+..
T Consensus 131 ~l~~~gi~v~~~v~s~~~A~~a~~~G---~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaa 207 (330)
T PF03060_consen 131 RLHAAGIKVIPQVTSVREARKAAKAG---ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAA 207 (330)
T ss_dssp HHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHH
T ss_pred HHHHcCCccccccCCHHHHHHhhhcC---CCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHH
Confidence 34444544 45899999998877643 89988752 122 22 3577778887767799999888889999999
Q ss_pred HHHcCCCeEEe
Q 006649 124 GIRHGACDYLI 134 (637)
Q Consensus 124 Al~~GA~DYLl 134 (637)
++.+||++...
T Consensus 208 al~lGA~gV~~ 218 (330)
T PF03060_consen 208 ALALGADGVQM 218 (330)
T ss_dssp HHHCT-SEEEE
T ss_pred HHHcCCCEeec
Confidence 99999998765
No 254
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=40.89 E-value=1.8e+02 Score=30.84 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=43.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
.|++++=-.. +.=|+-+++.+. ..+|||..-.... ..+.+..|.++++..|-+.++|.+++..++...
T Consensus 258 ~d~~v~~s~~-Egf~~~~lEAma--~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 258 VSALLLTSKF-EGFPMTLLEAMS--YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CcEEEECCcc-cCcChHHHHHHH--cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 3655542221 222566666664 4678874220222 345677889999999999999999999876543
No 255
>KOG4216 consensus Steroid hormone nuclear receptor [Transcription]
Probab=40.58 E-value=53 Score=36.80 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=30.8
Q ss_pred ceeccccCCCCCCCCCCcchhHHHHHHHHHHHhhhh
Q 006649 408 LGAVASTSNLGGLNPQNGNMLMDILHQQQQKQQNQQ 443 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (637)
+||-+.++-.|+|+-.----|-+++|.+++++|+|+
T Consensus 112 LGMSRDAVKFGRMSKKQRdsl~aEVq~h~~q~q~q~ 147 (479)
T KOG4216|consen 112 LGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQQD 147 (479)
T ss_pred hccchhhHHhccccHhhHHHHHHHHHHHHHHHHhhh
Confidence 799999999999998888889999998887775543
No 256
>PLN02591 tryptophan synthase
Probab=40.45 E-value=3.3e+02 Score=28.62 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=62.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE-EE-CCH-HHHHHHHHHcCCCceEEEEeCCCCCC---------CHHHHHHHHhc
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVT-TC-SQA-AVALDILRERKGCFDVVLSDVHMPDM---------DGFKLLEHIGL 103 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~-~a-sng-~EALelLre~~~~pDLVIlDI~MPdm---------DGlELLe~Ir~ 103 (637)
|+|.|-.....+.+...++..+.... .+ .+. ++=++.+.+.. .+.|-+ +.+.+. +-.++++++|+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~-Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYL-VSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEE-eeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 56666666666677777777776543 22 222 33445555444 444432 111111 23455777877
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 104 ~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
..++||++=.+-.+.+.+.+..++||++.+.-.
T Consensus 187 ~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 778999987777889999999999999998865
No 257
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=40.28 E-value=3.9e+02 Score=28.03 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=40.4
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE------EeCCCCHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY------LlKPis~eEL~~~Lq~Vlr 151 (637)
+++++++++..++|||...+-.+.+.+.+++..||+.. +.-|.-..++++-+.+.++
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHH
Confidence 57778887666899999888889999999999998653 2345444445444444443
No 258
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.25 E-value=1.1e+02 Score=31.70 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=36.8
Q ss_pred HHHHHHhccCCCcEEEEe-----ccCCHHHHHHHHHcCCCeEEeC--CCC-HHHHHHHHHHH
Q 006649 96 KLLEHIGLEMDLPVIMMS-----ADGRVSAVMRGIRHGACDYLIK--PIR-EEELKNIWQHV 149 (637)
Q Consensus 96 ELLe~Ir~~~~IPVIILS-----a~~d~e~a~kAl~~GA~DYLlK--Pis-~eEL~~~Lq~V 149 (637)
++++.++...++|+++|+ .++-..++.++.+.|++..+.- |+. .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 567777766788987664 3344455888999999999886 343 46666655554
No 259
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.17 E-value=83 Score=32.59 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=35.0
Q ss_pred CCCcEEEEec------cCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006649 105 MDLPVIMMSA------DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (637)
Q Consensus 105 ~~IPVIILSa------~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~ 148 (637)
-.+|||+|+= +.+..++..|-+.||.+||.-.+.+||-...-+.
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne 143 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNE 143 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHH
Confidence 3579998874 4567889999999999999999998887654433
No 260
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=39.86 E-value=2.1e+02 Score=32.01 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=64.0
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEE-----------------------CCHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 006649 40 DDDITCLRILEQMLRRCLYN----VTTC-----------------------SQAAVALDILRERKGCFDVVLSDVHMPDM 92 (637)
Q Consensus 40 DDD~~~re~Lk~lL~~~gy~----V~~a-----------------------sng~EALelLre~~~~pDLVIlDI~MPdm 92 (637)
+++....+.+++.++..+|. +..+ -+.++++++++.....++++.+.==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777778888888766442 3222 23478888776533337887777666654
Q ss_pred CHHHHHHHHhccC--CCcEEEEecc---CCHHHHHHHHHcCCCeE-EeCCCCHHHHHHHHH
Q 006649 93 DGFKLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIREEELKNIWQ 147 (637)
Q Consensus 93 DGlELLe~Ir~~~--~IPVIILSa~---~d~e~a~kAl~~GA~DY-LlKPis~eEL~~~Lq 147 (637)
| ++-.++|+... .+|| +... .+.....++++.|++++ ++||-..-=|-.+++
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 4 55556665443 4454 3332 35778888999888765 678876444443333
No 261
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=39.80 E-value=80 Score=32.06 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=44.7
Q ss_pred EEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 60 VTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 60 V~~asng~EALelLre~-~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
|....+.+++++.++.. ...+. ++.+.|-.-+.+++++.+++. +++ +|-.-.--+.+.+.+|+++||. |++-|.
T Consensus 13 Vir~~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~ 88 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPG 88 (196)
T ss_dssp EETTSSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-S-EEEESS
T ss_pred EEEcCCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCC-EEECCC
Confidence 33444555555544421 11233 456666666789999988644 443 4545556788999999999997 555565
Q ss_pred CHHHHH
Q 006649 138 REEELK 143 (637)
Q Consensus 138 s~eEL~ 143 (637)
-.+++.
T Consensus 89 ~~~~v~ 94 (196)
T PF01081_consen 89 FDPEVI 94 (196)
T ss_dssp --HHHH
T ss_pred CCHHHH
Confidence 444443
No 262
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=39.61 E-value=86 Score=34.26 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC---eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006649 35 RVLVVDDDITCLRILEQMLRRC--LY---NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~--gy---~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~ 100 (637)
.|+++|-|..+.+.=+.++... +| +| ....+|-..++.+.++. +|+||+|+.=|.+.+..+-++
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~--~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP--FDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC--ceEEEEecCCccchHHHHHHH
Confidence 4788887777777766666542 33 23 34558888888776554 999999999999988776544
No 263
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=39.36 E-value=34 Score=37.48 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHhc---CCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 249 RILELMN---VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 249 kILeLL~---v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+++++|. ..-++++++|.++|-+ ...|-+.||+++|+||.
T Consensus 224 ~~i~~me~nle~plsl~~LA~~~~~S-~R~leRlF~~~lG~sP~ 266 (328)
T COG4977 224 RAIELMEANLEEPLSLEELADRAGLS-RRQLERLFRAELGVSPA 266 (328)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHhCCC-HHHHHHHHHHHhCCCHH
Confidence 3445553 4678999999999965 57799999999999984
No 264
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.70 E-value=1.1e+02 Score=33.00 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=30.7
Q ss_pred CCccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEeC
Q 006649 31 PAGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 31 p~girVLIVDDD~~~r---e~Lk~lL~~~gy~V~~as---ng----~EALelLre~~~~pDLVIlDI 87 (637)
+.+.+|+|++-|..-. +.++..-...+..+.... +. .+++...... .+|+||+|.
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~--~~D~ViIDT 204 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKAR--GIDVLIIDT 204 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 4678999999886332 233333344455544332 21 2333333333 499999998
No 265
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.67 E-value=2.9e+02 Score=33.01 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=42.6
Q ss_pred CceEEEEe-CCCCCCCHHH-HHHHHhccC-CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 79 CFDVVLSD-VHMPDMDGFK-LLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 79 ~pDLVIlD-I~MPdmDGlE-LLe~Ir~~~-~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.+.|||+| +++-..+..+ |++.|.+-. .+.+|++|. +...+...+..-+..|-.+|++.+++...+++++.+
T Consensus 119 ~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt--~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 119 RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT--EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred CceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC--ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 36788888 4433323333 444444322 233444443 333444456655667889999999999988887654
No 266
>PRK14098 glycogen synthase; Provisional
Probab=38.48 E-value=2.5e+02 Score=32.06 Aligned_cols=112 Identities=9% Similarity=0.092 Sum_probs=60.0
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 33 GLRVLVVDD-DITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 33 girVLIVDD-D~~~re~Lk~lL~~~gy~V~~a--sng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
+++++|+.+ +....+.|+++.....-.|... -+..++.+.+.. -|+.++=-. .+.-|+..++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CCCchHHHHHHHh--CCCCe
Confidence 466777754 3334556666655443233322 233333333322 577775321 2334666666554 34555
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|+...-.-.+.+.+....+..+|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 543322222222222234678899999999999999988764
No 267
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=37.78 E-value=2.2e+02 Score=33.19 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=59.1
Q ss_pred cEEEEE--eCCHHHHHHHHHHHHh----CCCeEEEECCHHHHHH----------------HHHHcCCCceEEEEeCCCCC
Q 006649 34 LRVLVV--DDDITCLRILEQMLRR----CLYNVTTCSQAAVALD----------------ILRERKGCFDVVLSDVHMPD 91 (637)
Q Consensus 34 irVLIV--DDD~~~re~Lk~lL~~----~gy~V~~asng~EALe----------------lLre~~~~pDLVIlDI~MPd 91 (637)
-+|+|| -+.+...+.+.++..| .++.|.........+. .+......+|+||+ -+
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iG 270 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LG 270 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----EC
Confidence 367777 4556666655555543 4566655332222110 00001113677776 35
Q ss_pred CCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 92 MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 92 mDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
.||- +|+..+. ...+||+-+ ..|-.+||. +++++++...+.+++++.+
T Consensus 271 GDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 271 GDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGPI 320 (508)
T ss_pred CcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCCc
Confidence 6773 4444442 345787643 467788975 7899999999999887654
No 268
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.73 E-value=2.5e+02 Score=31.39 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=50.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC-CCCCCHH--HHHHHHhc-c-C
Q 006649 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-MPDMDGF--KLLEHIGL-E-M 105 (637)
Q Consensus 34 irVLIVDDD~~---~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~-MPdmDGl--ELLe~Ir~-~-~ 105 (637)
.+|.+|..|.. ..+.|+.+-+..+..+..+.+..+....+.... ..|+||+|.- +...|.. +.+..+.. . +
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47888876664 345566666666777777776666555555443 4799999972 3323332 23333321 1 2
Q ss_pred CCcEEEEeccCCHHHH
Q 006649 106 DLPVIMMSADGRVSAV 121 (637)
Q Consensus 106 ~IPVIILSa~~d~e~a 121 (637)
.-.++++++....+..
T Consensus 247 ~~~lLVLsAts~~~~l 262 (374)
T PRK14722 247 VQRLLLLNATSHGDTL 262 (374)
T ss_pred CeEEEEecCccChHHH
Confidence 2336777776655443
No 269
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.67 E-value=3.5e+02 Score=27.84 Aligned_cols=89 Identities=6% Similarity=-0.029 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCC------CHHHHHHHHhccC-CCcEEEEec
Q 006649 45 CLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLEM-DLPVIMMSA 114 (637)
Q Consensus 45 ~re~Lk~lL~~~gy~V~~asng---~EALelLre~~~~pDLVIlDI~MPdm------DGlELLe~Ir~~~-~IPVIILSa 114 (637)
..+.+...+++.+..+..+-+. .+.++.+.... ..++++ -.+|+. +-.+.++++|+.. +.||++=.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 3445556666667665433322 34444444433 577777 445552 1234556665433 467655445
Q ss_pred cCCHHHHHHHHHcCCCeEEeCC
Q 006649 115 DGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 115 ~~d~e~a~kAl~~GA~DYLlKP 136 (637)
-.+.+.+.++.+.||+.++.--
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 5578888888999999998764
No 270
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.50 E-value=91 Score=33.00 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=39.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--c--CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGL--E--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~--~--~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+|+||+ -+.||- +++.++. . .++||+-+- .|-.+||. .++++++...++++++..+
T Consensus 36 ~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 36 PDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCCc
Confidence 798887 356773 4454442 2 477877543 57788999 6889999999999887654
No 271
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=37.37 E-value=2.6e+02 Score=30.39 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=55.3
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 36 VLVVDDDITCLRILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~----~--gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
|||=|.|....-.+...+.+ . .....++.+.+++.+.++.. +|+|.+|-.-|+ ++.+.++....-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~g---aDiI~LDn~s~e----~~~~av~~~~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKAG---ADIIMLDNFTTE----QMREAVKRTNGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcC---CCEEEeCCCChH----HHHHHHHhhcCCeE
Confidence 55555554444344444432 2 12345889999999998743 799999975552 22222332222235
Q ss_pred EEEeccCCHHHHHHHHHcCCCe
Q 006649 110 IMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~D 131 (637)
|..|+--+.+.+.+-.+.|++-
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~ 276 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDF 276 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCE
Confidence 6677778888888888899864
No 272
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.11 E-value=1e+02 Score=30.18 Aligned_cols=67 Identities=10% Similarity=0.042 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCC-------HHHHHHHHhcc-----CCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPdmD-------GlELLe~Ir~~-----~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
+..+.++.+... +|.|+++-.-|+.+ +++.++++++. +.+||++..+- ..+.+.++++.||+.+
T Consensus 115 t~~e~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI-~~env~~l~~~gad~i 190 (210)
T TIGR01163 115 TPLEFLEYVLPD---VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGV-NDDNARELAEAGADIL 190 (210)
T ss_pred CCHHHHHHHHhh---CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCc-CHHHHHHHHHcCCCEE
Confidence 345555544322 67777765444433 33444444321 23565444443 4678888899999977
Q ss_pred EeC
Q 006649 133 LIK 135 (637)
Q Consensus 133 LlK 135 (637)
+.-
T Consensus 191 ivg 193 (210)
T TIGR01163 191 VAG 193 (210)
T ss_pred EEC
Confidence 654
No 273
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=37.00 E-value=5.1e+02 Score=29.00 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=47.4
Q ss_pred ceEEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE-----EeCCCCHHHHHHHHHHHH
Q 006649 80 FDVVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY-----LIKPIREEELKNIWQHVV 150 (637)
Q Consensus 80 pDLVIlDI~----MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY-----LlKPis~eEL~~~Lq~Vl 150 (637)
.|.|.+..- .....+++.+++++...++||++..+- ..+.+.+++..||+.+ |.+.-++.+..+.+++.+
T Consensus 132 aD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i 210 (430)
T PRK07028 132 VDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAI 210 (430)
T ss_pred CCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHH
Confidence 788876531 112467888888876566888776655 5678889999999864 455555555555555544
Q ss_pred HH
Q 006649 151 RK 152 (637)
Q Consensus 151 rk 152 (637)
++
T Consensus 211 ~~ 212 (430)
T PRK07028 211 DS 212 (430)
T ss_pred hc
Confidence 33
No 274
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=36.82 E-value=2.6e+02 Score=30.64 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006649 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (637)
Q Consensus 34 irVLIVDDD~~~r-----e~Lk~lL~~~gy~V~~asn---------g~EALelLre~~~~pDLVIlDI~MPdmDGlELLe 99 (637)
-|+|||-|..... +.+...|+..++++..+.. .+++.+.+++.. +|+||- ..+..-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4899998876544 5677778776766655432 457777777765 899886 45666666666
Q ss_pred HH
Q 006649 100 HI 101 (637)
Q Consensus 100 ~I 101 (637)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 54
No 275
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=36.59 E-value=1.8e+02 Score=29.53 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc-CCCeEEe
Q 006649 68 VALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI 134 (637)
Q Consensus 68 EALelLre~~~~pD-LVIlDI~----MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~-GA~DYLl 134 (637)
+..+.+.+.. .| ++++++. +++ -.++++++++...++|||..-+-.+.+.+.++++. |++..+.
T Consensus 153 ~~~~~l~~~G--~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEELG--AGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHCC--CCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3334444433 77 6665654 222 23678888876678999988888899999999987 8877654
No 276
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=36.52 E-value=4.2e+02 Score=27.43 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=58.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECC--HHHHHHHHHHcCCCceEEEEeCCC-C----CCCHHHHHHHHhc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQ--AAVALDILRERKGCFDVVLSDVHM-P----DMDGFKLLEHIGL 103 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~~asn--g~EALelLre~~~~pDLVIlDI~M-P----dmDGlELLe~Ir~ 103 (637)
.++++||-+.+. .+.++.+....+ ..|..... .++..+.+.. .|++++=... + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 356666665442 233444444422 23333222 2344444432 4666553221 1 112566667664
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 104 ~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
..+|||.- .... ..+.+..|..+++..|-+.++|.+++.+++.
T Consensus 293 -~G~PvI~s-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 -SGVPVVAT-RHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred -cCCCEEEe-CCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 46788753 2222 3345566778899999999999999988764
No 277
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=36.47 E-value=4.5e+02 Score=27.40 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=61.6
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEE-----EC--CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhccC-C
Q 006649 37 LVVDDDITCLRILEQMLRRCLYNVTT-----CS--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEM-D 106 (637)
Q Consensus 37 LIVDDD~~~re~Lk~lL~~~gy~V~~-----as--ng~EALelLre~~~~pDLVIlDI~MPdm--DGlELLe~Ir~~~-~ 106 (637)
.+..|.....+.++.+- ..+..|.. .. +..+..+.+++. ..|.|.+|...++. --++.++++++.. +
T Consensus 115 ~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ 191 (231)
T TIGR00736 115 ELLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFND 191 (231)
T ss_pred hhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCC
Confidence 34555555555555555 33433321 11 222444445444 38999999777763 2478888887764 5
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+|||.--.-.+.+.+.+.++.||+...+
T Consensus 192 ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 192 KIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 9999888888899999999999987643
No 278
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=36.46 E-value=1.2e+02 Score=29.64 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=34.1
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 80 pDLVIlDI~MPdmDG-------lELLe~Ir~~-----~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+|.|+++-..|+.+| ++.++++++. ++.|+++.-+-. .+.+.++++.||+.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 688877765555433 3444444322 246766555444 58888999999998765
No 279
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.41 E-value=90 Score=38.75 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=50.2
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhccCC--CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMD--LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 79 ~pDLVIlD-I~MPdmDGlELLe~Ir~~~~--IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.+-|+|+| ++|-..+.++.+.++-+++. +.+|+. ..+...+...+...+.-|-.||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE--CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 37899998 66665566665444333433 444444 44455567777778888999999999999999988765
No 280
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.10 E-value=3.5e+02 Score=27.83 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCC-CC-C-CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 64 SQAAVALDILRERKGCFDVVLSDVH-MP-D-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 64 sng~EALelLre~~~~pDLVIlDI~-MP-d-mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+..+..+.+.+. --.|+++|+. +- + ..-+++++++.+...+||++=-+-.+.+.+.+++..|++..++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 4666666666553 1348888886 32 2 2458889998766788988877788899999999999998765
No 281
>PRK13566 anthranilate synthase; Provisional
Probab=36.06 E-value=83 Score=37.99 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=48.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCCC-CCHHHHHHHHhccCC
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPD-MDGFKLLEHIGLEMD 106 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlD-I-~MPd-mDGlELLe~Ir~~~~ 106 (637)
-..+++|||||....+...|.++|++.+++|..+..... .+.+.... ||.||+- = ..|. .+-.++++.+. ..+
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~~--~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~ 598 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRVN--PDLVVLSPGPGRPSDFDCKATIDAAL-ARN 598 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhcC--CCEEEECCCCCChhhCCcHHHHHHHH-HCC
Confidence 346789999999988899999999999998877665432 12222223 8987762 1 1121 12233444432 246
Q ss_pred CcEEEE
Q 006649 107 LPVIMM 112 (637)
Q Consensus 107 IPVIIL 112 (637)
+||+-+
T Consensus 599 iPILGI 604 (720)
T PRK13566 599 LPIFGV 604 (720)
T ss_pred CcEEEE
Confidence 887654
No 282
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=35.95 E-value=1.6e+02 Score=32.66 Aligned_cols=57 Identities=14% Similarity=-0.029 Sum_probs=41.7
Q ss_pred CceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 79 CFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 79 ~pDLVIlDI~MPdmD-GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
.+|+|++|+--.... -++.+++||....-+.|+--.-.+.+.+..+++.||+...+-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 489999999765543 467888888654334444444678889999999999987543
No 283
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.80 E-value=2.4e+02 Score=28.78 Aligned_cols=80 Identities=10% Similarity=0.188 Sum_probs=46.6
Q ss_pred EECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006649 62 TCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (637)
Q Consensus 62 ~asng~EALelLre~~-~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~e 140 (637)
...+.+++++.++... ..+. ++.+.|-.-+.++.++++++..+--+|-.-.--+.+.+.+|++.||. ||+-|.-..
T Consensus 11 r~~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~ 87 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQ 87 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCH
Confidence 3444555554443211 1133 44555555568888888864432223444455678899999999996 666676555
Q ss_pred HHHH
Q 006649 141 ELKN 144 (637)
Q Consensus 141 EL~~ 144 (637)
++.+
T Consensus 88 ~vi~ 91 (201)
T PRK06015 88 ELLA 91 (201)
T ss_pred HHHH
Confidence 5543
No 284
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=35.27 E-value=2.8e+02 Score=28.15 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=56.5
Q ss_pred HHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc-EEEEeccCCHHHHHHHHHcCC
Q 006649 52 MLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP-VIMMSADGRVSAVMRGIRHGA 129 (637)
Q Consensus 52 lL~~~g-y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP-VIILSa~~d~e~a~kAl~~GA 129 (637)
.|.... .-|....+.+++++.++.... -.+=++.+.+-.-++++.++.+++....+ +|-.-.--+.+.+..|++.||
T Consensus 6 ~l~~~~~~~v~r~~~~~~~~~~~~a~~~-gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 6 PFTKLPLIAILRGITPDEALAHVGALIE-AGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHhCCEEEEEeCCCHHHHHHHHHHHHH-CCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 344433 345566677777776654210 12335666676678899999886544333 333444556788999999999
Q ss_pred CeEEeCCCCHHHHHHH
Q 006649 130 CDYLIKPIREEELKNI 145 (637)
Q Consensus 130 ~DYLlKPis~eEL~~~ 145 (637)
+ |+.-|....++.+.
T Consensus 85 ~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 85 R-LIVTPNTDPEVIRR 99 (206)
T ss_pred C-EEECCCCCHHHHHH
Confidence 5 66667666565543
No 285
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.17 E-value=2.9e+02 Score=28.92 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=58.7
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 34 irVLIVDDD--~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
|++.|+..+ ....+.++..|...++.+....+.. ......|+||+ -+.||- +++.++.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 455666433 3444556666666677665544322 11224788887 366774 44555544 888886
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+. .|-.+||. .+.++++..+++++.+...
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCCc
Confidence 54 35567887 6888999999998876654
No 286
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=35.07 E-value=3e+02 Score=29.52 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=58.6
Q ss_pred EEEEE--eCCHHHHHH---HHHHHHhCCCeEEEECCHHHHHHH-------HHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 35 RVLVV--DDDITCLRI---LEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 35 rVLIV--DDD~~~re~---Lk~lL~~~gy~V~~asng~EALel-------Lre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
+|+|+ .+.+...+. +.+.|+..++++.........+.. .+.....+|+||+ -+.||- +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 47777 344444444 444455557776654332221110 1111123788887 356773 444444
Q ss_pred c--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 103 ~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
. ..++|++-+. .|=.+||. .+..+++...+.++++..+
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 2 3577877543 46668888 7889999999999876654
No 287
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=35.03 E-value=1e+02 Score=33.42 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=45.3
Q ss_pred CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006649 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 93 DGlELLe~Ir~~~~IPVI--ILSa~~d~e~a~kAl~~GA~DYL-----lKPis~eEL~~~Lq~Vlrk 152 (637)
-++++++++++...+||| ...+-.+.+.+.+++++||+..+ .|.-++.+..+.+.+++..
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478889988776779998 56666689999999999999874 4444777766666665543
No 288
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.91 E-value=1.3e+02 Score=33.02 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmD-GlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
+++.++++.. -.+|+|.+|+-.+..+ -.+++++|+.. ++++||. -.-.+.+.+..+++.||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 4444555431 0259999999887754 55688888755 4566554 223478889999999998754
No 289
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.54 E-value=2.5e+02 Score=27.42 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=52.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQ-------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~--gy~V~~asn-------g~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
.+.+|.++-..+...+.+...|... +..+.-+.+ .++.++.+.... ||+|++-+-+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG--PDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999999888875 344443222 345566666655 99999999999754 3455555
Q ss_pred ccCCCcEEE
Q 006649 103 LEMDLPVIM 111 (637)
Q Consensus 103 ~~~~IPVII 111 (637)
..-..++++
T Consensus 123 ~~l~~~v~i 131 (172)
T PF03808_consen 123 QRLPAGVII 131 (172)
T ss_pred HHCCCCEEE
Confidence 444555443
No 290
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=34.46 E-value=1.9e+02 Score=30.13 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCC-C--HHHHHHHHhccCCCcEEEEeccCCHHHHHHHH-HcCCCeEEe
Q 006649 66 AAVALDILRERKGCFDVVLSDVHMPDM-D--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (637)
Q Consensus 66 g~EALelLre~~~~pDLVIlDI~MPdm-D--GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl-~~GA~DYLl 134 (637)
..+..+.+.+.. .-.++++|+.--++ . -+++++++++...+|||.--+-.+.+.+.+++ +.|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 445556665443 13588888854332 2 35778888777789999988889999999998 789887543
No 291
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.44 E-value=3.9e+02 Score=29.02 Aligned_cols=90 Identities=14% Similarity=0.028 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----C-C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 35 RVLVVDDDITCLRILEQMLRRC----L-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~----g-y-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
-|||=|.|-...-.+...+... . . ...++++.+++.+.+... +|+|++|=.-|+ +--+.++.++ .-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~aG---aDiImLDnmspe-~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAHG---AQSVLLDNFTLD-MMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHhhc---CCe
Confidence 3677676665554455544321 1 2 235788999999998643 899999965444 1222233232 223
Q ss_pred EEEEeccCCHHHHHHHHHcCCCe
Q 006649 109 VIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~D 131 (637)
+|-.|+--+.+.+.+-.+.|++-
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCE
Confidence 56678888888888888888863
No 292
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=34.33 E-value=2.2e+02 Score=28.71 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=52.3
Q ss_pred ECCHHHHHHHHHHcCCCc-eEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 63 CSQAAVALDILRERKGCF-DVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 63 asng~EALelLre~~~~p-DLVIlDI~MPd---mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
..+..++.+.+.+.. + .|+++|+.--+ ..-+++++++.+...+||++=.+-.+.+.+.++++.|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g--~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAKG--ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHcC--CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776543 4 48899996643 23467788887667789888777888889999999998876654
No 293
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=34.07 E-value=4.7e+02 Score=25.81 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=61.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.++++|+.+.+. ...++..+...+ ..|......++..+.+.. .|++|.-.... .=|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e-~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFE-GFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCcccc-ccCHHHHHHHH--cCCCEE
Confidence 456666654332 223333444332 233333333444444432 58877765442 23566777663 467877
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
........ .+....+..+++.++-+.+++.+.+.+++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 53222222 234556678899999999999999998864
No 294
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=34.06 E-value=1.8e+02 Score=29.90 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=43.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEeCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~--V~-~asng~EALelLre~--~~~pDLVIlDI~ 88 (637)
+..-+|.-+|-++...+..++.++..++. +. ...++.+.+..+... ...||+|++|..
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 44458999999999999999999887652 32 456777777766433 235999999975
No 295
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=34.00 E-value=5.7e+02 Score=28.13 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=60.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCC---CCCH--HHHHHHHhcc
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMP---DMDG--FKLLEHIGLE 104 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy--~V~~as--ng~EALelLre~~~~pDLVIlDI~MP---dmDG--lELLe~Ir~~ 104 (637)
+++.||-|-+. ++.++++++..+. .|.... +.++..+.+.. .|+.++=.... +.+| ..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45555555442 3445555544332 232222 23344444432 47666532211 1233 45666653
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 105 ~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
..+|||.. ... .+.+.+..|..+++..|-+.++|.+++..++.
T Consensus 327 ~G~PVI~t-~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVST-LHS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEe-CCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46788753 222 24566788999999999999999999998765
No 296
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.98 E-value=2.4e+02 Score=30.00 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=56.5
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH-----H-HHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 34 LRVLVVD--DDITC---LRILEQMLRRCLYNVTTCSQAAVALDI-----L-RERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 34 irVLIVD--DD~~~---re~Lk~lL~~~gy~V~~asng~EALel-----L-re~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
|||.|+- +.+.. .+.+.+.|+..++++.......+.... + ......+|+||+ -+.||- +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 5788872 33333 444555555667777654322211110 0 001113787776 356773 333333
Q ss_pred -ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 103 -LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 103 -~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
...++||+.+.. |-.+|+. .++++++...++++++..+
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 224788887653 3345665 6778999999998876654
No 297
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.65 E-value=1.2e+02 Score=37.11 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=50.3
Q ss_pred CceEEEEe-CCCCCCCHHHHH-HHHhccC-CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 79 CFDVVLSD-VHMPDMDGFKLL-EHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 79 ~pDLVIlD-I~MPdmDGlELL-e~Ir~~~-~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.+.|+|+| ++|-...+++.| +.|.+-+ ++.+|++| .+.+.+...++.-...|-.++++.++|...|.+++++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888887 666555676644 4454433 34455555 3444577788888888999999999999888887654
No 298
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=33.63 E-value=2.2e+02 Score=28.23 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-C--CC-cEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-M--DL-PVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 80 pDLVIlDI~MPdmDG-------lELLe~Ir~~-~--~I-PVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.|.|+++-.-|+.+| ++.+++++.. . .+ ++|++.+--+.+.+.++.+.|++.++.
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 687777654455443 3444444322 1 22 455565555667888888899987644
No 299
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=33.59 E-value=5.8e+02 Score=26.68 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=58.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~-~as-ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
.+||.||---..........+.... ..+. .+. +.+.+.+..++.. ..-+..|+ +.+-..+++-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~~-----------~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTDL-----------EELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCCH-----------HHHhcCCCCC
Confidence 4788888866555444444444432 2433 333 4444444444432 22122221 2222223333
Q ss_pred EEE--EeccCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006649 109 VIM--MSADGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (637)
Q Consensus 109 VII--LSa~~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~V 149 (637)
+|+ .....-.+.+.+|+++|..=|+-||+ +.+|..++++.+
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 333 33455678899999999999999997 678888666654
No 300
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=33.41 E-value=3.2e+02 Score=28.96 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=66.9
Q ss_pred CccEEEEEeCCHH----HHHHH--HHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHH
Q 006649 32 AGLRVLVVDDDIT----CLRIL--EQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLL 98 (637)
Q Consensus 32 ~girVLIVDDD~~----~re~L--k~lL~~~gy~V~~a--sng~EALelLre~~~~pDLVIlDI~MPdmDG-----lELL 98 (637)
..+|+=|+.|+.. ..+.+ .+.|-+.||.|... .+..-|-++.+.. .. +++-+--|-.+| -..+
T Consensus 92 ~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G---ca-avMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAG---CA-AVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT----S-EBEEBSSSTTT---SSTHHHH
T ss_pred CeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCC---CC-EEEecccccccCcCCCCHHHH
Confidence 4577777766642 22222 23345669988643 3444444443322 22 344444443333 3566
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006649 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (637)
Q Consensus 99 e~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~Lq~Vlr 151 (637)
+.|++..++|||+=.+-.....+.+|+++|++..|+ |--++..+.+++++++.
T Consensus 168 ~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 168 RIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 777766799999999999999999999999999986 45577777777777664
No 301
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.35 E-value=3.4e+02 Score=27.74 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=50.3
Q ss_pred eEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 59 NVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 59 ~V~~asng~EALelLre~-~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
-|....+.+++++.++.. ...+++|=+.+ -.-+.++.++++++...--+|-.-.--+.+.+.++++.||. |++-|.
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~-FivsP~ 88 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQ-FIVSPG 88 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCC-EEECCC
Confidence 445566777777655532 12356444444 44458888888875432223334445678889999999996 666676
Q ss_pred CHHHHH
Q 006649 138 REEELK 143 (637)
Q Consensus 138 s~eEL~ 143 (637)
...++.
T Consensus 89 ~~~~v~ 94 (204)
T TIGR01182 89 LTPELA 94 (204)
T ss_pred CCHHHH
Confidence 554444
No 302
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=33.32 E-value=58 Score=32.21 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=34.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
|||||....+-..+.++|...++.+....+-...++.+.... ||.||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALL--PLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcC--CCEEEE
Confidence 899999999999999999988888776554322233344333 886665
No 303
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=33.29 E-value=2.4e+02 Score=29.15 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 64 SQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 64 sng~EALelLre~~~~pDLVIlDI~MPd---mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
.+..+..+.+.+.. .-.|+++|+.-.+ ..-++++++|++..++||++--+-.+.+.+.+++..||+..++-
T Consensus 30 ~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 46777777776542 2358888987543 23466778887666799999888999999999999998876653
No 304
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=33.09 E-value=51 Score=26.49 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=25.9
Q ss_pred HHHHHh-cCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 249 RILELM-NVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 249 kILeLL-~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
+|+++| ...++++.+||+.+|..... .++.++++
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l~~~~~t-~s~hL~~L 48 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEELGISQST-VSYHLKKL 48 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHHTS-HHH-HHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCHHH-HHHHHHHH
Confidence 577777 88999999999999976554 55566655
No 305
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.08 E-value=3.6e+02 Score=30.08 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=44.6
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCcEEEEe-ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlE-LLe~Ir~~~~IPVIILS-a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.|.+|++..-+..==+| ++..+. .....||... ...+...+...++.|+++.+++|-++.++++....+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 46666655433322233 233332 2344555433 34455667789999999999999999999987776533
No 306
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.05 E-value=3.7e+02 Score=28.87 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=57.9
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHH-----H--HHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 34 LRVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALD-----I--LRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 34 irVLIV--DDD~~~r---e~Lk~lL~~~gy~V~~asng~EALe-----l--Lre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
.+|.|+ .+.+... +.+.+.|...++++.......+.+. . .......+|+||+ -+.||- +++.+
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~ 79 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAA 79 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHH
Confidence 358887 3334444 4455556566777765443222111 0 0111123788876 355773 33333
Q ss_pred h--ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 102 G--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 102 r--~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+ ...++||+-+.. |=.+||. .++.+++..+++++++...
T Consensus 80 ~~~~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 80 RALARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHhcCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCCc
Confidence 3 235788876543 5566774 6889999999999987653
No 307
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=33.03 E-value=35 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHhcCCCCCHHHHHhhhccchhhHHHHHHHH
Q 006649 252 ELMNVPGLTRENVASHLQEINLQKFRLYLKR 282 (637)
Q Consensus 252 eLL~v~gLti~EVAshVGy~d~qYFrk~FKk 282 (637)
+++..-|+|..++|+.+| .+.++.+++.+.
T Consensus 3 ~~r~~~gls~~~la~~~g-is~~~i~~~~~g 32 (55)
T PF01381_consen 3 ELRKEKGLSQKELAEKLG-ISRSTISRIENG 32 (55)
T ss_dssp HHHHHTTS-HHHHHHHHT-S-HHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHhC-CCcchhHHHhcC
Confidence 455678999999999999 566666666554
No 308
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=32.96 E-value=2.4e+02 Score=28.35 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 64 SQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 64 sng~EALelLre~~~~pDLVIlDI~M---PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
.+..+..+.+.+.. .-.+.++|+.- ....-+++++++++...+||++=-+-.+.+.+.+++..||+..++-
T Consensus 30 ~~~~~~a~~~~~~g-~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 30 DDPVAQAKAWEDQG-AKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 46667677666543 23577888742 1124478888887667889988777889999999999998876654
No 309
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=32.95 E-value=1.2e+02 Score=23.27 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=31.9
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhh
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHL 268 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshV 268 (637)
.|+.+-...|.++|.++|.+. -++|-+.|. ++.|..++-++-
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~--W~~Ia~~~~-~~Rt~~qc~~~~ 44 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDN--WKKIAKRMP-GGRTAKQCRSRY 44 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTH--HHHHHHHHS-SSSTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcH--HHHHHHHcC-CCCCHHHHHHHH
Confidence 599999999999999999872 245677664 488888887653
No 310
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=32.89 E-value=2.8e+02 Score=30.45 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=41.5
Q ss_pred ccEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH
Q 006649 33 GLRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL 98 (637)
Q Consensus 33 girVLIVDDD~~~-----re~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELL 98 (637)
+-|+|||-|.... .+.+...|+..++++..+. +..++++.+++.. +|.||- +.+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHH
Confidence 3589999776443 3567778877676665443 3446777777765 999875 4555556666
Q ss_pred HHH
Q 006649 99 EHI 101 (637)
Q Consensus 99 e~I 101 (637)
+.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 554
No 311
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.83 E-value=3.8e+02 Score=30.48 Aligned_cols=83 Identities=24% Similarity=0.288 Sum_probs=42.9
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEeCC--CC-CCCHHHHH
Q 006649 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDVH--MP-DMDGFKLL 98 (637)
Q Consensus 32 ~girVLIVDDD~---~~re~Lk~lL~~~gy~V~~as---ng~----EALelLre~~~~pDLVIlDI~--MP-dmDGlELL 98 (637)
.|.+|++||-|. ...+.|+.+-...+..+..+. +.. ++++.+... .+|+||+|.- ++ +.+.++-+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHHH
Confidence 467999999884 233444444444455554433 232 344444333 3999999983 22 12244444
Q ss_pred HHHhc--cCCCcEEEEeccC
Q 006649 99 EHIGL--EMDLPVIMMSADG 116 (637)
Q Consensus 99 e~Ir~--~~~IPVIILSa~~ 116 (637)
..+.. .++-.+.++.+..
T Consensus 205 ~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 205 AAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred HHHHHhhCCceEEEEEeccc
Confidence 44432 2333344555443
No 312
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=32.71 E-value=4.2e+02 Score=28.67 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=57.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----CCe--E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006649 36 VLVVDDDITCLRILEQMLRRC----LYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~----gy~--V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~ 106 (637)
|||=|.|....-.++..+++. ++. | .++++.+++.++++.. +|+|++|=.-|+ ++-+.++. ...
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLDNm~~e----~~~~av~~l~~~~ 233 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLDNMSPE----ELKEAVKLLGLAG 233 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEecCCCHH----HHHHHHHHhccCC
Confidence 666666666555577777642 332 2 4788999999998754 899999965443 33333322 233
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCe
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~D 131 (637)
-.++=.|+.-+.+.+..--..|++-
T Consensus 234 ~~~lEaSGgIt~~ni~~yA~tGVD~ 258 (280)
T COG0157 234 RALLEASGGITLENIREYAETGVDV 258 (280)
T ss_pred ceEEEEeCCCCHHHHHHHhhcCCCE
Confidence 3345577888888888877888763
No 313
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=32.50 E-value=52 Score=32.57 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=35.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
|||||..-.+-..|..+|...+.++..+.+.+..++.+.... ||.||+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iil 49 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALK--PQKIVI 49 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCEEEE
Confidence 899999999999999999988888776665432233343333 887776
No 314
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=32.14 E-value=51 Score=32.98 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
+.+++.++..+ ||.|=+ ||+ --.++++++++.-++|||.=-=-.+.+.+.+|+++||...
T Consensus 107 ~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 107 ETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 46777888766 998765 888 4557777777767889775433578889999999999764
No 315
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.79 E-value=4.2e+02 Score=32.19 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=48.0
Q ss_pred CceEEEEe-CCCCCCCHHHHHHH-HhccC-CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 79 CFDVVLSD-VHMPDMDGFKLLEH-IGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 79 ~pDLVIlD-I~MPdmDGlELLe~-Ir~~~-~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
.+.++|+| ++|-...++..+.+ |.+.+ .+.+|+.|. +.......+...+.-|-.||++.+++...+++++.+.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt--d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT--DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC--ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc
Confidence 37889988 66655556664444 44322 355565553 3333445555666778899999999999999887653
No 316
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=31.76 E-value=2e+02 Score=29.37 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 64 SQAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 64 sng~EALelLre~~~~pDLVIlDI~MPd-mDG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+..+.++.+.+.. .-.+|++|+.--+ +.| ++++++++...++|+|.--+-.+.+...++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 34567777766653 3579999997655 333 5677888655689999988888999999999999988775
No 317
>PF13518 HTH_28: Helix-turn-helix domain
Probab=31.71 E-value=74 Score=24.10 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHh
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLN 284 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~ 284 (637)
|++++. .|.++.+||.++|. +.+-.+++.|++-
T Consensus 5 iv~~~~-~g~s~~~~a~~~gi-s~~tv~~w~~~y~ 37 (52)
T PF13518_consen 5 IVELYL-EGESVREIAREFGI-SRSTVYRWIKRYR 37 (52)
T ss_pred HHHHHH-cCCCHHHHHHHHCC-CHhHHHHHHHHHH
Confidence 445555 46699999999999 5566777877774
No 318
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=31.70 E-value=4.4e+02 Score=27.33 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=33.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
+.+|..+|-++...+..++-+...+..+. ..+..+.+.... ...+|+||+|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhhcchhc--CCCEeEEEECC
Confidence 35899999999998888887776554443 333333332111 12499999984
No 319
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.56 E-value=1.7e+02 Score=31.74 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=58.4
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEeCCCCCCC
Q 006649 35 RVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDMD 93 (637)
Q Consensus 35 rVLIV--DDD~~~r---e~Lk~lL~~~gy~V~~asng~EALel----------------Lre~~~~pDLVIlDI~MPdmD 93 (637)
+|.|+ .+.+... ..+.+.|...++.+.......+.+.. .......+|+||+ -+.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 46676 3344344 44555555667777654432222110 0111113677776 3567
Q ss_pred HHHHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 94 GFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 94 GlELLe~Ir~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
| .+++..+. ..++||+-+. .|-.+||.- ++++++...++++++..+
T Consensus 79 G-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 79 G-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred H-HHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCCc
Confidence 7 45555543 3578887653 366778884 678999999999887654
No 320
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=31.35 E-value=57 Score=32.13 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=26.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS 64 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~as 64 (637)
+||||||....+-..+.++|+..++++.+..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 7999999988888889999999888776655
No 321
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.30 E-value=4.4e+02 Score=26.23 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=52.1
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 57 gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
-.-|....+.+++++.++..-. -.+=++.+++...+..++++.+++....-.+--..--..+.+..|++.||+..++--
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~-~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAA-GGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHH-CCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 3456677788888887664210 123456677777788888888864332211111111123678889999998776655
Q ss_pred CCHHHHH
Q 006649 137 IREEELK 143 (637)
Q Consensus 137 is~eEL~ 143 (637)
++.+.+.
T Consensus 93 ~~~~~~~ 99 (187)
T PRK07455 93 VDPELIE 99 (187)
T ss_pred CCHHHHH
Confidence 6655544
No 322
>PHA01976 helix-turn-helix protein
Probab=31.20 E-value=54 Score=26.41 Aligned_cols=33 Identities=3% Similarity=-0.016 Sum_probs=24.5
Q ss_pred hHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 247 PKRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 247 PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
+++|.++....|+|..++|.++|.+ .++++++.
T Consensus 4 ~~rl~~~R~~~glt~~~lA~~~gvs-~~~v~~~e 36 (67)
T PHA01976 4 AIQLIKARNARAWSAPELSRRAGVR-HSLIYDFE 36 (67)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHH
Confidence 3566677788999999999999965 45455444
No 323
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.18 E-value=2.9e+02 Score=26.88 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=47.9
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCC-------CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPdm-------DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
..|.+.+++.++.+ .. +|-|++---.|.. -|++.++++.....+||+.+-+-+ .+.+.++.+.|+++.-
T Consensus 100 ~S~h~~~e~~~a~~-~g--~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEE-LG--ADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHH-CT--TSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhh-cC--CCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 47889898666553 33 7998887654432 389999988777779999987753 4556778899998763
No 324
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.86 E-value=2.5e+02 Score=29.29 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=53.7
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 63 CSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 63 asng~EALelLre~~~~pDLVIlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
..+..+..+.+.... --.|+++|+.--++ .-+++++++.+...+||++=.+-.+.+.+.+.+..|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 346677767666543 23699999976642 3478899987667889887777888999999999999887654
No 325
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=30.82 E-value=2.4e+02 Score=30.92 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=41.3
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006649 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (637)
Q Consensus 34 irVLIVDDD~~-----~re~Lk~lL~~~gy~V~~a---------sng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe 99 (637)
-|+|||-|... ..+.+...|+..+.++..+ .+..++.+.+++.. +|+||. ..+..-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 48999987654 3356777777766655544 23456777777765 999885 45656666666
Q ss_pred HH
Q 006649 100 HI 101 (637)
Q Consensus 100 ~I 101 (637)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 55
No 326
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=30.72 E-value=1.2e+02 Score=32.17 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCH
Q 006649 72 ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (637)
Q Consensus 72 lLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~ 139 (637)
++++.. ||++|.=---|..-|-.-.+++-...++|.|++|-..... .+++++..-.+||+-+.++
T Consensus 54 ~~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~Dp 118 (276)
T PF01993_consen 54 MLKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKADP 118 (276)
T ss_dssp HHHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS-
T ss_pred HHHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecCc
Confidence 445666 9999886655666788878877656799999998755444 5688888888998776653
No 327
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=30.57 E-value=43 Score=26.70 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=20.4
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
+|.+++..-|+|.+++|..+|.+ .++++++.
T Consensus 3 ~lk~~r~~~~lt~~~~a~~~~i~-~~~i~~~e 33 (64)
T PF12844_consen 3 RLKELREEKGLTQKDLAEKLGIS-RSTISKIE 33 (64)
T ss_dssp HHHHHHHHCT--HHHHHHHHTS--HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 45567777899999999999986 44444444
No 328
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.38 E-value=1.8e+02 Score=31.27 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=57.3
Q ss_pred EEEEE--eCCHHHHHH---HHHHHHhCCCeEEEECCHHHHHH-------HHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 35 RVLVV--DDDITCLRI---LEQMLRRCLYNVTTCSQAAVALD-------ILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 35 rVLIV--DDD~~~re~---Lk~lL~~~gy~V~~asng~EALe-------lLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
+|+|+ -+.+...+. +.+.|...++.+.........+. ........+|+||+ -+.||- +++..+
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHHH
Confidence 57887 344444444 44445555777765443322221 00111123688777 356773 344443
Q ss_pred c--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 103 ~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
. ..++||+-+- .|-.+||. .++++++...+++++...+
T Consensus 82 ~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 82 VLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred HhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 2 2467877543 35567877 6789999999999877654
No 329
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.35 E-value=7.2e+02 Score=26.78 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hCC--C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006649 35 RVLVVDDDITCL--R--ILEQMLR----RCL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (637)
Q Consensus 35 rVLIVDDD~~~r--e--~Lk~lL~----~~g--y-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~ 103 (637)
.|||=|.|-.+. - .+...+. ... . ...++.+.+++.+.+.. .+|+|++|=.-|+ +--+.++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e-~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD-DLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH-HHHHHHHHhC-
Confidence 477777775543 1 2444443 233 2 23589999999998864 3899999965443 2222333333
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCCe
Q 006649 104 EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 104 ~~~IPVIILSa~~d~e~a~kAl~~GA~D 131 (637)
...+|-.|+--+.+.+.+-...|++-
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~ 261 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDV 261 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 22367788888888888888888763
No 330
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=30.32 E-value=5.2e+02 Score=30.44 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=67.6
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHh---ccCCCcEEEEeccCCH
Q 006649 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (637)
Q Consensus 49 Lk~lL~~~gy~V~~--asng~EALelLre~~~~pDLVIlDI~MP-----dmDGlELLe~Ir---~~~~IPVIILSa~~d~ 118 (637)
....|+..|+.+.. +.++-..+..+.... ||.|-+|-.+- +.....+++.+. ...++.|| ..+-++.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~~ 759 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVETK 759 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCCH
Confidence 33456677888754 667778888887766 99999997442 112344555552 33556544 5677888
Q ss_pred HHHHHHHHcCCC----eEEeCCCCHHHHHHHHHH
Q 006649 119 SAVMRGIRHGAC----DYLIKPIREEELKNIWQH 148 (637)
Q Consensus 119 e~a~kAl~~GA~----DYLlKPis~eEL~~~Lq~ 148 (637)
+....+.+.|++ .|+.||...++|..-++.
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 888889999997 378899999999875543
No 331
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.17 E-value=1.7e+02 Score=28.01 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=43.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC----CHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~as----ng~EALelLre~~~~pDLVIlDI~MPd 91 (637)
..|-+|+|+.......+-|..+|.+.+..|+.|. +..++ +++ -|+|++-.--+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hhh----CCEEEEecCCCC
Confidence 3677999999999999999999999999999887 43333 322 699999886664
No 332
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=30.12 E-value=4.9e+02 Score=28.00 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~L 146 (637)
++..+.+.. .|+.++ ...++.-|+.+++.+. ..+|||. |... ...+.+..|..+++..|-+.++|.+.+
T Consensus 292 ~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA--~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i 360 (396)
T cd03818 292 DQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA--CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAAV 360 (396)
T ss_pred HHHHHHHHh----CcEEEE-cCcccccchHHHHHHH--CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHHH
Confidence 455555543 466554 2345555666777664 4678775 3222 244566778899999999999999999
Q ss_pred HHHHHH
Q 006649 147 QHVVRK 152 (637)
Q Consensus 147 q~Vlrk 152 (637)
.+++..
T Consensus 361 ~~ll~~ 366 (396)
T cd03818 361 IELLDD 366 (396)
T ss_pred HHHHhC
Confidence 888753
No 333
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=29.88 E-value=4.2e+02 Score=26.59 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC---------CCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHH---HHHcCCC
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR---GIRHGAC 130 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPd---------mDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~k---Al~~GA~ 130 (637)
+..+.++.+.... +|.|++|+.-.. .+-.+++..++. .....+++=....+.....+ ++..|++
T Consensus 9 ~~~~~~~~a~~~g--~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 9 NSPKMLEKAAASG--ADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp TSHHHHHHHHTTC--SSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhcC--CCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 3445555555444 999999997544 223344444433 12345666555556556666 9999999
Q ss_pred eEEeCCC-CHHHHHHHHHHH
Q 006649 131 DYLIKPI-REEELKNIWQHV 149 (637)
Q Consensus 131 DYLlKPi-s~eEL~~~Lq~V 149 (637)
+.++-=+ +.++++.+.+.+
T Consensus 87 gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp EEEETT--SHHHHHHHHHHH
T ss_pred eeeccccCcHHHHHHHHHHH
Confidence 8766444 677777766654
No 334
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.85 E-value=1.7e+02 Score=28.54 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEEE--eccCCHHHHHHHHHcCCCeEEeCCCCH
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIMM--SADGRVSAVMRGIRHGACDYLIKPIRE 139 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir~~-~~IPVIIL--Sa~~d~e~a~kAl~~GA~DYLlKPis~ 139 (637)
+.+++++.++.....++ .+.+.+|- ..|++.++.+++. +++|+++. ........+..+.++||+..+.-....
T Consensus 11 ~~~~~~~~~~~l~~~i~--~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDGVD--IIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhcCC--EEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 45555555554432223 34443332 3578889988764 57887763 222222346778899998776654332
Q ss_pred -HHHHHHHHHH
Q 006649 140 -EELKNIWQHV 149 (637)
Q Consensus 140 -eEL~~~Lq~V 149 (637)
+.+...++.+
T Consensus 89 ~~~~~~~i~~~ 99 (202)
T cd04726 89 LSTIKKAVKAA 99 (202)
T ss_pred HHHHHHHHHHH
Confidence 3444444443
No 335
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=29.84 E-value=4e+02 Score=30.18 Aligned_cols=99 Identities=15% Similarity=0.270 Sum_probs=61.5
Q ss_pred CccEEEEEeC---C-HHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006649 32 AGLRVLVVDD---D-ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (637)
Q Consensus 32 ~girVLIVDD---D-~~~re~Lk~lL~~~-gy~--V~~asng~EALelLre~~~~pDLVIlDI~MPd------------m 92 (637)
.|..++.||- + ....+.++++-+.+ ... +..+.+.++|..++... .|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG---ad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG---ADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCCccceecCCCc
Confidence 5778888887 4 33444444443332 222 33577888888877643 687754321 11 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 93 DGlELLe~Ir---~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
--+.++..+. ...++|||.=-+-.....+.+|+.+||+....
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 1234433332 23578988777888899999999999997765
No 336
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=29.80 E-value=7.8e+02 Score=27.02 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCccEEEEEeCCH-HHHHHHHHHHHhCCCeEEEECCHHH-HHHHHHHcCCCceEEEEeCCCCCCCH--------HHHHHH
Q 006649 31 PAGLRVLVVDDDI-TCLRILEQMLRRCLYNVTTCSQAAV-ALDILRERKGCFDVVLSDVHMPDMDG--------FKLLEH 100 (637)
Q Consensus 31 p~girVLIVDDD~-~~re~Lk~lL~~~gy~V~~asng~E-ALelLre~~~~pDLVIlDI~MPdmDG--------lELLe~ 100 (637)
|..+-+.|.|+-+ .+-+.++..+.. .+.+..+ |.+..++.. .|+|-+-+.-.+-++ .++++.
T Consensus 47 ~p~ia~~v~D~~~~~~~~~i~~~~~~------v~~~p~~~Ak~q~~~~G--Ad~Idl~~~s~dp~~~d~~~~e~~~~Vk~ 118 (319)
T PRK04452 47 PPVIAMEVFDMPPEDWPEAVKEPFGD------VMNDPAAWAKKCVEEYG--ADMITLHLISTDPNGKDKSPEEAAKTVEE 118 (319)
T ss_pred CCeEEEEEecCCCcccHHHHHHHHHH------HhcCHHHHHHHHHHHhC--CCEEEEECCCCCcccccchHHHHHHHHHH
Confidence 5667788888876 445555555554 1233332 333332333 675544432222221 234444
Q ss_pred HhccCCCcEEEEecc---CCHHHHHHHHHcCCCe-EEeCCCCHHHHHHHHHHH
Q 006649 101 IGLEMDLPVIMMSAD---GRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHV 149 (637)
Q Consensus 101 Ir~~~~IPVIILSa~---~d~e~a~kAl~~GA~D-YLlKPis~eEL~~~Lq~V 149 (637)
+.+.-++|+++.++. .|.+...++++.-... -|+=+++.+.++....-+
T Consensus 119 V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA 171 (319)
T PRK04452 119 VLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAA 171 (319)
T ss_pred HHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHH
Confidence 445578999877653 3788888888765533 677788888765555544
No 337
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.49 E-value=2.3e+02 Score=29.13 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 66 AAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 66 g~EALelLre~~~~pDLVIlDI~MPd-mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..++++.+++.. -.+|++|+.--+ +.|++ +..+...++|||.--+-.+.+...++.+.|+++.+.
T Consensus 145 ~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d--~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 145 VEDAYEMLKNYV--NRFIYTSIERDGTLTGIE--EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred HHHHHHHHHHHh--CEEEEEeccchhcccCHH--HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 456666666542 479999998766 47877 222222579999988888999999999999988654
No 338
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=29.40 E-value=2.8e+02 Score=30.88 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=51.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~-V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~-Ir~~~~IPVI 110 (637)
-+|..+|-++...+.+++-++..+.. + ....++.+.+.. . ..+|+|++|- |+ .+.+++.. ++....-.+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~--~~fD~V~lDP--~G-s~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E--RKFDVVDIDP--FG-SPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c--CCCCEEEECC--CC-CcHHHHHHHHHHhcCCCEE
Confidence 36999999999999999888765543 2 344455444432 2 2499999985 44 34567666 5544445688
Q ss_pred EEeccCCH
Q 006649 111 MMSADGRV 118 (637)
Q Consensus 111 ILSa~~d~ 118 (637)
.+|+.+-.
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 88876543
No 339
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=29.40 E-value=1e+02 Score=30.25 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHH
Q 006649 233 FVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFR 277 (637)
Q Consensus 233 FveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFr 277 (637)
+-+++.++.--.-.-.++++|+...|+|.+|||.++|.+...-.+
T Consensus 126 l~e~l~~L~~l~~~~~~~v~l~~~~Gls~~EIA~~lgiS~~tV~r 170 (185)
T PF07638_consen 126 LEEALERLLALDPRQRRVVELRFFEGLSVEEIAERLGISERTVRR 170 (185)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHH
Confidence 444455443211112577888888999999999999998655443
No 340
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.23 E-value=4.7e+02 Score=27.53 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=58.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEE-eCCCC--C------CCHHHHHHHHhc
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLS-DVHMP--D------MDGFKLLEHIGL 103 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~-as--ng~EALelLre~~~~pDLVIl-DI~MP--d------mDGlELLe~Ir~ 103 (637)
++|.|=.....+.+...++..+..... +. +..+=++.+.+.. .+.|-+ .. ++ + .+..++++++++
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~-~GvTG~~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSR-AGVTGARSADAADLAELVARLKA 197 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeC-CCCCCcccCCCccHHHHHHHHHh
Confidence 344444454555556666666654332 22 2234455555544 454432 11 11 1 234568888887
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 104 ~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
..++||++=.+-.+.+.+.++... |++.++-.
T Consensus 198 ~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 198 HTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred cCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 778999987778888889888875 99988754
No 341
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.14 E-value=4.9e+02 Score=28.21 Aligned_cols=90 Identities=11% Similarity=0.060 Sum_probs=57.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 35 RVLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~----~g--y-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
-|||=|.|-.+.-.+...+.. .. . ...++.+.+++.+.+... +|+|++|=.-|+ +--+..+.++ .-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~ag---aDiImLDnmspe-~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAG---ADIIMLDNMSLE-QIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHHhc---Cc
Confidence 477777776555445555543 22 2 234788999999998643 899999965444 2222333332 22
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCe
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~D 131 (637)
.++-.|+--+.+.+.+-...|++-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCE
Confidence 356678788888888888888863
No 342
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.12 E-value=3.1e+02 Score=28.22 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHH---cCCCeEE------e
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR---HGACDYL------I 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~---~GA~DYL------l 134 (637)
.+..+.+.+.. --.++++|+..-++ -.+++++++++..++|||.-..-.+.+.+.++.+ .|+++.+ .
T Consensus 149 ~~~~~~l~~~G-~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 149 WEVLERLDSAG-CSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred HHHHHHHHhcC-CCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 44455554432 23588889865432 2377888887767899998777778888877754 4888754 4
Q ss_pred CCCCHHHHHHH
Q 006649 135 KPIREEELKNI 145 (637)
Q Consensus 135 KPis~eEL~~~ 145 (637)
.+++.++++..
T Consensus 228 g~~~~~~~~~~ 238 (241)
T PRK14024 228 GAFTLPEALAV 238 (241)
T ss_pred CCCCHHHHHHH
Confidence 56777776544
No 343
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.10 E-value=3.8e+02 Score=32.89 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=59.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC--CCCCC-CHHHHHHHHh-c-cC
Q 006649 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMPDM-DGFKLLEHIG-L-EM 105 (637)
Q Consensus 34 irVLIVDDD~~---~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI--~MPdm-DGlELLe~Ir-~-~~ 105 (637)
.+|.+|+-|.. ..+.++.+-+..+..+..+.+..+..+.++... ..|+||+|. +++.. +-.+.+..+. . .+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 58888887753 335566666666766777778888777777654 479999997 22211 1233333332 1 23
Q ss_pred CCcEEEEeccCCHH---HHHHHHHc----CCCeEEeCCC
Q 006649 106 DLPVIMMSADGRVS---AVMRGIRH----GACDYLIKPI 137 (637)
Q Consensus 106 ~IPVIILSa~~d~e---~a~kAl~~----GA~DYLlKPi 137 (637)
.-.++++++....+ .+.+.|+. +..++|.==+
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEecc
Confidence 33456666654433 34456653 4566654333
No 344
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=29.09 E-value=8.9e+02 Score=27.44 Aligned_cols=112 Identities=12% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH-----HHHHHH---
Q 006649 31 PAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-----KLLEHI--- 101 (637)
Q Consensus 31 p~girVLIVDDD-~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGl-----ELLe~I--- 101 (637)
|..+-+.|.|+. ..+-+.++..+.... -+.++-+.+.++... .|+|-+-..-.+-+|. ++.+.+
T Consensus 111 pp~ia~dV~D~~~~~~~~~i~~~~~dV~-----~dP~~wak~~V~~~~--aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V 183 (389)
T TIGR00381 111 PPVVTFDVFDIPMPGLPKPIRMHFEDVM-----EDPAEWARKCVKEFG--ADMVTIHLISTDPKLDDKSPSEAAKVLEDV 183 (389)
T ss_pred CCeEEEEEecCCccccHHHHHHHHHHHh-----cCHHHHHHHHHHHhC--CCEEEEEecCCCccccccCHHHHHHHHHHH
Confidence 567888888872 343444444444310 011122233333333 6777665543333321 333333
Q ss_pred hccCCCcEEEEec---cCCHHHHHHHHHcCCC-eEEeCCCCHH-HHHHHHHHH
Q 006649 102 GLEMDLPVIMMSA---DGRVSAVMRGIRHGAC-DYLIKPIREE-ELKNIWQHV 149 (637)
Q Consensus 102 r~~~~IPVIILSa---~~d~e~a~kAl~~GA~-DYLlKPis~e-EL~~~Lq~V 149 (637)
.+.-++|+|+.++ ..|.+...+|++.-.. .-|+-..+.+ .++.....+
T Consensus 184 ~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lA 236 (389)
T TIGR00381 184 LQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAA 236 (389)
T ss_pred HHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHH
Confidence 3446778777766 5666667777766544 4666666666 554444433
No 345
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=29.09 E-value=1.1e+02 Score=31.09 Aligned_cols=53 Identities=30% Similarity=0.343 Sum_probs=38.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCL--YNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~g--y~V~-~asng~EALelLre~~~~pDLVIlDI 87 (637)
-++++||-|......|++-++..+ -.+. ...++..++..+... ..+|+|++|=
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 589999999999999999988765 2332 344555666555433 2499999994
No 346
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=28.91 E-value=5.9e+02 Score=25.29 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=53.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE-EC-------CHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHHHhccCC
Q 006649 40 DDDITCLRILEQMLRRCLYNVTT-CS-------QAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIGLEMD 106 (637)
Q Consensus 40 DDD~~~re~Lk~lL~~~gy~V~~-as-------ng~EALelLre~~~~pDLVIlDI~M----P-dmDGlELLe~Ir~~~~ 106 (637)
.+-....+.++.+-+..+..+.. +. +..+.++.+.+.. .|.|.+.-.. + ..-.++.++++++..+
T Consensus 106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~G--vd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAG--ASALTVHGRTREQRYSGPADWDYIAEIKEAVS 183 (231)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhC--CCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC
Confidence 34444555555554444432221 11 2233444444433 7777654431 1 1234778888887788
Q ss_pred CcEEEEeccCCHHHHHHHHHc-CCCe
Q 006649 107 LPVIMMSADGRVSAVMRGIRH-GACD 131 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~-GA~D 131 (637)
+|||.--+-.+.+.+.+++.. ||+.
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~ 209 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDG 209 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCE
Confidence 999988777889999999998 6665
No 347
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.88 E-value=7.5e+02 Score=27.75 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=53.2
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC--CCCCCCHHH---HHHHHhc
Q 006649 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMPDMDGFK---LLEHIGL 103 (637)
Q Consensus 32 ~girVLIVDDD~~---~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI--~MPdmDGlE---LLe~Ir~ 103 (637)
.+.+|++|+-|.. ..+.|+.+.+..+..+..+.+..+..+.+... ..+|+||+|. +++ .|-.. +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 3678999987763 23334444444567777777777766666554 3599999997 233 24332 2222222
Q ss_pred -cCC-CcEEEEeccCCHHHHHHHH
Q 006649 104 -EMD-LPVIMMSADGRVSAVMRGI 125 (637)
Q Consensus 104 -~~~-IPVIILSa~~d~e~a~kAl 125 (637)
.++ -.+++|++......+.+.+
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 3456777766655554433
No 348
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=28.88 E-value=1.7e+02 Score=30.09 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=42.9
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006649 34 LRVLVVDDDI------TCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (637)
Q Consensus 34 irVLIVDDD~------~~re~Lk~lL~~~gy~V~~asng~-EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~ 106 (637)
||||++-... .....+...|...|++|..+.... ...+.+.... ||+|.+-......-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~--~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEIIN--ADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhccc--CCEEEEEccccCccCHHHHHHHH--cC
Confidence 5788875543 456667777777788876444333 3444444444 99998755333333334444432 35
Q ss_pred CcEEEE
Q 006649 107 LPVIMM 112 (637)
Q Consensus 107 IPVIIL 112 (637)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 676643
No 349
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=28.87 E-value=3.3e+02 Score=28.91 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 95 lELLe~Ir~~~--~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
++.+.++++.- ++|||...+-.+.+.+.+.+..||+..
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V 278 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVV 278 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChh
Confidence 67777776544 899999999999999999999999864
No 350
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=28.85 E-value=1.2e+02 Score=29.00 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 31 p~girVLIVDDD~~~---------re~Lk~lL~~~-gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
+..++|.|||.|... -+.+.+.|... .+.+.. .+.++|.+.++..+ ++.+|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcCc--EEEEEE
Confidence 356889999988654 34455555543 445443 48899999998766 777654
No 351
>PRK04302 triosephosphate isomerase; Provisional
Probab=28.79 E-value=6.2e+02 Score=25.57 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 96 KLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 96 ELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
++++.+++. .++|||.-.+-.+.+.+.+++..|+++.+.-
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 345556653 4689988888888999999999999998754
No 352
>PRK10867 signal recognition particle protein; Provisional
Probab=28.63 E-value=5.5e+02 Score=29.26 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=31.2
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---CHHH----HHHHHHHcCCCceEEEEeC
Q 006649 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCS---QAAV----ALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 33 girVLIVDDD~~~---re~Lk~lL~~~gy~V~~as---ng~E----ALelLre~~~~pDLVIlDI 87 (637)
|.+|++|+-|..- .+.|+.+.+..+..+.... +..+ +++..+.. .+|+||+|.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~--~~DvVIIDT 191 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKEN--GYDVVIVDT 191 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeC
Confidence 7899999988533 2334444455565555432 3333 33333333 499999998
No 353
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=28.58 E-value=5.8e+02 Score=25.86 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHH
Q 006649 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (637)
Q Consensus 66 g~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~ 145 (637)
..+..+.+.. .|++++-....+.-|+.+++.+. ..+|||.--. . ...+.+..|..+|+..+ .++|..+
T Consensus 234 ~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~-~---~~~e~i~~~~~g~l~~~--~~~l~~~ 301 (335)
T cd03802 234 GAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRR-G---AVPEVVEDGVTGFLVDS--VEELAAA 301 (335)
T ss_pred HHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCC-C---CchhheeCCCcEEEeCC--HHHHHHH
Confidence 3444444442 57777655444555777777764 3578774322 2 23455677888999987 8888888
Q ss_pred HHHHH
Q 006649 146 WQHVV 150 (637)
Q Consensus 146 Lq~Vl 150 (637)
+..+.
T Consensus 302 l~~l~ 306 (335)
T cd03802 302 VARAD 306 (335)
T ss_pred HHHHh
Confidence 87763
No 354
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=28.54 E-value=5e+02 Score=27.24 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=37.4
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 93 DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
-|+-+++.+. ..+|||......- ..+.+..|..+|+..|-+.++|..++..++..
T Consensus 291 ~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 291 FGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred cChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 3555566553 4678776432111 23446678899999999999999999888753
No 355
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.53 E-value=2.5e+02 Score=27.88 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEE----C--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTC----S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~--gy~V~~a----s--ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
..+++|.++-..+...+.+.+.|+.. +..+... . +.++.++.+.+.. ||+|++-+-+|...- ++.+.+
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~--~dil~VglG~PkQE~--~~~~~~ 121 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG--AGIVFVGLGCPKQEI--WMRNHR 121 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEEcCCcHhHH--HHHHhH
Confidence 35689999999999999999999875 3444322 1 1234456666655 999999999998653 334444
Q ss_pred ccCCCcEEE
Q 006649 103 LEMDLPVIM 111 (637)
Q Consensus 103 ~~~~IPVII 111 (637)
.....+|++
T Consensus 122 ~~~~~~v~~ 130 (177)
T TIGR00696 122 HLKPDAVMI 130 (177)
T ss_pred HhCCCcEEE
Confidence 333344443
No 356
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=28.53 E-value=2.1e+02 Score=27.96 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=58.0
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh---ccCCCcEEEEeccCCH
Q 006649 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (637)
Q Consensus 49 Lk~lL~~~gy~V~~--asng~EALelLre~~~~pDLVIlDI~MPd-----mDGlELLe~Ir---~~~~IPVIILSa~~d~ 118 (637)
+.+.+...|+.+.. +..+...++.+.... ||.|-+|..+.. .....+++.+. ...+++ +++++-++.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-EEEEecCCH
Confidence 33445566887764 456667777777765 999999964431 22345555552 234555 456778888
Q ss_pred HHHHHHHHcCCC----eEEeCCCCHH
Q 006649 119 SAVMRGIRHGAC----DYLIKPIREE 140 (637)
Q Consensus 119 e~a~kAl~~GA~----DYLlKPis~e 140 (637)
+....+.++|++ .|+.||...+
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCCC
Confidence 888899999995 3677887643
No 357
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=28.47 E-value=4e+02 Score=34.26 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=67.7
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCC-CCCHH-HHHHHHhcc
Q 006649 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDGF-KLLEHIGLE 104 (637)
Q Consensus 34 irVLIV----DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MP-dmDGl-ELLe~Ir~~ 104 (637)
-+|++. |-|.+=...+.-+|+..||+|+... ..++.++.+++.. +|+|-+-..|. .+..+ ++++.+++.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 467777 6666667777778888899998654 4678888888776 99999987764 34433 456667543
Q ss_pred -CCCcEEEEeccCCHHHHHH---HHHcCCCeEEeCCC
Q 006649 105 -MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKPI 137 (637)
Q Consensus 105 -~~IPVIILSa~~d~e~a~k---Al~~GA~DYLlKPi 137 (637)
.++||++=-+--+.+++.. ....||+.|-.-..
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 5677776555444544432 12338888876443
No 358
>PHA02943 hypothetical protein; Provisional
Probab=28.36 E-value=72 Score=31.54 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccch--hhHHHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEIN--LQKFRLYLKRL 283 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d--~qYFrk~FKk~ 283 (637)
+.||++|..+..|.+|||.++|-+. .+|+-+++-|.
T Consensus 14 ~eILE~Lk~G~~TtseIAkaLGlS~~qa~~~LyvLErE 51 (165)
T PHA02943 14 IKTLRLLADGCKTTSRIANKLGVSHSMARNALYQLAKE 51 (165)
T ss_pred HHHHHHHhcCCccHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4588999778889999999999975 45555556554
No 359
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=28.31 E-value=3.6e+02 Score=28.26 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=56.1
Q ss_pred hCCCeEEEECCHH--------HHH-HHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHH
Q 006649 55 RCLYNVTTCSQAA--------VAL-DILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI 125 (637)
Q Consensus 55 ~~gy~V~~asng~--------EAL-elLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl 125 (637)
+.+..|..+.++. .+. +++++.. ||.||.=---|..-|-.-.+++-...++|.|+++.-. ...+++.+
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~~~--pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP-g~~vkdel 105 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEEFN--PDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP-GLKVKDEL 105 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc-cchhHHHH
Confidence 4467777766552 222 3555555 9999987666777788888888667889999887544 45567778
Q ss_pred HcCCCeEEeCCCC
Q 006649 126 RHGACDYLIKPIR 138 (637)
Q Consensus 126 ~~GA~DYLlKPis 138 (637)
+-.-.+||+-+.+
T Consensus 106 eeqGlGYIivk~D 118 (277)
T COG1927 106 EEQGLGYIIVKAD 118 (277)
T ss_pred HhcCCeEEEecCC
Confidence 7777888766544
No 360
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=28.12 E-value=1.1e+02 Score=23.26 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=22.6
Q ss_pred HHHHHHh-cCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 248 KRILELM-NVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 248 KkILeLL-~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
++|+.+| ..+++|+.+||..+|.+. ..-++++|+.
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is~-~tv~~~l~~L 41 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGISR-STVNRYLKKL 41 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS-H-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCH-HHHHHHHHHH
Confidence 3456444 678999999999999654 3455555554
No 361
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=28.11 E-value=2.1e+02 Score=32.43 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=40.8
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 79 ~pDLVIlDI~MPd-mDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
..|+|.+|..-.. ...++++++|+.. +++|||+ ..-.+.+.+..++++||+...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 3899999995443 3467788888765 6788776 445677889999999997763
No 362
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=28.08 E-value=51 Score=35.14 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=26.9
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q~ 290 (637)
..++++++|.++|.+- .||.+.||+. |+|++.
T Consensus 157 ~~lsl~~lA~~~g~S~-~~L~R~Fk~~-G~S~~~ 188 (274)
T PRK09978 157 HEWTLARIASELLMSP-SLLKKKLREE-ETSYSQ 188 (274)
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHhc-CCCHHH
Confidence 4689999999998765 6899999986 988863
No 363
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.95 E-value=3.2e+02 Score=28.97 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE------EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEE
Q 006649 41 DDITCLRILEQMLRRC-LYNVT------TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 41 DD~~~re~Lk~lL~~~-gy~V~------~asng~EALelLre~~~~pDLVIlDI~MPd-mDGlELLe~Ir~~~~IPVIIL 112 (637)
|.....+.++++++.. +..++ .+.+..+|++.+.+.. +|=||+-=.-+. .+|++.++++.+...-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG--~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG--VARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4466677788888765 34443 3568889999888775 999998765554 689999998854333345666
Q ss_pred eccCCHHHHHHHHHcCCCeEEe
Q 006649 113 SADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLl 134 (637)
-+--..+.+.+....|+..|-.
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVHS 197 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEee
Confidence 6655666666666788887753
No 364
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=27.89 E-value=47 Score=26.40 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
+|.++|..-|+|.+++|...|.+. +.++++++
T Consensus 1 ~L~~~m~~~~it~~~La~~~gis~-~tl~~~~~ 32 (63)
T PF13443_consen 1 KLKELMAERGITQKDLARKTGISR-STLSRILN 32 (63)
T ss_dssp HHHHHHHHTT--HHHHHHHHT--H-HHHHHHHT
T ss_pred CHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHh
Confidence 456788999999999999998776 44444444
No 365
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=27.66 E-value=4.4e+02 Score=28.87 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=42.6
Q ss_pred ceEEEEeCCCCCC-CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 80 FDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 80 pDLVIlDI~MPdm-DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
.|+|++|+--... .-++.+++|++....|+|+.-.-...+.++.+++.||+....-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 6999999955443 4567888887665666666665678999999999999887643
No 366
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=27.66 E-value=6.1e+02 Score=25.06 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=41.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.|++|.-... +.-|..+++.+. ..+|||.... .. ..+.+..+-.+++..+.+.++|.+.+.+++.
T Consensus 276 ~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 276 ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 4666654333 333555666553 3677765332 22 3344556788899999999999999988754
No 367
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.65 E-value=1.9e+02 Score=30.95 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=39.3
Q ss_pred HHHHHHHHh-ccCCCcEEEEeccCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006649 94 GFKLLEHIG-LEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (637)
Q Consensus 94 GlELLe~Ir-~~~~IPVIILSa~~d------~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq 147 (637)
-+++++++| ....+|+|+|+=+.. .....++-+.|+++.|+--+.+|+-.....
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLK 141 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Confidence 467777777 447899999985443 344778999999999998777776654433
No 368
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.60 E-value=5.5e+02 Score=26.26 Aligned_cols=92 Identities=14% Similarity=0.039 Sum_probs=58.8
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-Cc--EEEEeccCCHHHHHHHHH
Q 006649 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-LP--VIMMSADGRVSAVMRGIR 126 (637)
Q Consensus 51 ~lL~~~g-y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~-IP--VIILSa~~d~e~a~kAl~ 126 (637)
+.|.... .-|....+.++++..++... .--+=++.+.|-.-+.++.++.+++... -| +|-.-.--+.+.+.+|++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3444433 45667778888887766432 1233456666666679999999975432 12 333445668889999999
Q ss_pred cCCCeEEeCCCCHHHHHH
Q 006649 127 HGACDYLIKPIREEELKN 144 (637)
Q Consensus 127 ~GA~DYLlKPis~eEL~~ 144 (637)
.||. |++-|.-..++.+
T Consensus 87 aGA~-FivsP~~~~~v~~ 103 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAK 103 (213)
T ss_pred cCCC-EEECCCCCHHHHH
Confidence 9996 6667766555544
No 369
>PRK05637 anthranilate synthase component II; Provisional
Probab=27.53 E-value=1e+02 Score=31.30 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=35.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
-||||||...-+...|..+|++.++.+..+..... ++.+.... ||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~~--~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAAN--PDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhcC--CCEEEE
Confidence 37999999999999999999998887776654322 23333333 787777
No 370
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=27.44 E-value=4.6e+02 Score=27.29 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=61.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~a--sng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
.+++|+.+.+.. +.++. ...-.|... -+.++..+.+.. .|++++-.. +.-|+-+++.+. ...|||.
T Consensus 222 ~~l~ivG~g~~~-~~l~~---~~~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRA---KAGPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIA 289 (351)
T ss_pred CcEEEEECChhH-HHHHh---hcCCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEE
Confidence 567777766542 23333 112233332 344556666643 577776543 334556666654 4678876
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
..... ..+.+..|..+++..|-+.++|.+++..++..
T Consensus 290 ~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 290 YGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred eCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 43222 23445667789999999999999999887653
No 371
>PRK08185 hypothetical protein; Provisional
Probab=27.36 E-value=2.2e+02 Score=30.63 Aligned_cols=84 Identities=17% Similarity=0.350 Sum_probs=56.5
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---------C-CCCCCHHHHHHHHhccCCCcEEEEecc-CCHHHHHHHHHcCCCe
Q 006649 63 CSQAAVALDILRERKGCFDVVLSDV---------H-MPDMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACD 131 (637)
Q Consensus 63 asng~EALelLre~~~~pDLVIlDI---------~-MPdmDGlELLe~Ir~~~~IPVIILSa~-~d~e~a~kAl~~GA~D 131 (637)
.++.++|.+.++... .|.+-.-+ . -|+.+ ++++++|++..++|+++.-+. ...+..++|++.|+.-
T Consensus 148 ~t~peea~~f~~~Tg--vD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRTG--VDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 457788888887654 78877733 1 25556 899999987678999887665 3456788899999653
Q ss_pred EEeCCCCHHHHHHHHHHHHHHh
Q 006649 132 YLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 132 YLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
.= + -.+|+.++.+.++..
T Consensus 225 iN---i-~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 225 IN---I-SSDMKYAFFKKVREI 242 (283)
T ss_pred EE---e-ChHHHHHHHHHHHHH
Confidence 21 1 245555555555443
No 372
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.27 E-value=5.6e+02 Score=27.76 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=58.3
Q ss_pred cEEEEEe--CCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEeCCCCCC
Q 006649 34 LRVLVVD--DDITCL---RILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDM 92 (637)
Q Consensus 34 irVLIVD--DD~~~r---e~Lk~lL~~~gy~V~~asng~EALel----------------Lre~~~~pDLVIlDI~MPdm 92 (637)
.+|+|+- +.+... +.|...|...++.+.........+.. .......+|+||+ -+.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 3588873 334444 44555555567777665433222110 0111123677776 356
Q ss_pred CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 93 DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 93 DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|| +..++.+. ...+||+-+- .|-.+||.- +.++++..+++++++..+
T Consensus 82 DGT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 82 DGTILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CHHHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCc
Confidence 77 33333332 3568887543 366788884 788999999999887654
No 373
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=27.24 E-value=2.1e+02 Score=28.40 Aligned_cols=67 Identities=19% Similarity=0.107 Sum_probs=42.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~--V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
+|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|==.....--++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999999888876542 32 4455555554432221237999998533332233455555
No 374
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=27.15 E-value=1.3e+02 Score=29.20 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=31.9
Q ss_pred hHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccc
Q 006649 226 SVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEI 271 (637)
Q Consensus 226 k~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~ 271 (637)
..+....+.+++..+--+. +.++.|.-..|++..|||+.+|.+
T Consensus 125 ~~~~~~~l~~~l~~L~~~~---r~v~~l~~~~g~s~~eIA~~lgis 167 (193)
T PRK11923 125 RDEIEGTVHRTIQQLPEDL---RTALTLREFDGLSYEDIASVMQCP 167 (193)
T ss_pred HHHHHHHHHHHHHhCCHHH---hHHHhhHHhcCCCHHHHHHHHCCC
Confidence 3455666777787774432 346677678999999999999987
No 375
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=27.11 E-value=5.4e+02 Score=26.45 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=58.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCC---CHHH----HHHHHhcc
Q 006649 35 RVLVVDDDITCLRILEQMLR---RCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFK----LLEHIGLE 104 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~---~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdm---DGlE----LLe~Ir~~ 104 (637)
.|.+-.-||..+..+..+++ ..++.+...+||.-..+.+. . .|.|.+|+..|.. ..++ .++.++..
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~--~--~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR--D--LDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh--h--CCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 58888999998766666655 45888888888865444433 2 6889999998863 2232 33344322
Q ss_pred CC--CcEEEEeccCCHHHHHHHHHcC-CCeEEeCCCCH
Q 006649 105 MD--LPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIRE 139 (637)
Q Consensus 105 ~~--IPVIILSa~~d~e~a~kAl~~G-A~DYLlKPis~ 139 (637)
.. +.+| ++...+.+.+.+..... ...+++-|...
T Consensus 151 ~~~~vK~V-v~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVV-VFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEE-ECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 22 4444 34555555555443321 22466777654
No 376
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=27.11 E-value=8.6e+02 Score=26.67 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=61.2
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----------CC--H
Q 006649 35 RVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD--G 94 (637)
Q Consensus 35 rVLIVDD----D~~~re~Lk~lL~~~g-y~V--~~asng~EALelLre~~~~pDLVIlDI~MPd-----------mD--G 94 (637)
.++++|- .....+.++.+-+... ..| ..+.+.+.|..+++.. .|.|.+-+.-.. .. +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG---ad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccceeeeccCCCchH
Confidence 5677765 2455555555554432 222 2245777777776543 677764421111 11 3
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
+..+..++...++|||.-.+-.....+.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44556665556799999888889999999999999987653
No 377
>PRK00811 spermidine synthase; Provisional
Probab=27.09 E-value=4.6e+02 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=38.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRC------LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~------gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPd 91 (637)
..-+|.+||=|+.+.+..++.+... .-++. ...++.+.+.. ....+|+||+|..-|.
T Consensus 99 ~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 99 SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 3358999999999999999988642 12232 45566554432 3345999999986553
No 378
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=27.05 E-value=4.7e+02 Score=29.14 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=54.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~-V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I-r~~~~IPVI 110 (637)
-+|..+|-++...+.+++-++..+.. + ....++...+. .....+|+|++|- ++.. .+++..+ +...+-.++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~---~~~~~fDvIdlDP--fGs~-~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR---YRNRKFHVIDIDP--FGTP-APFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH---HhCCCCCEEEeCC--CCCc-HHHHHHHHHhcccCCEE
Confidence 47999999999999999988765432 3 23344444443 3223499999986 4432 3455443 333344688
Q ss_pred EEeccCCHH----HHHHHH-HcCCC
Q 006649 111 MMSADGRVS----AVMRGI-RHGAC 130 (637)
Q Consensus 111 ILSa~~d~e----~a~kAl-~~GA~ 130 (637)
.+|+.+... +...++ ++|+.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~ 168 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGAN 168 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCc
Confidence 888765543 244555 44653
No 379
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=26.99 E-value=7.7e+02 Score=26.05 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=40.5
Q ss_pred ceEEEEeC--CCCCCCHHHHHHHHhccCC-CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 80 FDVVLSDV--HMPDMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 80 pDLVIlDI--~MPdmDGlELLe~Ir~~~~-IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.-+||+|= .|....--.+++.+...+. +.+|+.+ .+......++..-+..+-.+|.+.+++...+++.+++
T Consensus 118 ~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~--~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 118 YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT--TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe--CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence 46888873 2222111134455533222 3334443 3444455666665667777899999999888887654
No 380
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=26.94 E-value=1.3e+02 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.0
Q ss_pred CHHHHHhhhccchhhHHHHHHHHHh
Q 006649 260 TRENVASHLQEINLQKFRLYLKRLN 284 (637)
Q Consensus 260 ti~EVAshVGy~d~qYFrk~FKk~~ 284 (637)
|+.|||+++|+++..--..+++.+.
T Consensus 27 t~rEIa~~~g~~S~~tv~~~L~~Le 51 (65)
T PF01726_consen 27 TVREIAEALGLKSTSTVQRHLKALE 51 (65)
T ss_dssp -HHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCChHHHHHHHHHHH
Confidence 6899999999998888888888774
No 381
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.93 E-value=3.1e+02 Score=27.74 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE------e
Q 006649 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------I 134 (637)
Q Consensus 65 ng~EALelLre~~~~pD-LVIlDI~MP---dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL------l 134 (637)
+..+..+.+.... ++ ++++|+..- ..-.++++++++...++|||+-.+-.+.+.+.+.+..||+..+ .
T Consensus 150 ~~~~~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEELG--AGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 4445555554432 55 666676322 1234678888876678999998888888889999999998854 3
Q ss_pred CCCCHHHHHH
Q 006649 135 KPIREEELKN 144 (637)
Q Consensus 135 KPis~eEL~~ 144 (637)
.|+..+++..
T Consensus 228 ~~~~~~~~~~ 237 (241)
T PRK13585 228 GKFTLEEAIE 237 (241)
T ss_pred CCcCHHHHHH
Confidence 4666555543
No 382
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=26.87 E-value=2.7e+02 Score=32.73 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=52.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng-~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
.++.++++|.|+...+.++ +.++.+...+-. .+.++...-. ..|++++-+.-+. +-..++..+|+ .++.+|
T Consensus 422 ~g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi~--~A~~vv~~~~d~~-~n~~i~~~~r~~~p~~~I 494 (601)
T PRK03659 422 NKMRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAGAE--KAEAIVITCNEPE-DTMKIVELCQQHFPHLHI 494 (601)
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcCCc--cCCEEEEEeCCHH-HHHHHHHHHHHHCCCCeE
Confidence 4567777887776554443 245555432211 2334433322 3677776553322 33455566654 467777
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
|.-+ .+.+...+..+.||+..+.
T Consensus 495 iaRa--~~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 495 LARA--RGRVEAHELLQAGVTQFSR 517 (601)
T ss_pred EEEe--CCHHHHHHHHhCCCCEEEc
Confidence 6644 3456677778899986653
No 383
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.82 E-value=5.7e+02 Score=26.98 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH-HHHHHhccCC
Q 006649 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGLEMD 106 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~----~~g---y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlE-LLe~Ir~~~~ 106 (637)
.|||-|+|..+.-.+...+. ..+ .....+.+.+++.+.+.. .+|.|.+|-.-|+ .+. +.+.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e--~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhccCCC
Confidence 46777776554433332222 222 233578899999988764 3899999875552 222 2333333234
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
+| |..++--+.+.+.+..+.||+.+-
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Is 253 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 55 556667788889999999998654
No 384
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.65 E-value=9.1e+02 Score=26.90 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~M-------PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+..+..+.+.+.. .|+|.++-+. +..+..++.+.++. .++|||. ..-.+.+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666666554 8999997643 22255565555554 5788876 4556778889999999988754
No 385
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=26.63 E-value=8e+02 Score=26.14 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=62.9
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006649 34 LRVLVVDD---DI-TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (637)
Q Consensus 34 irVLIVDD---D~-~~re~Lk~lL~~~gy--~V~~as--ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~ 105 (637)
++++||.+ +. ...+.++++.+..+. .|.... +.++..+.+.. .|+.++-.. .+.-|+-+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 56666653 11 334455555554432 243332 23444444442 477665432 2334666777664 4
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 106 ~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.+|||.... .. ..+.+..|..+++..|-+.++|.+++.+++.
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 678876432 22 3345677888999999999999999988765
No 386
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.62 E-value=4.1e+02 Score=29.09 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006649 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (637)
Q Consensus 34 irVLIVDDD~~~----re~Lk~lL~~~gy~V~~asn---------g~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~ 100 (637)
-|+|||-|.... .+.++..|+..+..+..+.. .+++.+.+++.. +|+||- ..+..-+++.|.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG--CDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcHHHHHHHH
Confidence 389999876543 34577777766666655432 346666666655 899885 456566666665
Q ss_pred H
Q 006649 101 I 101 (637)
Q Consensus 101 I 101 (637)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 5
No 387
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=26.61 E-value=5.2e+02 Score=26.38 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=56.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.++++|+.+.+.. +.+++.+...+ ..|.......+..+.+.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4667777654432 34444444432 234444433344444432 4666664332 223566677664 356776
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
+ +.... ..+.+.. .+++..+-+.+++.+.+..++.
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 4 32222 2222222 5678889999999999988763
No 388
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=26.52 E-value=1.4e+02 Score=26.88 Aligned_cols=22 Identities=18% Similarity=0.005 Sum_probs=11.4
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE
Q 006649 40 DDDITCLRILEQMLRRCLYNVT 61 (637)
Q Consensus 40 DDD~~~re~Lk~lL~~~gy~V~ 61 (637)
|.+......+...|...||.+.
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~ 29 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLF 29 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEE
Confidence 4444444445555555566653
No 389
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.52 E-value=4.4e+02 Score=28.86 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=40.2
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006649 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (637)
Q Consensus 34 irVLIVDDD~~----~re~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~ 100 (637)
-|+|||-|... ..+.+...|+..+..+..+. ...++.+.+++.. +|.||- ..+..-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG--CDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 37898877644 33557777777676655443 2346677777655 898875 456566666665
Q ss_pred H
Q 006649 101 I 101 (637)
Q Consensus 101 I 101 (637)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 390
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=26.50 E-value=5e+02 Score=28.07 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=58.6
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEE-E-----C---CHHHHHHHHHHcCCCceEEEEeCCC-CC-C---CHHHHHHHHh
Q 006649 37 LVVDDDITCLRILEQMLRRCLYNVTT-C-----S---QAAVALDILRERKGCFDVVLSDVHM-PD-M---DGFKLLEHIG 102 (637)
Q Consensus 37 LIVDDD~~~re~Lk~lL~~~gy~V~~-a-----s---ng~EALelLre~~~~pDLVIlDI~M-Pd-m---DGlELLe~Ir 102 (637)
.+..|-....+.++.+.....+.|.. . . +..+..+.+.+. ..|.|.+.-+. ++ . -.++++++++
T Consensus 113 ~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik 190 (321)
T PRK10415 113 ALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVK 190 (321)
T ss_pred HHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHH
Confidence 34555566666666665554443331 1 1 233444444443 37877665432 21 1 2378888888
Q ss_pred ccCCCcEEEEeccCCHHHHHHHHH-cCCCeEE
Q 006649 103 LEMDLPVIMMSADGRVSAVMRGIR-HGACDYL 133 (637)
Q Consensus 103 ~~~~IPVIILSa~~d~e~a~kAl~-~GA~DYL 133 (637)
+..++|||..-.-.+.+.+.++++ .|++...
T Consensus 191 ~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 191 QKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred HhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 777899998888888999999997 5887654
No 391
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=26.50 E-value=1.7e+02 Score=29.89 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=48.3
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 57 gy~V~~asng~EALelLre~~~~pDLVIlDI~M---PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
++.|..-.+-+++.+++... .|+|-+|-.. | .+--+++++|++.. +++|.--++.+....|.++|++ ++
T Consensus 45 ~~~V~ITPT~~ev~~l~~aG---adIIAlDaT~R~Rp-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D-~I 116 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAG---ADIIALDATDRPRP-ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD-II 116 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT----SEEEEE-SSSS-S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S-EE
T ss_pred CCCeEECCCHHHHHHHHHcC---CCEEEEecCCCCCC-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC-EE
Confidence 45677777888888887743 7999999844 5 67788889998655 6777888899999999999964 44
No 392
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=26.47 E-value=93 Score=31.56 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCCCCCHHH--HHHHHhccCCCcE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPDMDGFK--LLEHIGLEMDLPV 109 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlD-I-~MPdmDGlE--LLe~Ir~~~~IPV 109 (637)
|||||+|........+...|...++.+..+......+....+....+|.||+- = ..|..++.+ +++++. ..++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 68999999888888888888888877765543322111122111137876662 1 123323332 333332 246787
Q ss_pred EEE
Q 006649 110 IMM 112 (637)
Q Consensus 110 IIL 112 (637)
+-+
T Consensus 80 LGI 82 (214)
T PRK07765 80 LGV 82 (214)
T ss_pred EEE
Confidence 654
No 393
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.40 E-value=8.2e+02 Score=26.16 Aligned_cols=90 Identities=8% Similarity=0.003 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~----~g--y~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
.|||=|.|-...-.+...+.. .+ ..+ .++.+.+++.+.+.. .+|.|.+|- =|.+.++++.+....
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 477777776555445554432 22 223 578899998888753 389999973 245666666433223
Q ss_pred cE-EEEeccCCHHHHHHHHHcCCCeE
Q 006649 108 PV-IMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 108 PV-IILSa~~d~e~a~kAl~~GA~DY 132 (637)
|+ |..++--+.+.+.+..+.|++..
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~I 257 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYI 257 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEE
Confidence 33 44555678888889999998864
No 394
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=26.38 E-value=4.8e+02 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 95 lELLe~Ir~~~--~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
++.++++++.. ++|||...+-.+.+.+.+++..||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 55677776544 799999999999999999999998753
No 395
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.37 E-value=4.1e+02 Score=27.40 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=61.1
Q ss_pred CccE-EEEEeCCHHHHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHH
Q 006649 32 AGLR-VLVVDDDITCLRILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLE 99 (637)
Q Consensus 32 ~gir-VLIVDDD~~~re~Lk~lL~~~gy~V~~-a--sng~EALelLre~~~~pDLVIlDI~MPd--------mDGlELLe 99 (637)
.|.. |++.|-+....+.+...++..+..... + .+..+.++.+.... .|.|++=-.+|. .+..+.++
T Consensus 103 aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~ 180 (242)
T cd04724 103 AGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIK 180 (242)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHH
Confidence 3444 444455555555566666666654432 2 23345555555433 454443222332 12456777
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 100 ~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
++|+..++||++=.+-.+.+.+.++.++ |+.++.-.
T Consensus 181 ~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 181 RIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred HHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 7877678999887777888889999999 99998863
No 396
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.33 E-value=3.2e+02 Score=29.46 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEE--------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTT--------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 34 irVLIVDDD~~~---re~Lk~lL~~~gy~V~~--------asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
-|+|||-|.... .+.+...|+..+..+.. ..+..++.+.+++.. +|+||. +.+..-+++.+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNG--ADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcC--CCEEEE---ecCchhhHHHHHHH
Confidence 588888876543 33444555555544321 123446667776655 998876 57777788888875
Q ss_pred ccCCCcEEEEe
Q 006649 103 LEMDLPVIMMS 113 (637)
Q Consensus 103 ~~~~IPVIILS 113 (637)
....+|+|.+-
T Consensus 98 ~~~~~P~iaIP 108 (351)
T cd08170 98 DYLGAPVVIVP 108 (351)
T ss_pred HHcCCCEEEeC
Confidence 44567877663
No 397
>PRK04457 spermidine synthase; Provisional
Probab=26.20 E-value=6.8e+02 Score=26.11 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=36.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~-~asng~EALelLre~~~~pDLVIlDI 87 (637)
+.+|.+||=|+.+.+..++.+.... -.+. ...++.+.++. ....+|+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeC
Confidence 4689999999999998888775322 2332 45676666553 234599999996
No 398
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=26.16 E-value=4.9e+02 Score=28.46 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=55.7
Q ss_pred EEEEeCCHHHHHHHHHHHH-------hCCC---eEEEECCHHHHHHHHHH---cCCCceEEEEeCC--CCCC---CHHHH
Q 006649 36 VLVVDDDITCLRILEQMLR-------RCLY---NVTTCSQAAVALDILRE---RKGCFDVVLSDVH--MPDM---DGFKL 97 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~-------~~gy---~V~~asng~EALelLre---~~~~pDLVIlDI~--MPdm---DGlEL 97 (637)
|||=|.|-...-.+...+. ...+ ...++.+.+++.+.+.. .+..+|+|++|=. -|+. +--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 6666666544433333332 2222 23578899999998871 1123899999965 2221 22223
Q ss_pred HHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCe
Q 006649 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 98 Le~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~D 131 (637)
.+.++.......|-.|+--+.+.+.+-...|++-
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCE
Confidence 3333322222347778888888888888888763
No 399
>PRK05670 anthranilate synthase component II; Provisional
Probab=26.14 E-value=86 Score=30.83 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=33.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
|||+|-...+-..+.+.|.+.++.+..........+.+.... ||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALN--PDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCC--CCEEEE
Confidence 899999999999999999988888766544321122223333 787776
No 400
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=26.11 E-value=2e+02 Score=30.23 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCceEEEEeC--CC--CC---CCHHHHHHHHhccCCCcEEEEecc-CC-----HHHHHHHHHcCCCe-
Q 006649 66 AAVALDILRERKGCFDVVLSDV--HM--PD---MDGFKLLEHIGLEMDLPVIMMSAD-GR-----VSAVMRGIRHGACD- 131 (637)
Q Consensus 66 g~EALelLre~~~~pDLVIlDI--~M--Pd---mDGlELLe~Ir~~~~IPVIILSa~-~d-----~e~a~kAl~~GA~D- 131 (637)
...|++.+++. +..+|+|+.- .. |- .--+..+..+++..++||++=+.+ .. ......|+.+||++
T Consensus 148 ~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 148 WLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred HHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 34677777654 3478999884 22 21 112444555665568998884444 22 45566899999988
Q ss_pred EEeCCCCHH
Q 006649 132 YLIKPIREE 140 (637)
Q Consensus 132 YLlKPis~e 140 (637)
+|.|-++++
T Consensus 227 ~iE~H~t~d 235 (260)
T TIGR01361 227 MIEVHPDPE 235 (260)
T ss_pred EEEeCCCcc
Confidence 777766544
No 401
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.05 E-value=7.6e+02 Score=29.38 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=59.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.++++||.|-+. ++.++.++...+. .|.......+..+.+.. .|+.++=-. -+.-|..+++.+. ..+|||
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~EGfp~vlLEAMA--~GlPVV 500 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YEGLPNVLIEAQM--VGVPVI 500 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-ccCccHHHHHHHH--hCCCEE
Confidence 356677766543 3455555555432 34444443343333332 577766322 2334666777664 467888
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq 147 (637)
..- .. ...+.+..|..+|+..|-+.+.|.+.+.
T Consensus 501 ATd-vG---G~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 501 STP-AG---GSAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred EeC-CC---CcHHHcccCCcEEEECCCChhhHHHHHH
Confidence 433 22 2345567899999999998888776654
No 402
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.77 E-value=4.1e+02 Score=29.37 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=41.6
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006649 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (637)
Q Consensus 34 irVLIVDDD~~----~re~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~ 100 (637)
-|+|||-|... ..+.+...|+..+..+..+. +.+++.+.+++.. +|.||- ..+..-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 48999987633 34467777777666554443 3457777777765 999885 456666666665
Q ss_pred H
Q 006649 101 I 101 (637)
Q Consensus 101 I 101 (637)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 5
No 403
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.66 E-value=3.9e+02 Score=28.74 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=54.8
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 36 VLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~----~g--y-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
|||=|.|-.+.-.+...+.. .. . ...++.+.+++.+.++.. +|+|.+|=.-|+ ++-+.+......-
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~g---aDiI~LDn~s~e----~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALELG---VDAVLLDNMTPD----TLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcC---CCEEEeCCCCHH----HHHHHHHHhCCCc
Confidence 55555554443334444432 22 2 335889999999998643 899999965442 3333332222222
Q ss_pred EEEEeccCCHHHHHHHHHcCCCe
Q 006649 109 VIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~D 131 (637)
+|..|+--+.+.+.+-.+.|++-
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~ 262 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDL 262 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCE
Confidence 37788888888888888888864
No 404
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.57 E-value=6.4e+02 Score=25.71 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=41.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHH
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHI 101 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy--~V~-~asng~EALelLre~~~~pDLVIlDI~MPdm-DGlELLe~I 101 (637)
+.+|..||=.+...+..++.+...+. .+. ...+..+..... . ..+|+|++..-+..+ +-.++++.+
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~--~~fD~V~~~~vl~~~~~~~~~l~~~ 135 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-E--TPVDLILFHAVLEWVADPKSVLQTL 135 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-C--CCCCEEEehhHHHhhCCHHHHHHHH
Confidence 57899999999999988888876543 233 344555432222 2 349999987544322 334556665
No 405
>CHL00101 trpG anthranilate synthase component 2
Probab=25.54 E-value=82 Score=31.15 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=34.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
|||||....+-..|.+.|+..+..+..+......++.+.... ||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLN--IRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCC--CCEEEE
Confidence 899999999999999999998888877664432222233223 887775
No 406
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=25.50 E-value=1.8e+02 Score=31.90 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=51.0
Q ss_pred ECCHHHHHHHHH-HcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCe
Q 006649 63 CSQAAVALDILR-ERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 63 asng~EALelLr-e~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~D 131 (637)
..|..||+..+. ...+.-|+|++- |.+-=+++++.++...++||...-...++..++.|.+.|..|
T Consensus 224 p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 224 PANRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 346667776554 233457988875 677778999999888889999988888898888999998765
No 407
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=25.45 E-value=7.9e+02 Score=26.08 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=46.4
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 60 V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..++.+.+++.+.++. ..|.|.+|-.-|. +--++.+.++.. +++|++. ++--+.+.+.+..+.|++....
T Consensus 187 gVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~i~i~A-sGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPPVLLAA-AGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCCceEEE-ECCCCHHHHHHHHHcCCcEEEE
Confidence 3578899999888753 3899999965453 212344445433 4676554 4455778888999999987643
No 408
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=25.38 E-value=4.3e+02 Score=34.16 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=65.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc
Q 006649 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE 104 (637)
Q Consensus 34 irVLIV----DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPd-mDG-lELLe~Ir~~ 104 (637)
-+|++. |-|.+=...+.-+|+..||+|+... ..++.++.+++.. +|+|.+-..|.. +.. .++++.+++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 367777 6777777778888888899997654 4577888888776 999999877753 443 3466777543
Q ss_pred -CCCcEEEEeccCCHHH-HHH-HHH-cCCCeEEeCC
Q 006649 105 -MDLPVIMMSADGRVSA-VMR-GIR-HGACDYLIKP 136 (637)
Q Consensus 105 -~~IPVIILSa~~d~e~-a~k-Al~-~GA~DYLlKP 136 (637)
.++||++=-+.-+... +.+ +-. .|++.|-.-.
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 5677766544433322 111 011 2888776543
No 409
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=25.37 E-value=2.1e+02 Score=26.96 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=39.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
.+.+|.++.+.. ..+.+...... ...+..+.+..++++++...+ .|.++.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g~--~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSGR--IDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcCC--eeeeeccc
Confidence 556899888855 34445554433 567778999999999998766 99999975
No 410
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.32 E-value=2.5e+02 Score=32.95 Aligned_cols=57 Identities=19% Similarity=0.401 Sum_probs=38.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
+|+||+ -+.||- +++..+. ..++||+-+ ..|=.+||. .++++++...++++++..+.
T Consensus 349 ~dlvi~----lGGDGT-~L~aa~~~~~~~~PilGi-------------n~G~lGFL~-~~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 349 ISHIIS----IGGDGT-VLRASKLVNGEEIPIICI-------------NMGTVGFLT-EFSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhcCCCCCEEEE-------------cCCCCCcCc-ccCHHHHHHHHHHHHcCCce
Confidence 566665 355663 4444432 246787744 346678888 78999999999999876543
No 411
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=25.30 E-value=5.1e+02 Score=28.22 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=41.5
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006649 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (637)
Q Consensus 34 irVLIVDDD~~~r-----e~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe 99 (637)
-|+|||-|..... +.+...|...+..+..+. +..++.+.+++.. +|+||. ..+..-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 5899998876533 557777877666655443 2346777777665 898876 45666666666
Q ss_pred HH
Q 006649 100 HI 101 (637)
Q Consensus 100 ~I 101 (637)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 44
No 412
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.28 E-value=6.2e+02 Score=28.89 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=31.1
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~~r---e~Lk~lL~~~gy~V~~as---ng----~EALelLre~~~~pDLVIlDI 87 (637)
.|.+|+||+-|+.-. +.|+.+-+..+..+.... +. .++++.++.. .+|+||+|.
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDT 190 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDT 190 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 467999999886432 333333333344444332 22 2455555543 399999998
No 413
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.24 E-value=2.2e+02 Score=31.03 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=41.4
Q ss_pred HHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCCe------EEeC-CCCHHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACD------YLIK-PIREEELKNIWQHVVRK 152 (637)
Q Consensus 95 lELLe~Ir~~~--~IPVIILSa~~d~e~a~kAl~~GA~D------YLlK-Pis~eEL~~~Lq~Vlrk 152 (637)
++.++++++.- ++|||...+-.+.+.+.+.+..||+. ++.+ |.-..++++-+++.+++
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 34555665443 79999999999999999999999874 4454 66666666666555543
No 414
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.18 E-value=2.6e+02 Score=29.25 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHH-
Q 006649 47 RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI- 125 (637)
Q Consensus 47 e~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl- 125 (637)
..|.++.+..|.......-..++++.+.+. ++-..-|--.+.+-+.|++++.+ .+.|||+=|+-.+.+++.+|+
T Consensus 59 ~~L~~~~~~~gi~f~stpfd~~s~d~l~~~----~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPFDEESVDFLEEL----GVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAVE 133 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE-SHHHHHHHHHH----T-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEECCCCHHHHHHHHHc----CCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHH
Confidence 345666666677665444456777777653 44455566667788999999965 678999988888777666554
Q ss_pred ---HcCCCeEEe------CCCCHHHHH
Q 006649 126 ---RHGACDYLI------KPIREEELK 143 (637)
Q Consensus 126 ---~~GA~DYLl------KPis~eEL~ 143 (637)
+.|..+..+ -|..++++.
T Consensus 134 ~~~~~~~~~l~llHC~s~YP~~~e~~N 160 (241)
T PF03102_consen 134 VLREAGNEDLVLLHCVSSYPTPPEDVN 160 (241)
T ss_dssp HHHHHCT--EEEEEE-SSSS--GGG--
T ss_pred HHHhcCCCCEEEEecCCCCCCChHHcC
Confidence 345554332 255566654
No 415
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.09 E-value=5.2e+02 Score=26.93 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=36.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g-----y~V~-~asng~EALelLre~~~~pDLVIlDI~MPd 91 (637)
.-+|.+||-++.+.+..++.+.... -.+. ...++.+.++. ....+|+||+|..-|.
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~---~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD---TENTFDVIIVDSTDPV 157 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---CCCCccEEEEeCCCCC
Confidence 3579999999999888888775421 1222 33555555443 2345999999985443
No 416
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.07 E-value=7.6e+02 Score=25.59 Aligned_cols=91 Identities=11% Similarity=0.151 Sum_probs=54.2
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHHhcc--CCCc--EEEEeccCCHHHHHHH
Q 006649 51 QMLRRCL-YNVTTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP--VIMMSADGRVSAVMRG 124 (637)
Q Consensus 51 ~lL~~~g-y~V~~asng~EALelLre~~-~~pDLVIlDI~MPdmDGlELLe~Ir~~--~~IP--VIILSa~~d~e~a~kA 124 (637)
..|.+.+ .-|....+.++|++.++... ..+. ++.+.|-.-+.++.++.|+.. ...| +|-.-.--+.+.+.+|
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a 87 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALY 87 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHH
Confidence 3344433 45566778888877665421 1233 555656555688888877422 1122 3334445678889999
Q ss_pred HHcCCCeEEeCCCCHHHHHH
Q 006649 125 IRHGACDYLIKPIREEELKN 144 (637)
Q Consensus 125 l~~GA~DYLlKPis~eEL~~ 144 (637)
++.||. |++-|.-..++.+
T Consensus 88 ~~aGA~-FiVsP~~~~~v~~ 106 (222)
T PRK07114 88 IQLGAN-FIVTPLFNPDIAK 106 (222)
T ss_pred HHcCCC-EEECCCCCHHHHH
Confidence 999996 6666655444443
No 417
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.05 E-value=3.8e+02 Score=27.52 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=52.0
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 63 CSQAAVALDILRERKGCFDVVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 63 asng~EALelLre~~~~pDLVIlDI~MP---dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
..+..+..+.+.... .-.+.|.|+.-- ...-+++++++++..++||++--+-.+.+.+.+++..|++..++-
T Consensus 29 ~~d~~~~a~~~~~~G-~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 29 AGDPVELAKRYNEEG-ADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred cCCHHHHHHHHHHcC-CCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 346666666665532 235778888642 233467888887767899999888999999999999998876553
No 418
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=24.97 E-value=8.6e+02 Score=25.92 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=55.4
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 33 GLRVLVV-DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 33 girVLIV-DDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
.++++++ .++...++.++++....+-.|....-.++..+++.. -|+++++ + -|+-+++.+. ..+|+|+
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~--gg~t~~EA~a--~g~PvI~ 298 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---P--GGITLSEAAA--LGVPVIL 298 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---C--CchHHHHHHH--hCCCEEE
Confidence 4566554 555555666666665433234444433333344432 5887763 2 2666666653 4678776
Q ss_pred EeccC--CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 112 MSADG--RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 112 LSa~~--d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
..... +.+.+....+.|+ ...+-+.++|.+.+.+++.
T Consensus 299 ~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 299 YKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 43222 2222222234454 3335678888888887764
No 419
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=24.94 E-value=4.6e+02 Score=27.89 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=71.5
Q ss_pred CccEEEEEeCCHHH----HH--HHHHHHHhCCCeEEEECCHH--HHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHH
Q 006649 32 AGLRVLVVDDDITC----LR--ILEQMLRRCLYNVTTCSQAA--VALDILRERKGCFDVVLSDVHMPDMDG-----FKLL 98 (637)
Q Consensus 32 ~girVLIVDDD~~~----re--~Lk~lL~~~gy~V~~asng~--EALelLre~~~~pDLVIlDI~MPdmDG-----lELL 98 (637)
..+|+=|+-|+... .+ .-.+.|-+.||.|....+.+ -|- .+++-- =..++-+--|-.+| -..+
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~ar-rLee~G---caavMPl~aPIGSg~G~~n~~~l 174 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLAR-RLEEAG---CAAVMPLGAPIGSGLGLQNPYNL 174 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHH-HHHhcC---ceEeccccccccCCcCcCCHHHH
Confidence 45777777665422 12 22334555689887544433 333 333321 23344444443333 3456
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHH
Q 006649 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (637)
Q Consensus 99 e~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK-----Pis~eEL~~~Lq~Vlr 151 (637)
+.|+++.++|||+=.+-.....+..+++.|++..|+- --++-.+.+++.+++.
T Consensus 175 ~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 175 EIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 6677777999999999999999999999999998864 3355566666665543
No 420
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=24.91 E-value=6.9e+02 Score=24.84 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=35.7
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|..+++.+. ..+|||. +.... ..+.+..+..+++.++-+.+++.+++.+++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~-~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVA-TDVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEE-ecCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 444455442 4677764 33222 34456777888999999999999999888654
No 421
>PLN02335 anthranilate synthase
Probab=24.83 E-value=82 Score=32.17 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=33.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
..+|||||..-.+-..|.+.|+..++.+.++......++.+.... ||.||+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~--~d~iVi 68 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKN--PRGVLI 68 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcC--CCEEEE
Confidence 358999997667777888999888887776654211123233333 777666
No 422
>PLN02823 spermine synthase
Probab=24.83 E-value=1.5e+02 Score=32.45 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=37.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006649 34 LRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~-----gy~V~-~asng~EALelLre~~~~pDLVIlDI~MP 90 (637)
.+|.+||=|+.+.+..++.+... .-.+. ...++...+ +.....+|+||+|+--|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 58999999999999999888542 12232 455665555 33344599999997544
No 423
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.79 E-value=3.6e+02 Score=29.00 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=39.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+|+||+ -+.||- +++..+. ..++||+-+- .|-.+||. .++++++...+++++++.+
T Consensus 69 ~D~vi~----lGGDGT-~L~aa~~~~~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 69 CDLVAV----LGGDGT-FLSVAREIAPRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEGKY 126 (296)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhcccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcCCc
Confidence 687776 356773 3444432 3578888654 46678998 4899999999999887653
No 424
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.77 E-value=3.5e+02 Score=27.91 Aligned_cols=68 Identities=6% Similarity=0.003 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+..+.++.+++.. .=.+|++|+.--++ .| +++++.++... .++|.--+-.+.+...++.+.|+++.++
T Consensus 147 ~~~e~~~~l~~~g-~~~ii~tdI~~dGt~~G~d~el~~~~~~~~-~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNELE-LLGIIFTYISNEGTTKGIDYNVKDYARLIR-GLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHhcC-CCEEEEecccccccCcCcCHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3446666665543 13899999977664 44 46777776543 4566655567778888888899998765
No 425
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.60 E-value=8e+02 Score=25.43 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc----CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD----GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~----~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vlr 151 (637)
.|++++.- + +..+++.+. ..+|+|+.... +......+.+..+-.+++..+- +.++|.++++.++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam~--~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA--LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH--hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 57777522 1 344555553 56888875321 1111122333333457888775 89999998887764
No 426
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=24.59 E-value=2.4e+02 Score=29.22 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=42.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHH-cCCCceEEEEeCCCCC
Q 006649 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRE-RKGCFDVVLSDVHMPD 91 (637)
Q Consensus 29 ~fp~girVLIVDDD~~~re~Lk~lL~~~gy~--V~~asng~EALelLre-~~~~pDLVIlDI~MPd 91 (637)
..|..-++.-||-++...+.-++.+++.+.. |..... -++++.+.. ....||+|++|..=+.
T Consensus 80 ~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~ 144 (219)
T COG4122 80 ALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKAD 144 (219)
T ss_pred hCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhh
Confidence 3453449999999999999999999988642 333331 344444443 2345999999986443
No 427
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=24.58 E-value=2.8e+02 Score=32.10 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=38.1
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 80 FDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 80 pDLVIlDI~MPd-mDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.|+|.+|.--.. ..-++++++||.. ++++|| ...-.+.+.+..+++.||+....
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 899999994222 1234788888764 456655 34456778899999999997643
No 428
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=24.58 E-value=7.7e+02 Score=27.32 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHH----hc-----cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006649 88 HMPDMDGFKLLEHI----GL-----EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (637)
Q Consensus 88 ~MPdmDGlELLe~I----r~-----~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~e 140 (637)
+..+.|-.|.++.+ ++ ..++.+|++++.+..+..+++++.|.+-.++|--+..
T Consensus 105 RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~~~~p~~~~n~~~~ 166 (337)
T COG2247 105 RIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKEGIVPVILKNTSIL 166 (337)
T ss_pred EecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHHHHHHHHhcCcceeEecccccc
Confidence 44567888888776 21 1246899999999888889999999999999876554
No 429
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=24.49 E-value=2.7e+02 Score=29.67 Aligned_cols=84 Identities=18% Similarity=0.327 Sum_probs=57.0
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---C-----CCCCCHHHHHHHHhccCCCcEEEEec-cCCHHHHHHHHHcCCCeEE
Q 006649 63 CSQAAVALDILRERKGCFDVVLSDV---H-----MPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 63 asng~EALelLre~~~~pDLVIlDI---~-----MPdmDGlELLe~Ir~~~~IPVIILSa-~~d~e~a~kAl~~GA~DYL 133 (637)
+++.++|.+.+++.. +|.+-..+ + -|.. +++++++|++..++|+++.-+ .-+.+.+.++++.|++..=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 558889988887544 78777542 1 1333 489999998777899887763 3456678899999998764
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 006649 134 IKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 134 lKPis~eEL~~~Lq~Vlrk~ 153 (637)
.- .+|+.++.+.+++.
T Consensus 229 v~----T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKV 244 (282)
T ss_pred EC----cHHHHHHHHHHHHH
Confidence 42 35555555555443
No 430
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.34 E-value=1.7e+02 Score=29.20 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=34.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
|||+|||-.--....+.+.|++.++++....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 68999999988889999999999998887765322 21 3888887
No 431
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=24.33 E-value=7.4e+02 Score=25.63 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhCCCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHH
Q 006649 33 GLRVLVVDDDI----TCLRILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHI 101 (637)
Q Consensus 33 girVLIVDDD~----~~re~Lk~lL~~~gy~V--~~asng~EALelLre~~~~pDLVIlDI~MP-----dmDGlELLe~I 101 (637)
.+.+-|-|... .....+-..|+..|+.+ .-+.++-..+..+.... ||.|=+|-.+- +.....+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHH
Confidence 44444555443 12333444455667665 46889999999998876 99999986442 22334556655
Q ss_pred ---hccCCCcEEEEeccCCHHHHHHHHHcCCC----eEEeCCCCHHHHHHHHH
Q 006649 102 ---GLEMDLPVIMMSADGRVSAVMRGIRHGAC----DYLIKPIREEELKNIWQ 147 (637)
Q Consensus 102 ---r~~~~IPVIILSa~~d~e~a~kAl~~GA~----DYLlKPis~eEL~~~Lq 147 (637)
.+..++.|| .-+-.+.+......++|++ .|+.||...+++...+.
T Consensus 199 v~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 199 VALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 233455555 4455667777778888987 36889999877766554
No 432
>PRK10060 RNase II stability modulator; Provisional
Probab=24.29 E-value=5.7e+02 Score=30.20 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=67.2
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHHHh---ccCCCcEEEEeccCC
Q 006649 48 ILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIG---LEMDLPVIMMSADGR 117 (637)
Q Consensus 48 ~Lk~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIlDI~M----P-dmDGlELLe~Ir---~~~~IPVIILSa~~d 117 (637)
.+...|+..|+.+. -+.++-..+..+.... +|.|=+|-.. . +.....+++.|- ...++.|| ..+-.+
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVEt 621 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVET 621 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCCC
Confidence 33455666688765 4777888888888776 9999999522 2 233455666552 33566655 456677
Q ss_pred HHHHHHHHHcCCCe----EEeCCCCHHHHHHHHHH
Q 006649 118 VSAVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (637)
Q Consensus 118 ~e~a~kAl~~GA~D----YLlKPis~eEL~~~Lq~ 148 (637)
.+....+.+.|++. |+.||...+++...+++
T Consensus 622 ~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 622 AKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred HHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 77777788889863 68899999999876543
No 433
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.24 E-value=5e+02 Score=27.60 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=57.2
Q ss_pred cEEEEE--eCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHH--HHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 34 LRVLVV--DDDITCLRILEQMLRR--CLYNVTTCSQAAVALDIL--RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 34 irVLIV--DDD~~~re~Lk~lL~~--~gy~V~~asng~EALelL--re~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
|||.|+ .+.+...+.+.++.+| .++.+.......+.+... ......+|+||+ -+.||- +++..+.. ..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~L~a~~~~-~~ 74 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELLPPDWEIIYEMEAAKALGMDGLDIEEINADVIIT----IGGDGT-ILRTLQRA-KG 74 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHhcCCEEEEechhhhhcCcccCcccccCCCEEEE----EcCcHH-HHHHHHHc-CC
Confidence 567776 3445555555554443 356655443322222100 000113677776 356774 45555432 34
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
||+-+- .|-.+||. .++++++...++++++..+
T Consensus 75 PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 75 PILGIN-------------MGGLGFLT-EIEIDEVGSAIKKLIRGEY 107 (271)
T ss_pred CEEEEE-------------CCCCccCc-ccCHHHHHHHHHHHHcCCc
Confidence 877543 36678888 6899999999999887654
No 434
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=24.20 E-value=3.7e+02 Score=25.00 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=44.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC---C-Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 35 RVLVVDDDITCLRILEQMLRRC---L-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~---g-y~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
-+.||.||+..+..|+.--... + .. |+-+ ...++++.+++.. |++ .|--.+|-++.+++.. .+-||
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV-~t~~~l~~Lr~la--pgl-----~l~P~sgddLa~rL~l-~hYPv 96 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNV-ETAAALQRLRALA--PGL-----PLLPVSGDDLAERLGL-RHYPV 96 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEec-CCHHHHHHHHHHc--CCC-----cccCCCHHHHHHHhCC-CcccE
Confidence 5899999999998887765432 2 11 1223 2356677777654 554 3445589999999853 45576
Q ss_pred EEE
Q 006649 110 IMM 112 (637)
Q Consensus 110 IIL 112 (637)
++.
T Consensus 97 Lit 99 (105)
T TIGR03765 97 LIT 99 (105)
T ss_pred EEe
Confidence 653
No 435
>PRK09940 transcriptional regulator YdeO; Provisional
Probab=24.09 E-value=85 Score=33.12 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=26.1
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
...+++++|+++|.+. .+|.+.||+. |+|+.
T Consensus 149 ~~~tl~~LA~~~gmS~-s~l~R~FK~~-G~T~~ 179 (253)
T PRK09940 149 HPWKLKDICDCLYISE-SLLKKKLKQE-QTTFS 179 (253)
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHHc-CCCHH
Confidence 3589999999998665 6899999997 88774
No 436
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=24.06 E-value=2.4e+02 Score=30.25 Aligned_cols=89 Identities=10% Similarity=0.141 Sum_probs=50.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHH-HcCCCceEEEE-eCCCCCC--CHHHHHHHHhccCCC
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILR-ERKGCFDVVLS-DVHMPDM--DGFKLLEHIGLEMDL 107 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~as--ng~EALelLr-e~~~~pDLVIl-DI~MPdm--DGlELLe~Ir~~~~I 107 (637)
..|++++|.......+. .+.- ...+..+. +..+..+.+. .....-+++++ |.-+|.. .|..+++.++. .++
T Consensus 38 aDvI~~edtr~t~~ll~-~~~i-~~~~~~~~~~~~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~-~gi 114 (287)
T PRK14994 38 VDLIAAEDTRHTGLLLQ-HFAI-NARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCRE-AGI 114 (287)
T ss_pred CCEEEEeCCcchHHHHh-hcCC-CCEEEEccCCCHHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHHHH-CCC
Confidence 46889998875543322 2211 11222222 2333333222 22223587777 9999974 59999998875 378
Q ss_pred cEEEEeccCCHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGI 125 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl 125 (637)
+|.++-+-+.+..+..+.
T Consensus 115 ~v~vIPGiSA~~aA~a~s 132 (287)
T PRK14994 115 RVVPLPGPCAAITALSAA 132 (287)
T ss_pred CEEEeCCHHHHHHHHHHc
Confidence 888887766554444333
No 437
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=24.01 E-value=3.4e+02 Score=26.86 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=32.7
Q ss_pred CceEEEEeCCCCCC-------CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC-CCe
Q 006649 79 CFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACD 131 (637)
Q Consensus 79 ~pDLVIlDI~MPdm-------DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~G-A~D 131 (637)
..|.+++|..-++. -++++++.+. ..+|+++..+ -+.+.+.++++.+ ++.
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGG-I~~~Nv~~~i~~~~~~g 177 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGG-LTPDNVAEAIRLVRPYG 177 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECC-CChHHHHHHHHhcCCCE
Confidence 47889999865431 2456666654 4678776554 4777778888777 544
No 438
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=23.73 E-value=1.3e+02 Score=31.88 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=39.7
Q ss_pred CHHHHHHHHh-ccCCCcEEEEeccC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006649 93 DGFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (637)
Q Consensus 93 DGlELLe~Ir-~~~~IPVIILSa~~------d~e~a~kAl~~GA~DYLlKPis~eEL~~~L 146 (637)
+.+++++++| ...++|+|+||=++ -.....+|-+.|+++.|+--+..+|-....
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~ 133 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELR 133 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHH
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHH
Confidence 3577888888 77899999998543 334677888999999999877776654433
No 439
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=23.68 E-value=6.8e+02 Score=26.55 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=46.7
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 63 CSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 63 asng~EALelLre~~~~pDLVIlDI~M-----PdmDGlELLe~Ir~~--~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+.+.++|..+.+. ..|.|.+.-+- .+...++++.++++. .++|||.-.+-.+...+.+++.+||+....
T Consensus 180 v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 180 ILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred cCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3455555544432 37877775432 123456777777543 269999988899999999999999998644
No 440
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=23.64 E-value=2.4e+02 Score=28.97 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCceEEEEeCC-----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 006649 69 ALDILRERKGCFDVVLSDVH-----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 69 ALelLre~~~~pDLVIlDI~-----MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~k 123 (637)
|.+++... .+||||+|=- ..-.+--|+++.|+..|..-=||+|++.-.....+
T Consensus 114 a~~~l~~~--~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 114 AKEALADG--KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred HHHHHhCC--CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 33444443 4999999942 22345556777776666655677788766554443
No 441
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=23.55 E-value=1.3e+02 Score=26.87 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHH
Q 006649 232 QFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLY 279 (637)
Q Consensus 232 tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~ 279 (637)
.+..+|+++. ....+.||++.=..+++.++||..+||+...||+..
T Consensus 47 ei~~~I~~l~--d~~~r~iL~~~Yi~~~~~~~I~~~l~~S~~t~yr~~ 92 (100)
T PF07374_consen 47 EIRRAINKLE--DPDERLILRMRYINKLTWEQIAEELNISRRTYYRIH 92 (100)
T ss_pred HHHHHHHHcc--ChhHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3556677654 222245776555678999999999999998888865
No 442
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=23.45 E-value=4e+02 Score=28.39 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=48.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH--HHHHHHhccCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF--KLLEHIGLEMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~-V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGl--ELLe~Ir~~~~IP 108 (637)
+.+|.-||-++...+..++-++..+.. +. .+.+..+.... ....+|+|++| |-..|+ ++++.|.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 458999999999988888887765542 32 45565554321 12249999999 333443 5666664332234
Q ss_pred EEEEeccCC
Q 006649 109 VIMMSADGR 117 (637)
Q Consensus 109 VIILSa~~d 117 (637)
||.+|....
T Consensus 269 ivyvsc~p~ 277 (315)
T PRK03522 269 ILYSSCNAQ 277 (315)
T ss_pred EEEEECCcc
Confidence 666665443
No 443
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=23.33 E-value=7.4e+02 Score=24.57 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=35.0
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|..+++.+. ..+|||. |.... ..+.+..|..+++..+-+.+++.+.+..++.
T Consensus 277 ~~~~~Ea~~--~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA--MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH--cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 555566553 4578775 33222 2344566778899999999999999888654
No 444
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=23.19 E-value=1.3e+02 Score=21.81 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLY 279 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~ 279 (637)
+.++.+.-..|++..+||+.+|.+-..-++..
T Consensus 16 ~~~~~~~~~~~~~~~~ia~~~~~s~~~i~~~~ 47 (55)
T cd06171 16 REVILLRFGEGLSYEEIAEILGISRSTVRQRL 47 (55)
T ss_pred HHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34556655699999999999998776655444
No 445
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=23.16 E-value=5.4e+02 Score=25.31 Aligned_cols=68 Identities=7% Similarity=-0.026 Sum_probs=49.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..+.+.+|+.+.++. ..|.|-++- .+.. |.++++.++.. +++|++.+.+- +.+.+.+.++.|++..-.
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v 170 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGG 170 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEE
Confidence 356688888888753 379998853 3333 89999998754 46887776655 788899999999876544
No 446
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=23.14 E-value=6e+02 Score=29.56 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHH---cCCCceEEEEeCC----CCCCC-HHHHHHHHhccCCCcEEEEeccCC
Q 006649 48 ILEQMLRRCLYNVT--TCSQAAVALDILRE---RKGCFDVVLSDVH----MPDMD-GFKLLEHIGLEMDLPVIMMSADGR 117 (637)
Q Consensus 48 ~Lk~lL~~~gy~V~--~asng~EALelLre---~~~~pDLVIlDI~----MPdmD-GlELLe~Ir~~~~IPVIILSa~~d 117 (637)
.+...|+..|+.+. .+..+-..+..++. .. ||.|=+|-. ++... -.+.+..+....++.|| ..+-++
T Consensus 543 ~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~--~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~vi-aegVEt 619 (660)
T PRK11829 543 RLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLP--IHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVM-AEGVET 619 (660)
T ss_pred HHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCC--CcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEE-EecCCC
Confidence 34445666687765 47777788888877 65 999999842 22211 12222233333456544 566777
Q ss_pred HHHHHHHHHcCCC----eEEeCCCCHHHHHHHH
Q 006649 118 VSAVMRGIRHGAC----DYLIKPIREEELKNIW 146 (637)
Q Consensus 118 ~e~a~kAl~~GA~----DYLlKPis~eEL~~~L 146 (637)
.+....+.+.|++ .|+.||...+++....
T Consensus 620 ~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 620 EEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred HHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 7778888899996 3789999999886544
No 447
>PRK13695 putative NTPase; Provisional
Probab=22.96 E-value=5e+02 Score=24.78 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCceEEEEeC--CCCCCCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCC--CeEEeCCCCHHHHHHHHHHH
Q 006649 78 GCFDVVLSDV--HMPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGA--CDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 78 ~~pDLVIlDI--~MPdmDG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA--~DYLlKPis~eEL~~~Lq~V 149 (637)
..+|++|+|= .+...+. .+++..+- ....|+|+++.........+.+..-. .=|-..|-+.++|...+...
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 3599999996 2322221 23333332 35678887776543333333333322 33555677778877766553
No 448
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=22.89 E-value=2.8e+02 Score=31.76 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPd-mDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
.++.+.+.+.. .|+|.+|..-.. .+-+++++.|+.. +++|||+ -.-.+.+.+..+++.||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 34555555444 899999975333 3456678888755 4788776 556778889999999997653
No 449
>PRK14967 putative methyltransferase; Provisional
Probab=22.88 E-value=7.6e+02 Score=24.68 Aligned_cols=47 Identities=23% Similarity=0.099 Sum_probs=31.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEe
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSD 86 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlD 86 (637)
+|..+|-++...+..+..+...+..+. ...+..+ .+.. ..+|+|++|
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~n 108 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSN 108 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEEC
Confidence 899999999888887777766554443 2334333 2222 349999998
No 450
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=22.72 E-value=2.6e+02 Score=27.61 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 95 lELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
-+.++.+++. +..+.|.+= -.+.+.+.+|++.|++-..+--+++++++++++.+.
T Consensus 67 ~~av~~~~~~~~~~~~I~VE-v~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEVE-VENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEEE-ESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEE-cCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 4566666543 444434443 345778999999999999999999999999998773
No 451
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.57 E-value=7.7e+02 Score=26.34 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=55.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE-E-----C---CHHHHHHHHHHcCCCceEEEEeCCCCC--C---CHHHHHHHHhcc
Q 006649 39 VDDDITCLRILEQMLRRCLYNVTT-C-----S---QAAVALDILRERKGCFDVVLSDVHMPD--M---DGFKLLEHIGLE 104 (637)
Q Consensus 39 VDDD~~~re~Lk~lL~~~gy~V~~-a-----s---ng~EALelLre~~~~pDLVIlDI~MPd--m---DGlELLe~Ir~~ 104 (637)
..+-....+.++.+-+..++.|.. . . +..+..+.+++.. .|.|.+.-+... . --++.++++++.
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G--~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG--AQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC--CCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 344455555555554444444321 1 1 1234444454433 787776543221 1 136778888776
Q ss_pred CCCcEEEEeccCCHHHHHHHH-HcCCCeEE
Q 006649 105 MDLPVIMMSADGRVSAVMRGI-RHGACDYL 133 (637)
Q Consensus 105 ~~IPVIILSa~~d~e~a~kAl-~~GA~DYL 133 (637)
.++|||....-.+.+.+.+++ ..||+...
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 779999988889999999999 46777643
No 452
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=22.51 E-value=8.5e+02 Score=24.98 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=57.3
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCC--CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCC---
Q 006649 63 CSQAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI--- 137 (637)
Q Consensus 63 asng~EALelLre~~~~pDLVIlDI~MP--dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi--- 137 (637)
..+..+..+.+.+.. .-.|.|+|++-. ..+-++++++|.+...+||.+=.+-.+.+.+.+++..||+-...--.
T Consensus 31 ~~dp~~~a~~~~~~g-~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 31 YGSPLDAALAWQRDG-AEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred CCCHHHHHHHHHHCC-CCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 446666666665532 234888898643 23346888888766678988878889999999999999986654432
Q ss_pred CHHHHHHHHHH
Q 006649 138 REEELKNIWQH 148 (637)
Q Consensus 138 s~eEL~~~Lq~ 148 (637)
+++.+.++++.
T Consensus 110 ~p~l~~~i~~~ 120 (241)
T PRK14024 110 NPEWCARVIAE 120 (241)
T ss_pred CHHHHHHHHHH
Confidence 34445544443
No 453
>PLN00191 enolase
Probab=22.46 E-value=5.7e+02 Score=29.34 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec-cCCHHHHHHHHHcCCCe-EEeCCCCHHHH
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACD-YLIKPIREEEL 142 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa-~~d~e~a~kAl~~GA~D-YLlKPis~eEL 142 (637)
+.++++++++...+.++++.+.=-++..| ++-.++|++...+||+.==. ..+...+.++++.++++ +++|+-...-|
T Consensus 296 s~~e~i~~~~~L~~~y~I~~IEDPl~~~D-~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGI 374 (457)
T PLN00191 296 SGDELIDLYKEFVSDYPIVSIEDPFDQDD-WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTV 374 (457)
T ss_pred CHHHHHHHHHHHhhcCCcEEEECCCCccc-HHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCH
Confidence 77888888887555578877765555433 55566676555666543111 24577788999988876 57888765545
Q ss_pred HHHHH
Q 006649 143 KNIWQ 147 (637)
Q Consensus 143 ~~~Lq 147 (637)
..+++
T Consensus 375 Tea~~ 379 (457)
T PLN00191 375 TESIE 379 (457)
T ss_pred HHHHH
Confidence 44444
No 454
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=22.44 E-value=91 Score=22.34 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLY 279 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~ 279 (637)
.|...+...+++..++|..+|.+. +++.++
T Consensus 3 ~l~~~~~~~~~s~~~~a~~~~~~~-~~v~~~ 32 (58)
T cd00093 3 RLKELRKEKGLTQEELAEKLGVSR-STISRI 32 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCH-HHHHHH
Confidence 445556667999999999998765 444444
No 455
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=22.44 E-value=4e+02 Score=26.03 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=56.9
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh---ccCCCcEEEEeccCCH
Q 006649 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (637)
Q Consensus 49 Lk~lL~~~gy~V~~--asng~EALelLre~~~~pDLVIlDI~MPd-----mDGlELLe~Ir---~~~~IPVIILSa~~d~ 118 (637)
....|...|+.+.. +..+..-+..+.... ||.|-+|..+-. .....+++.+. ...++. ++.++-++.
T Consensus 138 ~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~ 214 (241)
T smart00052 138 TLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVETP 214 (241)
T ss_pred HHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCCH
Confidence 34445666877653 455666677777665 999999965431 11334555542 334555 446777888
Q ss_pred HHHHHHHHcCCC----eEEeCCCCHH
Q 006649 119 SAVMRGIRHGAC----DYLIKPIREE 140 (637)
Q Consensus 119 e~a~kAl~~GA~----DYLlKPis~e 140 (637)
+....+.+.|++ .|+.||...+
T Consensus 215 ~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 215 EQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHHcCCCEEeeceeccCCCCC
Confidence 888889999986 3677886543
No 456
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=22.39 E-value=1.1e+02 Score=23.36 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=18.7
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
.|++|+.. |+++.+||..+|.+-.. +++++
T Consensus 13 ~i~~l~~~-G~si~~IA~~~gvsr~T-vyR~l 42 (45)
T PF02796_consen 13 EIKELYAE-GMSIAEIAKQFGVSRST-VYRYL 42 (45)
T ss_dssp HHHHHHHT-T--HHHHHHHTTS-HHH-HHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHCcCHHH-HHHHH
Confidence 45676655 59999999999987654 44444
No 457
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=22.37 E-value=5.6e+02 Score=28.38 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCC----CHHHHHHHHhcc-CCCcEEEEeccCCH
Q 006649 44 TCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM----DGFKLLEHIGLE-MDLPVIMMSADGRV 118 (637)
Q Consensus 44 ~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdm----DGlELLe~Ir~~-~~IPVIILSa~~d~ 118 (637)
.-.+.|...|...||..+.. ...+|||++.....-. ..++.++++++. ++.+||+--.+..
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~- 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQ- 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccc-
Confidence 34566777787778775431 1238999999755443 367778877643 4555554433332
Q ss_pred HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 119 SAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 119 e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
....++.++...|++.-+-..+.+...++..
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 2333445666788999998888888777643
No 458
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.30 E-value=3.2e+02 Score=24.41 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhccCCCcEEEEeccCCHHH
Q 006649 43 ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEMDLPVIMMSADGRVSA 120 (637)
Q Consensus 43 ~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdm--DGlELLe~Ir~~~~IPVIILSa~~d~e~ 120 (637)
....+.++..+...+..+....+.......+... ..-|++|+ +..++. +-.++++..++ .+++||.+|...+...
T Consensus 12 ~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~-~g~~vi~iT~~~~s~l 88 (128)
T cd05014 12 GHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKR-RGAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH-CCCeEEEEeCCCCCch
Confidence 3455667777777777776665543222222211 12466665 344443 34555666543 5799999999877654
Q ss_pred HHHHHHcCCCeEEeCCC
Q 006649 121 VMRGIRHGACDYLIKPI 137 (637)
Q Consensus 121 a~kAl~~GA~DYLlKPi 137 (637)
+. .++..|.-|.
T Consensus 89 a~-----~ad~~l~~~~ 100 (128)
T cd05014 89 AK-----LSDVVLDLPV 100 (128)
T ss_pred hh-----hCCEEEECCC
Confidence 43 3555555553
No 459
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=22.26 E-value=4.8e+02 Score=28.36 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006649 34 LRVLVVDDDITCL----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (637)
Q Consensus 34 irVLIVDDD~~~r----e~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~ 100 (637)
-|+|||-|..... +.+...|+..++.+..+. +..++++.+++.. +|.||- +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG--CDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 3789887765433 467777776665554432 2345666666654 898875 456666666666
Q ss_pred H
Q 006649 101 I 101 (637)
Q Consensus 101 I 101 (637)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 5
No 460
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.23 E-value=6.9e+02 Score=29.62 Aligned_cols=54 Identities=24% Similarity=0.227 Sum_probs=34.8
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 33 girVLIVDDD~~~---re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
+.+|.+++-|..- .+.++.+-...++.+..+.+..+..+.++... .+|+||+|.
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDT 436 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDT 436 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecC
Confidence 4678888866522 23344443444566667777777767666543 489999997
No 461
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=22.12 E-value=1e+03 Score=26.27 Aligned_cols=107 Identities=12% Similarity=0.165 Sum_probs=61.6
Q ss_pred ccEEEEEeCC-----HHHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006649 33 GLRVLVVDDD-----ITCLRILEQMLRRCLY--NVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (637)
Q Consensus 33 girVLIVDDD-----~~~re~Lk~lL~~~gy--~V~~asn--g~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~ 103 (637)
.++++|+.+. ....+.|+++.+..+. .|..... .++..+.++. -|+++.=. ..+.=|+-+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s-~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTM-WNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECC-ccCCcccHHHHHHH-
Confidence 4778888653 2345566666665443 3444433 4555555543 47766522 22333677777664
Q ss_pred cCCCcEEEEeccCCHHHHHHHHH---cCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 104 EMDLPVIMMSADGRVSAVMRGIR---HGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 104 ~~~IPVIILSa~~d~e~a~kAl~---~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
..+|+|....-...+ +.+. .|..+|+.. +++++.+++.+++.
T Consensus 347 -~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 -AGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -cCCcEEEEcCCCCch---heeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 356666533222222 2234 678889863 89999999988875
No 462
>PF13941 MutL: MutL protein
Probab=22.11 E-value=1.2e+03 Score=26.77 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=72.3
Q ss_pred CccEEEEEeCCHHHHH-HHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC---HHHHHHHHh-c
Q 006649 32 AGLRVLVVDDDITCLR-ILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMD---GFKLLEHIG-L 103 (637)
Q Consensus 32 ~girVLIVDDD~~~re-~Lk~lL~~~gy~V~---~asng~EALelLre~~~~pDLVIlDI~MPdmD---GlELLe~Ir-~ 103 (637)
.|+|++++-=.+..-. .-++.-...|-.|. ...-.++-++.+++.+ ||+||+==-..+.| .++..+.|. .
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~--PDiILLaGGtDgG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIR--PDIILLAGGTDGGNKEVILHNAEMLAEA 152 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccC--CCEEEEeCCccCCchHHHHHHHHHHHhC
Confidence 5688888875554332 33333333454443 3333456777777766 99999943222222 244555554 3
Q ss_pred cCCCcEEEEeccCCHHHHHHHHH-cCCCeEEeCCC-------CHHHHHHHHHHHHHHhh
Q 006649 104 EMDLPVIMMSADGRVSAVMRGIR-HGACDYLIKPI-------REEELKNIWQHVVRKRW 154 (637)
Q Consensus 104 ~~~IPVIILSa~~d~e~a~kAl~-~GA~DYLlKPi-------s~eEL~~~Lq~Vlrk~~ 154 (637)
...+|||+--...-.+.+.+.|. .|..-|++..+ ..+-.+.+|+.+..++.
T Consensus 153 ~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~I 211 (457)
T PF13941_consen 153 NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRHI 211 (457)
T ss_pred CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHH
Confidence 45788887766666677888888 66666776644 34455677777665543
No 463
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=22.06 E-value=3.8e+02 Score=31.69 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=51.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH--HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA--VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~--EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
.++++.++|.|+...+.+++ .++.+..- |+. +.++... -+..|++++-+.-++ .-..++..+|+ .++++
T Consensus 422 ~g~~vvvID~d~~~v~~~~~----~g~~v~~G-Dat~~~~L~~ag--i~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 422 SGVKMTVLDHDPDHIETLRK----FGMKVFYG-DATRMDLLESAG--AAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQ 493 (621)
T ss_pred CCCCEEEEECCHHHHHHHHh----cCCeEEEE-eCCCHHHHHhcC--CCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCe
Confidence 45778888888876555543 46665432 222 3333322 233787777663332 23445555554 46777
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeE
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DY 132 (637)
||+-+ .|.+...+..+.||+..
T Consensus 494 iiaRa--~d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 494 IIARA--RDVDHYIRLRQAGVEKP 515 (621)
T ss_pred EEEEE--CCHHHHHHHHHCCCCEE
Confidence 76644 44566777778888754
No 464
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.04 E-value=2.3e+02 Score=28.48 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc
Q 006649 71 DILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (637)
Q Consensus 71 elLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~ 115 (637)
|.+...+ |||||........ +..+.+++...+|++.+...
T Consensus 68 E~i~~l~--PDLIi~~~~~~~~---~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 68 EKIAALK--PDVVIDVGSDDPT---SIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHHhcC--CCEEEEecCCccc---hhHHHHHHhhCCCEEEEecC
Confidence 3334444 9999986543221 23444443356788877643
No 465
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=21.96 E-value=80 Score=29.36 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
+|.++|..-|+|.+|+|..+|. ..++++++.+..
T Consensus 9 ~l~~ll~~~Glsq~eLA~~~Gi-s~~~is~iE~g~ 42 (120)
T PRK13890 9 NVLRLLDERHMTKKELSERSGV-SISFLSDLTTGK 42 (120)
T ss_pred HHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHcCC
Confidence 4557777889999999999995 467677666543
No 466
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=21.93 E-value=1.3e+02 Score=31.19 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=39.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-------CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRC-------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~-------gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmD 93 (637)
|...+|-+||=|+.+.+..++.+... ...+ ...++...++...+. .+|+||+|+.-|...
T Consensus 98 ~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~~~~--~yDvIi~D~~dp~~~ 164 (246)
T PF01564_consen 98 PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKETQEE--KYDVIIVDLTDPDGP 164 (246)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTSSST---EEEEEEESSSTTSC
T ss_pred CCcceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhccCC--cccEEEEeCCCCCCC
Confidence 33458999999999999999887642 1233 566666655543321 599999999877643
No 467
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=21.92 E-value=1e+03 Score=25.68 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=40.4
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE------eC-CCCHHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IK-PIREEELKNIWQHVVRK 152 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL------lK-Pis~eEL~~~Lq~Vlrk 152 (637)
++.+.+++...++|||...+-.+.+.+.+.+.+||+..- .+ |--..++.+-+...+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEE 290 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHH
Confidence 355566655568999999999999999999999998642 22 54445555555554443
No 468
>PLN02727 NAD kinase
Probab=21.81 E-value=3.3e+02 Score=34.09 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=58.8
Q ss_pred ccEEEEEeCC-HHHHHHHH---HHHHhC-CCeEEEECCHHHHHHHH--------------HHcCCCceEEEEeCCCCCCC
Q 006649 33 GLRVLVVDDD-ITCLRILE---QMLRRC-LYNVTTCSQAAVALDIL--------------RERKGCFDVVLSDVHMPDMD 93 (637)
Q Consensus 33 girVLIVDDD-~~~re~Lk---~lL~~~-gy~V~~asng~EALelL--------------re~~~~pDLVIlDI~MPdmD 93 (637)
.-+|+||--. ....+.+. ..|... +++|..-....+.+..+ .+....+|+||+ -+.|
T Consensus 678 ~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv----LGGD 753 (986)
T PLN02727 678 PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC----LGGD 753 (986)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEE----ECCc
Confidence 3478888433 23444433 334443 67776554444433111 011113677776 3567
Q ss_pred HHHHHHHHh--ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 94 GFKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 94 GlELLe~Ir--~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|- +|+..+ ....+||+-+ ..|-.+||. .+.++++...|.+++.+.+
T Consensus 754 GT-lLrAar~~~~~~iPILGI-------------NlGrLGFLT-di~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 754 GV-ILHASNLFRGAVPPVVSF-------------NLGSLGFLT-SHYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred HH-HHHHHHHhcCCCCCEEEE-------------eCCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 73 444443 2356787744 457778888 5899999999999887653
No 469
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=21.77 E-value=2.1e+02 Score=34.36 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=48.7
Q ss_pred CceEEEEe-CCCCCCCHHHH-HHHHhccC-CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 79 ~pDLVIlD-I~MPdmDGlEL-Le~Ir~~~-~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.+-|+|+| ++|=..+.++. ++.|.+-+ ++.+|+.| .+...+...+..-+.-|-.||++.+++...++++++.
T Consensus 119 ~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~T--t~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEec--CCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH
Confidence 47788887 56555455654 44444322 34445544 3444566677777888999999999999999888754
No 470
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=21.65 E-value=7.1e+02 Score=26.89 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=51.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHH----HHHHHHcCCCceEEEEeCCCCCCC--HHHHHHHHhccCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVA----LDILRERKGCFDVVLSDVHMPDMD--GFKLLEHIGLEMD 106 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EA----LelLre~~~~pDLVIlDI~MPdmD--GlELLe~Ir~~~~ 106 (637)
...+++|||....+..|..+=-.....-....+..+. +..+.... -=.++.|.-||..+ |++|.+..+. .+
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~--~valVSDAG~P~ISDPG~~LV~~a~~-~g 106 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGK--SVALVSDAGTPLISDPGYELVRAARE-AG 106 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCC--eEEEEecCCCCcccCccHHHHHHHHH-cC
Confidence 4569999999988766655421111111112233333 33444332 34577899999864 9999998864 56
Q ss_pred CcEEEEeccCCH
Q 006649 107 LPVIMMSADGRV 118 (637)
Q Consensus 107 IPVIILSa~~d~ 118 (637)
++|+.+.+-+..
T Consensus 107 i~V~~lPG~sA~ 118 (275)
T COG0313 107 IRVVPLPGPSAL 118 (275)
T ss_pred CcEEecCCccHH
Confidence 888888776554
No 471
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=21.58 E-value=1.7e+02 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCCHHHHHhhhccc--hhhHHHHHHHHHhCCCC
Q 006649 249 RILELMNVPGLTRENVASHLQEI--NLQKFRLYLKRLNGVSQ 288 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~--d~qYFrk~FKk~~G~T~ 288 (637)
.|+.+| ..|++..|||+.+|.+ ...++++-..+..|+..
T Consensus 10 ~vl~~l-~~G~~~~eIA~~l~is~~tV~~~~~~i~~Kl~~~~ 50 (58)
T PF00196_consen 10 EVLRLL-AQGMSNKEIAEELGISEKTVKSHRRRIMKKLGVKN 50 (58)
T ss_dssp HHHHHH-HTTS-HHHHHHHHTSHHHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHH-HhcCCcchhHHhcCcchhhHHHHHHHHHHHhCCCC
Confidence 455543 4799999999999874 55666666666666654
No 472
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=21.57 E-value=1.1e+03 Score=25.86 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=50.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHHc------------CCCceEEEEeCCCCCCCH--HHHH
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRER------------KGCFDVVLSDVHMPDMDG--FKLL 98 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy-~V-~~asng~EALelLre~------------~~~pDLVIlDI~MPdmDG--lELL 98 (637)
+|..||-++...+.+++-+...+. ++ ..+.+..+.++.+... ...||+||+|= |. .| -+++
T Consensus 230 ~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--PR-~G~~~~~l 306 (362)
T PRK05031 230 RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--PR-AGLDDETL 306 (362)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--CC-CCCcHHHH
Confidence 799999999988888887766554 33 3667777777654321 11389999984 43 44 3566
Q ss_pred HHHhccCCCcEEEEeccC
Q 006649 99 EHIGLEMDLPVIMMSADG 116 (637)
Q Consensus 99 e~Ir~~~~IPVIILSa~~ 116 (637)
+.|.. + -.||.+|...
T Consensus 307 ~~l~~-~-~~ivyvSC~p 322 (362)
T PRK05031 307 KLVQA-Y-ERILYISCNP 322 (362)
T ss_pred HHHHc-c-CCEEEEEeCH
Confidence 77754 2 3467777654
No 473
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.57 E-value=4e+02 Score=28.47 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=50.2
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCC--C---CC--CCHHHHHHHHhccCCCcEEEEeccC-CHHHHHHHHHcCCCeEE
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVH--M---PD--MDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~--M---Pd--mDGlELLe~Ir~~~~IPVIILSa~~-d~e~a~kAl~~GA~DYL 133 (637)
.+++.++|.+..++.. +|.+-+-+- - ++ .=|++.+++|++..++|+++.-++. ..+.+.++++.|++..=
T Consensus 151 s~t~~eea~~f~~~tg--~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEETD--VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhhC--CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 3678888888876543 787777331 1 11 2378999999877789998886443 66778899999998653
No 474
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=21.56 E-value=96 Score=23.58 Aligned_cols=32 Identities=19% Similarity=0.056 Sum_probs=22.5
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
+|.+++...|++.+++|.++|.+ ..+++++.+
T Consensus 6 ~l~~~r~~~gltq~~lA~~~gvs-~~~vs~~e~ 37 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLAGVG-LRFIRDVEN 37 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHHC
Confidence 34455666899999999999865 455555543
No 475
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.52 E-value=3e+02 Score=29.79 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 34 irVLIVDDD~~~---re~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
-|+|||-|.... .+.+...|+..+..+..+. +..++.+..++.. +|+||. +.+..-+++.+.+
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~iia---vGGGs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQE--ADMIFA---VGGGKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcC--CCEEEE---eCCcHHHHHHHHH
Confidence 589999886543 3455666666555443221 2345555555544 899876 5677778888887
Q ss_pred hccCCCcEEEEe
Q 006649 102 GLEMDLPVIMMS 113 (637)
Q Consensus 102 r~~~~IPVIILS 113 (637)
.....+|+|.+-
T Consensus 98 a~~~~~p~i~VP 109 (345)
T cd08171 98 ADKLGKPVFTFP 109 (345)
T ss_pred HHHcCCCEEEec
Confidence 554567877663
No 476
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=21.43 E-value=9.3e+02 Score=25.01 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEe
Q 006649 46 LRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMS 113 (637)
Q Consensus 46 re~Lk~lL~~~gy~V~~-------asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVIILS 113 (637)
.+.++..++..+.+|.. ..+....+..++... +|+|++.. .+.+...+++.++.. ...+++..+
T Consensus 158 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~i~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~ 229 (345)
T cd06338 158 AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAG--PDAVVVAG--HFPDAVLLVRQMKELGYNPKALYMT 229 (345)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcC--CCEEEECC--cchhHHHHHHHHHHcCCCCCEEEEe
Confidence 34455555555655531 123344555555443 77777644 233455666666532 344555443
No 477
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=21.33 E-value=1.2e+02 Score=23.27 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
+|+.+|....+++.|||+++|.+.. -.++.+++.
T Consensus 6 ~Il~~L~~~~~~~~el~~~l~~s~~-~vs~hL~~L 39 (47)
T PF01022_consen 6 RILKLLSEGPLTVSELAEELGLSQS-TVSHHLKKL 39 (47)
T ss_dssp HHHHHHTTSSEEHHHHHHHHTS-HH-HHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHhccccch-HHHHHHHHH
Confidence 4777788888999999999987543 244455544
No 478
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.33 E-value=5.5e+02 Score=22.38 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=44.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc
Q 006649 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~ 115 (637)
|+||.-...-+..++.+.+ .++.|..+..-.+..+.+++.. ++++.-|.. -.+.++++... +...|+++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~-----~~~~l~~a~i~-~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEG--VEVIYGDAT-----DPEVLERAGIE-KADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTT--SEEEES-TT-----SHHHHHHTTGG-CESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcc--cccccccch-----hhhHHhhcCcc-ccCEEEEccC
Confidence 5788888877777777766 5667777777666677777654 777776653 34566665432 3334444444
Q ss_pred CCH
Q 006649 116 GRV 118 (637)
Q Consensus 116 ~d~ 118 (637)
++.
T Consensus 72 ~d~ 74 (116)
T PF02254_consen 72 DDE 74 (116)
T ss_dssp SHH
T ss_pred CHH
Confidence 443
No 479
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=21.27 E-value=9.5e+02 Score=26.73 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=40.1
Q ss_pred HHHHHHHhccC---CCcEEEEeccCCHHHHHHHHHcCCCe------EEeC-CCCHHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEM---DLPVIMMSADGRVSAVMRGIRHGACD------YLIK-PIREEELKNIWQHVVRK 152 (637)
Q Consensus 95 lELLe~Ir~~~---~IPVIILSa~~d~e~a~kAl~~GA~D------YLlK-Pis~eEL~~~Lq~Vlrk 152 (637)
++.+.++++.. ++|||-..+-.+.+.+.+.+..||+. .+.+ |--..+|..-++..+++
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~ 306 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDE 306 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHH
Confidence 45566665432 79999999999999999999999975 3443 44455565555555444
No 480
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.26 E-value=5.3e+02 Score=29.14 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=67.0
Q ss_pred HHHHHcCC-------CCCCCcccccccCCCCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHH
Q 006649 6 RIVQSSGG-------SGYGSSRAADVAVPDQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCSQ--AAVALDILRE 75 (637)
Q Consensus 6 ~~v~~mgG-------s~~~~~~~~~~~~~~~fp~girVLIVDDD-~~~re~Lk~lL~~~gy~V~~asn--g~EALelLre 75 (637)
+++++=|| ||+++..+.-+.+ +.+|=+|++.+|- --.+..+..++.+.+++|..+.. ..+.++.+..
T Consensus 71 ~~a~LEg~~~~~afsSGmaAI~~~~l~l---l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~ 147 (396)
T COG0626 71 ALAELEGGEDAFAFSSGMAAISTALLAL---LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE 147 (396)
T ss_pred HHHHhhCCCcEEEecCcHHHHHHHHHHh---cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc
Confidence 44455555 4444444432222 3446688888884 55677788888888888886664 4455556553
Q ss_pred cCCCceEEEEeC-CCCCCCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 76 RKGCFDVVLSDV-HMPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 76 ~~~~pDLVIlDI-~MPdmDG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
. ..++|+++. .-|-|.- +..+.++..... .++++=..--.-+..+.+++||+=.
T Consensus 148 ~--~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g-~~vvVDNTfatP~~q~PL~~GaDIV 204 (396)
T COG0626 148 P--NTKLVFLETPSNPLLEVPDIPAIARLAKAYG-ALVVVDNTFATPVLQRPLELGADIV 204 (396)
T ss_pred c--CceEEEEeCCCCcccccccHHHHHHHHHhcC-CEEEEECCcccccccChhhcCCCEE
Confidence 2 389999986 1233322 223333322233 3333322222234567888887644
No 481
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.24 E-value=2.4e+02 Score=28.99 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=39.0
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCce--EEEEeCCCCCCCHHHHHHHHhccCC
Q 006649 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFD--VVLSDVHMPDMDGFKLLEHIGLEMD 106 (637)
Q Consensus 29 ~fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pD--LVIlDI~MPdmDGlELLe~Ir~~~~ 106 (637)
.++.|-||+||||- +++=.+..+|++.+++....+. ++++|-. +-.++......
T Consensus 108 ~~~~G~kVvvVEDV-----------------iTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-------~~~~~~~~~~g 163 (201)
T COG0461 108 GEVKGEKVVVVEDV-----------------ITTGGSILEAVEALREAGAEVVGVAVIVDRQ-------SGAKEVLKEYG 163 (201)
T ss_pred cCCCCCEEEEEEec-----------------ccCCHhHHHHHHHHHHcCCeEEEEEEEEecc-------hhHHHHHHhcC
Confidence 34578899999993 3344556677778876553332 5566765 22233333456
Q ss_pred CcEEEEeccCCH
Q 006649 107 LPVIMMSADGRV 118 (637)
Q Consensus 107 IPVIILSa~~d~ 118 (637)
+|++-+...++.
T Consensus 164 ~~~~sl~tl~dl 175 (201)
T COG0461 164 VKLVSLVTLSDL 175 (201)
T ss_pred CceEEEeeHHHH
Confidence 777666555444
No 482
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.23 E-value=3.1e+02 Score=29.64 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=32.6
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
.+++++|++..++||+......+.+.+.++++.|..|++
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 467778877778999988888889999999999988865
No 483
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=21.19 E-value=8.8e+02 Score=24.64 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=42.2
Q ss_pred ceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MP-----dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
-|++++-..-+ +.-|..+++.+. ..+|||. +.... ..+.++.+..+++.++-+.++|.+.+..++.
T Consensus 256 adi~l~~s~~~~~~~~e~~~~~~~Ea~a--~G~Pvi~-~~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 256 ADLFVLPSVTAADGDREGLPVVLMEAMA--MGLPVIS-TDVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred CCEEEecceecCCCCccCccHHHHHHHH--cCCCEEe-cCCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46666533221 222556666653 4678775 32222 3345677888999999999999999988764
No 484
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=21.19 E-value=5.5e+02 Score=25.85 Aligned_cols=65 Identities=12% Similarity=0.264 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCC----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHH-HHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFD-VVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR-GIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pD-LVIlDI~M----PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~k-Al~~GA~DYLl 134 (637)
.+..+.+.+.. .| ++++|+.- ++. -+++++++++..++|||..-+-.+.+.+.+ ..+.||+..++
T Consensus 156 ~~~~~~~~~~G--~d~i~i~~i~~~g~~~g~-~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQLG--AGEILLNSIDRDGTMKGY-DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCccCCcCCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 34445554433 56 66666422 222 278888887767899998888888888888 66789987654
No 485
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=21.19 E-value=4.7e+02 Score=28.48 Aligned_cols=63 Identities=22% Similarity=0.185 Sum_probs=40.8
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 34 LRVLVVDDDIT-CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 34 irVLIVDDD~~-~re~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
-|+|||-|... ....+...|+..+..+..+. +.+++.+.+++.. +|.||. ..+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG--PDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCCcHHHHHHHHH
Confidence 37888877654 45667788877665554432 3446777777655 898875 4565566666655
No 486
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=21.00 E-value=5e+02 Score=28.59 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006649 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (637)
Q Consensus 34 irVLIVDDD~~~r-----e~Lk~lL~~~gy~V~~as---------ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe 99 (637)
-|+|||-|..... +.+...|+..+.++..+. +..++.+.+++.. +|+||. ..+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--AQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 3799998876543 567778877776665543 2346666777655 898875 34555555555
Q ss_pred HH
Q 006649 100 HI 101 (637)
Q Consensus 100 ~I 101 (637)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 44
No 487
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.91 E-value=3.3e+02 Score=27.91 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccCCCcEEE---E--eccCCHHHHHHHHHcCCCeEEeCC
Q 006649 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMDLPVIM---M--SADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 64 sng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir~~~~IPVII---L--Sa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
.+.+++++.+++.. .+++.+|+.++- .-|.++++.|++. +.+|++ + .......++..+.+.||+-+..-+
T Consensus 12 ~~~~~~l~~~~~~~--~~~~~ikvg~~~f~~~G~~~i~~l~~~-~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~ 88 (230)
T PRK00230 12 PSKEEALAFLDQLD--PAVLFVKVGMELFTAGGPQFVRELKQR-GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHA 88 (230)
T ss_pred CCHHHHHHHHHhcC--CcccEEEEcHHHHHhcCHHHHHHHHhc-CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcc
Confidence 34567777776654 566677776653 3467777777643 223221 1 122333456667888888877777
Q ss_pred CCHHHHH
Q 006649 137 IREEELK 143 (637)
Q Consensus 137 is~eEL~ 143 (637)
..-.+..
T Consensus 89 ~ag~~~i 95 (230)
T PRK00230 89 SGGPRMM 95 (230)
T ss_pred cCCHHHH
Confidence 6544433
No 488
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.89 E-value=4.6e+02 Score=25.56 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=44.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---C-Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 34 LRVLVVDDDITCLRILEQMLRRC---L-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~---g-y~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
.-+.||.||+..++.|+.-.... + .. |+-+ ...++++.+++.. +.|-|. -.+|-++.+++.. .+-|
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV-~t~~~L~~Lr~la--pgl~l~-----P~sgddLA~rL~l-~HYP 133 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNV-ATEAALQRLRQLA--PGLPLL-----PVSGDDLARRLGL-SHYP 133 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEec-CCHHHHHHHHHHc--CCCeec-----CCCHHHHHHHhCC-Cccc
Confidence 46899999999999888765532 2 11 2222 2356777777654 554443 4489999999853 4557
Q ss_pred EEE
Q 006649 109 VIM 111 (637)
Q Consensus 109 VII 111 (637)
|+|
T Consensus 134 vLI 136 (142)
T PF11072_consen 134 VLI 136 (142)
T ss_pred EEe
Confidence 665
No 489
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.71 E-value=4.1e+02 Score=30.04 Aligned_cols=54 Identities=17% Similarity=0.106 Sum_probs=40.7
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 79 ~pDLVIlDI~MPd-mDGlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
..|+|.+|.--+. ..-++++++|+.. ++++| ++..-...+.+..++++||+...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCCCEEE
Confidence 3899999997774 4566888888754 56664 44555677889999999998754
No 490
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=20.69 E-value=2.9e+02 Score=27.84 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 006649 78 GCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 78 ~~pDLVIlDI~M-----PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~k 123 (637)
..+|+||+|=-+ .=.+--++++.|+..+.--=|+||++.-.+...+
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLA 164 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 349999999433 2345567777776555544577888876655544
No 491
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=20.69 E-value=7.3e+02 Score=27.89 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=34.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eE-------------------EEECCHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY-NV-------------------TTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy-~V-------------------~~asng~EALelLre~~~~pDLVIlDI~MPdm 92 (637)
.||||||..--.-.....++.+.-.+ .+ ....+.++.++.+++.. +|+|+....-|-.
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~--iD~Vv~g~E~~l~ 81 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNP--FDLIVVGPEDPLV 81 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcC--CCEEEECCchHHH
Confidence 48999998776544444444332111 11 11245566677777665 9999986544443
Q ss_pred CHH
Q 006649 93 DGF 95 (637)
Q Consensus 93 DGl 95 (637)
.|+
T Consensus 82 ~gl 84 (426)
T PRK13789 82 AGF 84 (426)
T ss_pred HHH
Confidence 333
No 492
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=20.68 E-value=9.9e+02 Score=25.05 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCH------
Q 006649 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE------ 139 (637)
Q Consensus 66 g~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~------ 139 (637)
.++..+.+.. .|++++=.. .+.-|+-+++.+. ..+|||. |... ...+.+..|..+++.++-+.
T Consensus 271 ~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a--~G~PvI~-s~~~---~~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 271 KEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA--CGTPVVA-SATG---GIPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred HHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--cCCCEEE-eCCC---CHHHHhhCCCceEEcCCCCCcccchH
Confidence 3444444432 577665322 2334666666653 4678775 3322 24455677888999999887
Q ss_pred HHHHHHHHHHHH
Q 006649 140 EELKNIWQHVVR 151 (637)
Q Consensus 140 eEL~~~Lq~Vlr 151 (637)
++|.+++.+++.
T Consensus 340 ~~l~~~i~~l~~ 351 (388)
T TIGR02149 340 AELAKAINILLA 351 (388)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 493
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.67 E-value=1e+03 Score=27.21 Aligned_cols=56 Identities=25% Similarity=0.203 Sum_probs=31.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CHHH-HHHHHHHcCCCceEEEEeCC
Q 006649 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAAV-ALDILRERKGCFDVVLSDVH 88 (637)
Q Consensus 32 ~girVLIVDDD~~---~re~Lk~lL~~~gy~V~~as---ng~E-ALelLre~~~~pDLVIlDI~ 88 (637)
.+.+|++|+-|.. ..+.++.+....+..+.... +..+ +.+.++... ..|+||+|.-
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 4679999988753 33445555555555554432 3222 223333322 2599999984
No 494
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.65 E-value=3.9e+02 Score=28.68 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=57.0
Q ss_pred ccEEEEEeC-CHHHHHHHHH---HHHhCCCeEEEECCHHHHHHH----HHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-
Q 006649 33 GLRVLVVDD-DITCLRILEQ---MLRRCLYNVTTCSQAAVALDI----LRERKGCFDVVLSDVHMPDMDGFKLLEHIGL- 103 (637)
Q Consensus 33 girVLIVDD-D~~~re~Lk~---lL~~~gy~V~~asng~EALel----Lre~~~~pDLVIlDI~MPdmDGlELLe~Ir~- 103 (637)
..+|.|+-. .+...+.+++ .|...++.+.........+.. ..+....+|+||+ -+.||- +++..+.
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDGT-~L~aa~~~ 84 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS----LGGDGT-LISLCRKA 84 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE----ECCCHH-HHHHHHHh
Confidence 345777732 2344444444 444456666554332222110 0111123788876 356773 3444442
Q ss_pred -cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 104 -EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 104 -~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
..++||+-+. .|-.+||. .++++++...++++++..+
T Consensus 85 ~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 85 AEYDKFVLGIH-------------AGHLGFLT-DITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred cCCCCcEEEEe-------------CCCcccCC-cCCHHHHHHHHHHHHcCCC
Confidence 3478877543 46667876 6788999999999876653
No 495
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.60 E-value=3.1e+02 Score=29.33 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=38.4
Q ss_pred HHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 96 KLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 96 ELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+.++++|.. +....| ..--++.+.+.+|+++||+-.++--+++++|+++++.+
T Consensus 170 ~~v~~~k~~~p~~~~I-~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 170 EFIQHARKNIPFTAKI-EIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHhCCCCceE-EEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 344555433 322223 33556889999999999999889999999999999753
No 496
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.55 E-value=2.5e+02 Score=30.76 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 64 SQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 64 sng~EALelLre-~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
.|..||+..+.. ..+.-|+|++- |.+-=+++++.++...++||...-...++..++.|-+.|..|+
T Consensus 222 ~n~~eAlre~~~Di~EGAD~lMVK---Pal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~ 288 (320)
T cd04823 222 ANSREALREVALDIAEGADMVMVK---PGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDE 288 (320)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcH
Confidence 456677765542 23457988875 6666788999998878999999888889988889999987654
No 497
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.55 E-value=1e+03 Score=25.17 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred ChHHHHHHHHcCCCCCCCcccccccCCCCCCCccEEEEEeCC-------HHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Q 006649 1 MAALQRIVQSSGGSGYGSSRAADVAVPDQFPAGLRVLVVDDD-------ITCLRILEQMLRRCLYNVTTCSQAAVALDIL 73 (637)
Q Consensus 1 la~~~~~v~~mgGs~~~~~~~~~~~~~~~fp~girVLIVDDD-------~~~re~Lk~lL~~~gy~V~~asng~EALelL 73 (637)
+....+-+-..||...-+....+. |||.|+| ....+.+++.+........++.+.+++.+.+
T Consensus 131 ~r~~~k~Av~~GGg~~HR~~L~d~-----------vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~ 199 (268)
T cd01572 131 LRLLEKYAVRCGGGDNHRFGLSDA-----------VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEAL 199 (268)
T ss_pred hHHHHHHHHHhCCCccccCCCcce-----------eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHH
Q ss_pred HHcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 74 RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 74 re~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~--~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
... +|.|.+|-.-| +.++++.... ++| |+.++--+.+.+.+..+.|++..
T Consensus 200 ~~g---aDyI~ld~~~~-----e~l~~~~~~~~~~ip-i~AiGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 200 EAG---ADIIMLDNMSP-----EELREAVALLKGRVL-LEASGGITLENIRAYAETGVDYI 251 (268)
T ss_pred HcC---CCEEEECCcCH-----HHHHHHHHHcCCCCc-EEEECCCCHHHHHHHHHcCCCEE
No 498
>PLN02476 O-methyltransferase
Probab=20.44 E-value=4.1e+02 Score=28.44 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=43.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEeCC
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~--V~-~asng~EALelLre~--~~~pDLVIlDI~ 88 (637)
.|..-+|.-+|-++...+..+..++..++. |. ...++.+.|..+... ...||+|++|..
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 344457999999999999999999988753 43 456777777655321 235999999985
No 499
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.42 E-value=4.1e+02 Score=27.64 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc-----C-CCeEEe
Q 006649 66 AAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYLI 134 (637)
Q Consensus 66 g~EALelLre~~~~pDLVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~-----G-A~DYLl 134 (637)
..+.++.+.... .-.+|++||.--++ .| ++++++++...++|||.--+-.+.+.+.++.+. | +.+-|+
T Consensus 146 ~~e~~~~~~~~g-~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 146 PVSLLKRLKEYG-LEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHHHHHHHhcC-CCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 455556555432 24899999976654 34 567888876678999998888888888888876 5 776554
No 500
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.35 E-value=3.2e+02 Score=29.39 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=32.8
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
.|.+. -.+.+.+.+|++.||+-..+-+++++++++++..+
T Consensus 198 ~I~VE-v~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 198 TIEVE-TETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred EEEEE-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 34444 45778889999999988889999999999998754
Done!