Query 006649
Match_columns 637
No_of_seqs 375 out of 2278
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.1E-24 3.8E-29 201.5 16.1 120 31-152 10-133 (134)
2 3f6p_A Transcriptional regulat 99.9 3.7E-21 1.3E-25 168.4 16.4 118 33-152 2-119 (120)
3 3gl9_A Response regulator; bet 99.9 4.4E-21 1.5E-25 168.7 16.8 116 34-151 3-121 (122)
4 3t6k_A Response regulator rece 99.9 1.4E-20 4.8E-25 168.6 17.8 119 33-153 4-125 (136)
5 2lpm_A Two-component response 99.9 2.9E-23 9.9E-28 189.8 -0.8 113 32-150 7-120 (123)
6 2r25_B Osmosensing histidine p 99.8 1.5E-20 5E-25 167.8 16.3 120 33-152 2-127 (133)
7 3mm4_A Histidine kinase homolo 99.8 1.5E-20 5.1E-25 181.9 16.3 120 32-153 60-197 (206)
8 3m6m_D Sensory/regulatory prot 99.8 8.2E-20 2.8E-24 165.2 16.5 120 31-152 12-136 (143)
9 3h1g_A Chemotaxis protein CHEY 99.8 1.1E-19 3.8E-24 160.6 17.0 118 33-151 5-126 (129)
10 1zgz_A Torcad operon transcrip 99.8 2.1E-19 7.3E-24 155.9 18.3 118 34-153 3-120 (122)
11 2pl1_A Transcriptional regulat 99.8 2.5E-19 8.7E-24 154.9 18.5 118 34-153 1-119 (121)
12 2a9o_A Response regulator; ess 99.8 1.9E-19 6.3E-24 155.1 17.0 117 34-152 2-118 (120)
13 3gt7_A Sensor protein; structu 99.8 1.8E-19 6.3E-24 164.5 17.6 122 32-155 6-130 (154)
14 3rqi_A Response regulator prot 99.8 2.9E-20 1E-24 175.6 12.4 119 33-153 7-126 (184)
15 3crn_A Response regulator rece 99.8 2.6E-19 8.9E-24 158.8 17.8 119 33-153 3-122 (132)
16 1a04_A Nitrate/nitrite respons 99.8 2.5E-19 8.5E-24 172.0 18.9 161 32-194 4-175 (215)
17 1dbw_A Transcriptional regulat 99.8 2.7E-19 9.4E-24 156.8 17.4 118 33-152 3-121 (126)
18 1xhf_A DYE resistance, aerobic 99.8 3.3E-19 1.1E-23 154.9 17.7 118 34-153 4-121 (123)
19 3r0j_A Possible two component 99.8 3.8E-19 1.3E-23 175.8 20.0 120 32-153 22-142 (250)
20 2qzj_A Two-component response 99.8 2.4E-19 8.4E-24 160.4 16.9 119 33-153 4-122 (136)
21 1srr_A SPO0F, sporulation resp 99.8 2.3E-19 8E-24 156.5 15.9 116 34-151 4-120 (124)
22 1zh2_A KDP operon transcriptio 99.8 2.9E-19 1E-23 154.1 16.3 118 34-153 2-119 (121)
23 1tmy_A CHEY protein, TMY; chem 99.8 3.1E-19 1.1E-23 154.5 16.3 116 33-150 2-119 (120)
24 3hv2_A Response regulator/HD d 99.8 3.9E-19 1.3E-23 161.5 17.4 122 32-155 13-136 (153)
25 3jte_A Response regulator rece 99.8 6.5E-19 2.2E-23 157.3 18.5 123 33-155 3-126 (143)
26 1jbe_A Chemotaxis protein CHEY 99.8 5.7E-19 1.9E-23 154.5 17.6 119 32-152 3-125 (128)
27 3q9s_A DNA-binding response re 99.8 1.3E-19 4.5E-24 180.4 15.3 154 33-188 37-197 (249)
28 1i3c_A Response regulator RCP1 99.8 5.3E-19 1.8E-23 160.3 17.7 122 32-153 7-138 (149)
29 1p6q_A CHEY2; chemotaxis, sign 99.8 2.6E-19 8.8E-24 156.9 14.6 119 32-152 5-127 (129)
30 3h5i_A Response regulator/sens 99.8 1.2E-19 4.1E-24 162.6 12.6 122 33-155 5-127 (140)
31 3hdg_A Uncharacterized protein 99.8 3.9E-19 1.3E-23 157.6 15.8 122 32-155 6-128 (137)
32 1yio_A Response regulatory pro 99.8 1E-19 3.6E-24 173.4 12.7 156 33-191 4-160 (208)
33 3lua_A Response regulator rece 99.8 1.1E-19 3.8E-24 162.1 12.0 121 32-154 3-129 (140)
34 1k68_A Phytochrome response re 99.8 8E-19 2.7E-23 154.3 17.2 122 33-154 2-133 (140)
35 3b2n_A Uncharacterized protein 99.8 5.5E-19 1.9E-23 156.9 16.2 119 33-153 3-124 (133)
36 3kht_A Response regulator; PSI 99.8 6.3E-19 2.1E-23 157.9 16.5 122 32-155 4-131 (144)
37 3grc_A Sensor protein, kinase; 99.8 2.9E-19 9.8E-24 159.1 14.1 122 32-155 5-130 (140)
38 1mb3_A Cell division response 99.8 4E-19 1.4E-23 154.3 14.5 116 34-151 2-120 (124)
39 3ilh_A Two component response 99.8 7.7E-19 2.6E-23 156.3 16.7 120 32-153 8-140 (146)
40 1dz3_A Stage 0 sporulation pro 99.8 5.2E-19 1.8E-23 155.8 15.4 119 33-153 2-124 (130)
41 3hdv_A Response regulator; PSI 99.8 1E-18 3.5E-23 154.7 17.3 122 31-153 5-128 (136)
42 3heb_A Response regulator rece 99.8 9.5E-19 3.3E-23 158.5 17.4 122 32-153 3-136 (152)
43 3eod_A Protein HNR; response r 99.8 3.7E-19 1.3E-23 156.4 14.2 120 32-153 6-127 (130)
44 3kto_A Response regulator rece 99.8 2E-19 6.8E-24 160.4 12.6 121 32-154 5-128 (136)
45 4e7p_A Response regulator; DNA 99.8 7.1E-19 2.4E-23 159.3 16.3 122 31-154 18-142 (150)
46 1kgs_A DRRD, DNA binding respo 99.8 6.6E-19 2.3E-23 169.5 16.6 155 33-189 2-167 (225)
47 3i42_A Response regulator rece 99.8 3.4E-19 1.2E-23 156.0 13.3 117 33-152 3-122 (127)
48 3f6c_A Positive transcription 99.8 3E-19 1E-23 157.5 13.0 120 33-154 1-122 (134)
49 1mvo_A PHOP response regulator 99.8 1.1E-18 3.6E-23 154.3 16.3 119 33-153 3-122 (136)
50 3cfy_A Putative LUXO repressor 99.8 8.1E-19 2.8E-23 157.3 15.7 118 34-153 5-123 (137)
51 3cnb_A DNA-binding response re 99.8 1.9E-18 6.5E-23 153.2 17.9 121 32-154 7-132 (143)
52 1k66_A Phytochrome response re 99.8 1.4E-18 4.9E-23 154.7 17.1 123 32-154 5-140 (149)
53 2zay_A Response regulator rece 99.8 8.7E-19 3E-23 157.2 15.6 122 31-154 6-130 (147)
54 3hzh_A Chemotaxis response reg 99.8 7.7E-19 2.6E-23 160.9 15.5 120 31-150 34-155 (157)
55 1s8n_A Putative antiterminator 99.8 6.6E-19 2.3E-23 168.1 15.6 122 30-153 10-132 (205)
56 3nhm_A Response regulator; pro 99.8 8.9E-19 3E-23 154.2 15.3 120 32-155 3-125 (133)
57 3n0r_A Response regulator; sig 99.8 1.1E-19 3.8E-24 186.5 10.4 118 33-154 160-279 (286)
58 3luf_A Two-component system re 99.8 1.2E-18 4.1E-23 175.2 17.2 124 32-156 123-249 (259)
59 3cg0_A Response regulator rece 99.8 2.4E-18 8.4E-23 152.3 16.9 121 32-154 8-130 (140)
60 2jba_A Phosphate regulon trans 99.8 2.3E-19 8E-24 156.4 10.0 118 33-152 2-122 (127)
61 4dad_A Putative pilus assembly 99.8 6.3E-19 2.2E-23 158.3 12.9 121 31-153 18-142 (146)
62 3eul_A Possible nitrate/nitrit 99.8 3.1E-18 1.1E-22 155.1 17.2 123 30-154 12-137 (152)
63 2oqr_A Sensory transduction pr 99.8 1.2E-18 4E-23 168.7 15.2 154 33-188 4-171 (230)
64 3n53_A Response regulator rece 99.8 6.3E-19 2.1E-23 157.2 12.1 120 33-155 3-125 (140)
65 3snk_A Response regulator CHEY 99.8 1.3E-19 4.5E-24 161.0 7.6 119 32-152 13-133 (135)
66 3c3m_A Response regulator rece 99.8 2.2E-18 7.4E-23 154.0 15.4 119 33-153 3-124 (138)
67 3lte_A Response regulator; str 99.8 3.5E-18 1.2E-22 150.2 16.1 119 32-153 5-126 (132)
68 2gwr_A DNA-binding response re 99.8 1.4E-18 4.6E-23 170.3 14.7 154 33-188 5-168 (238)
69 2ayx_A Sensor kinase protein R 99.8 3.5E-18 1.2E-22 170.9 17.9 121 31-153 127-248 (254)
70 3kcn_A Adenylate cyclase homol 99.8 3.5E-18 1.2E-22 154.9 16.0 121 32-154 3-125 (151)
71 3cg4_A Response regulator rece 99.8 1.3E-18 4.4E-23 154.9 12.6 122 32-155 6-130 (142)
72 1ys7_A Transcriptional regulat 99.8 2.9E-18 9.9E-23 165.9 15.9 155 33-189 7-175 (233)
73 2rjn_A Response regulator rece 99.8 6.3E-18 2.2E-22 153.4 17.1 121 32-154 6-128 (154)
74 2qr3_A Two-component system re 99.8 4.9E-18 1.7E-22 150.4 15.9 119 33-153 3-127 (140)
75 2qxy_A Response regulator; reg 99.8 3.7E-18 1.3E-22 152.2 14.8 120 32-154 3-123 (142)
76 3dzd_A Transcriptional regulat 99.8 1.5E-18 5E-23 184.5 14.3 119 34-154 1-120 (368)
77 3cu5_A Two component transcrip 99.8 1.4E-18 4.7E-23 156.5 11.8 120 33-154 2-125 (141)
78 1dcf_A ETR1 protein; beta-alph 99.8 3.5E-18 1.2E-22 151.6 14.0 118 32-152 6-129 (136)
79 3a10_A Response regulator; pho 99.8 2.7E-18 9.2E-23 147.7 12.8 113 34-150 2-115 (116)
80 3c3w_A Two component transcrip 99.8 5.3E-19 1.8E-23 172.4 9.2 161 33-195 1-171 (225)
81 3eq2_A Probable two-component 99.8 2.6E-18 8.8E-23 181.5 14.2 119 33-153 5-125 (394)
82 3klo_A Transcriptional regulat 99.8 6.6E-19 2.3E-23 171.1 8.5 161 32-194 6-180 (225)
83 2qvg_A Two component response 99.8 1.2E-17 4E-22 148.8 16.0 119 33-151 7-134 (143)
84 2jk1_A HUPR, hydrogenase trans 99.8 1.5E-17 5E-22 148.4 16.5 117 34-153 2-120 (139)
85 1qkk_A DCTD, C4-dicarboxylate 99.8 9.4E-18 3.2E-22 152.4 15.4 121 32-154 2-123 (155)
86 1p2f_A Response regulator; DRR 99.8 8E-18 2.7E-22 162.0 15.4 152 33-189 2-161 (220)
87 3cz5_A Two-component response 99.8 1E-17 3.5E-22 151.8 15.0 120 32-153 4-126 (153)
88 2gkg_A Response regulator homo 99.8 9.3E-18 3.2E-22 145.1 13.9 115 34-151 6-124 (127)
89 3kyj_B CHEY6 protein, putative 99.7 6E-18 2.1E-22 152.0 11.9 113 31-145 11-128 (145)
90 1ny5_A Transcriptional regulat 99.7 1.5E-17 5.2E-22 177.6 16.7 118 34-153 1-119 (387)
91 1w25_A Stalked-cell differenti 99.7 1.7E-17 5.8E-22 177.9 16.9 118 34-153 2-122 (459)
92 2qv0_A Protein MRKE; structura 99.7 5.9E-17 2E-21 144.6 17.0 120 32-155 8-130 (143)
93 2qsj_A DNA-binding response re 99.7 1.5E-17 5.1E-22 150.6 12.5 120 33-154 3-126 (154)
94 2pln_A HP1043, response regula 99.7 5.6E-17 1.9E-21 144.0 15.9 117 30-152 15-133 (137)
95 3t8y_A CHEB, chemotaxis respon 99.7 3.6E-17 1.2E-21 151.4 15.2 118 32-151 24-154 (164)
96 3c97_A Signal transduction his 99.7 1.5E-17 5E-22 148.6 11.9 116 33-153 10-131 (140)
97 2rdm_A Response regulator rece 99.7 6.5E-17 2.2E-21 141.8 15.6 118 33-153 5-124 (132)
98 2j48_A Two-component sensor ki 99.7 2.1E-17 7.1E-22 140.3 11.3 113 33-150 1-116 (119)
99 3bre_A Probable two-component 99.7 2.4E-17 8.1E-22 170.3 14.0 117 33-151 18-138 (358)
100 3eqz_A Response regulator; str 99.7 9E-18 3.1E-22 147.4 9.0 118 33-153 3-126 (135)
101 2hqr_A Putative transcriptiona 99.7 4.4E-17 1.5E-21 157.2 13.3 149 34-188 1-158 (223)
102 2b4a_A BH3024; flavodoxin-like 99.7 2.7E-17 9.3E-22 146.2 9.0 119 27-151 9-130 (138)
103 3sy8_A ROCR; TIM barrel phosph 99.7 5.8E-17 2E-21 172.6 12.9 120 33-154 3-130 (400)
104 1qo0_D AMIR; binding protein, 99.7 3.2E-17 1.1E-21 155.4 9.4 115 32-153 11-126 (196)
105 1dc7_A NTRC, nitrogen regulati 99.7 1.7E-18 5.9E-23 149.5 -1.7 118 34-153 4-122 (124)
106 1a2o_A CHEB methylesterase; ba 99.6 2.2E-15 7.4E-20 159.3 16.0 118 33-152 3-133 (349)
107 3luf_A Two-component system re 99.6 1.1E-15 3.7E-20 153.6 9.1 103 34-140 5-108 (259)
108 1irz_A ARR10-B; helix-turn-hel 99.6 2.9E-15 9.8E-20 122.5 6.4 62 217-283 2-63 (64)
109 2vyc_A Biodegradative arginine 99.5 7.4E-15 2.5E-19 169.5 9.0 119 34-153 1-134 (755)
110 3oou_A LIN2118 protein; protei 99.0 1.2E-10 4E-15 102.4 2.6 61 224-289 41-101 (108)
111 1w25_A Stalked-cell differenti 99.0 1.1E-08 3.6E-13 109.6 18.0 118 32-153 151-271 (459)
112 3cwo_X Beta/alpha-barrel prote 99.0 3.7E-10 1.3E-14 108.7 5.9 92 58-151 6-100 (237)
113 2k9s_A Arabinose operon regula 99.0 1.5E-10 5.1E-15 101.5 2.6 61 224-289 40-100 (107)
114 3oio_A Transcriptional regulat 99.0 1.4E-10 4.6E-15 102.7 2.3 61 224-289 43-103 (113)
115 3lsg_A Two-component response 98.9 2E-10 6.8E-15 99.9 2.6 61 224-289 39-99 (103)
116 3mn2_A Probable ARAC family tr 98.9 2.5E-10 8.5E-15 100.1 2.9 61 224-289 38-100 (108)
117 1bl0_A Protein (multiple antib 98.9 3E-10 1E-14 103.1 2.6 61 224-289 47-107 (129)
118 3mkl_A HTH-type transcriptiona 98.9 5.3E-10 1.8E-14 100.0 3.0 60 224-289 43-102 (120)
119 3gbg_A TCP pilus virulence reg 98.7 2.7E-09 9.1E-14 107.0 1.6 60 224-289 205-264 (276)
120 1d5y_A ROB transcription facto 98.6 1.5E-08 5.2E-13 102.2 2.4 62 223-289 38-99 (292)
121 4fe7_A Xylose operon regulator 98.5 2.2E-08 7.6E-13 106.1 2.2 62 223-289 340-401 (412)
122 2ayx_A Sensor kinase protein R 97.1 0.0007 2.4E-08 67.1 7.4 97 31-151 9-105 (254)
123 1u8b_A ADA polyprotein; protei 97.0 0.0004 1.4E-08 62.7 4.1 50 234-289 73-123 (133)
124 3n75_A LDC, lysine decarboxyla 96.5 0.0031 1.1E-07 72.8 6.8 104 45-152 18-123 (715)
125 3cwo_X Beta/alpha-barrel prote 95.8 0.043 1.5E-06 52.1 10.3 82 65-147 131-221 (237)
126 3q7r_A Transcriptional regulat 95.1 0.059 2E-06 47.9 7.7 102 34-152 13-118 (121)
127 2yxb_A Coenzyme B12-dependent 93.7 1.3 4.4E-05 41.5 14.1 119 32-153 17-146 (161)
128 3mn2_A Probable ARAC family tr 91.6 0.12 4.1E-06 44.5 3.5 32 257-289 17-48 (108)
129 2k9s_A Arabinose operon regula 91.5 0.11 3.7E-06 44.7 3.2 37 252-289 14-50 (107)
130 3oio_A Transcriptional regulat 89.6 0.16 5.5E-06 44.1 2.5 32 257-289 22-53 (113)
131 3q58_A N-acetylmannosamine-6-p 89.0 1.8 6.3E-05 42.9 10.0 99 33-135 101-210 (229)
132 3lsg_A Two-component response 89.0 0.4 1.4E-05 40.8 4.6 39 250-289 11-49 (103)
133 3fkq_A NTRC-like two-domain pr 88.5 3.3 0.00011 43.2 12.2 106 32-152 20-128 (373)
134 3oou_A LIN2118 protein; protei 87.7 0.5 1.7E-05 40.6 4.4 32 257-289 20-51 (108)
135 1wv2_A Thiazole moeity, thiazo 87.1 3.4 0.00012 42.2 10.7 114 33-151 105-237 (265)
136 3igs_A N-acetylmannosamine-6-p 86.1 3.3 0.00011 41.1 9.9 98 33-134 101-209 (232)
137 1bl0_A Protein (multiple antib 82.7 0.67 2.3E-05 41.2 2.9 32 257-289 26-57 (129)
138 1ccw_A Protein (glutamate muta 82.1 28 0.00097 31.3 14.2 106 40-148 14-132 (137)
139 2l69_A Rossmann 2X3 fold prote 80.5 15 0.00052 32.2 10.4 112 35-153 4-124 (134)
140 2i2x_B MTAC, methyltransferase 80.2 19 0.00063 36.0 12.8 100 32-136 122-231 (258)
141 1y80_A Predicted cobalamin bin 76.5 12 0.0004 35.9 9.6 98 33-135 88-197 (210)
142 1geq_A Tryptophan synthase alp 75.4 6.4 0.00022 38.4 7.6 55 94-148 68-128 (248)
143 1d5y_A ROB transcription facto 75.1 1 3.5E-05 44.7 1.8 33 256-289 17-49 (292)
144 1xi3_A Thiamine phosphate pyro 74.2 21 0.00072 33.5 10.7 68 62-133 114-188 (215)
145 2htm_A Thiazole biosynthesis p 73.2 11 0.00037 38.6 8.7 104 43-151 111-228 (268)
146 3mkl_A HTH-type transcriptiona 72.4 2.8 9.7E-05 36.5 3.8 31 257-289 22-52 (120)
147 2ekc_A AQ_1548, tryptophan syn 71.8 11 0.00037 37.8 8.3 56 94-149 81-143 (262)
148 3ezx_A MMCP 1, monomethylamine 71.4 17 0.00057 35.5 9.4 98 33-135 92-203 (215)
149 3qja_A IGPS, indole-3-glycerol 71.4 44 0.0015 33.8 12.9 87 45-135 150-242 (272)
150 1yad_A Regulatory protein TENI 71.2 36 0.0012 32.5 11.7 70 61-134 115-191 (221)
151 4fo4_A Inosine 5'-monophosphat 71.1 32 0.0011 36.4 12.2 99 32-134 119-239 (366)
152 1qop_A Tryptophan synthase alp 70.6 9.1 0.00031 38.4 7.5 71 79-149 44-143 (268)
153 3ffs_A Inosine-5-monophosphate 69.1 25 0.00086 37.7 10.9 99 33-134 156-274 (400)
154 1r8j_A KAIA; circadian clock p 67.9 57 0.002 33.5 12.5 119 30-153 6-130 (289)
155 3f4w_A Putative hexulose 6 pho 67.3 64 0.0022 30.2 12.4 114 33-149 77-206 (211)
156 2xij_A Methylmalonyl-COA mutas 66.3 51 0.0018 38.4 13.4 119 32-153 603-732 (762)
157 3vnd_A TSA, tryptophan synthas 65.4 12 0.00039 38.1 7.0 55 95-149 83-144 (267)
158 3kp1_A D-ornithine aminomutase 65.3 23 0.0008 40.6 9.9 116 33-153 602-736 (763)
159 1xrs_B D-lysine 5,6-aminomutas 64.7 50 0.0017 33.5 11.6 116 32-152 119-258 (262)
160 1xm3_A Thiazole biosynthesis p 63.2 22 0.00074 35.6 8.6 87 44-134 114-206 (264)
161 1req_A Methylmalonyl-COA mutas 63.1 49 0.0017 38.3 12.3 118 32-152 595-723 (727)
162 3o63_A Probable thiamine-phosp 62.4 47 0.0016 33.0 10.8 85 61-149 140-238 (243)
163 3khj_A Inosine-5-monophosphate 62.1 36 0.0012 35.8 10.4 100 32-134 116-235 (361)
164 1ka9_F Imidazole glycerol phos 60.4 59 0.002 31.4 10.9 78 67-146 155-242 (252)
165 2q5c_A NTRC family transcripti 60.3 95 0.0032 29.6 12.2 54 32-85 3-57 (196)
166 2gek_A Phosphatidylinositol ma 59.3 41 0.0014 33.7 9.9 108 33-152 240-349 (406)
167 3fro_A GLGA glycogen synthase; 59.3 93 0.0032 31.3 12.6 107 32-151 284-394 (439)
168 2lci_A Protein OR36; structura 58.6 25 0.00084 30.9 6.8 39 37-75 81-119 (134)
169 1ep3_A Dihydroorotate dehydrog 58.2 28 0.00096 34.8 8.4 105 44-150 151-291 (311)
170 2bfw_A GLGA glycogen synthase; 56.3 70 0.0024 28.7 10.1 106 33-151 70-179 (200)
171 3usb_A Inosine-5'-monophosphat 55.0 81 0.0028 34.7 12.0 100 32-134 267-387 (511)
172 4dzz_A Plasmid partitioning pr 54.9 20 0.00068 32.9 6.2 53 32-87 29-83 (206)
173 3gbg_A TCP pilus virulence reg 54.1 7.6 0.00026 38.1 3.3 31 257-289 184-214 (276)
174 2gjl_A Hypothetical protein PA 53.6 1.2E+02 0.0041 30.8 12.4 75 57-134 118-200 (328)
175 1thf_D HISF protein; thermophI 53.2 99 0.0034 29.8 11.2 79 66-146 153-241 (253)
176 1ka9_F Imidazole glycerol phos 53.0 59 0.002 31.3 9.6 68 65-134 32-103 (252)
177 2w6r_A Imidazole glycerol phos 52.9 46 0.0016 32.5 8.8 68 66-135 158-229 (266)
178 2c6q_A GMP reductase 2; TIM ba 52.9 99 0.0034 32.3 11.8 101 33-137 132-255 (351)
179 3bo9_A Putative nitroalkan dio 51.4 85 0.0029 32.2 10.9 77 55-134 122-204 (326)
180 1h5y_A HISF; histidine biosynt 51.2 91 0.0031 29.5 10.4 80 65-146 155-244 (253)
181 1rd5_A Tryptophan synthase alp 51.1 19 0.00066 35.5 5.7 55 94-149 82-139 (262)
182 3nav_A Tryptophan synthase alp 51.1 15 0.00053 37.3 5.1 55 94-148 84-145 (271)
183 3r2g_A Inosine 5'-monophosphat 51.0 1.9E+02 0.0067 30.4 13.7 98 32-134 111-227 (361)
184 1y0e_A Putative N-acetylmannos 51.0 64 0.0022 30.5 9.3 86 47-135 108-204 (223)
185 3rht_A (gatase1)-like protein; 50.1 3.9 0.00013 41.5 0.4 79 33-117 4-90 (259)
186 2w6r_A Imidazole glycerol phos 49.9 50 0.0017 32.2 8.5 69 65-135 31-103 (266)
187 3bw2_A 2-nitropropane dioxygen 49.8 1.2E+02 0.0039 31.6 11.7 75 57-134 145-236 (369)
188 1h5y_A HISF; histidine biosynt 49.4 74 0.0025 30.1 9.5 70 63-134 32-105 (253)
189 3iot_A Maltose-binding protein 49.2 3.1 0.00011 43.9 -0.4 43 45-87 20-64 (449)
190 4fe7_A Xylose operon regulator 49.0 9.3 0.00032 39.8 3.2 33 256-289 319-351 (412)
191 1jcn_A Inosine monophosphate d 48.8 1.2E+02 0.004 33.0 12.1 102 33-137 267-390 (514)
192 4avf_A Inosine-5'-monophosphat 48.5 1.1E+02 0.0038 33.4 11.7 99 32-134 240-360 (490)
193 2tps_A Protein (thiamin phosph 48.3 51 0.0018 31.2 8.1 68 62-133 122-198 (227)
194 1ujp_A Tryptophan synthase alp 48.2 20 0.00067 36.4 5.3 55 95-149 80-140 (271)
195 1qo2_A Molecule: N-((5-phospho 47.9 73 0.0025 30.7 9.2 78 65-145 145-239 (241)
196 1eep_A Inosine 5'-monophosphat 47.3 81 0.0028 33.2 10.2 89 43-134 179-284 (404)
197 4adt_A Pyridoxine biosynthetic 47.0 1.2E+02 0.004 31.2 11.0 57 95-151 196-259 (297)
198 1rzu_A Glycogen synthase 1; gl 46.4 1E+02 0.0036 32.0 10.8 107 33-150 320-438 (485)
199 3beo_A UDP-N-acetylglucosamine 45.9 1.3E+02 0.0045 29.7 11.1 59 80-151 283-341 (375)
200 1tqj_A Ribulose-phosphate 3-ep 45.8 29 0.00098 34.0 6.0 82 65-149 18-108 (230)
201 1geq_A Tryptophan synthase alp 45.2 30 0.001 33.5 6.0 83 49-135 125-220 (248)
202 2f9f_A First mannosyl transfer 44.1 1.6E+02 0.0055 26.2 10.5 107 33-152 50-162 (177)
203 3fwz_A Inner membrane protein 43.5 1E+02 0.0035 26.9 8.8 93 32-134 29-124 (140)
204 3tdn_A FLR symmetric alpha-bet 43.4 65 0.0022 31.2 8.1 68 65-134 36-107 (247)
205 3ulq_B Transcriptional regulat 43.3 26 0.0009 29.4 4.5 40 248-288 35-76 (90)
206 3qz6_A HPCH/HPAI aldolase; str 42.7 1.6E+02 0.0056 29.3 11.1 99 49-149 6-110 (261)
207 1oyi_A Double-stranded RNA-bin 42.5 19 0.00065 30.5 3.5 35 248-283 20-54 (82)
208 2qzs_A Glycogen synthase; glyc 42.4 1.2E+02 0.0042 31.4 10.6 108 33-151 321-440 (485)
209 2z6i_A Trans-2-enoyl-ACP reduc 41.5 1.1E+02 0.0039 31.2 10.0 75 57-134 110-190 (332)
210 2y88_A Phosphoribosyl isomeras 41.3 1.4E+02 0.0048 28.5 10.1 77 66-144 151-240 (244)
211 3paj_A Nicotinate-nucleotide p 41.1 2.2E+02 0.0074 29.7 11.9 90 35-132 204-300 (320)
212 1vzw_A Phosphoribosyl isomeras 41.0 1.1E+02 0.0037 29.4 9.3 79 65-145 147-238 (244)
213 1qv9_A F420-dependent methylen 40.3 41 0.0014 34.1 6.0 78 57-137 32-121 (283)
214 3ajx_A 3-hexulose-6-phosphate 40.3 24 0.00082 33.2 4.3 81 65-148 11-98 (207)
215 4fxs_A Inosine-5'-monophosphat 40.1 1.9E+02 0.0064 31.6 11.9 99 32-134 242-362 (496)
216 3c48_A Predicted glycosyltrans 40.0 1.5E+02 0.0051 30.1 10.6 108 33-151 276-390 (438)
217 2v5j_A 2,4-dihydroxyhept-2-ENE 39.2 2.9E+02 0.0098 27.9 12.4 98 49-148 30-132 (287)
218 1v4v_A UDP-N-acetylglucosamine 39.2 2.1E+02 0.0072 28.4 11.4 100 34-151 231-333 (376)
219 3duw_A OMT, O-methyltransferas 39.0 1.3E+02 0.0044 27.9 9.2 72 28-101 78-153 (223)
220 2vws_A YFAU, 2-keto-3-deoxy su 38.5 3.1E+02 0.01 27.2 12.6 98 49-148 9-111 (267)
221 3bul_A Methionine synthase; tr 37.5 1.3E+02 0.0043 34.0 10.1 102 33-136 98-212 (579)
222 1thf_D HISF protein; thermophI 37.5 1.5E+02 0.0053 28.3 9.7 69 65-135 31-103 (253)
223 3c3y_A Pfomt, O-methyltransfer 37.2 1.4E+02 0.0047 28.6 9.3 70 30-101 92-167 (237)
224 1vgv_A UDP-N-acetylglucosamine 36.9 1.7E+02 0.0059 29.0 10.3 42 105-151 300-341 (384)
225 4had_A Probable oxidoreductase 36.6 2.3E+02 0.0077 28.5 11.2 108 30-150 20-134 (350)
226 2iw1_A Lipopolysaccharide core 36.5 1.4E+02 0.0048 29.3 9.5 106 33-151 228-336 (374)
227 3gnn_A Nicotinate-nucleotide p 36.3 2.3E+02 0.0078 29.2 11.1 65 61-132 214-278 (298)
228 2ewt_A BLDD, putative DNA-bind 36.0 27 0.00092 26.6 3.2 33 249-281 12-45 (71)
229 1yxy_A Putative N-acetylmannos 35.0 1.3E+02 0.0044 28.7 8.6 83 47-134 122-214 (234)
230 2v82_A 2-dehydro-3-deoxy-6-pho 35.0 77 0.0026 29.8 7.0 76 52-134 96-175 (212)
231 2oo3_A Protein involved in cat 34.6 27 0.00091 36.0 3.8 56 32-87 112-167 (283)
232 1sui_A Caffeoyl-COA O-methyltr 34.2 3E+02 0.01 26.5 11.3 70 30-101 101-176 (247)
233 3ffs_A Inosine-5-monophosphate 33.7 93 0.0032 33.3 8.0 65 67-134 146-211 (400)
234 3okp_A GDP-mannose-dependent a 33.7 90 0.0031 30.9 7.5 74 67-151 264-343 (394)
235 4e38_A Keto-hydroxyglutarate-a 33.6 1.3E+02 0.0045 29.8 8.6 90 51-143 29-120 (232)
236 3tr6_A O-methyltransferase; ce 33.6 1.3E+02 0.0045 27.8 8.3 72 28-101 84-160 (225)
237 3dr5_A Putative O-methyltransf 33.2 57 0.002 31.2 5.8 68 30-101 78-149 (221)
238 3kts_A Glycerol uptake operon 33.1 53 0.0018 31.9 5.4 62 67-134 117-178 (192)
239 3f4w_A Putative hexulose 6 pho 33.0 48 0.0017 31.1 5.1 83 65-149 11-99 (211)
240 4b8c_D Glucose-repressible alc 32.3 9.6 0.00033 43.5 0.0 9 597-605 275-283 (727)
241 2r60_A Glycosyl transferase, g 31.9 3.2E+02 0.011 28.4 11.8 111 34-151 295-423 (499)
242 3inp_A D-ribulose-phosphate 3- 31.6 69 0.0024 32.0 6.2 83 65-149 41-130 (246)
243 1qdl_B Protein (anthranilate s 31.4 25 0.00086 33.1 2.8 50 34-85 1-51 (195)
244 3tqv_A Nicotinate-nucleotide p 31.1 3.3E+02 0.011 27.9 11.2 65 60-132 202-267 (287)
245 3s83_A Ggdef family protein; s 31.0 1.9E+02 0.0067 27.7 9.3 95 51-148 146-254 (259)
246 2xxa_A Signal recognition part 31.0 78 0.0027 34.0 6.9 53 33-87 129-191 (433)
247 3u81_A Catechol O-methyltransf 31.0 1E+02 0.0034 28.9 7.0 62 29-90 79-145 (221)
248 1rd5_A Tryptophan synthase alp 30.6 99 0.0034 30.3 7.1 42 94-135 189-230 (262)
249 3cbg_A O-methyltransferase; cy 30.6 1.6E+02 0.0055 27.9 8.5 71 29-101 93-168 (232)
250 3l0g_A Nicotinate-nucleotide p 30.4 2.7E+02 0.0093 28.8 10.5 90 36-132 181-276 (300)
251 2avd_A Catechol-O-methyltransf 30.4 1.6E+02 0.0055 27.3 8.3 71 29-101 90-165 (229)
252 3tsm_A IGPS, indole-3-glycerol 30.3 2.6E+02 0.009 28.2 10.3 85 46-134 158-248 (272)
253 1vrd_A Inosine-5'-monophosphat 30.1 3.2E+02 0.011 29.3 11.7 100 32-134 248-368 (494)
254 3iwp_A Copper homeostasis prot 29.7 2E+02 0.0069 29.6 9.3 86 62-148 45-150 (287)
255 4b8c_D Glucose-repressible alc 29.6 16 0.00054 41.7 1.2 8 419-426 22-29 (727)
256 4e5v_A Putative THUA-like prot 29.5 66 0.0023 32.6 5.7 78 32-113 3-93 (281)
257 1qop_A Tryptophan synthase alp 29.4 1.6E+02 0.0056 29.1 8.6 41 95-135 194-234 (268)
258 2px0_A Flagellar biosynthesis 29.4 70 0.0024 32.3 5.9 59 32-93 133-194 (296)
259 2l2q_A PTS system, cellobiose- 29.1 80 0.0027 27.1 5.4 77 31-114 2-84 (109)
260 3qq6_A HTH-type transcriptiona 29.0 33 0.0011 27.3 2.8 32 248-280 13-44 (78)
261 3o07_A Pyridoxine biosynthesis 28.5 87 0.003 32.4 6.3 59 94-152 186-251 (291)
262 3llv_A Exopolyphosphatase-rela 28.1 1.6E+02 0.0055 25.3 7.4 92 33-133 29-121 (141)
263 3qhp_A Type 1 capsular polysac 28.1 1.8E+02 0.0063 25.1 7.8 106 32-151 31-139 (166)
264 2xci_A KDO-transferase, 3-deox 27.9 1E+02 0.0034 31.7 6.9 53 95-152 293-346 (374)
265 3ceu_A Thiamine phosphate pyro 27.8 76 0.0026 30.2 5.6 68 61-133 93-170 (210)
266 1zug_A Phage 434 CRO protein; 27.6 38 0.0013 25.6 2.8 33 248-281 6-38 (71)
267 3ovp_A Ribulose-phosphate 3-ep 27.5 87 0.003 30.7 6.0 69 80-149 135-216 (228)
268 3t76_A VANU, transcriptional r 27.5 35 0.0012 28.6 2.7 32 248-280 27-58 (88)
269 1r69_A Repressor protein CI; g 27.2 39 0.0013 25.4 2.8 33 248-281 4-36 (69)
270 2a6c_A Helix-turn-helix motif; 27.1 47 0.0016 26.6 3.4 33 248-281 21-53 (83)
271 1p0k_A Isopentenyl-diphosphate 27.1 5.1E+02 0.018 26.3 12.2 87 45-134 166-279 (349)
272 2o8x_A Probable RNA polymerase 27.1 64 0.0022 24.5 4.0 27 248-274 21-47 (70)
273 1z0s_A Probable inorganic poly 27.0 36 0.0012 34.8 3.2 93 33-151 29-122 (278)
274 2x6q_A Trehalose-synthase TRET 27.0 4.6E+02 0.016 26.3 11.7 106 33-151 262-378 (416)
275 1ypf_A GMP reductase; GUAC, pu 26.9 5.2E+02 0.018 26.3 13.6 90 41-134 132-238 (336)
276 3tfw_A Putative O-methyltransf 26.5 3E+02 0.01 26.2 9.7 71 28-101 83-156 (248)
277 3c57_A Two component transcrip 26.3 80 0.0027 26.3 4.8 40 248-288 33-74 (95)
278 1jvn_A Glutamine, bifunctional 26.2 3.2E+02 0.011 30.2 10.9 78 67-146 455-543 (555)
279 1u8b_A ADA polyprotein; protei 26.1 14 0.00046 32.7 -0.1 21 224-244 113-133 (133)
280 1fse_A GERE; helix-turn-helix 26.1 83 0.0028 24.1 4.6 24 248-272 17-40 (74)
281 2iuy_A Avigt4, glycosyltransfe 25.9 70 0.0024 31.5 5.1 106 34-151 189-307 (342)
282 2kpj_A SOS-response transcript 25.9 57 0.0019 26.6 3.7 32 248-280 12-43 (94)
283 3lab_A Putative KDPG (2-keto-3 25.8 4.8E+02 0.016 25.6 11.3 81 60-143 18-99 (217)
284 1g5t_A COB(I)alamin adenosyltr 25.7 1.4E+02 0.0049 28.8 7.1 57 67-123 106-169 (196)
285 3vk5_A MOEO5; TIM barrel, tran 25.7 1.1E+02 0.0037 31.6 6.5 56 80-136 200-257 (286)
286 1mu5_A Type II DNA topoisomera 25.6 12 0.00042 40.9 -0.6 100 1-102 113-244 (471)
287 1jhf_A LEXA repressor; LEXA SO 25.5 37 0.0013 31.9 2.8 32 252-283 17-50 (202)
288 1qpo_A Quinolinate acid phosph 25.3 3.9E+02 0.013 27.1 10.6 93 36-133 168-267 (284)
289 1je8_A Nitrate/nitrite respons 25.2 91 0.0031 25.2 4.8 24 248-272 27-50 (82)
290 2f6u_A GGGPS, (S)-3-O-geranylg 25.1 62 0.0021 32.2 4.4 58 67-134 23-83 (234)
291 3khj_A Inosine-5-monophosphate 25.0 3.3E+02 0.011 28.5 10.3 65 67-134 107-172 (361)
292 3omt_A Uncharacterized protein 25.0 23 0.00078 27.5 1.0 33 248-281 11-43 (73)
293 1h1y_A D-ribulose-5-phosphate 25.0 71 0.0024 30.8 4.8 67 67-134 126-200 (228)
294 3ot5_A UDP-N-acetylglucosamine 24.9 4.8E+02 0.016 27.0 11.6 43 105-152 319-361 (403)
295 1dxe_A 2-dehydro-3-deoxy-galac 24.8 5E+02 0.017 25.4 11.5 98 49-148 10-112 (256)
296 1rpx_A Protein (ribulose-phosp 24.7 1.8E+02 0.0062 27.6 7.7 83 65-149 24-114 (230)
297 2jt1_A PEFI protein; solution 24.7 44 0.0015 27.6 2.8 36 248-284 7-49 (77)
298 2b5a_A C.BCLI; helix-turn-heli 24.6 46 0.0016 25.6 2.8 30 250-280 15-44 (77)
299 3mz0_A Inositol 2-dehydrogenas 24.6 5.4E+02 0.018 25.7 12.4 106 33-150 2-114 (344)
300 3jr2_A Hexulose-6-phosphate sy 24.6 53 0.0018 31.5 3.8 84 64-149 16-105 (218)
301 3l4e_A Uncharacterized peptida 24.5 2.8E+02 0.0094 26.6 8.9 62 33-102 27-98 (206)
302 2fhp_A Methylase, putative; al 24.5 3.6E+02 0.012 23.6 9.5 68 34-101 68-138 (187)
303 2r1j_L Repressor protein C2; p 24.3 36 0.0012 25.4 2.1 32 248-280 8-39 (68)
304 3l9w_A Glutathione-regulated p 24.3 1.6E+02 0.0055 31.3 7.8 93 32-134 26-121 (413)
305 1y7y_A C.AHDI; helix-turn-heli 24.2 47 0.0016 25.2 2.8 31 249-280 17-47 (74)
306 3rc1_A Sugar 3-ketoreductase; 24.2 5.6E+02 0.019 25.8 13.7 104 33-150 27-137 (350)
307 1x57_A Endothelial differentia 24.0 69 0.0024 25.8 3.9 33 248-281 16-48 (91)
308 2xi8_A Putative transcription 23.9 34 0.0011 25.4 1.8 32 249-281 5-36 (66)
309 3ezy_A Dehydrogenase; structur 23.9 5.5E+02 0.019 25.6 12.2 45 106-150 64-112 (344)
310 2hnk_A SAM-dependent O-methylt 23.7 3.2E+02 0.011 25.6 9.2 70 30-101 82-167 (239)
311 3axs_A Probable N(2),N(2)-dime 23.7 2.7E+02 0.0092 29.5 9.4 77 34-116 78-160 (392)
312 2d00_A V-type ATP synthase sub 23.7 3.6E+02 0.012 23.4 10.2 76 33-114 3-80 (109)
313 1zh8_A Oxidoreductase; TM0312, 23.6 5.7E+02 0.019 25.6 11.8 105 32-149 17-129 (340)
314 2qfm_A Spermine synthase; sper 23.4 3.8E+02 0.013 28.3 10.4 68 34-101 212-296 (364)
315 1x3u_A Transcriptional regulat 23.3 1.1E+02 0.0038 23.8 4.9 25 248-273 22-46 (79)
316 1viz_A PCRB protein homolog; s 23.1 1E+02 0.0036 30.6 5.7 54 67-134 23-83 (240)
317 2vxz_A Pyrsv_GP04; viral prote 23.1 54 0.0018 31.0 3.3 36 248-283 14-51 (165)
318 2fli_A Ribulose-phosphate 3-ep 23.0 80 0.0027 29.7 4.7 104 46-150 98-218 (220)
319 3s8q_A R-M controller protein; 22.9 49 0.0017 26.1 2.7 30 249-279 15-44 (82)
320 3tha_A Tryptophan synthase alp 22.9 57 0.002 32.8 3.7 55 94-151 78-138 (252)
321 1j8m_F SRP54, signal recogniti 22.9 29 0.00098 35.3 1.6 54 32-87 125-188 (297)
322 1qbj_A Protein (double-strande 22.8 48 0.0016 27.6 2.7 35 248-283 13-51 (81)
323 2w7n_A TRFB transcriptional re 22.7 77 0.0026 27.7 4.1 53 229-283 6-58 (101)
324 2pyy_A Ionotropic glutamate re 22.7 2E+02 0.0069 25.5 7.2 49 32-87 111-159 (228)
325 1qb3_A Cyclin-dependent kinase 22.6 18 0.00062 33.8 0.0 15 323-337 46-60 (150)
326 3ic5_A Putative saccharopine d 22.6 2.6E+02 0.009 22.5 7.4 54 32-88 4-58 (118)
327 2gjl_A Hypothetical protein PA 22.5 2.9E+02 0.0099 27.9 9.1 62 65-135 84-145 (328)
328 3jy6_A Transcriptional regulat 22.4 3.3E+02 0.011 25.7 9.1 65 44-115 24-94 (276)
329 3lp8_A Phosphoribosylamine-gly 22.4 2.1E+02 0.0071 30.4 8.3 55 29-86 17-90 (442)
330 2al1_A Enolase 1, 2-phospho-D- 22.3 1.1E+02 0.0038 33.0 6.1 81 65-148 274-361 (436)
331 2dul_A N(2),N(2)-dimethylguano 21.9 3.1E+02 0.011 28.7 9.4 76 34-115 72-165 (378)
332 3ec7_A Putative dehydrogenase; 21.8 5E+02 0.017 26.3 10.9 106 33-151 23-136 (357)
333 4fxs_A Inosine-5'-monophosphat 21.7 1.8E+02 0.0061 31.7 7.7 64 68-134 234-299 (496)
334 3pfn_A NAD kinase; structural 21.6 92 0.0031 33.0 5.2 102 35-155 40-167 (365)
335 3tqv_A Nicotinate-nucleotide p 21.5 1.8E+02 0.0061 29.9 7.1 68 80-149 169-239 (287)
336 4hkt_A Inositol 2-dehydrogenas 21.5 6E+02 0.021 25.1 12.2 104 33-150 3-111 (331)
337 3u3x_A Oxidoreductase; structu 21.4 4.3E+02 0.015 26.9 10.3 104 33-149 26-135 (361)
338 1tc3_C Protein (TC3 transposas 21.4 52 0.0018 22.6 2.3 32 250-283 14-45 (51)
339 1gox_A (S)-2-hydroxy-acid oxid 21.4 2.9E+02 0.01 28.7 9.0 85 47-134 215-308 (370)
340 1qgp_A Protein (double strande 21.4 24 0.00081 28.9 0.5 35 248-283 17-55 (77)
341 1ws6_A Methyltransferase; stru 21.3 3.6E+02 0.012 23.2 8.4 68 34-102 64-132 (171)
342 2jn6_A Protein CGL2762, transp 21.3 83 0.0029 25.9 3.9 33 251-284 15-48 (97)
343 1p4w_A RCSB; solution structur 21.2 81 0.0028 26.9 3.9 40 248-288 40-81 (99)
344 2xzm_U Ribosomal protein L7AE 21.2 3.1E+02 0.011 24.5 7.9 74 38-113 1-74 (126)
345 2jjm_A Glycosyl transferase, g 21.0 1.6E+02 0.0055 29.5 6.8 65 80-151 285-349 (394)
346 1lst_A Lysine, arginine, ornit 21.0 2E+02 0.0067 26.0 6.9 53 32-87 110-162 (239)
347 2wiu_B HTH-type transcriptiona 20.9 69 0.0023 25.3 3.2 31 250-281 17-47 (88)
348 1tqx_A D-ribulose-5-phosphate 20.8 1.7E+02 0.0057 28.7 6.6 81 52-134 109-200 (227)
349 3p9n_A Possible methyltransfer 20.8 3.5E+02 0.012 24.2 8.5 67 34-102 68-138 (189)
350 3f6w_A XRE-family like protein 20.7 44 0.0015 26.3 2.0 30 250-280 19-48 (83)
351 3bs3_A Putative DNA-binding pr 20.7 41 0.0014 25.8 1.8 32 248-280 13-44 (76)
352 2k9q_A Uncharacterized protein 20.7 44 0.0015 26.1 2.0 31 249-280 6-36 (77)
353 3ctl_A D-allulose-6-phosphate 20.4 1.7E+02 0.0059 28.6 6.6 84 65-149 14-102 (231)
354 2qjg_A Putative aldolase MJ040 20.4 3.7E+02 0.013 26.1 9.1 68 79-150 179-257 (273)
355 4avf_A Inosine-5'-monophosphat 20.2 2.1E+02 0.0073 31.1 7.9 65 67-134 231-297 (490)
356 3l0g_A Nicotinate-nucleotide p 20.2 2.3E+02 0.0078 29.4 7.6 52 96-149 196-248 (300)
357 1pdn_C Protein (PRD paired); p 20.1 95 0.0032 25.9 4.1 32 250-283 26-57 (128)
358 2j9r_A Thymidine kinase; TK1, 20.1 61 0.0021 31.8 3.2 78 32-113 55-135 (214)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=1.1e-24 Score=201.55 Aligned_cols=120 Identities=29% Similarity=0.576 Sum_probs=111.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD 106 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~ 106 (637)
..++|||||||++..|+.++.+|+..||. |.+|.++.+|++++++.. |||||+|++||+|||++++++||.. ++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 46789999999999999999999999985 778999999999999876 9999999999999999999999843 57
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+|||++|++.+.+.+.+|++.||++||.||++.++|...+++++++
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988654
No 2
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=3.7e-21 Score=168.40 Aligned_cols=118 Identities=30% Similarity=0.488 Sum_probs=110.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
+.+||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++...++|||++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 358999999999999999999999999999999999999998765 999999999999999999999987778999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|+..+.....++++.||++||.||++.++|...+++++++
T Consensus 80 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred ECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999887653
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=4.4e-21 Score=168.74 Aligned_cols=116 Identities=27% Similarity=0.432 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPVI 110 (637)
.+||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++++.. +++|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999753 579999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
++|+..+.+...++++.||++||.||++.++|...++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988763
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.86 E-value=1.4e-20 Score=168.55 Aligned_cols=119 Identities=32% Similarity=0.542 Sum_probs=111.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~IPV 109 (637)
..+||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999999999999999999999999999999999999998866 999999999999999999999975 357999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|++|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988764
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=2.9e-23 Score=189.82 Aligned_cols=113 Identities=27% Similarity=0.393 Sum_probs=102.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
..+|||||||++.+++.++.+|+..||.|. +|.++.+|++++++.. ||+||+|++||+|||+++++++++ .++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCEE
Confidence 568999999999999999999999999975 7999999999999876 999999999999999999999986 579999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
++|++++.+.. .+.|+.+||.||++.++|..+++++.
T Consensus 84 ~lTa~~~~~~~---~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATGYGSKGLD---TRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCTTCTTSCC---SSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCccHHHH---HhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 99999876543 46799999999999999999887654
No 6
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.85 E-value=1.5e-20 Score=167.80 Aligned_cols=120 Identities=23% Similarity=0.402 Sum_probs=107.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy-~V~~asng~EALelLre~---~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~ 106 (637)
.++||||||++..++.++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||++||++++++|+. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 47899999999999999999998886 588999999999998761 123999999999999999999999975 357
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+|||++|++.+.+...++++.||++||.||++.++|..++++++..
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999887543
No 7
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.85 E-value=1.5e-20 Score=181.93 Aligned_cols=120 Identities=29% Similarity=0.474 Sum_probs=107.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHc-----------CCCceEEEEeCCCCCCCHHHHHH
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER-----------KGCFDVVLSDVHMPDMDGFKLLE 99 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy-~V~~asng~EALelLre~-----------~~~pDLVIlDI~MPdmDGlELLe 99 (637)
.+++||||||++..++.++.+|+..+| .|..+.++.+|++.++.. ...|||||+|+.||++||+++++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~ 139 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 568999999999999999999999998 899999999999999874 12399999999999999999999
Q ss_pred HHhcc-----CCCcEEEEeccC-CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 100 HIGLE-----MDLPVIMMSADG-RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 100 ~Ir~~-----~~IPVIILSa~~-d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|+.. +.+|||++|++. +.+.+.++++.|+++||.||++ +|..+++++++++
T Consensus 140 ~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 140 EIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 99753 789999999998 8888999999999999999999 8999998887654
No 8
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.83 E-value=8.2e-20 Score=165.19 Aligned_cols=120 Identities=28% Similarity=0.450 Sum_probs=106.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-----cC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-----EM 105 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-----~~ 105 (637)
..++|||||||++..++.++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 35689999999999999999999999999999999999999998765 999999999999999999999973 24
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 106 ~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.+|||++|+..+.+...++++.||++||.||++.++|..+++++...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887543
No 9
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.83 E-value=1.1e-19 Score=160.61 Aligned_cols=118 Identities=29% Similarity=0.554 Sum_probs=107.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
++|||||||++..++.++.+|+..+|. +..+.++.+|++.+.... .||+||+|+.||+++|++++++++.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999998884 889999999999887642 49999999999999999999999753 5789
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
||++|++.+.+...++++.||++||.||++.++|..+++.++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
No 10
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.83 E-value=2.1e-19 Score=155.93 Aligned_cols=118 Identities=20% Similarity=0.375 Sum_probs=110.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
.+||||||++..++.++.+|...+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999988999999999999999998765 9999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887653
No 11
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.83 E-value=2.5e-19 Score=154.86 Aligned_cols=118 Identities=27% Similarity=0.407 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999998999999999999999998765 999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+...++++.|+++||.||++.++|...+++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887653
No 12
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.83 E-value=1.9e-19 Score=155.13 Aligned_cols=117 Identities=26% Similarity=0.470 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
.+||||||++..++.++..|...+|.|..+.++.++++.++... ||+||+|+.||+++|++++++++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 48999999999999999999998999999999999999998766 9999999999999999999999877889999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+..+.....++++.||.+||.||++.++|...+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887654
No 13
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.83 E-value=1.8e-19 Score=164.53 Aligned_cols=122 Identities=25% Similarity=0.397 Sum_probs=113.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
.+++||||||++..++.++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 3579999999999999999999999999999999999999998765 9999999999999999999999754 6799
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
||++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999877643
No 14
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=2.9e-20 Score=175.63 Aligned_cols=119 Identities=21% Similarity=0.353 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
+++||||||++..++.++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+++|||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 579999999999999999999999999999999999999998765 999999999999999999999975 57899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|++.+.+.+.+|++.||++||.||++.++|..+++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998876554
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=2.6e-19 Score=158.83 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
.++||||||++..++.++.+|+..+|.|..+.++.++++.++... ||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 368999999999999999999988999999999999999998765 999999999999999999999974 46899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999987664
No 16
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.82 E-value=2.5e-19 Score=172.01 Aligned_cols=161 Identities=17% Similarity=0.283 Sum_probs=129.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~-gy~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
.+++||||||++..++.++.+|+.. ++.+ ..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4589999999999999999999986 4777 78999999999998876 999999999999999999999975 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc--------ccCCccccccCCCChhhHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE--------NSGSLEETDHHKRGSDEIE 180 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~--------~~~~le~~~~~kl~~~Eie 180 (637)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++......... ............++.+|.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 161 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 161 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999876432111100 0000001122357888888
Q ss_pred HHhhhccCCcchhh
Q 006649 181 YASSVNEGTEGTFK 194 (637)
Q Consensus 181 ~lssv~eg~~~~vk 194 (637)
++..+.+|......
T Consensus 162 vl~~l~~g~s~~~I 175 (215)
T 1a04_A 162 ILKLIAQGLPNKMI 175 (215)
T ss_dssp HHHHHHTTCCHHHH
T ss_pred HHHHHHcCCCHHHH
Confidence 88888777644333
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.82 E-value=2.7e-19 Score=156.78 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
+.+||||||++..++.++.+|...+|.+..+.++.++++.+.... ||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999988999999999999999987655 999999999999999999999975 46899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+|+..+.+.+.++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654
No 18
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.82 E-value=3.3e-19 Score=154.93 Aligned_cols=118 Identities=20% Similarity=0.413 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
.+||||||++..++.++.+|+..+|.|..+.++.++++.+.... ||+||+|+.||+++|++++++++..+.+|+|++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999988999999999999999998765 9999999999999999999999866789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887653
No 19
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.82 E-value=3.8e-19 Score=175.84 Aligned_cols=120 Identities=33% Similarity=0.541 Sum_probs=113.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVI 110 (637)
..++||||||++..++.++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+.. +.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4589999999999999999999999999999999999999998876 9999999999999999999999754 689999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
No 20
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=2.4e-19 Score=160.43 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
.++||||||++..++.++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 469999999999999999999998999999999999999998765 999999999999999999999986568999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654
No 21
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.82 E-value=2.3e-19 Score=156.46 Aligned_cols=116 Identities=25% Similarity=0.466 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
.+||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999998999999999999999998776 999999999999999999999975 478999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|+..+.+...++++.|+.+||.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987653
No 22
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.82 E-value=2.9e-19 Score=154.10 Aligned_cols=118 Identities=28% Similarity=0.380 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
++||||||++..++.++.+|...++.+..+.++.+++..+.... ||+||+|+.||+++|++++++++..+.+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 68999999999999999999998999999999999999888765 9999999999999999999999866789999999
Q ss_pred ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+..+.+...++++.|+.+||.||++.++|...+++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887653
No 23
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.82 E-value=3.1e-19 Score=154.47 Aligned_cols=116 Identities=28% Similarity=0.485 Sum_probs=107.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
+++||||||++..+..++.+|+..+|. +..+.++.+|++.++... ||+||+|+.||+++|+++++++++ .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 478999999999999999999988998 568999999999998876 999999999999999999999974 4789999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
++|+..+.+...++++.||.+||.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988763
No 24
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.82 E-value=3.9e-19 Score=161.53 Aligned_cols=122 Identities=28% Similarity=0.443 Sum_probs=114.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... |||||+|+.||+++|++++++|+. .+.+|||
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 4579999999999999999999999999999999999999998876 999999999999999999999974 4789999
Q ss_pred EEeccCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~G-A~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
++|+..+.+...++++.| |++||.||++.++|..+++++++++..
T Consensus 91 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 91 LLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp EECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 999999999999999999 999999999999999999999876543
No 25
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.82 E-value=6.5e-19 Score=157.29 Aligned_cols=123 Identities=26% Similarity=0.464 Sum_probs=113.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
.++||||||++..++.++.+|...++.|..+.++.+|++.+......||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 47999999999999999999999999999999999999999853335999999999999999999999974 46899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
+|+..+.+...++++.||++||.||++.++|..+++++++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887643
No 26
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=5.7e-19 Score=154.46 Aligned_cols=119 Identities=32% Similarity=0.546 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~I 107 (637)
..++||||||++..++.++.+|...++ .|..+.++.++++.+.... ||+||+|+.||+++|++++++++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457999999999999999999998888 7899999999999987654 999999999999999999999975 3578
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 27
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.81 E-value=1.3e-19 Score=180.41 Aligned_cols=154 Identities=26% Similarity=0.353 Sum_probs=129.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
.++||||||++..++.|+.+|+..++.|..+.++.+|++.+.... |||||+|+.||++||++++++|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 369999999999999999999999999999999999999998876 999999999999999999999988788999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc-----ccC--CccccccCCCChhhHHHHhhh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSG--SLEETDHHKRGSDEIEYASSV 185 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~-----~~~--~le~~~~~kl~~~Eie~lssv 185 (637)
|+..+.+.+.+|++.||++||.||++.++|..+++.++++......... ... .........++.+|.+++..+
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll 194 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876432211100 000 001112235788999998888
Q ss_pred ccC
Q 006649 186 NEG 188 (637)
Q Consensus 186 ~eg 188 (637)
.++
T Consensus 195 ~~g 197 (249)
T 3q9s_A 195 IRQ 197 (249)
T ss_dssp HHS
T ss_pred HHC
Confidence 776
No 28
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.81 E-value=5.3e-19 Score=160.30 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHc-----CCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGLE 104 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre~-----~~~pDLVIlDI~MPdmDGlELLe~Ir~~ 104 (637)
..++||||||++..++.++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||++||+++++.|+..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 458999999999999999999998776 788999999999998752 1249999999999999999999999754
Q ss_pred ---CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 105 ---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 105 ---~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+.+|||++|+..+.+.+.++++.||.+||.||++.++|..+++++.+..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999987654
No 29
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=2.6e-19 Score=156.88 Aligned_cols=119 Identities=27% Similarity=0.471 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~I 107 (637)
..++||||||++..++.++.+|...+| .|..+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 457999999999999999999998888 7889999999999998765 9999999999999999999999753 578
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|||++|+..+.+.+.++++.|+.+||.||++.++|..++++++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988754
No 30
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.81 E-value=1.2e-19 Score=162.57 Aligned_cols=122 Identities=21% Similarity=0.297 Sum_probs=111.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPd-mDGlELLe~Ir~~~~IPVII 111 (637)
+++||||||++..++.++.+|...+|.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+..+.+|||+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 57999999999999999999999999999999999999999862 23999999999995 99999999998778999999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
+|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999988888999999999999999999999999999887643
No 31
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.81 E-value=3.9e-19 Score=157.63 Aligned_cols=122 Identities=21% Similarity=0.366 Sum_probs=113.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+++||||||++..++.++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4589999999999999999999998999999999999999998876 999999999999999999999975 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887643
No 32
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.81 E-value=1e-19 Score=173.42 Aligned_cols=156 Identities=23% Similarity=0.364 Sum_probs=126.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
..+||||||++..++.++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||++||+++++.++. .+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 458999999999999999999998999999999999999887654 999999999999999999999975 46899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCccccccCCCChhhHHHHhhhccCCcc
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~~~le~~~~~kl~~~Eie~lssv~eg~~~ 191 (637)
+|++.+.+.+.++++.||++||.||++.++|..++++++++............ ........++.+|.+++..+.+|...
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~Lt~rE~~vl~~l~~g~s~ 160 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQD-QLEQLFSSLTGREQQVLQLTIRGLMN 160 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCHHHHHHHHHHTTTCCH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHcCCcH
Confidence 99999998999999999999999999999999999998876432211100000 00111234677888888777666433
No 33
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.81 E-value=1.1e-19 Score=162.11 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=111.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH-cCCCceEEEEeCCCC-CCCHHHHHHHHhc---cC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EM 105 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~-~gy~V~~asng~EALelLre-~~~~pDLVIlDI~MP-dmDGlELLe~Ir~---~~ 105 (637)
.+++||||||++..+..++.+|.. .+|.|..+.++.+|++.+.. .. ||+||+|+.|| +++|++++++|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 357999999999999999999999 89999999999999999987 55 99999999999 9999999999975 47
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 106 ~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
.+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999887653
No 34
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.81 E-value=8e-19 Score=154.35 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC-----CCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK-----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre~~-----~~pDLVIlDI~MPdmDGlELLe~Ir~~- 104 (637)
+++||||||++..++.++.+|...++ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.|+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999888 8999999999999998610 249999999999999999999999864
Q ss_pred --CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 105 --~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999987653
No 35
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.81 E-value=5.5e-19 Score=156.94 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=108.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
.++||||||++..++.++.+|+..+ +.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 3689999999999999999999765 56788999999999998776 999999999999999999999975 468999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887543
No 36
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.81 E-value=6.3e-19 Score=157.93 Aligned_cols=122 Identities=17% Similarity=0.302 Sum_probs=112.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~--V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~ 106 (637)
.+++||||||++..++.++.+|...++. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 3579999999999999999999998877 889999999999998765 999999999999999999999986 468
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHhhc
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 155 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPi-s~eEL~~~Lq~Vlrk~~~ 155 (637)
+|||++|+..+.+...++++.||++||.||+ +.++|..++++++++...
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999887643
No 37
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.81 E-value=2.9e-19 Score=159.07 Aligned_cols=122 Identities=25% Similarity=0.392 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~IP 108 (637)
..++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 3579999999999999999999999999999999999999998876 999999999999999999999975 46899
Q ss_pred EEEEeccCCHHHHH-HHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 109 VIMMSADGRVSAVM-RGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 109 VIILSa~~d~e~a~-kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
||++|+..+.+... ++++.||++||.||++.++|..++++++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 99999988887777 899999999999999999999999999887643
No 38
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.80 E-value=4e-19 Score=154.26 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=102.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPVI 110 (637)
.+||||||++..++.++.+|+..++.+..+.++.+|++.++... ||+||+|+.||+++|++++++|+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999998999999999999999998766 9999999999999999999999753 578999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
++|++.+.+...++++.||.+||.||++.++|..+++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999988888999999999999999999999999988764
No 39
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.80 E-value=7.7e-19 Score=156.28 Aligned_cols=120 Identities=19% Similarity=0.309 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-----cCCCceEEEEeCCCCCCCHHHHHHHHhc-
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-----RKGCFDVVLSDVHMPDMDGFKLLEHIGL- 103 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre-----~~~~pDLVIlDI~MPdmDGlELLe~Ir~- 103 (637)
..++||||||++..+..++.+|...++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 568999999999999999999999988 89999999999999987 54 999999999999999999999975
Q ss_pred ----cCCCcEEEEeccCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 104 ----EMDLPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 104 ----~~~IPVIILSa~~d~e~a~kAl~~G-A~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
.+.+|||++|+..+.+...+++..| |++||.||++.++|..+++++....
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999 9999999999999999999876543
No 40
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.80 E-value=5.2e-19 Score=155.81 Aligned_cols=119 Identities=28% Similarity=0.469 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~IP 108 (637)
+++||||||++..++.++.+|... ++.+. .+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 468999999999999999999987 78765 8999999999998776 999999999999999999999975 35788
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999887643
No 41
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.80 E-value=1e-18 Score=154.71 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=110.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCc
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP 108 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~--~~IP 108 (637)
+.+++||||||++..++.++.+|...+|.|..+.++.+++..+.... .||+||+|+.||+++|++++++|+.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 34679999999999999999999999999999999999999987642 49999999999999999999999864 6799
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
||++|+..+.+...++++.|+++||.||++.++|..+++++..+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999887654
No 42
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.80 E-value=9.5e-19 Score=158.47 Aligned_cols=122 Identities=23% Similarity=0.407 Sum_probs=109.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-------cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-------RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre-------~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
.+++||||||++..++.++.+|...++ .|..+.++.+|++.++. ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357999999999999999999999888 89999999999999961 123599999999999999999999997
Q ss_pred c---cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 103 L---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 103 ~---~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
. .+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5 36799999999999999999999999999999999999999999986543
No 43
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=3.7e-19 Score=156.42 Aligned_cols=120 Identities=26% Similarity=0.445 Sum_probs=103.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.++|||||||++..++.++.+|...++.+..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4679999999999999999999999999999999999999997665 999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPi-s~eEL~~~Lq~Vlrk~ 153 (637)
++|+..+.+...++++.||++||.||+ +.++|..+++++++++
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999987654
No 44
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.80 E-value=2e-19 Score=160.37 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir~-~~~IP 108 (637)
..++||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+ ++|++++++|+. .+.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 3479999999999999999999999999999999999999887655 999999999999 999999999975 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
||++|+..+.+.+.++++.||++||.||++.++|..++++++.+..
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999987764
No 45
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.80 E-value=7.1e-19 Score=159.31 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~I 107 (637)
..++|||||||++..++.++.+|...+ +.|..+.++.+|++.++... |||||+|+.||+++|+++++.|+. .+.+
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLET 95 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCSC
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 456899999999999999999999876 78899999999999998765 999999999999999999999975 4689
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|||++|+..+.+...++++.||++||.||++.++|..+++++++++.
T Consensus 96 ~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 96 KVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 99999999999999999999999999999999999999999887653
No 46
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.80 E-value=6.6e-19 Score=169.50 Aligned_cols=155 Identities=24% Similarity=0.425 Sum_probs=127.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVII 111 (637)
+++||||||++..++.++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +++|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 579999999999999999999998999999999999999998765 9999999999999999999999754 7899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCc----------cccccCCCChhhHHH
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL----------EETDHHKRGSDEIEY 181 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~~~l----------e~~~~~kl~~~Eie~ 181 (637)
+|++.+.+...++++.||++||.||++.++|..+++.++++.............. .......++.+|.++
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~v 159 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQI 159 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEEECCCHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccccCceEEECCEEEecccCEEEECCEEEecCHHHHHH
Confidence 9999999999999999999999999999999999999988754322110000000 011123578888888
Q ss_pred HhhhccCC
Q 006649 182 ASSVNEGT 189 (637)
Q Consensus 182 lssv~eg~ 189 (637)
+..+.++.
T Consensus 160 L~~l~~~~ 167 (225)
T 1kgs_A 160 LEYLVMNK 167 (225)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 87776663
No 47
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.80 E-value=3.4e-19 Score=156.02 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=106.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~IPV 109 (637)
+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999998876 999999999999999999999975 467999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|+..+.+. .+++..||++||.||++.++|...+++..+.
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 99999988887 8899999999999999999999999987554
No 48
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.80 E-value=3e-19 Score=157.46 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+|||||||++..++.++.+|...++.+. .+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999987 8999999999998876 999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999999999999887653
No 49
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.80 E-value=1.1e-18 Score=154.31 Aligned_cols=119 Identities=28% Similarity=0.501 Sum_probs=110.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVII 111 (637)
+.+||||||++..+..++.+|...+|.|..+.++.++++.++... ||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 469999999999999999999998999999999999999998776 9999999999999999999999754 6799999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999998888899999999999999999999999999987653
No 50
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=8.1e-19 Score=157.25 Aligned_cols=118 Identities=26% Similarity=0.453 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
.+||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999988999999999999999998876 999999999999999999999975 467899999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 51
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=1.9e-18 Score=153.21 Aligned_cols=121 Identities=26% Similarity=0.346 Sum_probs=111.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRR-CLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~-~gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~ 106 (637)
.+++||||||++..++.++.+|.. .+|. |..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 468999999999999999999998 8998 999999999999998866 999999999999999999999976 467
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+|||++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999987653
No 52
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.4e-18 Score=154.66 Aligned_cols=123 Identities=23% Similarity=0.373 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC--------CCceEEEEeCCCCCCCHHHHHHHH
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK--------GCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre~~--------~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
.+++||||||++..++.++.+|...++ .|..+.++.+|++.++... ..||+||+|+.||+++|++++++|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 457999999999999999999999888 8999999999999998610 249999999999999999999999
Q ss_pred hcc---CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 102 GLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 102 r~~---~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+.. +.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++...
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 864 57999999999999999999999999999999999999999999987653
No 53
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.80 E-value=8.7e-19 Score=157.18 Aligned_cols=122 Identities=18% Similarity=0.370 Sum_probs=113.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~I 107 (637)
..+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 35689999999999999999999998999999999999999998876 999999999999999999999975 4689
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987653
No 54
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.80 E-value=7.7e-19 Score=160.88 Aligned_cols=120 Identities=26% Similarity=0.380 Sum_probs=110.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
..+++||||||++..++.|+.+|+..+|.+. .+.++.+|++.+++....|||||+|+.||+++|++++++|+. .+.+|
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 3457999999999999999999999999988 999999999999887212899999999999999999999974 57899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
||++|+..+.+...++++.||++||.||++.++|..++++++
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998765
No 55
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.80 E-value=6.6e-19 Score=168.13 Aligned_cols=122 Identities=26% Similarity=0.361 Sum_probs=112.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
++..++||||||++..+..++.+|...+|.|. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.....|
T Consensus 10 ~~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~p 87 (205)
T 1s8n_A 10 AAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAP 87 (205)
T ss_dssp -CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSC
T ss_pred cCCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCC
Confidence 44557999999999999999999999899987 8999999999998876 99999999999999999999998665679
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
||++|++.+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 56
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.80 E-value=8.9e-19 Score=154.21 Aligned_cols=120 Identities=26% Similarity=0.344 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
..++||||||++..++.++.+|+ .++.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+.. +.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 35799999999999999999999 7899999999999999998876 9999999999999999999999753 5799
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
||++|+..+.+. .++++.|+++||.||++.++|..++++++++...
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 999999988877 8999999999999999999999999999887643
No 57
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.79 E-value=1.1e-19 Score=186.45 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MP-dmDGlELLe~Ir~~~~IPVI 110 (637)
+.+||||||++..+..++.+|+..||.|. .+.++.+|++.+.... |||||+|+.|| +|||+++++.||...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 9999999999999876 99999999999 79999999999866699999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
++|++.+ ...+|++.||++||.||++.++|..+++++++...
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9999864 46779999999999999999999999999987653
No 58
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.79 E-value=1.2e-18 Score=175.17 Aligned_cols=124 Identities=30% Similarity=0.387 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
..++||||||++..++.+...|+..++.|..+.++.+|++.++... .||+||+|+.||++||++++++||.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 4689999999999999999999999999999999999999998642 38999999999999999999999753 3689
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcc
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE 156 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~ 156 (637)
||++|++.+.+...++++.||++||.||++.++|...++++++.....
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~ 249 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQF 249 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhhh
Confidence 999999999999999999999999999999999999999998776433
No 59
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.79 E-value=2.4e-18 Score=152.33 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=112.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MP-dmDGlELLe~Ir~~~~IPV 109 (637)
.+++||||||++..++.++.+|...+|.+. .+.++.+|++.++... ||+||+|+.|| +++|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 457999999999999999999998899998 5999999999998876 99999999998 7999999999975588999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999987654
No 60
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.79 E-value=2.3e-19 Score=156.36 Aligned_cols=118 Identities=27% Similarity=0.445 Sum_probs=109.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPV 109 (637)
.++||||||++..++.++.+|...++.+..+.++.++++.+.... ||+||+|+.||+++|++++++++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSC--CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 368999999999999999999998999999999999999887554 9999999999999999999999754 67999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|+..+.+...++++.||.+||.||++.++|...+++++++
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
No 61
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.79 E-value=6.3e-19 Score=158.28 Aligned_cols=121 Identities=18% Similarity=0.307 Sum_probs=111.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHH--cCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRE--RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~g-y~V~~asng~EALelLre--~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~ 106 (637)
..+.+||||||++..++.|+.+|...+ |.|..+.++.+++..+.+ .. |||||+|+.||+++|++++++|+. .+.
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 95 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRLHPG 95 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHHCTT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHhCCC
Confidence 456899999999999999999999888 999999999988887764 44 999999999999999999999974 468
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 96 LTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp CEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999988764
No 62
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=3.1e-18 Score=155.08 Aligned_cols=123 Identities=25% Similarity=0.334 Sum_probs=111.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~--V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~ 106 (637)
.+.+.|||||||++..++.++.+|...++. |..+.++.+|++.++... |||||+|+.||+++|+++++.|+. .+.
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYELP 89 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCS
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 456789999999999999999999988743 568999999999998876 999999999999999999999974 468
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 999999999999999999999999999999999999999999987653
No 63
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.79 E-value=1.2e-18 Score=168.69 Aligned_cols=154 Identities=24% Similarity=0.346 Sum_probs=127.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
.++||||||++..++.++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+..+.+|||++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 369999999999999999999998999999999999999998776 999999999999999999999987688999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccc----cccccCCc----------cccccCCCChhh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENK----EHENSGSL----------EETDHHKRGSDE 178 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k----~~~~~~~l----------e~~~~~kl~~~E 178 (637)
|+..+.+...++++.||++||.||++.++|..++++++++...... ........ .......++.+|
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 161 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKE 161 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHHH
T ss_pred eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEEEECCeeeecCHHH
Confidence 9999999999999999999999999999999999999876422111 00000000 011224578888
Q ss_pred HHHHhhhccC
Q 006649 179 IEYASSVNEG 188 (637)
Q Consensus 179 ie~lssv~eg 188 (637)
.+++..+.++
T Consensus 162 ~~vL~~l~~~ 171 (230)
T 2oqr_A 162 FDLLEYLMRN 171 (230)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888877665
No 64
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.78 E-value=6.3e-19 Score=157.21 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=102.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPV 109 (637)
+++||||||++..++.++.+|+.. +.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 469999999999999999999987 99999999999999998876 9999999999999999999999754 68999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
|++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999998899999999999999999999999999999887643
No 65
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=1.3e-19 Score=160.99 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=109.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~g-y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPV 109 (637)
..++||||||++..++.++.+|+..+ |.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 45799999999999999999999999 99999999999999887655 9999999999999999999999754 58999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++|+..+.+...++++.||++||.||++.++|..+++++++.
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887643
No 66
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.78 E-value=2.2e-18 Score=153.99 Aligned_cols=119 Identities=30% Similarity=0.437 Sum_probs=106.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPV 109 (637)
.++||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 368999999999999999999998999999999999999998765 9999999999999999999999753 47899
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|++|+..+......++..|+++||.||++.++|..+++++++++
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999887666666677778999999999999999999887543
No 67
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.78 E-value=3.5e-18 Score=150.17 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=102.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC---CCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~---~IP 108 (637)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+... ..+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 4579999999999999999999999999999999999999998776 99999999999999999999998543 345
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
||+++...+. ...++++.||++||.||++.++|..+++++....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 5555555444 7889999999999999999999999999876554
No 68
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.78 E-value=1.4e-18 Score=170.32 Aligned_cols=154 Identities=25% Similarity=0.402 Sum_probs=126.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
.++||||||++..++.++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 369999999999999999999998999999999999999998876 999999999999999999999987678999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCc----------cccccCCCChhhHHHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL----------EETDHHKRGSDEIEYA 182 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~~~l----------e~~~~~kl~~~Eie~l 182 (637)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.............. .......++.+|.+++
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 162 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLL 162 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHHH
Confidence 999999899999999999999999999999999999876542211100000000 0111235788888888
Q ss_pred hhhccC
Q 006649 183 SSVNEG 188 (637)
Q Consensus 183 ssv~eg 188 (637)
..+.++
T Consensus 163 ~~l~~~ 168 (238)
T 2gwr_A 163 VALARK 168 (238)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 777666
No 69
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=3.5e-18 Score=170.86 Aligned_cols=121 Identities=31% Similarity=0.475 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
..+++||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+|||++++++|+. .+.+||
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 35689999999999999999999998999999999999999998866 999999999999999999999975 468999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|++|++.+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987654
No 70
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.78 E-value=3.5e-18 Score=154.86 Aligned_cols=121 Identities=25% Similarity=0.461 Sum_probs=111.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+++||||||++..++.++.+|++ ++.|..+.++.+|++.+++.. .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 357999999999999999999986 899999999999999998754 2599999999999999999999974 5789999
Q ss_pred EEeccCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~G-A~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
++|+..+.+...++++.| +++||.||++.++|..+++.++++..
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999987653
No 71
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.78 E-value=1.3e-18 Score=154.86 Aligned_cols=122 Identities=25% Similarity=0.398 Sum_probs=112.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~---~~~IP 108 (637)
.+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 4689999999999999999999999999999999999999998765 999999999999999999999975 46799
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
||++|+..+.+...++++.||++||.||++.++|..++++++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999998888888999999999999999999999999999876543
No 72
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.77 E-value=2.9e-18 Score=165.87 Aligned_cols=155 Identities=31% Similarity=0.426 Sum_probs=128.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
.++||||||++..++.++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999998999999999999999998765 999999999999999999999975 47899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcc--c-ccccccCCc----------cccccCCCChhh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE--N-KEHENSGSL----------EETDHHKRGSDE 178 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~--~-k~~~~~~~l----------e~~~~~kl~~~E 178 (637)
+|+..+.+...++++.||++||.||++.++|..++++++++.... . ......... .......++.+|
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 164 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKRE 164 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHHH
Confidence 999999888899999999999999999999999999998875431 1 100000000 011224578888
Q ss_pred HHHHhhhccCC
Q 006649 179 IEYASSVNEGT 189 (637)
Q Consensus 179 ie~lssv~eg~ 189 (637)
.+++..+.++.
T Consensus 165 ~~vL~~l~~g~ 175 (233)
T 1ys7_A 165 FDLLAVLAEHK 175 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 88888877763
No 73
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.77 E-value=6.3e-18 Score=153.37 Aligned_cols=121 Identities=24% Similarity=0.448 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+++||||||++..+..++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4579999999999999999999999999999999999999998765 999999999999999999999975 4689999
Q ss_pred EEeccCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~G-A~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
++|+..+.+...++++.| +++||.||++.++|..++++++++..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999887653
No 74
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.77 E-value=4.9e-18 Score=150.35 Aligned_cols=119 Identities=27% Similarity=0.442 Sum_probs=110.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-cCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGL-EMD 106 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MP-----dmDGlELLe~Ir~-~~~ 106 (637)
+++||||||++..++.++.+|...++.|..+.++.+|++.++... ||+||+|+.|| +++|+++++.|+. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999998999999999999999998876 99999999999 9999999999974 468
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|||++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999987654
No 75
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.77 E-value=3.7e-18 Score=152.24 Aligned_cols=120 Identities=24% Similarity=0.348 Sum_probs=110.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+ ||+++|+++++.++. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 3579999999999999999999999999999999999999998765 99999999 999999999999974 4679999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999887653
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.77 E-value=1.5e-18 Score=184.53 Aligned_cols=119 Identities=30% Similarity=0.431 Sum_probs=112.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
.+|||||||+.+++.++.+|+..+|.|..+.++.+|++.++... ||+||+|++||+|||++++++|+. .+.+|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 37999999999999999999999999999999999999999876 999999999999999999999974 478999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|++.+.+.+.+|++.||++||.||++.++|..++++++....
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 77
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.77 E-value=1.4e-18 Score=156.50 Aligned_cols=120 Identities=27% Similarity=0.371 Sum_probs=102.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRR--CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~--~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
+++||||||++..++.++.+|.+ .++.+. .+.++.++++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ 79 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLYPDCS 79 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Confidence 36899999999999999999974 477766 8999999999987655 999999999999999999999974 47899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
||++|+..+.+.+.++++.||.+||.||++.++|..+++++++...
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 80 VIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999988888999999999999999999999999999887653
No 78
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.77 E-value=3.5e-18 Score=151.63 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC----C
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM----D 106 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~----~ 106 (637)
.+++||||||++..++.++.+|...++.|..+.++.+|++.+... +|+||+|+.||+++|++++++|+. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999998899999999999999987532 499999999999999999999973 22 3
Q ss_pred C-cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 107 L-PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 107 I-PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
. +||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 3 578899999999999999999999999999999999999887643
No 79
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.77 E-value=2.7e-18 Score=147.68 Aligned_cols=113 Identities=25% Similarity=0.406 Sum_probs=103.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
++||||||++..++.++..|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999998999999999999999998765 999999999999999999999975 467999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
|+..+.. .++++.|+.+||.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987665 67889999999999999999999888753
No 80
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.77 E-value=5.3e-19 Score=172.39 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=129.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g-y~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPV 109 (637)
+++||||||++..++.++.+|...+ +.+ ..+.++.+|++.+.... ||+||+|+.||++||+++++.|+. .+.+||
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 78 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRC 78 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 3799999999999999999999876 874 57999999999998876 999999999999999999999975 578999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccccc--CCc-----cccccCCCChhhHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS--GSL-----EETDHHKRGSDEIEYA 182 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~~~--~~l-----e~~~~~kl~~~Eie~l 182 (637)
|++|+..+.+...++++.||++||.||++.++|..+++.++++........... ... .......++.+|.+++
T Consensus 79 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 158 (225)
T 3c3w_A 79 LILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLL 158 (225)
T ss_dssp EEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999988753321110000 000 0012345788888888
Q ss_pred hhhccCCcchhhh
Q 006649 183 SSVNEGTEGTFKA 195 (637)
Q Consensus 183 ssv~eg~~~~vk~ 195 (637)
..+.++......+
T Consensus 159 ~~l~~g~s~~eIa 171 (225)
T 3c3w_A 159 GLLSEGLTNKQIA 171 (225)
T ss_dssp HHHHTTCCHHHHH
T ss_pred HHHHCCCCHHHHH
Confidence 8887775444333
No 81
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.76 E-value=2.6e-18 Score=181.49 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
+++||||||++..++.|+.+|+..+|.|..+.++.+|++.++... |||||+|++||+|||++++++|+. .+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999999999999999999998866 999999999999999999999975 47899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPi-s~eEL~~~Lq~Vlrk~ 153 (637)
+|++.+.+.+.+|++.||++||.||+ +.++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999888887654
No 82
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.76 E-value=6.6e-19 Score=171.14 Aligned_cols=161 Identities=9% Similarity=0.000 Sum_probs=123.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTT-CSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~-~gy~V~~-asng~EALe-lLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~ 106 (637)
..++|||||||+..++.++.+|+. .++.|.. +.++.+++. .+.... ||+||+|+.||++||++++++|+. .++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 458999999999999999999984 5888753 455666555 355554 999999999999999999999976 578
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc---------ccCCccccccCCCChh
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---------NSGSLEETDHHKRGSD 177 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~~~---------~~~~le~~~~~kl~~~ 177 (637)
+|||++|++.+.+....+++.||++||.||++.++|..+++.++++......... ............++.+
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r 163 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKR 163 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCHH
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCHH
Confidence 9999999999998999999999999999999999999999999876432211100 0000011122357888
Q ss_pred hHHHHhhhccCCcchhh
Q 006649 178 EIEYASSVNEGTEGTFK 194 (637)
Q Consensus 178 Eie~lssv~eg~~~~vk 194 (637)
|.+++..+.+|......
T Consensus 164 E~~vL~~l~~g~s~~~I 180 (225)
T 3klo_A 164 EQQIIKLLGSGASNIEI 180 (225)
T ss_dssp HHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 88888888776544333
No 83
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.2e-17 Score=148.77 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=107.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC----CCceEEEEeCCCCCCCHHHHHHHHhcc--
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK----GCFDVVLSDVHMPDMDGFKLLEHIGLE-- 104 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre~~----~~pDLVIlDI~MPdmDGlELLe~Ir~~-- 104 (637)
.++||||||++..++.++.+|...++ .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.++..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 47899999999999999999998887 8999999999999998610 249999999999999999999999854
Q ss_pred -CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 105 -MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 105 -~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
+.+|||++|+..+.+...++++.|+++||.||++.++|..++.+...
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998776543
No 84
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.76 E-value=1.5e-17 Score=148.44 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=106.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
.+||||||++..+..++.+|... |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|+|++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 37999999999999999999875 89999999999999998765 999999999999999999999975 467899999
Q ss_pred eccCCHHHHHHHHHc-CCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~-GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+...+++.. ||++||.||++.++|..+++++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999988888899986 59999999999999999999887654
No 85
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.76 E-value=9.4e-18 Score=152.40 Aligned_cols=121 Identities=30% Similarity=0.497 Sum_probs=111.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVI 110 (637)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 3579999999999999999999999999999999999999887655 999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
++|+..+.+...++++.|+++||.||++.++|..+++++++++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887653
No 86
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.76 E-value=8e-18 Score=162.04 Aligned_cols=152 Identities=23% Similarity=0.291 Sum_probs=123.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVII 111 (637)
+++||||||++..++.++.+|...+ .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 4699999999999999999999888 899999999999877 3 39999999999999999999999754 7899999
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccc---c--cccCC--ccccccCCCChhhHHHHhh
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE---H--ENSGS--LEETDHHKRGSDEIEYASS 184 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~~~k~---~--~~~~~--le~~~~~kl~~~Eie~lss 184 (637)
+|+..+.+...++++.||++||.||++.++|..+++.++++....... . ..... ........++.+|.+++..
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~ 156 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLF 156 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCEEEecCHHHHHHHHH
Confidence 999999999999999999999999999999999999998775310000 0 00000 0011223578888888887
Q ss_pred hccCC
Q 006649 185 VNEGT 189 (637)
Q Consensus 185 v~eg~ 189 (637)
+.++.
T Consensus 157 l~~~~ 161 (220)
T 1p2f_A 157 LAENA 161 (220)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 77663
No 87
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.75 E-value=1e-17 Score=151.83 Aligned_cols=120 Identities=21% Similarity=0.352 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~-~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
.+++||||||++..++.++.+|.. .+|.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 357999999999999999999998 689887 8999999999998765 999999999999999999999975 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999887654
No 88
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.75 E-value=9.3e-18 Score=145.12 Aligned_cols=115 Identities=17% Similarity=0.340 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhcc---CCCcE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE---MDLPV 109 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MP-dmDGlELLe~Ir~~---~~IPV 109 (637)
++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.|| +++|+++++.++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999998999999999999999998876 99999999999 99999999999754 68999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|++ +..+.+...++++.|+.+||.||++.++|...++++++
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999 88888889999999999999999999999999988764
No 89
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.75 E-value=6e-18 Score=152.01 Aligned_cols=113 Identities=24% Similarity=0.342 Sum_probs=96.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~-gy~V-~~asng~EALelLre~-~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
+.+.+||||||++..+..++.+|+.. ++.+ ..+.++.+|++.+... . ||+||+|+.||+++|++++++|+.....
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPN--VDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTT--CCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 45679999999999999999999987 7875 4899999999999876 4 9999999999999999999999866668
Q ss_pred cEEEEec--cCCHHHHHHHHHcCCCeEEeCCCCHHHHHHH
Q 006649 108 PVIMMSA--DGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (637)
Q Consensus 108 PVIILSa--~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~ 145 (637)
|+|++++ ..+.+.+.++++.||++||.||++.++|...
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 9999987 6667778899999999999999996655444
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.74 E-value=1.5e-17 Score=177.57 Aligned_cols=118 Identities=29% Similarity=0.515 Sum_probs=111.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
|+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998765 999999999999999999999974 478999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|++.+.+.+.+|++.||+|||.||++.++|..+++++++.+
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654
No 91
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.74 E-value=1.7e-17 Score=177.88 Aligned_cols=118 Identities=32% Similarity=0.499 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPVI 110 (637)
.+||||||++..++.|+.+|...+|.|..+.++.+|++.++... |||||+|+.||+|||++++++|+.. +++|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999998999999999999999998876 9999999999999999999999753 578999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|++.+.+.+.+|++.||.+||.||++.++|...++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643
No 92
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.74 E-value=5.9e-17 Score=144.57 Aligned_cols=120 Identities=20% Similarity=0.370 Sum_probs=104.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~-gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IP 108 (637)
.+++||||||++..++.++.+|... ++. +..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +..+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3589999999999999999999875 777 458999999999998866 9999999999999999999999865 4566
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
||++|+..+ ...++++.||.+||.||++.++|..+++++++....
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 888888754 577899999999999999999999999998876643
No 93
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.73 E-value=1.5e-17 Score=150.59 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=99.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy-~V~~asng~EALelLre-~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
.++||||||++..+..++.+|... ++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 77 78899999999999987 55 999999999999999999999975 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
||++|+..+.+...++++.|+.+||.||++.++|..++++++++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 9999999998999999999999999999999999999999887653
No 94
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=5.6e-17 Score=143.99 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=107.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCc
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP 108 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~-~IP 108 (637)
...+++||||||++..++.++.+|...++.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ .+|
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCcc
Confidence 346689999999999999999999999999999999999999998765 99999 99999999999997557 899
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRK 152 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPi-s~eEL~~~Lq~Vlrk 152 (637)
||++|+..+.+...++++.||++||.||+ +.++|..++++++++
T Consensus 89 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999987654
No 95
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.73 E-value=3.6e-17 Score=151.37 Aligned_cols=118 Identities=27% Similarity=0.361 Sum_probs=100.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~g-y-~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
..++||||||++..++.++.+|...+ + .+..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+||
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~i 101 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTRV 101 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCEE
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCceE
Confidence 56899999999999999999999874 3 3558999999999998876 999999999999999999999986555999
Q ss_pred EEEeccCCHH--HHHHHHHcCCCeEEeCCCC---------HHHHHHHHHHHHH
Q 006649 110 IMMSADGRVS--AVMRGIRHGACDYLIKPIR---------EEELKNIWQHVVR 151 (637)
Q Consensus 110 IILSa~~d~e--~a~kAl~~GA~DYLlKPis---------~eEL~~~Lq~Vlr 151 (637)
|++|+..+.. .+.++++.||++||.||++ .++|..++++++.
T Consensus 102 i~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 102 IMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred EEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 9999977654 6779999999999999999 4566655555543
No 96
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.73 E-value=1.5e-17 Score=148.63 Aligned_cols=116 Identities=24% Similarity=0.442 Sum_probs=101.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc------cCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL------EMD 106 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~------~~~ 106 (637)
.++||||||++..+..++.+|+..++.+..+.++.+|++.++... ||+||+|+.||+++|++++++|++ .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 469999999999999999999988999999999999999998765 999999999999999999999974 267
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|||++|+..+..... +.|+++||.||++.++|..++++++++.
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 8999999876554332 7899999999999999999999887544
No 97
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.73 E-value=6.5e-17 Score=141.75 Aligned_cols=118 Identities=21% Similarity=0.363 Sum_probs=106.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPd-mDGlELLe~Ir~-~~~IPVI 110 (637)
+++||||||++..++.++..|...+|.|..+.++.+|++.++.. ..||+||+|+.||+ ++|++++++++. .+.+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 57999999999999999999999899999999999999999875 13999999999998 999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|+..+.+...+++..| +||.||++.++|..+++++++..
T Consensus 84 ~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 84 YISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 999999888888887776 79999999999999999987664
No 98
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.72 E-value=2.1e-17 Score=140.29 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=103.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IPV 109 (637)
+++||||||++..++.++.+|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 368999999999999999999999999999999999999998876 9999999999999999999999754 67999
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vl 150 (637)
|++|...+.+ ++++.|+.+||.||++.++|...+++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999988776 8999999999999999999998887653
No 99
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.72 E-value=2.4e-17 Score=170.34 Aligned_cols=117 Identities=27% Similarity=0.365 Sum_probs=107.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~-~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
..+||||||++..++.++.+|.+ .++.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+.. +.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 35799999999999999999974 5899999999999999998876 9999999999999999999999753 5799
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
||++|++.+.+++.+|++.||.+||.||++.++|..+++.+.+
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887754
No 100
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.72 E-value=9e-18 Score=147.44 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=105.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVII 111 (637)
+++||||||++..++.++.+|+..++.|..+.+++++++.+.. . ||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999987653 3 999999999999999999999974 46799999
Q ss_pred EeccCCH-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 112 MSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 112 LSa~~d~-----e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|+..+. +...++++.|+++||.||++.++|..+++++..+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9998875 67778999999999999999999999999876543
No 101
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.4e-17 Score=157.18 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=120.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~-~IPVIIL 112 (637)
|+||||||++..++.++.+|...++.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 58999999999999999999998999999999999999998655 99999 99999999999997556 8999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh--hcccc-cc--cccCC-c-cccccCCCChhhHHHHhh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR--WNENK-EH--ENSGS-L-EETDHHKRGSDEIEYASS 184 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPi-s~eEL~~~Lq~Vlrk~--~~~~k-~~--~~~~~-l-e~~~~~kl~~~Eie~lss 184 (637)
|++.+.+.+.++++.||++||.||+ +.++|..++++++++. ..... .. ..... . .......++.+|.+++..
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~ 154 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHHH
Confidence 9999999999999999999999999 9999999999988664 11100 00 00000 0 011123467788888877
Q ss_pred hccC
Q 006649 185 VNEG 188 (637)
Q Consensus 185 v~eg 188 (637)
+.++
T Consensus 155 l~~~ 158 (223)
T 2hqr_A 155 LARH 158 (223)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7666
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.70 E-value=2.7e-17 Score=146.21 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=101.8
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhc-c
Q 006649 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-E 104 (637)
Q Consensus 27 ~~~fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre-~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~ 104 (637)
+...+.+++||||||++..++.++.+|+..+|.|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .
T Consensus 9 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 9 HHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp -----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 3445678999999999999999999999989999999999999999887 65 999999999999999999999975 3
Q ss_pred CCCcEEEEe-ccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 105 MDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 105 ~~IPVIILS-a~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
+.+|||++| +..+.+. .+++ +++||.||++.++|..+++++++
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 679999999 8877766 6666 99999999999999999987654
No 103
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.70 E-value=5.8e-17 Score=172.60 Aligned_cols=120 Identities=22% Similarity=0.300 Sum_probs=106.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~-~gy~V~~asng~EALelLre~-~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPV 109 (637)
.++|||||||+..++.++.+|+. .++.|..+.++.+|++.++.. . |||||+|++||+|||++++++++.. +..+|
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~--~DlvllDi~mP~~dG~ell~~l~~~~~~~~i 80 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGH--VDIAICDLQMSGMDGLAFLRHASLSGKVHSV 80 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSC--EEEEEECSSCSSSCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCceE
Confidence 47999999999999999999998 578999999999999999873 5 9999999999999999999999754 44567
Q ss_pred EEEeccCCH-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006649 110 IMMSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (637)
Q Consensus 110 IILSa~~d~-----e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~ 154 (637)
|++|++++. ..+.+|++.||.+||.||++.++|..+++++++...
T Consensus 81 i~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 81 ILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 777777766 677889999999999999999999999999887643
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.69 E-value=3.2e-17 Score=155.41 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=103.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~-~~IPVI 110 (637)
.+++||||||++..+..++.+|...+|.|..+.++.+++ . ..||+||+|+.||++||+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998899998888877766 2 249999999999999999 88888766 889999
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
++|++.+.+.+.++++.||.+||.||++.++|..+++.+++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 105
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.67 E-value=1.7e-18 Score=149.49 Aligned_cols=118 Identities=35% Similarity=0.477 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIIL 112 (637)
.+||||||++..+..++.+|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCC--CSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 57999999999999999999988899999999999999887654 999999999999999999999974 468999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
|+..+.+...++++.||.+|+.||++.++|...+++++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99988888889999999999999999999999999987653
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.63 E-value=2.2e-15 Score=159.34 Aligned_cols=118 Identities=30% Similarity=0.442 Sum_probs=104.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~-gy~-V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.+|||||||++..++.++.+|+.. ++. |..+.++.+|++.++... ||+||+|+.||++||++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 569999999999998876 9999999999999999999999865559999
Q ss_pred EEeccCCH--HHHHHHHHcCCCeEEeCCCCH---------HHHHHHHHHHHHH
Q 006649 111 MMSADGRV--SAVMRGIRHGACDYLIKPIRE---------EELKNIWQHVVRK 152 (637)
Q Consensus 111 ILSa~~d~--e~a~kAl~~GA~DYLlKPis~---------eEL~~~Lq~Vlrk 152 (637)
++|+..+. +...++++.||.|||.||++. ++|...++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99998775 458899999999999999983 7777777776554
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.60 E-value=1.1e-15 Score=153.63 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=86.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~-gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIIL 112 (637)
.|||||||++.+++.|...|... ++.+.. .++.+++..+... .||+||+|++||++||++++++++. ..+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEEE
Confidence 58999999999999999999754 777754 4555565555443 4999999999999999999999986 36999999
Q ss_pred eccCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006649 113 SADGRVSAVMRGIRHGACDYLIKPIREE 140 (637)
Q Consensus 113 Sa~~d~e~a~kAl~~GA~DYLlKPis~e 140 (637)
|++.+.+...+|++.||+|||.||+...
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 9999999999999999999999997543
No 108
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.56 E-value=2.9e-15 Score=122.49 Aligned_cols=62 Identities=65% Similarity=1.082 Sum_probs=59.5
Q ss_pred CCCCccchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 217 ~sKKpRvvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
..+|+|+.|+.|+|..|+++|+++|.++|.||+|+++|+++|||+++|+||+ |+||..+||.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL-----QKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL-----QKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH-----HHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH-----HHHHHHHHcc
Confidence 4578999999999999999999999999999999999999999999999999 9999999985
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.53 E-value=7.4e-15 Score=169.52 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=107.9
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 006649 34 LRVLVVDDDI-TC-------LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHI 101 (637)
Q Consensus 34 irVLIVDDD~-~~-------re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPd----mDGlELLe~I 101 (637)
|||||||||+ .. ++.|+..|+..+|+|..+.++++|+..++... .||+||+|++||+ +||++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5899999999 88 99999999999999999999999999998642 3999999999999 9999999999
Q ss_pred hcc-CCCcEEEEeccCC-HHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHHHh
Q 006649 102 GLE-MDLPVIMMSADGR-VSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVRKR 153 (637)
Q Consensus 102 r~~-~~IPVIILSa~~d-~e~a~kAl~~GA~DYLlKPis~eE-L~~~Lq~Vlrk~ 153 (637)
|+. .++|||++|+.++ .+....++..||+||+.||++..| |...++.++++.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 854 5899999999887 777888999999999999999999 888888888764
No 110
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=98.99 E-value=1.2e-10 Score=102.37 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=57.7
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+|+.++|.+|.+|++++||++|+ +||..+++++.+||..+||.|..+|++.||+++|+||.
T Consensus 41 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 101 (108)
T 3oou_A 41 LFQKEMGEHFTDYLNRYRVNYAK-----EELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPN 101 (108)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHhCcCHH
Confidence 79999999999999999999995 67778999999999999999999999999999999984
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.98 E-value=1.1e-08 Score=109.65 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=99.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~---~~IP 108 (637)
.+.+|++|||+...+..+...|.. .+.+....+..+++. .... .||+|++|+.||+|||+++++.++.. ..+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 346899999999988888888866 466777888888763 3333 39999999999999999999999743 5789
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
||++|+..+.+...++++.|+.||+.||+..+++...+..+++.+
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887766544
No 112
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.98 E-value=3.7e-10 Score=108.72 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=77.1
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 58 y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
+.|..+.++.+|++.++... |||||+|+.||+++|++++++|+. .+..++++++.....+.+.++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 45556889999999998876 999999999999999999999974 345667777777778889999999999999999
Q ss_pred --CCHHHHHHHHHHHHH
Q 006649 137 --IREEELKNIWQHVVR 151 (637)
Q Consensus 137 --is~eEL~~~Lq~Vlr 151 (637)
++.+++...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788777766553
No 113
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=98.97 E-value=1.5e-10 Score=101.50 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.++|.+|.+|++++||++|. +||..+++++.+||..+||.|..+|.+.||+++|+||.
T Consensus 40 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (107)
T 2k9s_A 40 LFRQQLGISVLSWREDQRISQAK-----LLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPS 100 (107)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 67777999999999999999999999999999999984
No 114
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=98.97 E-value=1.4e-10 Score=102.74 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=57.9
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+|+.++|.+|.+|++++||++|+ +||..+++++.|||..+||.|..+|.+.||+++|+||.
T Consensus 43 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 103 (113)
T 3oio_A 43 LFKQYLGTVPSKYYLELRLNRAR-----QLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFNITPR 103 (113)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 67778999999999999999999999999999999985
No 115
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=98.95 E-value=2e-10 Score=99.89 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=57.6
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.++|.+|.+|++++||++|. ++|..+++++.+||..+||.|..+|.+.||+++|+||.
T Consensus 39 ~fk~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP~ 99 (103)
T 3lsg_A 39 MFKKNFGIPFQDYLLQKRMEKAK-----LLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPK 99 (103)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 66777999999999999999999999999999999984
No 116
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.94 E-value=2.5e-10 Score=100.10 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=57.0
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCC--CCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPG--LTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~g--Lti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.++|.+|.+|++++||++|+ +||..++ +++.+||..+||.|..+|++.||+++|+||.
T Consensus 38 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (108)
T 3mn2_A 38 AFQRSRGYSPMAFAKRVRLQHAH-----NLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPS 100 (108)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHH-----HHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcChH
Confidence 79999999999999999999995 6777776 7999999999999999999999999999984
No 117
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=98.92 E-value=3e-10 Score=103.09 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=58.0
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|++++|.+|.+|++++||++|+ +||..+++++.+||..+||.|..+|++.|||++|+||.
T Consensus 47 ~fk~~~G~s~~~~l~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 107 (129)
T 1bl0_A 47 MFKKETGHSLGQYIRSRKMTEIA-----QKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPH 107 (129)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 67777999999999999999999999999999999995
No 118
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=98.88 E-value=5.3e-10 Score=100.05 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=56.6
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.|+.. |.+|.+|++++||++|+ +||..+++++.+||..+||.|..+|++.||+++|+||.
T Consensus 43 ~fk~~-G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 43 KLREE-ETSYSQLLTECRMQRAL-----QLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHT-TCCHHHHHHHHHHHHHH-----HHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 68886 99999999999999995 77888999999999999999999999999999999995
No 119
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=98.71 E-value=2.7e-09 Score=107.03 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=56.1
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
.||. +|.+|.+||+++||++|+ +||..+++++.|||..|||.|..||++.|||++|+||.
T Consensus 205 ~fk~-~G~t~~~~l~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fkk~~G~tP~ 264 (276)
T 3gbg_A 205 ELES-RGVKFRELINSIRISYSI-----SLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPS 264 (276)
T ss_dssp HHHT-TTCCHHHHHHHHHHHHHH-----HHHHHTCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHHhCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 6875 999999999999999995 67778999999999999999999999999999999995
No 120
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=98.56 E-value=1.5e-08 Score=102.16 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=58.1
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 223 vvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..|+.++|.+|.+|++++||++|+ +||..+++++.+||..+||.|..+|++.|||++|+||.
T Consensus 38 r~f~~~~g~s~~~~~~~~Rl~~a~-----~~L~~~~~~i~~ia~~~Gf~~~~~f~r~fk~~~g~~P~ 99 (292)
T 1d5y_A 38 RMFKDVTGHAIGAYIRARRLSKSA-----VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 99 (292)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcChH
Confidence 379999999999999999999995 66777999999999999999999999999999999985
No 121
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=98.52 E-value=2.2e-08 Score=106.14 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=58.1
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 223 vvwk~Elg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..|++++|.+|.+|++++|+++|+ +||..+++++.+||..+||.|..+|.+.|||++|+||.
T Consensus 340 r~f~~~~g~s~~~~~~~~r~~~a~-----~~L~~~~~~i~~ia~~~Gf~~~~~f~~~Fk~~~g~tP~ 401 (412)
T 4fe7_A 340 KRFKEEVGETIHAMIHAEKLEKAR-----SLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPK 401 (412)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHSSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 66777999999999999999999999999999999984
No 122
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.13 E-value=0.0007 Score=67.13 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=71.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 31 p~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
..+.+||||||++..++.|..+|..+|+.|..+.+ .....+|++|+|..||...+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 46789999999999999999999999999988764 112359999999999886431 1255
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.++...... ....+...++.||+...++...+.+++.
T Consensus 69 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 555532210 1123456799999999888888777653
No 123
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=97.02 E-value=0.0004 Score=62.73 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=43.7
Q ss_pred HHHHHHhcccccchHHHHHHhc-CCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 234 VSAVNQLGIDKAVPKRILELMN-VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 234 veyLnqLRIeKA~PKkILeLL~-v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+....++++|. ++|. .+++++++||.++||+ ..||++.||+.+|+|+.
T Consensus 73 ~~~~~~~~l~~a~-----~~i~~~~~~sl~~lA~~~g~S-~~~f~r~Fk~~~G~tp~ 123 (133)
T 1u8b_A 73 PRQHRLDKITHAC-----RLLEQETPVTLEALADQVAMS-PFHLHRLFKATTGMTPK 123 (133)
T ss_dssp HHHHHHHHHHHHH-----HHTCSSSCCCHHHHHHHHTSC-HHHHHHHHHHHTSSCHH
T ss_pred cccchHHHHHHHH-----HHHHhcCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHH
Confidence 4677778888774 7777 7899999999999997 99999999999999974
No 124
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.46 E-value=0.0031 Score=72.78 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEeccCCHHHHHH
Q 006649 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 45 ~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir-~~~~IPVIILSa~~d~e~a~k 123 (637)
..+.|...|+..+|+|..+.+.++|+..++++. .++.||+|++|+ +.+++++|| ...++||++++...+.+.+.-
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 345566778888999999999999999998763 599999999886 688999997 457999999988754332211
Q ss_pred HHHcCCCeEEeCCCC-HHHHHHHHHHHHHH
Q 006649 124 GIRHGACDYLIKPIR-EEELKNIWQHVVRK 152 (637)
Q Consensus 124 Al~~GA~DYLlKPis-~eEL~~~Lq~Vlrk 152 (637)
....++.+|+.+..+ .+.+...+.++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123578899998874 45555555554443
No 125
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.83 E-value=0.043 Score=52.06 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC-CCCCCCHH--HHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE------eC
Q 006649 65 QAAVALDILRERKGCFDVVLSDV-HMPDMDGF--KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IK 135 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI-~MPdmDGl--ELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL------lK 135 (637)
+..+.++.+.... ..+++++++ .++.++|+ +++++++...++|||.+++..+.+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666665543 367999997 66767774 56777766678999999999999999999999999985 78
Q ss_pred CCCHHHHHHHHH
Q 006649 136 PIREEELKNIWQ 147 (637)
Q Consensus 136 Pis~eEL~~~Lq 147 (637)
|++..++++.++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999877544
No 126
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.13 E-value=0.059 Score=47.91 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=78.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCC-CCCCHHHHHHHHhc---cCCCcE
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGL---EMDLPV 109 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~M-PdmDGlELLe~Ir~---~~~IPV 109 (637)
-.||+|-.|-..--.+++++....|.+++...... .-.-|+|+|+..+ |. .+.. ....-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR--------EIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH--------HhcCCCCCCcccE
Confidence 35888988888888999999777898877643211 1237999999854 43 1321 123457
Q ss_pred EEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
|++-..-+.+...+.+..||. ||+.|+++.-|..+|+..++.
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 888888888999999999999 999999999999999988875
No 127
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=93.69 E-value=1.3 Score=41.51 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=81.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006649 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (637)
Q Consensus 32 ~girVLIV----DDD~~~re~Lk~lL~~~gy~V~~---asng~EALelLre~~~~pDLVIlDI~MPd-mD-GlELLe~Ir 102 (637)
...||++. |-+..=...+..+|+..||+|.. ....++.++.+++.. ||+|.+-..+.. +. --++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 45688888 88888889999999999999974 346788888888776 999999887653 22 233555565
Q ss_pred cc--CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 103 LE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 103 ~~--~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+. .+++|++ .+..-.+....+.+.|++.++..--+.++....++.++.++
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 3566554 45444444445668999876655456666666666666554
No 128
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=91.59 E-value=0.12 Score=44.48 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=29.3
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++.+||.++|++ ..||.+.||+.+|+|++
T Consensus 17 ~~~~~~~lA~~~~~s-~~~l~r~fk~~~G~s~~ 48 (108)
T 3mn2_A 17 RPITIEKLTALTGIS-SRGIFKAFQRSRGYSPM 48 (108)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHTSSCHH
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHhCcCHH
Confidence 459999999999986 89999999999999986
No 129
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=91.52 E-value=0.11 Score=44.73 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=31.5
Q ss_pred HHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 252 ELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 252 eLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
+.+....+++.++|.++|. +..+|.+.||+.+|+|+.
T Consensus 14 ~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~ 50 (107)
T 2k9s_A 14 DHLADSNFDIASVAQHVCL-SPSRLSHLFRQQLGISVL 50 (107)
T ss_dssp HTSSCSSCCHHHHHHHTTS-CHHHHHHHHHHHHSSCHH
T ss_pred HHhccCCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHH
Confidence 3344478999999999997 578999999999999986
No 130
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=89.57 E-value=0.16 Score=44.10 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=28.9
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++.+||.++|+ +..||.+.||+.+|+|++
T Consensus 22 ~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~ 53 (113)
T 3oio_A 22 EPLSTDDIAYYVGV-SRRQLERLFKQYLGTVPS 53 (113)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHTSSCHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHH
Confidence 45999999999998 578999999999999986
No 131
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.01 E-value=1.8 Score=42.86 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=67.5
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006649 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (637)
Q Consensus 33 girVLIVDD----D~~~re~Lk~lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI~------MPdmDGlELLe~I 101 (637)
|..++++|- ++.....+.+.+...+..+ ..+.+.+++..+.+. .+|+|.+..+ .+...++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 445555543 2333333444445546554 467888888777653 3898865322 2234568999999
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 102 r~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
+.. ++|||.-.+-.+.+.+.++++.||+..+.=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 765 899999988889999999999999998763
No 132
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=88.98 E-value=0.4 Score=40.77 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=33.2
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
|.+.+..+.+++.+||.++|.+ ..+|.+.||+.+|+|++
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S-~~~l~r~fk~~~g~s~~ 49 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLS-SGYLSIMFKKNFGIPFQ 49 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCC-HHHHHHHHHHHHSSCHH
T ss_pred HHHHccCCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHH
Confidence 3455566799999999999975 58999999999999986
No 133
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.53 E-value=3.3 Score=43.23 Aligned_cols=106 Identities=12% Similarity=0.123 Sum_probs=76.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~---gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
..+|++|+|.|+...+.|..++... .+.+..+++.+.+.+.+++.. +|++|+|-.+.... ..+ ....+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-----~~~--~~~~~ 90 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-----SEF--KRNCG 90 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-----GGG--CSSCE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-----hhh--cccCc
Confidence 4589999999999999999999753 588999999999999998876 99999998775521 111 12355
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+++++.....+ ...-...+.|--+.+++.+.+..++..
T Consensus 91 v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~~e 128 (373)
T 3fkq_A 91 LAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVYSD 128 (373)
T ss_dssp EEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHHhh
Confidence 66666543221 011224788988998887777666543
No 134
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=87.73 E-value=0.5 Score=40.58 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++++||.++|. +..+|.+.||+.+|+|+.
T Consensus 20 ~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~ 51 (108)
T 3oou_A 20 EGMSLKTLGNDFHI-NAVYLGQLFQKEMGEHFT 51 (108)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHSSCHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHH
Confidence 47999999999997 578999999999999986
No 135
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=87.13 E-value=3.4 Score=42.24 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=74.5
Q ss_pred ccEEEEEe-------CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHH
Q 006649 33 GLRVLVVD-------DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (637)
Q Consensus 33 girVLIVD-------DD~~~re~Lk~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIlDI~MP-----dmDGlELL 98 (637)
.+|+=|+- |.....+.. +.|.+.|+.|. +..+...|..+ .+.. +++| +.+-.| +..-++++
T Consensus 105 ~iKlEv~~d~~~llpD~~~tv~aa-~~L~~~Gf~Vlpy~~dd~~~akrl-~~~G--~~aV-mPlg~pIGsG~Gi~~~~lI 179 (265)
T 1wv2_A 105 LVKLEVLADQKTLFPNVVETLKAA-EQLVKDGFDVMVYTSDDPIIARQL-AEIG--CIAV-MPLAGLIGSGLGICNPYNL 179 (265)
T ss_dssp EEEECCBSCTTTCCBCHHHHHHHH-HHHHTTTCEEEEEECSCHHHHHHH-HHSC--CSEE-EECSSSTTCCCCCSCHHHH
T ss_pred eEEEEeecCccccCcCHHHHHHHH-HHHHHCCCEEEEEeCCCHHHHHHH-HHhC--CCEE-EeCCccCCCCCCcCCHHHH
Confidence 46666663 333333333 34445688876 44455555444 4443 7877 554443 12237899
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006649 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (637)
Q Consensus 99 e~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~Lq~Vlr 151 (637)
+.|++..++|||.=.+-.+.+.+.+|+++||+..++ |--++.++...+..+++
T Consensus 180 ~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 180 RIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 999877899999877889999999999999999764 44456666666655543
No 136
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=86.09 E-value=3.3 Score=41.07 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=66.0
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006649 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (637)
Q Consensus 33 girVLIVDD----D~~~re~Lk~lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI~------MPdmDGlELLe~I 101 (637)
|..++++|- ++.....+.+.+...+..+ ..+.+.+++..+.+. ..|+|.+..+ .+...++++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 445555542 2333333444445545554 467788888776653 3898864322 1233468999998
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 102 r~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+.. ++|||.-.+-.+.+.+.++++.||+..+.
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 765 89999988888999999999999999875
No 137
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=82.70 E-value=0.67 Score=41.18 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=28.8
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++.+||.++|. +..+|.+.||+.+|+|++
T Consensus 26 ~~~sl~~lA~~~~~-S~~~l~r~fk~~~G~s~~ 57 (129)
T 1bl0_A 26 SPLSLEKVSERSGY-SKWHLQRMFKKETGHSLG 57 (129)
T ss_dssp SCCCCHHHHHHSSS-CHHHHHHHHHHHHSSCHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHH
Confidence 34999999999998 578999999999999986
No 138
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=82.13 E-value=28 Score=31.28 Aligned_cols=106 Identities=13% Similarity=0.019 Sum_probs=70.1
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc-C-CCcEEEE
Q 006649 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-M-DLPVIMM 112 (637)
Q Consensus 40 DDD~~~re~Lk~lL~~~gy~V~---~asng~EALelLre~~~~pDLVIlDI~MPd-mD-GlELLe~Ir~~-~-~IPVIIL 112 (637)
|-|..=...+..+|+..||+|. .....++.++.+++.. +|+|.+-..|.. +. --++++.+++. . +++|+ +
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~-v 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY-V 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEE-E
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEE-E
Confidence 4555666778888999999987 4567889999998876 999999887743 11 22345556542 2 56654 4
Q ss_pred ecc-----CCHHH-HHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006649 113 SAD-----GRVSA-VMRGIRHGACDYLIKPIREEELKNIWQH 148 (637)
Q Consensus 113 Sa~-----~d~e~-a~kAl~~GA~DYLlKPis~eEL~~~Lq~ 148 (637)
.+. .++.. ...+.+.|++.|+.---+..++...+.+
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 443 23332 4457789998888665666666555443
No 139
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=80.47 E-value=15 Score=32.15 Aligned_cols=112 Identities=15% Similarity=0.240 Sum_probs=62.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH-Hh---cc-CCCcE
Q 006649 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IG---LE-MDLPV 109 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~-Ir---~~-~~IPV 109 (637)
-|++..-|...+..++.++...||.|.++.+..+.-+.+++.-..+..-|.-+-..+ -|..++ || .. ..+-|
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvdd---kewaekairfvkslgaqvli 80 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDD---KEWAEKAIRFVKSLGAQVLI 80 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSS---HHHHHHHHHHHHHHCCCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEcc---HHHHHHHHHHHHhcCCeEEE
Confidence 344446777788889999999999999999999888877765434443222222222 232222 22 11 22323
Q ss_pred EEEeccCC---HHHHHHHHHcCCCeEEeCC-CCHHHHHHHHHHHHHHh
Q 006649 110 IMMSADGR---VSAVMRGIRHGACDYLIKP-IREEELKNIWQHVVRKR 153 (637)
Q Consensus 110 IILSa~~d---~e~a~kAl~~GA~DYLlKP-is~eEL~~~Lq~Vlrk~ 153 (637)
| +...+. .+..++.-+.| |-... -++++++..++++++..
T Consensus 81 i-iydqdqnrleefsrevrrrg---fevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 81 I-IYDQDQNRLEEFSREVRRRG---FEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp E-EECSCHHHHHHHHHHHHHTT---CCEEEESSHHHHHHHHHHHHHHH
T ss_pred E-EEeCchhHHHHHHHHHHhcC---ceEEEecChHHHHHHHHHHHHHh
Confidence 3 322221 11122222333 32332 36788888888887764
No 140
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=80.22 E-value=19 Score=35.99 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=69.5
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHh
Q 006649 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIG 102 (637)
Q Consensus 32 ~girVLIV----DDD~~~re~Lk~lL~~~gy~V~~---asng~EALelLre~~~~pDLVIlDI~MPd-mDG-lELLe~Ir 102 (637)
.+-+||++ |-|..=...+..+|+..||+|.. --..++.++.+++.. ||+|.+-..|.. +.. -++++.++
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHH
Confidence 34578888 67778888999999999999863 346677778888776 999999887754 443 34667776
Q ss_pred cc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 103 LE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 103 ~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
+. .++||++--...+.+++ -+.||+.|-.-.
T Consensus 200 ~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da 231 (258)
T 2i2x_B 200 ENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA 231 (258)
T ss_dssp TTTCCCCEEEESTTCCHHHH---HTSTTEEECSST
T ss_pred hcCCCCcEEEECccCCHHHH---HHcCCeEEECCH
Confidence 43 56776665444454443 378987776544
No 141
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=76.52 E-value=12 Score=35.93 Aligned_cols=98 Identities=13% Similarity=0.056 Sum_probs=68.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhc
Q 006649 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGL 103 (637)
Q Consensus 33 girVLIV----DDD~~~re~Lk~lL~~~gy~V~~as---ng~EALelLre~~~~pDLVIlDI~MPd-mDG-lELLe~Ir~ 103 (637)
+-+|+++ |-|..-...+..+|+..||+|.... ..++.++.+++.. ||+|.+-..|.. +.. -++++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 4578888 7778888899999999999997543 4677778887776 999999887654 332 345566654
Q ss_pred c---CCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 104 ~---~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
. +++||++--...+.+.+ -+.||+.|-.-
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~d 197 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPD 197 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECC
Confidence 3 34776665444454443 45698877553
No 142
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=75.39 E-value=6.4 Score=38.41 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=39.7
Q ss_pred HHHHHHHHhccCCCcEEEEeccCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa~~d------~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~ 148 (637)
++++++++++..++||++++..+. .+.+..+++.||+..++-....++....++.
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~ 128 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEI 128 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHH
Confidence 377888888766789988874333 5778899999999998866666555444433
No 143
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=75.05 E-value=1 Score=44.68 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=29.9
Q ss_pred CCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 256 v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
...+++.++|.++|++ ..+|+++||+.+|+|+.
T Consensus 17 ~~~~~~~~la~~~~~s-~~~l~r~f~~~~g~s~~ 49 (292)
T 1d5y_A 17 DQPLSLDNVAAKAGYS-KWHLQRMFKDVTGHAIG 49 (292)
T ss_dssp SSSCCCHHHHTTTSSC-HHHHHHHHHHHHSSCHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHH
Confidence 4689999999999975 78999999999999985
No 144
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=74.22 E-value=21 Score=33.50 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=49.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPd-------mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
.+.+..++..... .. +|.|+++-..|. ..+++.+++++...++||++..+-. .+.+.++++.||+.+.
T Consensus 114 ~~~t~~e~~~~~~-~g--~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 114 SVYSLEEALEAEK-KG--ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EESSHHHHHHHHH-HT--CSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred ecCCHHHHHHHHh-cC--CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 4677777765543 33 899998754442 3478888888755688988876655 7778888899998874
No 145
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=73.18 E-value=11 Score=38.64 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC-----HHHHHHHHhc-cCC-CcEEEEe
Q 006649 43 ITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMD-----GFKLLEHIGL-EMD-LPVIMMS 113 (637)
Q Consensus 43 ~~~re~Lk~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIlDI~MPdmD-----GlELLe~Ir~-~~~-IPVIILS 113 (637)
....+..+.+. +.||.|. +..+...|-. +.+.. +++| +++-.|-.. -.++++.+++ ..+ +|||+=.
T Consensus 111 ~~tv~aa~~L~-k~Gf~Vlpy~~~D~~~ak~-l~~~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~G 185 (268)
T 2htm_A 111 LETLKAAERLI-EEDFLVLPYMGPDLVLAKR-LAALG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDA 185 (268)
T ss_dssp HHHHHHHHHHH-HTTCEECCEECSCHHHHHH-HHHHT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEES
T ss_pred HHHHHHHHHHH-HCCCEEeeccCCCHHHHHH-HHhcC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeC
Confidence 33344444444 4488765 3345544444 44433 7776 555443222 2567888876 677 9999988
Q ss_pred ccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~Lq~Vlr 151 (637)
+-.+.+.+..++++||+..++ |--++..+...+..++.
T Consensus 186 GI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 186 GLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp CCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 889999999999999999764 54456666666665543
No 146
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=72.35 E-value=2.8 Score=36.50 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=27.3
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..+++.+||.++|++. .||.+.||+. |+|++
T Consensus 22 ~~~~~~~lA~~~~~S~-~~l~r~fk~~-G~s~~ 52 (120)
T 3mkl_A 22 HEWTLARIASELLMSP-SLLKKKLREE-ETSYS 52 (120)
T ss_dssp SCCCHHHHHHHTTCCH-HHHHHHHHHT-TCCHH
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHHc-CCCHH
Confidence 4789999999999765 7999999997 99985
No 147
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=71.77 E-value=11 Score=37.83 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=40.2
Q ss_pred HHHHHHHHhccC-CCcEEEEeccCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEM-DLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 94 GlELLe~Ir~~~-~IPVIILSa~~d------~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
.+++++++|... ++|+++++-++. ...+..+.+.|+++++.-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 346677777655 899999853321 35567789999999999878888876655544
No 148
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.40 E-value=17 Score=35.49 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=67.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEE--eCCCC-CCCH-HHHHHHH
Q 006649 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLS--DVHMP-DMDG-FKLLEHI 101 (637)
Q Consensus 33 girVLIV----DDD~~~re~Lk~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIl--DI~MP-dmDG-lELLe~I 101 (637)
.-||++. |-|..=...+..+|+..||+|... -..++.++.+++.. ||+|.+ -..|. .++. -++++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4578877 677788888999999999998754 35678888888876 999999 77664 2332 3456666
Q ss_pred hcc-C--CCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 102 GLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 102 r~~-~--~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
++. . ++||++=-+.-..+++ -+.||+.|-..
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~d 203 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAEN 203 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSS
T ss_pred HHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECC
Confidence 543 2 5776655444455443 35699888553
No 149
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=71.39 E-value=44 Score=33.80 Aligned_cols=87 Identities=13% Similarity=0.002 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeC---CCCCCCHHHHHHHHhcc-C-CCcEEEEeccCCH
Q 006649 45 CLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIGLE-M-DLPVIMMSADGRV 118 (637)
Q Consensus 45 ~re~Lk~lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI---~MPdmDGlELLe~Ir~~-~-~IPVIILSa~~d~ 118 (637)
....+.......|..+ ..+.+.+++...+.. . .|+|-+.- ..... +++.++++... + ++|+|..++-.+.
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~-G--ad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~t~ 225 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALKA-G--AKVIGVNARDLMTLDV-DRDCFARIAPGLPSSVIRIAESGVRGT 225 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T--CSEEEEESBCTTTCCB-CTTHHHHHGGGSCTTSEEEEESCCCSH
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC-C--CCEEEECCCccccccc-CHHHHHHHHHhCcccCEEEEECCCCCH
Confidence 3444445555567654 467888887666643 3 78887752 22222 35666677543 3 6899999988889
Q ss_pred HHHHHHHHcCCCeEEeC
Q 006649 119 SAVMRGIRHGACDYLIK 135 (637)
Q Consensus 119 e~a~kAl~~GA~DYLlK 135 (637)
+.+.+..+.||+++++=
T Consensus 226 edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 226 ADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999863
No 150
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=71.21 E-value=36 Score=32.48 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=50.0
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPd-------mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
..+.+.+++.+.... ..|.|+++-..+. .-|++.++.++...++|||...+- +.+.+.++++.||+...
T Consensus 115 ~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~ 190 (221)
T 1yad_A 115 RSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIA 190 (221)
T ss_dssp EEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEE
T ss_pred EEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 366788887766543 3799999764332 236788888865558998887776 78889999999998764
Q ss_pred e
Q 006649 134 I 134 (637)
Q Consensus 134 l 134 (637)
.
T Consensus 191 v 191 (221)
T 1yad_A 191 V 191 (221)
T ss_dssp E
T ss_pred E
Confidence 3
No 151
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=71.09 E-value=32 Score=36.41 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006649 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (637)
Q Consensus 32 ~girVLIVD----DD~~~re~Lk~lL~~~-gy~V--~~asng~EALelLre~~~~pDLVIlDI~MPd------------m 92 (637)
.+..++++| +.+...+.++++-+.. +..| ..+.+.++|..+.+.. .|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCccc
Confidence 456677775 3455666666666554 4444 3588899998877653 798888321 21 2
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 93 DGlELLe~Ir---~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..++++..+. ...++|||.--+-.+...+.+++.+||+....
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3455555553 24579999888888889999999999987654
No 152
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=70.56 E-value=9.1 Score=38.37 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=50.3
Q ss_pred CceEEEEeCCC--CCCC--------------------HHHHHHHHhcc-CCCcEEEEeccC------CHHHHHHHHHcCC
Q 006649 79 CFDVVLSDVHM--PDMD--------------------GFKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGA 129 (637)
Q Consensus 79 ~pDLVIlDI~M--PdmD--------------------GlELLe~Ir~~-~~IPVIILSa~~------d~e~a~kAl~~GA 129 (637)
..|+|-+|+-. |.+| ++++++.+|+. .++||++|+-+. -...+.++.+.|+
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 38999988833 2234 34667777766 689998875222 2467888999999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 006649 130 CDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 130 ~DYLlKPis~eEL~~~Lq~V 149 (637)
+.++.-....+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999888877766655544
No 153
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=69.10 E-value=25 Score=37.74 Aligned_cols=99 Identities=14% Similarity=0.271 Sum_probs=65.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCC-------C----CCCCHH
Q 006649 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-------M----PDMDGF 95 (637)
Q Consensus 33 girVLIVD----DD~~~re~Lk~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIlDI~-------M----PdmDGl 95 (637)
|..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. ..|.|++-+. - .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 45677775 234445555555444455443 68888888887654 3799888321 0 012345
Q ss_pred HHHHHHhc---cCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 96 KLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 96 ELLe~Ir~---~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+++..+.. ..++|||.-.+-.+.+.+.+++.+||+...+
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666632 3579999888888899999999999988655
No 154
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=67.90 E-value=57 Score=33.50 Aligned_cols=119 Identities=8% Similarity=0.108 Sum_probs=82.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
....+.|.+.-.++.....+...|....|.+..+.+.++.++.++.+++.+|.+|+..- +.+-..+..++.+ ..-+|
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP 83 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVP 83 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCcccc
Confidence 34567888999999999999999988889999999999999999988888999998761 2235667777753 45689
Q ss_pred EEEEeccCCHHHHHH-----HHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 109 VIMMSADGRVSAVMR-----GIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 109 VIILSa~~d~e~a~k-----Al~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+|++...+. ... .+.....+.-...-..+++-..+.+++.+-
T Consensus 84 ~vil~~~~~---~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 84 AIVVGDRDS---EDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp EEEESCCC---------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred EEEeccCcc---ccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 988855422 100 011222223334445677777777766543
No 155
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=67.29 E-value=64 Score=30.24 Aligned_cols=114 Identities=9% Similarity=-0.018 Sum_probs=64.6
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeEEE----ECCHHHHHHHHHHcCCCceEEEEeCCCC----CCCHHHHHHHHh
Q 006649 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHMP----DMDGFKLLEHIG 102 (637)
Q Consensus 33 girVLIVDDD~--~~re~Lk~lL~~~gy~V~~----asng~EALelLre~~~~pDLVIlDI~MP----dmDGlELLe~Ir 102 (637)
|...+++-+.+ ...+.+.+.++..+..+.. ..+..+.++.+.+.. .|.|.++.... ...+++.+++++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 44455555543 3334455555555665543 234434444444443 78887763110 113577888887
Q ss_pred cc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHH
Q 006649 103 LE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHV 149 (637)
Q Consensus 103 ~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~Lq~V 149 (637)
+. +++||++-.+-. .+.+.++++.||+..+. +.-++.+-.+.+++.
T Consensus 155 ~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~ 206 (211)
T 3f4w_A 155 KVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQV 206 (211)
T ss_dssp HHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHH
T ss_pred HHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHH
Confidence 55 478887765554 77888999999988654 444555444444433
No 156
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=66.33 E-value=51 Score=38.36 Aligned_cols=119 Identities=10% Similarity=-0.012 Sum_probs=77.9
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006649 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (637)
Q Consensus 32 ~girVLIV----DDD~~~re~Lk~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIlDI~MPd-mD-GlELLe~Ir 102 (637)
...||+|. |.|..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. +. .-++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHH
Confidence 44578877 455555667777888889999753 35688888888766 999998876653 22 344566665
Q ss_pred cc-C-CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 103 ~~-~-~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+. . +++ |++-+..-......+.+.|++.|+..--+..+....+.+.+.++
T Consensus 681 ~~G~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLGRPDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTTCTTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 43 2 444 44443122222334578899999986667787777777666554
No 157
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=65.36 E-value=12 Score=38.13 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHHHHhcc-CCCcEEEEeccC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 95 FKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 95 lELLe~Ir~~-~~IPVIILSa~~------d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+++++++|+. .++|+++|+-++ -...+.++.+.|+++.|.-....+|....++.+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 5667777765 789999886433 255688999999999999878888766555443
No 158
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=65.32 E-value=23 Score=40.62 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=75.9
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHH-H
Q 006649 33 GLRVLVV----DDDITCLRIL----EQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD----MDGF-K 96 (637)
Q Consensus 33 girVLIV----DDD~~~re~L----k~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIlDI~MPd----mDGl-E 96 (637)
..||++. |-|..=...+ ..+|+..||+|... -..++.++.+.+.. +|+|.+-..|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 4688888 4444433322 46788889999743 46788999988876 999999988875 3333 3
Q ss_pred HHHHHhcc-C--CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006649 97 LLEHIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (637)
Q Consensus 97 LLe~Ir~~-~--~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~ 153 (637)
+++.+++. . .++||+=-+-.+.+. +-+.||+.|..-.....++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 55556533 2 355554333344443 348999999887777777776666655544
No 159
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=64.73 E-value=50 Score=33.49 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=76.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC----
Q 006649 32 AGLRVLVV----DDDITCLRILEQM--------LRRC-LYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD---- 91 (637)
Q Consensus 32 ~girVLIV----DDD~~~re~Lk~l--------L~~~-gy~V~~---asng~EALelLre~~~~pDLVIlDI~MPd---- 91 (637)
...+|++. |-|..=...+..+ |+.. ||+|.. .-..++.++.+++.. +|+|.+-..|..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccch
Confidence 45677765 6666667777777 8898 999874 336778888888776 999999988875
Q ss_pred CCHH-HHHHHHhcc---CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 92 MDGF-KLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 92 mDGl-ELLe~Ir~~---~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
++.+ ++++.+++. .+++|++=-+..+.+. +.+.|++.|..--....++...+...+.+
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~---a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNEI---AKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHH---HHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 2222 345555532 2356544333334333 56789988887777777776655554433
No 160
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=63.19 E-value=22 Score=35.64 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEE-eCCCC---CCCHHHHHHHHhccCCCcEEEEeccCC
Q 006649 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLS-DVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGR 117 (637)
Q Consensus 44 ~~re~Lk~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIl-DI~MP---dmDGlELLe~Ir~~~~IPVIILSa~~d 117 (637)
...+..++++.. +..+. .+.+.+++....+. . .|.|+. -...+ +..+.++++++++..++|||+..+-.+
T Consensus 114 ~~~~~a~~~~~~-g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t 189 (264)
T 1xm3_A 114 ETLKASEQLLEE-GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGS 189 (264)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHCC-CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 344444444433 55444 45566665555443 3 576633 00001 123478888887767899999999889
Q ss_pred HHHHHHHHHcCCCeEEe
Q 006649 118 VSAVMRGIRHGACDYLI 134 (637)
Q Consensus 118 ~e~a~kAl~~GA~DYLl 134 (637)
.+.+.++++.||+..++
T Consensus 190 ~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 190 PKDAAYAMELGADGVLL 206 (264)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999998764
No 161
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=63.11 E-value=49 Score=38.33 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=76.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006649 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (637)
Q Consensus 32 ~girVLIV----DDD~~~re~Lk~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIlDI~MPd-mD-GlELLe~Ir 102 (637)
...||+|. |.|..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. +. .-++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHH
Confidence 44578877 555566667777888889999754 35688888888766 999998877653 22 344566665
Q ss_pred cc-C-CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 103 ~~-~-~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+. . +++ |++-+..-......+.+.|++.|+.--.+..++...+.+.+++
T Consensus 673 ~~G~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 673 KLGRPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HTTCTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 43 2 444 4444322222233467899999998666777776666665544
No 162
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=62.39 E-value=47 Score=33.00 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=58.1
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcCCCe
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACD 131 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPd-------mDGlELLe~Ir~~--~~IPVIILSa~~d~e~a~kAl~~GA~D 131 (637)
..|.+.+|+.+..+. .+|.|.+.-..|. .-|++.+++++.. .++|||.+.+- +.+.+.+.+..||+.
T Consensus 140 ~S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 140 RSTHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EEECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred EeCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 367888888776653 3899988543332 2378888888754 48999999876 667788999999998
Q ss_pred EEe-----CCCCHHHHHHHHHHH
Q 006649 132 YLI-----KPIREEELKNIWQHV 149 (637)
Q Consensus 132 YLl-----KPis~eEL~~~Lq~V 149 (637)
+.. +.-++.+..+.+...
T Consensus 216 vav~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 216 IVVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp EEESHHHHTCSSHHHHHHHHHHH
T ss_pred EEEeHHHhCCCCHHHHHHHHHHH
Confidence 764 444555444444433
No 163
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=62.06 E-value=36 Score=35.83 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=63.3
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC-----------CCCCH
Q 006649 32 AGLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM-----------PDMDG 94 (637)
Q Consensus 32 ~girVLIVD----DD~~~re~Lk~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIlDI~M-----------PdmDG 94 (637)
.+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+-+.- .+...
T Consensus 116 aGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 116 AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp TTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCH
T ss_pred cCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCc
Confidence 344566664 334455666665555455443 57788888776653 37988873210 01223
Q ss_pred HHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 95 FKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 95 lELLe~Ir---~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
++++..+. ...++|||.--+-.+.+.+.+++.+||+...+
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 55555552 23478999877778889999999999998654
No 164
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=60.37 E-value=59 Score=31.37 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe------CC
Q 006649 67 AVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------KP 136 (637)
Q Consensus 67 ~EALelLre~~~~pD-LVIlDI~MPdm-DG--lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl------KP 136 (637)
.+..+.+.+.. .+ ++++++.-.++ .| ++++++++...++|||...+-.+.+.+.++++.||+..+. .|
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44445454443 56 55566542221 23 8899999876789999998888888999999999998764 36
Q ss_pred CCHHHHHHHH
Q 006649 137 IREEELKNIW 146 (637)
Q Consensus 137 is~eEL~~~L 146 (637)
++++++++.+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6777776554
No 165
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=60.31 E-value=95 Score=29.58 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=40.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEE
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIl 85 (637)
...+|+++--.+...+.+++++.....++. ...+.+++++..++....+|+||+
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 456899999999999988888886555554 456788888877663345898885
No 166
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=59.29 E-value=41 Score=33.69 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=63.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~a--sng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.++++|+.+.+. +.++++++...-.|... -+..+..+.+.. .|++|+-..-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 456666655544 44444443321122222 233344455443 47777643212233566777664 356776
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.. +.....+.+..|..+++..|-+.++|.+++..++..
T Consensus 312 ~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 AS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Ee----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 52 224566778888899999999999999999988753
No 167
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=59.27 E-value=93 Score=31.28 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=70.7
Q ss_pred CccEEEEEeCC-HHHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 32 AGLRVLVVDDD-ITCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 32 ~girVLIVDDD-~~~re~Lk~lL~~~gy~V~~-as--ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
..++++|+.+. ....+.++.+....+ ++.. .. +.++..+.+.. -|++++-... +.-|..+++.+. ..+
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~ 355 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGA 355 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTC
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCC
Confidence 45788888654 444577777777766 4433 33 44555555542 5888875543 334667777764 467
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|||. |.. ....+.++.| .+++..|-+.++|.+++.+++.
T Consensus 356 Pvi~-s~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 356 IPIA-SAV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-ESS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CeEE-cCC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 8775 322 2344556667 8999999999999999998876
No 168
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.61 E-value=25 Score=30.86 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=27.0
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH
Q 006649 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE 75 (637)
Q Consensus 37 LIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre 75 (637)
|+-|.|..-++.+++.++..||+|..+++-++|+..+++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 334556666666677777777777777777777777664
No 169
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=58.25 E-value=28 Score=34.82 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCeEEE-----ECCHHHHHHHHHHcCCCceEEEE---------eCCCC---------CCCH------
Q 006649 44 TCLRILEQMLRRCLYNVTT-----CSQAAVALDILRERKGCFDVVLS---------DVHMP---------DMDG------ 94 (637)
Q Consensus 44 ~~re~Lk~lL~~~gy~V~~-----asng~EALelLre~~~~pDLVIl---------DI~MP---------dmDG------ 94 (637)
...+.++.+-+..+..|.. +.+..+..+.+.+.. .|.|++ |.+.. +..|
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~ 228 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPV 228 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHH
Confidence 3455555554444544431 234456556665544 888877 33211 1112
Q ss_pred -HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEE------eCCCCHHHHHHHHHHHH
Q 006649 95 -FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IKPIREEELKNIWQHVV 150 (637)
Q Consensus 95 -lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYL------lKPis~eEL~~~Lq~Vl 150 (637)
+++++++++..++|||...+-.+.+.+.+++..||+... ..|.-..++.+-++..+
T Consensus 229 ~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 229 ALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELM 291 (311)
T ss_dssp HHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHH
Confidence 477888876668999988888889999999999987642 34544445554444433
No 170
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=56.32 E-value=70 Score=28.74 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=69.9
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 33 girVLIVDDD~-~~re~Lk~lL~~~gy~V~~-as--ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
.++++|+.+.+ ...+.++.++...+ .|.. .. +.++..+++.. .|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 47888886643 35667777777765 4544 33 34455555532 6888885443 333667777764 4677
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
||.. . .....+.+ .|..+++..|-+.++|...+.+++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 6653 2 22344555 7888999999999999999998875
No 171
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=55.04 E-value=81 Score=34.65 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=65.4
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----------CC
Q 006649 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (637)
Q Consensus 32 ~girVLIVDD----D~~~re~Lk~lL~~~g-y~V--~~asng~EALelLre~~~~pDLVIlDI~MPd-----------mD 93 (637)
.|..++++|. ...+.+.++++-+... ..+ ..+.+.++|..+++.. .|.|++.+.-.. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCCC
Confidence 4567888873 3445555555555542 333 3677888888777653 798887442111 22
Q ss_pred HHHHHHHH---hccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 94 GFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 94 GlELLe~I---r~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.++++..+ ....++|||.--+-.+...+.+|+.+||+..+.
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 34555444 233479999888888999999999999998765
No 172
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.87 E-value=20 Score=32.91 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=31.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRR--CLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~--~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
.|.||++||-|+. ..+..++.. .++.+..+.. ....+.+......+|+||+|.
T Consensus 29 ~g~~vlliD~D~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQ--MSLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTT--CHHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCC--CCHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 4679999998853 223333332 2456655544 334444444444599999997
No 173
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=54.08 E-value=7.6 Score=38.07 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 257 ~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
..++++++|+++|. +..||.+.||+ +|+|+.
T Consensus 184 ~~~sl~~lA~~~~~-S~~~l~r~fk~-~G~t~~ 214 (276)
T 3gbg_A 184 RNWRWADICGELRT-NRMILKKELES-RGVKFR 214 (276)
T ss_dssp SCCCHHHHHHHHTC-CHHHHHHHHHT-TTCCHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHH-cCCCHH
Confidence 37899999999987 66899999987 999986
No 174
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=53.60 E-value=1.2e+02 Score=30.83 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=53.5
Q ss_pred CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC----C---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC
Q 006649 57 LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP----D---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (637)
Q Consensus 57 gy~V~-~asng~EALelLre~~~~pDLVIlDI~MP----d---mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~G 128 (637)
+..+. .+.+.+++...... ..|.|+++-.-+ + ...++++++++...++|||+-.+-.+.+.+.+++..|
T Consensus 118 gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~G 194 (328)
T 2gjl_A 118 GVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALG 194 (328)
T ss_dssp TCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHT
T ss_pred CCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 44333 46777777665543 379888863222 1 2577888888766689999888888888999999999
Q ss_pred CCeEEe
Q 006649 129 ACDYLI 134 (637)
Q Consensus 129 A~DYLl 134 (637)
|+....
T Consensus 195 AdgV~v 200 (328)
T 2gjl_A 195 ADAINM 200 (328)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 988654
No 175
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=53.23 E-value=99 Score=29.76 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCC-CC--HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe------C
Q 006649 66 AAVALDILRERKGCFD-VVLSDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------K 135 (637)
Q Consensus 66 g~EALelLre~~~~pD-LVIlDI~MPd-mD--GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl------K 135 (637)
..+.++.+.+.. ++ ++++++.-.+ .. .+++++++++..++|||.-.+-.+.+.+.++++.||+..+. .
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 445555555443 67 5556664322 12 27899999876789999988888889999999999998664 3
Q ss_pred CCCHHHHHHHH
Q 006649 136 PIREEELKNIW 146 (637)
Q Consensus 136 Pis~eEL~~~L 146 (637)
|++++++.+.+
T Consensus 231 ~~~~~~~~~~l 241 (253)
T 1thf_D 231 EIDVRELKEYL 241 (253)
T ss_dssp CSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45665555443
No 176
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.03 E-value=59 Score=31.34 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 65 ng~EALelLre~~~~pD-LVIlDI~MPdmD---GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+..+..+.+.+.. .| |.+.|....... -+++++++++..++|||+.....+.+.+.+++..||+..++
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 4555555555443 55 455677543332 24567777777789999999899999999999999888765
No 177
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=52.91 E-value=46 Score=32.48 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCceEEE-EeCCCCC-CC--HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 66 AAVALDILRERKGCFDVVL-SDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 66 g~EALelLre~~~~pDLVI-lDI~MPd-mD--GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
..+..+.+.+.. .+.|+ +++.-.+ .. .++++++++...++|||...+-.+.+.+.++++.||+..+.=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 445545555443 66555 4553211 11 378999998777899999999999899999999999987653
No 178
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=52.87 E-value=99 Score=32.27 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=64.6
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 006649 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (637)
Q Consensus 33 girVLIVD----DD~~~re~Lk~lL~~~-gy~V--~~asng~EALelLre~~~~pDLVIlDI~MPd------------mD 93 (637)
+..++.++ +.....+.++++-+.. +..| ..+.+.++|..+++.. .|.|++-.. ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aG---aD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSG---ADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566665 3344556666665554 4433 4678888888776643 798876432 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCCeE-EeCCC
Q 006649 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (637)
Q Consensus 94 GlELLe~Ir---~~~~IPVIILSa~~d~e~a~kAl~~GA~DY-LlKPi 137 (637)
-+.++..+. ...++|||.-.+-.+...+.+|+.+||+.. +-+++
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 234444442 224689998888899999999999999875 45554
No 179
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=51.41 E-value=85 Score=32.20 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=55.0
Q ss_pred hCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC
Q 006649 55 RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (637)
Q Consensus 55 ~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MP-----dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~G 128 (637)
..+..|. .+.+.+++..+.+. ..|.|+++-.-. ....++++.+++...++|||.-.+-.+.+.+.+++..|
T Consensus 122 ~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~G 198 (326)
T 3bo9_A 122 ENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALG 198 (326)
T ss_dssp HTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHT
T ss_pred HcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhC
Confidence 3344443 56777777665543 379888864221 23567888888765689999888888899999999999
Q ss_pred CCeEEe
Q 006649 129 ACDYLI 134 (637)
Q Consensus 129 A~DYLl 134 (637)
|+....
T Consensus 199 A~gV~v 204 (326)
T 3bo9_A 199 AEAVQM 204 (326)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 998765
No 180
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=51.19 E-value=91 Score=29.51 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHcCCCceEEE-EeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe------
Q 006649 65 QAAVALDILRERKGCFDVVL-SDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------ 134 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVI-lDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl------ 134 (637)
+..+.++.+.+.. .|.|+ .++.-.+. -.++.+++++...++|||+-.+-.+.+.+.++++.||+..+.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 3445455555543 67665 45543221 146778888765689999888887778889999999998754
Q ss_pred CCCCHHHHHHHH
Q 006649 135 KPIREEELKNIW 146 (637)
Q Consensus 135 KPis~eEL~~~L 146 (637)
.+.+.+++.+.+
T Consensus 233 ~~~~~~~~~~~l 244 (253)
T 1h5y_A 233 RVLSIAQVKRYL 244 (253)
T ss_dssp TSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 345555555443
No 181
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=51.10 E-value=19 Score=35.52 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHH---HHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMMSADGRVS---AVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa~~d~e---~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
++++++++++..++|+++++ +.+.. .+..+.+.||+.++.-....+++.+.+..+
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 56778888877789998875 22221 123488999999998666666665555543
No 182
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=51.06 E-value=15 Score=37.29 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=40.3
Q ss_pred HHHHHHHHhcc-CCCcEEEEec------cCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006649 94 GFKLLEHIGLE-MDLPVIMMSA------DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (637)
Q Consensus 94 GlELLe~Ir~~-~~IPVIILSa------~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~ 148 (637)
.+++++++|+. .++|+|+|+= +.-...+.++.+.|+++.|+--+..+|.......
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 36677777765 7899999873 2335568899999999999977777775544443
No 183
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=50.99 E-value=1.9e+02 Score=30.43 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=60.6
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCC------------
Q 006649 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM------------ 92 (637)
Q Consensus 32 ~girVLIVDD----D~~~re~Lk~lL~~~-gy~V~--~asng~EALelLre~~~~pDLVIlDI~MPdm------------ 92 (637)
.|..++.+|- .....+.++.+-+.. +..|. .+.+.++|..+++. ..|.|.+.+. |+.
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~ 186 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGV 186 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccH
Confidence 4566788762 233334444443332 34443 47788888877754 3799888543 321
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 93 DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..++.+.++..... |||.-.+-.+...+.+|+.+||+...+
T Consensus 187 p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 187 PMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp CHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 23444444432222 888877888899999999999987654
No 184
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=50.96 E-value=64 Score=30.53 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=55.2
Q ss_pred HHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-----CCC----CCHHHHHHHHhccCCCcEEEEecc
Q 006649 47 RILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MPD----MDGFKLLEHIGLEMDLPVIMMSAD 115 (637)
Q Consensus 47 e~Lk~lL~~~-gy~V-~~asng~EALelLre~~~~pDLVIlDI~-----MPd----mDGlELLe~Ir~~~~IPVIILSa~ 115 (637)
+.++.+-+.. +..+ ..+.+.+++.++... ..|+|.+-.. ..+ ..+++++++++...++|||...+-
T Consensus 108 ~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI 184 (223)
T 1y0e_A 108 ELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNV 184 (223)
T ss_dssp HHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCC
Confidence 3344433332 4433 466777787765432 2788754321 011 124667888876568999988888
Q ss_pred CCHHHHHHHHHcCCCeEEeC
Q 006649 116 GRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 116 ~d~e~a~kAl~~GA~DYLlK 135 (637)
.+.+.+.++++.||+..+.=
T Consensus 185 ~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 185 ITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 89999999999999987653
No 185
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=50.08 E-value=3.9 Score=41.50 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=46.2
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHHcCCCceEEEEeCCCC-CCC--HHHHHHH-Hhcc
Q 006649 33 GLRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAV--ALDILRERKGCFDVVLSDVHMP-DMD--GFKLLEH-IGLE 104 (637)
Q Consensus 33 girVLIVDDD--~~~re~Lk~lL~~~gy~V~~asng~E--ALelLre~~~~pDLVIlDI~MP-dmD--GlELLe~-Ir~~ 104 (637)
+.|||||+++ +.....|.+.|+..+++|......+- -.+.|. . +|+||++-... ..+ -++.++. ++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~--yDvIIl~d~~~~~l~~~~~~~L~~yV~-- 77 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--K--QDLVILSDYPAERMTAQAIDQLVTMVK-- 77 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--T--CSEEEEESCCGGGBCHHHHHHHHHHHH--
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--c--CCEEEEcCCccccCCHHHHHHHHHHHH--
Confidence 4589999988 66788899999998999877654321 112232 3 89998862221 122 2233322 22
Q ss_pred CCCcEEEEeccCC
Q 006649 105 MDLPVIMMSADGR 117 (637)
Q Consensus 105 ~~IPVIILSa~~d 117 (637)
..--+|++.+...
T Consensus 78 ~GGgLi~~gG~~s 90 (259)
T 3rht_A 78 AGCGLVMLGGWES 90 (259)
T ss_dssp TTCEEEEECSTTS
T ss_pred hCCeEEEecCccc
Confidence 2455777765443
No 186
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=49.90 E-value=50 Score=32.24 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 65 ng~EALelLre~~~~pD-LVIlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
+..+..+.+.+.. .| |.+.|....+. .-+++++++++..++|||+.....+.+.+.++++.||+..++=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4555555555543 55 55567654322 1278888998777899999877788888999999999987664
No 187
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=49.84 E-value=1.2e+02 Score=31.58 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=52.9
Q ss_pred CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCC---------CC-------CCHHHHHHHHhccCCCcEEEEeccCCHH
Q 006649 57 LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM---------PD-------MDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (637)
Q Consensus 57 gy~V-~~asng~EALelLre~~~~pDLVIlDI~M---------Pd-------mDGlELLe~Ir~~~~IPVIILSa~~d~e 119 (637)
+..| ..+.+.+++....+. .+|.|+++-.- +. .+.++++++++...++|||...+-.+.+
T Consensus 145 g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~ 221 (369)
T 3bw2_A 145 GTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGG 221 (369)
T ss_dssp TCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred CCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHH
Confidence 4443 356777777655442 38999885411 10 2348888888766689999888777899
Q ss_pred HHHHHHHcCCCeEEe
Q 006649 120 AVMRGIRHGACDYLI 134 (637)
Q Consensus 120 ~a~kAl~~GA~DYLl 134 (637)
.+.+++..||+....
T Consensus 222 ~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 222 QIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999887553
No 188
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=49.37 E-value=74 Score=30.15 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=48.4
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 63 CSQAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 63 asng~EALelLre~~~~pD-LVIlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..+..+..+.+.+.. .| |.+.|...... ..+++++++++..++|+++-....+.+.+.++++.||+...+
T Consensus 32 ~~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 32 VGDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp EECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 345566666666543 77 55666544222 246777888766789999887778888899999999887664
No 189
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=49.23 E-value=3.1 Score=43.93 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 45 CLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 45 ~re~Lk~lL~~~gy~V~~--asng~EALelLre~~~~pDLVIlDI 87 (637)
+.+.++.+-+..++.|.. ..+..+.+.........|||++++.
T Consensus 20 ~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 64 (449)
T 3iot_A 20 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 64 (449)
T ss_dssp HHHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEET
T ss_pred HHHHHHHHhhccCCEEEEEecHHHHHHHHHHhhCCCCCCEEEeCc
Confidence 344444433333555543 3444555544444344699998764
No 190
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=48.98 E-value=9.3 Score=39.83 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCCCHHHHHhhhccchhhHHHHHHHHHhCCCCC
Q 006649 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (637)
Q Consensus 256 v~gLti~EVAshVGy~d~qYFrk~FKk~~G~T~q 289 (637)
...+++.++|+++|+ +..||.+.||+.+|+|++
T Consensus 319 ~~~~~~~~~a~~~~~-s~~~l~r~f~~~~g~s~~ 351 (412)
T 4fe7_A 319 CKGIKVDQVLDAVGI-SRSNLEKRFKEEVGETIH 351 (412)
T ss_dssp GGTCCHHHHHHHTTC-CHHHHHHHHHHHHSSCHH
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHH
Confidence 468999999999997 557999999999999986
No 191
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=48.84 E-value=1.2e+02 Score=33.03 Aligned_cols=102 Identities=16% Similarity=0.248 Sum_probs=64.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCC--------------CCC
Q 006649 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MPD 91 (637)
Q Consensus 33 girVLIVD----DD~~~re~Lk~lL~~~-gy~V~--~asng~EALelLre~~~~pDLVIlDI~--------------MPd 91 (637)
|..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+.+.. .|.|.+-.. +|.
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~ 343 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQ 343 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCH
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccc
Confidence 44455552 2233445555555554 44443 467777777766543 687777331 112
Q ss_pred CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE-EeCCC
Q 006649 92 MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (637)
Q Consensus 92 mDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY-LlKPi 137 (637)
...+.++.+++...++|||.-.+-.+...+.+|+.+||+.. +-.++
T Consensus 344 ~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 344 GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred hhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 23466677776656899998888888999999999999875 34443
No 192
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=48.45 E-value=1.1e+02 Score=33.35 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=65.3
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006649 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (637)
Q Consensus 32 ~girVLIVD----DD~~~re~Lk~lL~~~-gy~V--~~asng~EALelLre~~~~pDLVIlDI~MPd------------m 92 (637)
.|..++++| +.....+.++++-+.. +..| ..+.+.++|..++... .|.|.+-+. |+ .
T Consensus 240 aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~vg~g-~Gs~~~t~~~~g~g~ 315 (490)
T 4avf_A 240 AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAG---ADAVKVGIG-PGSICTTRIVAGVGV 315 (490)
T ss_dssp TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTCHHHHHTCBCC
T ss_pred cccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcC---CCEEEECCC-CCcCCCccccCCCCc
Confidence 355677776 4455566666666654 3333 3477888887776543 798887321 11 1
Q ss_pred CHHHHHHHHhc---cCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 93 DGFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 93 DGlELLe~Ir~---~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..++++..+.+ ..++|||.-.+-.+.+.+.+|+.+||+...+
T Consensus 316 p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 316 PQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp CHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 23455555532 3479999888888999999999999987655
No 193
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=48.31 E-value=51 Score=31.20 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=45.1
Q ss_pred EECCHHHHHHHHHHcCCCceEEEE----eCCCC----CCCHHHHHHHHhccCC-CcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 62 TCSQAAVALDILRERKGCFDVVLS----DVHMP----DMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIl----DI~MP----dmDGlELLe~Ir~~~~-IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
.+.+..++..... .. +|.|++ +.... ...|++.+++++...+ +||++..+-. .+.+.++++.||+..
T Consensus 122 s~~t~~e~~~a~~-~g--~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEE-DG--ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHH-HT--CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHh-CC--CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 3577777655443 33 899886 32111 1236888888875555 8988876655 667778888999876
Q ss_pred E
Q 006649 133 L 133 (637)
Q Consensus 133 L 133 (637)
.
T Consensus 198 ~ 198 (227)
T 2tps_A 198 S 198 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 194
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=48.20 E-value=20 Score=36.38 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHhccCCCcEEEEecc------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~------~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+++++++|...++|||+|+-+ .....+.++.+.|++++|.-.+..+++......+
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 567778876678999998422 2234567799999999998777777766555443
No 195
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=47.86 E-value=73 Score=30.72 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc-----C-CCeEE
Q 006649 65 QAAVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYL 133 (637)
Q Consensus 65 ng~EALelLre~~~~pD-LVIlDI~----MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~-----G-A~DYL 133 (637)
+..+..+.+.+.. ++ ++++++. +.+. .+++++++++..++|||...+-.+.+.+.++++. | |+..+
T Consensus 145 ~~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEYG--LEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTT--CCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 4555555554433 67 5666653 2333 3888998876668999998888888999999988 9 88765
Q ss_pred e------CCCCHHHHHHH
Q 006649 134 I------KPIREEELKNI 145 (637)
Q Consensus 134 l------KPis~eEL~~~ 145 (637)
. .+++.+++++.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 3 57777776654
No 196
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=47.27 E-value=81 Score=33.23 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC---------C--CCCHHHHHHHHhc---cC
Q 006649 43 ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM---------P--DMDGFKLLEHIGL---EM 105 (637)
Q Consensus 43 ~~~re~Lk~lL~~~-gy~V~--~asng~EALelLre~~~~pDLVIlDI~M---------P--dmDGlELLe~Ir~---~~ 105 (637)
....+.++.+-+.. +..|. .+.+.++|..+.+ . ..|.|++-..- . +.-.++.+..++. ..
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34455555544444 44444 4667777765543 2 38988882110 0 1123555555532 35
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 106 ~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
++|||...+-.+.+.+.+++.+||+...+
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999888888899999999999988655
No 197
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=47.04 E-value=1.2e+02 Score=31.24 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=38.9
Q ss_pred HHHHHHHhccCCCcEEE--EeccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIM--MSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (637)
Q Consensus 95 lELLe~Ir~~~~IPVII--LSa~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~Lq~Vlr 151 (637)
++++++++...++|||+ -.+-.+.+.+.+++..||+.++. |.-++.+..+.+...+.
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~ 259 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVS 259 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHH
Confidence 56777776556788774 44556889999999999999875 44455555444444443
No 198
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=46.39 E-value=1e+02 Score=31.97 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=69.1
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~-~~re~Lk~lL~~~gy~V~-~as-ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
.++++||.+.+ ..++.++++....+-.|. ... +.++..+.+.. .|++++-... +.-|+-+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHH--CCCCE
Confidence 57888887654 456777777766543443 233 33333355543 5887774432 333566777664 36787
Q ss_pred EEEeccCCHHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~G---------A~DYLlKPis~eEL~~~Lq~Vl 150 (637)
|.. . .....+.+..| ..+++..|-+.++|.+++.+++
T Consensus 393 I~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 393 VVA-R---TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EEE-S---SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EEe-C---CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 763 2 23455667777 7899999999999999999887
No 199
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=45.93 E-value=1.3e+02 Score=29.68 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=39.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.|++++.- |.-+++.+. ..+|||....... ..+.++.| .+++..+ +.++|.+++.+++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57777643 444556553 3678886522122 23456778 8898877 99999999998875
No 200
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=45.77 E-value=29 Score=33.98 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC---CC-CCC-CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 65 QAAVALDILRERKGCFDVVLSDV---HM-PDM-DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI---~M-Pdm-DGlELLe~Ir~~~~IPVI--ILSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
+-.+.++.+.+.. .|++=+|+ +. |.. .|.++++.||+..+.|+. +++. +-..++..+.+.||+....-..
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcc
Confidence 4455666665433 67666665 21 232 378999999876566665 6663 3345778899999998866655
Q ss_pred --CHHHHHHHHHHH
Q 006649 138 --REEELKNIWQHV 149 (637)
Q Consensus 138 --s~eEL~~~Lq~V 149 (637)
..+++.+.++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 445566666555
No 201
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=45.23 E-value=30 Score=33.55 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---------HHHHHHHHhccCCCcEEEEecc
Q 006649 49 LEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFD-VVLSDVHMPDMD---------GFKLLEHIGLEMDLPVIMMSAD 115 (637)
Q Consensus 49 Lk~lL~~~gy~V~~-as--ng~EALelLre~~~~pD-LVIlDI~MPdmD---------GlELLe~Ir~~~~IPVIILSa~ 115 (637)
+.+.++..+..+.. ++ +..+.++.+... .| +|.+ +..++.. +++.+++++...++||++-.+-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI 200 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGV 200 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCC
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeec
Confidence 33344444544332 22 345666665544 24 5544 3335432 3567777766567998887777
Q ss_pred CCHHHHHHHHHcCCCeEEeC
Q 006649 116 GRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 116 ~d~e~a~kAl~~GA~DYLlK 135 (637)
...+.+.+.+..||+..+.=
T Consensus 201 ~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 201 SKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 77788989999999998864
No 202
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=44.12 E-value=1.6e+02 Score=26.20 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=65.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--h--C--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006649 33 GLRVLVVDDDITCLRILEQMLR--R--C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~--~--~--gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~ 106 (637)
.++++|+.+.+.. +.+++++. . . ...+.-.-+.++..+++.. .|++|+=.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677777654321 23333333 2 1 2233334455566666654 588886332 2334667777764 46
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 107 IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
+|||.. +.....+.+..|..+++. +-+.++|.+++.+++..
T Consensus 122 ~PvI~~----~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAV----NEGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEE----SSHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEe----CCCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 787753 224455667778889999 99999999999988754
No 203
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=43.49 E-value=1e+02 Score=26.89 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=51.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng--~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
.|++|.++|.++...+.++. .++.+.. .++ .+.++.+.-. ..|+||+-+.-.. +-..++..++. .+.++
T Consensus 29 ~g~~v~vid~~~~~~~~~~~----~g~~~i~-gd~~~~~~l~~a~i~--~ad~vi~~~~~~~-~n~~~~~~a~~~~~~~~ 100 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELRE----RGVRAVL-GNAANEEIMQLAHLE--CAKWLILTIPNGY-EAGEIVASARAKNPDIE 100 (140)
T ss_dssp TTCCEEEEESCHHHHHHHHH----TTCEEEE-SCTTSHHHHHHTTGG--GCSEEEECCSCHH-HHHHHHHHHHHHCSSSE
T ss_pred CCCCEEEEECCHHHHHHHHH----cCCCEEE-CCCCCHHHHHhcCcc--cCCEEEEECCChH-HHHHHHHHHHHHCCCCe
Confidence 35678999998876655443 4666543 222 2334332222 3788887543211 22334444543 35677
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
||... .+.+......+.|++..+.
T Consensus 101 iiar~--~~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 101 IIARA--HYDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEEE--SSHHHHHHHHHTTCSEEEE
T ss_pred EEEEE--CCHHHHHHHHHCCCCEEEC
Confidence 66655 3445566667889875553
No 204
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=43.41 E-value=65 Score=31.24 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 65 ng~EALelLre~~~~pD-LVIlDI~MP---dmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+..+..+.+.+.. .| |.+.|+.-. ...-+++++++++...+|||+--.-.+.+.+.+++..||+..++
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 4555555555543 56 445677432 12237889999877889999988888899999999999876654
No 205
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.29 E-value=26 Score=29.36 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccc--hhhHHHHHHHHHhCCCC
Q 006649 248 KRILELMNVPGLTRENVASHLQEI--NLQKFRLYLKRLNGVSQ 288 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~--d~qYFrk~FKk~~G~T~ 288 (637)
+.|+.|+. .|++..|||..+|.+ ..+++.+..++.+|+..
T Consensus 35 ~~Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~ 76 (90)
T 3ulq_B 35 CLILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGS 76 (90)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 45777766 899999999999985 44444444555556543
No 206
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=42.73 E-value=1.6e+02 Score=29.28 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=62.5
Q ss_pred HHHHHHhCCCe--EEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHH
Q 006649 49 LEQMLRRCLYN--VTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 49 Lk~lL~~~gy~--V~~as-ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~--~~~IPVIILSa~~d~e~a~k 123 (637)
+++.|..-... +.... +..+.++.+.... +|.||+|+.=...+.-++...++. ....++++=....+...+..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 45556543222 22323 3455666665544 999999998766666555555532 23455666555567788999
Q ss_pred HHHcCCCeEEe-CCCCHHHHHHHHHHH
Q 006649 124 GIRHGACDYLI-KPIREEELKNIWQHV 149 (637)
Q Consensus 124 Al~~GA~DYLl-KPis~eEL~~~Lq~V 149 (637)
++..|++..++ |--+.++++.+.+.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999987544 444788888776654
No 207
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=42.51 E-value=19 Score=30.48 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
.+||++|...|++..|||..||.+. +--++.++++
T Consensus 20 ~~IL~lL~~~g~sa~eLAk~LgiSk-~aVr~~L~~L 54 (82)
T 1oyi_A 20 CEAIKTIGIEGATAAQLTRQLNMEK-REVNKALYDL 54 (82)
T ss_dssp HHHHHHHSSSTEEHHHHHHHSSSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHHHH
Confidence 6788999888899999999999876 4466667766
No 208
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=42.39 E-value=1.2e+02 Score=31.42 Aligned_cols=108 Identities=10% Similarity=0.035 Sum_probs=65.7
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEE-EECCHHHH-HHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVT-TCSQAAVA-LDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 33 girVLIVDDD-~~~re~Lk~lL~~~gy~V~-~asng~EA-LelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
.++++||.+. ....+.++++....+-.|. ...-..+. .+.+.. .|++++--. .+.-|+-+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 5677777544 3456666666665443343 22222333 344443 477776443 2333556666653 35787
Q ss_pred EEEeccCCHHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 006649 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~G---------A~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
|.. +.....+.+..| ..+++..|-+.++|.+++.+++.
T Consensus 394 I~s----~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVR----RTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEE----SSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EEC----CCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 753 223455667777 88999999999999999998873
No 209
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=41.45 E-value=1.1e+02 Score=31.15 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=53.0
Q ss_pred CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCC
Q 006649 57 LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGAC 130 (637)
Q Consensus 57 gy~V~-~asng~EALelLre~~~~pDLVIlDI~M-----PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~ 130 (637)
++.+. .+.+.+++..+.+ . ..|.|+++-.- .....++++++++...++|||...+-.+.+.+.+++..||+
T Consensus 110 g~~v~~~v~~~~~a~~~~~-~--GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAd 186 (332)
T 2z6i_A 110 GIIVIPVVPSVALAKRMEK-I--GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAE 186 (332)
T ss_dssp TCEEEEEESSHHHHHHHHH-T--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCS
T ss_pred CCeEEEEeCCHHHHHHHHH-c--CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC
Confidence 44443 4667776655443 3 38988886321 12346888888876678999988888889999999999998
Q ss_pred eEEe
Q 006649 131 DYLI 134 (637)
Q Consensus 131 DYLl 134 (637)
....
T Consensus 187 gV~v 190 (332)
T 2z6i_A 187 AVQV 190 (332)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7543
No 210
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=41.33 E-value=1.4e+02 Score=28.47 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc---CCCeEEe----
Q 006649 66 AAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI---- 134 (637)
Q Consensus 66 g~EALelLre~~~~pD-LVIlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~---GA~DYLl---- 134 (637)
..+.++.+.+.. +| ++++++.-.+. -.+++++++++..++|||.-.+-.+.+.+.++++. ||+..+.
T Consensus 151 ~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSEG--CSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHTT--CCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhCC--CCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 455555555543 67 44567654322 24788888876678999998888888999999998 9987654
Q ss_pred --CCCCHHHHHH
Q 006649 135 --KPIREEELKN 144 (637)
Q Consensus 135 --KPis~eEL~~ 144 (637)
.|....++++
T Consensus 229 ~~~~~~~~~~~~ 240 (244)
T 2y88_A 229 YARRFTLPQALA 240 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCcCHHHHHH
Confidence 4656555544
No 211
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=41.12 E-value=2.2e+02 Score=29.74 Aligned_cols=90 Identities=9% Similarity=0.044 Sum_probs=55.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCC
Q 006649 35 RVLVVDDDITCLRILEQMLR----RCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (637)
Q Consensus 35 rVLIVDDD~~~re~Lk~lL~----~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I-r~~~~I 107 (637)
-|||-|.+....-.+...++ ... .....+.+.+++.+.++. ..|+|.+|-. +- +.++++ +....-
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~~-~~l~~av~~l~~~ 275 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----SL-EMMREAVKINAGR 275 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----CH-HHHHHHHHHHTTS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----CH-HHHHHHHHHhCCC
Confidence 36777766443323333332 222 233578999999888874 3899999973 32 333333 322222
Q ss_pred cEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 108 PVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
..|..|+--+.+.+.+..+.|++.+
T Consensus 276 v~ieaSGGIt~~~I~~~a~tGVD~i 300 (320)
T 3paj_A 276 AALENSGNITLDNLKECAETGVDYI 300 (320)
T ss_dssp SEEEEESSCCHHHHHHHHTTTCSEE
T ss_pred CeEEEECCCCHHHHHHHHHcCCCEE
Confidence 4567888889999998889998554
No 212
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=41.02 E-value=1.1e+02 Score=29.36 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc---CCCeEEe---
Q 006649 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI--- 134 (637)
Q Consensus 65 ng~EALelLre~~~~pD-LVIlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~---GA~DYLl--- 134 (637)
+..+..+.+.+.. +| ++++++.-.++ -.++++++++...++|||.-.+-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 4555555555443 67 55567642221 13788888876668999998888888999999999 9988654
Q ss_pred ---CCCCHHHHHHH
Q 006649 135 ---KPIREEELKNI 145 (637)
Q Consensus 135 ---KPis~eEL~~~ 145 (637)
.|++..++.+.
T Consensus 225 l~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 225 LYAKAFTLEEALEA 238 (244)
T ss_dssp HHTTSSCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 45565555443
No 213
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=40.32 E-value=41 Score=34.12 Aligned_cols=78 Identities=9% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCeEEEECCH--------HHHHHHH----HHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHH
Q 006649 57 LYNVTTCSQA--------AVALDIL----RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (637)
Q Consensus 57 gy~V~~asng--------~EALelL----re~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kA 124 (637)
+.++..++++ +++.+.+ ++.. ||+||.=---|..-|-.-.+++-...++|.|+++-..... ++++
T Consensus 32 dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~ 108 (283)
T 1qv9_A 32 DVEFRVVGTSVKMDPECVEAAVEMALDIAEDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDE 108 (283)
T ss_dssp SEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHH
T ss_pred CceEEEeccCCCCCHHHHHHHHHHhhhhhhhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHH
Confidence 4566666655 3444444 5555 9999986666667788888877666899999998765554 6688
Q ss_pred HHcCCCeEEeCCC
Q 006649 125 IRHGACDYLIKPI 137 (637)
Q Consensus 125 l~~GA~DYLlKPi 137 (637)
++..-.+||+-+.
T Consensus 109 l~~~g~GYIivk~ 121 (283)
T 1qv9_A 109 MEEQGLGYILVKP 121 (283)
T ss_dssp HHHTTCEEEEETT
T ss_pred HHhcCCcEEEEec
Confidence 8888888987654
No 214
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=40.26 E-value=24 Score=33.17 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE--EeccC-CHHHHHHHHHcCCCeEEeCCCC
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADG-RVSAVMRGIRHGACDYLIKPIR 138 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir~~-~~IPVII--LSa~~-d~e~a~kAl~~GA~DYLlKPis 138 (637)
+.+++++.++......| ++++.++- .+|.++++.|++. ++.|+++ +.. + -..++..+.+.||+....-+..
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh~~~ 87 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTM-DAGELEADIAFKAGADLVTVLGSA 87 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEeccC
Confidence 45666666654431123 35665542 3567788888765 3778774 432 2 2345788999999888777765
Q ss_pred H-HHHHHHHHH
Q 006649 139 E-EELKNIWQH 148 (637)
Q Consensus 139 ~-eEL~~~Lq~ 148 (637)
. +.+..+++.
T Consensus 88 ~~~~~~~~~~~ 98 (207)
T 3ajx_A 88 DDSTIAGAVKA 98 (207)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 4 555544444
No 215
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=40.07 E-value=1.9e+02 Score=31.61 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=65.5
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006649 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (637)
Q Consensus 32 ~girVLIVD----DD~~~re~Lk~lL~~~-gy~V--~~asng~EALelLre~~~~pDLVIlDI~MPd------------m 92 (637)
.|..++++| +.....+.++++-+.. ...| ..+.+.++|..+++.. .|.|++.+. |+ .
T Consensus 242 aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g-~Gs~~~tr~~~g~g~ 317 (496)
T 4fxs_A 242 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 317 (496)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CCTTBCHHHHHCCCC
T ss_pred ccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCC-CCcCcccccccCCCc
Confidence 356677776 4455666777766664 3333 3577888887776643 798887532 21 1
Q ss_pred CHHHHHHHHhc---cCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 93 DGFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 93 DGlELLe~Ir~---~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.-++++..+.. ..++|||.-.+-.+.+.+.+|+..||+...+
T Consensus 318 p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 318 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 23444454432 3479999877888899999999999987765
No 216
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=40.05 E-value=1.5e+02 Score=30.07 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=63.8
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006649 33 GLRVLVVDDD---ITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (637)
Q Consensus 33 girVLIVDDD---~~~re~Lk~lL~~~gy--~V~~as--ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~ 105 (637)
.++++|+.+. ....+.+++++...+. .|.... +.++..+.+.. .|++|+-.. .+.-|.-+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4667777651 1234455555555432 243333 33555555543 477776432 2333566777663 4
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 106 ~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.+|||.. ... ...+.+..|..+++..|-+.++|.+++..++.
T Consensus 349 G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 6787753 332 23455667888999999999999999998875
No 217
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=39.25 E-value=2.9e+02 Score=27.93 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=60.1
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHH
Q 006649 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (637)
Q Consensus 49 Lk~lL~~~gy~V~~--asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir--~~~~IPVIILSa~~d~e~a~kA 124 (637)
+++.|..-...+.. -.+..+.++.+.... +|.|++|..=...+--.+...++ .....++++=+...+...+..+
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~G--aD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ 107 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAGAG--FDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQL 107 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTSC--CSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHhCC--CCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 55556542213332 233345556555443 99999999554444444444443 2235677877777788889999
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 006649 125 IRHGACDYLI-KPIREEELKNIWQH 148 (637)
Q Consensus 125 l~~GA~DYLl-KPis~eEL~~~Lq~ 148 (637)
++.|++..++ |--+.++++.+++.
T Consensus 108 ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 108 LDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999986443 33468887766554
No 218
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=39.22 E-value=2.1e+02 Score=28.38 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=54.7
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 34 irVLIV-DDD~~~re~Lk~lL~~~gy~V~~as--ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
++++++ .+.+..++.+++++... -.|.... ...+..+++.. -|++++.- .|+ +++.+. ..+|+|
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~~----ad~~v~~S-----~g~-~lEA~a--~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMRA----SLLLVTDS-----GGL-QEEGAA--LGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHT----EEEEEESC-----HHH-HHHHHH--TTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHHh----CcEEEECC-----cCH-HHHHHH--cCCCEE
Confidence 556664 55554555555554321 2344332 22233344332 57777643 355 445543 578988
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
+.......... ++.| .+++.. .+.++|.+++.+++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 75433333332 4455 467774 499999999988874
No 219
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=39.03 E-value=1.3e+02 Score=27.88 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=49.5
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 006649 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 28 ~~fp~girVLIVDDD~~~re~Lk~lL~~~gy--~V-~~asng~EALelLre~~-~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
..+|.+.+|..||-++...+..++.+...+. .+ ....++.+.+..+.... ..+|+|++|...+ +-.++++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 3456567999999999999999998887654 23 35677777776555421 3499999996532 234555555
No 220
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=38.47 E-value=3.1e+02 Score=27.22 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=59.2
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHH
Q 006649 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (637)
Q Consensus 49 Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir--~~~~IPVIILSa~~d~e~a~kA 124 (637)
+++.|..-. +.+.......+.++.+.... +|.|++|..=.-.+--++...++ .....++++=+...+...+..+
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~~G--aD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~ 86 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTTC--CSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 455555422 22333333445556555443 99999998554444444444443 2235667776667788889999
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 006649 125 IRHGACDYLI-KPIREEELKNIWQH 148 (637)
Q Consensus 125 l~~GA~DYLl-KPis~eEL~~~Lq~ 148 (637)
++.|++..++ |--+.++++.+++.
T Consensus 87 l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999986433 33478887766554
No 221
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=37.53 E-value=1.3e+02 Score=33.97 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=67.5
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhc
Q 006649 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGL 103 (637)
Q Consensus 33 girVLIV----DDD~~~re~Lk~lL~~~gy~V~~a---sng~EALelLre~~~~pDLVIlDI~MPd-mD-GlELLe~Ir~ 103 (637)
+-+||++ |-|..=...+..+|+..||+|... -..++.++.+++.. +|+|.+-..|.. ++ --++++.+++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578877 667777888889999999999754 35778888888776 999999887753 22 1234555643
Q ss_pred -cCCCcEEEEeccCCHHHHHHHH---HcCCCeEEeCC
Q 006649 104 -EMDLPVIMMSADGRVSAVMRGI---RHGACDYLIKP 136 (637)
Q Consensus 104 -~~~IPVIILSa~~d~e~a~kAl---~~GA~DYLlKP 136 (637)
..++||++=-+-...+++..-+ -.||+.|-...
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSH
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECCH
Confidence 3578876655545555442111 12888776543
No 222
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=37.46 E-value=1.5e+02 Score=28.35 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHcCCCceEE-EEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 65 QAAVALDILRERKGCFDVV-LSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 65 ng~EALelLre~~~~pDLV-IlDI~MPdm---DGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
+..+..+.+.+.. .|.| +.|...... ..+++++.+++..++|+++-..-.+.+.+.++++.||+..++-
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4445555555433 5644 445432221 2356777787767899999888888899999999999877653
No 223
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=37.19 E-value=1.4e+02 Score=28.60 Aligned_cols=70 Identities=24% Similarity=0.327 Sum_probs=47.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy--~V-~~asng~EALelLre~---~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
+|.+-+|..||-++...+..++.+...++ .+ ....++.+.+..+... ...+|+|++|...+ +-.++++.+
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~ 167 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERL 167 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHH
Confidence 35567999999999999999999987765 24 3567777776655321 23599999996422 234455554
No 224
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=36.87 E-value=1.7e+02 Score=29.00 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 105 ~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
..+|||........ .+.++.| .+++..| +.++|.+++.+++.
T Consensus 300 ~G~PvI~~~~~~~~---~e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTER---PEAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSC---HHHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCc---chhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 46898865332332 2335668 8899988 99999999998875
No 225
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=36.59 E-value=2.3e+02 Score=28.49 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=64.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~-gy~V~-~as-ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~ 106 (637)
|..+|||-||--=..-+..+...+... ++++. .|+ +.+.|-+..++.. ..-+..|+ -+++ ..++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------~ell----~~~~ 86 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-------EEML----ASDV 86 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------HHHH----HCSS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-------HHHh----cCCC
Confidence 456789999987766665555555543 56665 444 3334444444432 22233332 2222 2345
Q ss_pred CcEEEEeccC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006649 107 LPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (637)
Q Consensus 107 IPVIILSa~~--d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vl 150 (637)
+-+|+++... -.+.+.+|++.|..=|+-||+ +.+|..++++.+-
T Consensus 87 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 134 (350)
T 4had_A 87 IDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARD 134 (350)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHH
Confidence 5555554433 367889999999999999997 5677777776553
No 226
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=36.49 E-value=1.4e+02 Score=29.33 Aligned_cols=106 Identities=24% Similarity=0.344 Sum_probs=61.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.++++|+.+.+ .+.++.+++..+ -.|......++..+.+.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEE
Confidence 35666665533 134444444332 234444433344444443 4777764432 334666777664 367887
Q ss_pred EEeccCCHHHHHHHHHcCCCeEEeC-CCCHHHHHHHHHHHHH
Q 006649 111 MMSADGRVSAVMRGIRHGACDYLIK-PIREEELKNIWQHVVR 151 (637)
Q Consensus 111 ILSa~~d~e~a~kAl~~GA~DYLlK-Pis~eEL~~~Lq~Vlr 151 (637)
......- .+.+..|..+++.. |.+.++|.+++.+++.
T Consensus 299 ~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 6433222 23455677889997 8999999999998875
No 227
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=36.32 E-value=2.3e+02 Score=29.25 Aligned_cols=65 Identities=12% Similarity=-0.012 Sum_probs=44.0
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
..+.+.+++.+.++. ..|+|.+|-.-| -++.+.++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn~~~----~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDNFTL----DMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEESCCH----HHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 468899998888874 389999997332 23333333222233566788888888888888999544
No 228
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=36.03 E-value=27 Score=26.61 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCCHHHHHhhhcc-chhhHHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQE-INLQKFRLYLK 281 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy-~d~qYFrk~FK 281 (637)
+|.+++..-|+|..++|..+|. .+.++++++.+
T Consensus 12 ~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 12 KLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 3445555679999999999995 56666666655
No 229
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=35.01 E-value=1.3e+02 Score=28.74 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=54.5
Q ss_pred HHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEE---EEeCCCCC-----CCHHHHHHHHhccCCCcEEEEeccC
Q 006649 47 RILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVV---LSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSADG 116 (637)
Q Consensus 47 e~Lk~lL~~~-gy~V~-~asng~EALelLre~~~~pDLV---IlDI~MPd-----mDGlELLe~Ir~~~~IPVIILSa~~ 116 (637)
+.++.+-+.. +..+. .+.+.+++...... ..|+| +..+. |+ ...++++++++.. ++|||...+-.
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~ 196 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKIH 196 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCCC
Confidence 3444433332 34433 56777887766553 27887 33221 21 1246888888766 89999888888
Q ss_pred CHHHHHHHHHcCCCeEEe
Q 006649 117 RVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 117 d~e~a~kAl~~GA~DYLl 134 (637)
+.+.+.++++.||+..+.
T Consensus 197 s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 197 SPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp SHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 899999999999988754
No 230
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=35.00 E-value=77 Score=29.82 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=50.4
Q ss_pred HHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHc
Q 006649 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRH 127 (637)
Q Consensus 52 lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI~MP-dmDGlELLe~Ir~~~--~IPVIILSa~~d~e~a~kAl~~ 127 (637)
..+..+..+ ..+.+..++.+..+. ..|.|++ .| +..|++.+++++... ++||+...+-. .+.+.++++.
T Consensus 96 ~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~ 168 (212)
T 2v82_A 96 RAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDA 168 (212)
T ss_dssp HHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHH
T ss_pred HHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHc
Confidence 334445442 237788888766542 3898886 22 123678888886543 48988877765 6778888899
Q ss_pred CCCeEEe
Q 006649 128 GACDYLI 134 (637)
Q Consensus 128 GA~DYLl 134 (637)
||+.+..
T Consensus 169 Ga~gv~v 175 (212)
T 2v82_A 169 GCAGAGL 175 (212)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998764
No 231
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=34.60 E-value=27 Score=35.98 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=41.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
.+-++.+||-++...+.|++.+....-.-+...++.+++..+......+|||++|=
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 34689999999999999988886633223356788888876654333589999994
No 232
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=34.20 E-value=3e+02 Score=26.45 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=48.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy--~V~-~asng~EALelLre~---~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
+|.+.+|..||-++...+..++.+...+. .|. ...++.+.+..+... ...||+|++|.... +-..+++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHH
Confidence 45567999999999999999998887664 343 567777776655321 23599999997532 344555555
No 233
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=33.67 E-value=93 Score=33.35 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmD-GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+.++.+.+.. +|+|++|....... -.++++++++..++|||+= .-.+.+.+..+.+.||+....
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 45555555554 89999997654332 2678888876557887752 235678899999999988776
No 234
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=33.66 E-value=90 Score=30.92 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC------CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006649 67 AVALDILRERKGCFDVVLSDVHM------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~M------PdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~e 140 (637)
++..+++.. .|++|+-... ++.-|..+++.+. ..+|||. |... ...+.+..| .+++..|-+.+
T Consensus 264 ~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~G~PvI~-~~~~---~~~e~i~~~-~g~~~~~~d~~ 332 (394)
T 3okp_A 264 QDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--CGVPVIA-GTSG---GAPETVTPA-TGLVVEGSDVD 332 (394)
T ss_dssp HHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--TTCCEEE-CSST---TGGGGCCTT-TEEECCTTCHH
T ss_pred HHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--cCCCEEE-eCCC---ChHHHHhcC-CceEeCCCCHH
Confidence 555555543 4777774433 1334667777764 4678776 3322 233445667 89999999999
Q ss_pred HHHHHHHHHHH
Q 006649 141 ELKNIWQHVVR 151 (637)
Q Consensus 141 EL~~~Lq~Vlr 151 (637)
+|.+++.+++.
T Consensus 333 ~l~~~i~~l~~ 343 (394)
T 3okp_A 333 KLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 235
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=33.63 E-value=1.3e+02 Score=29.80 Aligned_cols=90 Identities=8% Similarity=0.003 Sum_probs=55.9
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC
Q 006649 51 QMLRRCL-YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (637)
Q Consensus 51 ~lL~~~g-y~V~~asng~EALelLre~-~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~G 128 (637)
+.|...+ .-|....+.++++++.+.. ....++|=+.++ .-++++.++++++...-.+|-...--+.+.+..|++.|
T Consensus 29 ~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG 106 (232)
T 4e38_A 29 NQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFR--SDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG 106 (232)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC
Confidence 3344333 4556677777777766532 123665555554 45689999999764322455554556789999999999
Q ss_pred CCeEEeCCCCHHHHH
Q 006649 129 ACDYLIKPIREEELK 143 (637)
Q Consensus 129 A~DYLlKPis~eEL~ 143 (637)
|+ |+.-|-...++.
T Consensus 107 A~-fIvsP~~~~~vi 120 (232)
T 4e38_A 107 AT-FVVSPGFNPNTV 120 (232)
T ss_dssp CS-EEECSSCCHHHH
T ss_pred CC-EEEeCCCCHHHH
Confidence 96 555565444443
No 236
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.61 E-value=1.3e+02 Score=27.75 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006649 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 28 ~~fp~girVLIVDDD~~~re~Lk~lL~~~gy~--V-~~asng~EALelLre~~--~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
..+|.+.+|..+|-++...+..++.+...+.. + ....++.+.+..+.... ..+|+|++|...+ +-.++++.+
T Consensus 84 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~--~~~~~l~~~ 160 (225)
T 3tr6_A 84 LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA--NTDLYYEES 160 (225)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH--HHHHHHHHH
Confidence 34565789999999999999999998876532 4 35667777766554310 3499999887422 233445554
No 237
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=33.20 E-value=57 Score=31.18 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=46.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~---V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
+|.+-+|.-||-++...+..++.+...+.. +. ...++.+.+..+. ...||+|++|...+. -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHH
Confidence 455679999999999999999999886653 54 4556666544332 234999999975433 33455554
No 238
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=33.08 E-value=53 Score=31.89 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+.+++.++..+ ||+| .+ ||+.- -++++++++..++|||.=-.-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i--Ei-LPGi~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--EL-LPGII-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--EE-ECTTC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--EE-CCchh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 35777887766 9977 33 57754 3788888877789988766678899999999999986543
No 239
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=33.04 E-value=48 Score=31.12 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE--EeccCCHHHHHHHHHcCCCeEEeCCCCH
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir~~-~~IPVII--LSa~~d~e~a~kAl~~GA~DYLlKPis~ 139 (637)
+.+++++.++......|+| .+.+|- ..|+++++.+|+. +++||.+ ++.+.....+.++.+.||+..++--...
T Consensus 11 ~~~~~~~~~~~~~~~~dii--e~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDII--EVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEE--EECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEE--EeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 3445555554332224532 222243 3578889999865 5788753 3333333348899999998877754433
Q ss_pred -HHHHHHHHHH
Q 006649 140 -EELKNIWQHV 149 (637)
Q Consensus 140 -eEL~~~Lq~V 149 (637)
+.+...++.+
T Consensus 89 ~~~~~~~~~~~ 99 (211)
T 3f4w_A 89 VLTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 4455555443
No 240
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=32.30 E-value=9.6 Score=43.46 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.7
Q ss_pred eecCCcccc
Q 006649 597 LDNNANKVK 605 (637)
Q Consensus 597 ~~~~~~~~~ 605 (637)
++.++|+..
T Consensus 275 L~Ls~N~l~ 283 (727)
T 4b8c_D 275 LDLSHNRLT 283 (727)
T ss_dssp EECTTSCCS
T ss_pred EeCcCCcCC
Confidence 334444443
No 241
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=31.91 E-value=3.2e+02 Score=28.42 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=70.8
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHH
Q 006649 34 LRVLVVDD--DI------------TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (637)
Q Consensus 34 irVLIVDD--D~------------~~re~Lk~lL~~~gy--~V~~as--ng~EALelLre~~~~pDLVIlDI~MPdmDGl 95 (637)
.+++|+.+ .+ ...+.+++++...+. .|.... +.++..+.+.......|++++-..- +.-|+
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~-Eg~~~ 373 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFY-EPFGL 373 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSC-BCCCS
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECccc-CCCCc
Confidence 57888877 21 126777777776543 244433 3466666666421002888874332 33356
Q ss_pred HHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 96 ELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
-+++.+. ..+|||... .....+.+..|..+++..|-+.++|.+++.+++.
T Consensus 374 ~~lEAma--~G~PvI~s~----~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 374 APVEAMA--SGLPAVVTR----NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHHHH--TTCCEEEES----SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHHHHH--cCCCEEEec----CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 6777664 467887532 2345566778888999999999999999988764
No 242
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.63 E-value=69 Score=32.05 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC----CCC-CHHHHHHHHhccC-CCcEEE-EeccCCHHHHHHHHHcCCCeEEeCCC
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHM----PDM-DGFKLLEHIGLEM-DLPVIM-MSADGRVSAVMRGIRHGACDYLIKPI 137 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~M----Pdm-DGlELLe~Ir~~~-~IPVII-LSa~~d~e~a~kAl~~GA~DYLlKPi 137 (637)
+-.+.++.+.+.. .|.+=+|++- |.. -|.++++.||+.. +.|+.+ |-..+-..++..+.+.||+....-..
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 4567777777643 6666666632 333 3889999998654 777654 44444556888899999987766655
Q ss_pred CHHHHHHHHHHH
Q 006649 138 REEELKNIWQHV 149 (637)
Q Consensus 138 s~eEL~~~Lq~V 149 (637)
..+++.+.++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 445666666665
No 243
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=31.43 E-value=25 Score=33.07 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=33.3
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006649 34 LR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (637)
Q Consensus 34 ir-VLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIl 85 (637)
|| |+|||........+.+.|++.+..+..+...+..++.+.... +|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEE
Confidence 46 999997766666788888888888776665422233333333 787777
No 244
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=31.06 E-value=3.3e+02 Score=27.91 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=44.0
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCcEEEEeccCCHHHHHHHHHcCCCeE
Q 006649 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 60 V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~-Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DY 132 (637)
..++.+.+|+.+.++.. .|+|.+|-.-| +.+++ ++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 202 eVEv~tl~ea~eAl~aG---aD~I~LDn~~~-----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 202 EVEVTNLDELNQAIAAK---ADIVMLDNFSG-----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp EEEESSHHHHHHHHHTT---CSEEEEESCCH-----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEEcCCCH-----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 34789999999988753 89999997433 22332 22222223566788778888888888888644
No 245
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=31.04 E-value=1.9e+02 Score=27.72 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred HHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC----CC-CCHHHHHHHH---hccCCCcEEEEeccCCHHH
Q 006649 51 QMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----PD-MDGFKLLEHI---GLEMDLPVIMMSADGRVSA 120 (637)
Q Consensus 51 ~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIlDI~M----Pd-mDGlELLe~I---r~~~~IPVIILSa~~d~e~ 120 (637)
..|+..|+.+. -+..+...+..+.... ||.|=+|-.+ .. .....+++.+ ....++.| +..+-.+.+.
T Consensus 146 ~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~v-iaeGVEt~~~ 222 (259)
T 3s83_A 146 KTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV-VAEGVENAEM 222 (259)
T ss_dssp HHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEE-EECCCCSHHH
T ss_pred HHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeE-EEEeCCCHHH
Confidence 34555587765 4566677888888776 9999999532 12 1233345544 23345654 4566777888
Q ss_pred HHHHHHcCCCe----EEeCCCCHHHHHHHHHH
Q 006649 121 VMRGIRHGACD----YLIKPIREEELKNIWQH 148 (637)
Q Consensus 121 a~kAl~~GA~D----YLlKPis~eEL~~~Lq~ 148 (637)
...+.+.|++. |+.||...+++...+++
T Consensus 223 ~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 223 AHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 88888889863 57899999999776543
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=30.97 E-value=78 Score=34.01 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=30.0
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEeC
Q 006649 33 GLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 33 girVLIVDDD~---~~re~Lk~lL~~~gy~V~~as---ng~----EALelLre~~~~pDLVIlDI 87 (637)
|.||++||-|+ ...+.+...-...+..+..+. +.. ++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 78999999885 333333333333355554432 222 334444433 389999998
No 247
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=30.96 E-value=1e+02 Score=28.87 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=43.0
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHc--CCCceEEEEeCCCC
Q 006649 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRER--KGCFDVVLSDVHMP 90 (637)
Q Consensus 29 ~fp~girVLIVDDD~~~re~Lk~lL~~~gy--~V-~~asng~EALelLre~--~~~pDLVIlDI~MP 90 (637)
.++.+.+|.-||-++...+..++.+...+. .| ....++.+.+..+... ...+|+|++|....
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 79 LLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred hCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 345567999999999999999998877653 24 3566776665544320 03499999997443
No 248
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=30.60 E-value=99 Score=30.30 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
.+++++++++..++||++-.+-.+.+.+.+++..||+.++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556788887666899999888888999999999999998753
No 249
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=30.56 E-value=1.6e+02 Score=27.89 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006649 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 29 ~fp~girVLIVDDD~~~re~Lk~lL~~~gy--~V-~~asng~EALelLre~~--~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
.+|.+.+|..+|-++...+..++.+...+. .+ ....++.+.+..+.... ..+|+|++|... .+-.++++.+
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 168 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIG 168 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHH
Confidence 345567999999999999998888876543 23 35677777666554321 359999999642 2233445554
No 250
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=30.41 E-value=2.7e+02 Score=28.76 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=53.9
Q ss_pred EEEEeCCHHHHHHHHHHHH----hC--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 36 VLVVDDDITCLRILEQMLR----RC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 36 VLIVDDD~~~re~Lk~lL~----~~--gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
|||=|.+....-.+...++ .. -....++.+.+|+.+.++.. .|+|.+|-.-| -++-+.++....-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~aG---aDiImLDn~s~----~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSNN---VDMILLDNMSI----SEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHTT---CSEEEEESCCH----HHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHcC---CCEEEECCCCH----HHHHHHHHhhcCceE
Confidence 5665655443322333332 21 12345789999999998753 89999996433 222222322222345
Q ss_pred EEEeccCCHHHHHHHHHcCCCeE
Q 006649 110 IMMSADGRVSAVMRGIRHGACDY 132 (637)
Q Consensus 110 IILSa~~d~e~a~kAl~~GA~DY 132 (637)
|..|+--+.+.+.+-.+.|++.+
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEE
Confidence 77888888888888888888543
No 251
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=30.38 E-value=1.6e+02 Score=27.26 Aligned_cols=71 Identities=23% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006649 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 29 ~fp~girVLIVDDD~~~re~Lk~lL~~~gy--~V~-~asng~EALelLre~~--~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
.+|.+.+|..+|-++...+..++.+...+. .+. ...++.+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 445567999999999999999988887653 333 4567777665554311 24999999864 23334455554
No 252
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=30.29 E-value=2.6e+02 Score=28.21 Aligned_cols=85 Identities=13% Similarity=0.061 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHh-cc-CCCcEEEEeccCCHH
Q 006649 46 LRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIG-LE-MDLPVIMMSADGRVS 119 (637)
Q Consensus 46 re~Lk~lL~~~gy~V-~~asng~EALelLre~~~~pDLVIlDI~M---PdmDGlELLe~Ir-~~-~~IPVIILSa~~d~e 119 (637)
.+.+.......+..+ ..+.+.+|+...+.. .+|+|=+.-+- -..| ++...++. .. .++++|.-++-.+.+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 334444445557664 478888887665532 38888665321 1222 44455553 22 368899999999999
Q ss_pred HHHHHHHcCCCeEEe
Q 006649 120 AVMRGIRHGACDYLI 134 (637)
Q Consensus 120 ~a~kAl~~GA~DYLl 134 (637)
.+.++.++||+.+|+
T Consensus 234 dv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999986
No 253
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=30.14 E-value=3.2e+02 Score=29.30 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=61.7
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCC
Q 006649 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD 93 (637)
Q Consensus 32 ~girVLIVDD----D~~~re~Lk~lL~~~-gy~V--~~asng~EALelLre~~~~pDLVIlDI~MP-----------dmD 93 (637)
.|..+++++- .....+.++.+-+.. +..| ..+.+.++|..+.+ . ..|.|.+...-. +..
T Consensus 248 aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~-~--G~d~I~v~~~~G~~~~~~~~~~~g~p 324 (494)
T 1vrd_A 248 AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIK-A--GADAVKVGVGPGSICTTRVVAGVGVP 324 (494)
T ss_dssp TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH-T--TCSEEEECSSCSTTCHHHHHHCCCCC
T ss_pred hCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH-c--CCCEEEEcCCCCccccccccCCCCcc
Confidence 3455566532 234555666665554 3443 35677777765554 2 389888744211 122
Q ss_pred HHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 94 GlELLe~Ir---~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.++++..+. ...++|||.-.+-.+...+.+++..||+...+
T Consensus 325 ~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 325 QLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 344444443 23579999888888999999999999987654
No 254
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=29.71 E-value=2e+02 Score=29.57 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=56.5
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEeccCCH-------------HHHHHHHHc
Q 006649 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRV-------------SAVMRGIRH 127 (637)
Q Consensus 62 ~asng~EALelLre~~~~pDLVIlDI~MPdmD-GlELLe~Ir~~~~IPVIILSa~~d~-------------e~a~kAl~~ 127 (637)
.+.+.+.+....+...+.+.|. .++..++.+ ++.+++.+++..++||.+|.-.... +.+..+.++
T Consensus 45 c~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~ 123 (287)
T 3iwp_A 45 CVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLY 123 (287)
T ss_dssp EESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHc
Confidence 5778888888877654333333 223344443 7888999887778998777543332 467788899
Q ss_pred CCCeEEeCC------CCHHHHHHHHHH
Q 006649 128 GACDYLIKP------IREEELKNIWQH 148 (637)
Q Consensus 128 GA~DYLlKP------is~eEL~~~Lq~ 148 (637)
||+++..=- ++.+.++..+..
T Consensus 124 GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 124 GADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp TCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred CCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 999886652 456666666554
No 255
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=29.63 E-value=16 Score=41.67 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=2.0
Q ss_pred CCCCCCcc
Q 006649 419 GLNPQNGN 426 (637)
Q Consensus 419 ~~~~~~~~ 426 (637)
.++.+|+|
T Consensus 22 ~~~~~~~~ 29 (727)
T 4b8c_D 22 NINVNASN 29 (727)
T ss_dssp ---CCSSC
T ss_pred ccccccCC
Confidence 33334443
No 256
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=29.53 E-value=66 Score=32.62 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=48.3
Q ss_pred CccEEEEEeC-----CHHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006649 32 AGLRVLVVDD-----DITCLRILEQMLRRCL-YNVTTCSQAA-----VALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (637)
Q Consensus 32 ~girVLIVDD-----D~~~re~Lk~lL~~~g-y~V~~asng~-----EALelLre~~~~pDLVIlDI~MPdmDGlELLe~ 100 (637)
..+||||+.. -+.....|+.+|+..+ +.|....+.. +.+. ..-..+|+||++..+...+-- ..+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~-~~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEE-TNRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHH-HHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHH-HHHH
Confidence 3589999975 2566788999999887 9998876531 2221 112349999998866554322 2222
Q ss_pred Hh--ccCCCcEEEEe
Q 006649 101 IG--LEMDLPVIMMS 113 (637)
Q Consensus 101 Ir--~~~~IPVIILS 113 (637)
|. -.....+|.+=
T Consensus 79 l~~yV~~Ggglv~~H 93 (281)
T 4e5v_A 79 FLEYVQNGGGVVIYH 93 (281)
T ss_dssp HHHHHHTTCEEEEEG
T ss_pred HHHHHHcCCCEEEEe
Confidence 21 12356777764
No 257
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=29.45 E-value=1.6e+02 Score=29.09 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
.++++++++..++||++=.+-.+.+.+.+++..||+..+.=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57888888766889877666677899999999999998764
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.43 E-value=70 Score=32.34 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=31.3
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC
Q 006649 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (637)
Q Consensus 32 ~girVLIVDDD~~---~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmD 93 (637)
.|.+|+++|.|+. ..+.+....+..+..+....+..+.-..+... ..+|+||+| .++.+
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 4678999988762 22333333333343333334444433333322 349999999 45544
No 259
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=29.10 E-value=80 Score=27.15 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=44.7
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 006649 31 PAGLRVLVVDDD----ITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE 104 (637)
Q Consensus 31 p~girVLIVDDD----~~~re~Lk~lL~~~gy~--V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~ 104 (637)
|+.||||+|=+. ....+.|++.+...+++ +..+ +..++-+.+ ..+|+||+-..+... ++-++..-..
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~-~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~ 74 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAI-AETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKP 74 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEE-CSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEe-cHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhcc
Confidence 445788777432 26777888888877764 4333 333333322 238999998766543 3333332223
Q ss_pred CCCcEEEEec
Q 006649 105 MDLPVIMMSA 114 (637)
Q Consensus 105 ~~IPVIILSa 114 (637)
.++||+.+..
T Consensus 75 ~~~pv~~I~~ 84 (109)
T 2l2q_A 75 KGIPIEIINT 84 (109)
T ss_dssp HTCCEEECCH
T ss_pred cCCCEEEECh
Confidence 4789988764
No 260
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=28.99 E-value=33 Score=27.31 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
.+|.++...-|+|.+++|..+|.+ .++++++.
T Consensus 13 ~~ik~~R~~~gltq~elA~~~gis-~~~is~~E 44 (78)
T 3qq6_A 13 QRIKQYRKEKGYSLSELAEKAGVA-KSYLSSIE 44 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 344445555789999999999874 44444443
No 261
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=28.51 E-value=87 Score=32.35 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=43.9
Q ss_pred HHHHHHHHhccCCCcEEEE--eccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMM--SADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIIL--Sa~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~Lq~Vlrk 152 (637)
.+++++++++..++|||++ ..-.+.+.+.++++.|+++.++ +--++....+.+..++..
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 3788888877788999877 3345788999999999999754 444577777777666543
No 262
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=28.11 E-value=1.6e+02 Score=25.25 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=44.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng-~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
|.+|.++|.++...+.+.. .++.+....-. .+.++.+ .....|+||+-+. .+..-..++..++......||.
T Consensus 29 g~~V~~id~~~~~~~~~~~----~~~~~~~gd~~~~~~l~~~--~~~~~d~vi~~~~-~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLED----EGFDAVIADPTDESFYRSL--DLEGVSAVLITGS-DDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp TCCEEEEESCHHHHHHHHH----TTCEEEECCTTCHHHHHHS--CCTTCSEEEECCS-CHHHHHHHHHHHHHHCCCCEEE
T ss_pred CCeEEEEECCHHHHHHHHH----CCCcEEECCCCCHHHHHhC--CcccCCEEEEecC-CHHHHHHHHHHHHHhCCceEEE
Confidence 5678888888765544432 34544332211 2233322 1224788887543 1111233344444333445555
Q ss_pred EeccCCHHHHHHHHHcCCCeEE
Q 006649 112 MSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYL 133 (637)
.... .+......+.|++..+
T Consensus 102 ~~~~--~~~~~~l~~~G~~~vi 121 (141)
T 3llv_A 102 RVSS--PKKKEEFEEAGANLVV 121 (141)
T ss_dssp EESC--GGGHHHHHHTTCSEEE
T ss_pred EEcC--hhHHHHHHHcCCCEEE
Confidence 4433 3344556678875433
No 263
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=28.07 E-value=1.8e+02 Score=25.06 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=64.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC-c
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL-P 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asn--g~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I-P 108 (637)
..++++|+.+.+. .+.++.++...+..+.. .. .++..+.+.. .|++++-.. .+.-|+.+++.+. ..+ |
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~G~vP 101 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS--VGIVP 101 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH--TTCCE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh--cCCCc
Confidence 3578889987543 46677777766655544 32 3455555432 688887544 3344677777764 455 8
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
||..+...... +.+..+ .++..|-+.++|...+.+++.
T Consensus 102 vi~~~~~~~~~---~~~~~~--~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 102 VIANSPLSATR---QFALDE--RSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EEECCTTCGGG---GGCSSG--GGEECTTCHHHHHHHHHHHHH
T ss_pred EEeeCCCCchh---hhccCC--ceEEcCCCHHHHHHHHHHHHh
Confidence 87633222221 122233 348889999999999998875
No 264
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=27.88 E-value=1e+02 Score=31.72 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHH-HHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRG-IRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 95 lELLe~Ir~~~~IPVIILSa~~d~e~a~kA-l~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
.-+++.+. ..+|||.-+...+...+.+. ...| ++..+-+.++|.+++.+++..
T Consensus 293 ~~~lEAmA--~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 293 HNLLEPTC--WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp CCCHHHHT--TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred cCHHHHHH--hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 33455442 46888852222333333332 3444 566677899999999988753
No 265
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.84 E-value=76 Score=30.23 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=47.2
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcCCC
Q 006649 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGAC 130 (637)
Q Consensus 61 ~~asng~EALelLre~~~~pDLVIlDI~MPd--------mDGlELLe~Ir~~--~~IPVIILSa~~d~e~a~kAl~~GA~ 130 (637)
..+.+.+|+.... . ..|.|.++--.|. .-|++.++.++.. .++|||.+-+-. .+.+.++++.||.
T Consensus 93 ~s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EEECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred EecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 3677888876653 2 3799987654432 1267888888654 589998876655 6678889999998
Q ss_pred eEE
Q 006649 131 DYL 133 (637)
Q Consensus 131 DYL 133 (637)
+.-
T Consensus 168 gVa 170 (210)
T 3ceu_A 168 GAV 170 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 266
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.64 E-value=38 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 6 ~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~ 38 (71)
T 1zug_A 6 ERLKKRRIALKMTQTELATKAGVK-QQSIQLIEA 38 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHHc
Confidence 345566677899999999999975 455555543
No 267
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=27.52 E-value=87 Score=30.66 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=42.9
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIW 146 (637)
Q Consensus 80 pDLVIlDI~MPdmDG-------lELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl-----KPis~eEL~~~L 146 (637)
.|.|++.-.-|+.+| ++-++++|+. .+.+ |.+.+--+.+.+.++.+.||+-++. +.-++.+-.+.+
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l 213 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD-IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLL 213 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHH
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCC-EEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 788888766777665 3445556543 3455 4455555678889999999998654 433555444444
Q ss_pred HHH
Q 006649 147 QHV 149 (637)
Q Consensus 147 q~V 149 (637)
+..
T Consensus 214 ~~~ 216 (228)
T 3ovp_A 214 RNV 216 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 268
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=27.47 E-value=35 Score=28.58 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
++|.+++..-|+|.+++|..+|.+. ++++++.
T Consensus 27 ~rLk~lR~~~glTq~eLA~~~GiS~-~tis~iE 58 (88)
T 3t76_A 27 NKLWKLLIDRDMKKGELREAVGVSK-STFAKLG 58 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCH-HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHH
Confidence 6677888889999999999999754 4444443
No 269
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=27.22 E-value=39 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 4 ~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~ 36 (69)
T 1r69_A 4 SRVKSKRIQLGLNQAELAQKVGTT-QQSIEQLEN 36 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 345566777899999999999975 455555543
No 270
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=27.13 E-value=47 Score=26.63 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 21 ~~l~~~r~~~glsq~elA~~~gis-~~~is~~e~ 53 (83)
T 2a6c_A 21 IVLQEHLRNSGLTQFKAAELLGVT-QPRVSDLMR 53 (83)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 345566777899999999999875 344444443
No 271
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=27.06 E-value=5.1e+02 Score=26.31 Aligned_cols=87 Identities=18% Similarity=0.038 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCCCeEE--EE---CCHHHHHHHHHHcCCCceEEEEeCC---------------------CCCCCHHHHH
Q 006649 45 CLRILEQMLRRCLYNVT--TC---SQAAVALDILRERKGCFDVVLSDVH---------------------MPDMDGFKLL 98 (637)
Q Consensus 45 ~re~Lk~lL~~~gy~V~--~a---sng~EALelLre~~~~pDLVIlDI~---------------------MPdmDGlELL 98 (637)
+.+.++.+-+.....|. .+ .+.++|..+.+. . .|.|++.-+ ..+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~-G--ad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA-G--AAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH-T--CSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc-C--CCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 34555555544444433 23 455666555443 3 787777421 1234567777
Q ss_pred HHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 99 EHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 99 e~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..++.. .++|||.-.+-.+.+.+.+++..||+...+
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 777543 479999999999999999999999998755
No 272
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.06 E-value=64 Score=24.46 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhh
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQ 274 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~q 274 (637)
+.|+.+.-..|++..|||..+|.+...
T Consensus 21 r~il~l~~~~g~s~~eIA~~lgis~~t 47 (70)
T 2o8x_A 21 REALLLTQLLGLSYADAAAVCGCPVGT 47 (70)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 456666557899999999999997544
No 273
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=27.03 E-value=36 Score=34.78 Aligned_cols=93 Identities=23% Similarity=0.293 Sum_probs=59.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-CcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-LPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~-IPVII 111 (637)
.|||.|+-....-.+.+.+.|+..++++.......+.+ ..+|+||+ -+.||- +++..+...+ +||+-
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEE
Confidence 48899984321116778888888898887654432222 12798887 255773 3444443222 89887
Q ss_pred EeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 112 LSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
+.. |-.+||. +++++++..+++++++
T Consensus 97 IN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 97 INT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred ECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 753 5667777 5778888888888876
No 274
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=26.97 E-value=4.6e+02 Score=26.27 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=62.7
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCC--CeEEEEC-----CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 33 GLRVLVVDDD----ITCLRILEQMLRRCL--YNVTTCS-----QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 33 girVLIVDDD----~~~re~Lk~lL~~~g--y~V~~as-----ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
.++++|+.+. +...+.++.+.+..+ -.|.... +.++..+.+.. .|++++--.. +.-|.-+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 4677777665 334445555554432 2344332 12344444443 4777664332 33356666766
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 102 r~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
. ..+|||.. . .....+.+..|..+++.. +.++|.+++.+++.
T Consensus 337 a--~G~PvI~~-~---~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGR-A---VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEE-S---CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEc-c---CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 4 46787753 2 234556677788899986 99999999988765
No 275
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=26.91 E-value=5.2e+02 Score=26.33 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--C------------HHHHHHHHhc
Q 006649 41 DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM--D------------GFKLLEHIGL 103 (637)
Q Consensus 41 DD~~~re~Lk~lL~~~-gy~V~--~asng~EALelLre~~~~pDLVIlDI~MPdm--D------------GlELLe~Ir~ 103 (637)
+.....+.++.+-+.. +..|. .+.+.++|..+++.. .|.|++-.+ ++. + -++++.+++.
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 4556667777766665 33332 366778887776543 788887432 221 1 3667777765
Q ss_pred cCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 104 ~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
..++|||.-.+-.+...+.+|+.+||+...+
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 5689999988888999999999999987543
No 276
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=26.52 E-value=3e+02 Score=26.23 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=47.6
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 28 ~~fp~girVLIVDDD~~~re~Lk~lL~~~gy~--V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
..+|.+.+|..||-++...+..++.+...+.. |. ...++.+.+..+. ....+|+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCchH--HHHHHHHHH
Confidence 34565679999999999999999998876542 43 5667766554332 112599999987432 234455555
No 277
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.29 E-value=80 Score=26.30 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccch--hhHHHHHHHHHhCCCC
Q 006649 248 KRILELMNVPGLTRENVASHLQEIN--LQKFRLYLKRLNGVSQ 288 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d--~qYFrk~FKk~~G~T~ 288 (637)
+.|+.|+ ..|++..|||..+|.+- .++..+..++..++..
T Consensus 33 ~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 33 RTLLGLL-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5577776 89999999999999963 3333333334444443
No 278
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=26.22 E-value=3.2e+02 Score=30.22 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCCC-C--HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHH-cCCCeEEe------C
Q 006649 67 AVALDILRERKGCFD-VVLSDVHMPDM-D--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACDYLI------K 135 (637)
Q Consensus 67 ~EALelLre~~~~pD-LVIlDI~MPdm-D--GlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~-~GA~DYLl------K 135 (637)
.+..+.+.+.- .+ ++++|+.-.++ . -+++++++++...+|||.-.+-.+.+.+.++++ .|+++.+. .
T Consensus 455 ~e~a~~~~~~G--a~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 455 WELTRACEALG--AGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHHHHHHHTT--CCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcC
Confidence 44444454432 55 45556643222 2 278889998767899998777888999999998 79988654 4
Q ss_pred CCCHHHHHHHH
Q 006649 136 PIREEELKNIW 146 (637)
Q Consensus 136 Pis~eEL~~~L 146 (637)
++...++++.+
T Consensus 533 ~~~~~e~~~~l 543 (555)
T 1jvn_A 533 EFTVNDVKEYL 543 (555)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 78888887654
No 279
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=26.11 E-value=14 Score=32.67 Aligned_cols=21 Identities=0% Similarity=-0.113 Sum_probs=19.1
Q ss_pred hhhHHHhHHHHHHHHHhcccc
Q 006649 224 VWSVELHQQFVSAVNQLGIDK 244 (637)
Q Consensus 224 vwk~Elg~tFveyLnqLRIeK 244 (637)
.||+++|.+|.+|++++||++
T Consensus 113 ~Fk~~~G~tp~~y~~~~Rl~~ 133 (133)
T 1u8b_A 113 LFKATTGMTPKAWQQAWRARR 133 (133)
T ss_dssp HHHHHTSSCHHHHHHHHHHC-
T ss_pred HHHHHHCcCHHHHHHHHHhcC
Confidence 799999999999999999874
No 280
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=26.08 E-value=83 Score=24.06 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccch
Q 006649 248 KRILELMNVPGLTRENVASHLQEIN 272 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d 272 (637)
+.|+.++ ..|++..|||+.+|.+.
T Consensus 17 ~~il~~~-~~g~s~~eIA~~l~is~ 40 (74)
T 1fse_A 17 REVFELL-VQDKTTKEIASELFISE 40 (74)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHTSCH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCCCH
Confidence 4566665 78999999999999864
No 281
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=25.92 E-value=70 Score=31.47 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=59.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCC---------CCCCCHHHHHHHHh
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVH---------MPDMDGFKLLEHIG 102 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~~a--sng~EALelLre~~~~pDLVIlDI~---------MPdmDGlELLe~Ir 102 (637)
++++|+.+-+ ..+.++++.+..+-.|... -+..+..+.+.. .|++++-.. ..+.-|+-+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 4566665532 2223333333222233322 233444555543 477776433 12334666777764
Q ss_pred ccCCCcEEEEeccCCHHHHHHHHHc--CCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 103 LEMDLPVIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 103 ~~~~IPVIILSa~~d~e~a~kAl~~--GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
..+|||..- . ....+.++. |..+++..| +.++|.+++.+++.
T Consensus 264 --~G~PvI~s~-~---~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 264 --SGTPVVGTG-N---GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp --TTCCEEECC-T---TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred --cCCCEEEcC-C---CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 467877532 2 235566777 888999999 99999998877643
No 282
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.90 E-value=57 Score=26.65 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
++|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 12 ~~lk~~r~~~glsq~~lA~~~gis-~~~is~~e 43 (94)
T 2kpj_A 12 ENLNSYIAKSEKTQLEIAKSIGVS-PQTFNTWC 43 (94)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 345566777899999999999975 34444443
No 283
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=25.83 E-value=4.8e+02 Score=25.56 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=50.6
Q ss_pred EEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCC
Q 006649 60 VTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (637)
Q Consensus 60 V~~asng~EALelLre~-~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis 138 (637)
|....+.++++.+.+.. ....++|=+.++-| ++++.++.|++...-.+|-.-.--+.+.+.++++.||. |+.-|..
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~--~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~ 94 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLRTE--AGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQ-FIVSPGL 94 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETTST--THHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCS-EEEESSC
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCCCc--cHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCC-EEEeCCC
Confidence 34455555555544431 12366555555444 68999999875543356666667789999999999996 5555654
Q ss_pred HHHHH
Q 006649 139 EEELK 143 (637)
Q Consensus 139 ~eEL~ 143 (637)
..++.
T Consensus 95 ~~evi 99 (217)
T 3lab_A 95 TPELI 99 (217)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 44443
No 284
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.72 E-value=1.4e+02 Score=28.77 Aligned_cols=57 Identities=7% Similarity=0.074 Sum_probs=35.4
Q ss_pred HHHHHHHHHcC--CCceEEEEeCC-----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 006649 67 AVALDILRERK--GCFDVVLSDVH-----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (637)
Q Consensus 67 ~EALelLre~~--~~pDLVIlDI~-----MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~k 123 (637)
..+|+.+++.- ..+||||+|=- +.-.+--++++.|...+.-.-||+|+..-.+...+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 34555555432 45999999943 23345556778786555555566777776655544
No 285
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=25.67 E-value=1.1e+02 Score=31.58 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCCeEEeCC
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~--~IPVIILSa~~d~e~a~kAl~~GA~DYLlKP 136 (637)
.+||.+|+.- .....++++++++.- .+||++=-+-.+.+.+.++++.||+..++--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999854 334568999997665 8999988888999999999999999887754
No 286
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=25.59 E-value=12 Score=40.93 Aligned_cols=100 Identities=10% Similarity=-0.095 Sum_probs=53.4
Q ss_pred ChHHHHHHHHcCCC--------CCCC-cccccccCC----------------CCCCCccEEEEE--eCCHHHHHHHHHHH
Q 006649 1 MAALQRIVQSSGGS--------GYGS-SRAADVAVP----------------DQFPAGLRVLVV--DDDITCLRILEQML 53 (637)
Q Consensus 1 la~~~~~v~~mgGs--------~~~~-~~~~~~~~~----------------~~fp~girVLIV--DDD~~~re~Lk~lL 53 (637)
|++++++++.|||. +.+. .+.+.+.++ ...+.|-+|.|. ++.......+..+|
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~~~~I~~~l 192 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYI 192 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchHHHHHHHHH
Confidence 57899999999994 2222 333332222 023456555443 44343334455555
Q ss_pred Hh-----CCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 54 RR-----CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 54 ~~-----~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
.. -++.+....++.+.+...+.....|+. .+..||.++|+++...++
T Consensus 193 ~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~ 244 (471)
T 1mu5_A 193 KRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKI 244 (471)
T ss_dssp HHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHH
T ss_pred HHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHH
Confidence 43 245666555544433332221112333 577899999998887764
No 287
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=25.48 E-value=37 Score=31.91 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHhcCCCC--CHHHHHhhhccchhhHHHHHHHHH
Q 006649 252 ELMNVPGL--TRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 252 eLL~v~gL--ti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
+++...|+ |..|+|.++|.+..+.++++++++
T Consensus 17 ~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l 50 (202)
T 1jhf_A 17 DHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (202)
T ss_dssp HHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHH
Confidence 44444577 999999999998677777777765
No 288
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=25.27 E-value=3.9e+02 Score=27.12 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=55.1
Q ss_pred EEEEeCCHHHHH----HHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 36 VLVVDDDITCLR----ILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 36 VLIVDDD~~~re----~Lk~lL~~~g--y~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
+||-|++....- .++..-+... .....+.+.+++.+.++.. .|+|.+|-.-|+ +-.+..+.++. .+++
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~aG---aD~I~LDn~~~~-~~~~~v~~l~~~~~~v- 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEK---PELILLDNFAVW-QTQTAVQRRDSRAPTV- 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGC---CSEEEEETCCHH-HHHHHHHHHHHHCTTC-
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHHhhccCCCe-
Confidence 577666543322 2333222222 2344788888988887643 799999984332 12233334432 2233
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEE
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYL 133 (637)
.|..|+--+.+.+.+-.+.|++.+.
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 5667777778888888899986554
No 289
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.19 E-value=91 Score=25.18 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccch
Q 006649 248 KRILELMNVPGLTRENVASHLQEIN 272 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d 272 (637)
+.|+.|+ ..|++..|||..+|.+-
T Consensus 27 ~~vl~l~-~~g~s~~eIA~~l~is~ 50 (82)
T 1je8_A 27 RDILKLI-AQGLPNKMIARRLDITE 50 (82)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHTSCH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCH
Confidence 4566765 78999999999999864
No 290
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=25.09 E-value=62 Score=32.20 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCC--CCCHHHHHHHHhccCCCcEEEEecc-CCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MP--dmDGlELLe~Ir~~~~IPVIILSa~-~d~e~a~kAl~~GA~DYLl 134 (637)
.++++.+.+.- .|+|.+-+.-. -.+-+++++++|+ .++|+|+++.+ +.. ..|++.+|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 291
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=25.03 E-value=3.3e+02 Score=28.47 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCH-HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmDG-lELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+.++.+.+.. +|+|.+|....+... ++.++++++..++|||+= .-.+.+.+.++.+.||+....
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 44455554443 899998876543322 467777766557887762 235678899999999987665
No 292
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=25.01 E-value=23 Score=27.48 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
++|.+++..-|+|..++|.++|.+ .++++++.+
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~gis-~~~is~~e~ 43 (73)
T 3omt_A 11 NRLKSVLAEKGKTNLWLTETLDKN-KTTVSKWCT 43 (73)
T ss_dssp BCHHHHHHHHTCCHHHHHHHTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 346677777899999999999974 344444443
No 293
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=24.99 E-value=71 Score=30.78 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-------HHHHHHHHhccC-CCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmD-------GlELLe~Ir~~~-~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+.++.+.......|.|+++-..|+.+ +++.++++++.. ++||++.-+-+. +.+.++++.||+.++.
T Consensus 126 ~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAGANCIVA 200 (228)
T ss_dssp GGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHHcCCCEEEE
Confidence 344554444100279999988777533 456666776544 788766555443 6777888889988754
No 294
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=24.92 E-value=4.8e+02 Score=26.98 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006649 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (637)
Q Consensus 105 ~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk 152 (637)
..+|+|++-...+.. +.++.| ..++..+ +.++|..++..++..
T Consensus 319 ~g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 319 MGVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp TTCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred hCCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 578988763333332 245677 5677766 999999999888753
No 295
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=24.83 E-value=5e+02 Score=25.41 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=58.2
Q ss_pred HHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHH
Q 006649 49 LEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (637)
Q Consensus 49 Lk~lL~~~gy--~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir--~~~~IPVIILSa~~d~e~a~kA 124 (637)
++..|..-.. .....-+..+.++.+... .+|.|++|..=...+--++...++ .....++++=+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 5555554222 222223344555555443 399999998544333223333333 2245677877777888889999
Q ss_pred HHcCCCeEE-eCCCCHHHHHHHHHH
Q 006649 125 IRHGACDYL-IKPIREEELKNIWQH 148 (637)
Q Consensus 125 l~~GA~DYL-lKPis~eEL~~~Lq~ 148 (637)
++.|++..+ .|--+.++++.+.+.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 999998743 344478888665543
No 296
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=24.70 E-value=1.8e+02 Score=27.63 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC---CC-CC-CCHHHHHHHHhccCCCcEEEEeccCCH-HHHHHHHHcCCCeEEeCCC-
Q 006649 65 QAAVALDILRERKGCFDVVLSDV---HM-PD-MDGFKLLEHIGLEMDLPVIMMSADGRV-SAVMRGIRHGACDYLIKPI- 137 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI---~M-Pd-mDGlELLe~Ir~~~~IPVIILSa~~d~-e~a~kAl~~GA~DYLlKPi- 137 (637)
+..+.++.+.+.. .|+|=+|+ .. |. ..|++++++|++..+.|+.+..-..+. +++..+.+.||+...+-..
T Consensus 24 ~~~~~i~~~~~~G--~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~ 101 (230)
T 1rpx_A 24 KLGEQVKAIEQAG--CDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred HHHHHHHHHHHCC--CCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecC
Confidence 3345555554432 45444442 11 22 247899999986545665443333343 4788899999987755444
Q ss_pred -CHHHHHHHHHHH
Q 006649 138 -REEELKNIWQHV 149 (637)
Q Consensus 138 -s~eEL~~~Lq~V 149 (637)
..+++...++.+
T Consensus 102 ~~~~~~~~~~~~~ 114 (230)
T 1rpx_A 102 SSTIHLHRTINQI 114 (230)
T ss_dssp TTCSCHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 334444444443
No 297
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.69 E-value=44 Score=27.61 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=26.0
Q ss_pred HHHHHHhcCC-----C--CCHHHHHhhhccchhhHHHHHHHHHh
Q 006649 248 KRILELMNVP-----G--LTRENVASHLQEINLQKFRLYLKRLN 284 (637)
Q Consensus 248 KkILeLL~v~-----g--Lti~EVAshVGy~d~qYFrk~FKk~~ 284 (637)
++||+++... | .|+.|||+++|++ ..--+++++.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS-~~TVrr~L~~Le 49 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLS-IYQVRLYLEQLH 49 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 3456655443 3 4699999999996 455888888883
No 298
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.63 E-value=46 Score=25.63 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 15 l~~~r~~~glsq~~lA~~~gis-~~~i~~~e 44 (77)
T 2b5a_A 15 LKKIRTQKGVSQEELADLAGLH-RTYISEVE 44 (77)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCC-HHHHHHHH
Confidence 3444555789999999999975 44444444
No 299
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=24.57 E-value=5.4e+02 Score=25.71 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=57.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCce-EEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFD-VVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~-~gy~V~-~asng~EALelLre~~~~pD-LVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
.+||.||--=..-...+..+... .++++. .+....+..+.+.+.- .++ -+..|+ -++++ .+++-+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-g~~~~~~~~~-------~~ll~----~~~~D~ 69 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-QLNATVYPND-------DSLLA----DENVDA 69 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-TCCCEEESSH-------HHHHH----CTTCCE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-CCCCeeeCCH-------HHHhc----CCCCCE
Confidence 36778887766555555555523 355554 3443333333333221 111 122221 12222 234444
Q ss_pred EEEec--cCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006649 110 IMMSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (637)
Q Consensus 110 IILSa--~~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vl 150 (637)
|++.. ..-.+.+.+|++.|..=++.||+ +.++..++++.+-
T Consensus 70 V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~ 114 (344)
T 3mz0_A 70 VLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEI 114 (344)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred EEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 44433 33467788999999888999996 6778877776553
No 300
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=24.56 E-value=53 Score=31.48 Aligned_cols=84 Identities=8% Similarity=-0.026 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEEEec-cCC-HHHHHHHHHcCCCeEEeCCCC
Q 006649 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIMMSA-DGR-VSAVMRGIRHGACDYLIKPIR 138 (637)
Q Consensus 64 sng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir~~-~~IPVIILSa-~~d-~e~a~kAl~~GA~DYLlKPis 138 (637)
.+.+++++.++... ..+-++++.+|- ..|.++++.||+. ++.|+++..- .+. ..++..+.+.||+....-...
T Consensus 16 ~~~~~~~~~~~~~~--~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~ 93 (218)
T 3jr2_A 16 TNLTDAVAVASNVA--SYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAA 93 (218)
T ss_dssp SSHHHHHHHHHHHG--GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS
T ss_pred CCHHHHHHHHHHhc--CCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC
Confidence 45556666665432 123345555542 2467888888765 4666654221 122 335677889999766665454
Q ss_pred HH-HHHHHHHHH
Q 006649 139 EE-ELKNIWQHV 149 (637)
Q Consensus 139 ~e-EL~~~Lq~V 149 (637)
.+ .+.++++.+
T Consensus 94 ~~~~~~~~~~~~ 105 (218)
T 3jr2_A 94 HIATIAACKKVA 105 (218)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 43 355555544
No 301
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=24.50 E-value=2.8e+02 Score=26.57 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=42.9
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 33 GLRVLVVD------DDITCLRILEQMLRRCLYNVTTC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 33 girVLIVD------DD~~~re~Lk~lL~~~gy~V~~a----sng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
+-||++|+ |.....+.+.+.++..|+++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 46889986 44456777888888888888776 366666666654 477665 6666666666654
No 302
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=24.47 E-value=3.6e+02 Score=23.63 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy--~V-~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~I 101 (637)
.+|..||-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999988888876543 23 35667766555443223459999998532233445566655
No 303
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=24.34 E-value=36 Score=25.39 Aligned_cols=32 Identities=6% Similarity=-0.028 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
++|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 8 ~~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e 39 (68)
T 2r1j_L 8 ERIRARRKKLKIRQAALGKMVGVS-NVAISQWE 39 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHH
Confidence 445566666799999999999976 34455544
No 304
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.27 E-value=1.6e+02 Score=31.27 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=55.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH--HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA--VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~--EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~-~~~IP 108 (637)
.|+.|++||.++...+.++ ..++.+. ..++. +.|+.+. -...|+||+-+.-+ ..-+.++..++. .++++
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi-~GDat~~~~L~~ag--i~~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVF-YGDATRMDLLESAG--AAKAEVLINAIDDP-QTNLQLTEMVKEHFPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCE-ESCTTCHHHHHHTT--TTTCSEEEECCSSH-HHHHHHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEE-EcCCCCHHHHHhcC--CCccCEEEECCCCh-HHHHHHHHHHHHhCCCCe
Confidence 3578999999987665554 3466553 33332 3444332 23479888866321 123344555553 46677
Q ss_pred EEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 109 VIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 109 VIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
||+.+. +.+.+....++||+..+.
T Consensus 98 Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 776653 456677778899987654
No 305
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.22 E-value=47 Score=25.24 Aligned_cols=31 Identities=23% Similarity=0.060 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
+|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 17 ~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e 47 (74)
T 1y7y_A 17 RLRELRTAKGLSQETLAFLSGLD-RSYVGGVE 47 (74)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 34455556789999999999975 34444443
No 306
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=24.20 E-value=5.6e+02 Score=25.82 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=61.7
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006649 33 GLRVLVVDDDITCL-RILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (637)
Q Consensus 33 girVLIVDDD~~~r-e~Lk~lL~~~gy~V~-~as-ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPV 109 (637)
.+||.||---..-. ..+..+....++++. .++ +.+.+.+..+... ...+ .|+ +.+-...++-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~-----------~~ll~~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY-----------PALLERDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH-----------HHHHTCTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH-----------HHHhcCCCCCE
Confidence 47999999877666 344444443366664 333 3444444444332 2322 332 22222244555
Q ss_pred EEEec--cCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006649 110 IMMSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (637)
Q Consensus 110 IILSa--~~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vl 150 (637)
|+++. ..-.+.+.+|++.|..=++.||+ +.++..++++.+-
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~ 137 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVAR 137 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 55543 33467788999999998999997 6788877776553
No 307
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=24.02 E-value=69 Score=25.81 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 16 ~~l~~~r~~~glsq~~lA~~~gis-~~~is~~e~ 48 (91)
T 1x57_A 16 KVIQQGRQSKGLTQKDLATKINEK-PQVIADYES 48 (91)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 344555667899999999999975 345555544
No 308
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=23.87 E-value=34 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=22.9
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
+|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e~ 36 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVS-RQTINGIEK 36 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 35566777899999999999975 444555443
No 309
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=23.86 E-value=5.5e+02 Score=25.61 Aligned_cols=45 Identities=7% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCcEEEEecc--CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006649 106 DLPVIMMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (637)
Q Consensus 106 ~IPVIILSa~--~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vl 150 (637)
++-+|+++.. .-.+.+.+|++.|..=++.||+ +.++..++++.+-
T Consensus 64 ~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~ 112 (344)
T 3ezy_A 64 NVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETK 112 (344)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4444444433 2356778899999888999995 6788877766553
No 310
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=23.74 E-value=3.2e+02 Score=25.58 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=46.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHc------------C-CCceEEEEeCCCCCCC
Q 006649 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER------------K-GCFDVVLSDVHMPDMD 93 (637)
Q Consensus 30 fp~girVLIVDDD~~~re~Lk~lL~~~gy~--V-~~asng~EALelLre~------------~-~~pDLVIlDI~MPdmD 93 (637)
+|.+.+|..||-++...+..++.+...+.. + ....++.+.+..+... . ..+|+|++|...+.
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~-- 159 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN-- 159 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--
Confidence 344569999999999999999988876542 3 3566777665544321 1 34999999964332
Q ss_pred HHHHHHHH
Q 006649 94 GFKLLEHI 101 (637)
Q Consensus 94 GlELLe~I 101 (637)
-.++++.+
T Consensus 160 ~~~~l~~~ 167 (239)
T 2hnk_A 160 YPNYYPLI 167 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 23445554
No 311
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=23.70 E-value=2.7e+02 Score=29.48 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=48.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCC
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~---V~-~asng~EALe-lLre~~~~pDLVIlDI~MPdmDGlELLe~I-r~~~~I 107 (637)
-+|..||-++...+.+++-++..+.. +. ...++.+.+. .+ ...||+|++|- ++.. .++++.+ +....-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGTP-VPFIESVALSMKRG 151 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSCC-HHHHHHHHHHEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcCH-HHHHHHHHHHhCCC
Confidence 47999999999999999999887652 43 4556655543 22 23499999997 3321 2355443 211222
Q ss_pred cEEEEeccC
Q 006649 108 PVIMMSADG 116 (637)
Q Consensus 108 PVIILSa~~ 116 (637)
-++++|..+
T Consensus 152 Gll~~t~t~ 160 (392)
T 3axs_A 152 GILSLTATD 160 (392)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecc
Confidence 367777633
No 312
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.68 E-value=3.6e+02 Score=23.38 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=47.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~--~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.|||.|+-| +....+ +.-.|.++..+.+.+++.+.+++. ...+.+|+++=++-+. --+.+++++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 478999999 433333 233477888888887776555431 1248899998776552 23455566545668877
Q ss_pred EEec
Q 006649 111 MMSA 114 (637)
Q Consensus 111 ILSa 114 (637)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6544
No 313
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=23.55 E-value=5.7e+02 Score=25.63 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=58.9
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHHh-CCCeEE-EECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006649 32 AGLRVLVVDDDI-TCLRILEQMLRR-CLYNVT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (637)
Q Consensus 32 ~girVLIVDDD~-~~re~Lk~lL~~-~gy~V~-~asng~EALe-lLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~I 107 (637)
..+||.||--=. .-...+..+... .++++. .+....+..+ ..+... ..-+..| --+++ . .+++
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-------~~~ll---~-~~~v 83 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-------YEELL---E-SGLV 83 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-------HHHHH---H-SSCC
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-------HHHHh---c-CCCC
Confidence 458999998763 333344443332 345553 4543333333 333322 1112222 12222 2 2445
Q ss_pred cEEEEec--cCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006649 108 PVIMMSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (637)
Q Consensus 108 PVIILSa--~~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~V 149 (637)
-+|+++. ..-.+.+.+|++.|..=|+.||+ +.++..++++.+
T Consensus 84 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 129 (340)
T 1zh8_A 84 DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELS 129 (340)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 5555443 33468889999999988999997 778887777665
No 314
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=23.36 E-value=3.8e+02 Score=28.28 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=44.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eE-EEECCHHHHHHHHHHcCCCceEEEEeCCC-CC------CCHHH
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCL---Y------NV-TTCSQAAVALDILRERKGCFDVVLSDVHM-PD------MDGFK 96 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~g---y------~V-~~asng~EALelLre~~~~pDLVIlDI~M-Pd------mDGlE 96 (637)
-+|.+||=|+...+..++.+.... + .+ ....++.+.++.+......||+||+|.-- |. .-..+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 589999999999999888875311 1 23 35778888777653223459999999854 42 23345
Q ss_pred HHHHH
Q 006649 97 LLEHI 101 (637)
Q Consensus 97 LLe~I 101 (637)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 315
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.27 E-value=1.1e+02 Score=23.76 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchh
Q 006649 248 KRILELMNVPGLTRENVASHLQEINL 273 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~ 273 (637)
+.|+.++ ..|++..|||..+|.+..
T Consensus 22 ~~vl~l~-~~g~s~~eIA~~l~is~~ 46 (79)
T 1x3u_A 22 RQVLSAV-VAGLPNKSIAYDLDISPR 46 (79)
T ss_dssp HHHHHHH-TTTCCHHHHHHHTTSCHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHH
Confidence 4577775 899999999999998643
No 316
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=23.14 E-value=1e+02 Score=30.64 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC------HHHHHHHHhccCCCcEEEEecc-CCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMD------GFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmD------GlELLe~Ir~~~~IPVIILSa~-~d~e~a~kAl~~GA~DYLl 134 (637)
.++++.+.+.- .|+|.+-+ .+ .+++++++|+ .++|||+++.. ... ..|++.||+
T Consensus 23 ~~~~~~l~~~G--aD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i-------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI-------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC-------CSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc-------cCCCCEEEE
No 317
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=23.06 E-value=54 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccch--hhHHHHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEIN--LQKFRLYLKRL 283 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d--~qYFrk~FKk~ 283 (637)
++|||+|..+..++++||..+|-+. .+|.-+++-|.
T Consensus 14 ~~ILE~Lk~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE 51 (165)
T 2vxz_A 14 RDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKE 51 (165)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCccHHHHHHHhCCcHHHHHHHHHHHHhc
Confidence 5799999999999999999999864 45555555554
No 318
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=22.97 E-value=80 Score=29.71 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH-------HHHHHHhccC-----CCcEEEEe
Q 006649 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-------KLLEHIGLEM-----DLPVIMMS 113 (637)
Q Consensus 46 re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGl-------ELLe~Ir~~~-----~IPVIILS 113 (637)
...+.+.+...+..+...-+.....+.++......|.|+++...|+.+|. +.++++++.. ++||++.-
T Consensus 98 ~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T 2fli_A 98 IHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDG 177 (220)
T ss_dssp HHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEEC
Q ss_pred ccCCHHHHHHHHHcCCCe-----EEeCCCCHHHHHHHHHHHH
Q 006649 114 ADGRVSAVMRGIRHGACD-----YLIKPIREEELKNIWQHVV 150 (637)
Q Consensus 114 a~~d~e~a~kAl~~GA~D-----YLlKPis~eEL~~~Lq~Vl 150 (637)
+-. .+.+.++++.||+. .|.+.-++.+-.+.+++.+
T Consensus 178 GI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~~ 218 (220)
T 2fli_A 178 GVD-NKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218 (220)
T ss_dssp SCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHh
No 319
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=22.91 E-value=49 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=20.5
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLY 279 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~ 279 (637)
+|.+++..-|+|..++|.++|.+. ++++++
T Consensus 15 ~lk~~R~~~glsq~~lA~~~gis~-~~i~~~ 44 (82)
T 3s8q_A 15 VIKKIRLEKGMTQEDLAYKSNLDR-TYISGI 44 (82)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCH-HHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCH-HHHHHH
Confidence 344455557899999999999743 444444
No 320
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=22.88 E-value=57 Score=32.85 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCCCcEEEEec------cCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 94 GFKLLEHIGLEMDLPVIMMSA------DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 94 GlELLe~Ir~~~~IPVIILSa------~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
-+++++++|.. +|+|+|+= +.-.....+|.+.|+++.|+--+.++|... +....+
T Consensus 78 ~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~ 138 (252)
T 3tha_A 78 VFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECE 138 (252)
T ss_dssp HHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHH
T ss_pred HHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHH
Confidence 35555555543 89999873 344556788999999999998888777444 333333
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.87 E-value=29 Score=35.33 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=32.2
Q ss_pred CccEEEEEeCC---HHHHHHHHHHHHhCCCeEEEE---CCHH----HHHHHHHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDD---ITCLRILEQMLRRCLYNVTTC---SQAA----VALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD---~~~re~Lk~lL~~~gy~V~~a---sng~----EALelLre~~~~pDLVIlDI 87 (637)
.+.+|+++|-| +...+.++.+....+..+... .+.. ++++.++.. .+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 46799999988 344444554444445555443 2333 344444433 499999998
No 322
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.76 E-value=48 Score=27.58 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHHhcC-C---CCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 248 KRILELMNV-P---GLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 248 KkILeLL~v-~---gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
.+||++|.. + .+|..|||..||-+. .-.++.++++
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr-~tV~~~L~~L 51 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPK-KEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCH-HHHHHHHHHH
Confidence 346655543 4 589999999999765 4566667776
No 323
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=22.70 E-value=77 Score=27.67 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 229 LHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 229 lg~tFveyLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
|...|-..+..+++.... -+|-.+.-+.|+|..|||..+|.+.. .-++.+++.
T Consensus 6 T~~eFe~~~~~l~~~~~~-~~~A~lyYv~g~tQ~eIA~~lGiSR~-~VsrlL~~A 58 (101)
T 2w7n_A 6 TESQFQEAIQGLEVGQQT-IEIARGVLVDGKPQATFATSLGLTRG-AVSQAVHRV 58 (101)
T ss_dssp CHHHHHHHHTTCCCCHHH-HHHHHHHHTTCCCHHHHHHHHTCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHccCChHHHH-HHHHHHHHHcCCCHHHHHHHHCCCHH-HHHHHHHHH
Confidence 556777788777777543 45557778999999999999996653 455555554
No 324
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=22.66 E-value=2e+02 Score=25.54 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=37.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
.+.+|.++..... ..+|...+..+..+.+..++++++.... .|.++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecH
Confidence 4678888777652 3345556788888999999999998765 99999974
No 325
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=22.61 E-value=18 Score=33.84 Aligned_cols=15 Identities=13% Similarity=0.459 Sum_probs=6.2
Q ss_pred CChhHHHHHHHHhcC
Q 006649 323 IPPQTLAALHAELLG 337 (637)
Q Consensus 323 ~~~~~~~~~~~~~~g 337 (637)
+|......+...++.
T Consensus 46 LPke~~k~iPk~y~~ 60 (150)
T 1qb3_A 46 LPKAMLKVIPSDYFN 60 (150)
T ss_dssp CCHHHHHTSCGGGBC
T ss_pred cCHHHHhhccccccc
Confidence 344444444333433
No 326
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=22.59 E-value=2.6e+02 Score=22.50 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=34.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~g-y~V~~asng~EALelLre~~~~pDLVIlDI~ 88 (637)
.+++|+|+-- -.+-..+...|...+ ++|..+....+.++.+... ....+..|+.
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~ 58 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAK 58 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTT
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCC
Confidence 3578999988 555555566666667 8887666555555555432 2666666664
No 327
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=22.47 E-value=2.9e+02 Score=27.91 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeC
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlK 135 (637)
+.++.++.+.+.. +|+|.+....| .++++.++.. .++|+... .+.+.+.++.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 3457777777655 99999887665 5778888653 67777532 45677888999999888773
No 328
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.44 E-value=3.3e+02 Score=25.65 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH---H---HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc
Q 006649 44 TCLRILEQMLRRCLYNVTTCSQA---A---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (637)
Q Consensus 44 ~~re~Lk~lL~~~gy~V~~asng---~---EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~ 115 (637)
.+..++++.+...+|.+..+... + +.++.+.... +|-||+--..+ -+.++.++. ..+|+|++...
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~----~~~~~~l~~-~~iPvV~i~~~ 94 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN----PQTVQEILH-QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC----HHHHHHHHT-TSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc----HHHHHHHHH-CCCCEEEEecc
Confidence 34455666677778988765432 2 3455555544 89888754332 456666643 58999988544
No 329
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=22.41 E-value=2.1e+02 Score=30.37 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=31.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEE-----------------ECCHHHHHHHHHHcCCCceEEEEe
Q 006649 29 QFPAGLRVLVVDDDITCLRILEQMLRRC-LYN-VTT-----------------CSQAAVALDILRERKGCFDVVLSD 86 (637)
Q Consensus 29 ~fp~girVLIVDDD~~~re~Lk~lL~~~-gy~-V~~-----------------asng~EALelLre~~~~pDLVIlD 86 (637)
.-|..|||||+...-... .|...+.+. +.. +.. ..+.+..++.+++.. +|+|+..
T Consensus 17 ~~p~~m~ilvlG~ggre~-ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~~--id~vv~g 90 (442)
T 3lp8_A 17 QGPGSMNVLVIGSGGREH-SMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEK--IELVVIG 90 (442)
T ss_dssp ---CCEEEEEEECSHHHH-HHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTT--CCEEEEC
T ss_pred CCCCCCEEEEECCChHHH-HHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHhC--CCEEEEC
Confidence 347789999999884433 344444333 222 221 124556667777665 9999974
No 330
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=22.34 E-value=1.1e+02 Score=32.98 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc---CCHHHHHHHHHcCCCeEE-eCCC---
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD---GRVSAVMRGIRHGACDYL-IKPI--- 137 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~---~d~e~a~kAl~~GA~DYL-lKPi--- 137 (637)
+..++++.+...-+.++|+.+.==++..| ++-.++|+....+||+ ... .+.....++++.|++++| +|+-
T Consensus 274 t~~eai~~~~~~l~~y~i~~iEdPl~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiG 350 (436)
T 2al1_A 274 TGPQLADLYHSLMKRYPIVSIEDPFAEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQIG 350 (436)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CHHHHHHHHHHHHHhCCcEEEECCCCCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhcC
Confidence 45777765443212378888877666655 5666677655667764 333 256788899999998875 6775
Q ss_pred CHHHHHHHHHH
Q 006649 138 REEELKNIWQH 148 (637)
Q Consensus 138 s~eEL~~~Lq~ 148 (637)
...|.+++...
T Consensus 351 Gitea~~ia~l 361 (436)
T 2al1_A 351 TLSESIKAAQD 361 (436)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 331
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=21.89 E-value=3.1e+02 Score=28.66 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=48.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCe-EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH
Q 006649 34 LRVLVVDDDITCLRILEQMLRRC---------------LYN-VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK 96 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~---------------gy~-V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlE 96 (637)
.+|..+|-++...+.+++-++.. +.. +. ...++.+.+... ...+|+|++|- |+ ...+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~~-~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--FG-SPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--SS-CCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--CC-CHHH
Confidence 47999999999999999988766 542 43 566776665432 23499999884 33 3345
Q ss_pred HHHHH-hccCCCcEEEEecc
Q 006649 97 LLEHI-GLEMDLPVIMMSAD 115 (637)
Q Consensus 97 LLe~I-r~~~~IPVIILSa~ 115 (637)
+++.. +....-.++.+|..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 55543 22222236667764
No 332
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=21.84 E-value=5e+02 Score=26.27 Aligned_cols=106 Identities=12% Similarity=0.211 Sum_probs=61.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHH-HHcCCCce-EEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006649 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDIL-RERKGCFD-VVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~-~gy~V~-~asng~EALelL-re~~~~pD-LVIlDI~MPdmDGlELLe~Ir~~~~IP 108 (637)
.+||.||--=..-...+..+... .++++. .+....+..+.+ +... ++ -+..| --++++ ..++-
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g--~~~~~~~~-------~~~ll~----~~~~D 89 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA--IEAKDYND-------YHDLIN----DKDVE 89 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT--CCCEEESS-------HHHHHH----CTTCC
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC--CCCeeeCC-------HHHHhc----CCCCC
Confidence 47999998877666666666533 466665 344333333333 3222 11 12222 122222 23444
Q ss_pred EEEEec--cCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006649 109 VIMMSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (637)
Q Consensus 109 VIILSa--~~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vlr 151 (637)
+|++.. ..-.+.+.+|++.|..=|+.||+ +.++..++++.+-+
T Consensus 90 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 90 VVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHH
Confidence 454433 34467788999999988999996 67888877776533
No 333
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.71 E-value=1.8e+02 Score=31.75 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 68 VALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 68 EALelLre~~~~pDLVIlDI~MPdmD-GlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
+..+.+.+.. +|+|.+|...+... -+++++++++. +++|||+ ..-.+.+.+..+.++||+....
T Consensus 234 ~~a~~l~~aG--~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 234 ERVKALVEAG--VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhcc--CceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 3344444433 89999999877643 45788888754 4788776 3345678899999999987765
No 334
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=21.57 E-value=92 Score=33.03 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=60.3
Q ss_pred EEEEEe--CCHHHHHH---HHHHHHhCCCeEEEECCHHHHHHHHH-------------------HcCCCceEEEEeCCCC
Q 006649 35 RVLVVD--DDITCLRI---LEQMLRRCLYNVTTCSQAAVALDILR-------------------ERKGCFDVVLSDVHMP 90 (637)
Q Consensus 35 rVLIVD--DD~~~re~---Lk~lL~~~gy~V~~asng~EALelLr-------------------e~~~~pDLVIlDI~MP 90 (637)
+|+||- +++...+. |.+.|...++.|..-....+.+.... +....+|+||+ -
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~----l 115 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC----L 115 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----E
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----E
Confidence 688884 44444444 44444455888865444433322211 01124688776 2
Q ss_pred CCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006649 91 DMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (637)
Q Consensus 91 dmDGlELLe~Ir--~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlrk~~~ 155 (637)
+.||- +++..+ ....+||+-+. .|-.+||. +++.+++..++++++++.+.
T Consensus 116 GGDGT-~L~aa~~~~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~~~ 167 (365)
T 3pfn_A 116 GGDGT-LLYASSLFQGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGNAA 167 (365)
T ss_dssp SSTTH-HHHHHHHCSSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSCCB
T ss_pred cChHH-HHHHHHHhccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCCCe
Confidence 55772 233333 23567887654 36778888 88889999999999877543
No 335
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=21.49 E-value=1.8e+02 Score=29.89 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=45.0
Q ss_pred ceEEEE-eCCCCCCCHH-HHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 80 FDVVLS-DVHMPDMDGF-KLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 80 pDLVIl-DI~MPdmDGl-ELLe~Ir~-~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
.|.|++ |-|.--..|+ +.++++|+ .+..+|.+ ..++.+.+.+|++.||+-..+..+++++++.+++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeV--Ev~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEV--EVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHCTTSCEEE--EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEE--EeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 355555 4443333333 34555553 35567666 345668899999999999999999999999888764
No 336
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=21.45 E-value=6e+02 Score=25.13 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=58.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVII 111 (637)
.+||.||--=..-...+..+....++++. .+....+..+.+.+... .. .. |--++++ .+++-+|+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~-~~--~~-------~~~~~l~----~~~~D~V~ 68 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYG-CE--VR-------TIDAIEA----AADIDAVV 68 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT-CE--EC-------CHHHHHH----CTTCCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhC-CC--cC-------CHHHHhc----CCCCCEEE
Confidence 46888888766555555554444466665 44433333333333211 22 21 2222322 23444555
Q ss_pred Eec--cCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006649 112 MSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (637)
Q Consensus 112 LSa--~~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~Vl 150 (637)
+.. ..-.+.+.+|++.|..=++.||+ +.++..++++.+-
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 111 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVS 111 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 443 33467788999999888999995 6788877766543
No 337
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=21.44 E-value=4.3e+02 Score=26.87 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=58.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHH-HHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006649 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAV-ALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (637)
Q Consensus 33 girVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~E-ALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVI 110 (637)
.+||.||---......+...+...++++. .+....+ +-+..++.. ..-+..|+ +.+-..+++-+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~~~-----------~~ll~~~~vD~V 92 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIATA-----------EEILEDENIGLI 92 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEESCH-----------HHHHTCTTCCEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCCH-----------HHHhcCCCCCEE
Confidence 47999998543333334444444567754 4443333 333333321 11112221 222223445555
Q ss_pred EEecc--CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006649 111 MMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (637)
Q Consensus 111 ILSa~--~d~e~a~kAl~~GA~DYLlKPi--s~eEL~~~Lq~V 149 (637)
+++.. .-.+.+.+|++.|..=|+.||+ +.++..++++.+
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 55433 3467788999999999999997 678887777654
No 338
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.42 E-value=52 Score=22.62 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
|+.++ ..|++..+||..+|.+. .-++++++++
T Consensus 14 i~~~~-~~g~s~~~IA~~lgis~-~Tv~~~~~~~ 45 (51)
T 1tc3_C 14 LDVMK-LLNVSLHEMSRKISRSR-HCIRVYLKDP 45 (51)
T ss_dssp HHHHH-HTTCCHHHHHHHHTCCH-HHHHHHHHCS
T ss_pred HHHHH-HcCCCHHHHHHHHCcCH-HHHHHHHhhH
Confidence 44443 46899999999999764 3455555554
No 339
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=21.41 E-value=2.9e+02 Score=28.74 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEeccCC
Q 006649 47 RILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLE--MDLPVIMMSADGR 117 (637)
Q Consensus 47 e~Lk~lL~~~gy~V~--~asng~EALelLre~~~~pDLVIlDI~MP-----dmDGlELLe~Ir~~--~~IPVIILSa~~d 117 (637)
+.++.+-+..+..|. .+.+.+++..+.+. ..|.|.+.-+-. ...-++++.+++.. .++|||.-.+-.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 445555555554443 45677777665543 379888743211 12356777777543 2799999999999
Q ss_pred HHHHHHHHHcCCCeEEe
Q 006649 118 VSAVMRGIRHGACDYLI 134 (637)
Q Consensus 118 ~e~a~kAl~~GA~DYLl 134 (637)
.+.+.+++..||+...+
T Consensus 292 ~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 292 GTDVFKALALGAAGVFI 308 (370)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEee
Confidence 99999999999988654
No 340
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.38 E-value=24 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=24.2
Q ss_pred HHHHHHhc-CC---CCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 248 KRILELMN-VP---GLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 248 KkILeLL~-v~---gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
.+||++|. .+ ++|..|||..+|-.. .-..+.++++
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~-~tV~~~L~~L 55 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPK-KEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCH-HHHHHHHHHH
Confidence 44665554 34 689999999999664 4566666665
No 341
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=21.30 E-value=3.6e+02 Score=23.19 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=42.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy~V~-~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir 102 (637)
.+|.-||-++...+..+..+...+..+. ...+..+.+..+......+|+|++|.-.. .+--++++.+.
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 3599999999999988888776543333 45566665554443222499999994322 22234555553
No 342
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.30 E-value=83 Score=25.89 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.9
Q ss_pred HHHhcCC-CCCHHHHHhhhccchhhHHHHHHHHHh
Q 006649 251 LELMNVP-GLTRENVASHLQEINLQKFRLYLKRLN 284 (637)
Q Consensus 251 LeLL~v~-gLti~EVAshVGy~d~qYFrk~FKk~~ 284 (637)
++++... |.++.+||..+|. +..-++++.|++.
T Consensus 15 v~~~~~~~g~s~~~ia~~~gI-s~~tl~rW~~~~~ 48 (97)
T 2jn6_A 15 VALYENSDGASLQQIANDLGI-NRVTLKNWIIKYG 48 (97)
T ss_dssp HHHHTTGGGSCHHHHHHHHTS-CHHHHHHHHHHHC
T ss_pred HHHHHHcCCChHHHHHHHHCc-CHHHHHHHHHHHh
Confidence 3455455 8999999999999 4677888888874
No 343
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.24 E-value=81 Score=26.88 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccc--hhhHHHHHHHHHhCCCC
Q 006649 248 KRILELMNVPGLTRENVASHLQEI--NLQKFRLYLKRLNGVSQ 288 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~--d~qYFrk~FKk~~G~T~ 288 (637)
+.|+.++ ..|++..|||+.+|.+ ..+++....++..|+..
T Consensus 40 ~~Vl~l~-~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 40 SEVLRLF-AEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp HHHHHHH-HHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 4456654 4899999999999986 33444444555556543
No 344
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=21.21 E-value=3.1e+02 Score=24.49 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=47.5
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006649 38 VVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (637)
Q Consensus 38 IVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILS 113 (637)
++|.+..+...|..+|....-.=....-..+.++.++..+ ..|||+=-+-...+-...+..+....++|++++.
T Consensus 1 ~~~~~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gk--a~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 1 MADQNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQ--ALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVP 74 (126)
T ss_dssp --CCTHHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTC--CSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEES
T ss_pred CCcccccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCC--ceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 4678888888999998764211012334567888888766 7888876555333445556666566889998754
No 345
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=21.05 E-value=1.6e+02 Score=29.47 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=43.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006649 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (637)
Q Consensus 80 pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~Vlr 151 (637)
.|++++-.. .+.-|..+++.+. ..+|||.... .. ..+.+..|-.+++..|-+.++|.+++..++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~-~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRV-GG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECC-TT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecC-CC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 477776443 2333566677663 4678775432 21 2234556778999999999999999988875
No 346
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=21.02 E-value=2e+02 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=38.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy~V~~asng~EALelLre~~~~pDLVIlDI 87 (637)
.|.+|.++..... ...+...+...+..+..+.+..++++++...+ .|.++.|.
T Consensus 110 ~g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~ 162 (239)
T 1lst_A 110 KGKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDLTAGR--LDAALQDE 162 (239)
T ss_dssp TTCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS--CSEEEEEH
T ss_pred CCCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC--CCEEEeCc
Confidence 3567777766543 33445554434678888999999999998765 99999974
No 347
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.89 E-value=69 Score=25.34 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=22.0
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHHH
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~FK 281 (637)
|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 17 l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~ 47 (88)
T 2wiu_B 17 MKLVRQQNGWTQSELAKKIGIK-QATISNFEN 47 (88)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCC-HHHHHHHHc
Confidence 3344555789999999999975 455666655
No 348
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=20.82 E-value=1.7e+02 Score=28.71 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC-CCcEEEEeccCCHHH
Q 006649 52 MLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVIMMSADGRVSA 120 (637)
Q Consensus 52 lL~~~gy~V~~asng---~EALelLre~~~~pDLVIlDI~MPdmDG-------lELLe~Ir~~~-~IPVIILSa~~d~e~ 120 (637)
.++..|..+..+-+. .+.++.+... ..+|+|++=.--|+.+| ++-++++|+.. +++ |.+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 666677776654433 3444444331 03798877655566544 45556665433 444 55566677889
Q ss_pred HHHHHHcCCCeEEe
Q 006649 121 VMRGIRHGACDYLI 134 (637)
Q Consensus 121 a~kAl~~GA~DYLl 134 (637)
+.++.+.||+-++.
T Consensus 187 i~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 187 TEISASHGANIIVA 200 (227)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999997654
No 349
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.81 E-value=3.5e+02 Score=24.15 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=43.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHh
Q 006649 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG 102 (637)
Q Consensus 34 irVLIVDDD~~~re~Lk~lL~~~gy-~V-~~asng~EALelLre~~~~pDLVIlDI~MPd--mDGlELLe~Ir 102 (637)
-+|.-||-++...+..++.+...+. .+ ....+..+.+..+. ...+|+|++|.-... .+-.++++.+.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~~ 138 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAALG 138 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHHH
Confidence 4799999999999998888876553 33 35666666544322 234999999853332 12334555553
No 350
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.74 E-value=44 Score=26.34 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
|.+++..-|+|..++|.++|.+ .++++++.
T Consensus 19 l~~~R~~~gltq~elA~~~gis-~~~is~~e 48 (83)
T 3f6w_A 19 LLEARSAAGITQKELAARLGRP-QSFVSKTE 48 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSC-HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 3344455689999999999974 44444443
No 351
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=20.74 E-value=41 Score=25.83 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
++|.+++..-|+|..++|.++|.+ .++++++.
T Consensus 13 ~~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e 44 (76)
T 3bs3_A 13 NRIKVVLAEKQRTNRWLAEQMGKS-ENTISRWC 44 (76)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 446677777899999999999975 34444444
No 352
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.73 E-value=44 Score=26.12 Aligned_cols=31 Identities=16% Similarity=-0.051 Sum_probs=21.7
Q ss_pred HHHHHhcCCCCCHHHHHhhhccchhhHHHHHH
Q 006649 249 RILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (637)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~d~qYFrk~F 280 (637)
+|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 6 ~lk~~r~~~glsq~~lA~~~gis-~~~i~~~e 36 (77)
T 2k9q_A 6 ELKVERIRLSLTAKSVAEEMGIS-RQQLCNIE 36 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHH
Confidence 44555666799999999999975 34444443
No 353
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=20.41 E-value=1.7e+02 Score=28.63 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC-CCCC-HHHHHHHHhccCCCcE--EEEeccCCHHHHHHHHHcCCCeEEeCCCC-H
Q 006649 65 QAAVALDILRERKGCFDVVLSDVHM-PDMD-GFKLLEHIGLEMDLPV--IMMSADGRVSAVMRGIRHGACDYLIKPIR-E 139 (637)
Q Consensus 65 ng~EALelLre~~~~pDLVIlDI~M-PdmD-GlELLe~Ir~~~~IPV--IILSa~~d~e~a~kAl~~GA~DYLlKPis-~ 139 (637)
+-.++++.++...+-.++=++|-+. |..+ |.++++.||...+.|+ -+++.. -..++..+.+.||+....-... .
T Consensus 14 ~l~~~i~~~~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~Ea~~ 92 (231)
T 3ctl_A 14 KFKEQIEFIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTR-PQDYIAQLARAGADFITLHPETIN 92 (231)
T ss_dssp GHHHHHHHHHTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSC-GGGTHHHHHHHTCSEEEECGGGCT
T ss_pred hHHHHHHHHHcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecC-HHHHHHHHHHcCCCEEEECcccCC
Confidence 4456677773221112233445442 4333 8999999987555554 445543 3446788999999877665433 3
Q ss_pred HHHHHHHHHH
Q 006649 140 EELKNIWQHV 149 (637)
Q Consensus 140 eEL~~~Lq~V 149 (637)
..+.++++.+
T Consensus 93 ~~~~~~i~~i 102 (231)
T 3ctl_A 93 GQAFRLIDEI 102 (231)
T ss_dssp TTHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 3455555554
No 354
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=20.38 E-value=3.7e+02 Score=26.09 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=44.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCC--HHH----HHHHHHcCCCeEEe-----CCCCHHHHHHHHH
Q 006649 79 CFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGR--VSA----VMRGIRHGACDYLI-----KPIREEELKNIWQ 147 (637)
Q Consensus 79 ~pDLVIlDI~MPdmDGlELLe~Ir~~~~IPVIILSa~~d--~e~----a~kAl~~GA~DYLl-----KPis~eEL~~~Lq 147 (637)
..|+|.+.. + -+++.++++....++|||...+-.. .+. +.++++.||+.... +.-++.+..+.+.
T Consensus 179 Gad~i~~~~--~--~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~ 254 (273)
T 2qjg_A 179 GADIVKTSY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVC 254 (273)
T ss_dssp TCSEEEECC--C--SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHH
T ss_pred CCCEEEECC--C--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHH
Confidence 389888874 2 4688888887556899999877663 444 66777899987643 3334444444444
Q ss_pred HHH
Q 006649 148 HVV 150 (637)
Q Consensus 148 ~Vl 150 (637)
.++
T Consensus 255 ~~~ 257 (273)
T 2qjg_A 255 KIV 257 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 355
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=20.24 E-value=2.1e+02 Score=31.06 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCCeEEe
Q 006649 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (637)
Q Consensus 67 ~EALelLre~~~~pDLVIlDI~MPdmD-GlELLe~Ir~~-~~IPVIILSa~~d~e~a~kAl~~GA~DYLl 134 (637)
.+..+.+.+.. +|+|.+|...+... -++++++++.. +++|||+ ..-.+.+.+..+.++||+...+
T Consensus 231 ~~~a~~l~~aG--~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 231 GERVAALVAAG--VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhhcc--cceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 44444444443 89999998876543 45778888754 4778776 3345678899999999987765
No 356
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=20.22 E-value=2.3e+02 Score=29.36 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=40.1
Q ss_pred HHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006649 96 KLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (637)
Q Consensus 96 ELLe~Ir~-~~~IPVIILSa~~d~e~a~kAl~~GA~DYLlKPis~eEL~~~Lq~V 149 (637)
+.++++|+ .+..+|.+-. ++.+.+.+|++.||+-.++.-+++++++++++.+
T Consensus 196 ~Av~~ar~~~p~~kIeVEv--~tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAIEC--DNISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHSSSCCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEE--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 34455553 3567777644 4578899999999999999999999999988764
No 357
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.09 E-value=95 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=24.5
Q ss_pred HHHHhcCCCCCHHHHHhhhccchhhHHHHHHHHH
Q 006649 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (637)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~d~qYFrk~FKk~ 283 (637)
|+++.. .|+++.+||..+|.+ ..-+++++|++
T Consensus 26 i~~~~~-~g~s~~~ia~~lgis-~~Tv~~w~~~~ 57 (128)
T 1pdn_C 26 IVEMAA-DGIRPCVISRQLRVS-HGCVSKILNRY 57 (128)
T ss_dssp HHHHHH-TTCCHHHHHHHHTCC-HHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHCcC-HHHHHHHHHHH
Confidence 445543 789999999999985 56677787776
No 358
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=20.08 E-value=61 Score=31.81 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=36.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeC-CCCCCCHHHHHHHHhccCCCc
Q 006649 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDV-HMPDMDGFKLLEHIGLEMDLP 108 (637)
Q Consensus 32 ~girVLIVDDD~~~re~Lk~lL~~~gy--~V~~asng~EALelLre~~~~pDLVIlDI-~MPdmDGlELLe~Ir~~~~IP 108 (637)
.+++|+|+--....|..-..+.+..+. ....+.+..+.++.+. ..+|+|++|= +.-+.+-+++++.+.. .+++
T Consensus 55 ~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~---~~~dvViIDEaQF~~~~~V~~l~~l~~-~~~~ 130 (214)
T 2j9r_A 55 AKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT---EEMDVIAIDEVQFFDGDIVEVVQVLAN-RGYR 130 (214)
T ss_dssp TTCCEEEEECC-----------------CCEEECSSGGGGGGGCC---SSCCEEEECCGGGSCTTHHHHHHHHHH-TTCE
T ss_pred CCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh---cCCCEEEEECcccCCHHHHHHHHHHhh-CCCE
Confidence 567888885322223222233333332 2333444444444332 2489999983 3434456788877753 3777
Q ss_pred EEEEe
Q 006649 109 VIMMS 113 (637)
Q Consensus 109 VIILS 113 (637)
||+..
T Consensus 131 Vi~~G 135 (214)
T 2j9r_A 131 VIVAG 135 (214)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66543
Done!