Query 006650
Match_columns 637
No_of_seqs 242 out of 2497
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 7E-116 1E-120 962.4 63.8 515 118-636 133-652 (716)
2 COG2274 SunT ABC-type bacterio 100.0 9.3E-96 2E-100 832.1 68.0 513 119-634 141-656 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 3.6E-96 8E-101 846.5 64.1 517 118-636 650-1174(1228)
4 TIGR00958 3a01208 Conjugate Tr 100.0 2.3E-92 5.1E-97 820.7 70.9 577 49-628 78-658 (711)
5 TIGR02868 CydC thiol reductant 100.0 7.7E-91 1.7E-95 784.7 68.5 508 121-633 2-516 (529)
6 PRK11174 cysteine/glutathione 100.0 2.1E-89 4.5E-94 782.4 70.0 509 119-633 9-531 (588)
7 COG1132 MdlB ABC-type multidru 100.0 3E-87 6.6E-92 761.2 69.2 505 119-631 3-509 (567)
8 TIGR01193 bacteriocin_ABC ABC- 100.0 2.1E-87 4.5E-92 780.8 68.5 541 76-632 113-656 (708)
9 TIGR03375 type_I_sec_LssB type 100.0 8.2E-87 1.8E-91 774.2 69.8 510 119-632 134-646 (694)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-86 5.4E-91 769.2 71.4 507 120-632 123-633 (686)
11 PTZ00265 multidrug resistance 100.0 1.2E-86 2.5E-91 814.7 71.1 510 119-632 812-1403(1466)
12 KOG0055 Multidrug/pheromone ex 100.0 1.4E-88 3E-93 783.6 47.9 511 120-635 15-536 (1228)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.7E-86 8E-91 770.8 68.5 541 76-632 111-660 (710)
14 PRK11160 cysteine/glutathione 100.0 3.5E-85 7.7E-90 744.3 69.3 509 120-633 4-521 (574)
15 PRK11176 lipid transporter ATP 100.0 1.3E-84 2.8E-89 742.2 70.9 515 115-632 8-525 (582)
16 TIGR02857 CydD thiol reductant 100.0 6.7E-84 1.4E-88 728.3 68.6 499 130-632 1-503 (529)
17 TIGR01846 type_I_sec_HlyB type 100.0 2.4E-83 5.3E-88 744.8 70.9 510 120-633 127-639 (694)
18 TIGR02203 MsbA_lipidA lipid A 100.0 5.4E-83 1.2E-87 727.4 70.5 510 121-633 3-515 (571)
19 PRK10790 putative multidrug tr 100.0 9.5E-83 2.1E-87 728.0 71.5 510 116-633 7-522 (592)
20 PRK13657 cyclic beta-1,2-gluca 100.0 6.4E-82 1.4E-86 720.5 71.8 513 116-633 3-517 (588)
21 TIGR01192 chvA glucan exporter 100.0 2.1E-81 4.6E-86 714.5 71.7 511 117-632 4-516 (585)
22 KOG0056 Heavy metal exporter H 100.0 5.3E-86 1.1E-90 688.6 30.8 491 134-630 217-717 (790)
23 TIGR02204 MsbA_rel ABC transpo 100.0 3.1E-81 6.7E-86 713.6 70.9 515 118-633 4-522 (576)
24 KOG0057 Mitochondrial Fe/S clu 100.0 1.8E-81 3.9E-86 668.8 54.8 512 117-634 10-534 (591)
25 PRK10789 putative multidrug tr 100.0 1.2E-79 2.7E-84 698.5 66.6 488 141-632 4-496 (569)
26 COG4988 CydD ABC-type transpor 100.0 4E-79 8.6E-84 660.8 65.2 456 177-636 46-505 (559)
27 TIGR01842 type_I_sec_PrtD type 100.0 8.5E-79 1.8E-83 688.5 67.8 494 128-632 2-499 (544)
28 PTZ00265 multidrug resistance 100.0 8.2E-79 1.8E-83 745.5 68.5 512 119-634 46-625 (1466)
29 COG4987 CydC ABC-type transpor 100.0 1.4E-78 3E-83 646.5 58.8 507 127-637 11-524 (573)
30 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.8E-78 8.2E-83 684.1 63.3 501 119-634 4-517 (555)
31 TIGR00957 MRP_assoc_pro multi 100.0 5.4E-78 1.2E-82 745.0 68.0 507 121-633 953-1467(1522)
32 PLN03130 ABC transporter C fam 100.0 2.7E-76 5.9E-81 729.4 68.2 506 121-633 902-1420(1622)
33 PTZ00243 ABC transporter; Prov 100.0 7.3E-76 1.6E-80 724.7 68.9 447 184-633 1011-1492(1560)
34 COG5265 ATM1 ABC-type transpor 100.0 1E-78 2.2E-83 629.0 35.3 438 191-631 2-443 (497)
35 PLN03232 ABC transporter C fam 100.0 1.7E-75 3.7E-80 721.9 65.9 450 177-633 956-1417(1495)
36 TIGR01271 CFTR_protein cystic 100.0 2.8E-71 6E-76 683.5 66.8 444 183-633 937-1399(1490)
37 COG4618 ArpD ABC-type protease 100.0 2.2E-71 4.8E-76 586.0 50.6 498 126-632 17-517 (580)
38 PRK10522 multidrug transporter 100.0 4.1E-70 8.8E-75 617.9 62.9 489 123-634 4-496 (547)
39 KOG0054 Multidrug resistance-a 100.0 3.5E-70 7.5E-75 644.7 55.6 509 121-635 804-1323(1381)
40 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-68 2.7E-73 615.5 60.7 503 115-632 74-627 (659)
41 PLN03232 ABC transporter C fam 100.0 2.4E-68 5.2E-73 658.3 66.6 483 128-634 297-787 (1495)
42 PLN03130 ABC transporter C fam 100.0 2.2E-67 4.8E-72 650.3 67.6 485 127-633 296-786 (1622)
43 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-60 2.4E-65 591.1 67.0 483 127-632 312-805 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 6.1E-58 1.3E-62 565.2 67.2 483 128-634 76-595 (1490)
45 KOG0054 Multidrug resistance-a 100.0 1E-56 2.2E-61 530.6 58.7 486 129-634 198-690 (1381)
46 PTZ00243 ABC transporter; Prov 100.0 5.2E-56 1.1E-60 548.5 64.1 490 123-631 235-826 (1560)
47 COG4178 ABC-type uncharacteriz 100.0 3.2E-43 7E-48 387.4 55.0 451 166-636 81-564 (604)
48 COG4615 PvdE ABC-type sideroph 100.0 2.4E-41 5.2E-46 347.5 47.3 489 123-636 4-497 (546)
49 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-44 2.9E-49 374.1 22.0 181 448-632 1-183 (275)
50 COG1126 GlnQ ABC-type polar am 100.0 8.9E-45 1.9E-49 349.0 16.8 170 449-631 2-180 (240)
51 COG1117 PstB ABC-type phosphat 100.0 2.2E-44 4.8E-49 344.8 15.8 180 448-636 6-197 (253)
52 COG1135 AbcC ABC-type metal io 100.0 2.7E-43 5.9E-48 354.8 17.1 174 450-632 2-186 (339)
53 cd03244 ABCC_MRP_domain2 Domai 100.0 5.4E-42 1.2E-46 344.2 22.4 182 448-632 1-184 (221)
54 COG2884 FtsE Predicted ATPase 100.0 1.6E-42 3.4E-47 326.5 14.8 172 450-633 2-182 (223)
55 cd03252 ABCC_Hemolysin The ABC 100.0 1E-41 2.2E-46 345.9 21.6 181 450-632 1-183 (237)
56 cd03254 ABCC_Glucan_exporter_l 100.0 1.6E-41 3.5E-46 342.6 21.7 182 448-632 1-184 (229)
57 PRK14257 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 359.9 21.4 178 447-632 78-270 (329)
58 cd03245 ABCC_bacteriocin_expor 100.0 3.3E-41 7.2E-46 338.3 22.5 183 448-632 1-185 (220)
59 cd03248 ABCC_TAP TAP, the Tran 100.0 3.3E-41 7.1E-46 339.8 21.5 186 446-632 8-195 (226)
60 COG1136 SalX ABC-type antimicr 100.0 3.9E-41 8.6E-46 332.7 20.4 175 450-633 2-188 (226)
61 COG1125 OpuBA ABC-type proline 100.0 5.3E-42 1.2E-46 336.0 14.0 169 450-631 2-179 (309)
62 cd03288 ABCC_SUR2 The SUR doma 100.0 6.7E-41 1.5E-45 344.2 22.4 185 445-632 15-201 (257)
63 cd03253 ABCC_ATM1_transporter 100.0 6.4E-41 1.4E-45 339.8 21.6 180 450-632 1-182 (236)
64 cd03251 ABCC_MsbA MsbA is an e 100.0 8.7E-41 1.9E-45 338.4 21.8 181 450-632 1-183 (234)
65 cd03250 ABCC_MRP_domain1 Domai 100.0 9.7E-41 2.1E-45 331.2 20.9 170 450-634 1-174 (204)
66 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.4E-40 3E-45 337.8 21.4 182 450-632 1-184 (238)
67 COG1116 TauB ABC-type nitrate/ 100.0 9.1E-41 2E-45 330.4 17.9 168 449-633 3-176 (248)
68 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-40 2.4E-45 333.7 18.5 173 450-632 2-183 (216)
69 COG3839 MalK ABC-type sugar tr 100.0 1.1E-40 2.4E-45 347.8 19.0 170 449-632 3-178 (338)
70 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-40 1.1E-44 329.3 21.5 181 451-635 2-189 (218)
71 TIGR02314 ABC_MetN D-methionin 100.0 2.4E-40 5.3E-45 351.7 19.3 174 450-632 2-185 (343)
72 COG1120 FepC ABC-type cobalami 100.0 2.8E-40 6.1E-45 332.7 18.0 172 449-632 2-183 (258)
73 cd03260 ABC_PstB_phosphate_tra 100.0 4.9E-40 1.1E-44 331.4 18.5 173 450-632 1-186 (227)
74 cd03261 ABC_Org_Solvent_Resist 100.0 5.5E-40 1.2E-44 332.9 18.6 171 450-632 1-181 (235)
75 COG3638 ABC-type phosphate/pho 100.0 7.6E-40 1.6E-44 318.8 17.4 174 449-633 3-193 (258)
76 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.5E-40 1.6E-44 328.0 17.8 174 450-632 1-185 (218)
77 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-39 2.5E-44 326.6 19.0 172 449-636 4-187 (254)
78 TIGR02673 FtsE cell division A 100.0 1.3E-39 2.8E-44 325.4 18.7 172 450-632 2-182 (214)
79 PRK11629 lolD lipoprotein tran 100.0 1.7E-39 3.7E-44 328.9 19.6 174 449-631 5-189 (233)
80 PRK13631 cbiO cobalt transport 100.0 2E-39 4.2E-44 342.7 20.8 178 448-632 20-221 (320)
81 PRK13650 cbiO cobalt transport 100.0 1.7E-39 3.7E-44 337.6 20.0 175 449-632 4-185 (279)
82 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-39 2.3E-44 327.9 17.7 174 449-635 3-185 (235)
83 cd03259 ABC_Carb_Solutes_like 100.0 7.7E-40 1.7E-44 326.8 16.5 169 450-632 1-175 (213)
84 cd03292 ABC_FtsE_transporter F 100.0 1.8E-39 3.9E-44 324.2 18.8 172 450-632 1-181 (214)
85 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-39 2.3E-44 324.0 16.7 168 451-632 1-171 (205)
86 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-39 2.4E-44 304.9 15.7 167 450-632 2-174 (231)
87 cd03266 ABC_NatA_sodium_export 100.0 2.6E-39 5.6E-44 324.1 19.3 173 450-632 2-181 (218)
88 TIGR02211 LolD_lipo_ex lipopro 100.0 2.8E-39 6E-44 324.5 19.4 174 450-632 2-186 (221)
89 cd03225 ABC_cobalt_CbiO_domain 100.0 1.8E-39 3.9E-44 323.6 17.9 172 451-632 1-179 (211)
90 PRK13647 cbiO cobalt transport 100.0 4.3E-39 9.2E-44 333.8 20.2 173 449-632 4-183 (274)
91 TIGR02315 ABC_phnC phosphonate 100.0 4.7E-39 1E-43 327.5 19.7 172 450-632 2-190 (243)
92 cd03256 ABC_PhnC_transporter A 100.0 4E-39 8.7E-44 327.5 18.9 172 450-632 1-189 (241)
93 cd03268 ABC_BcrA_bacitracin_re 100.0 3.5E-39 7.6E-44 320.9 17.8 169 450-632 1-171 (208)
94 cd03264 ABC_drug_resistance_li 100.0 3.8E-39 8.2E-44 321.4 17.8 168 450-631 1-174 (211)
95 COG3842 PotA ABC-type spermidi 100.0 1.9E-39 4E-44 340.3 16.2 171 448-632 4-181 (352)
96 cd03235 ABC_Metallic_Cations A 100.0 2.2E-39 4.7E-44 323.6 15.9 165 451-632 1-177 (213)
97 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-38 2.8E-43 316.7 20.9 166 448-632 5-170 (207)
98 PRK10908 cell division protein 100.0 6.8E-39 1.5E-43 322.1 19.1 172 450-632 2-182 (222)
99 PRK11650 ugpC glycerol-3-phosp 100.0 5.7E-39 1.2E-43 343.6 19.5 171 449-632 3-179 (356)
100 PRK11153 metN DL-methionine tr 100.0 5.6E-39 1.2E-43 342.7 19.2 174 450-632 2-185 (343)
101 PRK14250 phosphate ABC transpo 100.0 1.2E-38 2.5E-43 324.5 20.5 172 449-632 3-176 (241)
102 PRK14269 phosphate ABC transpo 100.0 5.7E-39 1.2E-43 327.8 18.2 176 449-632 2-187 (246)
103 cd03301 ABC_MalK_N The N-termi 100.0 5.9E-39 1.3E-43 320.3 17.9 169 450-632 1-175 (213)
104 cd03263 ABC_subfamily_A The AB 100.0 7.2E-39 1.6E-43 321.3 18.6 172 450-632 1-178 (220)
105 cd03231 ABC_CcmA_heme_exporter 100.0 1.6E-38 3.6E-43 314.6 20.6 169 450-632 1-170 (201)
106 cd03262 ABC_HisP_GlnQ_permease 100.0 6.5E-39 1.4E-43 320.0 17.6 171 450-632 1-180 (213)
107 cd03224 ABC_TM1139_LivF_branch 100.0 1E-38 2.2E-43 320.5 19.0 171 450-632 1-177 (222)
108 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.1E-39 1.3E-43 322.0 17.0 169 450-632 1-176 (220)
109 PRK10584 putative ABC transpor 100.0 1.8E-38 4E-43 320.2 20.3 175 449-632 6-191 (228)
110 cd03219 ABC_Mj1267_LivG_branch 100.0 9.2E-39 2E-43 324.0 18.0 173 450-632 1-188 (236)
111 cd03296 ABC_CysA_sulfate_impor 100.0 9E-39 2E-43 324.8 18.0 170 449-632 2-181 (239)
112 PRK13637 cbiO cobalt transport 100.0 1.2E-38 2.7E-43 332.4 19.5 174 449-631 2-188 (287)
113 PRK13643 cbiO cobalt transport 100.0 1.6E-38 3.4E-43 331.8 20.1 174 450-634 2-190 (288)
114 PRK11432 fbpC ferric transport 100.0 8.2E-39 1.8E-43 341.5 18.4 170 449-632 6-181 (351)
115 cd03258 ABC_MetN_methionine_tr 100.0 1.5E-38 3.2E-43 321.9 19.2 174 450-632 2-185 (233)
116 PRK13635 cbiO cobalt transport 100.0 2.1E-38 4.5E-43 329.4 19.9 174 449-632 5-185 (279)
117 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.2E-38 1.6E-42 325.0 23.9 190 422-634 15-206 (282)
118 TIGR00972 3a0107s01c2 phosphat 100.0 1.6E-38 3.5E-43 324.6 18.6 175 450-632 2-189 (247)
119 cd03265 ABC_DrrA DrrA is the A 100.0 2E-38 4.4E-43 318.2 18.9 171 450-633 1-177 (220)
120 PRK11247 ssuB aliphatic sulfon 100.0 2.5E-38 5.5E-43 324.7 20.0 167 448-632 11-178 (257)
121 PRK13632 cbiO cobalt transport 100.0 2.3E-38 4.9E-43 327.9 19.8 174 449-632 7-187 (271)
122 PRK13540 cytochrome c biogenes 100.0 2.7E-38 5.9E-43 312.8 19.4 170 450-632 2-172 (200)
123 PRK13646 cbiO cobalt transport 100.0 1.9E-38 4.1E-43 330.9 18.8 177 449-632 2-190 (286)
124 PRK14273 phosphate ABC transpo 100.0 1.8E-38 3.9E-43 325.6 17.9 176 449-632 7-195 (254)
125 PRK10247 putative ABC transpor 100.0 4.7E-38 1E-42 316.8 20.7 171 449-632 7-182 (225)
126 PRK10575 iron-hydroxamate tran 100.0 2.5E-38 5.4E-43 326.6 19.1 172 449-632 11-192 (265)
127 TIGR01189 ccmA heme ABC export 100.0 2.7E-38 5.8E-43 312.3 18.1 170 450-632 1-172 (198)
128 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2E-38 4.3E-43 323.0 17.6 172 450-632 1-180 (242)
129 PRK13634 cbiO cobalt transport 100.0 3E-38 6.4E-43 330.0 19.3 174 449-631 2-189 (290)
130 TIGR03265 PhnT2 putative 2-ami 100.0 2.5E-38 5.5E-43 338.2 19.0 170 449-632 4-179 (353)
131 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.7E-38 1.2E-42 312.9 20.1 167 450-632 1-173 (211)
132 PRK14242 phosphate transporter 100.0 2.4E-38 5.1E-43 324.5 17.8 174 449-632 6-194 (253)
133 cd03257 ABC_NikE_OppD_transpor 100.0 6.1E-38 1.3E-42 316.1 20.5 176 450-632 2-190 (228)
134 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.9E-38 4.2E-43 328.1 17.1 170 451-632 26-205 (269)
135 PRK11124 artP arginine transpo 100.0 3.6E-38 7.7E-43 321.0 18.7 171 449-631 2-185 (242)
136 cd03218 ABC_YhbG The ABC trans 100.0 3.9E-38 8.4E-43 318.6 18.7 172 450-631 1-177 (232)
137 PRK13642 cbiO cobalt transport 100.0 6.7E-38 1.4E-42 325.4 20.9 174 449-631 4-184 (277)
138 PRK11231 fecE iron-dicitrate t 100.0 4.3E-38 9.3E-43 323.0 19.0 171 450-632 3-183 (255)
139 PRK13636 cbiO cobalt transport 100.0 5E-38 1.1E-42 327.3 19.7 172 449-631 5-185 (283)
140 cd03269 ABC_putative_ATPase Th 100.0 3.1E-38 6.7E-43 314.6 17.2 167 450-632 1-173 (210)
141 PRK10744 pstB phosphate transp 100.0 6.7E-38 1.5E-42 322.5 20.3 176 447-632 11-201 (260)
142 TIGR03608 L_ocin_972_ABC putat 100.0 3.4E-38 7.4E-43 313.1 17.3 169 452-632 1-179 (206)
143 PRK09536 btuD corrinoid ABC tr 100.0 4.4E-38 9.5E-43 340.2 19.6 171 449-631 3-183 (402)
144 PRK13652 cbiO cobalt transport 100.0 7.1E-38 1.5E-42 325.2 20.1 171 450-631 4-181 (277)
145 TIGR03005 ectoine_ehuA ectoine 100.0 6E-38 1.3E-42 321.3 19.3 171 450-632 1-191 (252)
146 cd03246 ABCC_Protease_Secretio 100.0 7.7E-38 1.7E-42 302.5 18.6 141 450-632 1-141 (173)
147 TIGR02982 heterocyst_DevA ABC 100.0 8.6E-38 1.9E-42 313.8 19.5 174 450-632 2-186 (220)
148 PRK13538 cytochrome c biogenes 100.0 7.8E-38 1.7E-42 310.5 18.8 170 450-632 2-174 (204)
149 PRK14235 phosphate transporter 100.0 5.2E-38 1.1E-42 324.5 18.2 177 447-631 17-207 (267)
150 TIGR01186 proV glycine betaine 100.0 4.1E-38 8.8E-43 336.5 17.8 159 465-632 6-174 (363)
151 PRK09452 potA putrescine/sperm 100.0 6.6E-38 1.4E-42 336.9 19.4 170 449-632 14-189 (375)
152 PRK09493 glnQ glutamine ABC tr 100.0 6.3E-38 1.4E-42 318.8 18.3 171 450-632 2-181 (240)
153 PRK13651 cobalt transporter AT 100.0 8.2E-38 1.8E-42 328.4 19.6 174 449-631 2-209 (305)
154 PRK10851 sulfate/thiosulfate t 100.0 7.1E-38 1.5E-42 334.7 19.5 170 449-632 2-181 (353)
155 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.7E-38 1.7E-42 317.4 18.6 172 450-632 2-177 (236)
156 PRK11000 maltose/maltodextrin 100.0 7.6E-38 1.6E-42 336.8 19.3 170 449-632 3-178 (369)
157 PRK13649 cbiO cobalt transport 100.0 8.1E-38 1.7E-42 325.3 18.7 174 450-632 3-190 (280)
158 TIGR03410 urea_trans_UrtE urea 100.0 1E-37 2.3E-42 315.1 19.0 170 450-632 1-176 (230)
159 PRK13644 cbiO cobalt transport 100.0 1.2E-37 2.7E-42 322.9 20.0 171 450-631 2-180 (274)
160 PRK11831 putative ABC transpor 100.0 8.1E-38 1.8E-42 323.5 18.5 172 449-632 7-188 (269)
161 PRK13548 hmuV hemin importer A 100.0 2E-37 4.3E-42 318.7 21.2 171 450-632 3-185 (258)
162 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-37 2.7E-42 316.9 19.3 169 450-632 3-188 (242)
163 PRK13638 cbiO cobalt transport 100.0 1.2E-37 2.7E-42 322.4 19.4 171 450-632 2-181 (271)
164 PRK14247 phosphate ABC transpo 100.0 7.2E-38 1.6E-42 320.3 17.4 176 449-632 3-191 (250)
165 KOG0060 Long-chain acyl-CoA tr 100.0 1.1E-34 2.4E-39 311.3 42.5 389 232-631 186-614 (659)
166 PRK13640 cbiO cobalt transport 100.0 2.3E-37 4.9E-42 322.2 21.3 175 448-632 4-188 (282)
167 PRK14267 phosphate ABC transpo 100.0 8E-38 1.7E-42 320.5 17.2 176 449-632 4-194 (253)
168 cd03247 ABCC_cytochrome_bd The 100.0 9.8E-38 2.1E-42 303.2 16.8 143 450-632 1-143 (178)
169 PRK13633 cobalt transporter AT 100.0 1.4E-37 3E-42 323.5 19.1 174 449-631 4-188 (280)
170 PRK11607 potG putrescine trans 100.0 1.2E-37 2.6E-42 335.4 19.1 173 447-633 17-195 (377)
171 TIGR01277 thiQ thiamine ABC tr 100.0 2.1E-37 4.6E-42 309.3 19.4 167 450-632 1-173 (213)
172 PRK11264 putative amino-acid A 100.0 1.3E-37 2.9E-42 318.2 18.3 170 450-631 4-188 (250)
173 PRK13648 cbiO cobalt transport 100.0 1.8E-37 3.9E-42 320.9 19.3 174 449-632 7-187 (269)
174 PRK13645 cbiO cobalt transport 100.0 2.1E-37 4.5E-42 323.7 19.9 176 447-632 4-195 (289)
175 PRK14259 phosphate ABC transpo 100.0 3E-37 6.6E-42 319.1 20.8 174 448-631 12-198 (269)
176 PRK14240 phosphate transporter 100.0 1.5E-37 3.3E-42 317.9 18.1 177 448-632 2-191 (250)
177 PRK11300 livG leucine/isoleuci 100.0 2.4E-37 5.2E-42 317.3 19.6 176 449-632 5-198 (255)
178 PRK11614 livF leucine/isoleuci 100.0 1.7E-37 3.6E-42 315.1 18.2 175 449-632 5-182 (237)
179 TIGR03258 PhnT 2-aminoethylpho 100.0 1.3E-37 2.8E-42 333.4 18.3 171 447-631 3-181 (362)
180 TIGR01166 cbiO cobalt transpor 100.0 1.5E-37 3.2E-42 305.0 17.1 159 465-632 5-172 (190)
181 PRK14237 phosphate transporter 100.0 1.8E-37 3.9E-42 320.6 18.5 177 446-632 17-208 (267)
182 PRK10253 iron-enterobactin tra 100.0 2.2E-37 4.7E-42 319.6 19.0 173 448-632 6-188 (265)
183 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-37 5.2E-42 317.6 19.1 170 450-631 2-181 (256)
184 PRK13539 cytochrome c biogenes 100.0 3E-37 6.5E-42 307.0 19.1 168 450-632 3-172 (207)
185 COG4619 ABC-type uncharacteriz 100.0 5.6E-38 1.2E-42 289.7 12.5 162 464-635 15-181 (223)
186 cd03233 ABC_PDR_domain1 The pl 100.0 2E-37 4.4E-42 307.1 17.6 156 449-632 3-163 (202)
187 PRK14251 phosphate ABC transpo 100.0 2.1E-37 4.6E-42 317.0 17.9 176 449-632 4-192 (251)
188 PRK11248 tauB taurine transpor 100.0 2.9E-37 6.2E-42 316.8 18.9 166 450-632 2-173 (255)
189 PRK10771 thiQ thiamine transpo 100.0 5.7E-37 1.2E-41 310.2 20.7 167 450-632 2-174 (232)
190 cd03229 ABC_Class3 This class 100.0 2.9E-37 6.4E-42 299.9 17.8 142 450-632 1-145 (178)
191 cd03230 ABC_DR_subfamily_A Thi 100.0 3.1E-37 6.7E-42 298.3 17.8 139 450-632 1-140 (173)
192 PRK14236 phosphate transporter 100.0 3.3E-37 7.1E-42 319.4 19.2 176 447-632 23-213 (272)
193 PRK13641 cbiO cobalt transport 100.0 3.6E-37 7.8E-42 321.5 19.7 176 449-634 2-191 (287)
194 PRK10895 lipopolysaccharide AB 100.0 3.2E-37 6.9E-42 313.8 18.8 175 449-634 3-183 (241)
195 PRK15079 oligopeptide ABC tran 100.0 3.2E-37 6.9E-42 327.2 19.5 174 449-631 8-205 (331)
196 PRK14249 phosphate ABC transpo 100.0 3.9E-37 8.4E-42 315.2 19.3 174 448-631 3-191 (251)
197 cd03300 ABC_PotA_N PotA is an 100.0 1.8E-37 3.9E-42 313.9 16.6 168 450-631 1-174 (232)
198 PRK10619 histidine/lysine/argi 100.0 3.3E-37 7.1E-42 316.8 18.6 176 448-635 4-199 (257)
199 TIGR02769 nickel_nikE nickel i 100.0 3.8E-37 8.3E-42 317.7 19.2 174 450-632 3-195 (265)
200 PRK14248 phosphate ABC transpo 100.0 5E-37 1.1E-41 317.4 19.9 176 449-632 21-209 (268)
201 TIGR01288 nodI ATP-binding ABC 100.0 3.6E-37 7.8E-42 323.9 19.0 171 449-632 4-180 (303)
202 COG1124 DppF ABC-type dipeptid 100.0 2.9E-37 6.2E-42 302.9 16.9 174 449-632 3-186 (252)
203 PRK14274 phosphate ABC transpo 100.0 3.3E-37 7.1E-42 317.2 17.9 175 449-631 12-199 (259)
204 TIGR00968 3a0106s01 sulfate AB 100.0 3.2E-37 7E-42 313.1 17.6 168 450-631 1-174 (237)
205 PRK14239 phosphate transporter 100.0 4E-37 8.7E-42 315.1 18.3 174 449-632 5-193 (252)
206 PRK14256 phosphate ABC transpo 100.0 5.4E-37 1.2E-41 314.3 19.1 177 447-631 2-192 (252)
207 PRK14260 phosphate ABC transpo 100.0 3.6E-37 7.8E-42 316.9 17.9 177 448-632 6-195 (259)
208 cd03234 ABCG_White The White s 100.0 2.6E-37 5.5E-42 311.6 16.4 176 450-632 4-188 (226)
209 PRK13639 cbiO cobalt transport 100.0 5E-37 1.1E-41 318.5 18.9 172 450-632 2-182 (275)
210 PRK10070 glycine betaine trans 100.0 4.5E-37 9.8E-42 332.2 18.9 158 466-632 42-209 (400)
211 PRK14243 phosphate transporter 100.0 6.3E-37 1.4E-41 316.0 19.1 175 449-631 10-195 (264)
212 COG1127 Ttg2A ABC-type transpo 100.0 3E-37 6.4E-42 301.4 15.6 172 448-631 7-189 (263)
213 PRK14254 phosphate ABC transpo 100.0 7.9E-37 1.7E-41 318.4 19.8 177 448-632 38-225 (285)
214 PRK14261 phosphate ABC transpo 100.0 5.6E-37 1.2E-41 314.3 18.2 173 449-631 6-193 (253)
215 PRK13537 nodulation ABC transp 100.0 5.6E-37 1.2E-41 322.5 18.6 172 448-632 6-183 (306)
216 PRK14268 phosphate ABC transpo 100.0 6.9E-37 1.5E-41 314.6 18.8 177 448-632 11-199 (258)
217 PRK13543 cytochrome c biogenes 100.0 9.7E-37 2.1E-41 304.9 19.2 169 449-632 11-182 (214)
218 PRK14262 phosphate ABC transpo 100.0 4.2E-37 9E-42 314.7 16.8 174 449-632 3-191 (250)
219 PRK14241 phosphate transporter 100.0 7.5E-37 1.6E-41 314.3 18.5 176 449-632 4-193 (258)
220 PRK14245 phosphate ABC transpo 100.0 4.9E-37 1.1E-41 314.2 16.9 174 449-632 3-191 (250)
221 TIGR01978 sufC FeS assembly AT 100.0 7E-37 1.5E-41 311.5 17.6 173 450-632 1-189 (243)
222 PRK14253 phosphate ABC transpo 100.0 8.4E-37 1.8E-41 312.2 17.9 176 449-632 3-190 (249)
223 PRK14270 phosphate ABC transpo 100.0 9.7E-37 2.1E-41 312.2 18.2 176 449-632 4-192 (251)
224 PRK14271 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 315.0 19.9 173 449-631 21-207 (276)
225 PRK13541 cytochrome c biogenes 100.0 1.2E-36 2.6E-41 299.8 18.2 165 450-631 2-167 (195)
226 PRK09984 phosphonate/organopho 100.0 1.4E-36 3E-41 313.0 19.3 172 449-632 4-197 (262)
227 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-36 2.7E-41 292.1 17.6 136 450-632 1-136 (166)
228 PRK14238 phosphate transporter 100.0 1.5E-36 3.2E-41 314.3 19.3 174 449-632 24-212 (271)
229 cd03228 ABCC_MRP_Like The MRP 100.0 1.6E-36 3.5E-41 292.8 18.2 141 450-632 1-141 (171)
230 PRK14244 phosphate ABC transpo 100.0 5.2E-37 1.1E-41 314.2 15.7 174 449-632 5-194 (251)
231 PRK13547 hmuV hemin importer A 100.0 2.4E-36 5.3E-41 312.5 20.2 171 450-632 2-199 (272)
232 PRK14266 phosphate ABC transpo 100.0 1.2E-36 2.5E-41 311.4 17.5 176 449-632 3-191 (250)
233 TIGR03522 GldA_ABC_ATP gliding 100.0 1.4E-36 3.1E-41 319.0 18.4 170 449-631 2-177 (301)
234 PRK14258 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 312.4 18.4 177 448-632 6-195 (261)
235 PRK15112 antimicrobial peptide 100.0 2.2E-36 4.7E-41 312.5 19.4 175 449-632 4-194 (267)
236 PRK11308 dppF dipeptide transp 100.0 2.9E-36 6.3E-41 319.5 20.4 176 449-632 5-199 (327)
237 PRK14255 phosphate ABC transpo 100.0 2.4E-36 5.1E-41 309.5 19.0 174 449-632 5-193 (252)
238 PRK11144 modC molybdate transp 100.0 2.1E-36 4.7E-41 323.9 19.3 167 450-632 2-173 (352)
239 PRK14265 phosphate ABC transpo 100.0 3.2E-36 6.9E-41 312.3 19.8 177 448-632 19-206 (274)
240 PRK14264 phosphate ABC transpo 100.0 2.7E-36 5.8E-41 317.4 19.4 175 448-632 44-245 (305)
241 TIGR02324 CP_lyasePhnL phospho 100.0 3E-36 6.4E-41 303.3 18.5 175 450-632 2-194 (224)
242 cd03215 ABC_Carb_Monos_II This 100.0 2.6E-36 5.5E-41 294.3 17.3 141 449-632 4-149 (182)
243 PRK14275 phosphate ABC transpo 100.0 2.3E-36 5.1E-41 315.1 18.2 177 448-632 38-227 (286)
244 TIGR03740 galliderm_ABC gallid 100.0 3E-36 6.4E-41 303.2 17.8 167 450-632 1-169 (223)
245 PRK14252 phosphate ABC transpo 100.0 2.7E-36 5.8E-41 311.5 17.8 175 447-631 14-205 (265)
246 cd03299 ABC_ModC_like Archeal 100.0 3.9E-36 8.4E-41 304.8 18.5 168 450-632 1-174 (235)
247 PRK14263 phosphate ABC transpo 100.0 3.2E-36 6.9E-41 310.1 18.0 176 449-632 8-194 (261)
248 PRK13536 nodulation factor exp 100.0 3.4E-36 7.5E-41 320.2 18.7 171 449-632 41-217 (340)
249 PRK11022 dppD dipeptide transp 100.0 3.8E-36 8.3E-41 318.6 18.6 177 450-632 4-198 (326)
250 PRK14272 phosphate ABC transpo 100.0 3.5E-36 7.5E-41 308.2 17.5 176 449-632 4-193 (252)
251 PRK15056 manganese/iron transp 100.0 5E-36 1.1E-40 310.6 18.6 170 449-632 6-187 (272)
252 cd03297 ABC_ModC_molybdenum_tr 100.0 5E-36 1.1E-40 299.6 17.6 167 450-632 2-176 (214)
253 TIGR01188 drrA daunorubicin re 100.0 3.5E-36 7.7E-41 316.2 16.7 158 465-632 6-169 (302)
254 COG1118 CysA ABC-type sulfate/ 100.0 2.5E-36 5.4E-41 303.8 14.5 169 449-631 2-181 (345)
255 cd03213 ABCG_EPDR ABCG transpo 100.0 5.2E-36 1.1E-40 295.1 16.6 148 449-632 3-156 (194)
256 cd03232 ABC_PDR_domain2 The pl 100.0 5.2E-36 1.1E-40 294.6 16.2 146 449-631 3-152 (192)
257 PRK11701 phnK phosphonate C-P 100.0 1.2E-35 2.7E-40 305.3 19.5 175 449-632 6-196 (258)
258 TIGR03415 ABC_choXWV_ATP choli 100.0 4.5E-36 9.8E-41 322.2 16.7 167 454-632 29-209 (382)
259 PRK09580 sufC cysteine desulfu 100.0 8.7E-36 1.9E-40 304.4 17.8 174 450-631 2-189 (248)
260 PRK09544 znuC high-affinity zi 100.0 1.5E-35 3.2E-40 303.3 19.3 159 449-632 4-165 (251)
261 TIGR02142 modC_ABC molybdenum 100.0 1.2E-35 2.5E-40 318.7 18.7 164 454-632 4-176 (354)
262 PRK09473 oppD oligopeptide tra 100.0 1.8E-35 4E-40 313.8 19.1 175 449-631 12-205 (330)
263 PRK10419 nikE nickel transport 100.0 1.5E-35 3.3E-40 306.3 17.9 176 450-632 4-196 (268)
264 PRK14246 phosphate ABC transpo 100.0 9.7E-36 2.1E-40 305.9 16.2 176 448-631 9-197 (257)
265 PRK15093 antimicrobial peptide 100.0 2.6E-35 5.6E-40 313.1 19.0 174 450-632 4-203 (330)
266 TIGR02323 CP_lyasePhnK phospho 100.0 3.4E-35 7.4E-40 301.1 18.9 175 449-633 3-194 (253)
267 COG1131 CcmA ABC-type multidru 100.0 3E-35 6.4E-40 307.1 18.6 172 449-632 4-181 (293)
268 CHL00131 ycf16 sulfate ABC tra 100.0 3.8E-35 8.3E-40 300.5 19.1 173 449-632 7-196 (252)
269 PRK10418 nikD nickel transport 100.0 3.2E-35 7E-40 301.5 18.4 170 449-632 4-185 (254)
270 cd03214 ABC_Iron-Siderophores_ 100.0 2E-35 4.3E-40 287.5 15.3 141 451-631 1-141 (180)
271 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.5E-35 1.8E-39 287.9 17.5 146 450-632 1-149 (200)
272 cd03216 ABC_Carb_Monos_I This 100.0 9.1E-35 2E-39 278.4 17.1 126 450-632 1-127 (163)
273 PRK11288 araG L-arabinose tran 100.0 4.2E-35 9.1E-40 328.8 16.9 172 449-632 4-185 (501)
274 PRK15439 autoinducer 2 ABC tra 100.0 9.8E-35 2.1E-39 326.3 19.9 172 449-632 11-185 (510)
275 PRK13549 xylose transporter AT 100.0 4.8E-35 1E-39 328.8 17.2 174 449-632 5-188 (506)
276 PRK09700 D-allose transporter 100.0 5.7E-35 1.2E-39 328.5 17.1 172 449-632 5-190 (510)
277 PRK10762 D-ribose transporter 100.0 6.7E-35 1.4E-39 327.2 16.7 171 449-631 4-185 (501)
278 cd03267 ABC_NatA_like Similar 100.0 1.1E-34 2.4E-39 294.4 16.6 157 466-632 35-198 (236)
279 TIGR01184 ntrCD nitrate transp 100.0 2E-34 4.4E-39 291.3 16.9 151 468-632 1-159 (230)
280 PRK03695 vitamin B12-transport 100.0 3.5E-34 7.7E-39 292.8 18.5 166 450-632 1-178 (248)
281 COG4181 Predicted ABC-type tra 100.0 2.4E-34 5.2E-39 266.5 14.8 178 449-635 6-194 (228)
282 PRK10938 putative molybdenum t 100.0 3.6E-34 7.8E-39 320.5 18.6 168 450-632 4-180 (490)
283 PRK10982 galactose/methyl gala 100.0 2.7E-34 5.9E-39 321.5 17.3 171 452-632 1-179 (491)
284 PRK10261 glutathione transport 100.0 4.2E-34 9E-39 328.0 19.2 175 449-632 313-508 (623)
285 TIGR02633 xylG D-xylose ABC tr 100.0 6E-34 1.3E-38 319.6 17.4 173 450-632 2-186 (500)
286 PLN03211 ABC transporter G-25; 100.0 1.7E-33 3.6E-38 323.2 20.0 159 465-632 81-251 (659)
287 TIGR02770 nickel_nikD nickel i 100.0 1.2E-33 2.6E-38 285.7 15.7 156 467-632 1-170 (230)
288 PRK10535 macrolide transporter 100.0 2.9E-33 6.3E-38 322.2 20.8 176 449-634 4-190 (648)
289 PRK15134 microcin C ABC transp 100.0 2E-33 4.3E-38 317.3 18.7 175 449-632 5-201 (529)
290 PRK15134 microcin C ABC transp 100.0 1.2E-33 2.7E-38 319.0 17.1 174 449-632 275-470 (529)
291 PF00005 ABC_tran: ABC transpo 100.0 5.7E-34 1.2E-38 264.1 11.8 134 468-616 1-137 (137)
292 PRK13549 xylose transporter AT 100.0 1.2E-33 2.5E-38 317.5 16.6 176 449-631 259-449 (506)
293 PRK10261 glutathione transport 100.0 2.4E-33 5.3E-38 321.6 19.3 176 449-634 12-214 (623)
294 TIGR00955 3a01204 The Eye Pigm 100.0 6.3E-34 1.4E-38 326.1 14.2 176 448-632 16-211 (617)
295 TIGR03269 met_CoM_red_A2 methy 100.0 2E-33 4.2E-38 316.8 17.3 175 449-632 279-472 (520)
296 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.8E-33 3.9E-38 283.3 15.1 160 450-632 23-187 (224)
297 PRK09700 D-allose transporter 100.0 1.6E-33 3.5E-38 316.8 16.2 171 449-631 265-453 (510)
298 TIGR03269 met_CoM_red_A2 methy 100.0 2.5E-33 5.3E-38 316.0 17.4 171 450-632 1-213 (520)
299 COG0410 LivF ABC-type branched 100.0 8.3E-33 1.8E-37 269.8 17.3 173 450-631 4-180 (237)
300 TIGR03771 anch_rpt_ABC anchore 100.0 3.4E-33 7.3E-38 281.1 14.9 146 473-632 1-158 (223)
301 TIGR02633 xylG D-xylose ABC tr 100.0 3.6E-33 7.9E-38 313.2 16.3 179 449-635 257-450 (500)
302 COG4525 TauB ABC-type taurine 100.0 2.3E-33 5.1E-38 265.0 12.3 170 450-634 4-179 (259)
303 COG1123 ATPase components of v 100.0 5.3E-33 1.1E-37 303.2 16.5 175 449-632 280-474 (539)
304 COG4175 ProV ABC-type proline/ 100.0 3.2E-33 6.8E-38 281.6 13.2 175 449-632 4-209 (386)
305 COG4555 NatA ABC-type Na+ tran 100.0 8.1E-33 1.7E-37 262.9 13.9 169 450-630 2-176 (245)
306 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.8E-33 1.2E-37 284.5 13.6 167 453-631 4-183 (255)
307 cd03237 ABC_RNaseL_inhibitor_d 100.0 2E-32 4.4E-37 279.3 16.9 153 457-632 1-160 (246)
308 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-32 4E-37 336.7 19.7 173 449-632 759-947 (1394)
309 COG4608 AppF ABC-type oligopep 100.0 1.1E-32 2.3E-37 276.5 13.8 142 449-630 4-152 (268)
310 TIGR01257 rim_protein retinal- 100.0 3.7E-32 8.1E-37 335.2 20.1 174 448-632 927-1106(2272)
311 PRK11819 putative ABC transpor 100.0 2.8E-32 6.1E-37 309.4 17.1 167 449-631 6-207 (556)
312 PRK13545 tagH teichoic acids e 100.0 6.7E-32 1.4E-36 295.7 18.6 162 449-632 21-188 (549)
313 PRK15064 ABC transporter ATP-b 100.0 7.5E-32 1.6E-36 304.5 19.6 160 449-631 319-482 (530)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 7E-32 1.5E-36 253.1 15.6 114 450-631 1-114 (144)
315 COG4559 ABC-type hemin transpo 100.0 9.3E-32 2E-36 257.6 16.6 170 450-631 2-185 (259)
316 PRK10762 D-ribose transporter 100.0 3.1E-32 6.8E-37 305.6 15.6 169 449-632 257-440 (501)
317 PRK10938 putative molybdenum t 100.0 3.3E-32 7.1E-37 304.7 15.7 172 449-632 260-446 (490)
318 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.5E-32 2.1E-36 305.0 19.3 168 449-632 4-206 (552)
319 PRK15064 ABC transporter ATP-b 100.0 6.9E-32 1.5E-36 304.9 17.6 166 450-631 2-199 (530)
320 COG1129 MglA ABC-type sugar tr 100.0 1.6E-31 3.4E-36 289.9 19.4 176 449-635 8-192 (500)
321 COG1137 YhbG ABC-type (unclass 100.0 7E-33 1.5E-37 263.1 7.6 181 448-636 3-187 (243)
322 PRK13546 teichoic acids export 100.0 1.2E-31 2.7E-36 276.2 17.3 162 449-632 4-188 (264)
323 COG4148 ModC ABC-type molybdat 100.0 3.1E-32 6.8E-37 270.1 12.3 157 469-636 15-176 (352)
324 PRK11288 araG L-arabinose tran 100.0 5.5E-32 1.2E-36 303.6 15.2 169 449-631 257-440 (501)
325 TIGR01257 rim_protein retinal- 100.0 1.8E-31 3.9E-36 329.2 19.7 174 448-632 1936-2115(2272)
326 COG1123 ATPase components of v 100.0 1.7E-31 3.8E-36 291.3 16.3 177 449-635 5-201 (539)
327 COG4598 HisP ABC-type histidin 100.0 7.1E-32 1.5E-36 251.7 10.8 169 449-630 6-195 (256)
328 COG4161 ArtP ABC-type arginine 100.0 2.2E-31 4.8E-36 244.3 12.4 172 449-634 2-187 (242)
329 cd00267 ABC_ATPase ABC (ATP-bi 100.0 9.7E-31 2.1E-35 248.8 16.4 125 451-632 1-125 (157)
330 PRK10982 galactose/methyl gala 100.0 3E-31 6.5E-36 297.0 15.1 174 449-635 250-438 (491)
331 COG4136 ABC-type uncharacteriz 100.0 4.5E-31 9.7E-36 239.7 13.2 173 449-635 2-182 (213)
332 COG0444 DppD ABC-type dipeptid 100.0 5E-31 1.1E-35 269.7 15.0 176 450-635 2-200 (316)
333 PRK11819 putative ABC transpor 100.0 1.2E-30 2.6E-35 296.1 19.2 161 449-632 324-490 (556)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-30 2.6E-35 295.9 19.1 162 449-632 322-488 (552)
335 PRK15177 Vi polysaccharide exp 100.0 7.1E-31 1.5E-35 262.4 15.1 147 467-634 2-151 (213)
336 PRK15439 autoinducer 2 ABC tra 100.0 4.9E-31 1.1E-35 296.4 15.5 168 449-631 268-447 (510)
337 COG0411 LivG ABC-type branched 100.0 3.4E-31 7.4E-36 260.4 11.8 170 450-631 5-193 (250)
338 PLN03140 ABC transporter G fam 100.0 1.8E-30 3.9E-35 318.5 20.8 174 449-632 867-1064(1470)
339 COG4172 ABC-type uncharacteriz 100.0 2.8E-30 6E-35 267.1 18.2 178 448-636 275-474 (534)
340 PRK13409 putative ATPase RIL; 100.0 1.8E-30 3.9E-35 294.7 18.2 157 449-632 340-498 (590)
341 TIGR01187 potA spermidine/putr 100.0 1E-30 2.2E-35 277.3 13.6 139 483-632 1-145 (325)
342 PRK11147 ABC transporter ATPas 100.0 3.4E-30 7.4E-35 296.4 18.9 159 449-631 319-484 (635)
343 cd03222 ABC_RNaseL_inhibitor T 100.0 2.4E-30 5.3E-35 250.3 14.7 114 453-633 4-117 (177)
344 KOG0064 Peroxisomal long-chain 100.0 2E-26 4.4E-31 244.6 44.0 426 187-633 170-658 (728)
345 PLN03073 ABC transporter F fam 100.0 5.4E-30 1.2E-34 295.9 18.1 162 448-632 507-672 (718)
346 PRK10636 putative ABC transpor 100.0 1E-29 2.2E-34 292.2 18.4 160 449-632 312-475 (638)
347 COG3845 ABC-type uncharacteriz 100.0 4E-29 8.7E-34 266.0 17.1 175 449-634 4-186 (501)
348 COG1119 ModF ABC-type molybden 100.0 2.2E-29 4.8E-34 247.6 13.6 168 449-630 31-214 (257)
349 PRK10636 putative ABC transpor 100.0 5.8E-29 1.2E-33 285.9 18.4 165 450-631 2-193 (638)
350 TIGR00956 3a01205 Pleiotropic 100.0 3.4E-29 7.3E-34 308.0 15.0 160 465-632 74-254 (1394)
351 COG1101 PhnK ABC-type uncharac 100.0 6.2E-29 1.3E-33 238.7 13.1 165 464-630 18-191 (263)
352 PRK13409 putative ATPase RIL; 100.0 2.3E-29 5.1E-34 285.6 11.6 162 454-631 78-256 (590)
353 KOG0061 Transporter, ABC super 100.0 1.6E-28 3.4E-33 279.6 16.1 178 447-635 23-217 (613)
354 PRK11147 ABC transporter ATPas 100.0 3.5E-28 7.6E-33 279.8 17.2 164 450-631 4-200 (635)
355 COG4133 CcmA ABC-type transpor 100.0 1.2E-28 2.7E-33 232.6 10.9 168 450-630 3-173 (209)
356 COG4604 CeuD ABC-type enteroch 100.0 1E-28 2.2E-33 234.1 9.7 169 450-630 2-178 (252)
357 PF00664 ABC_membrane: ABC tra 100.0 1.1E-24 2.4E-29 220.2 39.5 270 135-404 2-275 (275)
358 PLN03140 ABC transporter G fam 100.0 1.3E-28 2.7E-33 302.3 12.3 165 465-632 178-381 (1470)
359 cd03238 ABC_UvrA The excision 100.0 7.7E-28 1.7E-32 232.6 14.7 124 464-632 7-134 (176)
360 COG4167 SapF ABC-type antimicr 99.9 8.7E-28 1.9E-32 224.9 10.7 173 450-632 5-194 (267)
361 COG0488 Uup ATPase components 99.9 6.6E-27 1.4E-31 259.8 17.3 163 449-630 3-196 (530)
362 PLN03073 ABC transporter F fam 99.9 4.9E-27 1.1E-31 271.5 14.3 179 448-631 176-388 (718)
363 COG4778 PhnL ABC-type phosphon 99.9 1.7E-26 3.7E-31 214.0 8.9 175 449-631 4-196 (235)
364 COG4172 ABC-type uncharacteriz 99.9 7E-26 1.5E-30 234.6 13.8 177 449-635 6-204 (534)
365 COG0488 Uup ATPase components 99.9 6.4E-25 1.4E-29 244.0 20.8 163 448-632 320-484 (530)
366 COG4152 ABC-type uncharacteriz 99.9 1.8E-25 3.9E-30 218.6 10.9 171 449-632 2-175 (300)
367 COG0396 sufC Cysteine desulfur 99.9 1.4E-24 3E-29 211.4 16.5 177 449-636 3-192 (251)
368 COG4674 Uncharacterized ABC-ty 99.9 6.6E-25 1.4E-29 208.0 10.7 174 449-635 5-194 (249)
369 cd03278 ABC_SMC_barmotin Barmo 99.9 8.9E-25 1.9E-29 215.7 11.0 135 469-631 14-161 (197)
370 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.2E-23 2.5E-28 210.4 9.3 161 449-634 5-179 (213)
371 cd03270 ABC_UvrA_I The excisio 99.9 1.6E-23 3.4E-28 211.3 10.0 152 465-632 8-184 (226)
372 COG1134 TagH ABC-type polysacc 99.9 9.6E-23 2.1E-27 201.1 14.8 146 465-630 40-190 (249)
373 COG4107 PhnK ABC-type phosphon 99.9 9.5E-23 2.1E-27 189.8 13.0 170 449-630 6-194 (258)
374 COG4586 ABC-type uncharacteriz 99.9 3.8E-23 8.2E-28 205.4 10.8 158 465-630 37-199 (325)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.3E-23 4.9E-28 212.2 9.3 162 449-632 3-207 (243)
376 cd03271 ABC_UvrA_II The excisi 99.9 3.6E-23 7.7E-28 211.8 9.9 157 466-635 9-219 (261)
377 KOG0927 Predicted transporter 99.9 2.4E-22 5.3E-27 215.3 10.0 164 449-630 389-552 (614)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.8E-22 6.1E-27 205.4 9.6 153 478-632 25-215 (251)
379 KOG0059 Lipid exporter ABCA1 a 99.9 8.1E-22 1.8E-26 233.8 14.8 174 448-632 563-743 (885)
380 KOG0065 Pleiotropic drug resis 99.8 2.5E-21 5.3E-26 225.9 12.0 158 465-632 804-975 (1391)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.8 6.7E-22 1.4E-26 197.4 5.6 157 449-632 5-176 (212)
382 cd03240 ABC_Rad50 The catalyti 99.8 6.1E-21 1.3E-25 189.4 9.8 133 472-631 17-166 (204)
383 COG1129 MglA ABC-type sugar tr 99.8 7.4E-19 1.6E-23 191.4 14.2 173 449-630 263-444 (500)
384 KOG0066 eIF2-interacting prote 99.8 4.3E-19 9.3E-24 185.1 11.4 158 449-632 586-749 (807)
385 COG3845 ABC-type uncharacteriz 99.8 1E-18 2.2E-23 186.8 13.2 175 448-633 256-449 (501)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.7E-19 8.1E-24 181.9 9.4 154 479-632 23-204 (247)
387 PRK00635 excinuclease ABC subu 99.8 1.2E-18 2.7E-23 213.0 14.2 169 449-635 600-859 (1809)
388 COG4138 BtuD ABC-type cobalami 99.8 1.8E-19 3.9E-24 168.2 3.5 159 450-627 4-172 (248)
389 KOG0927 Predicted transporter 99.7 5.2E-18 1.1E-22 182.3 11.5 175 446-630 72-264 (614)
390 PRK00349 uvrA excinuclease ABC 99.7 6.9E-18 1.5E-22 198.7 13.3 49 586-635 829-880 (943)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.7 4.6E-18 1E-22 168.0 9.4 139 468-633 12-159 (198)
392 cd00820 PEPCK_HprK Phosphoenol 99.7 2E-18 4.3E-23 152.0 5.9 75 466-548 3-77 (107)
393 KOG0062 ATPase component of AB 99.7 6.7E-18 1.5E-22 180.5 9.7 160 447-630 78-241 (582)
394 KOG0062 ATPase component of AB 99.7 1.1E-17 2.3E-22 178.9 9.7 164 448-631 361-526 (582)
395 COG1245 Predicted ATPase, RNas 99.7 6.4E-17 1.4E-21 170.6 11.7 152 454-630 340-498 (591)
396 TIGR00630 uvra excinuclease AB 99.7 1.3E-16 2.9E-21 187.6 14.3 52 583-635 822-878 (924)
397 KOG2355 Predicted ABC-type tra 99.7 8.2E-16 1.8E-20 147.3 12.3 168 447-633 11-193 (291)
398 cd03239 ABC_SMC_head The struc 99.6 6.9E-16 1.5E-20 149.9 11.1 57 572-632 83-143 (178)
399 KOG0065 Pleiotropic drug resis 99.6 2.8E-16 6E-21 184.1 9.1 161 465-631 128-304 (1391)
400 COG2401 ABC-type ATPase fused 99.6 5.6E-16 1.2E-20 161.7 10.2 166 445-630 353-550 (593)
401 cd03280 ABC_MutS2 MutS2 homolo 99.6 2.1E-15 4.5E-20 149.4 10.2 114 468-636 17-139 (200)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.6 4.1E-15 8.9E-20 148.6 10.4 150 469-633 15-176 (213)
403 cd03283 ABC_MutS-like MutS-lik 99.5 5.4E-15 1.2E-19 146.2 6.3 122 465-636 14-136 (199)
404 COG4170 SapD ABC-type antimicr 99.5 1.6E-14 3.4E-19 138.8 9.2 160 465-634 20-204 (330)
405 cd03241 ABC_RecN RecN ATPase i 99.5 3.7E-14 8E-19 147.5 12.0 46 587-632 170-219 (276)
406 cd03242 ABC_RecF RecF is a rec 99.5 9.2E-14 2E-18 144.0 11.6 160 468-631 12-236 (270)
407 cd03227 ABC_Class2 ABC-type Cl 99.5 1E-13 2.2E-18 132.7 10.9 109 472-634 15-128 (162)
408 COG1245 Predicted ATPase, RNas 99.5 5.9E-14 1.3E-18 148.4 7.8 159 454-630 79-256 (591)
409 cd01128 rho_factor Transcripti 99.5 6.1E-14 1.3E-18 142.9 7.2 142 472-625 10-173 (249)
410 TIGR00606 rad50 rad50. This fa 99.4 1.8E-13 4E-18 169.4 10.3 91 537-632 1153-1250(1311)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.4 1.5E-13 3.2E-18 138.2 7.5 110 465-625 17-132 (222)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.4 7.4E-13 1.6E-17 131.4 8.5 123 465-636 16-139 (204)
413 PTZ00132 GTP-binding nuclear p 99.4 1.6E-12 3.4E-17 129.9 10.0 142 480-632 11-202 (215)
414 cd03243 ABC_MutS_homologs The 99.4 2E-12 4.3E-17 128.2 9.5 120 466-636 19-139 (202)
415 PRK00635 excinuclease ABC subu 99.3 2E-11 4.3E-16 150.6 12.0 57 578-636 1689-1750(1809)
416 COG0178 UvrA Excinuclease ATPa 99.2 4.1E-11 9E-16 134.9 11.5 48 587-635 822-872 (935)
417 PRK00064 recF recombination pr 99.2 1.5E-10 3.3E-15 124.8 14.2 45 587-631 273-326 (361)
418 TIGR02858 spore_III_AA stage I 99.2 7.3E-11 1.6E-15 121.8 10.2 67 479-545 112-179 (270)
419 KOG0063 RNAse L inhibitor, ABC 99.2 1.5E-10 3.2E-15 122.0 11.8 147 457-628 343-497 (592)
420 TIGR03238 dnd_assoc_3 dnd syst 99.1 3E-11 6.4E-16 131.1 4.9 67 466-535 20-87 (504)
421 PF06472 ABC_membrane_2: ABC t 99.1 3.9E-07 8.4E-12 95.1 35.3 207 144-351 39-250 (281)
422 TIGR00767 rho transcription te 99.1 1.5E-10 3.3E-15 123.8 9.6 83 416-505 102-195 (415)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.1 3.4E-10 7.3E-15 113.3 10.9 120 466-635 17-138 (213)
424 TIGR01069 mutS2 MutS2 family p 99.1 3.1E-10 6.7E-15 132.8 12.3 137 449-636 295-433 (771)
425 cd03284 ABC_MutS1 MutS1 homolo 99.1 1.7E-10 3.6E-15 115.7 8.0 36 466-502 19-54 (216)
426 PRK11098 microcin B17 transpor 99.1 1.5E-06 3.2E-11 94.3 38.5 249 166-430 133-395 (409)
427 PRK12369 putative transporter; 99.1 4.1E-06 8.8E-11 89.0 39.4 250 168-430 60-321 (326)
428 PF02463 SMC_N: RecF/RecN/SMC 99.1 2.9E-10 6.2E-15 114.0 7.3 46 587-632 136-185 (220)
429 KOG0066 eIF2-interacting prote 99.0 7.1E-10 1.5E-14 116.9 9.4 162 449-622 264-447 (807)
430 PRK00300 gmk guanylate kinase; 98.9 4.9E-10 1.1E-14 111.1 3.6 127 476-612 3-168 (205)
431 smart00534 MUTSac ATPase domai 98.9 9.4E-10 2E-14 107.6 5.1 48 586-636 60-109 (185)
432 PRK14079 recF recombination pr 98.9 1E-08 2.2E-13 110.2 12.8 44 587-630 263-315 (349)
433 PRK06793 fliI flagellum-specif 98.9 5.6E-09 1.2E-13 113.8 8.6 127 449-623 130-264 (432)
434 TIGR00630 uvra excinuclease AB 98.8 7.5E-09 1.6E-13 122.7 9.1 49 586-635 486-536 (924)
435 PRK10733 hflB ATP-dependent me 98.8 1.2E-10 2.5E-15 134.5 -6.3 168 303-504 36-211 (644)
436 cd03287 ABC_MSH3_euk MutS3 hom 98.8 1.3E-08 2.8E-13 102.3 9.2 47 465-511 18-65 (222)
437 PRK06002 fliI flagellum-specif 98.8 8.5E-09 1.8E-13 112.5 7.6 85 448-535 138-229 (450)
438 PRK00349 uvrA excinuclease ABC 98.8 1.3E-08 2.9E-13 120.8 9.5 49 586-635 488-538 (943)
439 KOG0063 RNAse L inhibitor, ABC 98.8 5.2E-09 1.1E-13 110.6 5.2 140 476-630 98-256 (592)
440 PRK07721 fliI flagellum-specif 98.8 4.8E-08 1.1E-12 107.2 12.6 137 465-630 146-292 (438)
441 PRK08533 flagellar accessory p 98.7 7.7E-08 1.7E-12 97.4 12.0 52 449-512 7-59 (230)
442 PRK01889 GTPase RsgA; Reviewed 98.7 5.9E-09 1.3E-13 112.2 3.7 133 467-605 184-321 (356)
443 PF13748 ABC_membrane_3: ABC t 98.7 5.6E-05 1.2E-09 75.3 30.8 169 126-305 4-172 (237)
444 PRK00409 recombination and DNA 98.7 2.6E-08 5.6E-13 117.1 8.7 122 466-636 316-438 (782)
445 smart00382 AAA ATPases associa 98.7 2.6E-07 5.7E-12 83.5 12.6 98 477-628 1-101 (148)
446 PHA02562 46 endonuclease subun 98.7 1.8E-08 3.9E-13 115.2 4.9 72 558-630 432-522 (562)
447 PRK07196 fliI flagellum-specif 98.6 2.6E-08 5.7E-13 108.6 5.0 81 466-547 144-234 (434)
448 TIGR02788 VirB11 P-type DNA tr 98.6 1.2E-07 2.6E-12 100.3 9.7 49 471-521 137-185 (308)
449 TIGR02524 dot_icm_DotB Dot/Icm 98.6 4.8E-08 1E-12 105.0 6.6 89 476-566 132-234 (358)
450 cd01130 VirB11-like_ATPase Typ 98.6 5.5E-08 1.2E-12 95.2 5.7 79 467-548 14-95 (186)
451 PRK08149 ATP synthase SpaL; Va 98.6 1.1E-07 2.3E-12 103.8 7.6 69 466-535 140-215 (428)
452 PRK06995 flhF flagellar biosyn 98.5 8.6E-08 1.9E-12 106.0 4.3 60 470-548 248-307 (484)
453 PRK09825 idnK D-gluconate kina 98.4 1.9E-07 4.2E-12 90.6 4.5 67 477-549 2-70 (176)
454 PRK10078 ribose 1,5-bisphospho 98.4 2.8E-07 6.1E-12 90.2 5.6 56 477-535 1-56 (186)
455 cd01131 PilT Pilus retraction 98.4 3.5E-07 7.6E-12 90.5 6.1 82 480-567 3-97 (198)
456 TIGR03263 guanyl_kin guanylate 98.4 1.6E-07 3.6E-12 90.9 3.6 78 478-565 1-90 (180)
457 cd01120 RecA-like_NTPases RecA 98.4 6.4E-07 1.4E-11 84.1 7.1 101 480-622 1-102 (165)
458 cd03286 ABC_MSH6_euk MutS6 hom 98.4 1.9E-06 4.2E-11 86.4 10.0 123 465-636 17-140 (218)
459 cd02023 UMPK Uridine monophosp 98.4 3.7E-07 8.1E-12 90.0 4.7 109 480-621 1-114 (198)
460 cd00071 GMPK Guanosine monopho 98.3 2.3E-07 5.1E-12 86.2 2.7 73 481-563 2-87 (137)
461 PLN02796 D-glycerate 3-kinase 98.3 2.2E-07 4.8E-12 98.2 2.5 61 466-526 80-151 (347)
462 PRK13695 putative NTPase; Prov 98.3 1.1E-06 2.3E-11 85.0 6.5 43 587-629 78-122 (174)
463 PF13304 AAA_21: AAA domain; P 98.3 1.2E-06 2.6E-11 87.5 6.8 44 587-630 236-282 (303)
464 PRK15494 era GTPase Era; Provi 98.3 5.4E-07 1.2E-11 96.5 4.4 56 444-501 13-75 (339)
465 PRK10869 recombination and rep 98.3 9.2E-07 2E-11 100.5 6.5 45 587-631 430-478 (553)
466 TIGR02322 phosphon_PhnN phosph 98.3 1.4E-06 2.9E-11 84.5 6.7 63 478-541 1-79 (179)
467 PRK06315 type III secretion sy 98.3 6.8E-07 1.5E-11 97.9 4.9 101 466-568 153-276 (442)
468 PRK05480 uridine/cytidine kina 98.3 1.3E-06 2.7E-11 87.1 6.4 69 476-565 4-77 (209)
469 TIGR00235 udk uridine kinase. 98.3 4.2E-07 9.1E-12 90.4 2.8 29 476-504 4-32 (207)
470 TIGR00634 recN DNA repair prot 98.3 1.1E-06 2.5E-11 100.4 6.4 45 587-631 440-488 (563)
471 PF05992 SbmA_BacA: SbmA/BacA- 98.2 0.01 2.2E-07 61.9 36.6 236 178-428 63-311 (315)
472 TIGR02903 spore_lon_C ATP-depe 98.2 2.8E-06 6E-11 97.9 9.2 106 478-630 175-289 (615)
473 PRK03846 adenylylsulfate kinas 98.2 8.3E-07 1.8E-11 87.7 4.0 56 476-535 22-78 (198)
474 PRK06067 flagellar accessory p 98.1 1E-05 2.2E-10 82.1 10.1 111 474-626 21-141 (234)
475 TIGR03497 FliI_clade2 flagella 98.1 2.1E-06 4.6E-11 93.8 5.0 54 465-519 125-178 (413)
476 cd01124 KaiC KaiC is a circadi 98.1 1.2E-05 2.6E-10 78.1 9.4 48 586-634 70-126 (187)
477 cd01876 YihA_EngB The YihA (En 98.1 6.8E-06 1.5E-10 77.2 7.3 43 587-633 122-169 (170)
478 PRK07960 fliI flagellum-specif 98.1 4.3E-06 9.3E-11 91.5 5.7 99 467-583 165-269 (455)
479 PRK01156 chromosome segregatio 98.1 5.2E-06 1.1E-10 100.2 6.9 46 586-631 800-851 (895)
480 cd01136 ATPase_flagellum-secre 98.0 4.3E-06 9.3E-11 88.5 5.0 54 465-519 57-110 (326)
481 PRK10416 signal recognition pa 98.0 3.2E-06 6.9E-11 89.6 3.9 72 476-547 112-190 (318)
482 PRK09270 nucleoside triphospha 98.0 5E-06 1.1E-10 84.1 5.1 56 476-535 31-90 (229)
483 TIGR00101 ureG urease accessor 98.0 9.8E-06 2.1E-10 80.3 6.8 57 480-537 3-59 (199)
484 PRK00454 engB GTP-binding prot 98.0 2.2E-06 4.8E-11 83.8 2.2 46 587-636 147-195 (196)
485 PRK09862 putative ATP-dependen 98.0 5E-06 1.1E-10 92.8 4.8 65 452-519 187-251 (506)
486 PRK09518 bifunctional cytidyla 98.0 3.5E-06 7.5E-11 99.0 3.6 64 479-547 2-118 (712)
487 TIGR02546 III_secr_ATP type II 98.0 5.2E-06 1.1E-10 91.2 4.7 55 465-520 133-187 (422)
488 PRK13830 conjugal transfer pro 98.0 2.5E-05 5.5E-10 93.0 10.9 35 470-504 448-482 (818)
489 PRK07594 type III secretion sy 98.0 3.8E-06 8.2E-11 91.9 3.6 69 448-519 128-196 (433)
490 TIGR02168 SMC_prok_B chromosom 98.0 7.1E-06 1.5E-10 101.6 6.2 45 587-631 1089-1137(1179)
491 PF13558 SbcCD_C: Putative exo 98.0 1.6E-05 3.4E-10 68.4 6.1 45 586-630 31-88 (90)
492 PRK13891 conjugal transfer pro 98.0 0.00018 3.8E-09 86.2 17.0 36 598-634 680-716 (852)
493 cd04104 p47_IIGP_like p47 (47- 97.9 2E-05 4.4E-10 77.8 7.2 110 480-611 3-114 (197)
494 PRK03918 chromosome segregatio 97.9 1.1E-05 2.4E-10 97.3 6.4 45 587-631 788-838 (880)
495 TIGR01420 pilT_fam pilus retra 97.9 5.4E-05 1.2E-09 81.3 10.5 41 475-515 119-160 (343)
496 PRK10246 exonuclease subunit S 97.9 1.4E-05 3E-10 97.7 6.4 48 587-635 949-1004(1047)
497 cd02026 PRK Phosphoribulokinas 97.9 1.1E-05 2.4E-10 83.8 4.6 54 480-535 1-54 (273)
498 PLN02318 phosphoribulokinase/u 97.9 1.1E-05 2.4E-10 90.3 4.8 61 479-547 66-127 (656)
499 TIGR00618 sbcc exonuclease Sbc 97.9 1.5E-05 3.2E-10 97.8 6.2 47 587-634 950-1006(1042)
500 TIGR03498 FliI_clade3 flagella 97.9 9.1E-06 2E-10 88.8 3.8 54 466-520 129-182 (418)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-116 Score=962.42 Aligned_cols=515 Identities=39% Similarity=0.644 Sum_probs=487.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (637)
Q Consensus 118 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~-~~~~~~~~~~l~~l~~~~~v~~~i~~~~~ 195 (637)
..++|+++|++|+++++..++++++++++.++.+|.++++.++.... .+ ...+.+....+.++.++.+++.++|.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999988876544 22 23455666677778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006650 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (637)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~l 275 (637)
..+++++..++|.++|+++++|+++|||.+++||++||+++|++.+.+.++..++..+++.++.++++++|+++||+|++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (637)
Q Consensus 276 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (637)
++++.+|++.++.++|+++.+++.++.|++.++.+++++|.+++++|||+|++|++|.+||.+..++.++...|.+..++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 006650 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (637)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~ 435 (637)
.+....++......+.++++|++++..|+||.|++++|++|..++..++..++..+++++++++|.+|+||++|++|..+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 99888888888888999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCccccccc-cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 006650 436 FLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (637)
Q Consensus 436 ~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 514 (637)
.. |...| ...|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||+|++|+|++||+
T Consensus 453 ~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 453 LT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred CC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 33 44333 5779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHH
Q 006650 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 592 (637)
Q Consensus 515 di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQ 592 (637)
||+++++++||++||+|.|||.||++||+|||+||+ ++++||||++||++|++||||.++|+||||.|||+ +|||||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~-~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL-DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 999999999999999999999999999999999996 59999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
||||||||||+|||.||||||||||||+|+|..||+++ +.+++
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL-~~~~~ 652 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL-DRLMQ 652 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH-HHhhc
Confidence 99999999999999999999999999999999999995 76665
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.3e-96 Score=832.06 Aligned_cols=513 Identities=28% Similarity=0.410 Sum_probs=469.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (637)
Q Consensus 119 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~ 197 (637)
.+.|+++.+.+|++.+.-.++..++..+++++.|++....+|..... +...+......++++++...++..+|.+...+
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~ 220 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAH 220 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999887777654221 22222222233444555667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006650 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (637)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~ 277 (637)
.+.++..++...+|+|++++|++||+++++||+++|+ +|.+.|+++++..+..++.+++++++.+++|++|||+|++++
T Consensus 221 ~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 221 LGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (637)
Q Consensus 278 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (637)
++.+|++.++..++.+..++..++..+..++.++.+.|++.|+++||+.+.|++...+|++...+..+.+.+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 006650 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (637)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~ 437 (637)
+....++..+..++++|+|+++|++|++|+|+++||.++...+..|+..+.+.+.++.+...+.+|+.++++.++|.+..
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 77778888889999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred ccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 006650 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (637)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 517 (637)
......+...|+|+|+||+|+|+.++ .++|+|+||+|+|||+|||||+||||||||+|||+|+|+|++|+|++||+|+.
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 21234456779999999999998653 47999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHH
Q 006650 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (637)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQR 595 (637)
+++.+++|++||||+||++||+|||+|||++| ++++++||+++||+.|++||||.+||.||||.|||+ +||||||||
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALG-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 578999999999999999999999999999999994 999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|||||||++||+||||||||||||++||++|.+++.+..
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999976544
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-96 Score=846.46 Aligned_cols=517 Identities=34% Similarity=0.500 Sum_probs=450.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV--FSAQREEAMV--FHKSSRFLVLLCVTSGIFSGLRSG 193 (637)
Q Consensus 118 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i--~~~~~~~~~~--~~~~~~~l~~l~~~~~v~~~i~~~ 193 (637)
..+.+++++.+|+|+.+++++++.++.....-...+++...+ +.....+... ...+..++++++++.++..+++.+
T Consensus 650 ~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~ 729 (1228)
T KOG0055|consen 650 VSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHY 729 (1228)
T ss_pred ccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999888766665554333333333332 2211111111 111333445566677788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006650 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTE-AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (637)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~-~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~ 272 (637)
++...++++..|+|...|+++++++.+|||.. ++|.+.+|+.+|...++.++...+..+++++..+++++++.|+++|+
T Consensus 730 ~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 730 FFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984 45999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (637)
Q Consensus 273 l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (637)
|+++++...|++.+......++......+.++..++.++.+.|+++++|||++|++|++..+.|.+.+++..+...|.+.
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~ 889 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGL 889 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006650 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (637)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~ 432 (637)
..++.....+.+.....++.+|+|++++..|.+++.+++-.......-...+........++.++..|+.++|+++|++|
T Consensus 890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~ 969 (1228)
T KOG0055|consen 890 ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence 88887777777777888899999999999999999987654433322233334445567888999999999999999998
Q ss_pred CCCCC-ccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 433 SNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 433 ~~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
..+.. +.+...+...|+|+|+||+|+||.||+.+||+|+||+|++||++||||||||||||++.||.|||||++|.|.|
T Consensus 970 ~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~I 1049 (1228)
T KOG0055|consen 970 TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKI 1049 (1228)
T ss_pred CCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 64432 23333456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCC
Q 006650 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (637)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LS 589 (637)
||+|++++++++||++||+|+|||.||++||||||+|| .++++++||.+|||.|++|+||.+||+||||.|||+ +||
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 99999999999999999999999999999999999999 445999999999999999999999999999999994 999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
|||||||||||||+|||+||+|||||||||+|||+.||++ +|++++
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeA-Ld~a~~ 1174 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA-LDRAME 1174 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHH-HHHhhc
Confidence 9999999999999999999999999999999999999999 587764
No 4
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.3e-92 Score=820.67 Aligned_cols=577 Identities=34% Similarity=0.491 Sum_probs=496.9
Q ss_pred cccccccchhhhhhcCCCCCCCCccchhhhhhhHHHHHHHhhcCCCCccccccCCcccCCCC-CCCccHHHHHHHHHHHH
Q 006650 49 KRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPT-AKPITVWIALSRMWNLI 127 (637)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 127 (637)
+|+..|.|.+......... +.......++.|...+++|+.+......|+.+.+...++... .++.+.+..++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (711)
T TIGR00958 78 LCLATPSLSSLRALAFWEA-LDPAVRVALGLWSWFVWSYGAALPAAALWAVLSSAGASEKEAEQGQSETADLLFRLLGLS 156 (711)
T ss_pred HHHHHHHHHHHHHHHccCC-CccccccccccHHHHHHHHHHHHHHHHHHHhhCCccccccccccccchhhhHHHHHHHHH
Confidence 8999999987765543221 113333578889999999998877666787775431111000 11223446788999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (637)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~l 206 (637)
+++++.+..++++.++++++.+..|++.+..++.... .+...+.....++.+++++..++.+++.++....+.++..++
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 236 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRI 236 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888765431 122223333334444555667778888888888999999999
Q ss_pred HHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006650 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286 (637)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~ 286 (637)
|.++|++++++|++||++.++|++++|+++|++.+++.+...+..++.+++.+++++++|+.++|++++++++.+|+.++
T Consensus 237 r~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~ 316 (711)
T TIGR00958 237 REDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFL 316 (711)
T ss_pred HHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYR 366 (637)
Q Consensus 287 i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (637)
+..+++++.++..++.++..++.++.+.|.++|+++||.|+.|+.+.++|++..++..+...+.....+........+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (711)
T TIGR00958 317 AEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGM 396 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887776665555444444555
Q ss_pred HHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccC
Q 006650 367 STQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRL 446 (637)
Q Consensus 367 ~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~ 446 (637)
...++++++|++++.+|++|+|++++++.|..++..|+..+...+.++.++..+.+|++++++.+++.+... ...+.+.
T Consensus 397 ~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~ 475 (711)
T TIGR00958 397 LIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG-TLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCC
Confidence 566778889999999999999999999999999999999999999999999999999999999876543211 1122234
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.++|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 56899999999999765568999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcC
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 604 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk 604 (637)
+|+||+|||+||+|||||||+||+ ++++||++++|++.+++++||+++|+||||.+||+ +||||||||||||||++|
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999994 57899999999999999999999999999999984 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKA 628 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~ 628 (637)
||+|||||||||+||+++|++|++
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHH
Confidence 999999999999999999999998
No 5
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.7e-91 Score=784.75 Aligned_cols=508 Identities=24% Similarity=0.273 Sum_probs=436.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 006650 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF--LVLLCVTSGIFSGLRSGCFSIA 198 (637)
Q Consensus 121 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~--l~~l~~~~~v~~~i~~~~~~~~ 198 (637)
++++++.+++++.++..+++.++.+++.+..|+++...++.....+. .......+ +.++.++..++.+++.++....
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999888889999999999999988877764322111 11100011 1122334455667777788888
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006650 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (637)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l 278 (637)
..++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|.++++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 160 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999988888899999899999999999999999998
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 279 LICSFLSIIVSVY-GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (637)
Q Consensus 279 ~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (637)
+++|++.++...+ .+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8878776665444 344456667777888999999999999999999999999999999999999999888877666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 006650 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (637)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~ 437 (637)
......+.....++++++|++++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 55555555566677788999999999999999999999999999999999999999999999999999999876643221
Q ss_pred ccc--cccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 006650 438 SEG--VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (637)
Q Consensus 438 ~~~--~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 515 (637)
... ....+..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|||+|+|+|++|+|++||+|
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 111 1111234579999999999854 369999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHH
Q 006650 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (637)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQk 593 (637)
++++ .+++|++|+||||||+||+|||+|||++|+ ++++||++++||+.|+++|||++||+||||.|||+ +||||||
T Consensus 399 i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 399 VSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred hhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 9999 999999999999999999999999999994 68999999999999999999999999999999984 8999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||||||||++|||||||||||||||++||++|++++.+.
T Consensus 477 QRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997643
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-89 Score=782.40 Aligned_cols=509 Identities=20% Similarity=0.251 Sum_probs=432.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ--REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (637)
Q Consensus 119 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~--~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~ 196 (637)
.++|++++++|+++.+++++++.++..++.+..|+++...++... ..+..........++++.++..++.+++.++..
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999998888776432 111111111122233344455666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006650 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (637)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv 276 (637)
..+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++.+...+..++..++.+++++++|++++|+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (637)
Q Consensus 277 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (637)
+++++|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888899999999999999999999999999999999999999998888776655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQL 427 (637)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l---------~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ 427 (637)
.......+.....+++++++++.+ .|.+|+|++ ++++++...+..|+..++..+..+.++..+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444344444445565544 488888764 2333666778899999999999999999999999999
Q ss_pred hhcCCCCCCCccccccc-cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 006650 428 IDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (637)
Q Consensus 428 ld~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~ 506 (637)
++.+++... ......+ ...++|+|+||+|.|+++ +++|+|+||+|+|||++||||+||||||||++||+|+| |++
T Consensus 328 l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccC-CCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 987654221 1111111 123579999999988643 47999999999999999999999999999999999999 999
Q ss_pred ceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC
Q 006650 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (637)
Q Consensus 507 G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~ 586 (637)
|+|++||+|+++++.+++|++|+||||||+||+|||+|||+||+ ++++|||+++||+.|+++|||++||+||||.|||+
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 99999999999999999999999999999999999999999994 68999999999999999999999999999999994
Q ss_pred --CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 587 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 587 --~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
+|||||||||||||||++||+||||||||||||++||++|++++.+.
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987544
No 7
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3e-87 Score=761.19 Aligned_cols=505 Identities=35% Similarity=0.559 Sum_probs=444.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (637)
Q Consensus 119 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~ 198 (637)
.+++++++.+ ++ .+.+++++.++..+..+..|.++...++... .+.........++.++.++.+++.++..++..+.
T Consensus 3 ~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 79 (567)
T COG1132 3 LLRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRL 79 (567)
T ss_pred hHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777 77 8888888889999999999998887775543 1111222223333344445566666777777777
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006650 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (637)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l 278 (637)
+.++..++|..+|++++++|+++|++.++|++++|+++|++.++..+......+...++.+++.+++++..+|.++++++
T Consensus 80 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 159 (567)
T COG1132 80 GQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILL 159 (567)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999888666666788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (637)
Q Consensus 279 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (637)
+..|++.++...+.++.++..+..++..++.++.+.|.++|+++||+|+.++.+.+++++..++..+...+.....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (567)
T COG1132 160 LILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLA 239 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777888899999999999999999999999999999999999999999988888877666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 006650 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (637)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~ 438 (637)
.....+.....++++++|++.+..|.+++|++++|+.|...+..|+..+...+..+..+..+.+|++++++.+++..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 319 (567)
T COG1132 240 PLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP 319 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence 66666667778888999999999999999999999999999999999999999999999999999999999877543322
Q ss_pred cccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 006650 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (637)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 518 (637)
.. .....++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||++||+|||+|++|+|++||+|+++
T Consensus 320 ~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~ 395 (567)
T COG1132 320 DP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD 395 (567)
T ss_pred CC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhh
Confidence 21 2334578999999999985 2479999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHH
Q 006650 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRI 596 (637)
++.++||++|++||||++||+|||+|||+||+ ++++|||+++||++|++||||+++|+||||.|||+ +|||||||||
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrl 474 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGR-PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHH
Confidence 99999999999999999999999999999995 57999999999999999999999999999999984 8999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||||++|||||||||||||+||++||+.|++++.
T Consensus 475 aiARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 475 AIARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred HHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 99999999999999999999999999999999974
No 8
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.1e-87 Score=780.82 Aligned_cols=541 Identities=23% Similarity=0.300 Sum_probs=461.4
Q ss_pred hhhhhhHHHHHHHhhcCCCCccccccCCcccCCCCCCCccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 76 KFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL 155 (637)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l 155 (637)
...+....+-+++..++|++.+.+.. + ++ ..+++++++++++++.+..++++.++..++.+..|+++
T Consensus 113 ~~~ef~~~~~g~~l~~~~~~~~~~~~-----~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 179 (708)
T TIGR01193 113 SKEDFYEEWTGIAIFISPTPEYKPIK-----E----KE----NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYL 179 (708)
T ss_pred cHHHHHhhCCCEEEEEEecccccccc-----c----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666665443210 0 11 23678899999999999999888999999999999988
Q ss_pred HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHH
Q 006650 156 AEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234 (637)
Q Consensus 156 ~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl 234 (637)
...++..... +...+......++++.++..++.+++.++..+.+.++..++|.++|+|++++|+.+|+++++|++++|+
T Consensus 180 ~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~ 259 (708)
T TIGR01193 180 QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRF 259 (708)
T ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHh
Confidence 8877654221 111111111222333445566778888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQ 314 (637)
Q Consensus 235 ~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (637)
+ |.+.+++.+...+...+.+++.+++++++|++++|++++++++.+|+++++..++.++.++..++.++..++.++.+.
T Consensus 260 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (708)
T TIGR01193 260 T-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSII 338 (708)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 999999988888877888888888888889999999999999999999999888989999999999999999999999
Q ss_pred HHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHH
Q 006650 315 ETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYV 394 (637)
Q Consensus 315 E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~ 394 (637)
|+++|+++||+||.|+.+.++|++..++..+...+.....+........+.....++++++|++++..|++|+|+++++.
T Consensus 339 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~ 418 (708)
T TIGR01193 339 EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFN 418 (708)
T ss_pred HHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999998888887766555544444555556677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEE
Q 006650 395 LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 474 (637)
Q Consensus 395 ~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~ 474 (637)
.+...+..|+..+...+..+.++..+.+|+.++++.+++.+........+...++|+|+||+|+|+++ .++|+|+||+
T Consensus 419 ~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~ 496 (708)
T TIGR01193 419 ALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG--SNILSDISLT 496 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEE
Confidence 99999999999999999999999999999999998776532211111122345789999999999743 4799999999
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~ 554 (637)
|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|||||||++||+|||+|||++|+++++
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~ 576 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENV 576 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999944579
Q ss_pred CHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 555 ~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+||++++||+.++++|||+++|+||||.|||+ +||||||||||||||+++||+|||||||||+||++||+.|++++.+
T Consensus 577 ~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 577 SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984 8999999999999999999999999999999999999999999864
No 9
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.2e-87 Score=774.20 Aligned_cols=510 Identities=25% Similarity=0.319 Sum_probs=448.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (637)
Q Consensus 119 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~ 197 (637)
.+++++++++++++.+...+++.++..++.+..|+++...++.... .+...+......++++.++..++.+++.++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 134 PKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668889999999999999999999999999999988877764321 111111111122223344456678888899999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006650 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (637)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~ 277 (637)
.+.++..++|..+|+|++++|+.| +++++|++++|+ +|++.+++.+...+...+.+++.+++++++|++++|.+++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999998 788999999999 799999999888887788888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (637)
Q Consensus 278 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (637)
++++|+++++..++.++.++..++..+..++.++.+.|+++|+++||.|+.|+.+.++|++..++..+...+........
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999999999999999999999999999999988888877666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 006650 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (637)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~ 437 (637)
......+.....++++++|++++.+|++|+|++++++.|...+..|+..+...+..+.++..+.+|+.++++.+++.+..
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 65556666667778889999999999999999999999999999999999999999999999999999999987653221
Q ss_pred ccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 006650 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (637)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 517 (637)
......+...++|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 452 ~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 452 TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530 (694)
T ss_pred CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 1111122345689999999999854 357999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHH
Q 006650 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (637)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQR 595 (637)
+++.+++|++|+|||||++||+|||+|||++++ +++++|++++|++.++++|+|+++|+||||.+||+ +||||||||
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 999999999999999999999999999999994 57999999999999999999999999999999984 899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||||++||+|||||||||+||++||++|++++.+
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999754
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.5e-86 Score=769.20 Aligned_cols=507 Identities=24% Similarity=0.302 Sum_probs=444.3
Q ss_pred HHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 120 LSRMWNL-IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (637)
Q Consensus 120 ~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~ 197 (637)
+++++++ ++++++.+...+++.++..++.+..|+++...++.... .+...+......++++.++..++.+++.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 67888999888899999999999999988877764421 111122212222333444556777888888889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006650 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (637)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~ 277 (637)
.+.++..++|..+|+|++++|+.||+++++|++++|++ |++.+++.+...+...+.+++..++++++|++++|.+++++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 89999999888887888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (637)
Q Consensus 278 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (637)
++++++++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++..++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888889999999999999999999999999999999999999999888877666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 006650 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (637)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~ 437 (637)
......+..+..++++++|++++.+|++|+|+++++..+..++..|+..+...+..+.++..+.+|+.++++.+++...
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~- 440 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE- 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-
Confidence 5555566667778889999999999999999999999999999999999999999999999999999999987665321
Q ss_pred ccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 006650 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (637)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 517 (637)
.........++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 441 -~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 441 -AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred -CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 111122335689999999999754 357999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHH
Q 006650 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (637)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQR 595 (637)
+++.+++|++|||||||++||+|||+|||++|+ + ++||++++||+.++++++|+++|+||||.+||+ +||||||||
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 999999999999999999999999999999994 4 899999999999999999999999999999984 899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||||++||+|||||||||+||++||++|.+++.+
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999754
No 11
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.2e-86 Score=814.68 Aligned_cols=510 Identities=27% Similarity=0.342 Sum_probs=427.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AM-VFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (637)
Q Consensus 119 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~-~~-~~~~~~~~l~~l~~~~~v~~~i~~~~~~ 196 (637)
.+++++++++++++.+++++++.++++++....|++++..++.....+ .. .......++++++++..++.+++.++..
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~ 891 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN 891 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999998888888888888888888988887765322111 00 1112233344455666777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006650 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (637)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~ 274 (637)
+.++++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++..++.++++++++++++|.++
T Consensus 892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~ 971 (1466)
T PTZ00265 892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVA 971 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 78999999999999999999998899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHH
Q 006650 275 LSALLICSFLSIIVSVYGQYQKRAS-VL-----------------TQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (637)
Q Consensus 275 lv~l~~~~l~~~i~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~ 336 (637)
++++++. +++...+.++.+... ++ .++..++.+..+.|+++|+++||+|+.|+.+.++|
T Consensus 972 l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~ 1048 (1466)
T PTZ00265 972 AVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLI 1048 (1466)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHH
Confidence 8765433 333444434332211 11 12335677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (637)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~ 416 (637)
++..++..+...+.....+.+......+.....++++|+|++++..|++|+|++++++.+......++..++..+..+.+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1128 (1466)
T PTZ00265 1049 EKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877766666666655655666788899999999999999999999886655444566677888889999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcc-ccc---cccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHH
Q 006650 417 SIGATEKVFQLIDLLPSNQFLSE-GVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (637)
Q Consensus 417 ~~~a~~ri~~~ld~~~~~~~~~~-~~~---~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKS 492 (637)
+..+++|++++++.+++.+..+. +.. .+...++|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||
T Consensus 1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 99999999999998764321111 111 12345789999999999976656899999999999999999999999999
Q ss_pred HHHHHHhcCCCC------------------------------------------------------CCceEEECCEeCCC
Q 006650 493 TFVNLLLRLYEP------------------------------------------------------SDGQIYIDGFPLTD 518 (637)
Q Consensus 493 TL~~LL~r~y~p------------------------------------------------------~~G~I~idG~di~~ 518 (637)
||++||+|||+| ++|+|++||+|+++
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~ 1288 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD 1288 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh
Confidence 999999999999 69999999999999
Q ss_pred CCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHH
Q 006650 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRI 596 (637)
++.++||++||||+|||+||+|||||||+||+ ++++|||+++||+.|++||||.+||+||||.|||+ +|||||||||
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999994 68999999999999999999999999999999984 8999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||+|||+||||||||||||++||+.|++++.+
T Consensus 1368 aIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1368 AIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999744
No 12
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-88 Score=783.55 Aligned_cols=511 Identities=33% Similarity=0.504 Sum_probs=437.6
Q ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh---h-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 120 LSRMWNLIGRDKW-IVLVAVASLIVAAVSEITMPRIL---AEAVFSA---Q-REEAMVFHKSSRFLVLLCVTSGIFSGLR 191 (637)
Q Consensus 120 ~~~l~~~~~~~~~-~l~~~~~~~~~~~~~~i~~P~~l---~~~i~~~---~-~~~~~~~~~~~~~l~~l~~~~~v~~~i~ 191 (637)
+..+++|..+..+ ++.+ +.+.+.+.++..|.+. +..++.. . ........+....+..+.++..+..+++
T Consensus 15 ~~~lf~~a~~~D~~Lm~~---G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q 91 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMIL---GSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQ 91 (1228)
T ss_pred hHHheeccchhhHHHHHH---HHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666644333 3334 4444555555666532 2222211 0 0000122233344455566666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006650 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (637)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw 271 (637)
..++.+.+++...++|...++.+++++++|||.+.+|++.+|+++|++.+++.+++.+..++..+.++++.+++.|++.|
T Consensus 92 ~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W 171 (1228)
T KOG0055|consen 92 VSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGW 171 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 006650 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (637)
Q Consensus 272 ~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (637)
+|+++++...|++.+....+.+...+...+.++..+++.+.+.|+++++|||.+|+.|+++.++|++.++...+...+.+
T Consensus 172 ~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g 251 (1228)
T KOG0055|consen 172 KLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKG 251 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006650 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (637)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~ 431 (637)
...++......++.....++.+|+|+.++..+..+.|+++........-...+......+..+..+..|+.++++.+|..
T Consensus 252 ~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~ 331 (1228)
T KOG0055|consen 252 LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRK 331 (1228)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCC
Confidence 88888887777777788889999999999999999998765443322222233344456677788889999999999998
Q ss_pred CCCCCCc-cccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 006650 432 PSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (637)
Q Consensus 432 ~~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~ 510 (637)
|..+... ++.......|+|||+||+|+||.|++.++|+|+||+||+||+|||||+|||||||+++||+|||+|++|+|+
T Consensus 332 ~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~ 411 (1228)
T KOG0055|consen 332 PSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL 411 (1228)
T ss_pred CCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE
Confidence 8654322 223334567899999999999999988999999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CC
Q 006650 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588 (637)
Q Consensus 511 idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~L 588 (637)
|||.|+++++.++||++||+|.|||.||++||+|||+|| ++++|++|+++|||+|++|+||.+||+||||.+||+ +|
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G-~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qL 490 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYG-KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQL 490 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcC-CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCC
Confidence 999999999999999999999999999999999999999 579999999999999999999999999999999996 79
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 589 SGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||||||||||||||+|||+||+|||||||||+++|+.||++| |..+
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~ 536 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKAS 536 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHhh
Confidence 999999999999999999999999999999999999999995 6554
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.7e-86 Score=770.80 Aligned_cols=541 Identities=22% Similarity=0.318 Sum_probs=461.3
Q ss_pred hhhhhhHHHHHHHhhcCCCCccccccCCcccCCCCCCCccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 76 KFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL 155 (637)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l 155 (637)
...+....+-+++..++|+..+... .+ ++ ..+++++++++++++.+...+++.++..++.+..|+++
T Consensus 111 ~~~e~~~~~~g~~l~~~~~~~~~~~-----~~----~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 177 (710)
T TIGR03796 111 SLEEFDESFTGVVLTFEPGPEFQKG-----GR----KP----SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFS 177 (710)
T ss_pred cHHHHHhhCCCeEEEEEECcccccc-----Cc----Cc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555666665433221 00 11 23668888899999999888888899999999999988
Q ss_pred HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHH
Q 006650 156 AEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234 (637)
Q Consensus 156 ~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl 234 (637)
...++..... +...+......++++.++..++.+++.++....+.++..++|..+|+|++++|+++|+++++|++++|+
T Consensus 178 ~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~ 257 (710)
T TIGR03796 178 QIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRV 257 (710)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHh
Confidence 8777543211 111111111222233444566778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQ 314 (637)
Q Consensus 235 ~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (637)
++| +.+++++...+..++.+++.+++++++|++++|++++++++++|+++++..++.++.++..++.++..++.++.+.
T Consensus 258 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (710)
T TIGR03796 258 QLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAI 336 (710)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 7899999888888899999999999999999999999999999999888888888888888888888999999999
Q ss_pred HHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHH
Q 006650 315 ETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYV 394 (637)
Q Consensus 315 E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~ 394 (637)
|.++|+++||++|.|+.+.++|++...+..+...+..............+.....++++++|++++..|++|+|+++++.
T Consensus 337 e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~ 416 (710)
T TIGR03796 337 SGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQ 416 (710)
T ss_pred HHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999988888877766666655555666666778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc----c-cccc-ccCCCcEEEEEEEEECCCCCCcCcc
Q 006650 395 LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPIL 468 (637)
Q Consensus 395 ~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~----~-~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL 468 (637)
.+...+..|+..+...+..+.++..+.+|+.++++.+++..... . .... +...+.|+|+||+|+|++. ++++|
T Consensus 417 ~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL 495 (710)
T TIGR03796 417 SLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLI 495 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcc
Confidence 99999999999999999999999999999999998876532211 0 0111 2335689999999999864 35799
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhc
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~ 548 (637)
+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|||||||++||+|||+|||++
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l 575 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 006650 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626 (637)
Q Consensus 549 g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I 626 (637)
+ .++++||++++||+.++++++|+++|+||||.+||+ +|||||||||||||||+++|+||||||||||||++||++|
T Consensus 576 ~-~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i 654 (710)
T TIGR03796 576 W-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654 (710)
T ss_pred C-CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHH
Confidence 9 458999999999999999999999999999999984 8999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 006650 627 KANTLD 632 (637)
Q Consensus 627 ~~~il~ 632 (637)
.+++.+
T Consensus 655 ~~~l~~ 660 (710)
T TIGR03796 655 DDNLRR 660 (710)
T ss_pred HHHHHh
Confidence 999754
No 14
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-85 Score=744.27 Aligned_cols=509 Identities=21% Similarity=0.266 Sum_probs=437.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhH--HHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 006650 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEA--MVFHK--SSRFLVLLCVTSGIFSGLRSGC 194 (637)
Q Consensus 120 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~-~~~~--~~~~~--~~~~l~~l~~~~~v~~~i~~~~ 194 (637)
+++++++++++++.+++++++.++++++.+..|.+++..++... ..+. ..+.. ....+.+++++..++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999988887776431 1110 00110 0112223344556667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006650 195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (637)
Q Consensus 195 ~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~ 274 (637)
....+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++.+++++++|+++||+++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 275 LSALLICSFLSII-VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (637)
Q Consensus 275 lv~l~~~~l~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (637)
+++++++|++.++ ..++.++.++..++.++..+++++.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888876553 466677778888888899999999999999999999999999999999999999999998887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006650 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL-IYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (637)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l-~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~ 432 (637)
.+.......++..+..++++++|+++ ..|.+++|.++++..|.... ..|+..+...+..+.++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666655655556667778889888 48999999999988876443 45777778888888999999999999999876
Q ss_pred CCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 006650 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (637)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 512 (637)
+.++++. .......+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 323 ~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFPTT-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCCcc-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 5322211 1112234679999999999864 2479999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCCh
Q 006650 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (637)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSG 590 (637)
|+|+++++.+++|++|+||+||++||++||+|||++|+ ++++||++++|++.+++++||++ |+||||.+||+ +|||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999995 58999999999999999999999 99999999994 8999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||||||||||+++||+|||||||||+||++||+.|++++.+.
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997543
No 15
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-84 Score=742.17 Aligned_cols=515 Identities=29% Similarity=0.435 Sum_probs=446.7
Q ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSG 193 (637)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~-~~~~~~~~l~~l~~~~~v~~~i~~~ 193 (637)
+.|+.+++++++++++++.++..+++.++.+++.+..|.++...++.....+.. ........++++.++..++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 8 STWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667889999999999988888888888888788887776665433211111 1111111122234445566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006650 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273 (637)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l 273 (637)
+..+.+.++..++|..+|+++.+.|+.+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|.+
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (637)
Q Consensus 274 ~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (637)
++++++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||.||.|+.+.++|++..++..+...+....
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888899999999999999999999999999999999999999999988887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006650 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 433 (637)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~ 433 (637)
.........++.....++++++|++.+..|++|+|+++++..+...+..|+..+...+..+.++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 66655555565556677788899999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 434 NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
.+. +....++..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 328 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 328 KDE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 221 111122334579999999999864 35799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChH
Q 006650 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 591 (637)
Q Consensus 514 ~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGG 591 (637)
+|+++++.+++|++|+|||||+++|+|||+|||++|++++++||++++|++.+++++|+++||+||||.+||+ +||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 9999999999999999999999999999999999995445899999999999999999999999999999984 89999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||+|||||+|+|+||||||||||||++||+.|.+++.+
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999754
No 16
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.7e-84 Score=728.26 Aligned_cols=499 Identities=23% Similarity=0.301 Sum_probs=429.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-R-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLR 207 (637)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~-~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr 207 (637)
||+.+..++++.++++++.+..|++++..++... . .+...+......+.++.++..++.+++.+.....+.++..++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788888899999999998888776542 1 1111111122223334445566778888888889999999999
Q ss_pred HHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006650 208 ETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSII 287 (637)
Q Consensus 208 ~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~i 287 (637)
.++|++++++|+.+|++.++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++++|+..++
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888888888888889999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 288 VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS 367 (637)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (637)
...+.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++|++..+++.+...+..+...........+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888899999999999999999999999999999999999998888777665555544444444444
Q ss_pred HHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCC
Q 006650 368 TQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447 (637)
Q Consensus 368 ~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~~ 447 (637)
..+++++++++.+..|++|+|.++++.+|...+..|+..+...+..+.++..+.+|+.++++.+++... ..... ....
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~~~~-~~~~ 318 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KAPVT-AAPA 318 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcCCC-CCCC
Confidence 455556677888889999999999999999999999999999999999999999999999985543211 11111 1123
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
++|+|+||+|+||+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++
T Consensus 319 ~~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 5799999999998642 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~ 605 (637)
|+||+|||++|+|||+|||++|+ ++++||++++|++.+++++||+++|+||||.+||+ +|||||||||+||||+++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999994 57899999999999999999999999999999984 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+|+|||||||+||+++|+.|.+++.+
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999998754
No 17
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-83 Score=744.82 Aligned_cols=510 Identities=26% Similarity=0.326 Sum_probs=448.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (637)
Q Consensus 120 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~ 198 (637)
+++++++++++++.+...+++.++..+..+..|+++...++.... .+...+......++++.++..++.+++.++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999988888899999999999988877764421 1212222112223333444566788888999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006650 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (637)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l 278 (637)
+.++..++|.++|+|++++|+.+|++.++|++++|+ +|++.+++++...+..++.+++..++.+++|++++|.++++++
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 285 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 6999999998888877787888788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (637)
Q Consensus 279 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (637)
+++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++..++..+...+.....+...
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR01846 286 GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAG 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888889999999999999999999999999999999999999988888776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 006650 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (637)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~ 438 (637)
.....+..+..++++++|++++..|++|+|++++|.++...+..|+..+...+..+.++..+.+|+.++++.+++... .
T Consensus 366 ~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-~ 444 (694)
T TIGR01846 366 QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-A 444 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-C
Confidence 555666667778889999999999999999999999999999999999999999999999999999999987765321 1
Q ss_pred cccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 006650 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (637)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 518 (637)
.....+...++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 111223345789999999999754 3469999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHH
Q 006650 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRI 596 (637)
++.+++|++|+||+||+++|++||+|||++++ +++++|++++||+.++++|+|+++|+||||.+||+ +|||||||||
T Consensus 524 ~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 524 ADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred CCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999994 58999999999999999999999999999999984 8999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
+|||||+++|+|||||||||+||+++|+.|.+++.+.
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997543
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.4e-83 Score=727.37 Aligned_cols=510 Identities=31% Similarity=0.469 Sum_probs=450.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (637)
Q Consensus 121 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~-~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~ 199 (637)
++++++.+++++.+++++++.++.+++.+..|+++...++...... ...+.....+++++.++.+++.+++.++....+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999988776665332211 111111122233444555667788888888899
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006650 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (637)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~ 279 (637)
.++..++|..+|+++++.|.++|++.++|++++|+++|++.+++.+...+..++.+++.++++++++++++|.+++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~ 162 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVV 162 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (637)
Q Consensus 280 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (637)
++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.++.+.++|++..++..+...+..+..+....
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (571)
T TIGR02203 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP 242 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989899999999999999999999999999999999999999999999999999999999888887766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 006650 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (637)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~ 439 (637)
....+..+..++++++|++++.+|++|+|.++++..+..++..|+..+...+..+.++..+.+|+.++++.+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-- 320 (571)
T TIGR02203 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG-- 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--
Confidence 556666667778889999999999999999999999999999999999999999999999999999999876653221
Q ss_pred ccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
....++..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 321 ~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 321 TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399 (571)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc
Confidence 11122234689999999999864 35799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHH
Q 006650 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIa 597 (637)
+.+++|++|+||||||+||+|||+|||++++++++++++++++++.+++++++.++|+||||.+||+ +||||||||||
T Consensus 400 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999995347999999999999999999999999999999984 89999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
||||+++||||+|||||||+||++||+.|.+.+.+.
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987553
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.5e-83 Score=727.98 Aligned_cols=510 Identities=25% Similarity=0.324 Sum_probs=431.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 006650 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFH--KSSRFLVLLCVTSGIFSGLRS 192 (637)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~--~~~~~l~~l~~~~~v~~~i~~ 192 (637)
+|+.+++++.|.+++++.+...+++.++.+++.+..|.++...++.... .+..... ....+++++.++..++.+++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 7 LWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999988889999999999999988877764321 1111110 001111222233445566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006650 193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (637)
Q Consensus 193 ~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~ 272 (637)
+.......++..++|.++|+++++.|+++|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|.
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999999999999999999999999999888899998888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (637)
Q Consensus 273 l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (637)
++++.++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||.||.|+.+.++|++..++..+...+...
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877777777777788888888888999999999999999999999999999999988888877666554
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006650 353 AYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (637)
Q Consensus 353 ~~~~~-~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~ 431 (637)
..+.. .....++.....++++++++. +..|.+++|.++++..|...+..|+..+...+..+.++..+.+|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44332 222222222222333344444 6789999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
+++.. . ...+...++|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 326 ~~~~~-~--~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 326 RQQYG-N--DDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred CccCC-C--CccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 54211 1 1112234679999999999853 47999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCC
Q 006650 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (637)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LS 589 (637)
||+|+++++.+++|++|+||||||+||+|||+|||++| . +++|+++++||++++++++|+++|+||||.+||+ +||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~-~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-R-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhC-C-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999 4 6899999999999999999999999999999984 899
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||||||+|||||++||||||||||||+||++||+.|++.+.+.
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~ 522 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV 522 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997543
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.4e-82 Score=720.48 Aligned_cols=513 Identities=23% Similarity=0.309 Sum_probs=432.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (637)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~ 195 (637)
.++.++++++++++++..+.+.+++.++..++.+..|+++...++...... . ......+++++.++..+..++.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 3 LFRLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-D-IFPLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999998888999999999999998877775432211 1 11001111111122222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006650 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (637)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~l 275 (637)
.+...++..+++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+..++..++..++.+++++.++|.+++
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 160 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSL 160 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667779999999999999999999999999999999999888777877888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (637)
Q Consensus 276 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (637)
++++++|++.++...+.++.++..++.++..++.++.+.|.++|+++||.||.++.+.++|++..++..+...+.....+
T Consensus 161 ~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (588)
T PRK13657 161 VLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWA 240 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888899999999999999999999999999999999999999888777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 006650 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (637)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~ 435 (637)
.......++.....++++++|++++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 320 (588)
T PRK13657 241 LASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 55444445555666778899999999999999999999999999999999999999999999999999999998755432
Q ss_pred CCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 006650 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (637)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 515 (637)
........+...+.|+|+||+|+||++ .++|+|+||+++|||++||||+||||||||+|+|+|+|+|++|+|++||+|
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~ 398 (588)
T PRK13657 321 DPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398 (588)
T ss_pred CCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 211111122234579999999999853 369999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHH
Q 006650 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (637)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQk 593 (637)
+++++.+++|++|+||||||+||+|||+|||++++ ++++||++++|++.++++++++++|+|+||.+|++ +||||||
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred hhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999995 58899999999999999999999999999999984 8999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||||||||+++|+|||||||||+||+++|+.|.+++.+.
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997553
No 21
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.1e-81 Score=714.47 Aligned_cols=511 Identities=23% Similarity=0.300 Sum_probs=434.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (637)
Q Consensus 117 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~ 196 (637)
++.+++++++++++|+.++..+++.++.+++.+..|++++..++.....+.. .. ....+++..++..+..+++.....
T Consensus 4 ~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 4 FQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LP-TLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999999999999888877643222111 00 001111112222233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006650 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (637)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv 276 (637)
....++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++++++|+.+||.++++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 161 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV 161 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777899999999999999999999999999999999999888888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (637)
Q Consensus 277 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (637)
+++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.+++++..++..+...+.....+.
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (585)
T TIGR01192 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWAL 241 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888999999999999999999999999999999999999888887776655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 006650 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 436 (637)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~ 436 (637)
.......+.....++++++|++++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.++
T Consensus 242 ~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 321 (585)
T TIGR01192 242 ASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 55444455555667788899999999999999999999999999999999999999999999999999999987654322
Q ss_pred CccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 006650 437 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (637)
Q Consensus 437 ~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di 516 (637)
.......+...+.|+|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 322 PADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred CccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 11111122234579999999999853 3699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHH
Q 006650 517 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQ 594 (637)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQ 594 (637)
++++.+++|++++||+||+++|++||+|||++++ ++++++++++|++.+++++++.++|+||||.+|++ +|||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 9999999999999999999999999999999994 57899999999999999999999999999999984 89999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+|||||+++|++||||||||+||+++|+.+.+.+.+
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998743
No 22
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-86 Score=688.64 Aligned_cols=491 Identities=25% Similarity=0.353 Sum_probs=411.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 134 VLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR-FLVLLCV------TSGIFSGLRSGCFSIANIVLVKRL 206 (637)
Q Consensus 134 l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~-~l~~l~~------~~~v~~~i~~~~~~~~~~~~~~~l 206 (637)
.+.+++++++.-+..+..|.+....++.....+. +..... ..+.+.+ .+++++-+|.+++..+.+...+++
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~--~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~i 294 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAPDT--FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREI 294 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch--hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHH
Confidence 3445566666777778889887777655432211 111111 1122221 235566778888888888889999
Q ss_pred HHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH
Q 006650 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTLSWPLTLSALLICSFLS 285 (637)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~-l~~~sw~l~lv~l~~~~l~~ 285 (637)
-.++|+|+..+++.|+-++++||++.-++.....+. +....+.++...++-.++++++ ...+||+.+++++++..++.
T Consensus 295 e~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~ 373 (790)
T KOG0056|consen 295 ETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYC 373 (790)
T ss_pred HHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988765554444 4444444455555544555544 45689999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (637)
Q Consensus 286 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (637)
.+.......+-+.++++..+..+......|++-+.+|||-||+|++|.+||++...++.+...|......+.+...+.+.
T Consensus 374 ~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii 453 (790)
T KOG0056|consen 374 YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII 453 (790)
T ss_pred heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 76654444555555666655556666778999999999999999999999999999999998887766777777777777
Q ss_pred HHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 006650 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (637)
Q Consensus 366 ~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~ 445 (637)
..+.++..++.+|.|..+.+|+|+.+.|..|..++..|+..++..+..++.+....|++++++++++|..+.++..+...
T Consensus 454 ~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~ 533 (790)
T KOG0056|consen 454 GLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKV 533 (790)
T ss_pred hhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccc
Confidence 66777777788899999999999999999999999999999999999999999999999999999998776665555555
Q ss_pred CCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh
Q 006650 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR 525 (637)
..|.|+|+||+|.|.++ +|||+||||+++||+++|+|||||+||||+++||.||||.++|.|.|||+|+++++.+++|
T Consensus 534 ~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred cCCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHH
Confidence 67999999999999754 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHc
Q 006650 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALl 603 (637)
++||+||||..|||+||.+||+|| .+++++||+++|+++|++||-|.++|+||+|.|||+ +||||||||+||||+++
T Consensus 612 s~IGVVPQDtvLFNdTI~yNIrya-k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFNDTILYNIRYA-KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HhcCcccCcceeecceeeeheeec-CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 999999999999999999999999 569999999999999999999999999999999996 89999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|+|.|++|||||||||+.||++||.++
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 999999999999999999999999985
No 23
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.1e-81 Score=713.58 Aligned_cols=515 Identities=32% Similarity=0.497 Sum_probs=443.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (637)
Q Consensus 118 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~ 196 (637)
..+++++++++++++.+.+.+++.++.+++.+..|+++...++... ..+...+.....+++++.++..++.+++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (576)
T TIGR02204 4 RPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVT 83 (576)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999988888999999999999998887776422 111111222222222333344455677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006650 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (637)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv 276 (637)
..+.++..++|..+|++++++|..+|++.++|++++|+++|++.+++++...+..++..++.+++++++++.++|.++++
T Consensus 84 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 84 WLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88899999999999999999999999999999999999999999999988888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (637)
Q Consensus 277 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (637)
+++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888899999999999999999999999999999999999999888877666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 006650 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 436 (637)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~ 436 (637)
.......+.....++++++|++++.+|++|+|+++++..|..++..|+..+...+..+..+..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 44443444445566778899999999999999999999999999999999999999999999999999999987654221
Q ss_pred Ccccccc-ccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 006650 437 LSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (637)
Q Consensus 437 ~~~~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 515 (637)
....... .+..+.|+|+||+|+||+++++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 1111111 122457999999999986433579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHH
Q 006650 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (637)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQk 593 (637)
+++++.+++|++|+||||||++|+|||+|||++|+ ++.+||+++++++.++++++++++|+|+||.+||+ +||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 99999999999999999999999999999999994 57889999999999999999999999999999984 8999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||+||||++++|+|||||||||+||+++|+.|.+.+.+.
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987654
No 24
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-81 Score=668.82 Aligned_cols=512 Identities=26% Similarity=0.348 Sum_probs=425.2
Q ss_pred HHHHHHHHHHHh----hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHH---HHHHHHHHHHHHHHH
Q 006650 117 WIALSRMWNLIG----RDKWI-VLVAVASLIVAAVSEITMPRILAEAVFSAQREE--AMVFH---KSSRFLVLLCVTSGI 186 (637)
Q Consensus 117 ~~~~~~l~~~~~----~~~~~-l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~--~~~~~---~~~~~l~~l~~~~~v 186 (637)
+...+.+..|.+ |+-+. .+.++++++.+-+..+.+|+++...++.....+ ...+. ..+.-+.+.-+.+.+
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 345556655554 33333 334444555556888899998887776553111 11111 111222334455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 006650 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN- 265 (637)
Q Consensus 187 ~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~- 265 (637)
++-++...+..+.+++..+.-..+|+++++++.++|.+..+|++.+.+..-+..+..++...+..++..++.+......
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999999998888777777766555444432
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHH
Q 006650 266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (637)
Q Consensus 266 l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~ 345 (637)
-..+....++++++.+..+.........++.+..++..++.++....+.|.+.+.++||.||.|++|.++|...+.++.+
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~ 249 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYER 249 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 23355777777776666666655555666777778888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425 (637)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~ 425 (637)
.+.+.....++.+.....++....+.+.+.|..-+.+|.+|+|+++....+..++..|+..++..+..+.+++...+.++
T Consensus 250 ~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~ 329 (591)
T KOG0057|consen 250 AGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLF 329 (591)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99888877788777777777677777788888888999999999999999999999999999999999999998888887
Q ss_pred HHhhcCCCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 006650 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (637)
Q Consensus 426 ~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~ 505 (637)
...+....+++. ..+.....+.|+|+||+|+|+++ .++|+++||+||+||+|||||+|||||||++++|.|||+ +
T Consensus 330 ~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~ 404 (591)
T KOG0057|consen 330 ILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y 404 (591)
T ss_pred hhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c
Confidence 776543332221 12223345789999999999843 469999999999999999999999999999999999999 9
Q ss_pred CceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC
Q 006650 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (637)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge 585 (637)
+|+|+|||+|+++++.+++|+.|||||||.+||++||.+||.||| +++++||+.++||.+++||-|.++|+||+|.|||
T Consensus 405 sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 405 SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred CCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 999999999999999999999999999999999999999999996 5999999999999999999999999999999999
Q ss_pred C--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 586 D--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 586 ~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
+ .||||||||+|||||++|||||+++|||||+||++||+.|.+++++..
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~ 534 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM 534 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc
Confidence 5 899999999999999999999999999999999999999999998843
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-79 Score=698.45 Aligned_cols=488 Identities=27% Similarity=0.406 Sum_probs=415.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 006650 141 LIVAAVSEITMPRILAEAVFSAQRE--EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218 (637)
Q Consensus 141 ~~~~~~~~i~~P~~l~~~i~~~~~~--~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~ 218 (637)
.++.+++.+..|+++...++..... +...+.....++++..++..++.+++.++....+.++..++|.++|++++++|
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666777888887777643211 11111111112222233344556667777777888999999999999999999
Q ss_pred chhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL-LTLSWPLTLSALLICSFLSIIVSVYGQYQKR 297 (637)
Q Consensus 219 ~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l-~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~ 297 (637)
+++|++.++|++++|+++|++.++..+...+..++..++..+++++++ +.++|.+++++++++|+++++...+.++.++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887777777777766666666555 5899999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 377 (637)
Q Consensus 298 ~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~ 377 (637)
..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+.....++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999988888877666665555444444556677788999
Q ss_pred HHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCcEEEEEEEE
Q 006650 378 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISF 457 (637)
Q Consensus 378 ~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF 457 (637)
+++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.+. .....+...++|+|+||+|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~--~~~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD--GSEPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCCCCCCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999987654321 1111222346799999999
Q ss_pred ECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcc
Q 006650 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (637)
Q Consensus 458 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (637)
+|++. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|+|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99853 34799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 006650 538 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 615 (637)
Q Consensus 538 F~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaT 615 (637)
|++||+|||++|+ ++++++++++|++.+++++++.++|+||||.+||+ +|||||||||+|||||+++|+||||||||
T Consensus 401 f~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 401 FSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 9999999999994 57899999999999999999999999999999984 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 006650 616 SALDSESEHYVKANTLD 632 (637)
Q Consensus 616 SaLD~~tE~~I~~~il~ 632 (637)
|+||+++|+.|.+.+.+
T Consensus 480 s~LD~~~~~~i~~~l~~ 496 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQ 496 (569)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999998754
No 26
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-79 Score=660.81 Aligned_cols=456 Identities=24% Similarity=0.314 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (637)
Q Consensus 177 l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (637)
+++..++.+++...+.....+.+.++..++|..+++|+.++++.+-.+.++|+..+.+...++.++.+++..+++++...
T Consensus 46 l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ 125 (559)
T COG4988 46 LLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHH
Q 006650 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (637)
Q Consensus 257 l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~ 336 (637)
+..+..+++++++||.-++++++..|++.+.+.++++..++..++..+.+...++.+.|.++|+.|+|.|++.+...++.
T Consensus 126 ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i 205 (559)
T COG4988 126 IVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERI 205 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415 (637)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~-g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~ 415 (637)
.+..+++++..++.-+..-.....+.++.+++.+++..+.+...+. |++|......++++..-++.|+..++..+..-+
T Consensus 206 ~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~ 285 (559)
T COG4988 206 RKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAA 285 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999999988654333334445666666666665566666666 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccc-ccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHH
Q 006650 416 QSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494 (637)
Q Consensus 416 ~~~~a~~ri~~~ld~~~~~~~~~~~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL 494 (637)
.+.++.++++.+++.+++.......... .....+|+++|++|+||+++ ++++|+||+++||+++||||+||||||||
T Consensus 286 ~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTL 363 (559)
T COG4988 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTL 363 (559)
T ss_pred hhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHH
Confidence 9999999999999987653221111011 11223455669999999753 79999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHc
Q 006650 495 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574 (637)
Q Consensus 495 ~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~ 574 (637)
+++|+||++|++|+|.+||+|+++++.++||+++++|+|+||||+|||||||++++ ++++||++.+|++.+++.||++.
T Consensus 364 l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~-~~~s~e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 364 LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR-PDASDEEIIAALDQAGLLEFVPK 442 (559)
T ss_pred HHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccC-CcCCHHHHHHHHHHhcHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999994 68999999999999999999999
Q ss_pred CCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 575 LPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 575 lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
|+|+||.+||+ +|||||+||+|+||||+++++++|||||||+||.|||+.|+++|.+.-.+
T Consensus 443 -p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ 505 (559)
T COG4988 443 -PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505 (559)
T ss_pred -CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC
Confidence 99999999994 99999999999999999999999999999999999999999998665443
No 27
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.5e-79 Score=688.53 Aligned_cols=494 Identities=22% Similarity=0.261 Sum_probs=418.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (637)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~l 206 (637)
+++|+.++..+++.++..++.+..|+++...++... ..+...+......++++.++..++.+++.++....+.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888889999999999998888776432 1111111111222233344455677788888888999999999
Q ss_pred HHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006650 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN-DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (637)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~-~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~ 285 (637)
|.++|+|++++|+. +.++..+++++|++.+++.+.. .+..++..++. ++.+++++.++|++++++++++|+++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999984 3466788999999999998776 44444444443 34456789999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (637)
Q Consensus 286 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (637)
++..++.++.++..++.++..++.++.+.|.++|+++||.||.|+.+.++|++..++..+...+.....+........+.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888889999999999999999999999999999999999999988888776666555555555555
Q ss_pred HHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 006650 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (637)
Q Consensus 366 ~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~ 445 (637)
....++++++|++++.+|++|+|+++++++|...+..|+..+...+..+.++..+.+|+.++++.+++... . ...+.
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~-~~~~~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP--A-MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--C-CCCCC
Confidence 55667778899999999999999999999999999999999999999999999999999999987654321 1 11222
Q ss_pred CCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh
Q 006650 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR 525 (637)
..+.|+++||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34679999999999854 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHc
Q 006650 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALl 603 (637)
++|+||||||++|++||+|||+++ .+++++|+++++++.++++++++++|+||||.+||+ +|||||||||+||||++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARF-GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hheEEecCCcccccccHHHHHhcc-CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988 457899999999999999999999999999999984 99999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+||++||||||||+||+++|+.+.+.+.+
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~ 499 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKA 499 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999998754
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.2e-79 Score=745.51 Aligned_cols=512 Identities=27% Similarity=0.392 Sum_probs=442.2
Q ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 119 ALSRMWNLI-GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (637)
Q Consensus 119 ~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~ 197 (637)
.+.++++|. +++++.+++++++.++++++....|.+++..++.....+ ........+++++++..++.+++.+++.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 123 (1466)
T PTZ00265 46 PFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIFSLVLIGIFQFILSFISSFCMDV 123 (1466)
T ss_pred cHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778887 568888888899989988888888888887776432111 11112233444555667778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006650 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (637)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~ 277 (637)
.++++..++|.++|++++++|.+|||+.++|++.+|+++|++.+++.+...+..++..+++++++++++++++|+|++++
T Consensus 124 ~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~ 203 (1466)
T PTZ00265 124 VTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCI 203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (637)
Q Consensus 278 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (637)
++++|+++++..++.++.++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+..
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999898888888888888999999999999999999999999999999999999998888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006650 358 NMSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (637)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~lv~~g--------~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld 429 (637)
.....++..+..++++|+|++++..| .+++|+++++..+.......+..+...+..+..+..|++|++++++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666666677788899999999986 5889998887766555444445556677888899999999999999
Q ss_pred cCCCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 006650 430 LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (637)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I 509 (637)
.+++.+...++...+. .+.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 442 (1466)
T PTZ00265 364 RKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 (1466)
T ss_pred CCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE
Confidence 8776432222222222 247999999999987654579999999999999999999999999999999999999999999
Q ss_pred EE-CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCC-------------------------------------
Q 006650 510 YI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------------------------------------- 551 (637)
Q Consensus 510 ~i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~------------------------------------- 551 (637)
++ ||+|+++++.+++|++||||+|+|+||++||+|||++|..
T Consensus 443 ~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1466)
T PTZ00265 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDL 522 (1466)
T ss_pred EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchh
Confidence 99 6799999999999999999999999999999999999731
Q ss_pred -------------------CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEE
Q 006650 552 -------------------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILL 610 (637)
Q Consensus 552 -------------------~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILI 610 (637)
++++||++++||+.+++++||.+||+||||.+|++ +|||||||||||||||+++|+|||
T Consensus 523 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILl 602 (1466)
T PTZ00265 523 NDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILI 602 (1466)
T ss_pred hhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 13678999999999999999999999999999984 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 611 LDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~il~~l 634 (637)
||||||+||+++|+.|++++ +++
T Consensus 603 LDEpTSaLD~~se~~i~~~L-~~~ 625 (1466)
T PTZ00265 603 LDEATSSLDNKSEYLVQKTI-NNL 625 (1466)
T ss_pred EeCcccccCHHHHHHHHHHH-HHH
Confidence 99999999999999999986 444
No 29
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-78 Score=646.46 Aligned_cols=507 Identities=23% Similarity=0.256 Sum_probs=413.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA-QREEAMVFH--KSSRFLVLLCVTSGIFSGLRSGCFSIANIVLV 203 (637)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~-~~~~~~~~~--~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~ 203 (637)
.+++|+.+.++++++++..+..+.+-...++.+-.. ..+....+. -....+=++++...+..+...+..+....++.
T Consensus 11 ~~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 11 YKRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334777888888888888877776655444444211 111100110 00011112344445555666667777888999
Q ss_pred HHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006650 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 283 (637)
Q Consensus 204 ~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l 283 (637)
.++|.++|+++...++.-..+.++||+++|++.|++.+++++...+.+.+..++...+..+.+.++||.+++.+.+.+.+
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~ 170 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLL 170 (573)
T ss_pred HHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888888888889999998876665544
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 284 L-SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (637)
Q Consensus 284 ~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (637)
. +++..++.++.++..+...+..+.+.+.+.|.+.|+.+.+.||+++...+.+++..+.+.+.+.+.+...++.+.+..
T Consensus 171 ~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~ 250 (573)
T COG4987 171 LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILL 250 (573)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 445567778888888888889999999999999999999999999999999999999999999998888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc
Q 006650 363 TLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441 (637)
Q Consensus 363 ~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~-~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~ 441 (637)
++.....+..+.+.+-.+-.|..+.-...++++.....+.+...+. ..+....+...|++|+.++++.+++...+ + .
T Consensus 251 l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~-~ 328 (573)
T COG4987 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-D-E 328 (573)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-c-c
Confidence 6654444434444444555677775444444444344555555565 66778889999999999999998876543 1 1
Q ss_pred ccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 006650 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 442 ~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~ 521 (637)
+.+.....++++||||+||+++ .++|+|+||++++||+|||+|+|||||||+++||+|-|+|++|+|.++|.++..++.
T Consensus 329 ~~~~~~~~l~~~~vsF~y~~~~-~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 329 QTATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE 407 (573)
T ss_pred ccCCccceeeeccceeecCCCc-cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh
Confidence 1222222799999999999864 579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 599 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIA 599 (637)
+.+|+.|++++|.+|||++|+|||+++++ +++||||+++|++++|+++++++.|+||||.+||+ +||||||||+|||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLAN-PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 99999999999999999999999999995 68999999999999999999999999999999984 9999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhcC
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQK 637 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~~ 637 (637)
|+|++|+|++||||||.+||++||++|++.+++.+-.|
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~k 524 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGK 524 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998876543
No 30
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.8e-78 Score=684.11 Aligned_cols=501 Identities=17% Similarity=0.143 Sum_probs=415.3
Q ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (637)
Q Consensus 119 ~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~ 197 (637)
.+++++++++ ++|+.+++++++.++.++..+..|.++...++....... ....+++++.++..++.+++.++...
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ----GSLFSFGGLCLLALLFRIGADIFPAY 79 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999 999999999999999999999999877666543211100 11122334445556677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006650 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (637)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~ 277 (637)
.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++.. +..++..++.+++++++|+++||.+++++
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~ 158 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAIT 158 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864 67778888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYG 355 (637)
Q Consensus 278 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (637)
++++|+.+++..++.++.++..++.++..++.++.+.|.++|++++|+|+.++ .+.+++++..+++.+...+......
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 98888887777777777777778888888999999999999999999999954 5678888888888777765544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-
Q 006650 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN- 434 (637)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~- 434 (637)
........+......+.+++|++. |++|+|++++|++|...+..|+..++..+..+.++..+.+|+.++++.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~ 315 (555)
T TIGR01194 239 AAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE 315 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 332222222222222333444432 7999999999999999999999999999999999999999999998642111
Q ss_pred -C-CCcccc-----ccccCCCcEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 006650 435 -Q-FLSEGV-----KLQRLMGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (637)
Q Consensus 435 -~-~~~~~~-----~~~~~~~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~ 505 (637)
. +.++.. ......++|+|+||+|+|++.+ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 1 001100 1112246799999999998632 236999999999999999999999999999999999999999
Q ss_pred CceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC
Q 006650 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (637)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge 585 (637)
+|+|++||+|+++++.+++|+++++|+||++||++|+++|+ . +++++++++++++.++++++++++|+||||.
T Consensus 396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 99999999999999999999999999999999999999995 2 4688999999999999999999999999995
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
.+||||||||||||||+++||||||||||||+||+++|+.|++.+++.+
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 517 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL 517 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999877654
No 31
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.4e-78 Score=745.00 Aligned_cols=507 Identities=20% Similarity=0.258 Sum_probs=411.2
Q ss_pred HHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 121 SRMWNLIGRDKWI-VLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (637)
Q Consensus 121 ~~l~~~~~~~~~~-l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~ 198 (637)
..++.|++.-.+. .++.+++.++..++.+..++++..+.+.... .+..........++++.++.+++.+++.++....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~ 1032 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIG 1032 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555443222 2233344445556666777777665532110 0000001112234445555666667777788888
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006650 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (637)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l 278 (637)
+.+...++|.++|+++++.|++||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.++++++
T Consensus 1033 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~ 1112 (1522)
T TIGR00957 1033 GIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIP 1112 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999988899998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (637)
Q Consensus 279 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (637)
+++++++++.+.+.+..++..+...+..+...+.+.|+++|+++||+||.|+.+.+++.+..+...+..........+..
T Consensus 1113 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1522)
T TIGR00957 1113 PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLA 1192 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777888999999999999999999999999999888888877776655443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 006650 359 MSFITLYRSTQVMAVLLGGMSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (637)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~lv~-~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~ 437 (637)
.....+ ..+++++++++.+. .|.+++|.+++++.|...+..|+..+...+..+..+..|++|+.++++.+++....
T Consensus 1193 ~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1193 VRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 332322 22334455555554 58899999999999999999999999999999999999999999999877654311
Q ss_pred ccc-cccc--cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 006650 438 SEG-VKLQ--RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (637)
Q Consensus 438 ~~~-~~~~--~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 514 (637)
.++ .+++ +..|+|+|+||+|+|+++. .+||+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE
Confidence 111 1111 2457899999999998643 47999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHH
Q 006650 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 592 (637)
Q Consensus 515 di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQ 592 (637)
|+++++.+++|++|++|||||+||+|||||||... . +++|||+++|++.|+++|||+++|+||||.|||+ +|||||
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 99999999999999999999999999999999855 2 6899999999999999999999999999999983 999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
||||||||||+|+|+|||||||||+||++||+.|+++|.+.
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998554
No 32
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-76 Score=729.45 Aligned_cols=506 Identities=20% Similarity=0.258 Sum_probs=376.0
Q ss_pred HHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 121 SRMWNLIGRDK--WIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (637)
Q Consensus 121 ~~l~~~~~~~~--~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~ 198 (637)
..++.|++... +.+.+.+++.+++.++.+..++++..+.+........ .......+++++++..++.+++.++....
T Consensus 902 ~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~i~~~l~~~~~i~~~~~~~~~~~~ 980 (1622)
T PLN03130 902 KVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-PLFYNLIYALLSFGQVLVTLLNSYWLIMS 980 (1622)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554322 2333334455555666666777776555432111000 01112233445555667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006650 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (637)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l 278 (637)
+.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|...++++
T Consensus 981 ~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~ 1060 (1622)
T PLN03130 981 SLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIM 1060 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888999999888888888888875433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (637)
Q Consensus 279 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (637)
.+..+++++..++.+..++..+...+..+...+++.|+++|+++||+|+.++++.+++++..+...+..........+..
T Consensus 1061 pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~ 1140 (1622)
T PLN03130 1061 PLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLA 1140 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222223334444555566665666678899999999999999999999886666555544443332222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006650 359 MSFITLYRSTQVMAVLLGGMSIMIGQ-VS-----PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (637)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~lv~~g~-it-----~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~ 432 (637)
....+ ...+++++.+.+.+..+. .+ .+.+..++.|...+..++..+...+..+.....+++|+.++++.++
T Consensus 1141 ~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~ 1217 (1622)
T PLN03130 1141 IRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPS 1217 (1622)
T ss_pred HHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11111 122223333344444432 11 2333333444555555666666667778889999999999999876
Q ss_pred CCCCC-ccccccc--cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 006650 433 SNQFL-SEGVKLQ--RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (637)
Q Consensus 433 ~~~~~-~~~~~~~--~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I 509 (637)
|.... ++..+++ +..|+|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|
T Consensus 1218 E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1218 EAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred cccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 64221 1111111 235789999999999643 2479999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--C
Q 006650 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--L 587 (637)
Q Consensus 510 ~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~ 587 (637)
+|||+|+++++.+++|++|++|||||+||+|||||||.++ . +++|||+++||+.|+++|||+++|+||||.|||+ +
T Consensus 1297 ~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~-~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPF-N-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcC-C-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 9999999999999999999999999999999999999998 3 6799999999999999999999999999999985 9
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||||||||||||||+|+|+|||||||||+||++||+.|+++|.+.
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997654
No 33
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.3e-76 Score=724.68 Aligned_cols=447 Identities=18% Similarity=0.214 Sum_probs=372.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 184 SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263 (637)
Q Consensus 184 ~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~ 263 (637)
..++.+++.+.......+...++|.++|++++++|+.||++.++|++++|+++|++.+++.+...+..++..++.+++.+
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556667899999999999999999999999999999999999999999998998999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHH
Q 006650 264 INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL 343 (637)
Q Consensus 264 i~l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~ 343 (637)
+++++.+|.+.++++.+..++..+...+.+..++..+...+..+...+.+.|+++|+++||+||.++.+.++|.+..+..
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 98999998665554444334444555666677777777777888999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 344 AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI--MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGAT 421 (637)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv--~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~ 421 (637)
.+...+......+......++..+..+++.+++.+.+ ..+.+++|.+..++.|...+..++..+...+..+..+..++
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665444444443334443333333334444333 34568999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCc-------------------------ccc-----ccccCCCcEEEEEEEEECCCCCCcCcccce
Q 006650 422 EKVFQLIDLLPSNQFLS-------------------------EGV-----KLQRLMGHVQFVNISFHYPSRPTVPILNHV 471 (637)
Q Consensus 422 ~ri~~~ld~~~~~~~~~-------------------------~~~-----~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~i 471 (637)
+|++++++..++++.+. ... +..+..|+|+|+||+|+|+++ ..+||+||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~v 1329 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGV 1329 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecc
Confidence 99999997544321000 000 011134789999999999764 24699999
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCC
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 551 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~ 551 (637)
||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.++||++||+|||||+||+|||||||..+ .
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~-~ 1408 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF-L 1408 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 3
Q ss_pred CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHH
Q 006650 552 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD-PAILLLDEATSALDSESEHYVKA 628 (637)
Q Consensus 552 ~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~-p~ILILDEaTSaLD~~tE~~I~~ 628 (637)
+++|||+++||++|+++|||.++|+||||.|||+ +|||||||||||||||+|+ |+|||||||||+||++||+.|++
T Consensus 1409 -~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~ 1487 (1560)
T PTZ00243 1409 -EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA 1487 (1560)
T ss_pred -CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 7899999999999999999999999999999984 9999999999999999996 99999999999999999999999
Q ss_pred HHHHH
Q 006650 629 NTLDS 633 (637)
Q Consensus 629 ~il~~ 633 (637)
+|.+.
T Consensus 1488 ~L~~~ 1492 (1560)
T PTZ00243 1488 TVMSA 1492 (1560)
T ss_pred HHHHH
Confidence 97654
No 34
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-78 Score=629.00 Aligned_cols=438 Identities=30% Similarity=0.428 Sum_probs=391.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 006650 191 RSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTL 269 (637)
Q Consensus 191 ~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~-l~~~ 269 (637)
|..++...++.....+-...|.|+.++++.|+-++++|.+...+..-.+.++......+..++..++-+....++ ...+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 344566677777888889999999999999999999999988777777777777777777777776666555554 4568
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 006650 270 SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349 (637)
Q Consensus 270 sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~ 349 (637)
+|+.++++++++.++.++.......+-...++..++.++++....|++-+.++||.||+|+.+..+|++.++.+.+...|
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999998888877765555556666777888889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006650 350 ESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (637)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld 429 (637)
.....++.+.....++..........++..+..|++|+|+++....|..++..|+..++..+.++.+++...|+++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 87777777777777777777888888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccc-cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 006650 430 LLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (637)
Q Consensus 430 ~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~ 508 (637)
.+.+..+.++.++.. -..+.|.|+||+|.|.++ .++|+|+||++++|+++|+||+||+||||+.+||.||||+++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 888766655544433 345789999999999754 58999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--
Q 006650 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD-- 586 (637)
Q Consensus 509 I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~-- 586 (637)
|.+||+|+++++.+++|+.||+||||..||++||..||+|| .+++++||+++|++.|++|+||.++|+||||.|||+
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg-r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc-CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999 569999999999999999999999999999999996
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.||||||||+||||++||+|+||+|||||||||+.||++||.++.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~ 443 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR 443 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999963
No 35
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-75 Score=721.88 Aligned_cols=450 Identities=20% Similarity=0.277 Sum_probs=358.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (637)
Q Consensus 177 l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (637)
+.++.++..++.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+..++..+
T Consensus 956 y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~ 1035 (1495)
T PLN03232 956 YALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQL 1035 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455556677788888888899999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHH
Q 006650 257 LQGAGAFINLLTLSWPLTLSALLICSFLS-IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335 (637)
Q Consensus 257 l~~v~~~i~l~~~sw~l~lv~l~~~~l~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~ 335 (637)
+.+++.+++++.+++...++++ .+++.+ ++..++.+..++..+...+..+...+.+.|+++|+++||+||.++++.++
T Consensus 1036 ~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1036 WQLLSTFALIGTVSTISLWAIM-PLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 8888888888777764433332 222222 22233334455566666777788999999999999999999998877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCc----C-HHHHHHHHHHHHHHHHHHHHHHH
Q 006650 336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQV----S-PEQLTKYVLYCEWLIYATWRMVD 409 (637)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~-g~i----t-~G~l~a~~~~~~~l~~~~~~l~~ 409 (637)
+++..+...+..........+...... ....+++++.|.+.+.. |.+ . .+.+..++.|...+..++..+..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555444433322111111111111 11222223334444442 432 1 23344466777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCccc-cccc--cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcC
Q 006650 410 NLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQ--RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (637)
Q Consensus 410 ~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~-~~~~--~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~ 486 (637)
.+..+..+..+++|+.++++.++|.+...++ .+++ +..|+|+|+||+|+|+++ .++||+|+||+|+|||+|||||+
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~ 1270 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGR 1270 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECC
Confidence 8899999999999999999987764321111 1111 345789999999999643 24799999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHc
Q 006650 487 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566 (637)
Q Consensus 487 SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a 566 (637)
||||||||+++|+|+|+|++|+|+|||+|+++++.++||++|++|||||+||+|||||||.++ + +++|||+++|++.|
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~-~-~~sdeei~~al~~a 1348 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF-S-EHNDADLWEALERA 1348 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC-C-CCCHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999998 3 68999999999999
Q ss_pred CHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 567 YVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 567 ~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
+++|||+++|+||||.|||+ +|||||||||||||||+|+|+|||||||||+||++||+.|+++|.+.
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999984 99999999999999999999999999999999999999999998654
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-71 Score=683.48 Aligned_cols=444 Identities=19% Similarity=0.245 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 183 TSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGA 262 (637)
Q Consensus 183 ~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~ 262 (637)
+..++.+++.++..+.+.+...++|.++++++++.|+.||++.++|++++|+++|++.+++.+...+..++..++.+++.
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHH
Q 006650 263 FINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEK 342 (637)
Q Consensus 263 ~i~l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~ 342 (637)
++++++++|.++++++.++.+++++..++.+..++..+...+..+...+.+.|+++|+.+||+||.++.+.+++.+..+.
T Consensus 1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~ 1096 (1490)
T TIGR01271 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNL 1096 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999988776555555555555666666677777777778899999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 343 LAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ 422 (637)
.............+.......+.....++ ++...+....++.|.+..++.|...+..++..+...+..+.....+++
T Consensus 1097 ~~~~~~~~~~~~~wl~~~~~~i~~~~~~~---~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1097 HTANWFLYLSTLRWFQMRIDIIFVFFFIA---VTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333222333222222221111111 111111223456666666677777788888888888888899999999
Q ss_pred HHHHHhhcCCCCCCCccc--------------cccc---cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEc
Q 006650 423 KVFQLIDLLPSNQFLSEG--------------VKLQ---RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG 485 (637)
Q Consensus 423 ri~~~ld~~~~~~~~~~~--------------~~~~---~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG 485 (637)
|+.++++.+++.....+. ..++ +..|+|+|+||+|+|++. ..++|+|+||+|+|||+|||||
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEEC
Confidence 999999877653321110 0001 234789999999999753 3579999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHH
Q 006650 486 LSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565 (637)
Q Consensus 486 ~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~ 565 (637)
+||||||||+++|+|+|+ ++|+|+|||+|+++++.+++|++|+||||||+||+|||||||..+ . +.+||++++|++.
T Consensus 1253 rSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~-~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-E-QWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-c-CCCHHHHHHHHHH
Confidence 999999999999999997 799999999999999999999999999999999999999999876 2 6799999999999
Q ss_pred cCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 566 AYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 566 a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
++++++|.++|+||||.|||+ +|||||||||||||||+|+|+|||||||||+||.+||+.|++.|.+.
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999984 99999999999999999999999999999999999999999998665
No 37
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.2e-71 Score=586.04 Aligned_cols=498 Identities=22% Similarity=0.288 Sum_probs=419.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVK 204 (637)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~ 204 (637)
.+...+..++.+.++..+.-+..+..|.|+-+.-|..... ....+.....+..++.++.+++..+|+....+++.++..
T Consensus 17 ~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~ 96 (580)
T COG4618 17 VLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDR 96 (580)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555454444444555555677888776665433211 111122222333445667788899999999999999999
Q ss_pred HHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006650 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (637)
Q Consensus 205 ~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~ 284 (637)
.++..+|+...+.+.. .+..|+=.+-+ +|.++++++++..-...+-+.-..-+.+.++|.+++++++++++++.++
T Consensus 97 ~L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iL 172 (580)
T COG4618 97 QLNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIIL 172 (580)
T ss_pred HhccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877654 34556556666 6999999998864444444444444567778999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 285 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 364 (637)
Q Consensus 285 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (637)
+.+..+-.+..++..++..+...+.+..+.-+..+.++|++.|+.+...++|.+....+...+.+.+-..+.+....-.+
T Consensus 173 v~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~ 252 (580)
T COG4618 173 VVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRAL 252 (580)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88777777777777888888888999999999999999999999999999999999998888877666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 006650 365 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444 (637)
Q Consensus 365 ~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~ 444 (637)
-...+..++.+|+|+|+.|++|.|.+++-..+......|+......|.++..+..+.+|+.++++..|+.. ...+.|
T Consensus 253 Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~~m~LP 329 (580)
T COG4618 253 RMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---ERMPLP 329 (580)
T ss_pred HHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---CCCCCC
Confidence 67788999999999999999999999999999999999999999999999999999999999999877642 234556
Q ss_pred cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH
Q 006650 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l 524 (637)
+.++.+.+|+|++.=|+. ++|+|+|+||+++|||.+|||||||||||||+++|.|.++|++|.|++||-|++++|.+++
T Consensus 330 ~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 330 APQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred CCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHh
Confidence 678899999999988775 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHH
Q 006650 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARAL 602 (637)
-++|||.|||..||+|||+|||+-. .+++|+|.|.+|++.|++||.|.+||+||||.|||+ .|||||||||++||||
T Consensus 409 G~hiGYLPQdVeLF~GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 409 GRHIGYLPQDVELFDGTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred ccccCcCcccceecCCcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999765 358999999999999999999999999999999984 8999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|.||.+++||||.|+||.+-|+.+.++|.+
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~ 517 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILA 517 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHH
Confidence 999999999999999999999999999754
No 38
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.1e-70 Score=617.94 Aligned_cols=489 Identities=19% Similarity=0.142 Sum_probs=379.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 123 MWNLIGRDKWIVLVAVASLIVAAVSEITM-PRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIV 201 (637)
Q Consensus 123 l~~~~~~~~~~l~~~~~~~~~~~~~~i~~-P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~ 201 (637)
++++++++++.++.++++.++++++.+.. |++....++.... +... ...+.+++++..++.+++.++....+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SLLV----LPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999988888888888888775 5544445543211 1000 1112222233344566778888888899
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006650 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281 (637)
Q Consensus 202 ~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~ 281 (637)
+..++|.++|++++++|+++|++.++|++++|+++|++.+...+. .+..++..++.+++++++|++++|.+++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998665 4677788888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTE---EKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (637)
Q Consensus 282 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (637)
|+.+++...+.++.++..++.++..++.++.+.|.++|+++++ ++.+ +...+++++..++..+...+.........
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 9988888888888888888888899999999999999999996 5544 34567888877777766555433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 006650 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (637)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~ 438 (637)
.....+......+.+++++.. +..+.+.+..+..+...+..|+..+...+..+.++..+.+|+.++++.+++.+. +
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~ 312 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c
Confidence 111111111111112222211 223444444455555556789999999999999999999999999765433211 1
Q ss_pred cccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 006650 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (637)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 518 (637)
..... +..++|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++
T Consensus 313 ~~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 313 RPQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred ccccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 11111 113579999999999853 369999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
++.+++|++|+||+||+++|++||+|| + +++++++++++++.+++++++.. |+|. +++.+|||||||||+|
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQLLGPE---G--KPANPALVEKWLERLKMAHKLEL-EDGR---ISNLKLSKGQKKRLAL 460 (547)
T ss_pred CCHHHHhhheEEEecChhHHHHhhccc---c--CchHHHHHHHHHHHcCCchhhhc-cccC---CCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999 4 36788999999999998887763 5553 2456899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|||++++|++||||||||+||+++|+.+.+.+.+.+
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 496 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLL 496 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886544
No 39
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-70 Score=644.72 Aligned_cols=509 Identities=21% Similarity=0.315 Sum_probs=417.5
Q ss_pred HHHHHHHhh-hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 121 SRMWNLIGR-DKWIVLV-AVASLIVAAVSEITMPRILAEAVFSAQREEA--MVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (637)
Q Consensus 121 ~~l~~~~~~-~~~~l~~-~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~--~~~~~~~~~l~~l~~~~~v~~~i~~~~~~ 196 (637)
+-+++|++- ..+.... .+++.++..++.+..-+++..+.+....... .........+.+++++..++..+|++.+.
T Consensus 804 ~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~ 883 (1381)
T KOG0054|consen 804 SVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFA 883 (1381)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 3333222 2355555566666666667666543211110 01112234455566677777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006650 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (637)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv 276 (637)
..+.+..+.+...+++++++-|++|||+.++|.|++|+++|++.+++.+...+..++..++.+++.++++.+..|+..++
T Consensus 884 ~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~ 963 (1381)
T KOG0054|consen 884 KGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIA 963 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (637)
Q Consensus 277 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (637)
++.+..+++.+..+|.+-.|++.+......+...+++.|+++|+.|||+|+.|+++.+++.+..+...+...-......+
T Consensus 964 ~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RW 1043 (1381)
T KOG0054|consen 964 IIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRW 1043 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888899999999999999999999999999999999998887766554434433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 006650 357 WNMSFITLYRSTQVMAVLLGGMSIMI-GQ-VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN 434 (637)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~lv~~-g~-it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~ 434 (637)
...-...+ +.++++..+...++. +. +++|.+...+.|...+...+..+......+...+.|+||+.|+.+.++|.
T Consensus 1044 la~Rle~i---g~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~ 1120 (1381)
T KOG0054|consen 1044 LAVRLELL---GNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEA 1120 (1381)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCC
Confidence 33222222 222233333333332 22 77899999999999999999999999999999999999999999987662
Q ss_pred C-CCccccccc--cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 435 Q-FLSEGVKLQ--RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 435 ~-~~~~~~~~~--~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
+ +.++..+++ +..|+|+|+|++.+|.++ .++|||||||+|+|||||||||++|||||||++.|.|+.+|.+|+|.|
T Consensus 1121 p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~I 1199 (1381)
T KOG0054|consen 1121 PLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILI 1199 (1381)
T ss_pred CCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 1 111221111 357999999999999643 357999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCC
Q 006650 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (637)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LS 589 (637)
||+|+.++.+++||++++++||||.||+||+|.||--. +..+|+++|+|++.|++.++|.++|+|+|+.|.|+ |+|
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 99999999999999999999999999999999999644 36899999999999999999999999999999883 999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
-||||.+|+||||||+++||||||||+++|++|+..||++|.++-.
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~ 1323 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK 1323 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999987643
No 40
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-68 Score=615.53 Aligned_cols=503 Identities=16% Similarity=0.148 Sum_probs=412.3
Q ss_pred cHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----HHHHHHHHHH
Q 006650 115 TVWIALSRMWNLIGRDKW-----IVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR----FLVLLCVTSG 185 (637)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~-----~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~----~l~~l~~~~~ 185 (637)
.+++.+++++++++||++ .+++.++++++.+++.+..|.+.+..++.....+...+..... ++++..++..
T Consensus 74 ~~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~ 153 (659)
T TIGR00954 74 VFLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINS 153 (659)
T ss_pred HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668889999999987 5677778888889999999998888876543332221211111 1122233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN 265 (637)
Q Consensus 186 v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~ 265 (637)
+..+++.++....+.++..+++...|++....+..+||+ ++|++.+|+++|++.+.+.+...+..++..++.++++++.
T Consensus 154 ~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~ 232 (659)
T TIGR00954 154 AIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFK 232 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777788888999999999988999999997 8999999999999999999999999999999999988888
Q ss_pred HHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHH
Q 006650 266 LLT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA 344 (637)
Q Consensus 266 l~~-~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~ 344 (637)
|+. ++|.+++++++..|+..++.++++++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..+++.
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 886 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHH-h----CCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Q 006650 345 FIRIRESMAYGLWNMSFITLYR-STQVMAV-LLGGMSIM-I----GQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSS 413 (637)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l-~~g~~lv~-~----g~it~G~l~a-~~~~---~~~l~~~~~~l~~~~~~ 413 (637)
+...+.....+.......++.. ....+++ +.|+..+. . |.+|.|.+++ |+.| ...+..|+..++..+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877666666555554432 1222333 33332322 2 7899998776 6665 45668899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC--------C--ccc-------------cccccCCCcEEEEEEEEECCCCCCcCcccc
Q 006650 414 LLQSIGATEKVFQLIDLLPSNQF--------L--SEG-------------VKLQRLMGHVQFVNISFHYPSRPTVPILNH 470 (637)
Q Consensus 414 ~~~~~~a~~ri~~~ld~~~~~~~--------~--~~~-------------~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~ 470 (637)
+.++.++.+|++++++.+++... . +++ .......+.|+++||+|+||++ .++|+|
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~ 470 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIES 470 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeec
Confidence 99999999999999986432110 0 000 0011123579999999999753 369999
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCC
Q 006650 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 550 (637)
Q Consensus 471 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 550 (637)
+||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++|+||+|+|++|++|++|||.++.
T Consensus 471 isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~ 539 (659)
T TIGR00954 471 LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPD 539 (659)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCC
Confidence 9999999999999999999999999999999999999999874 67899999999999999999999973
Q ss_pred C------CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 551 P------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 551 ~------~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
. ++.++++++++++.+++++++++ |.||||..+. ++||||||||++|||||+++|+++|||||||+||+++|
T Consensus 540 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 540 SSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred ChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1 34678899999999999999988 9999999876 49999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 006650 624 HYVKANTLD 632 (637)
Q Consensus 624 ~~I~~~il~ 632 (637)
+.+.+.+.+
T Consensus 619 ~~l~~~l~~ 627 (659)
T TIGR00954 619 GYMYRLCRE 627 (659)
T ss_pred HHHHHHHHH
Confidence 999987644
No 41
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-68 Score=658.34 Aligned_cols=483 Identities=18% Similarity=0.184 Sum_probs=370.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH
Q 006650 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLR-SG--CFSIANIVLVK 204 (637)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~-~~--~~~~~~~~~~~ 204 (637)
+-+++.++.+.++.++..++.+..|+++...+......+.. .. ...+.+++++...+..... .+ ...+.+.++..
T Consensus 297 ~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 374 (1495)
T PLN03232 297 NSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-WV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRS 374 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777888888889999888777543222111 10 0111111111111111111 11 22456667778
Q ss_pred HHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006650 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (637)
Q Consensus 205 ~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~ 284 (637)
.++..+|+|+++++..++++.++|++++++++|++++++.+ ..+..++...+.++++++++ .+.+++..+++++++
T Consensus 375 ~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v~ 450 (1495)
T PLN03232 375 TLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLIL 450 (1495)
T ss_pred HHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Confidence 88889999999999999999999999999999999999976 45555555555444444332 233444333333222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 285 ---SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSF 361 (637)
Q Consensus 285 ---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (637)
+.+..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+......
T Consensus 451 ~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~ 530 (1495)
T PLN03232 451 FLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFIL 530 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344566777888888888899999999999999999999999999999998887776666665543333222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc
Q 006650 362 ITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441 (637)
Q Consensus 362 ~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~ 441 (637)
... ...+.++++|++.+..|.+|+|.+++++.+...+..|+..+...+..+.++..+++|+.++++.+++.... . .
T Consensus 531 ~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~-~-~ 606 (1495)
T PLN03232 531 NSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ-N-P 606 (1495)
T ss_pred HHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-c-C
Confidence 111 12233467899999999999999999999999999999999988999999999999999999876532211 1 1
Q ss_pred ccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 006650 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 442 ~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~ 521 (637)
......+.|+|+||+|+|+++++.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|.+.
T Consensus 607 ~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------- 675 (1495)
T PLN03232 607 PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------- 675 (1495)
T ss_pred CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------
Confidence 111223479999999999865446799999999999999999999999999999999999999999773
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 599 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIA 599 (637)
.+|++|+||+|+|+||+|||||||++|+ +.++|++++|++.|+++++++.||+|+||.|||+ +||||||||||||
T Consensus 676 -~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 676 -VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred -EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 4788999999999999999999999994 4789999999999999999999999999999995 9999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
||+|+||+|+||||||||||+++|+.|.+.+++.+
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~ 787 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999988766543
No 42
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-67 Score=650.34 Aligned_cols=485 Identities=17% Similarity=0.190 Sum_probs=367.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHH
Q 006650 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFS-GLRSGC--FSIANIVLV 203 (637)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~-~i~~~~--~~~~~~~~~ 203 (637)
++-+++.++.++++.++..++.+..|+++...+......+.. ... ..+.++++++..+.. ....+. ..+.+.++.
T Consensus 296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1622)
T PLN03130 296 NNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIG-YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777778888888899999888776433221110 100 111111111111111 111121 235666777
Q ss_pred HHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006650 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 283 (637)
Q Consensus 204 ~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l 283 (637)
..++..+|+|+++++..++++.++|++++++++|++++++.+ ..+..++...+.+++++++++..-...+++.++++.+
T Consensus 374 ~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l 452 (1622)
T PLN03130 374 STLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVL 452 (1622)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999987 4455566666665555554433211112222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 284 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 363 (637)
Q Consensus 284 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (637)
++.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+..............
T Consensus 453 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 532 (1622)
T PLN03130 453 MFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNS 532 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556667777778888888999999999999999999999999999998887766555444433322222211111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 006650 364 LYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (637)
Q Consensus 364 l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~ 443 (637)
. ...+.++++|++.+..|.+|+|.+++++.+...+..|+..+...+..+.++..+++|+.++++.++.... ++. ..
T Consensus 533 ~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~-~~~-~~ 608 (1622)
T PLN03130 533 I--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL-PNP-PL 608 (1622)
T ss_pred H--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cCC-cc
Confidence 1 1234566789999999999999999999999999999999998899999999999999999986543211 111 11
Q ss_pred ccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCCCCCHH
Q 006650 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIR 522 (637)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-G~I~idG~di~~i~~~ 522 (637)
....+.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++ |+|.
T Consensus 609 ~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~------------ 676 (1622)
T PLN03130 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------ 676 (1622)
T ss_pred cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE------------
Confidence 112357999999999986544579999999999999999999999999999999999999999 9997
Q ss_pred HHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHH
Q 006650 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIAR 600 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIAR 600 (637)
+|++|+||+|+|+||+|||||||+||+ +.++|++++|++.|+++++|+.||+|+||.|||+ +|||||||||||||
T Consensus 677 -l~~~Iayv~Q~p~LfngTIreNI~fg~--~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 677 -IRGTVAYVPQVSWIFNATVRDNILFGS--PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred -EcCeEEEEcCccccCCCCHHHHHhCCC--cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999994 3689999999999999999999999999999995 89999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|+|+||+|+||||||||||+++|+.|.+.+++.
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~~~l~~ 786 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHhhH
Confidence 999999999999999999999999987766554
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-60 Score=591.09 Aligned_cols=483 Identities=17% Similarity=0.199 Sum_probs=368.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006650 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLC---VTSGIFSGLRSGCFSIANIVLV 203 (637)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~---~~~~v~~~i~~~~~~~~~~~~~ 203 (637)
++-+++.++.+++..++..++.+..|+++...+......+.... ....+..+++ ++.+++.....+...+.+.++.
T Consensus 312 ~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 390 (1522)
T TIGR00957 312 YKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDW-QGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIK 390 (1522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777888888999999988877753221111100 0011111111 1222222222233455677888
Q ss_pred HHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Q 006650 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP-LTLSALLICS 282 (637)
Q Consensus 204 ~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~-l~lv~l~~~~ 282 (637)
..++..+|+|+++++..++++.++|++++++++|++++.+.. ..+..++..++.+++++++ ++..+. .+++.+++++
T Consensus 391 ~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~l-l~~~~g~~~l~~l~~~~ 468 (1522)
T TIGR00957 391 TAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYF-LWLNLGPSVLAGVAVMV 468 (1522)
T ss_pred HHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998855 4455555555555555544 443332 3344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (637)
Q Consensus 283 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (637)
+++.+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+....... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~ 544 (1522)
T TIGR00957 469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV----GT 544 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 55555566677788888888888999999999999999999999999999999988777666554443332222 11
Q ss_pred HHHHHH--HHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 006650 363 TLYRST--QVMAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (637)
Q Consensus 363 ~l~~~~--~~~~l~~g~~lv~~--g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~ 438 (637)
++.... .+.++.++++.+.. +.++.+.+++.+.+...+..|+..+...+..+.++..+.+|+.++++.++++....
T Consensus 545 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 624 (1522)
T TIGR00957 545 FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI 624 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 111111 22233455666664 56899999888888888999999999999999999999999999998654322110
Q ss_pred cccccc-cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 006650 439 EGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (637)
Q Consensus 439 ~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 517 (637)
...... ...+.|+++|++|+|+++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 625 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 699 (1522)
T TIGR00957 625 ERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---- 699 (1522)
T ss_pred cccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----
Confidence 111111 112479999999999753 34799999999999999999999999999999999999999999999997
Q ss_pred CCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHH
Q 006650 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (637)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQR 595 (637)
+|+||+|+|++|++||+|||.+|. ..++++.+++++.+++.++++.+|+|+||.+||+ +||||||||
T Consensus 700 ---------~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR 768 (1522)
T TIGR00957 700 ---------SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768 (1522)
T ss_pred ---------EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH
Confidence 599999999999999999999994 3577889999999999999999999999999984 999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+||||++++|+|+|||||||+||+++++.|.+.+.+
T Consensus 769 iaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998864
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.1e-58 Score=565.19 Aligned_cols=483 Identities=19% Similarity=0.214 Sum_probs=369.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 006650 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLC---VTSGIFSGLRSGCFSIANIVLVK 204 (637)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~---~~~~v~~~i~~~~~~~~~~~~~~ 204 (637)
+-++|.++...+..++..++.+..|+++...+......+.........+.++++ ++..++.....+.....+.++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~ 155 (1490)
T TIGR01271 76 RCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRI 155 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665666667778888999998887764321111000000111111111 22222333334444555666667
Q ss_pred HHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006650 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (637)
Q Consensus 205 ~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~ 284 (637)
.+...+|+|+++++...+++.++|++++++++|++++.+.+... ..++...+.+++++++++.+..+.+++.+++++++
T Consensus 156 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~ 234 (1490)
T TIGR01271 156 ALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILL 234 (1490)
T ss_pred HHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777799999999999999999999999999999999976543 44555666666777767666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 285 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 364 (637)
Q Consensus 285 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (637)
+.+..++.++..+..++..+..++..+.+.|.++|+++||+|+.|+.+.+++++..++-.+...+....... .......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~-~~~~~~~ 313 (1490)
T TIGR01271 235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYF-YSSAFFF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 777788888888888989999999999999999999999999999999988887776655555444332222 1111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 006650 365 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (637)
Q Consensus 365 ~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~-~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~ 443 (637)
....+.++.++++.+..| ++++.+++++.+...+..|+. .+...+..+.++.++++||.++++.++..... ..
T Consensus 314 -~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~~- 387 (1490)
T TIGR01271 314 -SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---YN- 387 (1490)
T ss_pred -HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---cc-
Confidence 222344556677776644 689999988888888877764 67778888899999999999999865432110 11
Q ss_pred ccCCCcEEEEEEEEECCCCC-------------------------------CcCcccceeEEeeCCCEEEEEcCCCCcHH
Q 006650 444 QRLMGHVQFVNISFHYPSRP-------------------------------TVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (637)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~-------------------------------~~~vL~~isl~I~~Ge~vAIVG~SGsGKS 492 (637)
.....|+++|++|+|++.. ..++|+|+||+|++||.++|+||+|||||
T Consensus 388 -~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS 466 (1490)
T TIGR01271 388 -LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466 (1490)
T ss_pred -CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence 1123699999999996310 13589999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHH
Q 006650 493 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572 (637)
Q Consensus 493 TL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI 572 (637)
||+++|+|+++|++|+|.+|| +|+||+|+|++|++||+|||.||. ..++++..++++.+++++++
T Consensus 467 TLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 467 SLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred HHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHHH
Confidence 999999999999999999998 599999999999999999999993 35667788889999999999
Q ss_pred HcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 573 LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 573 ~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
+.+|+|++|.+|++ +|||||||||+||||++++|+|+||||||||||+++++.|.+.++..+
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999984 999999999999999999999999999999999999999998765544
No 45
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-56 Score=530.58 Aligned_cols=486 Identities=19% Similarity=0.225 Sum_probs=359.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHH
Q 006650 129 RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL--RSG--CFSIANIVLVK 204 (637)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i--~~~--~~~~~~~~~~~ 204 (637)
-+++.+++..+...+........|.++...+....... .......++++..++..+...+ +.+ ...+.+.++..
T Consensus 198 ~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~--~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~ 275 (1381)
T KOG0054|consen 198 TFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR--LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRS 275 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC--cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHH
Confidence 35566655555555555557788988887764332211 1111112222221112222111 122 22234444555
Q ss_pred HHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006650 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (637)
Q Consensus 205 ~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~ 284 (637)
-+-..+|+|.++++-..-...++|++++-+++|++++.+.. ..+..+....+.+++++.+++..=-.-+++.+++..++
T Consensus 276 al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~ 354 (1381)
T KOG0054|consen 276 ALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLL 354 (1381)
T ss_pred HHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 55566699999998887778899999999999999999865 44566677777777776665433222233333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 285 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 364 (637)
Q Consensus 285 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (637)
+.+..+.+++.++.+++..+..++..+..+|.++||++||.|+.|+.+.++.++.-++-.+.-.|.....+.........
T Consensus 355 ~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~ 434 (1381)
T KOG0054|consen 355 IPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFS 434 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888888888889999999999999999999999999888887766554444444333332222211111
Q ss_pred HHHHHHHHHHHHHHH-HHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 006650 365 YRSTQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (637)
Q Consensus 365 ~~~~~~~~l~~g~~l-v~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~ 443 (637)
...+.++.++++. ...+.+|+...++.+.+...+-.|+..+...+..+.++.++.+|+.+++..+....+.......
T Consensus 435 --p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~ 512 (1381)
T KOG0054|consen 435 --PVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPD 512 (1381)
T ss_pred --HHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCC
Confidence 1223334455554 4456788888888888889999999999989999999999999999999865432221111122
Q ss_pred ccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH
Q 006650 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~ 523 (637)
.+.+..|+++|.+|++++....+.|+||||+||+|+.+||||+.|||||+|+..|+|..+..+|+|.++|.
T Consensus 513 ~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--------- 583 (1381)
T KOG0054|consen 513 EAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------- 583 (1381)
T ss_pred CCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---------
Confidence 23345799999999998643446999999999999999999999999999999999999999999999994
Q ss_pred HhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHH
Q 006650 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARA 601 (637)
Q Consensus 524 lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARA 601 (637)
++||||+|+||+|||||||.||. +.++++-+++++.|+++..++.||+|-.|.|||+ +|||||||||++|||
T Consensus 584 ----iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA 657 (1381)
T ss_pred ----EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence 99999999999999999999993 5789999999999999999999999999999996 999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
+|+|++|++||+|.||+|+++.+.|-+..+..+
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~ 690 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL 690 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh
Confidence 999999999999999999999999988876444
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.2e-56 Score=548.55 Aligned_cols=490 Identities=16% Similarity=0.180 Sum_probs=376.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 006650 123 MWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCV---TSGIFSGLRSGCFSIAN 199 (637)
Q Consensus 123 l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~---~~~v~~~i~~~~~~~~~ 199 (637)
++...+.+++.++..++..++..++.++.|+++...+......+. .......++.++++ +.+++...+.+...+.+
T Consensus 235 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 313 (1560)
T PTZ00243 235 LRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-TWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCG 313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777777888889999999999988776643211111 11111111112222 22233333344555666
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006650 200 IVLVKRLRETLYSALLFQDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (637)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~--~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~ 277 (637)
.++...+...+|+|+++++...+. +.++|++++.+++|++++.+++. .+..++...+.+++++++|..+-.+.+++.
T Consensus 314 ~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~g 392 (1560)
T PTZ00243 314 LQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMA 392 (1560)
T ss_pred HHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777788889999999999988776 45899999999999999999874 456677777887887877777766677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (637)
Q Consensus 278 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (637)
++++++++.+..++.++..+..++..+..++..+.++|.++|+++||.++.|+.+.+++++..++-.+...+........
T Consensus 393 v~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~ 472 (1560)
T PTZ00243 393 VAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVAT 472 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888888888888899999999999999999999999999999999887665555544433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--
Q 006650 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ-- 435 (637)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~-- 435 (637)
....... ...+.++.++++.+..|++|++.+++.+.+...+..|+..+...+..+.++.++++|+.++++.++...
T Consensus 473 ~~~~~~~--p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~ 550 (1560)
T PTZ00243 473 SFVNNAT--PTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCST 550 (1560)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 2211111 112233456788888999999999999999999999999999999999999999999999997643100
Q ss_pred --CC-c------------c--------------ccc---------------------------cccCCCcEEEEEEEEEC
Q 006650 436 --FL-S------------E--------------GVK---------------------------LQRLMGHVQFVNISFHY 459 (637)
Q Consensus 436 --~~-~------------~--------------~~~---------------------------~~~~~~~I~f~nVsF~Y 459 (637)
+. + + +.. .....+.+.++|++|++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1560)
T PTZ00243 551 VQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGS 630 (1560)
T ss_pred cccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccc
Confidence 00 0 0 000 00011357888988875
Q ss_pred CCC-------------------------------------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 460 PSR-------------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 460 ~~~-------------------------------------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
|.. .++++|+|+||+|++||+++|+|+||||||||+++|+|++
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~ 710 (1560)
T PTZ00243 631 PSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF 710 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 410 1235899999999999999999999999999999999999
Q ss_pred CCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccc
Q 006650 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582 (637)
Q Consensus 503 ~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~ 582 (637)
+|++|+|.++ ++||||+|+|++|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.
T Consensus 711 ~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~ 775 (1560)
T PTZ00243 711 EISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEADLAQLGGGLETE 775 (1560)
T ss_pred CCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHHHHHHhhccchHH
Confidence 9999999863 5799999999999999999999983 345678889999999999999999999999
Q ss_pred cCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 583 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 583 vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|++ +|||||||||+|||||+++|+|+|||||||+||+++++.+.+.++
T Consensus 776 i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~ 826 (1560)
T PTZ00243 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826 (1560)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 9984 999999999999999999999999999999999999988877654
No 47
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=3.2e-43 Score=387.43 Aligned_cols=451 Identities=17% Similarity=0.196 Sum_probs=334.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhH------HHHHHHHHHH
Q 006650 166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGG------LTSRLTADCQ 239 (637)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~------l~srl~~D~~ 239 (637)
|...+.....++.+++++..++...+.|+......+...-+...+.++.+.....|+. ...|. .=+|+..|+.
T Consensus 81 d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l-~~~~~~~~~dNpDQRi~eDi~ 159 (604)
T COG4178 81 DLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL-AQAGGIGLIDNPDQRIQEDIR 159 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HhcccccCCCChHHhHHHHHH
Confidence 4344444444455555555666667777777666666667777778888877744443 33332 2379999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 240 RLSNVIGNDINMILRNSLQGAGAFINLLTL---------------SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQE 304 (637)
Q Consensus 240 ~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~---------------sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~ 304 (637)
.+-+........++.++++.+...++++.. ...+..++++.++...++..++++..-++.-+.++
T Consensus 160 ~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~ 239 (604)
T COG4178 160 NFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQK 239 (604)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHH
Confidence 888766666666777777777666666532 23333344444444455556777887788877788
Q ss_pred HHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 305 CNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM---AYGLWNMSFITLYRSTQVMAVLLGGMSIM 381 (637)
Q Consensus 305 ~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~l~~g~~lv~ 381 (637)
..+.....+.-.-++.+.|-.|+.|+.|.++.++......+.-.+... .+.+++..... ...++-+.+++-...
T Consensus 240 ~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~---~s~v~P~li~ap~~f 316 (604)
T COG4178 240 LEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGW---LSVVLPILIAAPRYF 316 (604)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH---HHHHHHHHhccHhhh
Confidence 888888888889999999999999999988877776665553333222 22233332222 233445566666778
Q ss_pred hCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCcccccc--ccCCCcEEEE
Q 006650 382 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL------PSNQFLSEGVKL--QRLMGHVQFV 453 (637)
Q Consensus 382 ~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~------~~~~~~~~~~~~--~~~~~~I~f~ 453 (637)
.|+++.|.++.......++...+..+.+++..+..-.+...|+.++.+.- ++.......... ...+..|+|+
T Consensus 317 ~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 396 (604)
T COG4178 317 SGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLE 396 (604)
T ss_pred cCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEe
Confidence 99999999998888888888888888888888888888899998886432 111111000000 1114679999
Q ss_pred EEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEcc
Q 006650 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533 (637)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Q 533 (637)
||+..-|+.. ..++++||+++|||.+-|.|+||||||||++.|+|+++--+|+|-.-. -..+-|+||
T Consensus 397 nl~l~~p~~~--~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ 463 (604)
T COG4178 397 NLSLRTPDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQ 463 (604)
T ss_pred eeeEECCCCC--eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecC
Confidence 9999998653 689999999999999999999999999999999999999999986531 135899999
Q ss_pred CCccccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 006650 534 EPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612 (637)
Q Consensus 534 d~~LF~gTI~eNI~~g~~~-~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILD 612 (637)
.||+=.||+||=|+|-+.+ +.+|+|+.+++.++++.++++++.+ .+.. +.-||||||||||+||.|+++|++++||
T Consensus 464 ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~W--~~vLS~GEqQRlafARilL~kP~~v~LD 540 (604)
T COG4178 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDRW--DRVLSGGEQQRLAFARLLLHKPKWVFLD 540 (604)
T ss_pred CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCcH--hhhcChhHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999999998544 3899999999999999999999631 1111 2479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 613 EATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 613 EaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
|||||||.++|..+.+.+.++|.+
T Consensus 541 EATsALDe~~e~~l~q~l~~~lp~ 564 (604)
T COG4178 541 EATSALDEETEDRLYQLLKEELPD 564 (604)
T ss_pred cchhccChHHHHHHHHHHHhhCCC
Confidence 999999999999999998887654
No 48
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=347.52 Aligned_cols=489 Identities=19% Similarity=0.169 Sum_probs=347.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 123 MWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVL 202 (637)
Q Consensus 123 l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~ 202 (637)
++-..|++++.++..+.+...+++.++..-.++........ +... .......+++.+..+.+.+.+......++.+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~~--~~~~--~~l~~f~~llllf~~ss~is~lg~t~~gq~~ 79 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETA--DTSL--LVLPEFLGLLLLFMVSSLISQLGLTTLGQHF 79 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccce--eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888888888877777777766654433433332211 1100 1112233333334444555666666778888
Q ss_pred HHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006650 203 VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS 282 (637)
Q Consensus 203 ~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~ 282 (637)
..++|.++.++++.-|+.-+++-+++.++.++++|+..++ +-...++.+.+..+..+++++++.++|+++.+++++.+.
T Consensus 80 I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~iv 158 (546)
T COG4615 80 IYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIV 158 (546)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 444556778888889999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 006650 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK--ELGRYKIWLEKLAFIRIRESMAYGLWN-M 359 (637)
Q Consensus 283 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 359 (637)
+.++...+.+.+..+..+..++...+..+..+..++|.++++......+ ..++|....+...+...+ ...+. .
T Consensus 159 v~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~----~n~f~~l 234 (546)
T COG4615 159 VTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIR----ANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhh----hhHHHHH
Confidence 7766666655666666666777778888899999999999998754332 223333333333321111 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 006650 360 SFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (637)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~lv~~-g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~ 438 (637)
..+. .++....++....|+... +--+......+.+....+-.|+.++...+..+.++.+|++++.++-..++....+
T Consensus 235 a~~~-~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~- 312 (546)
T COG4615 235 AVNW-SNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP- 312 (546)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCC-
Confidence 1111 111111222222223322 2223334444555566677899999889999999999999999886544332221
Q ss_pred cccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 006650 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (637)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 518 (637)
...+.|+ -..||++||.|+|++. +.-+..||++|++||.|-|+|.+||||||+++||.|+|.|++|+|++||.|++.
T Consensus 313 ~~q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 313 RPQAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred CCCcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 1122223 4579999999999853 356889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEccCCccccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~-~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
=+++++|+.++-|+-|.|||+.++ | ++. ++.+.+..-++...+..-.. +.|| ...-.+||-|||.|+|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll------~-~e~~as~q~i~~~LqrLel~~kts-l~d~---~fs~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLL------G-PEGKASPQLIEKWLQRLELAHKTS-LNDG---RFSNLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhh------C-CccCCChHHHHHHHHHHHHhhhhc-ccCC---cccccccccchHHHHH
Confidence 999999999999999999999876 4 334 78887777666655443321 1111 0011289999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
+-=|++.+.||++|||=-+.=||.=.+..-+.++..|.+
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~ 497 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKE 497 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999988887777766543
No 49
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-44 Score=374.06 Aligned_cols=181 Identities=25% Similarity=0.433 Sum_probs=168.9
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
|+|+|+||+|+|++. +.++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 2469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~ 605 (637)
|+||||++.+|++|++||+.... ..++++++++++.+++++++.++|+||||.++|+ +||||||||++|||||+++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997541 3578899999999999999999999999999884 9999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+||||||||++||+++++.+++.+.+
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~ 183 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQ 183 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998754
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-45 Score=349.03 Aligned_cols=170 Identities=36% Similarity=0.495 Sum_probs=151.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC-CCCCHHHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di-~~i~~~~lR~~ 527 (637)
-|+++||+.+|.+ ..||+|||++|++||+++|+||||||||||+++|.|+-+|++|+|.+||.++ .+.+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999964 3699999999999999999999999999999999999999999999999877 34478899999
Q ss_pred eEEEccCCccc-cccHHHHHhcCCCC---CCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 528 IGFVGQEPQLL-QMDIKSNIMYGCPK---DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 528 I~~V~Qd~~LF-~gTI~eNI~~g~~~---~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
+|+|+|+..|| +-|+.||++++ |- ..+ ++.-.+.++++|+.|-.+..| .+||||||||+|||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~la-p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIA 148 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIA 148 (240)
T ss_pred cCeecccccccccchHHHHHHhh-hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHH
Confidence 99999999999 79999999998 41 122 234455678888888888777 67999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||.-+|+++++||||||||||.-..|.+.+.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~ 180 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999753
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-44 Score=344.76 Aligned_cols=180 Identities=33% Similarity=0.472 Sum_probs=157.6
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-----ceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-----G~I~idG~di~~--i~ 520 (637)
..++++|++|.|.+ ..+|+|||++|++++++|++|||||||||+++.+-|+.+..+ |+|.+||+|+.+ +|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999973 369999999999999999999999999999999999999987 999999999966 57
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
.-.+|++||+|+|.|.-|..||.||++||.. +..-||-++++++.|.++|.+.. .++.. ...|||||+||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~~s--a~~LSGGQQQR 157 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLHKS--ALGLSGGQQQR 157 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---HhhCC--ccCCChhHHHH
Confidence 9999999999999999999999999999921 11235678999999999998864 22211 13799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
+||||||.-+|+||+||||||||||.+..+|.+.| .+|.+
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi-~eLk~ 197 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELI-TELKK 197 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999975 55543
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=354.84 Aligned_cols=174 Identities=37% Similarity=0.523 Sum_probs=152.2
Q ss_pred EEEEEEEEECCCC--CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHH
Q 006650 450 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWL 524 (637)
Q Consensus 450 I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~---~~l 524 (637)
|+|+|||+.|+.. ....+|+||||+|++||+.+|||.||+|||||++++-|+-.|++|+|.+||+|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999862 12458999999999999999999999999999999999999999999999988877774 566
Q ss_pred hcceEEEccCCcccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
|++||+|+|++.|++ .|+.+|++|.-. ... -++++.+.++.+|+.|.-++-| .+||||||||+||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHHH
Confidence 788999999999998 999999998521 112 2356777888888888877655 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||..+|+||+.|||||||||+|.+.|.+.+.+
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~ 186 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKD 186 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999987543
No 53
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.4e-42 Score=344.19 Aligned_cols=182 Identities=36% Similarity=0.607 Sum_probs=169.4
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
++|+++||+|+|++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999753 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
++|++|++.+|++|++|||.+.+ ..+++++.++++..++.+++.++|.|++|.++. ..||||||||++|||||+++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998763 356788999999999999999999999999876 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++||||||++||+.+.+.+.+.+.+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~ 184 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIRE 184 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999988643
No 54
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.6e-42 Score=326.46 Aligned_cols=172 Identities=34% Similarity=0.497 Sum_probs=157.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~lR~ 526 (637)
|+|+||+.+|++. .++|+||||+|+|||.+-++|||||||||++|||++...|++|+|.++|+|+..+..+ .+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999975 4699999999999999999999999999999999999999999999999999887754 7999
Q ss_pred ceEEEccCCccc-cccHHHHHhcC-----CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF-~gTI~eNI~~g-----~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
+||+|+||..|. +.|+.||++|. .++..-.+++.++++.+|+.+-...|| ..|||||+||+||||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP---------~~LSGGEQQRvaIAR 150 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP---------SQLSGGEQQRVAIAR 150 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc---------cccCchHHHHHHHHH
Confidence 999999999977 78999999984 223334578899999999999999999 669999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|+..+|++||-||||.+||+++...|++.+ ++
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lf-ee 182 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLF-EE 182 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHH-HH
Confidence 999999999999999999999999999864 44
No 55
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1e-41 Score=345.95 Aligned_cols=181 Identities=46% Similarity=0.709 Sum_probs=166.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|+++ +.++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999743 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ 607 (637)
|++|++.+|+.|+.|||.++. ...+.+++.++++..+++++++.+|.|+++..+. ..||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALAD-PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999873 3455677888889999999999999999998876 4999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||||++||+++...+.+.+.+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998644
No 56
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=342.58 Aligned_cols=182 Identities=43% Similarity=0.743 Sum_probs=168.4
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
++|+++|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999742 359999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
++|++|++.+|++|++||+.++. ....++++.++++..++.++++.+|+|+++.++. ..||||||||++|||||+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGR-PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999884 3456678888999999999999999999999876 48999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||||++||+.+.+.+.+.+.+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~ 184 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEK 184 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999987644
No 57
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=359.86 Aligned_cols=178 Identities=36% Similarity=0.523 Sum_probs=152.5
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCC--CC
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT--DL 519 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~--~i 519 (637)
.+.|+|+||+|+|++. ..++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+++. ++
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4679999999999743 2469999999999999999999999999999999999997 57999999999997 45
Q ss_pred CHHHHhcceEEEccCCccccccHHHHHhcCCCC-CCCHHH-----HHHHHHHcCHHHHHHcCCCCcccccCCC--CCChH
Q 006650 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNED-----IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 591 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~~de~-----v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGG 591 (637)
+...+|+.++||||+|++|++||+|||.|+... ..++++ +.++++.+++ ++++++.+++. +||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 567899999999999999999999999987211 234444 3445566654 44566778774 99999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++||||++++|+|||||||||+||+++.+.+++.|.+
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~ 270 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE 270 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
No 58
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.3e-41 Score=338.25 Aligned_cols=183 Identities=44% Similarity=0.684 Sum_probs=168.0
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
++|+++|++++|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999753 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
++|++|++.+|..|++||+.++. ...+++++.++++..++.+.++++|.|++|.+.. ..||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGA-PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCC-CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999873 3445678888999999999999999999999876 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||||++||+++...+.+.+.+
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998644
No 59
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.3e-41 Score=339.79 Aligned_cols=186 Identities=48% Similarity=0.788 Sum_probs=168.2
Q ss_pred CCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh
Q 006650 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR 525 (637)
..+.|+++||+++|+++.+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999864334699999999999999999999999999999999999999999999999999888888889
Q ss_pred cceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 006650 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALl 603 (637)
+.|+|++|++.+|++|++||+.++. ...+.+++.+.++..+++++++.+|.|+++.++. ..||||||||++|||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGL-QSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcccc-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999873 3445556666777788999999999999998876 489999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++...+.+.+.+
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998654
No 60
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.9e-41 Score=332.65 Aligned_cols=175 Identities=40% Similarity=0.520 Sum_probs=149.0
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HH-
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL- 524 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~l- 524 (637)
|+++||+..|.... ...+|+|+||+|++||.|||+||||||||||+++|.++-.|++|+|.++|+|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 24699999999999999999999999999999999999999999999999999999853 33
Q ss_pred hcceEEEccCCccc-cccHHHHHhc----CCCCC-CCHHHHHHHHHHcCHHHHHH-cCCCCcccccCCCCCChHHHHHHH
Q 006650 525 REKIGFVGQEPQLL-QMDIKSNIMY----GCPKD-VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 525 R~~I~~V~Qd~~LF-~gTI~eNI~~----g~~~~-~~de~v~~A~~~a~l~~fI~-~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
|++||+|+|+.+|+ +-|++|||.+ ...+. ..++.+.+.++..++.+... +.| ..||||||||+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 56699999999988 6799999984 31111 22456677777778876665 444 579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||||+++|+|++.||||++||++|.+.|.+.+.+.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986554
No 61
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-42 Score=335.98 Aligned_cols=169 Identities=37% Similarity=0.563 Sum_probs=153.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||++|+|.|+.+|++|+|+|||.|+++++...||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999974 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccc-cccHHHHHhcCCCC--CCC----HHHHHHHHHHcCHH--HHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~~--~~~----de~v~~A~~~a~l~--~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
||-|..-|| +.||.|||++- |. ..+ ++++.+.++.++++ +|..+.| ..|||||+||+.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP---------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc---------hhcCcchhhHHHHHH
Confidence 999999999 89999999875 31 123 45566777788875 4777766 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||..+|+|+++|||.||||+.|..++|+-++
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~ 179 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIK 179 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHH
Confidence 9999999999999999999999999999864
No 62
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.7e-41 Score=344.19 Aligned_cols=185 Identities=29% Similarity=0.491 Sum_probs=169.9
Q ss_pred cCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH
Q 006650 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l 524 (637)
...+.|+++||+++|++. +..+|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|++||+++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 456789999999999753 2469999999999999999999999999999999999999999999999999999998899
Q ss_pred hcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHH
Q 006650 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAI 602 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARAL 602 (637)
|+.|+||+|++.+|++|++||+.+. + ...++++.++++.++++++++.+|.|++|.+++ ..||||||||++|||||
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPE-C-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcC-C-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999765 2 235677888999999999999999999999987 49999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|||||||++||++++..+.+.+.+
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMT 201 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999887643
No 63
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-41 Score=339.76 Aligned_cols=180 Identities=48% Similarity=0.738 Sum_probs=167.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999742 35999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ 607 (637)
|++|++.+|++|++||+.++. .+.+++++.++++.+++.+++..+|.|++|.++. ..||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGR-PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcC-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999984 3556778888999999999999999999999876 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||||++||+++...+.+.+.+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988643
No 64
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-41 Score=338.35 Aligned_cols=181 Identities=50% Similarity=0.792 Sum_probs=166.8
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++++|+++ +.++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999753 236999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ 607 (637)
|++|++.+|+.|++||+.++. ...+.+++.++++..+++++++.+|+|+++.++. ..||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999984 3456677888899999999999999999998876 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++||||||++||+.+...+.+.+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 65
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.7e-41 Score=331.17 Aligned_cols=170 Identities=35% Similarity=0.477 Sum_probs=154.8
Q ss_pred EEEEEEEEECCCCCC--cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
|+++||+++|+++.+ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975321 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
|+||+|++++|++|++||+.++. ..+++++.++++.+++.+++..+|.|++|.++. ..||||||||++|||||+++
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973 345677888999999999999999999999986 48999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|+++||||||++||+++.+.+.+.+++.+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~ 174 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGL 174 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998888655544
No 66
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.4e-40 Score=337.81 Aligned_cols=182 Identities=58% Similarity=0.928 Sum_probs=166.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++++|+++.+.++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57999999997533346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ 607 (637)
|++|++.+|+.|++||+.++. .....+++.+.++..++.+++..+|.|+++.++. ..||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccC-CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 3445677888888889999999999999999876 4999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||||++||+.+.+.+.+.+.+
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~ 184 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDR 184 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 67
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-41 Score=330.41 Aligned_cols=168 Identities=34% Similarity=0.506 Sum_probs=150.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.+++++|+.+|++ ..||+|+||+|++||+|+||||||||||||+++++|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999975 4699999999999999999999999999999999999999999999999988543 4689
Q ss_pred EEEccCCcccc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
+||+|++.||. -|++||+.+|... ....+.+.++++.+|+.+|-+..| ..||||||||+||||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHH
Confidence 99999999995 8999999998321 112457888999999999988877 67999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
..+|++|+||||.||||+.|...+|+-+++-
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987654
No 68
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-40 Score=333.67 Aligned_cols=173 Identities=36% Similarity=0.545 Sum_probs=150.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~lR~ 526 (637)
|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999743 23699999999999999999999999999999999999999999999999999877643 4788
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
.++||+|++.+|. .|++||+.++.. +...++++.++++..++.++.++.| ..||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999987 599999987511 1123456788888888887776655 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987643
No 69
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=347.76 Aligned_cols=170 Identities=35% Similarity=0.510 Sum_probs=155.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+.+|++. .+++|+||+|+.||.++|+|||||||||++++|+||.+|++|+|+|||.++++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 69999999999742 2999999999999999999999999999999999999999999999999999999885 899
Q ss_pred EEEccCCccc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~~-----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|+|+|+.-|| +.|++|||+|+-. .+..++++.++++..++++.+++.| ..||||||||+||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHHHH
Confidence 9999999999 5599999999832 1234778999999999999999988 67999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++++||||.|+||++....+...|.+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence 999999999999999999999888877643
No 70
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.2e-40 Score=329.29 Aligned_cols=181 Identities=27% Similarity=0.393 Sum_probs=162.2
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHHhc
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE 526 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~----~~lR~ 526 (637)
.+.|++|+|+++ .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999854 469999999999999999999999999999999999999999999999999877653 34677
Q ss_pred ceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk 604 (637)
.++|++|++.+|+.|++|||.++. ..++++..++++..++.++++.+|.|++|.++. ..||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999873 245667788999999999999999999999876 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhh
Q 006650 605 DPAILLLDEATSALDSESEHYVKAN-TLDSLL 635 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~-il~~l~ 635 (637)
+|++|||||||++||.++...+.+. +++.+.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~ 189 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998884 566554
No 71
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.4e-40 Score=351.66 Aligned_cols=174 Identities=32% Similarity=0.445 Sum_probs=151.4
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~---lR 525 (637)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997422 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
++||||+|++.+|. .|++||++++.. ...+ ++++.++++.+++.++.++.| ..||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999995 899999998621 1122 345677888888887766554 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+.+|++||||||||+||+++...+.+.+.+
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~ 185 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKE 185 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999987643
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-40 Score=332.72 Aligned_cols=172 Identities=32% Similarity=0.462 Sum_probs=155.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.++++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||+|+.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999974 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccC-CccccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 529 GFVGQE-PQLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 529 ~~V~Qd-~~LF~gTI~eNI~~g~~~~---------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
|||||+ +.-|.-|++|=+.+|+.|. .+++.+.+|++..++.++.++. =..||||||||+.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---------~~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---------VDELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---------ccccChhHHHHHHH
Confidence 999999 5688999999999996431 2334688899999999997651 14799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||.++|+||+||||||+||....-.|++.+.+
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997643
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.9e-40 Score=331.42 Aligned_cols=173 Identities=35% Similarity=0.543 Sum_probs=151.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEECCEeCCCCC--HH
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR 522 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y-----~p~~G~I~idG~di~~i~--~~ 522 (637)
|+++||+|+|+++ ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|+++.+++ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5799999999743 6999999999999999999999999999999999999 999999999999998877 66
Q ss_pred HHhcceEEEccCCccccccHHHHHhcCCCC-CC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
.+|++|+||+|++.+|+.|++||+.++... .. .++++.++++..++.+.+.+.++ ...||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH-------ALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC-------cccCCHHHHHHH
Confidence 788999999999999999999999875211 11 23567778888888776665432 357999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 186 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAE 186 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998644
No 74
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-40 Score=332.89 Aligned_cols=171 Identities=29% Similarity=0.440 Sum_probs=146.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~---~~lR~ 526 (637)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 579999999964 359999999999999999999999999999999999999999999999999988764 57889
Q ss_pred ceEEEccCCccccc-cHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQM-DIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 527 ~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
.|+||+|++.+|.+ |++||+.++.. ...+. +++.++++..++.++.++.| ..||||||||++||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999986 99999987621 11232 34555666666655543322 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+++|++|||||||++||+++...+.+.+.+
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998643
No 75
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-40 Score=318.77 Aligned_cols=174 Identities=34% Similarity=0.503 Sum_probs=153.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---HHHHh
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~---~~~lR 525 (637)
.|+++||+-.||++ ..+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++.... .+.+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999964 47999999999999999999999999999999999999999999999999998888 66889
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGG 591 (637)
++||+++|++-|-. -|+.+|+..|+-. ..+..+..+|++.+|+.|+.-+- .++||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 99999999999985 5799999877421 12334567788888888876541 2589999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|+||+||||||.++|+|++-|||||+||+++.++|++.+.+.
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987554
No 76
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.5e-40 Score=327.98 Aligned_cols=174 Identities=39% Similarity=0.484 Sum_probs=145.5
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH----H
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----L 524 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~----l 524 (637)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57999999997521 136999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcceEEEccCCccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 525 REKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
|+.++||+|++.+|.+ |++||+.++.. ...+ ++++.++++..+++++.++.| ..||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 6789999999999986 99999998621 1111 235566666666655544332 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRE 185 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998644
No 77
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=326.62 Aligned_cols=172 Identities=31% Similarity=0.541 Sum_probs=151.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+|+|.++ ++|+||||+|++|+++|||||+|||||||+|+++|+.+|++|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999743 59999999999999999999999999999999999999999999999998877543 6799
Q ss_pred EEEccCC---ccccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 529 GFVGQEP---QLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 529 ~~V~Qd~---~LF~gTI~eNI~~g~~~~---------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
|||||.. +=|.-|++|=+.+|+... .+.+++.+|++.+++.++.++ .+ +.|||||+||+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i--~~LSGGQ~QRV 148 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QI--GELSGGQKQRV 148 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cc--cccCcHHHHHH
Confidence 9999965 569999999999984322 235899999999999998764 12 36999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
.|||||..||++|+|||||+++|+.++..+.+. +++|.+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~ 187 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQ 187 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999986 566654
No 78
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.3e-39 Score=325.36 Aligned_cols=172 Identities=34% Similarity=0.487 Sum_probs=150.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~lR~ 526 (637)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 7899999999632 3699999999999999999999999999999999999999999999999999887643 5788
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
.++|++|++.+|. .|++||+.++.. +...++++.++++..++.++..+.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999996 699999987511 1123456778888888877766554 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++|||||||++||+++...+.+.+.+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998654
No 79
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=328.92 Aligned_cols=174 Identities=32% Similarity=0.423 Sum_probs=145.6
Q ss_pred cEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---H
Q 006650 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~---l 524 (637)
-|+++||+|+|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997532 136999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEccCCccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 525 R-EKIGFVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 525 R-~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
| +.|+||+|++.+|.+ |++||+.++.. ... .++++.++++..++.++..+.| ..||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 3 679999999999975 99999987411 011 2234566666666655443322 479999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||++++|++|||||||++||+++...+.+.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 189 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLG 189 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 80
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-39 Score=342.74 Aligned_cols=178 Identities=31% Similarity=0.462 Sum_probs=146.2
Q ss_pred CcEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC------
Q 006650 448 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------ 519 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i------ 519 (637)
.-|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997431 23699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEccCC--ccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcc-cccCC
Q 006650 520 ----------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD 585 (637)
Q Consensus 520 ----------~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~d-T~vge 585 (637)
+...+|++|+||+|++ .+|++|++|||.++.. ...++++..+ . +++++..+ |++ ...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3567899999999998 7999999999998721 1234443322 1 22444443 443 23343
Q ss_pred --CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 586 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 586 --~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.+||||||||++|||||+++|++||||||||+||+.+++.+.+.+.+
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~ 221 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD 221 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999998643
No 81
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=337.64 Aligned_cols=175 Identities=37% Similarity=0.523 Sum_probs=154.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743223599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+||+|++ .++..|++|||.++.. ...+ ++++.++++..+++++.++.| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4677899999998721 1122 356788888889988877655 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++|||||||++||+.+.+.+.+.+.+
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999987643
No 82
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=327.92 Aligned_cols=174 Identities=36% Similarity=0.562 Sum_probs=156.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC-CCCHHHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~-~i~~~~lR~~ 527 (637)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|+|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999875 47999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEccCC--ccccccHHHHHhcCCCCC--CCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 528 IGFVGQEP--QLLQMDIKSNIMYGCPKD--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 528 I~~V~Qd~--~LF~gTI~eNI~~g~~~~--~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
||+|+|+| .+|..||.|.++|| +.+ .+. +++.++++.++++++-++-| .+||||||||+|||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg-~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p---------~~LSGGqkqRvaIA 150 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFG-LENLGLPREEIEERVAEALELVGLEELLDRPP---------FNLSGGQKQRVAIA 150 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhc-hhhcCCCHHHHHHHHHHHHHHcCchhhccCCc---------cccCCcceeeHHhh
Confidence 99999999 89999999999999 432 333 45777889999988865544 58999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
.+|..+|++||||||||+||+...+.+.+.+ ..|.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l-~~L~ 185 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELL-KKLK 185 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999975 4443
No 83
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-40 Score=326.85 Aligned_cols=169 Identities=34% Similarity=0.532 Sum_probs=145.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..++.|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999974 36999999999999999999999999999999999999999999999999998755 3578899
Q ss_pred EEccCCcccc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|. .|++||+.++... .. .++++.++++..++.++.++.| ..||||||||++|||||+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999986 6999999876211 11 1345666777777766655543 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++.+.+.+.+.+
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998644
No 84
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.8e-39 Score=324.19 Aligned_cols=172 Identities=34% Similarity=0.525 Sum_probs=148.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~---~~lR~ 526 (637)
|+++||+++|+++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999743 359999999999999999999999999999999999999999999999999988764 35788
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
.|+||+|++.+|. .|++||+.++.. ... .++++.++++..++++..++.| ..||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 9999999999998 599999987521 111 2345677777777776655543 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|+++||||||++||+++.+.+.+.+.+
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998644
No 85
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-39 Score=324.01 Aligned_cols=168 Identities=35% Similarity=0.521 Sum_probs=146.7
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ ..+|++|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 478999999752 369999999999999999999999999999999999999999999999998864 467889999
Q ss_pred EccCC--ccccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 006650 531 VGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 531 V~Qd~--~LF~gTI~eNI~~g~~~-~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ 607 (637)
++|++ .+|+.|++||+.++... ...++++.++++..++.++.++.| ..||||||||++|||||+++|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP---------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc---------hhCCHHHHHHHHHHHHHHhCCC
Confidence 99998 47899999999986321 123457888899998887766655 3799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||||++||+++.+.+.+.+.+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~ 171 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRE 171 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 86
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-39 Score=304.89 Aligned_cols=167 Identities=37% Similarity=0.527 Sum_probs=150.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|.+++|.|+|...+ =.++++|++||+|||+||||||||||++|++||..|.+|+|+|||+|...-.+. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56899999996432 367899999999999999999999999999999999999999999999887765 57899
Q ss_pred EEccCCccc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
+++||..|| +-||++||.+|..|. .+.++++.|+.++|+.+|..+|| ..||||||||+|+||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHh
Confidence 999999999 689999999996543 35678999999999999999999 679999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+-|||+||||.||||+.-.+.....+.+
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQ 174 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHH
Confidence 99999999999999999998888776543
No 87
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.6e-39 Score=324.08 Aligned_cols=173 Identities=27% Similarity=0.422 Sum_probs=146.7
Q ss_pred EEEEEEEEECCCCCC-cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
|+++||+++|+++.. .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||+++.. ....+|++|
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975321 169999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEccCCccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
+|++|++.+|.+ |++||+.+... ... .++++.++++..++.++.++.+ ..||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 999999999985 99999986421 111 2345666777777766554422 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|||||||++||+++.+.+.+.+.+
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999997643
No 88
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.8e-39 Score=324.55 Aligned_cols=174 Identities=33% Similarity=0.476 Sum_probs=144.8
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~---lR 525 (637)
|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999997432 136999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 526 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++++...+.| ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 68999999999995 699999987411 0111 234555666666655444332 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++...+.+.+.+
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 186 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998643
No 89
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-39 Score=323.58 Aligned_cols=172 Identities=38% Similarity=0.574 Sum_probs=147.9
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
+++||+++|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999752 2369999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EccCC--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 531 VGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 531 V~Qd~--~LF~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
++|++ .+++.|++||+.++.. ...+ ++++.++++..++.+++++.| ..||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99998 4678999999987521 1112 235566777777766655443 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++.+.+.+.+.+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998643
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-39 Score=333.79 Aligned_cols=173 Identities=27% Similarity=0.451 Sum_probs=153.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+|+|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999742 3699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+||+|++ .+|..|+.||+.++.. ...+ ++++.++++..++.++.++.| ..||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---------YHLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 9999998 6899999999998721 1122 356778888888888777665 3799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++|||||||++||+.+...+.+.+.+
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988643
No 91
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.7e-39 Score=327.50 Aligned_cols=172 Identities=34% Similarity=0.507 Sum_probs=145.4
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~---~~lR~ 526 (637)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 7899999999622 369999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQ 592 (637)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.++.++.+ ..|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---------DQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHH
Confidence 9999999999986 6999999876211 112345566666666665544321 4799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||++|||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987644
No 92
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-39 Score=327.51 Aligned_cols=172 Identities=34% Similarity=0.516 Sum_probs=145.4
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---HHHHhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~---~~~lR~ 526 (637)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 5799999999742 36999999999999999999999999999999999999999999999999998877 467889
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQ 592 (637)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.++..+. -..|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR---------ADQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC---------cccCCHHH
Confidence 9999999999887 6999999875210 11234455666666665443321 14799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||++|||||+++|++||||||||+||+.+...+.+.+.+
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997644
No 93
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.5e-39 Score=320.89 Aligned_cols=169 Identities=23% Similarity=0.375 Sum_probs=149.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 579999999964 3699999999999999999999999999999999999999999999999988765 56788999
Q ss_pred EEccCCccc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ 607 (637)
||+|++.+| +.|++||+.++.. ...+++++.++++..++++..++.| ..||||||||++||||++++|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999988 5899999987521 1235678888999999887765432 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||||++||+++.+.+.+.+.+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~ 171 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILS 171 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-39 Score=321.38 Aligned_cols=168 Identities=28% Similarity=0.436 Sum_probs=146.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+|+++ ++|+|+||++++| ++||+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5799999999642 6999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEccCCccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|.+ |++||+.+... ... .++++.++++..++.++.+..| ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 99999999986 99999987411 011 1346777888888876654322 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++|++|||||||++||+++.+.+.+.+.
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~ 174 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLS 174 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999998763
No 95
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-39 Score=340.33 Aligned_cols=171 Identities=32% Similarity=0.540 Sum_probs=154.6
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|+++||+-+|.+ ..+++|+||+|++||.++++|||||||||++++|+||.+|++|+|.+||+|+.++.++ ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 36999999999972 4799999999999999999999999999999999999999999999999999998866 689
Q ss_pred eEEEccCCccc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 528 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 528 I~~V~Qd~~LF-~gTI~eNI~~g~~--~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
||+|+|+.-|| +.||+|||+||-. .... ++++.++++.+++.+|-.+.| ..|||||+||+||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p---------~qLSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP---------HQLSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh---------hhhChHHHHHHHHHH
Confidence 99999999999 8999999999943 1122 248899999999999877766 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||..+|++|+||||.||||.+-...++..+.+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~ 181 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKE 181 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999998887533
No 96
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.2e-39 Score=323.59 Aligned_cols=165 Identities=29% Similarity=0.523 Sum_probs=143.3
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 47899999974 35999999999999999999999999999999999999999999999998764 47889999
Q ss_pred EccCCcc---ccccHHHHHhcCCCC---------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 531 VGQEPQL---LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 531 V~Qd~~L---F~gTI~eNI~~g~~~---------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
|+|++.+ |+.|++||+.++... ...++++.++++..++.++.++.| ..||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999987 678999999886321 012356777888888877765533 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++...+.+.+.+
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998654
No 97
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-38 Score=316.71 Aligned_cols=166 Identities=32% Similarity=0.542 Sum_probs=146.7
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
+.|+++|++++|++. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 579999999999753 2369999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ 607 (637)
|+||+|++.+|++|++|||.+.+ ..+++++.++++ ++. ....|||||+||++||||++++|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~--------------~~~--~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR--------------VSE--GGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh--------------ccC--CCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998762 345566655554 111 124899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++||||||++||+++...+.+.+.+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~ 170 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIRE 170 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 98
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=6.8e-39 Score=322.11 Aligned_cols=172 Identities=29% Similarity=0.441 Sum_probs=146.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~---lR~ 526 (637)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999532 36999999999999999999999999999999999999999999999999998876543 788
Q ss_pred ceEEEccCCcc-ccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQL-LQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~L-F~gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
.++||+|++.+ ++.|++||+.++.. ...++ +++.++++..++.++.++.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 99999999987 57899999987521 12222 24556777777766655433 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++++|++|||||||++||+++.+.+.+.+.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987643
No 99
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-39 Score=343.59 Aligned_cols=171 Identities=29% Similarity=0.492 Sum_probs=151.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|+++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+++.+ ++.|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 48999999999532 3699999999999999999999999999999999999999999999999999887754 5799
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999994 699999998732 1122 356788899999998888776 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|+||||||+||+.+...+.+.+.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998643
No 100
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-39 Score=342.70 Aligned_cols=174 Identities=34% Similarity=0.475 Sum_probs=147.7
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~---lR 525 (637)
|+++||+|+|+++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 246999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
++||||+|++.+|. .|++||+.++.. ...++ +++.++++..++.++.++.| ..||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999996 799999987621 11222 34556666666665554433 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+++|++||||||||+||+++...+.+.+.+
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~ 185 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKD 185 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998644
No 101
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=324.54 Aligned_cols=172 Identities=38% Similarity=0.612 Sum_probs=148.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+|+|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 58999999999642 599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 529 GFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
+|++|++.+|+.|++||+.++.. .+..++++.++++..++. ++..+. -..||||||||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD---------VKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC---------cccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998621 112234566666666663 332221 1479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||||++||+++...+.+.+.+
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 102
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-39 Score=327.75 Aligned_cols=176 Identities=32% Similarity=0.455 Sum_probs=150.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHHh
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~i~~~~lR 525 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 369999999999999999999999999999999999985 6999999999999988888899
Q ss_pred cceEEEccCCccccccHHHHHhcCCC-------CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~gTI~eNI~~g~~-------~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+.|+|++|++.+|+.|++||+.++.. .+..++++.++++..++++++..+. +. ....||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL---KQ--NALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh---cC--CcccCCHHHHHHHHH
Confidence 99999999999999999999987621 0112345677888888876654321 11 124899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++...+.+.+.+
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987644
No 103
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.9e-39 Score=320.33 Aligned_cols=169 Identities=33% Similarity=0.538 Sum_probs=145.5
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 5799999999753 699999999999999999999999999999999999999999999999999776543 57899
Q ss_pred EEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++.++.| ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999995 699999987521 1112 235566777777777666544 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|+++||||||++||+++...+.+.+.+
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998654
No 104
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.2e-39 Score=321.32 Aligned_cols=172 Identities=26% Similarity=0.469 Sum_probs=144.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5799999999752 13699999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEccCCccc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+| +.|++||+.++.. ...+ ++++.++++..++.+..+..+ ..||||||||++|||||+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA---------RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh---------hhCCHHHHHHHHHHHHHh
Confidence 999999999 6899999987421 1112 234556666666655443221 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+.+...+.+.+.+
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987643
No 105
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.6e-38 Score=314.63 Aligned_cols=169 Identities=24% Similarity=0.397 Sum_probs=149.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGR---ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCc---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 5789999999743 5999999999999999999999999999999999999999999999999987654 57889999
Q ss_pred EEccCCccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~I 608 (637)
|++|++.++ +.|++||+.+.. +..+++++.++++..++.++.++.+ ..||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFEDRPV---------AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhcCch---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 689999998873 3446778888999999876543321 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+||||||++||+++.+.+.+.+.+
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAG 170 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997644
No 106
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.5e-39 Score=319.96 Aligned_cols=171 Identities=37% Similarity=0.497 Sum_probs=144.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhcc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 527 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--i~~~~lR~~ 527 (637)
|+++||+++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 579999999974 359999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
|+||+|++.+|. .|++||+.++.. ...+. +++.++++..++.+..++.| ..||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 999999999996 699999987521 12222 34455555555555444433 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++++|++|||||||++||+++.+.+.+.+.+
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 180 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKD 180 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998643
No 107
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-38 Score=320.52 Aligned_cols=171 Identities=29% Similarity=0.449 Sum_probs=140.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~~I 528 (637)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.... |+.|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999974 369999999999999999999999999999999999999999999999999988887654 6789
Q ss_pred EEEccCCccccc-cHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
+||+|++.+|.+ |++||+.++.. ... .+++.++++.. ..+++.+++.+ ..||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~------~~l~~~~~~~~--~~LS~G~~qrv~laral~ 148 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKARLERVYELF------PRLKERRKQLA--GTLSGGEQQMLAIARALM 148 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHHHHHHHHHH------HhhhhhhhCch--hhCCHHHHHHHHHHHHHh
Confidence 999999999986 99999998732 111 11222222222 11222223221 379999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++...+.+.+.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998643
No 108
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-39 Score=322.02 Aligned_cols=169 Identities=36% Similarity=0.540 Sum_probs=145.4
Q ss_pred EEEEEEEEECCCCCC-cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
|+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 579999999975211 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
+||+|++.+|. .|++||+.++.. ... .++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999998 799999987521 111 2356677788888877666554 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|||||||++||+++.+.+.+.+.+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998644
No 109
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.8e-38 Score=320.20 Aligned_cols=175 Identities=29% Similarity=0.397 Sum_probs=149.9
Q ss_pred cEEEEEEEEECCCCCC-cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---H
Q 006650 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~---l 524 (637)
-|+++||+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 25999999999999999999999999999999999999999999999999998887653 2
Q ss_pred -hcceEEEccCCccccc-cHHHHHhcCCC-C----CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 525 -REKIGFVGQEPQLLQM-DIKSNIMYGCP-K----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 525 -R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~----~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
++.++|++|++.+|.+ |++||+.++.. . ....+++.++++..++.++..+.| ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 3689999999999985 99999986410 1 112456777888888877776654 479999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998644
No 110
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=9.2e-39 Score=323.96 Aligned_cols=173 Identities=27% Similarity=0.455 Sum_probs=142.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~~I 528 (637)
|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 578999999974 359999999999999999999999999999999999999999999999999998887654 5779
Q ss_pred EEEccCCccccc-cHHHHHhcCCCCC-C----------CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHH
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCPKD-V----------KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~~~-~----------~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQ 594 (637)
+||+|++.+|.+ |++|||.++.... . ..++. ...+++.++.+ |++...+. ..|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 9999998863211 0 01111 11233444443 44444333 489999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 188 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997643
No 111
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-39 Score=324.85 Aligned_cols=170 Identities=32% Similarity=0.475 Sum_probs=144.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3889999999974 369999999999999999999999999999999999999999999999999876653 36789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCCC-CC----C----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV----K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~~-~~----~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+||+|++.+|. .|++||+.++... .. + ++++.++++..+++++.++.| ..||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 99999999996 6999999986211 11 1 234566677777665555433 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997643
No 112
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=332.40 Aligned_cols=174 Identities=34% Similarity=0.536 Sum_probs=145.2
Q ss_pred cEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--HHHH
Q 006650 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWL 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~--~~~l 524 (637)
.|+++||+|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999997422 136999999999999999999999999999999999999999999999999998754 4578
Q ss_pred hcceEEEccCC--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHH
Q 006650 525 REKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQR 595 (637)
Q Consensus 525 R~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQR 595 (637)
|++||||+|++ .+|+.|++|||.++.. ...+.+ ++.++++.+++. +++.... ..||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 89999999998 6889999999998621 123333 445566666653 1122222 4899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++|||||+.+|++|||||||++||+.+...+.+.+.
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~ 188 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999764
No 113
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=331.83 Aligned_cols=174 Identities=28% Similarity=0.480 Sum_probs=145.4
Q ss_pred EEEEEEEEECCCCCC--cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CCHHH
Q 006650 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRW 523 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----i~~~~ 523 (637)
|+++||+|+|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--ccccccHHHHHhcCCCCC--CCH----HHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHH
Q 006650 524 LREKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKN----EDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 524 lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~~~--~~d----e~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
+|+.||||+|+| .+|+.|+.|||.++ +.. .+. +++.++++..++. ++..+.| ..|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP---------FELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCc---------ccCCHHHHH
Confidence 899999999988 89999999999987 321 222 3355556666653 3333221 489999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|++|||||+.+|++|||||||++||+.+...+.+.+ +.+
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l-~~l 190 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF-ESI 190 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999865 444
No 114
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-39 Score=341.48 Aligned_cols=170 Identities=32% Similarity=0.505 Sum_probs=150.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999964 359999999999999999999999999999999999999999999999999988764 36889
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.||. .|++|||+|+.. ... .++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALARAL 151 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 599999998732 111 2457788888888887766655 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|+||||||+||+.+...+.+.+.+
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRE 181 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999997643
No 115
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=321.92 Aligned_cols=174 Identities=34% Similarity=0.461 Sum_probs=147.9
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHh
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~lR 525 (637)
|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 12699999999999999999999999999999999999999999999999999887654 357
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
+.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++.++.| ..||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 89999999999997 699999987521 1112 345666777777766655433 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+++|++|||||||++||+++...+.+.+.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRD 185 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998654
No 116
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=329.40 Aligned_cols=174 Identities=36% Similarity=0.548 Sum_probs=154.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+|+|+++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999743 24699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+||+|++ .+++.|++|||.++... ..+ ++++.++++..+++++++..| ..||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP---------HRLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 57788999999886211 122 345788888889988888766 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++|||||||++||+.+.+.+.+.+.+
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998643
No 117
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.2e-38 Score=325.01 Aligned_cols=190 Identities=30% Similarity=0.445 Sum_probs=163.0
Q ss_pred HHHHHHhhcCCCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 422 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 422 ~ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+.+.+++..++++. +..+.+...+.|+++||++. + .++|+|+||+|++||++||+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46677776654322 22333445567999999995 2 2599999999999999999999999999999999999
Q ss_pred CCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccc
Q 006650 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581 (637)
Q Consensus 502 y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT 581 (637)
++|++|+|.+|| .|+|++|++++|++|++||+.++. ...+.++.++++.+++.+.+..+|++++|
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999998 399999999999999999999873 23445677788888999999999999999
Q ss_pred ccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 582 LVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 582 ~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
.+++ ..||||||||++|||||+++|++|||||||++||+++...+.+.+++.+
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~ 206 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL 206 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence 9876 4899999999999999999999999999999999999999988765544
No 118
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.6e-38 Score=324.57 Aligned_cols=175 Identities=34% Similarity=0.502 Sum_probs=146.8
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCCC--CHH
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR 522 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~i--~~~ 522 (637)
|+++||+++|++. .+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||+++.+. +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999742 5999999999999999999999999999999999999998 99999999999763 456
Q ss_pred HHhcceEEEccCCccccccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
.+|+.|+||+|++.+|..|++||+.++.. .. ..++++.++++..++.+++... .+.. -..||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgG~~qrv 153 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR---LHDS--ALGLSGGQQQRL 153 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH---hhCC--cccCCHHHHHHH
Confidence 78899999999999999999999987521 11 1134566777777776443211 1111 147999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|+++||||||++||+.+...+.+.+.+
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987643
No 119
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-38 Score=318.23 Aligned_cols=171 Identities=25% Similarity=0.369 Sum_probs=147.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEE
Confidence 579999999964 369999999999999999999999999999999999999999999999999875 3467788999
Q ss_pred EEccCCccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|.. |++||+.++.. ... .++++.++++..++.++.++.| ..||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999987411 011 2346777888888877665543 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
.+|++|||||||++||+++.+.+.+.+.+.
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999886543
No 120
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-38 Score=324.71 Aligned_cols=167 Identities=34% Similarity=0.431 Sum_probs=147.2
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. .+|+.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999974 36999999999999999999999999999999999999999999999998763 56789
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
++||+|++.+|. .|++||+.++. ....++++.++++..++.++.++.| ..||||||||++|||||+++|
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGL-KGQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRP 152 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcc-cchHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999997 69999999873 2234567888888888876655433 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||||++||+.+...+.+.+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999997644
No 121
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-38 Score=327.90 Aligned_cols=174 Identities=36% Similarity=0.597 Sum_probs=151.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|+++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999742 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--ccccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+||+|++ .+++.|++|||.++... ..+.+ ++.++++..++.++.++.| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 46678999999986211 12222 3566778888877776654 5899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++|||||||++||+.+.+.+.+.+.+
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988644
No 122
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-38 Score=312.78 Aligned_cols=170 Identities=23% Similarity=0.427 Sum_probs=143.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999974 359999999999999999999999999999999999999999999999999875 4467889999
Q ss_pred EEccCCccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~I 608 (637)
|++|++.++ ..|++||+.++......++++.++++..++.+.. +..+ ..||||||||++||||++++|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC--GLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh--hhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999997 6899999998721122233455555555543322 2221 36999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||||++||+++...+.+.+.+
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQE 172 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999998754
No 123
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=330.92 Aligned_cols=177 Identities=31% Similarity=0.505 Sum_probs=144.5
Q ss_pred cEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHH
Q 006650 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i----~~~ 522 (637)
.|+++||+|+|+++. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997432 13699999999999999999999999999999999999999999999999999754 346
Q ss_pred HHhcceEEEccCC--ccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCccccc-CC--CCCChHHHHHH
Q 006650 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD--DLLSGGQKQRI 596 (637)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~v-ge--~~LSGGQkQRI 596 (637)
.+|++||||+|++ .+|+.|+.|||.++.. ...+.++..+. +++.+..+ |+++.. .. ..||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999997 6999999999998721 12333333221 22334433 555432 22 48999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+.+|++|||||||++||+.+...+.+.+.+
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997643
No 124
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=325.59 Aligned_cols=176 Identities=34% Similarity=0.479 Sum_probs=148.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i~~ 521 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999974 2599999999999999999999999999999999999997 48999999999853 345
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCCC-C-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
..+|+.|+||+|++.+|+.|++|||.++... . ..++++.++++.+++.+.+ ++.+++.. ..||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTNA--LSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCCc--ccCCHHHHHH
Confidence 6789999999999999999999999986211 1 1234566777777765433 23445432 4799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997644
No 125
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.7e-38 Score=316.80 Aligned_cols=171 Identities=28% Similarity=0.457 Sum_probs=146.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.|
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCccccccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 006650 529 GFVGQEPQLLQMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g~---~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALl 603 (637)
+||+|++.+|+.|++||+.++. .....++++.++++..++.+ +.... ..||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998641 11112334555555555532 12222 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|+++||||||++||+.+.+.+.+.+.+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987644
No 126
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-38 Score=326.57 Aligned_cols=172 Identities=32% Similarity=0.441 Sum_probs=152.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999974 3699999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC---------CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP---------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~---------~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+||+|++.+|. .|+.||+.++.. +...++++.++++..++.+++++.| ..||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 99999987765 499999997621 0122456788888888887766654 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+.+|++|||||||++||+++.+.+.+.+.+
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998644
No 127
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.7e-38 Score=312.28 Aligned_cols=170 Identities=24% Similarity=0.325 Sum_probs=148.5
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999974 35999999999999999999999999999999999999999999999999998765 46788999
Q ss_pred EEccCCcccc-ccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ 607 (637)
|++|++.+|. .|++||+.++... ...++++.++++..+++++.++.| ..||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999986 7999999875221 112446888899989887764422 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++||||||++||.++.+.+.+.+.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRA 172 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 128
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-38 Score=322.96 Aligned_cols=172 Identities=33% Similarity=0.478 Sum_probs=144.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 5789999999752 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHH--HHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHE--FILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~--fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +..+. -..||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~---------~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRY---------PHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcC---------hhhCCHHHHHHHHHHHH
Confidence 9999999995 799999987521 1111 233444555554432 22211 14799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++++|++|||||||++||+++.+.+.+.+.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 180 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKR 180 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988654
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=330.04 Aligned_cols=174 Identities=30% Similarity=0.431 Sum_probs=144.4
Q ss_pred cEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CCHH
Q 006650 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----i~~~ 522 (637)
.|+++||+|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997532 1359999999999999999999999999999999999999999999999999863 3456
Q ss_pred HHhcceEEEccCC--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHH
Q 006650 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~de----~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
.+|+.||||+|++ ++|+.|++|||.++.. ...+.+ ++.++++..+++ +..++ . -..|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-------~--~~~LSgGq~q 152 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR-------S--PFELSGGQMR 152 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhC-------C--cccCCHHHHH
Confidence 7889999999997 7999999999998721 122333 345556666654 22221 1 1479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++|||||+.+|++|||||||++||+.+...+.+.+.
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~ 189 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY 189 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
No 130
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.5e-38 Score=338.19 Aligned_cols=170 Identities=29% Similarity=0.460 Sum_probs=148.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+..+. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3599999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.||. .|++|||+|+.. ...+ ++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARAL 149 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 799999998732 1112 346677777777777666544 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|+||||||+||+.+...+.+.+.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998644
No 131
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-38 Score=312.90 Aligned_cols=167 Identities=35% Similarity=0.511 Sum_probs=146.5
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCccccc-cHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|.+ |++||+.++.... .+++++.++++..++.++..+.| ..||||||||++||||++
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP---------GELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999999975 9999998763211 23457888999999988877765 379999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++...+.+.+.+
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998653
No 132
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=324.46 Aligned_cols=174 Identities=33% Similarity=0.534 Sum_probs=147.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~~ 521 (637)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999964 359999999999999999999999999999999999975 689999999999865 455
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
..+|+.|+||+|++.+|+.|++||+.++.. .. ..++++.++++.+++.+++.. ..+. ..||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678999999999999999999999987521 11 123567777888877655432 2222 48999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987643
No 133
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.1e-38 Score=316.07 Aligned_cols=176 Identities=35% Similarity=0.495 Sum_probs=139.4
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHh
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~---~~lR 525 (637)
|+++||+|+|+++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997531 1269999999999999999999999999999999999999999999999999988774 5788
Q ss_pred cceEEEccCC--ccc-cccHHHHHhcCCC---CCCCHHHHHHHHHHcCHHHHHHcCCCCcc-cccCC--CCCChHHHHHH
Q 006650 526 EKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQKQRI 596 (637)
Q Consensus 526 ~~I~~V~Qd~--~LF-~gTI~eNI~~g~~---~~~~de~v~~A~~~a~l~~fI~~lP~G~d-T~vge--~~LSGGQkQRI 596 (637)
+.++|++|++ .++ ..|++||+.++.. ....+++...++ ++.++.+ |++ ..... ..||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5899999976411 111122222111 1223332 222 22222 47999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998644
No 134
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=328.07 Aligned_cols=170 Identities=35% Similarity=0.476 Sum_probs=146.9
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----hc
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----RE 526 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l----R~ 526 (637)
.++||+++|.+ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688888853 358999999999999999999999999999999999999999999999999988776553 46
Q ss_pred ceEEEccCCccc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF-~gTI~eNI~~g~~-----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
+|+||+|++.+| +.|++||+.++.. ....++++.++++..++.+++++.| ..||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP---------DELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc---------ccCCHHHHHHHHHHH
Confidence 899999999999 4699999987521 1112356778888888888877766 379999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLR 205 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998654
No 135
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=321.02 Aligned_cols=171 Identities=30% Similarity=0.425 Sum_probs=142.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC------CCCHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT------DLDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~------~i~~~ 522 (637)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3889999999974 25999999999999999999999999999999999999999999999999873 23456
Q ss_pred HHhcceEEEccCCccccc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 523 WLREKIGFVGQEPQLLQM-DIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
.+|++|+|++|++.+|.+ |++|||.++.. ...+ .+++.++++..++.+++.+.| ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 788999999999999974 99999975310 0112 234455566666655554433 4899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++||||++++|++|||||||++||+++...+.+.+.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~ 185 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIR 185 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999753
No 136
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.9e-38 Score=318.58 Aligned_cols=172 Identities=27% Similarity=0.475 Sum_probs=140.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~~I 528 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+.+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 579999999974 359999999999999999999999999999999999999999999999999988876654 5789
Q ss_pred EEEccCCccccc-cHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk 604 (637)
+|++|++.+|.+ |++||+.++.. .....++..+ .+++.+..+ |++..... ..||||||||++|||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 99999987521 1122221111 122333333 34333333 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|++|||||||++||+++.+.+.+.+.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~ 177 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIK 177 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999764
No 137
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-38 Score=325.41 Aligned_cols=174 Identities=34% Similarity=0.512 Sum_probs=151.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999753334699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+||+|++ .+++.|+.|||.++.. ...++ +++.++++.+++.++..+.| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4778999999987621 12233 34567888888877765533 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|+++|++|||||||++||+++...+.+.+.
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIH 184 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999998764
No 138
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-38 Score=323.00 Aligned_cols=171 Identities=25% Similarity=0.417 Sum_probs=150.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCccccc-cHHHHHhcCCC---------CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCP---------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~---------~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
||+|++.+|.+ |+.||+.++.. +...++++.++++..++.++.++.| ..||||||||++||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 150 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFLA 150 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHHH
Confidence 99999999976 99999988621 0112346777888888876655432 57999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++++|++|||||||++||+++...+.+.+.+
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998643
No 139
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-38 Score=327.27 Aligned_cols=172 Identities=29% Similarity=0.471 Sum_probs=146.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~i~~~~lR~ 526 (637)
-|+++||+|+|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999632 36999999999999999999999999999999999999999999999999984 345677899
Q ss_pred ceEEEccCC--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 527 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 527 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
.|+||+|++ .+|+.|++|||.++.. ...+ ++++.++++..+++++.++. -..||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKP---------THCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCC---------cccCCHHHHHHHHHH
Confidence 999999998 6889999999987521 1122 24566677777776654332 148999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||+.+|++|||||||++||+++...+.+.+.
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 140
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-38 Score=314.59 Aligned_cols=167 Identities=25% Similarity=0.465 Sum_probs=140.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 579999999964 369999999999999999999999999999999999999999999999988753 5688999
Q ss_pred EEccCCccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
|++|++.+|.+ |++||+.++.. ... .++++.++++..++.+...+.+ .+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV---------EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999987521 111 1234555566666554443311 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|+++||||||++||+++.+.+.+.+.+
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999997643
No 141
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=322.49 Aligned_cols=176 Identities=37% Similarity=0.578 Sum_probs=148.3
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--C
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 519 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i 519 (637)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999974 269999999999999999999999999999999999996 589999999999853 4
Q ss_pred CHHHHhcceEEEccCCccccccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChH
Q 006650 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 591 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGG 591 (637)
+...+|++|+||+|++.+|+.|++||+.++.. ...+ ++++.++++.+++.+.+.. .++. ..||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHH
Confidence 56788999999999999999999999987621 0122 2456677777776443321 2222 489999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 201 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987644
No 142
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.4e-38 Score=313.11 Aligned_cols=169 Identities=36% Similarity=0.496 Sum_probs=143.2
Q ss_pred EEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHHhcc
Q 006650 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK 527 (637)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~----~~lR~~ 527 (637)
++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++. +..|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999974 369999999999999999999999999999999999999999999999999765542 246788
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
++||+|++.+|. .|++||+.++.. ....++++.++++..++.++.++.+ ..||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999997 799999987521 0112456677777777766544322 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++|||||||++||+++...+.+.+.+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLE 179 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998643
No 143
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=4.4e-38 Score=340.24 Aligned_cols=171 Identities=25% Similarity=0.423 Sum_probs=153.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcc-ccccHHHHHhcCCCC---------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 529 GFVGQEPQL-LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 529 ~~V~Qd~~L-F~gTI~eNI~~g~~~---------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
|||+|++.+ |+.|++||+.+++.+ ..+++++.++++..++.++.++.+ ..||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 999999998 789999999987421 123456888999999987765432 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||+++|++|||||||++||+.+...+.+.+.
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~ 183 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVR 183 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998754
No 144
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-38 Score=325.22 Aligned_cols=171 Identities=28% Similarity=0.472 Sum_probs=150.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999743 35999999999999999999999999999999999999999999999999998878888999999
Q ss_pred EEccCC--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 530 FVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 530 ~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
||+|++ .+|+.|++||+.++.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999998 4889999999987521 1223 235677888888887776654 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+.+|++|||||||++||+++.+.+.+.+.
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~ 181 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLN 181 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 145
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6e-38 Score=321.32 Aligned_cols=171 Identities=32% Similarity=0.439 Sum_probs=146.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---------
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------- 520 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~--------- 520 (637)
|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 36999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcceEEEccCCcccc-ccHHHHHhcCCC--CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCC
Q 006650 521 ----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 589 (637)
Q Consensus 521 ----~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LS 589 (637)
...+|+.++||+|++.+|. .|+.||+.++.. ... .++++.++++..++.++..+.| ..||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 2467899999999999985 899999987511 011 2345666777777766655543 4799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654
No 146
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.7e-38 Score=302.53 Aligned_cols=141 Identities=40% Similarity=0.699 Sum_probs=133.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++++|++. +.++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5799999999753 246999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~IL 609 (637)
||+|++.+|++|++||+ ||||||||++|||||+++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Q 006650 610 LLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++||+.+.+.+.+.+.+
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHH
Confidence 99999999999999999997643
No 147
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.6e-38 Score=313.75 Aligned_cols=174 Identities=30% Similarity=0.428 Sum_probs=149.1
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHh
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~lR 525 (637)
|+++||+++|++.. +..+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|++||+++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997421 14699999999999999999999999999999999999999999999999999877753 468
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+.|+|++|++.+|. .|+.||+.++.. +..+. +++.++++..++.+++++.| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 89999999999998 699999987631 11222 34666777777776666655 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQK 186 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988644
No 148
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.8e-38 Score=310.48 Aligned_cols=170 Identities=22% Similarity=0.332 Sum_probs=148.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 789999999974 35999999999999999999999999999999999999999999999999987654 46788999
Q ss_pred EEccCCcccc-ccHHHHHhcCCCC--CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~~--~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
|++|++.++. .|++||+.++.+. ..+++++.++++..++.++.++.+ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999999886 6999999876321 134567888999999877654422 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++||||||++||+++...+.+.+.+
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 149
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=324.55 Aligned_cols=177 Identities=34% Similarity=0.436 Sum_probs=148.8
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--C
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 519 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i 519 (637)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||+++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999974 3699999999999999999999999999999999999985 89999999999875 4
Q ss_pred CHHHHhcceEEEccCCccccccHHHHHhcCCC-CC------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHH
Q 006650 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQ 592 (637)
+...+|+.|+||+|++.+|++|++||+.++.. .. ..++++.++++..++.+++... ++.. -..|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR---LHEP--GTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH---hhCC--cccCCHHH
Confidence 56678999999999999999999999987521 01 1134567788888876544311 1111 14799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||++|||||+.+|++|||||||++||+.+...+.+.+.
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 207 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999864
No 150
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.1e-38 Score=336.54 Aligned_cols=159 Identities=40% Similarity=0.491 Sum_probs=143.2
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----hcceEEEccCCcccc-
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ- 539 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l----R~~I~~V~Qd~~LF~- 539 (637)
..+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.|+.+.+...+ |+.|+||+|++.||+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 369999999999999999999999999999999999999999999999999999999888 889999999999997
Q ss_pred ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 006650 540 MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (637)
Q Consensus 540 gTI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEa 614 (637)
.|++|||.++.. ... .++++.++++.++++++.++.| ..||||||||++|||||+++|+|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p---------~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP---------DELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 599999998721 011 2456788899999988877766 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 006650 615 TSALDSESEHYVKANTLD 632 (637)
Q Consensus 615 TSaLD~~tE~~I~~~il~ 632 (637)
||+||+.+.+.+++.+.+
T Consensus 157 ~saLD~~~r~~l~~~l~~ 174 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKK 174 (363)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999999999999998753
No 151
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.6e-38 Score=336.86 Aligned_cols=170 Identities=31% Similarity=0.479 Sum_probs=150.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+...+ ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.||. .|++|||+|+.. ...+ ++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 599999998731 1122 346788899999988888777 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|+||||||+||+.+...+.+.|.+
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 189 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKA 189 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988643
No 152
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.3e-38 Score=318.79 Aligned_cols=171 Identities=36% Similarity=0.542 Sum_probs=144.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC--CHHHHhcc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLREK 527 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i--~~~~lR~~ 527 (637)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999974 3599999999999999999999999999999999999999999999999999764 34678889
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
++|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+..++.| ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 999999999986 699999987621 1122 234455566666555544332 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++++|++|||||||++||+++...+.+.+.+
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999997543
No 153
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-38 Score=328.44 Aligned_cols=174 Identities=28% Similarity=0.391 Sum_probs=144.2
Q ss_pred cEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--------
Q 006650 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 518 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-------- 518 (637)
.|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997532 1259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhcceEEEccCC--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHH-HHHHc
Q 006650 519 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVH-EFILS 574 (637)
Q Consensus 519 ----------------i~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~-~fI~~ 574 (637)
.+...+|+.||||+|+| .+|..|++|||.++.. ...+. +++.++++..++. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13467899999999986 7899999999998721 12233 3456666666663 34333
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 575 lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
-| ..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+.
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~ 209 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 22 4799999999999999999999999999999999999999998763
No 154
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.1e-38 Score=334.74 Aligned_cols=170 Identities=31% Similarity=0.488 Sum_probs=148.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||+++.+.+. .|+.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3899999999974 359999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCCC-----CCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.++.| ..||||||||+||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 99999999996 6999999987310 112 346777888888877766554 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++||||||||+||+.+...+.+.+.+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987643
No 155
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.7e-38 Score=317.41 Aligned_cols=172 Identities=34% Similarity=0.563 Sum_probs=139.9
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999974 36999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEccCCcc-ccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 530 FVGQEPQL-LQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 530 ~V~Qd~~L-F~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
|++|++.+ +..|++||+.++.. ...+.++..+ .+.++++.+ |++..... ..||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988 57899999987521 1222222111 122333332 33333333 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||||++||+++...+.+.+.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999997643
No 156
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-38 Score=336.85 Aligned_cols=170 Identities=29% Similarity=0.469 Sum_probs=147.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999974 359999999999999999999999999999999999999999999999999987765 35789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
+||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.++.++.| ..||||||||++|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998621 1122 245777888888877666554 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++||||||||+||+++.+.+.+.+.+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999987643
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-38 Score=325.33 Aligned_cols=174 Identities=32% Similarity=0.448 Sum_probs=142.6
Q ss_pred EEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHHH
Q 006650 450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW 523 (637)
Q Consensus 450 I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i----~~~~ 523 (637)
|+++||+|+|+++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 88999999997532 13699999999999999999999999999999999999999999999999998764 4567
Q ss_pred HhcceEEEccCC--ccccccHHHHHhcCCC-CCCCHHHH----HHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHHHH
Q 006650 524 LREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 524 lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~de~v----~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
+|+.|+||+|++ .+|+.|++|||.++.. ...+.++. .++++..++.+ +..+ . -..||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~--~~~LSgG~~qr 153 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK-------N--PFELSGGQMRR 153 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-------C--cccCCHHHHHH
Confidence 899999999998 6899999999987621 12333333 33444444431 1111 1 14799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK 190 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998643
No 158
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-37 Score=315.11 Aligned_cols=170 Identities=26% Similarity=0.386 Sum_probs=140.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~I 528 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 579999999974 36999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEccCCccccc-cHHHHHhcCCCC-CCCHH-HHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCPK-DVKNE-DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~~-~~~de-~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALl 603 (637)
+|++|++.+|.. |++||+.++... ..+++ ...++++..+ +++..... ..||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999876321 11112 2233333332 12222222 379999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|+++||||||++||+.+.+.+.+.+.+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998654
No 159
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=322.86 Aligned_cols=171 Identities=29% Similarity=0.509 Sum_probs=147.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~-~~~lR~~I 528 (637)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999642 35999999999999999999999999999999999999999999999999998776 46788999
Q ss_pred EEEccCCc--cccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+||+|++. +++.|+.|||.++... ..+ ++++.++++..++.++++..| ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 6789999999886211 122 345666777777776655533 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|+++|++|||||||++||+.+...+.+.+.
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999853
No 160
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.1e-38 Score=323.46 Aligned_cols=172 Identities=23% Similarity=0.361 Sum_probs=144.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHh
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~lR 525 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999877653 457
Q ss_pred cceEEEccCCccccc-cHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~--~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+.|+||+|++.+|.+ |++||+.++... ..+. +++.++++..++.+..+..| ..||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP---------SELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 889999999999986 999999874111 1122 24445566665554433322 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998643
No 161
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=318.66 Aligned_cols=171 Identities=30% Similarity=0.412 Sum_probs=149.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 35999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEccCCcc-ccccHHHHHhcCCCCC-C----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQL-LQMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~L-F~gTI~eNI~~g~~~~-~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
|++|++.+ +..|++||+.++.... . .++++.++++..++.++.++.+ ..||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999988 7789999998862211 1 2345677777777766554432 589999999999999999
Q ss_pred ------CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 ------RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 ------k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++...+.+.+.+
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 69999999999999999999999988654
No 162
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-37 Score=316.92 Aligned_cols=169 Identities=26% Similarity=0.420 Sum_probs=141.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~I 528 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 36999999999999999999999999999999999999999999999999998887664 45679
Q ss_pred EEEccCCccccc-cHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHH
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~~~-------------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQ 592 (637)
+|++|++.+|.+ |++||+.++.... ..++++.++++..++.+ .... +.|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 999999999986 9999998863211 01223444444444333 2222 4799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||++||||++++|++|||||||++||+++...+.+.+.+
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997643
No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=322.41 Aligned_cols=171 Identities=30% Similarity=0.418 Sum_probs=144.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhcc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLREK 527 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~i~~~~lR~~ 527 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999974 35999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEccCCc--cccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 528 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 528 I~~V~Qd~~--LF~gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
|+||+|++. +|..|+.||+.++.. ...+. +++.++++..++.++.++. -..||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP---------IQCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC---------chhCCHHHHHHHHHHH
Confidence 999999986 678899999987411 11222 3455677777776654321 1479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++|||||||++||+++...+.+.+.+
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 181 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987643
No 164
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-38 Score=320.30 Aligned_cols=176 Identities=32% Similarity=0.524 Sum_probs=148.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCCHHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i~~~~ 523 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999974 2599999999999999999999999999999999999984 6999999999999888889
Q ss_pred HhcceEEEccCCccc-cccHHHHHhcCCCC-C------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 524 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 524 lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~-~------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
+|+.|+||+|++.+| +.|++||+.++... . ..++++.++++..++.+.+.. .+++.+ ..||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAPA--GKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCCc--ccCCHHHHHH
Confidence 999999999999755 68999999876211 1 113456777777776544321 123222 4799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998644
No 165
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=311.29 Aligned_cols=389 Identities=18% Similarity=0.226 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 232 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-LSIIVSVYGQYQKRASVLTQECNAHAN 310 (637)
Q Consensus 232 srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~~ 310 (637)
+|++.|+++..+.+......++..++.++....-++....++..+.+..-.+ -.++.+.+++..-+...+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 6999999998876665555555544444433333444443444444443332 333445454444455555555666666
Q ss_pred HHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----hCCc
Q 006650 311 NVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS-FITLYRSTQVMAVLLGGMSIM----IGQV 385 (637)
Q Consensus 311 ~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~l~~g~~lv~----~g~i 385 (637)
-.-.+...+.+.|-.|+.++.|..+..+..++..+...+.- ...++... .+++.+.+.++..++.+.-+. .+.+
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~-~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~ 344 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELM-SFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDL 344 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCc
Confidence 66777888999999999999998888887777766554432 22233222 233323333322222222222 3567
Q ss_pred CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------------CCC-C-------Cccc
Q 006650 386 SPEQLTKYVLYCEWL----IYATWRMVDNLSSLLQSIGATEKVFQLIDLLP-------------SNQ-F-------LSEG 440 (637)
Q Consensus 386 t~G~l~a~~~~~~~l----~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~-------------~~~-~-------~~~~ 440 (637)
+..++...+.....+ +.+...+.....++.+-.+-..|+-|+++.-. +++ + +++.
T Consensus 345 s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~ 424 (659)
T KOG0060|consen 345 SPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGS 424 (659)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCC
Confidence 888777655433322 23333333333344444456677777764311 000 0 0000
Q ss_pred cccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 006650 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (637)
Q Consensus 441 ~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~ 520 (637)
....+.+..|+|++|++.=|++ ..-+.+|+||+|+.|+.+-|.||||||||+|++.|.|+++..+|.+.--.....
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--- 500 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--- 500 (659)
T ss_pred cccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC---
Confidence 1111224679999999999975 334668899999999999999999999999999999999999999976332211
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCC------CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC---CCCChH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGG 591 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~------~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge---~~LSGG 591 (637)
+.+=||||.|+.=.||+||-+-|-. ...++||++.+.++.+++.+.++. -+|+|+.+.- .-||+|
T Consensus 501 -----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~G 574 (659)
T KOG0060|consen 501 -----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPG 574 (659)
T ss_pred -----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHH
Confidence 4589999999999999999998851 134799999999999999888776 5899998874 489999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|+||+|.||-+|.+|++-||||+|||+|.+.|.++-+.+-
T Consensus 575 EqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r 614 (659)
T KOG0060|consen 575 EQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR 614 (659)
T ss_pred HHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877543
No 166
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=322.19 Aligned_cols=175 Identities=34% Similarity=0.536 Sum_probs=153.5
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCCCCHHHH
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~di~~i~~~~l 524 (637)
..|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999753 2369999999999999999999999999999999999999998 899999999988888888
Q ss_pred hcceEEEccCC--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 525 REKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 525 R~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
|++||||+|++ .+++.|+.|||.++.. ...+. +++.++++..++.++.++.| ..||||||||++
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~ 153 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVA 153 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHH
Confidence 99999999998 4778999999988621 12333 44777888888888777665 589999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||+.+|++|||||||++||+.+...+.+.+.+
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997643
No 167
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-38 Score=320.55 Aligned_cols=176 Identities=32% Similarity=0.479 Sum_probs=146.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCC--CCCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLT--DLDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~--~i~~ 521 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 25999999999999999999999999999999999999974 999999999997 4566
Q ss_pred HHHhcceEEEccCCccccc-cHHHHHhcCCC-CC------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQM-DIKSNIMYGCP-KD------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQk 593 (637)
..+|++|+||+|++.+|.. |++||+.++.. .. ..++++.++++..++.+++... ++.. -..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR---LNDY--PSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh---hccC--hhhCCHHHH
Confidence 6789999999999999975 99999987521 11 1124566677777665443221 1111 148999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+++...+.+.|.+
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998754
No 168
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=9.8e-38 Score=303.16 Aligned_cols=143 Identities=36% Similarity=0.648 Sum_probs=132.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+|+++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.++ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999754 23699999999999999999999999999999999999999999999999998776 677899999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~IL 609 (637)
||+|++.+|+.|++||| -..||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Q 006650 610 LLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++||+++...+.+.+.+
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999988643
No 169
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=323.50 Aligned_cols=174 Identities=32% Similarity=0.516 Sum_probs=151.2
Q ss_pred cEEEEEEEEECCCCC---CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHH
Q 006650 449 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~---~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~-~~~l 524 (637)
-|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 236999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcceEEEccCC--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 525 REKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 525 R~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
|+.||||+|++ .+|..|+.||+.++.. ...+ ++++.++++..++.++.++.| ..||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 89999999998 4788899999998621 0122 456778888889988877765 579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||||+++|++|||||||++||+.+...+.+.+.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 188 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIK 188 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 170
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=335.35 Aligned_cols=173 Identities=30% Similarity=0.494 Sum_probs=149.7
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
...|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+... .|+
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQR 91 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHC
Confidence 345999999999964 359999999999999999999999999999999999999999999999999987664 578
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
.||||+|++.||. .|++|||+|+.. ...+ .+++.++++..++.++.++.| ..||||||||+||||
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~---------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQLSGGQRQRVALAR 162 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999996 599999998732 1122 345667777778776666554 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
||+++|++|+||||||+||+.+...+.+.+.+.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 195 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876544
No 171
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.1e-37 Score=309.35 Aligned_cols=167 Identities=33% Similarity=0.492 Sum_probs=146.5
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++++||+++|+. .++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999987654 4688899
Q ss_pred EEccCCcccc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|. .|++||+.++..+. .+++++.++++..++.+..++.| ..||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------EQLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999999997 49999998641111 23457788899999988877766 379999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|+++||||||++||.++...+.+.+.+
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999997643
No 172
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.3e-37 Score=318.24 Aligned_cols=170 Identities=34% Similarity=0.440 Sum_probs=139.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--------H
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------I 521 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~--------~ 521 (637)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+ .
T Consensus 4 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHGQ---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 8999999999742 5999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEccCCcccc-ccHHHHHhcCCC--CCCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
..+|+.++||+|++.+|. .|++||+.++.. .....+ ++.++++..++.+..++ . -..|||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~--~~~LS~Gq~q 151 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS-------Y--PRRLSGGQQQ 151 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhC-------C--hhhCChHHHH
Confidence 567889999999999995 799999987411 112222 23334444443322211 1 1489999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 188 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999754
No 173
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=320.90 Aligned_cols=174 Identities=33% Similarity=0.493 Sum_probs=149.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23599999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCc--cccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+||+|++. ++..|+++|+.++... ... ++++.++++..++.++.++.| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP---------NALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 5667899999886211 112 245666777777766544322 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++.+|++|||||||++||+.+.+.+.+.+.+
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999997644
No 174
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=323.68 Aligned_cols=176 Identities=32% Similarity=0.466 Sum_probs=142.2
Q ss_pred CCcEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----C-
Q 006650 447 MGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L- 519 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----i- 519 (637)
.+.|+++||+++|+++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+ .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997532 1259999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcceEEEccCC--ccccccHHHHHhcCCC-CCCCHHHH----HHHHHHcCHHHHHHcCCCCcccccCC--CCCCh
Q 006650 520 DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~de~v----~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSG 590 (637)
+...+|+.|+||+|++ .+|..|++|||.++.. ...+.++. .++++..++ |+++ ... ..|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCH
Confidence 4567889999999998 5788999999998621 12233332 223333332 2221 122 47999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++|||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 195 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987643
No 175
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-37 Score=319.12 Aligned_cols=174 Identities=32% Similarity=0.462 Sum_probs=146.5
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~ 520 (637)
..|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999974 359999999999999999999999999999999999998 699999999999863 56
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCCC-CC---CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~---~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQ 594 (637)
...+|+.|+||+|++.+|..|++||+.++... .. .++++.++++.+++.+.+. +.... ..|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 77889999999999999999999999986321 11 1345566677666543322 22222 479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 198 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMH 198 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
No 176
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=317.89 Aligned_cols=177 Identities=34% Similarity=0.520 Sum_probs=146.9
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i~ 520 (637)
+.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 469999999999742 599999999999999999999999999999999999863 69999999999875 45
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
...+|+.|+||+|++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+... .+.. -..|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~G~~q 153 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR---LKKS--ALGLSGGQQQ 153 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH---HhcC--CCCCCHHHHH
Confidence 6678999999999999999999999998621 11 1234566677777765444311 1111 1479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+.+|++|||||||++||+++...+.+.+.+
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987643
No 177
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=317.28 Aligned_cols=176 Identities=21% Similarity=0.377 Sum_probs=141.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~~ 527 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988876554 456
Q ss_pred eEEEccCCccccc-cHHHHHhcCCCCC--------------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCCh
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCPKD--------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~~~--------------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSG 590 (637)
++||+|++.+|.+ |++|||.++.... ..+++ .+ ....+.++++.+ |++..... ..|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999985 9999999862100 00000 00 001123333333 34333333 48999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++|||||+.+|++|||||||++||+++...+.+.+.+
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987643
No 178
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=315.10 Aligned_cols=175 Identities=25% Similarity=0.391 Sum_probs=141.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~ 527 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~ 605 (637)
++||+|++.+|.+ |++||+.++.. ..+.++..+.+ ++.+..++...++.-.. ..||||||||++|||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 99999998631 12222222211 12222221111221112 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||||++||+++.+.+.+.+.+
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998643
No 179
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.3e-37 Score=333.38 Aligned_cols=171 Identities=30% Similarity=0.471 Sum_probs=150.2
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC--ceEEECCEeCCCCCHHHH
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~--G~I~idG~di~~i~~~~l 524 (637)
.++|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 467999999999974 359999999999999999999999999999999999999999 999999999987665 4
Q ss_pred hcceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
++.|+||+|++.||. .|++|||+|+.. ...+ ++++.++++..+++++.++.| ..||||||||+||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvaL 148 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP---------AQLSGGMQQRIAI 148 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh---------hhCCHHHHHHHHH
Confidence 678999999999995 599999998621 1122 345777888888887777666 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||+++|++|+||||||+||+.+...+.+.+.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~ 181 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 180
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.5e-37 Score=305.00 Aligned_cols=159 Identities=31% Similarity=0.459 Sum_probs=135.9
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhcceEEEccCC--ccccc
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQM 540 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~--~LF~g 540 (637)
..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .....+|+.++||+|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 369999999999999999999999999999999999999999999999999852 23456788999999998 58899
Q ss_pred cHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 006650 541 DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615 (637)
Q Consensus 541 TI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaT 615 (637)
|++||+.++.. ...+ ++++.++++..++.++.++.| ..||||||||++|||||+++|+++||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987521 1122 235667777778776665543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 006650 616 SALDSESEHYVKANTLD 632 (637)
Q Consensus 616 SaLD~~tE~~I~~~il~ 632 (637)
++||+++.+.+.+.+.+
T Consensus 156 ~~LD~~~~~~~~~~l~~ 172 (190)
T TIGR01166 156 AGLDPAGREQMLAILRR 172 (190)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999998644
No 181
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=320.56 Aligned_cols=177 Identities=32% Similarity=0.450 Sum_probs=148.8
Q ss_pred CCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--
Q 006650 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD-- 518 (637)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~-- 518 (637)
....|+++||+|+|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||+++.+
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3446999999999964 369999999999999999999999999999999999997 589999999999864
Q ss_pred CCHHHHhcceEEEccCCccccccHHHHHhcCCCC-CC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCCh
Q 006650 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSG 590 (637)
.+...+|+.|+||+|++.+|.+|++|||.++... .. .++++.++++..++.+++.. .++. ..|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCH
Confidence 3456789999999999999999999999886211 11 23456667777777655432 2233 48999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 208 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997644
No 182
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=319.59 Aligned_cols=173 Identities=24% Similarity=0.371 Sum_probs=151.9
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|+++||+++|++ ..+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+++..++...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 359999999999999999999999999999999999999999999999999998888888899
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCCC---------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~~---------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
|+||+|++.+|. .|++||+.++..+ ...++++.++++..++.++.++.| ..||||||||++
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~ 153 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAW 153 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHH
Confidence 999999999885 7999999875211 112346777888888877655432 579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++++|++|||||||++||+++...+.+.+.+
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998643
No 183
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.4e-37 Score=317.62 Aligned_cols=170 Identities=25% Similarity=0.382 Sum_probs=147.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+++...+|+.|+
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEccCCc-cccccHHHHHhcCCCC---------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 530 FVGQEPQ-LLQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 530 ~V~Qd~~-LF~gTI~eNI~~g~~~---------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
|++|++. .+..|++||+.++... ...++++.++++..++.+..++.+ ..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---------STLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHH
Confidence 9999986 5578999999886211 012235666777777765544322 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||++.+|+++||||||++||+++...+.+.+.
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999764
No 184
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-37 Score=306.99 Aligned_cols=168 Identities=24% Similarity=0.366 Sum_probs=145.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|+++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .. +|+.++
T Consensus 3 l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECCe---EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 7899999999742 59999999999999999999999999999999999999999999999998753 22 888999
Q ss_pred EEccCCccc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ 607 (637)
|++|++.++ +.|++||+.+... ....++++.++++..++.++.+.-+ ..||||||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF---------GYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999988775 6899999987521 1234567888889888876543321 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||||++||+++...+.+.+.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999987644
No 185
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.6e-38 Score=289.70 Aligned_cols=162 Identities=30% Similarity=0.468 Sum_probs=142.4
Q ss_pred CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHH
Q 006650 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 464 ~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
+.++|+|+||++.+||.+||.||||||||||+|.++-+..|++|.+++.|.|++.++++.+|++|+|+.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC---CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 006650 544 SNIMYG---CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (637)
Q Consensus 544 eNI~~g---~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaL 618 (637)
||+-|- +....+.+...+-++.+++.+.+- .. .+|||||||||||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L----------~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSIL----------TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhh----------cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999874 122334455555555555554443 23 389999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 006650 619 DSESEHYVKANTLDSLL 635 (637)
Q Consensus 619 D~~tE~~I~~~il~~l~ 635 (637)
|..+.+.|.+.|+..+.
T Consensus 165 D~~nkr~ie~mi~~~v~ 181 (223)
T COG4619 165 DESNKRNIEEMIHRYVR 181 (223)
T ss_pred ChhhHHHHHHHHHHHhh
Confidence 99999999999988763
No 186
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-37 Score=307.06 Aligned_cols=156 Identities=25% Similarity=0.421 Sum_probs=135.6
Q ss_pred cEEEEEEEEECCCC-CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHH
Q 006650 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~i~~~~l 524 (637)
.+.++||+|.|+.+ .+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+++ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999854 34579999999999999999999999999999999999999 89999999999998775 467
Q ss_pred hcceEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
|+.++|++|++.+|. .|++|||.++.. .. .+..+ ..||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~-----------------------~~~~~--~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--CK-----------------------GNEFV--RGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--hc-----------------------cccch--hhCCHHHHHHHHHHHHHh
Confidence 889999999998887 599999987621 10 11111 379999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++++.+.+.+.+
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~ 163 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRT 163 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999997643
No 187
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=317.04 Aligned_cols=176 Identities=32% Similarity=0.497 Sum_probs=144.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~~ 521 (637)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 369999999999999999999999999999999999997 489999999999854 445
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CCC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
..+|+.++||+|++.+|+.|++||+.++.. ... .++++.++++..++++.. +++++.. -..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~--~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDRN--AQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhccC--hhhCCHHHHHH
Confidence 678899999999999999999999987621 011 123455566666653211 1111211 14899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|+++||||||++||+++...+.+.+.+
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887644
No 188
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=316.83 Aligned_cols=166 Identities=31% Similarity=0.450 Sum_probs=140.9
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999974 3699999999999999999999999999999999999999999999999998653 34699
Q ss_pred EEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| ..||||||||++|||||+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999997 699999987521 1112 234666677777665544322 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++...+.+.+.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLK 173 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998643
No 189
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-37 Score=310.25 Aligned_cols=167 Identities=34% Similarity=0.509 Sum_probs=146.9
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++. + .|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999632 2 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCccccc-cHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|.+ |++|||.++..+. ..++++.++++..++.+++++.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999999985 9999998752111 23457888999999988888766 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|+++||||||++||+++.+.+.+.+.+
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999997644
No 190
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-37 Score=299.86 Aligned_cols=142 Identities=48% Similarity=0.686 Sum_probs=132.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--HHHHhcc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 527 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~--~~~lR~~ 527 (637)
|+++|++|+|++ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 579999999974 36999999999999999999999999999999999999999999999999998876 6778899
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
++|++|++.+|. .|++||+.+. ||||||||++|||||+++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999986 5999998653 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++||||||++||+.+...+.+.+.+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKS 145 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998654
No 191
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-37 Score=298.33 Aligned_cols=139 Identities=35% Similarity=0.628 Sum_probs=129.9
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++++||+++|++. ++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||+++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 4799999999743 5999999999999999999999999999999999999999999999999998766 67789999
Q ss_pred EEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~I 608 (637)
||+|++.+|.+ |++||+. ||||||||++|||||+++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 99999999986 9999984 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+||||||++||+.+...+.+.+.+
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999998643
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=319.43 Aligned_cols=176 Identities=33% Similarity=0.501 Sum_probs=148.5
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--C
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 519 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i 519 (637)
.+.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999964 2599999999999999999999999999999999999984 89999999999864 4
Q ss_pred CHHHHhcceEEEccCCccccccHHHHHhcCCC-CCC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChH
Q 006650 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 591 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGG 591 (637)
+...+|+.++|++|++.+|++|++||+.++.. ... .++++.++++.+++.+.+.. ..+. ..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 55678999999999999999999999987521 111 12456777777777654432 2232 489999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++|||||+++|+++||||||++||+.+...+.+.+.+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 213 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITE 213 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988644
No 193
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=321.47 Aligned_cols=176 Identities=30% Similarity=0.446 Sum_probs=142.8
Q ss_pred cEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHH
Q 006650 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i----~~~ 522 (637)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 488999999997421 13699999999999999999999999999999999999999999999999998653 346
Q ss_pred HHhcceEEEccCC--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHH
Q 006650 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~de----~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
..|+.|+||+|++ .+|+.|++|||.++.. ...+.+ .+.++++..++. ++.+.. -..|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS---------PFELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC---------cccCCHHHHH
Confidence 7788999999998 6888999999987521 122222 334444554443 232221 1489999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|++|||||+.+|++|||||||++||+++...+.+.+ +++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l-~~l 191 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF-KDY 191 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999998875 444
No 194
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=313.82 Aligned_cols=175 Identities=27% Similarity=0.458 Sum_probs=143.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~ 527 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999974 36999999999999999999999999999999999999999999999999998887644 5788
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAI 602 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARAL 602 (637)
|+||+|++.+|. .|++||+.++.. ...+.++. ...++++++.+ |++..... ..||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999998 599999987621 11222211 11233444444 34443333 48999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
+++|++|||||||++||+++...+.+.+ +.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~ 183 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRII-EHL 183 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHH-HHH
Confidence 9999999999999999999999998865 444
No 195
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.2e-37 Score=327.17 Aligned_cols=174 Identities=28% Similarity=0.395 Sum_probs=143.1
Q ss_pred cEEEEEEEEECCCCC----------CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 006650 449 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~----------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 518 (637)
-|+++||+++|+.+. ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999999
Q ss_pred CCHHH---HhcceEEEccCC--ccc-cccHHHHHhcCC---CCCCCHH----HHHHHHHHcCHH-HHHHcCCCCcccccC
Q 006650 519 LDIRW---LREKIGFVGQEP--QLL-QMDIKSNIMYGC---PKDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVD 584 (637)
Q Consensus 519 i~~~~---lR~~I~~V~Qd~--~LF-~gTI~eNI~~g~---~~~~~de----~v~~A~~~a~l~-~fI~~lP~G~dT~vg 584 (637)
++.++ +|++|+||+|++ .|| ..||.|||.++. ....+.+ .+.++++.+++. ++.++.|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 87654 678999999998 577 589999997531 0123333 344555555552 2222222
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 585 e~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
..||||||||++|||||+.+|++||+|||||+||..+...|.+.+.
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~ 205 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ 205 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999753
No 196
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=315.15 Aligned_cols=174 Identities=29% Similarity=0.472 Sum_probs=145.2
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~--i~ 520 (637)
..|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 35899999999974 35999999999999999999999999999999999999997 6999999999865 34
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQ 592 (637)
...+|+.++||+|++.+|+.|++|||.++.. ... . ++.+.++++..++.+++.. .... ..|||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq 152 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQ 152 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHH
Confidence 5678999999999999999999999998621 011 1 2344555666666544432 2222 4899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 191 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 197
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-37 Score=313.94 Aligned_cols=168 Identities=32% Similarity=0.468 Sum_probs=148.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+|++. ++++|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 5799999999742 69999999999999999999999999999999999999999999999999987664 368899
Q ss_pred EEccCCccccc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~-----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|.+ |++||+.++.. +...++++.++++..++++++++.| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999965 99999987521 1122456778888888888877665 589999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++|+++||||||++||+.+.+.+.+.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~ 174 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELK 174 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 198
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=316.83 Aligned_cols=176 Identities=32% Similarity=0.432 Sum_probs=145.1
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC--------
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------- 519 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i-------- 519 (637)
+.|+++||+|+|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999974 3599999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcceEEEccCCcccc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCC
Q 006650 520 -----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 587 (637)
Q Consensus 520 -----~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~ 587 (637)
....+|+.|+||+|++.+|. .|++||+.++.. .... ++++.++++..++.++... . .-..
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~------~--~~~~ 152 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG------K--YPVH 152 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhh------C--Cccc
Confidence 13577889999999999997 599999987410 0112 2345566666666554311 0 1147
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||||||||++|||||+++|++|||||||++||+++.+.+.+.+ .++.
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~l~ 199 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM-QQLA 199 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999875 4443
No 199
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.8e-37 Score=317.73 Aligned_cols=174 Identities=31% Similarity=0.421 Sum_probs=141.2
Q ss_pred EEEEEEEEECCCC------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH
Q 006650 450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 450 I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~ 523 (637)
|+++||+|+|++. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999642 1246999999999999999999999999999999999999999999999999998877643
Q ss_pred ---HhcceEEEccCCc--cc-cccHHHHHhcCCC------CCCCHHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCCh
Q 006650 524 ---LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSG 590 (637)
Q Consensus 524 ---lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~------~~~~de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSG 590 (637)
+|+.|+||+|++. ++ ..|++|||.++.. ++..++++.++++..++. +..+. . ...|||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~--~~~LSg 153 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK-------L--PRQLSG 153 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhC-------C--hhhCCH
Confidence 6788999999983 44 4799999965310 011233455555555553 22111 1 147999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++|||||+.+|++|||||||++||+++...+.+.+.+
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 195 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998644
No 200
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-37 Score=317.37 Aligned_cols=176 Identities=32% Similarity=0.478 Sum_probs=143.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~~ 521 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4999999999974 369999999999999999999999999999999999875 799999999999865 345
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
..+|+.|+||+|++.+|++|++||+.++.. .. ..++.+.++++..++.+.+... .+.. -..||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDR---LHSS--ALSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH---HhcC--cccCCHHHHHH
Confidence 578899999999999999999999987521 01 1123455666666653222110 1111 14899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 209 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE 209 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887644
No 201
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.6e-37 Score=323.89 Aligned_cols=171 Identities=30% Similarity=0.472 Sum_probs=141.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|++|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~de~----v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.+|. .|++||+.+... ...+.++ +.++++..++. +.+++.+ ..||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-------~~~~~~~--~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADVRV--ALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-------hHhcCch--hhCCHHHHHHHHHHHHH
Confidence 99999999985 799999975311 1233333 33344444443 3334433 36999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++|||||||++||+++...+.+.+.+
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999997643
No 202
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-37 Score=302.90 Aligned_cols=174 Identities=36% Similarity=0.455 Sum_probs=142.8
Q ss_pred cEEEEEEEEECCCCCC-cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhc
Q 006650 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~-~~~lR~ 526 (637)
-++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||+++|+|+.+|++|+|.+||.++..-. .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4889999999985421 14999999999999999999999999999999999999999999999998775533 447889
Q ss_pred ceEEEccCCccc---cccHHHHHh----cCCCCCCCHHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 527 KIGFVGQEPQLL---QMDIKSNIM----YGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 527 ~I~~V~Qd~~LF---~gTI~eNI~----~g~~~~~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
.|-+|+|||+-= ..||++=|. .. .-+-.++++.++++.+|+.+ |..+.| ..|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~~~~~i~~~L~~VgL~~~~l~R~P---------~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSKSQQRIAELLDQVGLPPSFLDRRP---------HELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccC-CccHHHHHHHHHHHHcCCCHHHHhcCc---------hhcChhHHHHHHH
Confidence 999999999732 244555442 21 11224566888999999865 445555 4699999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||.-+|++||||||||+||+-..++|.+.+.+
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~ 186 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLE 186 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987543
No 203
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=317.17 Aligned_cols=175 Identities=34% Similarity=0.473 Sum_probs=144.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~--i~~ 521 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4999999999974 259999999999999999999999999999999999997 3 69999999999864 455
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CC-CCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
..+|+.|+||+|++.+|++|++||+.++.. .. .++ +++.++++..++.+++... +++. -..||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~~--~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHTQ--ALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhCC--cccCCHHHHHH
Confidence 678899999999999999999999988621 11 122 3355566676765544321 1211 14799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 199 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 204
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.2e-37 Score=313.15 Aligned_cols=168 Identities=33% Similarity=0.487 Sum_probs=144.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++|+|+++ ++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 5799999999743 59999999999999999999999999999999999999999999999999987653 478899
Q ss_pred EEccCCccccc-cHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~~-~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|.+ |++||+.++... .. .++++.++++..++.++.++.+ ..|||||+||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 999999886321 11 1344566666666665554433 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++|+++||||||++||.+++..+.+.+.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~ 174 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLR 174 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999764
No 205
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=315.09 Aligned_cols=174 Identities=38% Similarity=0.529 Sum_probs=144.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCCC--CH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~i--~~ 521 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 359999999999999999999999999999999999954 6 599999999998643 45
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
..+|+.|+||+|++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+.. ..+. ..||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHH
Confidence 678899999999999999999999987521 01 123445566777766544331 2222 47999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||.++...+.+.+.+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987643
No 206
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-37 Score=314.26 Aligned_cols=177 Identities=31% Similarity=0.455 Sum_probs=146.3
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCCC--
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL-- 519 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~i-- 519 (637)
.+.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.+.
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 357999999999974 359999999999999999999999999999999999986 4 699999999998653
Q ss_pred CHHHHhcceEEEccCCcccc-ccHHHHHhcCCCC-C-CC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHH
Q 006650 520 DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-~-~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQ 592 (637)
+...+|+.|+||+|++.+|. .|++||+.++... . .+ ++++.++++..++.+++..+- ++ .-..|||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~ 153 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL---KS--NAMELSGGQ 153 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh---hC--CcCcCCHHH
Confidence 45578999999999999998 6999999875210 1 11 245666777777765543221 11 124799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~ 192 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999753
No 207
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=316.87 Aligned_cols=177 Identities=34% Similarity=0.476 Sum_probs=148.3
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i~ 520 (637)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999964 3599999999999999999999999999999999999986 48999999999854 45
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC-----CCCC-HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~-de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
...+|+.|+||+|++.+|+.|++||+.++.. ++.+ ++.+.++++.+++.+++... +++. -..|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LNKS--ALGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hcCC--cccCCHHHHH
Confidence 5678899999999999999999999987521 1111 24466778888876655432 1221 1479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS 195 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998644
No 208
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.6e-37 Score=311.57 Aligned_cols=176 Identities=28% Similarity=0.442 Sum_probs=137.9
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHHh
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~i~~~~lR 525 (637)
++|+||+|+|++.+ ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 2579999999999999999999999999999999999999 99999999999875 35788
Q ss_pred cceEEEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHcCCCCcccccCC---CCCChHHHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDD---DLLSGGQKQRIAIAR 600 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge---~~LSGGQkQRIaIAR 600 (637)
+.|+|++|++.+|++ |++||+.++...... +...++.+....++ .+..+ |+ +.+.+ ..||||||||++|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~l-~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKKRVEDVLLRDL--AL-TRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcc-cccchHHHHHHHHHHHHHhh--cc-hhhhcccccCcCHHHHHHHHHHH
Confidence 999999999999987 999999875210100 00000111111111 22221 22 22222 489999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++|||||||++||+.+.+.+.+.+.+
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999997643
No 209
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-37 Score=318.53 Aligned_cols=172 Identities=29% Similarity=0.478 Sum_probs=145.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhcc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 527 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--i~~~~lR~~ 527 (637)
|+++||+++|+++ .++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...+|+.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7899999999742 359999999999999999999999999999999999999999999999999852 334578899
Q ss_pred eEEEccCC--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 528 IGFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 528 I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
|+||+|++ .+|+.|+.|||.++.. ...+ .+++.++++..++.++.+..| ..||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP---------HHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 99999998 5889999999988621 1122 244666777777655433322 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++|||||||++||+++...+.+.+.+
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 182 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYD 182 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998643
No 210
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-37 Score=332.17 Aligned_cols=158 Identities=39% Similarity=0.547 Sum_probs=138.9
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----hcceEEEccCCcccc-c
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ-M 540 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l----R~~I~~V~Qd~~LF~-g 540 (637)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 468999999999996 6
Q ss_pred cHHHHHhcCCC-CC----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 006650 541 DIKSNIMYGCP-KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615 (637)
Q Consensus 541 TI~eNI~~g~~-~~----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaT 615 (637)
|++|||.++.. .. ..++++.++++..++.++.++.| ..||||||||++|||||+.+|++|||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999998621 01 12356777888888877777665 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 006650 616 SALDSESEHYVKANTLD 632 (637)
Q Consensus 616 SaLD~~tE~~I~~~il~ 632 (637)
|+||+.+.+.+++.+.+
T Consensus 193 s~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 193 SALDPLIRTEMQDELVK 209 (400)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999998754
No 211
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-37 Score=315.96 Aligned_cols=175 Identities=33% Similarity=0.443 Sum_probs=147.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCC--CCCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT--DLDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~--~i~~ 521 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++. +.+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4999999999964 269999999999999999999999999999999999986 48999999999985 3456
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCCC-C---CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~---~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
..+|++|+||+|++.+|+.|++|||.++... . ..++++.++++.+++.+++... ++.. ...||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK---LKQS--GLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH---hcCC--cccCCHHHHHHHH
Confidence 7789999999999999999999999986311 1 1234566677888876665422 1111 1379999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||||+++|++|||||||++||+++...+.+.+.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 195 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMH 195 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
No 212
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-37 Score=301.42 Aligned_cols=172 Identities=31% Similarity=0.455 Sum_probs=147.0
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HH
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 524 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~l 524 (637)
.-|++++|+|+|.++ .||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+++|+|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 369999999999754 599999999999999999999999999999999999999999999999999999864 66
Q ss_pred hcceEEEccCCccc-cccHHHHHhcCC--CCCCCHHHHHH----HHHHcCHHHH-HHcCCCCcccccCCCCCChHHHHHH
Q 006650 525 REKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKNEDIEW----AAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 525 R~~I~~V~Qd~~LF-~gTI~eNI~~g~--~~~~~de~v~~----A~~~a~l~~f-I~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
|+++|+++|+.-|| +-||+||++|-- ..+.+++++++ -++++|+..- -+.+| ..||||.+.|.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRv 154 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRV 154 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHH
Confidence 99999999999999 569999999841 12345555544 3455555544 33333 57999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||||.-||+|+++|||||+|||.+...+-+.|.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~ 189 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999988877653
No 213
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-37 Score=318.44 Aligned_cols=177 Identities=31% Similarity=0.473 Sum_probs=147.9
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~ 520 (637)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999964 369999999999999999999999999999999999997 689999999999864 35
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
...+|+.++||+|++.+|..|++||+.++.. +...++++.++++..++.+.+... ++.. -..||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~~--~~~LSgGe~qrv 189 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDSS--GLDLSGGQQQRL 189 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhCC--cccCCHHHHHHH
Confidence 5678999999999999999999999987521 111245677778877765443321 1111 148999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|++|||||||++||+++...+.+.|.+
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~ 225 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE 225 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987644
No 214
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-37 Score=314.30 Aligned_cols=173 Identities=31% Similarity=0.432 Sum_probs=144.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i--~~ 521 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999974 3599999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCCC-CC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
...|+.|+|++|++.+|++|++|||.++... .. .++++.++++.+++.+.+. +..+. ..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 6778899999999999999999999986211 11 1234555666655543332 22333 38999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||++||||++.+|+++||||||++||+++.+.+.+.+.
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~ 193 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE 193 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 215
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.6e-37 Score=322.53 Aligned_cols=172 Identities=26% Similarity=0.435 Sum_probs=143.4
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999964 35999999999999999999999999999999999999999999999999997754 457899
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~de~----v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
||||||++.+|. .|++||+.+... ...+.++ +.++++..++ ++..++.+ +.||||||||++||||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~--~~LS~G~~qrl~la~a 152 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKV--GELSGGMKRRLTLARA 152 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCch--hhCCHHHHHHHHHHHH
Confidence 999999999986 699999986311 1223332 3334444433 33445554 3799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++|||||||++||+.+...+.+.+.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~ 183 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999997643
No 216
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-37 Score=314.61 Aligned_cols=177 Identities=32% Similarity=0.479 Sum_probs=145.0
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--C
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--D 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i--~ 520 (637)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+. +
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999964 3599999999999999999999999999999999999985 799999999998653 3
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
...+|+.++||+|++.+|+.|++||+.++.. ...+. +++.++++.+++.+.+. +.+++.+ ..||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~--~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSPA--LSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCh--hhCCHHHHHH
Confidence 4567889999999999999999999987521 11222 23555666666543221 1222221 4799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 199 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987643
No 217
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.7e-37 Score=304.88 Aligned_cols=169 Identities=27% Similarity=0.346 Sum_probs=141.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++|++++|+++ ++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+. ..++.+
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNEE---PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCCc---eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 49999999999743 599999999999999999999999999999999999999999999999998752 346689
Q ss_pred EEEccCCccccc-cHHHHHhcCCC-CCC-CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~-~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
+|++|++.+|.+ |++||+.++.. ... .++.+.++++..++.+. +++.+ ..||||||||++||||++++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV--RQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh--hhCCHHHHHHHHHHHHHhcC
Confidence 999999999986 99999977521 112 23444556665554333 23322 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||||++||+++.+.+.+.+.+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISA 182 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999997644
No 218
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=314.67 Aligned_cols=174 Identities=32% Similarity=0.483 Sum_probs=145.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i--~~ 521 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999974 3699999999999999999999999999999999999984 899999999998653 34
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCCC-C-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
..+|+.++|++|++.+|..|++||+.++... . ..++++.++++..++++.+.. ..+. ..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 5678899999999999999999999875211 1 123346667777776554322 1222 48999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987644
No 219
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=314.32 Aligned_cols=176 Identities=33% Similarity=0.446 Sum_probs=144.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i~~ 521 (637)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 58999999999743 599999999999999999999999999999999999974 79999999999853 456
Q ss_pred HHHhcceEEEccCCcccc-ccHHHHHhcCCC--C----CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--K----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~----~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
..+|+.|+||+|++.+|. .|++||+.++.. . ...++++.++++..++.+++... ++.. -..|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR---LDKP--GGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhH---hhCC--cccCCHHHHH
Confidence 678999999999999997 599999987521 0 11124556667777765443211 1111 1479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887643
No 220
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=314.19 Aligned_cols=174 Identities=34% Similarity=0.513 Sum_probs=144.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CCceEEECCEeCCCC--CH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDL--DI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~---y~p--~~G~I~idG~di~~i--~~ 521 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++| ++|+|.+||+++.+. +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 3599999999999999999999999999999999997 454 589999999998764 35
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CCC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
..+|+.|+||+|++.+|+.|++||+.++.. ... .++++.++++..++.+++. +.... ..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999987521 111 2234566666666654443 22222 48999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998644
No 221
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7e-37 Score=311.47 Aligned_cols=173 Identities=24% Similarity=0.289 Sum_probs=139.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~i~~~~l-R~ 526 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||+++.+++.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 579999999974 3699999999999999999999999999999999999 57999999999999998887665 45
Q ss_pred ceEEEccCCccccc-cHHHHHhcCCC--C------CCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHH
Q 006650 527 KIGFVGQEPQLLQM-DIKSNIMYGCP--K------DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (637)
Q Consensus 527 ~I~~V~Qd~~LF~g-TI~eNI~~g~~--~------~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQk 593 (637)
.++||+|++.+|.+ |++||+.+... . ..+ ++++.++++..++.+.. .+..++ ..||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~-~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN-EGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc-cCcCHHHH
Confidence 59999999999975 79999976411 0 011 13344455555543211 122221 24999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988643
No 222
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-37 Score=312.22 Aligned_cols=176 Identities=33% Similarity=0.506 Sum_probs=146.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCC-CCCHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~-~i~~~ 522 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5899999999974 3699999999999999999999999999999999999996 5999999999985 45677
Q ss_pred HHhcceEEEccCCccccccHHHHHhcCCC-CCCC-----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~-----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
.+|+.++||+|++.+|..|++||+.++.. .... ++++.++++.+++++.+.. .++.. -..||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~--~~~LS~G~~qrv 154 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD---RLKSH--AFGLSGGQQQRL 154 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH---HhhcC--cccCCHHHHHHH
Confidence 88999999999999999999999987621 1111 2345556666666544421 11221 147999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997543
No 223
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-37 Score=312.21 Aligned_cols=176 Identities=34% Similarity=0.539 Sum_probs=145.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i--~~ 521 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999974 3599999999999999999999999999999999999986 799999999998653 34
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
..+|+.++||+|++.+|+.|++||+.++.. ... + ++++.++++.+++.+.+.... +. .-..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL---KK--SALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh---hC--CcccCCHHHHHH
Confidence 577899999999999999999999987621 111 1 234566777777644333211 11 124799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++||||++++|++||||||||+||+++...+.+.+.+
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887643
No 224
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=314.97 Aligned_cols=173 Identities=27% Similarity=0.464 Sum_probs=143.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCC-HH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i~-~~ 522 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+++ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3699999999999999999999999999999999999996 6999999999998764 45
Q ss_pred HHhcceEEEccCCccccccHHHHHhcCCC--CCCCHHHHH----HHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHH
Q 006650 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~de~v~----~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQ 594 (637)
.+|+.|+||+|++.+|+.|++|||.++.. ...++++.. ++++..++.+ .+++.+.. ..|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 78899999999999999999999997621 113444443 2333444332 22233333 489999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++|||||+++|++|||||||++||+.+.+.+.+.+.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 207 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIR 207 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998753
No 225
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-36 Score=299.81 Aligned_cols=165 Identities=21% Similarity=0.354 Sum_probs=141.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ ..++ ++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999963 2355 599999999999999999999999999999999999999999999887643 45699
Q ss_pred EEccCCc-cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 006650 530 FVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 530 ~V~Qd~~-LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~I 608 (637)
|++|++. +|+.|++|||.++......++++.++++..+++++.++. ...||||||||++||||++++|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEK---------CYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccC---------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 478999999988632222456778888888887765542 247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~il 631 (637)
+||||||++||+++.+.+.+.+.
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~ 167 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIV 167 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 226
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=312.99 Aligned_cols=172 Identities=30% Similarity=0.402 Sum_probs=146.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCC-----C
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D 520 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~i-----~ 520 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 36999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcceEEEccCCcccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC
Q 006650 521 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~ 586 (637)
...+|+.++|++|++.+|. .|++||+.++... ...++++.++++..++.+++++.| .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 4567889999999999988 5999999876211 011345677777777766655422 4
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.||||||||++|||||+.+|++|||||||++||.++...+.+.|.+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999998643
No 227
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.3e-36 Score=292.15 Aligned_cols=136 Identities=35% Similarity=0.524 Sum_probs=125.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5799999999743 36999999999999999999999999999999999999999999999883 6899
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~IL 609 (637)
|++|++.++++|++|||.++ ....||||||||++||||++++|+++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999764 12579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Q 006650 610 LLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++||.++.+.+.+.+.+
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHH
Confidence 99999999999999999987643
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=314.34 Aligned_cols=174 Identities=34% Similarity=0.495 Sum_probs=142.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~~ 521 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 259999999999999999999999999999999999997 699999999999853 456
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CCCCH-----HHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKN-----EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~d-----e~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
..+|+.|+|++|++.+|..|++||+.++.. .+.++ +.+.++++..++.+.+ +...+. ..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999987521 12222 2233444444332222 222222 48999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997643
No 229
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-36 Score=292.78 Aligned_cols=141 Identities=58% Similarity=0.907 Sum_probs=132.9
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++++|+++ +.++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 5799999999754 236999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~IL 609 (637)
|++|++.+|+.|+.||+ ||||||||++||||++++|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Q 006650 610 LLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++||+++...+.+.+.+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 119 ILDEATSALDPETEALILEALRA 141 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999987643
No 230
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=314.19 Aligned_cols=174 Identities=35% Similarity=0.495 Sum_probs=144.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCCC--H
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--I 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~i~--~ 521 (637)
+=+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.+.+ .
T Consensus 5 ~~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 5 HASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 4579999999964 369999999999999999999999999999999999986 47999999999987653 3
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CC------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQ 592 (637)
..+|+.++||+|++.+|++|++||+.++.. .+ ..++++.++++..++.+++. +.++. ..|||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 154 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQ 154 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHH
Confidence 467889999999999999999999987621 11 12345566777777654432 12222 4799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||++|||||+++|++|||||||++||+.+.+.+.+.+.+
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987643
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=312.53 Aligned_cols=171 Identities=26% Similarity=0.328 Sum_probs=144.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--------CceEEECCEeCCCCCH
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI 521 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~--------~G~I~idG~di~~i~~ 521 (637)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+++.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcceEEEccCCc-cccccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChH
Q 006650 522 RWLREKIGFVGQEPQ-LLQMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~-LF~gTI~eNI~~g~~~~------~---~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGG 591 (637)
..+|+.++||+|++. +|+.|++||+.++..+. . +++.+.++++..++.++..+- ...||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG 149 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD---------VTTLSGG 149 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHH
Confidence 888999999999986 68899999998862111 1 123455566666654432221 1489999
Q ss_pred HHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALl---------k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++|||||+ .+|++|||||||++||+++...+.+.+.+
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999 59999999999999999999999997644
No 232
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=311.40 Aligned_cols=176 Identities=35% Similarity=0.514 Sum_probs=147.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~~ 521 (637)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3889999999974 359999999999999999999999999999999999875 489999999999875 346
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CCC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
..+|+.++||+|++.+|++|++||+.++.. ... .++++.++++.+++.+++..+ +++. -..||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~Gq~qr 154 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDKS--ALGLSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhCC--cccCCHHHHHH
Confidence 678999999999999999999999987521 111 124566778888887666532 2221 24799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887643
No 233
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.4e-36 Score=319.02 Aligned_cols=170 Identities=20% Similarity=0.341 Sum_probs=143.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ +...+|+++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence 3889999999963 359999999999999999999999999999999999999999999999999977 456788999
Q ss_pred EEEccCCccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
||+||++.+|.+ |++||+.+... ...+ .+++.++++..++.++.++. -+.||||||||++|||||
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK---------IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 999999999976 99999986411 1112 23455555555555443321 147999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+++|++|||||||++||+++.+.+.+.+.
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~ 177 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIK 177 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999764
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=312.43 Aligned_cols=177 Identities=32% Similarity=0.474 Sum_probs=148.1
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~--i~ 520 (637)
+.|+++||+|+|+++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||+++.+ .+
T Consensus 6 ~~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 469999999999642 5999999999999999999999999999999999999985 8999999999853 45
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC-----CCCC-HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~-de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
...+|+.++|++|++.+|..|++||+.++.. +..+ ++++.++++..++.+++..+ .+.. -..|||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgGq~q 157 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK---IHKS--ALDLSGGQQQ 157 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH---hcCC--cccCCHHHHH
Confidence 5678999999999999999999999987521 1111 34567777888776655432 1111 1489999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~ 195 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998654
No 235
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.2e-36 Score=312.47 Aligned_cols=175 Identities=28% Similarity=0.443 Sum_probs=144.3
Q ss_pred cEEEEEEEEECCCC------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH
Q 006650 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~ 522 (637)
-|+++||+++|+++ .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 123699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcceEEEccCCc--ccc-ccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHH
Q 006650 523 WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQ 592 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~--LF~-gTI~eNI~~g~~--~~----~~de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQ 592 (637)
..++.|+||+|++. ++. -|+.+|+.++.. .. ..++++.++++..+++ +..+..| ..|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP---------HMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc---------hhcCHHH
Confidence 67788999999985 443 488999865311 01 1234667778888773 4433221 4799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||++|||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 194 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998654
No 236
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=319.50 Aligned_cols=176 Identities=33% Similarity=0.468 Sum_probs=144.0
Q ss_pred cEEEEEEEEECCCCC-------CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 006650 449 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~ 521 (637)
-|+++||+++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997421 2369999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcceEEEccCCc--ccc-ccHHHHHhcCC------CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCC
Q 006650 522 R---WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 589 (637)
Q Consensus 522 ~---~lR~~I~~V~Qd~~--LF~-gTI~eNI~~g~------~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LS 589 (637)
+ .+|++|+||+|++. |+. .||.+|+.... ......+++.++++.+++++ ++++... ..||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p--~~LS 156 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP--HMFS 156 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC--ccCC
Confidence 4 57889999999984 554 58999986320 01112345677777777642 1233322 4799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++|||||+.+|++||+||||++||..+.+.|.+.+.+
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~ 199 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD 199 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997643
No 237
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=309.48 Aligned_cols=174 Identities=33% Similarity=0.521 Sum_probs=143.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~--i~~ 521 (637)
-|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC-CCC-----CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
..+|+.++||+|++.+|+.|++||+.++.. ... .++++.++++.+++.+.+. ..... ..||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 677889999999999999999999987521 111 1234555566665543332 12222 48999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987643
No 238
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=323.95 Aligned_cols=167 Identities=29% Similarity=0.460 Sum_probs=146.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHHHHh
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRWLR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i----~~~~lR 525 (637)
|++ ||+++|++. .+ |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. +...+|
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 677 999999632 23 99999999999999999999999999999999999999999999998653 244678
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
++|+||+|++.+|. .|++|||.++. ....++++.++++..++.++.++.| ..||||||||++|||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGM-AKSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhh-hhhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 89999999999996 69999999983 3445678888899988877776655 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++||||||||+||+.+.+.+.+.+.+
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988643
No 239
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=312.29 Aligned_cols=177 Identities=31% Similarity=0.421 Sum_probs=147.8
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i~ 520 (637)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999974 2599999999999999999999999999999999999874 69999999999864 34
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCCC-C---CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~---~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
...+|+.|+||+|++.+|+.|+.|||.++... . ..++++.++++.+++.+++... .+.. -..||||||||+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv 170 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKEK--GTALSGGQQQRL 170 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcCC--cccCCHHHHHHH
Confidence 55788999999999999999999999886211 0 1234567778888776555321 1111 147999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998654
No 240
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=317.45 Aligned_cols=175 Identities=33% Similarity=0.509 Sum_probs=146.5
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--i~ 520 (637)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999975 359999999999999999999999999999999999996 689999999999865 34
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCCC------------------CCCHHHHHHHHHHcCHHHHHHcCCCCcccc
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------------------DVKNEDIEWAAKQAYVHEFILSLPCGYETL 582 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~------------------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~ 582 (637)
...+|+.|+||+|++.+|++|++||+.++... +..++++.++++.+++.+. +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 56788999999999999999999999976211 0113345566666655433 3333
Q ss_pred cCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 583 VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 583 vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++. ..||||||||++|||||+++|+||||||||++||+.+...+.+.|.+
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~ 245 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE 245 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 443 48999999999999999999999999999999999999999987643
No 241
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3e-36 Score=303.29 Aligned_cols=175 Identities=29% Similarity=0.428 Sum_probs=138.5
Q ss_pred EEEEEEEEECCCC---C-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC--CE--eCCCCCH
Q 006650 450 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF--PLTDLDI 521 (637)
Q Consensus 450 I~f~nVsF~Y~~~---~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id--G~--di~~i~~ 521 (637)
|+++||+++|++. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+| |. ++.+++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 1369999999999999999999999999999999999999999999998 43 6666665
Q ss_pred HH---H-hcceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChH
Q 006650 522 RW---L-REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (637)
Q Consensus 522 ~~---l-R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGG 591 (637)
.. + ++.++||+|++.+|. .|++|||.+... ...+ ++++.++++..++.+...+ .. ...||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~--~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWH------LP--PATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhh------CC--cccCCHH
Confidence 43 3 467999999999886 599999976310 1122 2344455555555332211 11 2479999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987643
No 242
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.6e-36 Score=294.31 Aligned_cols=141 Identities=29% Similarity=0.515 Sum_probs=129.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~-~~~lR~~ 527 (637)
-|+++|++++| +|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++ .+.+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 899999999999999999999999999999999999999999999999999887 4567889
Q ss_pred eEEEccCC----ccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 528 IGFVGQEP----QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 528 I~~V~Qd~----~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
++||+|++ .+++.|++||+.++. . ||||||||++|||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~-~-----------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS-L-----------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh-h-----------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 355689999998762 1 9999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++.+.+.+.+.+
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998644
No 243
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=315.13 Aligned_cols=177 Identities=34% Similarity=0.452 Sum_probs=143.8
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--C
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~i--~ 520 (637)
..|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||+++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35999999999964 259999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
...+|+.|+||+|++.+|+.|++|||.++.. ... + ++++.++++..++.+.+. +.++.. -..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~~--~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDKN--ALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhCC--hhhCCHHHHH
Confidence 3467899999999999999999999998621 011 1 234556666666543322 112221 1479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 227 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE 227 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987643
No 244
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3e-36 Score=303.16 Aligned_cols=167 Identities=27% Similarity=0.415 Sum_probs=144.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 579999999974 36999999999999999999999999999999999999999999999999876422 35899
Q ss_pred EEccCCcccc-ccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ 607 (637)
|++|++.+|. .|++||+.++.. ...+++++.++++..++++..++-| ..||||||||++||||++++|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 699999986421 1234677888888888877654422 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||||++||+++...+.+.+.+
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~ 169 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRS 169 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 245
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=311.47 Aligned_cols=175 Identities=31% Similarity=0.456 Sum_probs=147.3
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCC----
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT---- 517 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~---- 517 (637)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 457999999999974 2699999999999999999999999999999999999985 7999999998874
Q ss_pred CCCHHHHhcceEEEccCCccccccHHHHHhcCCC-C-----CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCC
Q 006650 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-K-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (637)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~-----~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LS 589 (637)
..+...+|+.|+|++|++.+|.+|++|||.++.. . ...++++.++++.+++.+.+. +..+. ..||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345678999999999999999999999987621 1 112456677777777654332 22333 4899
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||||++|||||+++|+++||||||++||.++.+.+.+.+.
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 205 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS 205 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 246
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-36 Score=304.85 Aligned_cols=168 Identities=32% Similarity=0.510 Sum_probs=146.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++|++++|++ .+|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 579999999963 28999999999999999999999999999999999999999999999999987664 378999
Q ss_pred EEccCCcccc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
||+|++.+|. .|+.||+.++... .. .++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 9999999995 7999999875211 11 2345677888888887776654 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++++|||||++||+++.+.+.+.+.+
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKK 174 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 247
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=310.14 Aligned_cols=176 Identities=30% Similarity=0.398 Sum_probs=149.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--i~~ 521 (637)
.+.+++++++|.+ .++|+|+||+|+|||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 3699999999999999999999999999999999999987 79999999999864 344
Q ss_pred HHHhcceEEEccCCccccccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
..+|+.|+||+|++.+|+.|+.|||.++.. .....+++.++++.+++.+.+.... +. .-..||||||||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~---~~--~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL---KV--SGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh---hC--CcccCCHHHHHHHH
Confidence 577889999999999999999999998731 1112357788888888866654321 11 12489999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~ 194 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998643
No 248
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.4e-36 Score=320.21 Aligned_cols=171 Identities=28% Similarity=0.477 Sum_probs=142.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999974 35999999999999999999999999999999999999999999999999997654 5788999
Q ss_pred EEEccCCccc-cccHHHHHhcCCC-CCCCHHHH----HHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~de~v----~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||||++.+| ..|+.||+.+... ...+.++. .++++.. .+++..++.+ +.||||||||++|||||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-------~L~~~~~~~~--~~LS~G~kqrv~lA~aL 187 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA-------RLESKADARV--SDLSGGMKRRLTLARAL 187 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchhhCCCh--hhCCHHHHHHHHHHHHH
Confidence 9999999996 6799999986311 12232322 2333333 3444455554 37999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.+|++|||||||++||+.+...+.+.+.+
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRS 217 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998644
No 249
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=318.64 Aligned_cols=177 Identities=25% Similarity=0.329 Sum_probs=140.4
Q ss_pred EEEEEEEEECCCCCC-cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCCHHHH
Q 006650 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~----p~~G~I~idG~di~~i~~~~l 524 (637)
|+++||+++|+++.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999975322 359999999999999999999999999999999999998 489999999999999987766
Q ss_pred hc----ceEEEccCCc--ccc-ccHH----HHHhcC--CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChH
Q 006650 525 RE----KIGFVGQEPQ--LLQ-MDIK----SNIMYG--CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (637)
Q Consensus 525 R~----~I~~V~Qd~~--LF~-gTI~----eNI~~g--~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGG 591 (637)
|+ .|+||+|++. ++. .|+. +|+... ......++++.++++.+++.+....+ +. .-..||||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l----~~--~p~~LSgG 157 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL----DV--YPHQLSGG 157 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH----hC--CchhCCHH
Confidence 54 6999999995 332 3455 444432 11112245677788888875432111 11 11479999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++|||||+.+|++||+|||||+||+.+...|.+.+.+
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~ 198 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997643
No 250
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=308.17 Aligned_cols=176 Identities=30% Similarity=0.458 Sum_probs=141.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CCH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 521 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~--i~~ 521 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3889999999974 36999999999999999999999999999999999999875 8999999999875 345
Q ss_pred HHHhcceEEEccCCcccc-ccHHHHHhcCCC-CCC-CHHHHHH----HHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~-~de~v~~----A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
..+|+.|+|++|++.+|. .|+.||+.++.. ... .+++..+ .++..++.+.+ ++.+++.+ ..|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTPA--TGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCCc--ccCCHHHHH
Confidence 678899999999999998 499999987521 111 2333322 33344443322 22333332 479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997643
No 251
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-36 Score=310.58 Aligned_cols=170 Identities=24% Similarity=0.383 Sum_probs=141.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 59999999999742 369999999999999999999999999999999999999999999999998752 2223469
Q ss_pred EEEccCCcc---ccccHHHHHhcCCCC---------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 529 GFVGQEPQL---LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 529 ~~V~Qd~~L---F~gTI~eNI~~g~~~---------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
+|++|++.+ +..++++|+.++... ...++++.++++..++.++.++ .+ ..||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~--~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------QI--GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------Cc--ccCCHHHHHHH
Confidence 999999875 566899998764110 1123456677888888766543 22 36999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987643
No 252
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-36 Score=299.60 Aligned_cols=167 Identities=29% Similarity=0.455 Sum_probs=136.8
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHHh
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~----~~~lR 525 (637)
+++ ||+++|++. .+ |+||+|++ |++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 2 ~~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 345 999999753 34 99999999 999999999999999999999999999999999999986432 34678
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~---~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+.++||+|++.+|. .|++||+.++.... ..++++.++++..++.+..++.| ..||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~a 145 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYP---------AQLSGGEKQRVALARA 145 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCc---------ccCCHHHHHHHHHHHH
Confidence 89999999999995 69999998763211 12234555555555544433221 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++++|++|||||||++||+++.+.+.+.+.+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999987644
No 253
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.5e-36 Score=316.22 Aligned_cols=158 Identities=23% Similarity=0.348 Sum_probs=133.8
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc-cHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIK 543 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~ 543 (637)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++||||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999976 456788999999999999975 999
Q ss_pred HHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 006650 544 SNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (637)
Q Consensus 544 eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaL 618 (637)
||+.+... ...+ ++++.++++..++.+..++.+ +.||||||||++|||||+++|++|||||||++|
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV---------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99987411 1122 334666667766654433221 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006650 619 DSESEHYVKANTLD 632 (637)
Q Consensus 619 D~~tE~~I~~~il~ 632 (637)
|+++.+.+.+.+.+
T Consensus 156 D~~~~~~l~~~l~~ 169 (302)
T TIGR01188 156 DPRTRRAIWDYIRA 169 (302)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999997643
No 254
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=303.77 Aligned_cols=169 Identities=31% Similarity=0.488 Sum_probs=145.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE---eCCCCCHHHHh
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~---di~~i~~~~lR 525 (637)
.|+++|++..|+.. .+++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 48899999999753 6899999999999999999999999999999999999999999999999 55553 3445
Q ss_pred cceEEEccCCccc-cccHHHHHhcCCC-----C--CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 526 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----K--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 526 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~-----~--~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
++||+|+|+.-|| +.||++||+||.+ + .....++.+-++.+++.++-++-| .+||||||||+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP---------~QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP---------AQLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc---------hhcChHHHHHHH
Confidence 7899999999998 8999999999941 1 123456777788888777665555 589999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+||||.-+|++|+||||.+|||+.-.+.+++-+.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr 181 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 181 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999888877653
No 255
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.2e-36 Score=295.12 Aligned_cols=148 Identities=34% Similarity=0.552 Sum_probs=132.2
Q ss_pred cEEEEEEEEECCCCC---CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCCHHH
Q 006650 449 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~---~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~G~I~idG~di~~i~~~~ 523 (637)
.|+++||+|+|++.. +.++|+|+||+|++||.++|+|+||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 589999999997520 246999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhcceEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 524 lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
+|+.|+|++|++.+|. .|++||+.++. . .. .||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-~-~~-------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-K-LR-------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-H-hc-------------------------------cCCHHHHHHHHHHHHH
Confidence 7889999999999987 59999997651 1 00 7999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|+++||||||++||.++.+.+.+.+.+
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999987643
No 256
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-36 Score=294.65 Aligned_cols=146 Identities=25% Similarity=0.423 Sum_probs=130.4
Q ss_pred cEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCCHHHHh
Q 006650 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~G~I~idG~di~~i~~~~lR 525 (637)
.|+++||+|+|+++. +.++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||+++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 589999999997521 246999999999999999999999999999999999987 489999999999885 5778
Q ss_pred cceEEEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
++++|++|++.+|.+ |++||+.++ .. ++ .||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~-~~----------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS-AL----------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH-HH----------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999998875 999999875 10 00 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|++|||||||++||+++...+.+.+.
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~ 152 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLK 152 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999754
No 257
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.2e-35 Score=305.31 Aligned_cols=175 Identities=28% Similarity=0.363 Sum_probs=138.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----CCCCCHHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 523 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d-----i~~i~~~~ 523 (637)
-|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCCc---eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 48999999999742 69999999999999999999999999999999999999999999999998 87776654
Q ss_pred ----HhcceEEEccCCc--cc-cccHHHHHhcCC--CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHH
Q 006650 524 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (637)
Q Consensus 524 ----lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~--~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQ 592 (637)
+|+.++||+|++. ++ ..|+.|||.+.. ....+.++..+ .++++++.++-+ ++..+. ..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3667999999984 33 358888886420 00111122211 234555555322 123333 4899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||++|||||+++|++|||||||++||++++..+.+.+.+
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998643
No 258
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.5e-36 Score=322.24 Aligned_cols=167 Identities=28% Similarity=0.396 Sum_probs=140.6
Q ss_pred EEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE----eCCCCCHHHHh----
Q 006650 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRWLR---- 525 (637)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~----di~~i~~~~lR---- 525 (637)
++..+|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+.+.+|
T Consensus 29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 34445542 35899999999999999999999999999999999999999999999997 67777766553
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
++|+||+|++.+|+ .|++||+.++.. ...+ .+++.++++..++.++.++.| ..||||||||++||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGLA 176 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 57999999999997 799999998721 1122 245677888888877765544 36999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+++|+|||||||||+||+.+.+.+++.+.+
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754
No 259
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=8.7e-36 Score=304.42 Aligned_cols=174 Identities=25% Similarity=0.277 Sum_probs=135.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHHh-c
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLR-E 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~i~~~~lR-~ 526 (637)
|+++||+++|+++ ++|+|+||+|++|+++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....+ +
T Consensus 2 i~~~nl~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVEDK---AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 7899999999742 599999999999999999999999999999999999 579999999999999888876655 5
Q ss_pred ceEEEccCCccccc-cHHHHHhc-------CCCCC-CCHHHHHHHHHHcCHHHHHH--cCCCCcccccCCCCCChHHHHH
Q 006650 527 KIGFVGQEPQLLQM-DIKSNIMY-------GCPKD-VKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 527 ~I~~V~Qd~~LF~g-TI~eNI~~-------g~~~~-~~de~v~~A~~~a~l~~fI~--~lP~G~dT~vge~~LSGGQkQR 595 (637)
.++||+|++.++.. |..+|+.. ....+ ....++.+ .+++.++ .+|+++.+......||||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD-----LMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHH-----HHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 79999999987764 44444322 10000 01111111 1112222 3555555554434799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++||||++++|++|||||||++||+++...+.+.+.
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~ 189 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999998653
No 260
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-35 Score=303.32 Aligned_cols=159 Identities=31% Similarity=0.495 Sum_probs=141.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| +..|
T Consensus 4 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECCc---eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 48999999999742 599999999999999999999999999999999999999999999987 3579
Q ss_pred EEEccCCcccc---ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 529 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 529 ~~V~Qd~~LF~---gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
+|++|++.++. .|+++|+.+. + ..+++++.++++..++.+++++.+ ..||||||||++|||||+++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999998876 4899998765 2 456788999999999988776532 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||||++||+++...+.+.+.+
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~ 165 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQ 165 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999987643
No 261
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-35 Score=318.69 Aligned_cols=164 Identities=32% Similarity=0.495 Sum_probs=139.4
Q ss_pred EEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHHhcceE
Q 006650 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG 529 (637)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~----~~~lR~~I~ 529 (637)
||+++|++. . + |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.|+
T Consensus 4 ~l~~~~~~~---~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF---S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE---E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999642 2 4 999999999999999999999999999999999999999999999986543 346788999
Q ss_pred EEccCCcccc-ccHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
||+|++.+|. .|++||+.++.. ... ++++.++++..++.++.++.| ..||||||||++|||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 9999999997 599999998732 211 234666777777766655543 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++||||||||+||+++.+.+.+.+.+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998644
No 262
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-35 Score=313.79 Aligned_cols=175 Identities=26% Similarity=0.369 Sum_probs=139.5
Q ss_pred cEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHH
Q 006650 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~i~~~~l 524 (637)
-++++||+++|+.+. ...+++||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 236999999999999999999999999999999999999996 9999999999999987766
Q ss_pred h----cceEEEccCC--cccc-ccHHHHHhcCC--CCCCCHHH----HHHHHHHcCHHHHHHcCCCCcccccCC--CCCC
Q 006650 525 R----EKIGFVGQEP--QLLQ-MDIKSNIMYGC--PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (637)
Q Consensus 525 R----~~I~~V~Qd~--~LF~-gTI~eNI~~g~--~~~~~de~----v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LS 589 (637)
| +.|+||+|++ .++. .|+.+|+.... ....+.++ +.++++.++ ||++++. ++. ..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~~~-~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEARKR-MKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChHHH-hcCCcccCC
Confidence 4 4799999998 3543 57777774320 01223332 333444433 4444332 333 4899
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||||++|||||+.+|++||+|||||+||..+...|.+.+.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~ 205 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLN 205 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999753
No 263
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.5e-35 Score=306.30 Aligned_cols=176 Identities=32% Similarity=0.453 Sum_probs=141.4
Q ss_pred EEEEEEEEECCCC------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH--
Q 006650 450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-- 521 (637)
Q Consensus 450 I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-- 521 (637)
|+++||+|+|++. .+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999731 02469999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhcceEEEccCCc--cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHcCCCCccccc-CC--CCCChHH
Q 006650 522 -RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD--DLLSGGQ 592 (637)
Q Consensus 522 -~~lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~--~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~v-ge--~~LSGGQ 592 (637)
..+|+.++||+|++. ++ +.|++||+.+... .+.+.+ .....+++.+..+ |+++.+ +. ..|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 43 5799999865311 011111 1122344555543 565432 32 4899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 196 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988644
No 264
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-36 Score=305.86 Aligned_cols=176 Identities=30% Similarity=0.431 Sum_probs=143.7
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC------EeCCCCCH
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDI 521 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG------~di~~i~~ 521 (637)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| +++.+++.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999974 3699999999999999999999999999999999999999996666654 67777777
Q ss_pred HHHhcceEEEccCCccccc-cHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 522 RWLREKIGFVGQEPQLLQM-DIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-~~-~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
..+|+.++|++|++.+|.+ |++||+.++... .. ++ +++.++++..++++++... ++.. ...|||||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~--~~~LS~G~~q 160 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR---LNSP--ASQLSGGQQQ 160 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhh---hcCC--cccCCHHHHH
Confidence 8899999999999999975 999999976221 11 22 2345666666665433111 1111 1479999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++||||++++|+++||||||++||..+++.+.+.+.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~ 197 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864
No 265
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=313.08 Aligned_cols=174 Identities=21% Similarity=0.299 Sum_probs=142.8
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCCHHHH
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~----p~~G~I~idG~di~~i~~~~l 524 (637)
|+++||+++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+.+.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996432 2359999999999999999999999999999999999986 689999999999998887765
Q ss_pred h----cceEEEccCCcc--c-cccHHHHHhcCC--C---C----C--CCHHHHHHHHHHcCHHH---HHHcCCCCccccc
Q 006650 525 R----EKIGFVGQEPQL--L-QMDIKSNIMYGC--P---K----D--VKNEDIEWAAKQAYVHE---FILSLPCGYETLV 583 (637)
Q Consensus 525 R----~~I~~V~Qd~~L--F-~gTI~eNI~~g~--~---~----~--~~de~v~~A~~~a~l~~---fI~~lP~G~dT~v 583 (637)
+ +.|+||+|++.. + ..||.+|+.... . . + ..++++.++++.+++++ ..++.|
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------- 156 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------- 156 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc-------
Confidence 3 479999999973 3 468999986420 0 0 0 11346677788888753 233333
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 584 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 584 ge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
..||||||||++|||||+.+|++||+|||||+||+.+...|.+.+.+
T Consensus 157 --~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 203 (330)
T PRK15093 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTR 203 (330)
T ss_pred --hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999997643
No 266
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.4e-35 Score=301.07 Aligned_cols=175 Identities=28% Similarity=0.365 Sum_probs=137.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----CCCCCHHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 523 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d-----i~~i~~~~ 523 (637)
.|+++||+++|+++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 48999999999743 58999999999999999999999999999999999999999999999988 77666553
Q ss_pred ----HhcceEEEccCCcc---ccccHHHHHhcCC--CCCCCHHHHHHHHHHcCHHHHHHcCCCCcc-cccCC--CCCChH
Q 006650 524 ----LREKIGFVGQEPQL---LQMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGG 591 (637)
Q Consensus 524 ----lR~~I~~V~Qd~~L---F~gTI~eNI~~g~--~~~~~de~v~~A~~~a~l~~fI~~lP~G~d-T~vge--~~LSGG 591 (637)
+++.|+|++|++.+ +..|+.+|+.+.. .......+. ...++++++.+. ++ +.... ..||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 34679999999852 3458889986420 000011111 123445555552 32 33333 489999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
||||++|||||+++|++|||||||++||+++.+.+.+.+.+.
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~ 194 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 194 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987543
No 267
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3e-35 Score=307.06 Aligned_cols=172 Identities=30% Similarity=0.486 Sum_probs=148.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+.+|++ +..+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.|..+- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 13699999999999999999999999999999999999999999999999998765 78899999
Q ss_pred EEEccCCccc-cccHHHHHhcCC----CC-CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGC----PK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~----~~-~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||||++.++ .-|++||+.|.. .+ +..++++.+.++..++.+.-+ .. -+.||||||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~-------~~--~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN-------KK--VRTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhC-------cc--hhhcCHHHHHHHHHHHHH
Confidence 9999999977 679999998741 11 123568888999988876221 11 147999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.+|++||||||||+||+.+...+.+.|.+
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998644
No 268
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.8e-35 Score=300.46 Aligned_cols=173 Identities=25% Similarity=0.295 Sum_probs=141.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++.+..++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4999999999974 3599999999999999999999999999999999998 7899999999999999888766665
Q ss_pred -ceEEEccCCccccc-cHHHHHhcCCCC--------CCC----HHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChH
Q 006650 527 -KIGFVGQEPQLLQM-DIKSNIMYGCPK--------DVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGG 591 (637)
Q Consensus 527 -~I~~V~Qd~~LF~g-TI~eNI~~g~~~--------~~~----de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGG 591 (637)
.+++++|++.+|.+ |+.+|+.++... +.+ .+++.++++..++. ++.. ..++ ..||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~-~~LSgG 155 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-------RNVN-EGFSGG 155 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhc-------cccc-cCCCHH
Confidence 48999999999975 789998764211 111 12344555555553 1222 2221 149999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||++|||||+++|++|||||||++||.++...+.+.+.+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987644
No 269
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.2e-35 Score=301.54 Aligned_cols=170 Identities=25% Similarity=0.369 Sum_probs=139.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEECCEeCCCCCHHHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p----~~G~I~idG~di~~i~~~~l 524 (637)
.|+++||+|+| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 2599999999999999999999999999999999999999 999999999998632 233
Q ss_pred hcceEEEccCCc-ccc--ccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 006650 525 REKIGFVGQEPQ-LLQ--MDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 596 (637)
Q Consensus 525 R~~I~~V~Qd~~-LF~--gTI~eNI~~g~---~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRI 596 (637)
++.|+||+|++. .|. .|+.+|+.+.. .....++++.++++..++.++ ++.++. ..||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 567999999985 444 58888875410 112345677888888777542 112232 48999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988643
No 270
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2e-35 Score=287.52 Aligned_cols=141 Identities=38% Similarity=0.531 Sum_probs=129.2
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
|++||+|+|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 58999999974 359999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 006650 531 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (637)
Q Consensus 531 V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILI 610 (637)
++| +++..++.+++++.+ ..||||||||++||||++++|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 677778877765422 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH
Q 006650 611 LDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~il 631 (637)
|||||++||+++...+.+.+.
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~ 141 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLR 141 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHH
Confidence 999999999999999998763
No 271
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=8.5e-35 Score=287.86 Aligned_cols=146 Identities=29% Similarity=0.396 Sum_probs=127.4
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~i~~~~l-R~ 526 (637)
++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 579999999974 3699999999999999999999999999999999999 68999999999999999887654 55
Q ss_pred ceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
.++||+|++.+|+++..+|+. ... ...||||||||++|||||+++|
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~~---------~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RYV---------NEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hhc---------cccCCHHHHHHHHHHHHHhcCC
Confidence 699999999999765444332 010 1469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++||||||++||+++...+.+.+.+
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINK 149 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999988654
No 272
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.1e-35 Score=278.41 Aligned_cols=126 Identities=33% Similarity=0.474 Sum_probs=118.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~I 528 (637)
|+++||+++|+++ ++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||+++.+.+. +..|+++
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 5799999999743 69999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred EEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 006650 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~I 608 (637)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||||++||.++.+.+.+.+.+
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999998643
No 273
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-35 Score=328.82 Aligned_cols=172 Identities=26% Similarity=0.369 Sum_probs=140.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~ 527 (637)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 259999999999999999999999999999999999999999999999999976553 457889
Q ss_pred eEEEccCCccccc-cHHHHHhcCCCC---C-CCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCPK---D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~~---~-~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
|+||+|++.+|.. |++||+.++... . .+. +++.++++..++.+ -.+..+ ..||||||||++|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~--~~LSgGq~qrv~l 151 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTPL--KYLSIGQRQMVEI 151 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCch--hhCCHHHHHHHHH
Confidence 9999999999875 999999986311 1 122 23333333333211 112111 3799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++|||||||++||+++.+.+.+.+.+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987643
No 274
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.8e-35 Score=326.33 Aligned_cols=172 Identities=27% Similarity=0.386 Sum_probs=144.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh-cc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR-~~ 527 (637)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999964 3599999999999999999999999999999999999999999999999999888776655 56
Q ss_pred eEEEccCCccccc-cHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~~~-~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
||||+|++.+|.. |++||+.++.... ..++++.++++..++.++.+ ..+ ..||||||||++|||||+++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~--~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-------SSA--GSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-------CCh--hhCCHHHHHHHHHHHHHHcC
Confidence 9999999998874 9999999873211 12345556666665543222 111 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||||++||+++...+.+.+.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999997644
No 275
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=328.77 Aligned_cols=174 Identities=26% Similarity=0.400 Sum_probs=140.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHH-Hh
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~i~~~~-lR 525 (637)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred cceEEEccCCcccc-ccHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 006650 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 598 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~----~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaI 598 (637)
+.||||+|++.+|. .|++|||.++... ..+.++..+ .+.++++.+ |++..... ..||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999999886 5999999987321 112222211 122333332 23222222 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+.+|++||||||||+||+++...+.+.+.+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997643
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-35 Score=328.49 Aligned_cols=172 Identities=24% Similarity=0.341 Sum_probs=140.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~ 527 (637)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999964 35999999999999999999999999999999999999999999999999998887654 4567
Q ss_pred eEEEccCCccccc-cHHHHHhcCCCC-----C---CCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCPK-----D---VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~~-----~---~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
|+||+|++.+|.. |++||+.++... . .+. +++.++++..++.+. .+..+ ..|||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~--~~LSgG~~q 152 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LDEKV--ANLSISHKQ 152 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cccch--hhCCHHHHH
Confidence 9999999998874 999999876210 1 111 223333333333211 12221 379999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++||||||||+||+++...+.+.|.+
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997643
No 277
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.7e-35 Score=327.19 Aligned_cols=171 Identities=25% Similarity=0.341 Sum_probs=138.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~ 527 (637)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999997766544 4678
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCCC-----CCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
|+||+|++.+|. -|++||+.++... ..+.+ ++.++++..++.+. .|..+ ..||||||||++
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LSgG~~qrv~ 151 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SDKLV--GELSIGEQQMVE 151 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------ccCch--hhCCHHHHHHHH
Confidence 999999999886 5999999986211 11222 23333333333211 11111 379999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||||+.+|++|||||||++||+++.+.+.+.+.
T Consensus 152 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (501)
T PRK10762 152 IAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185 (501)
T ss_pred HHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.1e-34 Score=294.39 Aligned_cols=157 Identities=28% Similarity=0.422 Sum_probs=127.5
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEc-cCCccc-cccHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDIK 543 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~-Qd~~LF-~gTI~ 543 (637)
++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+. ...+|++++|++ |++.+| ..|++
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcHH
Confidence 699999999999999999999999999999999999999999999999987653 356788999997 667776 67999
Q ss_pred HHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 006650 544 SNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (637)
Q Consensus 544 eNI~~g~~-~~~~de~----v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaL 618 (637)
||+.+... ...+.++ +.++++..++.+. .|+.+ ..||||||||++|||||+++|++|||||||++|
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTPV--RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 99976521 1223333 3334444444332 33333 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006650 619 DSESEHYVKANTLD 632 (637)
Q Consensus 619 D~~tE~~I~~~il~ 632 (637)
|+++...+.+.+.+
T Consensus 185 D~~~~~~l~~~l~~ 198 (236)
T cd03267 185 DVVAQENIRNFLKE 198 (236)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998644
No 279
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2e-34 Score=291.33 Aligned_cols=151 Identities=34% Similarity=0.464 Sum_probs=127.1
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcccc-ccHHHHH
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 546 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI 546 (637)
|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+.+ .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5899999999999999999999999999999999999999999999999775532 489999999997 6999999
Q ss_pred hcCCC---CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 006650 547 MYGCP---KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (637)
Q Consensus 547 ~~g~~---~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD 619 (637)
.++.. +..++ +++.++++..++.++.++.| ..||||||||++|||||+++|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 87511 12232 23556666666655544322 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006650 620 SESEHYVKANTLD 632 (637)
Q Consensus 620 ~~tE~~I~~~il~ 632 (637)
+.+.+.+.+.+.+
T Consensus 147 ~~~~~~l~~~l~~ 159 (230)
T TIGR01184 147 ALTRGNLQEELMQ 159 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.5e-34 Score=292.81 Aligned_cols=166 Identities=22% Similarity=0.343 Sum_probs=137.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++++||+++ .+|+|+||+|++||++||+|+||||||||+++|+|++++ +|+|.+||+++.+.+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence 357888884 179999999999999999999999999999999999965 999999999999888888899999
Q ss_pred EEccCCc-cccccHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 530 FVGQEPQ-LLQMDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 530 ~V~Qd~~-LF~gTI~eNI~~g~~~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
||+|++. ++..|++||+.++.....+ ++++.++++..++.+..++.+ ..||||||||++|||||++
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---------NQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 9999975 5578999999987321112 234555666665544433221 4799999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 -------DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 -------~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++|||||||++||+++...+.+.+.+
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~ 178 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 6799999999999999999999987643
No 281
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-34 Score=266.48 Aligned_cols=178 Identities=30% Similarity=0.411 Sum_probs=147.6
Q ss_pred cEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HH
Q 006650 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~---~l 524 (637)
-|++++++..-+... ...+|++|+|.|++||.+|||||||||||||+-+|+|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 488889988886443 24699999999999999999999999999999999999999999999999999999865 34
Q ss_pred h-cceEEEccCCccc-cccHHHHHhcCCC---CCCCH--HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 525 R-EKIGFVGQEPQLL-QMDIKSNIMYGCP---KDVKN--EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 525 R-~~I~~V~Qd~~LF-~gTI~eNI~~g~~---~~~~d--e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
| +++|+|+|..+|. +.|-.||+.+-.. +...| +.-.+-++++|+.+-+...| .+|||||+||+|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence 4 5699999999988 7899999986421 11111 22344556666655555544 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||||+.-.|+||+-||||.+||.+|..+|.+.++....
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr 194 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998876543
No 282
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.6e-34 Score=320.55 Aligned_cols=168 Identities=21% Similarity=0.209 Sum_probs=146.5
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+|+++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 8999999999743 5999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEccCCcc---------ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 530 FVGQEPQL---------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 530 ~V~Qd~~L---------F~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
||+|++.+ +..|++||+.++ . ..++++.++++..++.+..++.| ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-V--KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-h--hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHHH
Confidence 99998753 256999998765 2 13567788888888776654433 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++||||||||+||+++.+.+.+.+.+
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 180 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLAS 180 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999997643
No 283
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=321.54 Aligned_cols=171 Identities=26% Similarity=0.340 Sum_probs=137.9
Q ss_pred EEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcceEE
Q 006650 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF 530 (637)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~I~~ 530 (637)
++||+++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4799999964 369999999999999999999999999999999999999999999999999977654 456788999
Q ss_pred EccCCcccc-ccHHHHHhcCCCC--C--CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 006650 531 VGQEPQLLQ-MDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 531 V~Qd~~LF~-gTI~eNI~~g~~~--~--~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALl 603 (637)
|+|++.+|. .|++||+.++... . .+.++..+ .+.+.++.+ |++..... ..||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 6999999986311 1 12222221 123344443 34333332 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||+++...+.+.+.+
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987543
No 284
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=327.96 Aligned_cols=175 Identities=33% Similarity=0.466 Sum_probs=143.9
Q ss_pred cEEEEEEEEECCCCC--------CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 006650 449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~--------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~ 520 (637)
-|+++||+++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 499999999996321 135999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhcceEEEccCCc--ccc-ccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCHH-HHHHcCCCCcccccCCCC
Q 006650 521 IR---WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL 587 (637)
Q Consensus 521 ~~---~lR~~I~~V~Qd~~--LF~-gTI~eNI~~g~~-~~-----~~de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~ 587 (637)
.. .+|++|+||+|+++ ++. .|+.||+.++.. .. ..++++.++++..++. +..++.| ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 43 46788999999984 664 699999976310 01 1124556666776663 3444333 47
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||||++|||||+.+|++||||||||+||..+.+.|.+.|.+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998644
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6e-34 Score=319.55 Aligned_cols=173 Identities=27% Similarity=0.401 Sum_probs=138.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHH-Hhc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~i~~~~-lR~ 526 (637)
|+++||+++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++| ++|+|.+||+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3599999999999999999999999999999999999997 7999999999998877654 467
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHcCCCCcccccC-C--CCCChHHHHHHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVD-D--DLLSGGQKQRIA 597 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~-----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vg-e--~~LSGGQkQRIa 597 (637)
.|+||+|++.+|. .|++||+.++.... .+.++..+ .+++.++.+ |++.... . ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 8999999998886 49999998863110 11222211 122333332 2221111 1 379999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997543
No 286
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.7e-33 Score=323.23 Aligned_cols=159 Identities=28% Similarity=0.448 Sum_probs=132.4
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--CceEEECCEeCCCCCHHHHhcceEEEccCCcccc-cc
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MD 541 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~--~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-gT 541 (637)
+.+|+|+|++++|||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. +..++++|||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999985 899999999874 245678999999999995 69
Q ss_pred HHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHc--CCCCcccccCC---CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 006650 542 IKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAILLLD 612 (637)
Q Consensus 542 I~eNI~~g~----~~~~~de~v~~A~~~a~l~~fI~~--lP~G~dT~vge---~~LSGGQkQRIaIARALlk~p~ILILD 612 (637)
++||+.++. +.+.++++..+. +++.++. |++..||.+|+ +.||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 123344433222 2233333 44556999986 389999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 006650 613 EATSALDSESEHYVKANTLD 632 (637)
Q Consensus 613 EaTSaLD~~tE~~I~~~il~ 632 (637)
||||+||+.++..+.+.+.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999998643
No 287
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.2e-33 Score=285.66 Aligned_cols=156 Identities=29% Similarity=0.389 Sum_probs=125.3
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEECCEeCCCCCHHHHhcceEEEccCCc-ccc--
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LLQ-- 539 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p----~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~-LF~-- 539 (637)
+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+. +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998764 233468999999995 444
Q ss_pred ccHHHHHhcCC----CCC-CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 006650 540 MDIKSNIMYGC----PKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 612 (637)
Q Consensus 540 gTI~eNI~~g~----~~~-~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILD 612 (637)
.|+.||+.+.. ... ..++++.++++..++++ + ++.... ..||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 58999986431 111 11234666666666542 1 122222 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 006650 613 EATSALDSESEHYVKANTLD 632 (637)
Q Consensus 613 EaTSaLD~~tE~~I~~~il~ 632 (637)
|||++||+++.+.+.+.+.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~ 170 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRE 170 (230)
T ss_pred CCccccCHHHHHHHHHHHHH
Confidence 99999999999999988643
No 288
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=322.18 Aligned_cols=176 Identities=36% Similarity=0.469 Sum_probs=146.9
Q ss_pred cEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH---
Q 006650 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l--- 524 (637)
-|+++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 2469999999999999999999999999999999999999999999999999999887764
Q ss_pred -hcceEEEccCCcccc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 525 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 525 -R~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
|+.++|++|++++|+ .|+.||+.++... ..+ ++++.++++..++++++++.| ..||||||||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 678999999999996 5999999874210 111 223445555555555544433 489999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|||||+++|++|||||||++||+++.+.+.+.+ +++
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll-~~l 190 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAIL-HQL 190 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999975 444
No 289
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2e-33 Score=317.34 Aligned_cols=175 Identities=30% Similarity=0.410 Sum_probs=140.9
Q ss_pred cEEEEEEEEECCCC-CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCCHH
Q 006650 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i~~~ 522 (637)
-|+++||+++|+++ .+.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||+++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999732 124699999999999999999999999999999999999997 799999999999887754
Q ss_pred H---Hh-cceEEEccCCc--cc-cccHHHHHhcCC-----CCC-CCHHHHHHHHHHcCHHHH---HHcCCCCcccccCCC
Q 006650 523 W---LR-EKIGFVGQEPQ--LL-QMDIKSNIMYGC-----PKD-VKNEDIEWAAKQAYVHEF---ILSLPCGYETLVDDD 586 (637)
Q Consensus 523 ~---lR-~~I~~V~Qd~~--LF-~gTI~eNI~~g~-----~~~-~~de~v~~A~~~a~l~~f---I~~lP~G~dT~vge~ 586 (637)
. +| ++||||+|++. ++ ..|++||+.++. .+. ...+++.++++..++.++ .++.| .
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---------~ 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP---------H 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC---------c
Confidence 3 34 57999999985 44 368999986421 111 123456667777766432 22211 4
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.||||||||++|||||+.+|++||||||||+||+++.+.+.+.+.+
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999997644
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-33 Score=318.98 Aligned_cols=174 Identities=33% Similarity=0.486 Sum_probs=140.4
Q ss_pred cEEEEEEEEECCCC--------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 006650 449 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~--------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~ 520 (637)
-|+++||+++|+++ .+..+|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|++||.++.+++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 49999999999631 1236999999999999999999999999999999999999 58999999999998776
Q ss_pred HH---HHhcceEEEccCC--cccc-ccHHHHHhcCCC---CCCC----HHHHHHHHHHcCHH-HHHHcCCCCcccccCCC
Q 006650 521 IR---WLREKIGFVGQEP--QLLQ-MDIKSNIMYGCP---KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD 586 (637)
Q Consensus 521 ~~---~lR~~I~~V~Qd~--~LF~-gTI~eNI~~g~~---~~~~----de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~ 586 (637)
.. .+|++|+||+|++ .+|. .|++||+.++.. ...+ ++++.++++..++. +..++.| .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP---------A 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC---------c
Confidence 54 3578899999998 3665 599999987511 0111 23445555555553 2333222 4
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.||||||||++|||||+.+|++|||||||++||+.+...+.+.+.+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999997643
No 291
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=5.7e-34 Score=264.12 Aligned_cols=134 Identities=44% Similarity=0.692 Sum_probs=123.3
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcccccc-HHHHH
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNI 546 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gT-I~eNI 546 (637)
|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 006650 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (637)
Q Consensus 547 ~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTS 616 (637)
..++++.++++..++.+ ..++.++. ..||||||||++|||||+++|+++|||||||
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23677888888888765 24666665 4899999999999999999999999999997
No 292
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=317.53 Aligned_cols=176 Identities=24% Similarity=0.414 Sum_probs=138.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECCEeCCCCCH-HHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~idG~di~~i~~-~~lR~ 526 (637)
-|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4999999999963212469999999999999999999999999999999999999 599999999999876543 45678
Q ss_pred ceEEEccCC---ccc-cccHHHHHhcCCCCC------CCHHHHHHHHHHcCHHHHHHcCCCCccc-ccCC--CCCChHHH
Q 006650 527 KIGFVGQEP---QLL-QMDIKSNIMYGCPKD------VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQK 593 (637)
Q Consensus 527 ~I~~V~Qd~---~LF-~gTI~eNI~~g~~~~------~~de~v~~A~~~a~l~~fI~~lP~G~dT-~vge--~~LSGGQk 593 (637)
.|+||+|++ .+| ..|+.||+.++.... .+.++. ...+++.++.+ |++. .... ..||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 569999998752100 111111 12234445544 3322 1222 48999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||++|||||+++|++||||||||+||+.+.+.+.+.+.
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 449 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLIN 449 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHH
Confidence 99999999999999999999999999999999998754
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=321.62 Aligned_cols=176 Identities=27% Similarity=0.399 Sum_probs=138.9
Q ss_pred cEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC----------
Q 006650 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---------- 517 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~---------- 517 (637)
-|+++||+++|++.. +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996422 246999999999999999999999999999999999999999999999998552
Q ss_pred CCCHH---HHh-cceEEEccCC--cccc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHH---HHHcCCCCccc
Q 006650 518 DLDIR---WLR-EKIGFVGQEP--QLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHE---FILSLPCGYET 581 (637)
Q Consensus 518 ~i~~~---~lR-~~I~~V~Qd~--~LF~-gTI~eNI~~g~~--~~~~d----e~v~~A~~~a~l~~---fI~~lP~G~dT 581 (637)
+.+.. .+| +.||||+|+| .++. .|+.|||.++.. ...+. +++.++++..++.+ ..++.|
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~----- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP----- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC-----
Confidence 22322 334 5799999998 5775 599999987511 01222 34555666665521 222211
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 582 ~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+ +++
T Consensus 167 ----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll-~~l 214 (623)
T PRK10261 167 ----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI-KVL 214 (623)
T ss_pred ----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH-HHH
Confidence 479999999999999999999999999999999999999999965 444
No 294
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.3e-34 Score=326.13 Aligned_cols=176 Identities=24% Similarity=0.382 Sum_probs=145.4
Q ss_pred CcEEEEEEEEECCCCC------CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCC
Q 006650 448 GHVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTD 518 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~ 518 (637)
.+++|.+|. +++... ++++|+|+|++++|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~- 93 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID- 93 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-
Confidence 467788777 664321 457999999999999999999999999999999999999885 899999999875
Q ss_pred CCHHHHhcceEEEccCCcccc-ccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHc--CCCCcccccCC----CC
Q 006650 519 LDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD----DL 587 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~----~~~~de~v~~A~~~a~l~~fI~~--lP~G~dT~vge----~~ 587 (637)
...+|+.+|||+|++.+|+ .||+|||.|+.. .+.+.++. ...+++.++. +++..||.+|+ ++
T Consensus 94 --~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred --HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 4678999999999999995 599999988631 12233322 2234455554 45678999997 37
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||||++|||||+++|++++||||||+||+.+...+.+.+.+
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~ 211 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG 211 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998643
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-33 Score=316.79 Aligned_cols=175 Identities=26% Similarity=0.421 Sum_probs=138.0
Q ss_pred cEEEEEEEEECCC--CCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC-CEe---CCCCC--
Q 006650 449 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD-- 520 (637)
Q Consensus 449 ~I~f~nVsF~Y~~--~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id-G~d---i~~i~-- 520 (637)
-|+++||+++|++ +.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 112369999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEccCCcccc-ccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHH-----HHHcCCCCcccccCCCCCC
Q 006650 521 -IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHE-----FILSLPCGYETLVDDDLLS 589 (637)
Q Consensus 521 -~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~----~de~v~~A~~~a~l~~-----fI~~lP~G~dT~vge~~LS 589 (637)
...+|++|+||+|++.+|. .|++||+.++..... .++++.++++..++.+ +.++ .+ ..||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-------~~--~~LS 429 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK-------YP--DELS 429 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhC-------Ch--hhCC
Confidence 2346778999999998887 599999986311011 1234445555555432 2221 11 4799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.+.+
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~ 472 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998743
No 296
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.8e-33 Score=283.31 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=124.8
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
+.++|++.+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~- 93 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG- 93 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc-
Confidence 667777888854 3699999999999999999999999999999999999999999999999986421 1111
Q ss_pred EEccCCccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~-~~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
.+..+.|++||+.++.. ...+.+ ++.++++..++.+.. ++.+ ..||||||||++||||+++
T Consensus 94 -----~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 94 -----GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DLPV--KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -----cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------hCCh--hhCCHHHHHHHHHHHHHhc
Confidence 12246899999987621 112222 334444444444333 3333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|+++||||||++||+++.+.+.+.+.+
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~ 187 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRE 187 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998644
No 297
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=316.75 Aligned_cols=171 Identities=16% Similarity=0.291 Sum_probs=135.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~ 527 (637)
-|+++||++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 28999999999999999999999999999999999999999999999999876554 456789
Q ss_pred eEEEccCC---cccc-ccHHHHHhcCCCC---------C-CCHHHHHHHHHHcCHHHHHHcC--C-CCcccccCCCCCCh
Q 006650 528 IGFVGQEP---QLLQ-MDIKSNIMYGCPK---------D-VKNEDIEWAAKQAYVHEFILSL--P-CGYETLVDDDLLSG 590 (637)
Q Consensus 528 I~~V~Qd~---~LF~-gTI~eNI~~g~~~---------~-~~de~v~~A~~~a~l~~fI~~l--P-~G~dT~vge~~LSG 590 (637)
|+||+|++ .+|. -|++||+.++... . .+.++. ...+++.++.+ + +-.++.+ ..|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~--~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELLALKCHSVNQNI--TELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhcCCCCCCccCcc--ccCCh
Confidence 99999984 5775 5999999876210 0 011111 11223344433 1 1122222 37999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||||++|||||+++|++||||||||+||+.+...+.+.|.
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 453 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999753
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.5e-33 Score=315.98 Aligned_cols=171 Identities=27% Similarity=0.424 Sum_probs=137.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEC---------------
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID--------------- 512 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~G~I~id--------------- 512 (637)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhcceEEEccC-Ccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcC
Q 006650 513 --------GFPLT-------DLD---IRWLREKIGFVGQE-PQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAY 567 (637)
Q Consensus 513 --------G~di~-------~i~---~~~lR~~I~~V~Qd-~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~ 567 (637)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ...+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 13567889999998 67776 599999987411 1122 245666677777
Q ss_pred HHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 568 l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.++.++.| ..||||||||++|||||+++|++||||||||+||+++.+.+.+.+.+
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 665544322 57999999999999999999999999999999999999999987644
No 299
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-33 Score=269.76 Aligned_cols=173 Identities=27% Similarity=0.470 Sum_probs=140.9
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~~I 528 (637)
++++||+-.|.. .++|++|||++++||+++++|++|+||||+++.|+|+.+|.+|+|.++|+|+....++.. |.-|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 789999999964 369999999999999999999999999999999999999999999999999999987754 5569
Q ss_pred EEEccCCccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
+||||.-.+| +-|+.||+.+|.. ...+++- +...+++--+-+|. +...... +.|||||+|-+||||||+.+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~-~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAY-ARRDKEA----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhh-ccccccc----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999 6799999998822 1111111 11112233333341 1222222 48999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++|+|||||.+|-|.-.+.|.+.|.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHH
Confidence 99999999999999999999998863
No 300
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.4e-33 Score=281.09 Aligned_cols=146 Identities=26% Similarity=0.441 Sum_probs=124.0
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcc---ccccHHHHHhcC
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG 549 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L---F~gTI~eNI~~g 549 (637)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++. ..|++++||+|++.+ |+.|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357889999999987 568999999875
Q ss_pred CC--------C-CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 006650 550 CP--------K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (637)
Q Consensus 550 ~~--------~-~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~ 620 (637)
.. + ...++++.++++..++.++.+..+ ..||||||||++|||||+++|+++||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV---------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 21 0 112356778888888866554322 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006650 621 ESEHYVKANTLD 632 (637)
Q Consensus 621 ~tE~~I~~~il~ 632 (637)
.+...+.+.+.+
T Consensus 147 ~~~~~l~~~l~~ 158 (223)
T TIGR03771 147 PTQELLTELFIE 158 (223)
T ss_pred HHHHHHHHHHHH
Confidence 999999998643
No 301
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.6e-33 Score=313.20 Aligned_cols=179 Identities=22% Similarity=0.372 Sum_probs=138.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCH-HHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDI-RWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~i~~-~~lR~ 526 (637)
-|+++|++++|+++.+..+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++...+. +.+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999532123599999999999999999999999999999999999996 89999999999875443 56788
Q ss_pred ceEEEccCC---cccc-ccHHHHHhcCCCCC------CCHHHHHHHHHHcCHHHHHHcCCCCccc-ccCC--CCCChHHH
Q 006650 527 KIGFVGQEP---QLLQ-MDIKSNIMYGCPKD------VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQK 593 (637)
Q Consensus 527 ~I~~V~Qd~---~LF~-gTI~eNI~~g~~~~------~~de~v~~A~~~a~l~~fI~~lP~G~dT-~vge--~~LSGGQk 593 (637)
+|+||+|++ .+|. .|++||+.++.... ...++. ...+.++++.+ |+.. .... ..||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 3565 69999998862110 111111 11223334433 2221 1111 37999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||++|||||+++|++|||||||++||+.+...+.+.+ +.+.
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~ 450 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI-NQLA 450 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999865 4443
No 302
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=265.04 Aligned_cols=170 Identities=30% Similarity=0.467 Sum_probs=139.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
+..+++|-+|++.+ .++|+|+|++|.+||.++++||||||||||+|+++||.+|..|+|.+||.++.--.- .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56789999998765 469999999999999999999999999999999999999999999999999876542 348
Q ss_pred EEccCCcccc-ccHHHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~de~----v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
+|+|++-|+. .|+.||+.||-. ..+..++ ..+.+..+++.++=.+.+ -.||||||||+.|||||.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARALa 148 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARALA 148 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHHhh
Confidence 9999999996 789999999832 2233322 222334444443311100 289999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
-+|+.|+||||.+|||+-|...+|+.++|--
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw 179 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLW 179 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
No 303
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.3e-33 Score=303.20 Aligned_cols=175 Identities=34% Similarity=0.459 Sum_probs=142.3
Q ss_pred cEEEEEEEEECCCC--------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe--CCC
Q 006650 449 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP--LTD 518 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~--------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d--i~~ 518 (637)
-++++||+.+|..+ ....+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 12458999999999999999999999999999999999999999999999987 332
Q ss_pred CCHHHHhcceEEEccCCccc---cccHHHHHhcCC----CC--CCCHHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCC
Q 006650 519 LDIRWLREKIGFVGQEPQLL---QMDIKSNIMYGC----PK--DVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL 588 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF---~gTI~eNI~~g~----~~--~~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~L 588 (637)
=....+|+++=+|+|||+=. ..||.++|.-.. .. ....+.+.+.++.+++.+ +..+-| ..|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 23456888999999999854 689999996321 10 111234666677777664 344433 479
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 589 SGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||||+||||||..+|++||+||||||||+-+.+.|.+.+.+
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997644
No 304
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-33 Score=281.60 Aligned_cols=175 Identities=37% Similarity=0.537 Sum_probs=152.7
Q ss_pred cEEEEEEEEECCCCCC---------------------cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 006650 449 HVQFVNISFHYPSRPT---------------------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~---------------------~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G 507 (637)
.|+++||+.-|..+++ .--++|+||+|+.||+..|.|-||||||||++++-|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5888888887743211 1137899999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCCHHHHh----cceEEEccCCccc-cccHHHHHhcCCC-CCC----CHHHHHHHHHHcCHHHHHHcCCC
Q 006650 508 QIYIDGFPLTDLDIRWLR----EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPC 577 (637)
Q Consensus 508 ~I~idG~di~~i~~~~lR----~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~~~----~de~v~~A~~~a~l~~fI~~lP~ 577 (637)
+|++||.|+..++.++|| +++++|+|..-|| +.||.||..||-. ... -++...++++.+|+++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988764 5699999999999 7999999999832 112 2456678999999999988877
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 578 G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.||||+|||+.|||||..||+||++|||.|||||--....|+.+++
T Consensus 163 --------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~ 209 (386)
T COG4175 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209 (386)
T ss_pred --------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999998765
No 305
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-33 Score=262.94 Aligned_cols=169 Identities=30% Similarity=0.491 Sum_probs=143.2
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
+++.+++-+|++- ..+++||||+++.||++||.||+||||||+++.|..|..|++|.|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 6889999999852 458999999999999999999999999999999999999999999999999987 4678999999
Q ss_pred EEccCCccc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
+++-+.-|+ ..|.+|||.|... .+.+ +.++.+.-+.-++.+++++ .+ +++|-|+|||++|||||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-------Rv--~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-------RV--GEFSTGMKQKVAIARALV 149 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-------HH--hhhchhhHHHHHHHHHHh
Confidence 999888887 6799999988511 1222 3345555555566555543 22 379999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
+||+++|||||||+||--+-+++++-+
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi 176 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFI 176 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHH
Confidence 999999999999999999999998865
No 306
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.8e-33 Score=284.53 Aligned_cols=167 Identities=24% Similarity=0.259 Sum_probs=130.8
Q ss_pred EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCEeCCCCCH
Q 006650 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 521 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~-----------idG~di~~i~~ 521 (637)
.||+|+|++. ..+|+|+|+ +++||++||+|+||||||||+++|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4799999643 359999994 999999999999999999999999999999999996 88999877654
Q ss_pred HHHhc--ceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 522 RWLRE--KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 522 ~~lR~--~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
+..|. .+++++|++.++..++.+|+.......-.++++.++++..++.+..++.+ ..||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI---------DQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 44443 47888887777765555555432111112355666777766554433211 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||++++|+++||||||++||+++...+.+.+.
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~ 183 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIR 183 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988753
No 307
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-32 Score=279.25 Aligned_cols=153 Identities=26% Similarity=0.343 Sum_probs=125.9
Q ss_pred EECCCCCCcCcccceeEEee-----CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEE
Q 006650 457 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (637)
Q Consensus 457 F~Y~~~~~~~vL~~isl~I~-----~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (637)
|+||+. ...++|++|+++ +||++||+|+||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 689854 358999999997 68999999999999999999999999999999999984 69999
Q ss_pred ccCCc-cccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 006650 532 GQEPQ-LLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (637)
Q Consensus 532 ~Qd~~-LF~gTI~eNI~~g~~~~-~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~IL 609 (637)
+|++. .|+.|++||+.+..... ...+...++++..++.+...+.+ ..||||||||++|||||+++|+++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99997 57899999997652111 11233455666666654433211 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Q 006650 610 LLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||++||+++...+.+.|.+
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999987644
No 308
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-32 Score=336.74 Aligned_cols=173 Identities=25% Similarity=0.393 Sum_probs=144.7
Q ss_pred cEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHH
Q 006650 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~i~~~~l 524 (637)
.++++||+++|+.++ +..+|+|||++|+|||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3469999999999999999999999999999999999998 78999999999985 257
Q ss_pred hcceEEEccCC-ccccccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 525 REKIGFVGQEP-QLLQMDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 525 R~~I~~V~Qd~-~LF~gTI~eNI~~g~----~~~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
|+.+|||+|++ +++..|++||+.++. +.+.+++ ++.++++..++. +-.|+.+|+ .+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 89999999986 466789999999751 1123333 345566665554 346888886 38999999
Q ss_pred HHHHHHHHHcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~-ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|+ ||+||||||+||+.+...|++.+.+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999997 9999999999999999999998643
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=276.46 Aligned_cols=142 Identities=33% Similarity=0.511 Sum_probs=124.8
Q ss_pred cEEEEEEEEECCCCCC------cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH
Q 006650 449 HVQFVNISFHYPSRPT------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~------~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~ 522 (637)
-++.+|++..|+.+.. ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3789999999975321 35899999999999999999999999999999999999999999999999988877
Q ss_pred HHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
. +.-.+++.+.++.+++.+ +..+.| ..|||||||||+||||
T Consensus 82 --------------------------~---~~~~~~v~elL~~Vgl~~~~~~ryP---------helSGGQrQRi~IARA 123 (268)
T COG4608 82 --------------------------K---EERRERVLELLEKVGLPEEFLYRYP---------HELSGGQRQRIGIARA 123 (268)
T ss_pred --------------------------h---hHHHHHHHHHHHHhCCCHHHhhcCC---------cccCchhhhhHHHHHH
Confidence 1 223577999999999866 555554 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|.-||+++|+||||||||.-..++|...+
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL 152 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLL 152 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHH
Confidence 99999999999999999999999999865
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.98 E-value=3.7e-32 Score=335.19 Aligned_cols=174 Identities=22% Similarity=0.378 Sum_probs=146.5
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|+++||+++|+++ +..+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|+|+.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 2469999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
|||+||++.+|+ .|++|||.++.. ...+ ++++.+.++..++.+..++.+ +.||||||||++||||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA---------QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999996 599999987421 1122 234556666666554433221 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+.+|++||||||||+||+.+.+.+.+.+.+
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999997644
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=2.8e-32 Score=309.41 Aligned_cols=167 Identities=26% Similarity=0.410 Sum_probs=130.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|+++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999722 3699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCccccc-cHHHHHhcCCCC---------------CCC----------HHHHHHHHHHcC-------HHHHHHcC
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCPK---------------DVK----------NEDIEWAAKQAY-------VHEFILSL 575 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~~---------------~~~----------de~v~~A~~~a~-------l~~fI~~l 575 (637)
|||+|++.+|+. |++||+.++... ... .+++.++++.++ +.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999965 999999875110 000 011222222211 22233332
Q ss_pred CCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 576 PCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 576 P~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++ .... ..||||||||++|||||+.+|++||||||||+||+++...+.+.+.
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~ 207 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH 207 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH
Confidence 232 1121 3799999999999999999999999999999999999999888653
No 312
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.98 E-value=6.7e-32 Score=295.70 Aligned_cols=162 Identities=26% Similarity=0.321 Sum_probs=131.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.++++|++|+|+++...++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999865434699999999999999999999999999999999999999999999999762
Q ss_pred EEEccCCccc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
++.+.+.++ ..|++|||.++.. ...+++ ++.++++.+++++++++.| ..||||||||++|||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 122333343 3599999987421 122333 3445677777777665533 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.+|++|||||||++||+.+...+.+.+.+
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999987643
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.5e-32 Score=304.54 Aligned_cols=160 Identities=22% Similarity=0.371 Sum_probs=135.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| ++.|
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 5999999999964 2599999999999999999999999999999999999999999999988 2579
Q ss_pred EEEccCCc--cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 529 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 529 ~~V~Qd~~--LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
|||+|++. ++ +.|++||+.+.......++++.++++..++. +..++.| ..||||||||++|||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSV---------KVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcc---------cccCHHHHHHHHHHHHHhc
Confidence 99999974 44 3699999975311223456677788887762 3333222 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|++|||||||++||+.+...+.+.+.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~ 482 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALE 482 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.98 E-value=7e-32 Score=253.13 Aligned_cols=114 Identities=37% Similarity=0.616 Sum_probs=107.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++++||+++|++. ++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 5799999999742 5999999999999999999999999999999999999999999999994 5899
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~IL 609 (637)
|++| |||||+||++|||||+++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH
Q 006650 610 LLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il 631 (637)
||||||++||+++...+.+.+.
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 315
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=9.3e-32 Score=257.58 Aligned_cols=170 Identities=27% Similarity=0.408 Sum_probs=148.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+.+|+|++-.++ .+|+++||+++|||++||+||+|+|||||+|.|+|...|++|++.+||+++.+....++-++-+
T Consensus 2 i~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 7889999999765 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcc-ccccHHHHHhcCCCCC-----CCHHH--HHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 530 FVGQEPQL-LQMDIKSNIMYGCPKD-----VKNED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 530 ~V~Qd~~L-F~gTI~eNI~~g~~~~-----~~de~--v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+.||+..| |.-|++|=+.+|+-+. ..+++ ..+|+.++++..|-.+. | ..|||||+||+.+||.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~---y------~~LSGGEqQRVqlARv 149 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD---Y------RTLSGGEQQRVQLARV 149 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc---h------hhcCchHHHHHHHHHH
Confidence 99999996 9999999999995433 22344 56788888887775431 1 3799999999999999
Q ss_pred HcCC------CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 602 ILRD------PAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 602 Llk~------p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|..- +++|+|||||||||..-...+++...
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 9743 45899999999999998888877643
No 316
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=3.1e-32 Score=305.62 Aligned_cols=169 Identities=26% Similarity=0.457 Sum_probs=134.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~ 527 (637)
-|+++||++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 589999984 27999999999999999999999999999999999999999999999999987765 356788
Q ss_pred eEEEccCC---ccc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHcCCCCcc-cccCC--CCCChHHH
Q 006650 528 IGFVGQEP---QLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQK 593 (637)
Q Consensus 528 I~~V~Qd~---~LF-~gTI~eNI~~g~~~~-------~~de~v~~A~~~a~l~~fI~~lP~G~d-T~vge--~~LSGGQk 593 (637)
||||+|++ .+| +.|++||+.++.... .+.++. ...+.++++.+ |++ -.... ..||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 344 579999998752100 111111 11233444443 332 12222 37999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+.+|++|||||||++||+.+.+.+.+.+.+
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999997644
No 317
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=3.3e-32 Score=304.74 Aligned_cols=172 Identities=23% Similarity=0.269 Sum_probs=136.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCC-CCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~-i~~~~lR~ 526 (637)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .....+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999964 2599999999999999999999999999999999999876 79999999987632 23345788
Q ss_pred ceEEEccCCcccc---ccHHHHHhcCCC------CCCC---HHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHH
Q 006650 527 KIGFVGQEPQLLQ---MDIKSNIMYGCP------KDVK---NEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 593 (637)
Q Consensus 527 ~I~~V~Qd~~LF~---gTI~eNI~~g~~------~~~~---de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQk 593 (637)
+|+||+|++.++. .|+.+|+.++.. .... ++++.++++..++.+ ..++-| ..||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF---------HSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch---------hhCCHHHH
Confidence 9999999987653 467777654310 0111 234555666665543 222211 47999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++|||||||++||+++...+.+.+.+
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 446 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDV 446 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997643
No 318
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=9.5e-32 Score=304.97 Aligned_cols=168 Identities=26% Similarity=0.429 Sum_probs=134.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|+++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 38999999999722 3699999999999999999999999999999999999999999999975 2579
Q ss_pred EEEccCCcccc-ccHHHHHhcCCCC----------------CCC---------HHHHHHHHHHcCHH-------HHHHcC
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCPK----------------DVK---------NEDIEWAAKQAYVH-------EFILSL 575 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~~----------------~~~---------de~v~~A~~~a~l~-------~fI~~l 575 (637)
|||+|++.+|+ .|++|||.++... ... .+++.++++.++.+ +.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 5999999875210 001 12355555555543 233332
Q ss_pred CCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 576 PCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 576 P~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++- ... ..||||||||++|||||+.+|++|||||||++||+++...+.+.+.+
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence 2321 122 37999999999999999999999999999999999999999887543
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.9e-32 Score=304.86 Aligned_cols=166 Identities=25% Similarity=0.462 Sum_probs=129.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 36999999999999999999999999999999999999999999999972 4699
Q ss_pred EEccCCcccc-ccHHHHHhcCCCC---------------CCCHHH---HHHH----------HHHcCHHHHHHcCCCCcc
Q 006650 530 FVGQEPQLLQ-MDIKSNIMYGCPK---------------DVKNED---IEWA----------AKQAYVHEFILSLPCGYE 580 (637)
Q Consensus 530 ~V~Qd~~LF~-gTI~eNI~~g~~~---------------~~~de~---v~~A----------~~~a~l~~fI~~lP~G~d 580 (637)
||+|++.+|. .|++||+.++..+ ....++ +.+. -....+++.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998885 5999999875210 000000 0000 0011233344443 333
Q ss_pred cccC-C--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 581 TLVD-D--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 581 T~vg-e--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.... . ..||||||||++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 199 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN 199 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 2221 1 4799999999999999999999999999999999999999988764
No 320
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.6e-31 Score=289.92 Aligned_cols=176 Identities=32% Similarity=0.439 Sum_probs=145.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH-HHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~-~lR~~ 527 (637)
-++++|++.+|++ .++|+|+||++.|||+.|++|++|||||||+|.|+|.|+|++|+|++||++..-.++. ....-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999985 4699999999999999999999999999999999999999999999999999877766 45555
Q ss_pred eEEEccCCccc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHcCC--CCcccccCCCCCChHHHHHHHHH
Q 006650 528 IGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLP--CGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 528 I~~V~Qd~~LF-~gTI~eNI~~g~~~~-----~~de~v~~A~~~a~l~~fI~~lP--~G~dT~vge~~LSGGQkQRIaIA 599 (637)
|+.|.||..|+ +-||.|||.+|+.+. .+..++++.++.+ +.++- ...++.|+ +||+||||-++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~~~~~v~--~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDIDPDTLVG--DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCChhhhhh--hCCHHHHHHHHHH
Confidence 99999999999 789999999995432 3445665544432 33221 12444443 6999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
|||.++++|||||||||+|+....+.+.+.+ ..|.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~i-r~Lk 192 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLI-RRLK 192 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHH
Confidence 9999999999999999999998887777754 4444
No 321
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7e-33 Score=263.05 Aligned_cols=181 Identities=27% Similarity=0.479 Sum_probs=146.9
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 526 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~ 526 (637)
+.+..+|+..+|..+ +|.+|+||++++||+|++.||+|+||||....+.|+..|++|+|.+||.|++.++.+.. |-
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357889999999754 69999999999999999999999999999999999999999999999999999997754 34
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALl 603 (637)
-|||.|||+.+|. -|+.|||..-- +..+.+...+.++..+++.++++. +...-.. ..||||||.|+-|||||.
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vl--E~~~~d~~~~~~~~~l~~LL~ef~--i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVL--EIREKDLKKAERKEELDALLEEFH--ITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHH--hhhhcchhHHHHHHHHHHHHHHhc--hHHHhcCcccccccchHHHHHHHHHHh
Confidence 4999999999995 59999998652 222223333444444555555432 2222222 389999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
.||+.++||||.+++||.+-..||+.+ ..|.+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI-~~L~~ 187 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRII-KHLKD 187 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHH-HHHHh
Confidence 999999999999999999999999864 55544
No 322
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=276.16 Aligned_cols=162 Identities=24% Similarity=0.334 Sum_probs=128.2
Q ss_pred cEEEEEEEEECCCC-----------------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 449 HVQFVNISFHYPSR-----------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~-----------------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
+|+++||+..|... ...++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57777777666431 1235899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCccc-cccHHHHHhcCCC-CCCCHHHHH----HHHHHcCHHHHHHcCCCCcccccCC
Q 006650 512 DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDD 585 (637)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~de~v~----~A~~~a~l~~fI~~lP~G~dT~vge 585 (637)
||. +++++|++.++ ..|++||++++.. ...+.++.. ++++..+++++++.. -
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~ 141 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP---------V 141 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------c
Confidence 994 46778888766 4699999986411 123344443 344555555444321 1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.||||||||++||||++++|++|||||||++||+++.+.+.+.+.+
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~ 188 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE 188 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999987643
No 323
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.1e-32 Score=270.14 Aligned_cols=157 Identities=29% Similarity=0.504 Sum_probs=143.1
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC----CCCHHHHhcceEEEccCCccc-cccHH
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT----DLDIRWLREKIGFVGQEPQLL-QMDIK 543 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~----~i~~~~lR~~I~~V~Qd~~LF-~gTI~ 543 (637)
=++||+.+.-.++||-|+||||||||+|++.|+..|++|+|.+||.-+. .+...--+++||||+||.-|| +-|++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3789999888999999999999999999999999999999999998664 455566789999999999999 78999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
-|++||. ...+.+++.+++...|+....++.| ..||||||||+||+|||+.+|++|++|||.|+||-...
T Consensus 95 gNL~YG~-~~~~~~~fd~iv~lLGI~hLL~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 95 GNLRYGM-WKSMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred cchhhhh-cccchHhHHHHHHHhCcHHHHhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999994 4667889999999999999999988 67999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 006650 624 HYVKANTLDSLLQ 636 (637)
Q Consensus 624 ~~I~~~il~~l~~ 636 (637)
++|+.. +++|.+
T Consensus 165 ~Eilpy-lERL~~ 176 (352)
T COG4148 165 REILPY-LERLRD 176 (352)
T ss_pred hHHHHH-HHHHHH
Confidence 999986 476654
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.5e-32 Score=303.62 Aligned_cols=169 Identities=24% Similarity=0.382 Sum_probs=133.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~ 527 (637)
.++++||+++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+. +..|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5899999842 38999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEccCCc---cc-cccHHHHHhcCCCCCC-------CHHHHHHHHHHcCHHHHHHcCCCCccc-ccCC--CCCChHHH
Q 006650 528 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDV-------KNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQK 593 (637)
Q Consensus 528 I~~V~Qd~~---LF-~gTI~eNI~~g~~~~~-------~de~v~~A~~~a~l~~fI~~lP~G~dT-~vge--~~LSGGQk 593 (637)
|+|++|++. +| ..|+.||+.++..... ...+- ...+++++..+ |++. .... ..||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 5899999987621110 11111 11223344443 2321 1122 38999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||++|||||+.+|++|||||||++||..+...+.+.|.
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 440 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999753
No 325
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.8e-31 Score=329.24 Aligned_cols=174 Identities=18% Similarity=0.381 Sum_probs=147.2
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
.-|+++||+++|+++ +..+|+||||+|++||++||+|+||||||||+|+|+|+.+|++|+|.++|+++.+ +.+..|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999965 45678899
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
|||+||++.++. -|++||+.+... ...++ +.+.++++..++.++.++.+ +.||||||||++||||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999985 699999976311 12222 34455677777766654432 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+.+|+||+|||||++||+++.+.+.+.|.+
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999997643
No 326
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=1.7e-31 Score=291.34 Aligned_cols=177 Identities=29% Similarity=0.409 Sum_probs=141.4
Q ss_pred cEEEEEEEEECCCCCC-cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CceEEECCEeCCCCCHHH
Q 006650 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~----~G~I~idG~di~~i~~~~ 523 (637)
-++++|++..|..... ..+++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 25999999999999999999999999999999999999988 899999999999999876
Q ss_pred Hh----cceEEEccCCc-cccc--cHHHHHh----cCCC--CCCCHHHHHHHHHHcCHHHHHHc--CCCCcccccCCCCC
Q 006650 524 LR----EKIGFVGQEPQ-LLQM--DIKSNIM----YGCP--KDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDDDLL 588 (637)
Q Consensus 524 lR----~~I~~V~Qd~~-LF~g--TI~eNI~----~g~~--~~~~de~v~~A~~~a~l~~fI~~--lP~G~dT~vge~~L 588 (637)
+| +.|++|+|||. .||- ||.+-|+ .... .+...++..+.++++++.+-... .| ..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP---------heL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP---------HQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC---------ccc
Confidence 54 56999999976 6654 5555443 2210 11123455666666666443332 22 589
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 589 SGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
|||||||+.||+||.+||++||+||||.|||+.+.++|.+.| +.+.
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~ll-k~l~ 201 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLL-KDLQ 201 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999986 4443
No 327
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=7.1e-32 Score=251.71 Aligned_cols=169 Identities=36% Similarity=0.492 Sum_probs=139.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC---------
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 519 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i--------- 519 (637)
.++.+|+.-+|... .||++|||+.++|++++|+|.|||||||+++++-=+-.|+.|+|.++|..++--
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 68999999999743 499999999999999999999999999999999999999999999999876422
Q ss_pred -C---HHHHhcceEEEccCCccc-cccHHHHHhcCCCCC---CC-HH---HHHHHHHHcCHHHHHHcCCCCcccccCCCC
Q 006650 520 -D---IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD---VK-NE---DIEWAAKQAYVHEFILSLPCGYETLVDDDL 587 (637)
Q Consensus 520 -~---~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~---~~-de---~v~~A~~~a~l~~fI~~lP~G~dT~vge~~ 587 (637)
| .+-+|.+.|+|+|...|+ +.|+.||+.=+ |-. .+ +| +-+.-+.++|+.|--+.-| ..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~ 152 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AH 152 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------cc
Confidence 2 356889999999999999 78999998643 311 12 22 2333455666655544433 47
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|||||+||.||||||.-+|+++++||||||||+|---.|...+
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~ 195 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVM 195 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887764
No 328
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.2e-31 Score=244.33 Aligned_cols=172 Identities=31% Similarity=0.479 Sum_probs=144.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE--eCCCCC----HH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLD----IR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~--di~~i~----~~ 522 (637)
+|+++|++|.|... .+|-||+|+.+.||++.+.||||+|||||++.|-=+--|.+|+..|-|. |.++-. ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58999999999753 5999999999999999999999999999999999999999999999875 333322 45
Q ss_pred HHhcceEEEccCCccc-cccHHHHHhcCCCC---CCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 523 WLREKIGFVGQEPQLL-QMDIKSNIMYGCPK---DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~---~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
.+|+.+|+|+|+.+|+ +-|+.||+-=+ |- ..++ .+-.+.++...+.+|-++.| -.|||||.|
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p---------lhlsggqqq 148 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP---------LHLSGGQQQ 148 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCc---------eecccchhh
Confidence 8999999999999999 68999999643 21 1222 23445566677777777766 469999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|+||||||..+|++|++||||+|||+|-.++|.+.| ++|
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~ii-kel 187 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII-KEL 187 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999998864 554
No 329
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.7e-31 Score=248.77 Aligned_cols=125 Identities=46% Similarity=0.742 Sum_probs=118.3
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
+++|++|+|++. ++++|+||+|++|++++|+|+||||||||+++|.|+++|++|+|.+||.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 378999999753 59999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 006650 531 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (637)
Q Consensus 531 V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILI 610 (637)
++| ||||||||++||||++.+|+++|
T Consensus 78 ~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 78 VPQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred Eee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH
Q 006650 611 LDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++||.++...+.+.+.+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 330
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-31 Score=297.03 Aligned_cols=174 Identities=25% Similarity=0.365 Sum_probs=133.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH-HHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~-~lR~~ 527 (637)
-|+++||+++| + ++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999985 1 499999999999999999999999999999999999999999999999999877654 45778
Q ss_pred eEEEccCCc---ccc-ccHHHH-----HhcCCCC-C-CCHHHHHHHHHHcCHHHHHHcCCCCccc-ccCC--CCCChHHH
Q 006650 528 IGFVGQEPQ---LLQ-MDIKSN-----IMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQK 593 (637)
Q Consensus 528 I~~V~Qd~~---LF~-gTI~eN-----I~~g~~~-~-~~de~v~~A~~~a~l~~fI~~lP~G~dT-~vge--~~LSGGQk 593 (637)
++|++|++. +|. .|+.+| +.+.... . .+.++..+ .+.+++..+ |+.. .... ..||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 565 567666 4322110 1 11122211 223344443 2211 1222 37999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||++||||++++|+||||||||++||+.+...|.+.+ +.+.
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l-~~l~ 438 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI-AELA 438 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999875 4443
No 331
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.5e-31 Score=239.74 Aligned_cols=173 Identities=27% Similarity=0.456 Sum_probs=152.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHh
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~i~~~~lR 525 (637)
.+.++||+.+-|++ -.|.|+||+|.|||++-|.||||||||||+.-+.|+.+++ +|++++|+++++.+... |
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 46789999998865 4899999999999999999999999999999999999985 89999999999988744 7
Q ss_pred cceEEEccCCccc-cccHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 526 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 526 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
++||+.+||+.|| +-++-+||.|.-+++.. ......|++..+++++..+.| ..||||||-|+|+-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHH
Confidence 8999999999999 57899999998655443 344566888888888888876 469999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
+|+..|+.|+||||.|.||..-..+..+-.++++.
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r 182 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR 182 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888887777664
No 332
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=5e-31 Score=269.66 Aligned_cols=176 Identities=30% Similarity=0.430 Sum_probs=137.8
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-C----CCceEEECCEeCCCCCHHH
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p----~~G~I~idG~di~~i~~~~ 523 (637)
++++|++.+|+... ...+++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2468999999999999999999999999999999999998 4 6799999999999999875
Q ss_pred Hh----cceEEEccCCcc-cc------ccHHHHHhcCCCC---CCCHHHHHHHHHHcCHHH---HHHcCCCCcccccCCC
Q 006650 524 LR----EKIGFVGQEPQL-LQ------MDIKSNIMYGCPK---DVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 586 (637)
Q Consensus 524 lR----~~I~~V~Qd~~L-F~------gTI~eNI~~g~~~---~~~de~v~~A~~~a~l~~---fI~~lP~G~dT~vge~ 586 (637)
+| +.|++|+|||.- || .-|.|=+..-... ..-.++..++++.+++.+ -+++-| .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------h 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC---------c
Confidence 43 369999999752 11 2233333321000 001345667777777654 233333 5
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
.||||||||+.||-||..+|++||-||||+|||..+.++|.+. ++.+.
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~L-l~~l~ 200 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDL-LKELQ 200 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHH-HHHHH
Confidence 8999999999999999999999999999999999999999996 45554
No 333
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.2e-30 Score=296.09 Aligned_cols=161 Identities=24% Similarity=0.375 Sum_probs=129.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|+++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 59999999999643 599999999999999999999999999999999999999999999965 21 69
Q ss_pred EEEccCC-cccc-ccHHHHHhcCCCC-C--CCHHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEP-QLLQ-MDIKSNIMYGCPK-D--VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~-~LF~-gTI~eNI~~g~~~-~--~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++ .++. .|++||+.++... . ..+++..++++..++.+ .. +..+ ..||||||||++|||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~--~~LSgG~~qrv~la~al 460 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQ-------QKKV--GVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHh-------cCch--hhCCHHHHHHHHHHHHH
Confidence 9999997 5654 5999999876211 1 11233344444444421 11 1111 37999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.+|++|||||||++||+.+...+.+.|.+
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 490 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLE 490 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999987643
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.2e-30 Score=295.94 Aligned_cols=162 Identities=22% Similarity=0.351 Sum_probs=129.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|+++ ++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 59999999999643 599999999999999999999999999999999999999999999965 21 69
Q ss_pred EEEccCC-ccc-cccHHHHHhcCCCC-CCC--HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 529 GFVGQEP-QLL-QMDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 529 ~~V~Qd~-~LF-~gTI~eNI~~g~~~-~~~--de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
|||+|++ .++ +.|++||+.++... ... +++..++++..++.+.. .+..+ ..||||||||++|||||+
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~--~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQKKV--GQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcCch--hhCCHHHHHHHHHHHHHh
Confidence 9999997 355 46999999986321 111 22333344444432110 11111 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.+|++|||||||++||+.+...+.+.|.+
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 488 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLE 488 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987643
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=7.1e-31 Score=262.35 Aligned_cols=147 Identities=21% Similarity=0.251 Sum_probs=117.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-ECCEeCCCCCHHHHhcceEEEccCCccccc-cHHH
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKS 544 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~-idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~e 544 (637)
+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 787543 14467888875 9999
Q ss_pred HHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 545 NIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 545 NI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
||.+... ...+.++..+.+.. ...+++.+++.+ +.||||||||++||||++++|+++||||||+++|+.+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~--~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQ------LTQLEQCYTDRV--SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------HhChhHHhhchH--hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 9987521 12344444333211 123444445444 35999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 006650 624 HYVKANTLDSL 634 (637)
Q Consensus 624 ~~I~~~il~~l 634 (637)
..+.+.+.+.+
T Consensus 141 ~~~~~~l~~~~ 151 (213)
T PRK15177 141 LRMQAALACQL 151 (213)
T ss_pred HHHHHHHHHHh
Confidence 99998876554
No 336
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=4.9e-31 Score=296.41 Aligned_cols=168 Identities=18% Similarity=0.329 Sum_probs=131.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~ 527 (637)
-|+++|++. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 499999983 1699999999999999999999999999999999999999999999999998777654 4678
Q ss_pred eEEEccCC---cccc-ccHHHHHhcCC---CCC-CCHHHHHHHHHHcCHHHHHHcCCCCcc-cccCC--CCCChHHHHHH
Q 006650 528 IGFVGQEP---QLLQ-MDIKSNIMYGC---PKD-VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQKQRI 596 (637)
Q Consensus 528 I~~V~Qd~---~LF~-gTI~eNI~~g~---~~~-~~de~v~~A~~~a~l~~fI~~lP~G~d-T~vge--~~LSGGQkQRI 596 (637)
|+||+|++ .+|. .|+.||+.... ... ...++.+ ..+.+++..+ |++ ..... ..||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999985 3665 59999985320 000 0111111 1233444443 232 12222 47999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|||||+.+|++|||||||++||+.+.+.+.+.+.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~ 447 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR 447 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHH
Confidence 99999999999999999999999999999999753
No 337
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.4e-31 Score=260.35 Aligned_cols=170 Identities=26% Similarity=0.383 Sum_probs=140.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh-cce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR-~~I 528 (637)
++.+|++-+|.+ -.+++||||++++||++||+||+||||||++|+|.|+|+|++|+|.++|+|+...+++... .-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999975 3599999999999999999999999999999999999999999999999999999987654 449
Q ss_pred EEEccCCccc-cccHHHHHhcCCC-----------------CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCCh
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGCP-----------------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 590 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~~-----------------~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSG 590 (637)
+--+|.+.+| +.|+.||+..|.. +....|+-.+.++.+++.+.-+. . .++||+
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-------~--A~~Lsy 152 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-------P--AGNLSY 152 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-------h--hhcCCh
Confidence 9999999999 6799999998721 01112233334444444433222 1 148999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||+.|+-|||||..+|++|+||||.++|.++....+.+.|.
T Consensus 153 G~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~ 193 (250)
T COG0411 153 GQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIR 193 (250)
T ss_pred hHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888763
No 338
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.8e-30 Score=318.45 Aligned_cols=174 Identities=23% Similarity=0.415 Sum_probs=144.5
Q ss_pred cEEEEEEEEECCCC----------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeC
Q 006650 449 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPL 516 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~----------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di 516 (637)
.++|+||++.++.. .+..+|+|||++++||+.+||+||||||||||+++|+|..++ .+|+|.+||++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999998521 123699999999999999999999999999999999999874 789999999886
Q ss_pred CCCCHHHHhcceEEEccCCcccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHcCCCCcccccCC--
Q 006650 517 TDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDD-- 585 (637)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~----~~~~~de----~v~~A~~~a~l~~fI~~lP~G~dT~vge-- 585 (637)
+ ...+|+.+|||+|++.++. .|++|||.++. +.+.+++ .+.++++..++.+. .|+.+|.
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 3567888999999987765 69999998741 1233333 35667777766543 4777774
Q ss_pred -CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 586 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 586 -~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.||||||||++|||||+.+|++|+||||||+||+.+...|.+.+.+
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999998643
No 339
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=267.14 Aligned_cols=178 Identities=32% Similarity=0.440 Sum_probs=144.5
Q ss_pred CcEEEEEEEEECCCCCC--------cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 448 GHVQFVNISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~--------~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
.-++.+||...||-+.. ..+.++|||++++||+++|||+|||||||+-..|+|+.+++ |+|.++|+|+..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 35899999999974321 23789999999999999999999999999999999999887 9999999999999
Q ss_pred CHH---HHhcceEEEccCCcc--c-cccHHHHHhcCC---CCCCC----HHHHHHHHHHcCHHHHHHc-CCCCcccccCC
Q 006650 520 DIR---WLREKIGFVGQEPQL--L-QMDIKSNIMYGC---PKDVK----NEDIEWAAKQAYVHEFILS-LPCGYETLVDD 585 (637)
Q Consensus 520 ~~~---~lR~~I~~V~Qd~~L--F-~gTI~eNI~~g~---~~~~~----de~v~~A~~~a~l~~fI~~-lP~G~dT~vge 585 (637)
+.+ -+|+++-+|+||||= = ..||.+=|.=|- .+..+ ++++.+|++.+|++.-... -|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 866 478899999999972 2 456666665431 12333 4567778888887654432 22
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
..+|||||||||||||++-+|++++|||||||||..-.++|.+. +..|-+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L-Lr~LQ~ 474 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL-LRDLQQ 474 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH-HHHHHH
Confidence 47999999999999999999999999999999999999999986 455543
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.8e-30 Score=294.70 Aligned_cols=157 Identities=26% Similarity=0.301 Sum_probs=133.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4999999999963 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCcc-ccccHHHHHhcCCCCCC-CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 529 GFVGQEPQL-LQMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 529 ~~V~Qd~~L-F~gTI~eNI~~g~~~~~-~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
+|+||++.+ ++.|++||+.++. ... .++.+.++++..++.+..++.| ..||||||||++|||||+++|
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCC
Confidence 999999875 5789999998862 222 2345566777777766544322 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||||++||.++...+.+.|.+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRR 498 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998644
No 341
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=1e-30 Score=277.26 Aligned_cols=139 Identities=34% Similarity=0.501 Sum_probs=118.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc-cHHHHHhcCCC-CCCC----H
Q 006650 483 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----N 556 (637)
Q Consensus 483 IVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----d 556 (637)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+||+|++.+|.. |++||+.++.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987764 47889999999999964 99999998621 1122 2
Q ss_pred HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 557 e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++.++++..++.++.++.| ..||||||||++|||||+++|++||||||||+||+++...+.+.+.+
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 45667777777766655543 47999999999999999999999999999999999999999988654
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3.4e-30 Score=296.43 Aligned_cols=159 Identities=23% Similarity=0.403 Sum_probs=128.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4999999999964 25999999999999999999999999999999999999999999999 4332 69
Q ss_pred EEEccCC-cccc-ccHHHHHhcCCCCCC--C--HHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 529 GFVGQEP-QLLQ-MDIKSNIMYGCPKDV--K--NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~-~LF~-gTI~eNI~~g~~~~~--~--de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
||++|++ .++. .|+.||+.++.. .. + ++++.+.++..++. +. .++.+ +.||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~--~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHPKR-------AMTPV--KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCHHH-------HhChh--hhCCHHHHHHHHHHHH
Confidence 9999986 4654 499999987632 11 1 23344444444331 11 12222 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|+++|++|||||||++||..+...+.+.+.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 484 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLD 484 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988888653
No 343
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.4e-30 Score=250.30 Aligned_cols=114 Identities=31% Similarity=0.376 Sum_probs=104.3
Q ss_pred EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEc
Q 006650 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~ 532 (637)
.||+++|++ ..+++| +|++++||++||+||||||||||+++|+|+++|++|+|.+||.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 689999964 358988 49999999999999999999999999999999999999999963 78999
Q ss_pred cCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 006650 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612 (637)
Q Consensus 533 Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILD 612 (637)
|++. ||||||||++||||++.+|++++||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8753 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q 006650 613 EATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 613 EaTSaLD~~tE~~I~~~il~~ 633 (637)
|||++||+++.+.+.+.+.+.
T Consensus 97 EPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999986543
No 344
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=2e-26 Score=244.64 Aligned_cols=426 Identities=18% Similarity=0.189 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---hhhcccCh-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDV---YFFDTEAV-GGL---TSRLTADCQRLSNVIGNDINMILRNSLQG 259 (637)
Q Consensus 187 ~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~---~ff~~~~~-G~l---~srl~~D~~~i~~~~~~~l~~l~~~~l~~ 259 (637)
.+++.+.+... ..++.-.+|.++-+|+.++=+ .||.-.+. |.+ =+++++|+....+...+..+++.-.++-+
T Consensus 170 AtFvNS~Iryl-e~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl 248 (728)
T KOG0064|consen 170 ASFVNSAIRYL-ESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDL 248 (728)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34454443332 234455666666666554311 44432221 111 14688888887776666666655555444
Q ss_pred HHHHHHHHHHhHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHH
Q 006650 260 AGAFINLLTLSWPLT--LSALLICSF--LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335 (637)
Q Consensus 260 v~~~i~l~~~sw~l~--lv~l~~~~l--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~ 335 (637)
+..-+.+...+-... .+.++++.+ ...+.+.+.++..++..+.....+.+...-...+.+.++|-.|+..+.|.++
T Consensus 249 ~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~q 328 (728)
T KOG0064|consen 249 ILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQ 328 (728)
T ss_pred HHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHH
Confidence 443333333222111 111111111 1112233333333333333334445556667788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHhCCcC---HH--HHHHHHHHH
Q 006650 336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM-S------------IMIGQVS---PE--QLTKYVLYC 397 (637)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~-l------------v~~g~it---~G--~l~a~~~~~ 397 (637)
.++..+.+...-...-+...++...-.++. =+.+++. + ...|... .| ..-.|+.--
T Consensus 329 l~~sy~~L~~qm~li~k~r~~YiMleqF~m------KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r 402 (728)
T KOG0064|consen 329 VDESYNRLVEQMNLIFKVRLWYIMLEQFVM------KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNR 402 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHH
Confidence 888777665533222222222222222211 1111111 1 1112111 11 122233222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CC---CCCCC------ccccccc-----cCCCcE
Q 006650 398 ---EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL----------LP---SNQFL------SEGVKLQ-----RLMGHV 450 (637)
Q Consensus 398 ---~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~----------~~---~~~~~------~~~~~~~-----~~~~~I 450 (637)
.....++..++..+-++.+..+-..|+++.++. .+ +..+. .++.+.+ .....|
T Consensus 403 ~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI 482 (728)
T KOG0064|consen 403 RLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGI 482 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccce
Confidence 222344455555555566666666777655421 10 10000 0001111 112359
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
.++||-.--|+.+ -+...+||+|++|-.+-|.||+|||||+|.++|.|+++...|...+-- +.+|-|
T Consensus 483 ~lenIpvItP~~~--vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFY 549 (728)
T KOG0064|consen 483 ILENIPVITPAGD--VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFY 549 (728)
T ss_pred EEecCceeccCcc--eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEe
Confidence 9999999888642 478999999999999999999999999999999999999888776532 335999
Q ss_pred EccCCccccccHHHHHhcCC------CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHc
Q 006650 531 VGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 531 V~Qd~~LF~gTI~eNI~~g~------~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALl 603 (637)
+||.||.=-||+||-|-|-+ +.+.+|.|+++.++.++++.. .+-..|.|.+-+= .-||||||||+++||..|
T Consensus 550 IPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da~~dWkd~LsgGekQR~~mARm~y 628 (728)
T KOG0064|consen 550 IPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDAVRDWKDVLSGGEKQRMGMARMFY 628 (728)
T ss_pred ccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence 99999999999999998852 135789999999999999754 4546778877653 489999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
++|+.-+|||+|||+-.+-|..|-++.-+.
T Consensus 629 HrPkyalLDEcTsAvsidvE~~i~~~ak~~ 658 (728)
T KOG0064|consen 629 HRPKYALLDECTSAVSIDVEGKIFQAAKDA 658 (728)
T ss_pred cCcchhhhhhhhcccccchHHHHHHHHHhc
Confidence 999999999999999999999999886543
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=5.4e-30 Score=295.92 Aligned_cols=162 Identities=27% Similarity=0.422 Sum_probs=132.4
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
.-|+++||+|+|+++ .++|+|+||+|++|+++||+||||||||||+++|+|+.+|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 359999999999643 3599999999999999999999999999999999999999999999876 347
Q ss_pred eEEEccCCccccccHHHHHhc--C-CCCCCCHHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 528 IGFVGQEPQLLQMDIKSNIMY--G-CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~--g-~~~~~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
|||++|++. ...++.+|..+ . ..+..+++++.++++..++.+ ...+.| ..||||||||++||||++
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~---------~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM---------YTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCc---------cccCHHHHHHHHHHHHHh
Confidence 999999863 33456666431 1 012345778888888888753 332211 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++|||||||++||.++...+.+.+.+
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999888877543
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-29 Score=292.19 Aligned_cols=160 Identities=23% Similarity=0.321 Sum_probs=131.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999741 279
Q ss_pred EEEccCC--ccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 529 GFVGQEP--QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 529 ~~V~Qd~--~LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
||++|+. .++ ..|+.+|+.-. .+...++++.++++..++. +.... .+ ..||||||||++||||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~-------~~--~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTE-------ET--RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcC-------ch--hhCCHHHHHHHHHHHHHhc
Confidence 9999985 344 34888887522 1233455666666666653 22222 11 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++|||||||++||.++...+.+.|.+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 475 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALID 475 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998643
No 347
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=4e-29 Score=266.05 Aligned_cols=175 Identities=28% Similarity=0.438 Sum_probs=142.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~ 527 (637)
.++++|++.+||+ ..+++||||++++||+-||.|++|+|||||+++|.|+|+|++|+|++||++++=-++ +..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999983 468999999999999999999999999999999999999999999999999876554 578888
Q ss_pred eEEEccCCccc-cccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHH
Q 006650 528 IGFVGQEPQLL-QMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIAR 600 (637)
Q Consensus 528 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIAR 600 (637)
||+|.|+..|+ +-|+.|||.+|.++.. +..+.. ..+.+..++ -|++-.... ..||-||+||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~-----~~i~~l~~~--yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR-----ARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHH-----HHHHHHHHH--hCCCCCccceeecCCcchhHHHHHHH
Confidence 99999999999 5799999999953221 222221 122333333 133333333 379999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|||++|++||||||||-|-+..-....+.+ ++|
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l-~~l 186 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEIL-RRL 186 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHH
Confidence 999999999999999999998888777764 444
No 348
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=247.56 Aligned_cols=168 Identities=29% Similarity=0.443 Sum_probs=136.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~ 527 (637)
-|+|+||+++|.++ ++|+|||.+|+|||.-+|+|++|||||||++++++.+.|++|.+.+-|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~gk---~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECCE---eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 59999999999764 69999999999999999999999999999999999999999999999999988887 999999
Q ss_pred eEEEccCCc---cccccHHHHHh------cCCCC-CCCHHHHHHH---HHHcCHHHHHHcCCCCcccccCC--CCCChHH
Q 006650 528 IGFVGQEPQ---LLQMDIKSNIM------YGCPK-DVKNEDIEWA---AKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (637)
Q Consensus 528 I~~V~Qd~~---LF~gTI~eNI~------~g~~~-~~~de~v~~A---~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQ 592 (637)
||+|+-+-+ .=+.+++|=+. .|... +.++++..+| ++..++.+ ..+. ..||.||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcCHhH
Confidence 999985433 23455665543 12222 4555554433 33333332 2222 3899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|||+-|||||+++|++|||||||++||........+.+
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l 214 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL 214 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 99999999999999999999999999999998877764
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.8e-29 Score=285.93 Aligned_cols=165 Identities=24% Similarity=0.393 Sum_probs=122.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|+++ .+|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.++|.. .|+
T Consensus 2 i~i~nls~~~g~~---~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGVR---VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 7899999999643 59999999999999999999999999999999999999999999999842 488
Q ss_pred EEccCCccccccHHHHHhcCCCCC---CCH-----------HHHHHHH---H-------HcCHHHHHHcCCCCccc-ccC
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKD---VKN-----------EDIEWAA---K-------QAYVHEFILSLPCGYET-LVD 584 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~---~~d-----------e~v~~A~---~-------~a~l~~fI~~lP~G~dT-~vg 584 (637)
|++|++..+..|+.+++.-+ ... .+. ..+.... + ...+.+.+..+ |++. ...
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~ 144 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDG-DREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLE 144 (638)
T ss_pred EEecCCCCCCCCHHHHHHHh-hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhc
Confidence 99997766666776665422 000 000 0000000 0 01122333333 3321 122
Q ss_pred C--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 585 D--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 585 e--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
. ..||||||||++|||||+.+|++|||||||++||.++...+.+.+.
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~ 193 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLK 193 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 2 3799999999999999999999999999999999999988877653
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=3.4e-29 Score=308.02 Aligned_cols=160 Identities=23% Similarity=0.307 Sum_probs=132.3
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEECCEeCCCCCHHHHhcceEEEccCCcccc-
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ- 539 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y----~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~- 539 (637)
..+|+|+|++++|||.+||+||||||||||+|+|+|.. .|.+|+|.+||+++.+.. ..+|+.++||+|+..+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35999999999999999999999999999999999986 579999999999987654 456788999999988886
Q ss_pred ccHHHHHhcCC----CC----CCCHHHHH-----HHHHHcCHHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHHc
Q 006650 540 MDIKSNIMYGC----PK----DVKNEDIE-----WAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 540 gTI~eNI~~g~----~~----~~~de~v~-----~A~~~a~l~~fI~~lP~G~dT~vge---~~LSGGQkQRIaIARALl 603 (637)
-|++||+.++. +. +.+.++.. ++++.. .|.+-.||.||+ +.||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-------GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-------CcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 59999998751 11 12333322 123333 344557899987 489999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.+|++++||||||+||+.+...+.+.+.+
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~ 254 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKT 254 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999997643
No 351
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.2e-29 Score=238.72 Aligned_cols=165 Identities=32% Similarity=0.468 Sum_probs=143.1
Q ss_pred CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcc--c-cc
Q 006650 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL--L-QM 540 (637)
Q Consensus 464 ~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L--F-~g 540 (637)
++++|+++|++|++|+.|-|+|.+|||||||++.|+|-..|++|+|+|||+|+...+.+.--..++=|+|||-. + +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 35799999999999999999999999999999999999999999999999999999999988899999999973 3 67
Q ss_pred cHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 006650 541 DIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 614 (637)
Q Consensus 541 TI~eNI~~g~~~----~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEa 614 (637)
||.||+.++..+ ..+.. ...-+.....+-+..+|.|++-.++.. .|||||||=++++-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 899999986221 12211 112233445667889999999999884 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 006650 615 TSALDSESEHYVKANT 630 (637)
Q Consensus 615 TSaLD~~tE~~I~~~i 630 (637)
|+||||.+...|++.-
T Consensus 176 TAALDPkta~~vm~lT 191 (263)
T COG1101 176 TAALDPKTAEFVMELT 191 (263)
T ss_pred hhcCCcchHHHHHHHH
Confidence 9999999999999864
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=2.3e-29 Score=285.64 Aligned_cols=162 Identities=24% Similarity=0.264 Sum_probs=131.8
Q ss_pred EEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCEeCCCCCHH
Q 006650 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR 522 (637)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~-----------idG~di~~i~~~ 522 (637)
+++++|.+. ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|+++.++..+
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 489999642 35999999 9999999999999999999999999999999999998 999998765322
Q ss_pred H--Hhcc----eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 523 W--LREK----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 523 ~--lR~~----I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
- .+.+ +.+++|.|.+|.+|++||+... + ..+++.++++..++.+..++ .+ ..||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~~~-------~~--~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENILDR-------DI--SELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhhcC-------Ch--hhCCHHHHHHH
Confidence 1 1223 4455667778899999999753 1 24567777777776544322 22 37999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|||||+++|++||||||||+||+++...+.+.|.
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~ 256 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIR 256 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998763
No 353
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.6e-28 Score=279.56 Aligned_cols=178 Identities=33% Similarity=0.468 Sum_probs=147.6
Q ss_pred CCcEEEEEEEEECCCCC--CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEECCEeCCCCCH
Q 006650 447 MGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p---~~G~I~idG~di~~i~~ 521 (637)
..+++|+|++..-++.. .+.+|+|||.+++|||..||.||||||||||++.|+|.-+. .+|+|++||+ ..+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCch
Confidence 34799999999987652 35799999999999999999999999999999999999975 7999999994 4567
Q ss_pred HHHhcceEEEccCCccc-cccHHHHHhcCC----CCCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCC---CCCC
Q 006650 522 RWLREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDD---DLLS 589 (637)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~----~~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge---~~LS 589 (637)
+.+|+.+|||+||..++ +-|++|++.|.. |.+.+. +.|++..+.-++. .+ -||.||. +++|
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLS 172 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccc
Confidence 89999999999999988 679999998751 122233 3444444444443 11 4888985 5899
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||||+|++||--|++||+||+||||||+||+.+..+|.+.+ +++-
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~L-k~lA 217 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLL-KRLA 217 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999999975 5443
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=3.5e-28 Score=279.81 Aligned_cols=164 Identities=29% Similarity=0.449 Sum_probs=119.6
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ ..+|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|. . .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEE
Confidence 889999999974 35999999999999999999999999999999999999999999999873 1 267
Q ss_pred EEccCCcc-ccccHHHHHhcCCC-----------------CCCCHHHHHHHHH-------------HcCHHHHHHcCCCC
Q 006650 530 FVGQEPQL-LQMDIKSNIMYGCP-----------------KDVKNEDIEWAAK-------------QAYVHEFILSLPCG 578 (637)
Q Consensus 530 ~V~Qd~~L-F~gTI~eNI~~g~~-----------------~~~~de~v~~A~~-------------~a~l~~fI~~lP~G 578 (637)
+++|++.. ..+++.+++..+.. .+..++.+....+ ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 77776532 23566666532200 0000111110000 01123333333 2
Q ss_pred cccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 579 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 579 ~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++ ... ..||||||||++|||||+.+|++|||||||++||.++...+.+.+.
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~ 200 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLK 200 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHH
Confidence 32 111 3799999999999999999999999999999999999998887653
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=232.62 Aligned_cols=168 Identities=26% Similarity=0.414 Sum_probs=142.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++.+|++..-. +..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.+++... +++++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34566666543 346899999999999999999999999999999999999999999999999998754 55688888
Q ss_pred EEccCCccc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~--~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
|+...+-+= .-|+.||++|.+. .+.+++.+++|++.+++.++. ++| -.+||-||+.|+||||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp--------~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLP--------VGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccc--------hhhcchhHHHHHHHHHHHcCCC
Confidence 888777665 7799999998732 125679999999999998763 223 1479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|++||||||++||.+.++.....+
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~ 173 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALM 173 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHH
Confidence 999999999999999998766543
No 356
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-28 Score=234.09 Aligned_cols=169 Identities=28% Similarity=0.395 Sum_probs=146.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+.+|.+ ..||+|+|++||+|+.++|+||+|+|||||+.+++|+.++++|+|.+||.++.+++.+.|-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999974 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 530 FVGQEPQLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 530 ~V~Qd~~LF-~gTI~eNI~~g~~~~-------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
+.-|+.++= .-||+|=+.||+-|- -+..-+.+|++--++.+.=++. =..||||||||--||-.
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry---------Ld~LSGGQrQRAfIAMV 149 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY---------LDELSGGQRQRAFIAMV 149 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh---------HHhcccchhhhhhhhee
Confidence 999999976 569999999995321 1233455677666654432211 03699999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
+..+.+.++||||..+||-.-...+++.+
T Consensus 150 laQdTdyvlLDEPLNNLDmkHsv~iMk~L 178 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKIL 178 (252)
T ss_pred eeccCcEEEecCcccccchHHHHHHHHHH
Confidence 99999999999999999999988888864
No 357
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.95 E-value=1.1e-24 Score=220.15 Aligned_cols=270 Identities=22% Similarity=0.289 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 135 LVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFL---VLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211 (637)
Q Consensus 135 ~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l---~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf 211 (637)
++++++.++..+..+..|.+++..++.....+.........+. ++..++...+.....+...+...++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888899888877653222111001111111 1111222233333444556788889999999999
Q ss_pred HHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006650 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291 (637)
Q Consensus 212 ~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~i~~~~ 291 (637)
+|++++|..+|++.++|++++|+++|++.+++.+...+..++..+...++.+++++.+||++++++++..|++.++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVM 371 (637)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (637)
.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+.....++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888777777776666666666788
Q ss_pred HHHHHHHH-HHhCCcCHHHHHHHHHHHHHHHHHH
Q 006650 372 AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYAT 404 (637)
Q Consensus 372 ~l~~g~~l-v~~g~it~G~l~a~~~~~~~l~~~~ 404 (637)
++++|+++ +..|++|+|+++++..|..++..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 89999999 9999999999999999998888774
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=1.3e-28 Score=302.29 Aligned_cols=165 Identities=22% Similarity=0.366 Sum_probs=132.2
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHhcceEEEccCCcccc-c
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-M 540 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-g 540 (637)
..+|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++++.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999987654 3788999999987775 6
Q ss_pred cHHHHHhcCCC-C----------CCCH----------HHH---HHHHHHcC------HHHHHH--cCCCCcccccCC---
Q 006650 541 DIKSNIMYGCP-K----------DVKN----------EDI---EWAAKQAY------VHEFIL--SLPCGYETLVDD--- 585 (637)
Q Consensus 541 TI~eNI~~g~~-~----------~~~d----------e~v---~~A~~~a~------l~~fI~--~lP~G~dT~vge--- 585 (637)
|++||+.|+.. . +.+. +++ .+++...+ .++.++ .|.+-.||.||+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987511 0 0111 111 11111111 223333 345567899987
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++||||||||++|||||+.+|++++|||||++||+.+...|.+.+.+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~ 381 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ 381 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988643
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=7.7e-28 Score=232.65 Aligned_cols=124 Identities=30% Similarity=0.484 Sum_probs=99.6
Q ss_pred CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHH
Q 006650 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 464 ~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
..++|+|+||++++|+++||+||||||||||+++++ +++|+|.++|.. .. ..|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH----------
Confidence 357999999999999999999999999999999985 369999998862 22 22456888887
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCC
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD--PAILLLDEATSALD 619 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~--p~ILILDEaTSaLD 619 (637)
. ++++.++-+..+ .+. ..||||||||++||||++++ |+++||||||++||
T Consensus 68 ----------------~---------~~l~~~~L~~~~-~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ----------------L---------QFLIDVGLGYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ----------------H---------HHHHHcCCCccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 1 233333222211 222 48999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006650 620 SESEHYVKANTLD 632 (637)
Q Consensus 620 ~~tE~~I~~~il~ 632 (637)
+++.+.+.+.+.+
T Consensus 122 ~~~~~~l~~~l~~ 134 (176)
T cd03238 122 QQDINQLLEVIKG 134 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997644
No 360
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=8.7e-28 Score=224.94 Aligned_cols=173 Identities=29% Similarity=0.453 Sum_probs=136.6
Q ss_pred EEEEEEEEECCC------CCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH
Q 006650 450 VQFVNISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 450 I~f~nVsF~Y~~------~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~ 523 (637)
++++|+|-++.. +....+.+.|||++++|+++||+|.+|||||||+|.|.|..+|++|+|++||+++.-=|..+
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 456666654432 22235789999999999999999999999999999999999999999999999998777777
Q ss_pred HhcceEEEccCCc-----------cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHH
Q 006650 524 LREKIGFVGQEPQ-----------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (637)
Q Consensus 524 lR~~I~~V~Qd~~-----------LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQ 592 (637)
..++|-+++|||. +.++.++-|=.+. +..-.+++.+-++.+|+ +||- +.+--..||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~--~~~R~~~i~~TL~~VGL------~Pdh--an~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE--PEQRRKQIFETLRMVGL------LPDH--ANYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCC--hHHHHHHHHHHHHHhcc------Cccc--cccchhhcCchh
Confidence 7788999999984 3344444443332 23445677888888876 3532 222335799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+|+||||+-+|+|+|-|||-++||..-..++....++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~Le 194 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888876544
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=6.6e-27 Score=259.80 Aligned_cols=163 Identities=33% Similarity=0.544 Sum_probs=126.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|+++ ++|+|+||++.+|+++||||++|||||||+|+|+|...|++|+|..++. -+|
T Consensus 3 ~i~~~~ls~~~g~~---~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGDR---PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCCc---eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 48999999999643 6999999999999999999999999999999999999999999998761 279
Q ss_pred EEEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHH-----------------------------cCHHHHHHcCCCC
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQ-----------------------------AYVHEFILSLPCG 578 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~-----------------------------a~l~~fI~~lP~G 578 (637)
+|++|++.+.++ |++|.+.-|.. . -.++.+..+. +.+......| |
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g 143 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFG-E--LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--G 143 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhH-H--HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--C
Confidence 999999999965 99999987732 1 1111111111 1111122221 1
Q ss_pred cccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 579 YETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 579 ~dT~vge-~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
+...-.. +.||||||-|++|||||+.+|++|+|||||++||.++-.-+.+.+
T Consensus 144 ~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L 196 (530)
T COG0488 144 FPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL 196 (530)
T ss_pred CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 2222001 379999999999999999999999999999999999987777654
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=4.9e-27 Score=271.45 Aligned_cols=179 Identities=24% Similarity=0.323 Sum_probs=127.8
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEECCEeCC--CCCH-
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLT--DLDI- 521 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y---~p~~G~I~idG~di~--~i~~- 521 (637)
..|+++||+|+|+++ ++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++. +.+.
T Consensus 176 ~~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 359999999999643 5999999999999999999999999999999999864 588999986555421 1111
Q ss_pred -----------HHHhcceEEEccCCccccccHHHHHhcCCCCCCCH----HHHHHHHHHcCH----------HHHHHcCC
Q 006650 522 -----------RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN----EDIEWAAKQAYV----------HEFILSLP 576 (637)
Q Consensus 522 -----------~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~d----e~v~~A~~~a~l----------~~fI~~lP 576 (637)
..+++.+++++|++.+...+..+|.........+. +++.++++..++ .+.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12456689999998776556666653211111122 233333333322 1222222
Q ss_pred CCcccc-cCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 577 CGYETL-VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 577 ~G~dT~-vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++.. ... ..||||||||++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~ 388 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLL 388 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 23211 111 4799999999999999999999999999999999999999888753
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-26 Score=214.01 Aligned_cols=175 Identities=32% Similarity=0.476 Sum_probs=121.2
Q ss_pred cEEEEEEEEECC----CCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC--C--EeCCCCC
Q 006650 449 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--G--FPLTDLD 520 (637)
Q Consensus 449 ~I~f~nVsF~Y~----~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id--G--~di~~i~ 520 (637)
.+..+||+.+|. ++-.-||++|+||+++.||.+++=||||||||||++.|-+-|.|++|+|++- | .|+-.-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 467888877763 2223479999999999999999999999999999999999999999999994 2 2443333
Q ss_pred HH----HHhcceEEEccCCcccccc-----HHHHH-hcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCCh
Q 006650 521 IR----WLREKIGFVGQEPQLLQMD-----IKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 590 (637)
Q Consensus 521 ~~----~lR~~I~~V~Qd~~LF~gT-----I~eNI-~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSG 590 (637)
+. -.|+.||||+|=--....- +.|-+ ..|-+.+.-.++....+...++-+-.=+|| ...+||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La--------PaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA--------PATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC--------CcccCC
Confidence 32 3466699999943222211 11111 122111111111222222222222222222 358999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||+||+-|||.++-|-|||+|||||++||+.+.+.|.+.|-
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~ 196 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999988753
No 364
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=7e-26 Score=234.65 Aligned_cols=177 Identities=31% Similarity=0.374 Sum_probs=140.5
Q ss_pred cEEEEEEEEECCC-CCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCCHH
Q 006650 449 HVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~-~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~i~~~ 522 (637)
-++++|+|.+|.. +....+.+||||+|++||++||||+||||||--++-++|+.+- -+|+|.++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3778888877742 1235699999999999999999999999999999999999864 379999999999999998
Q ss_pred HHhc----ceEEEccCCccc-------cccHHHHHhcCC--CCCCCHHHHHHHHHHcCHHHH---HHcCCCCcccccCCC
Q 006650 523 WLRE----KIGFVGQEPQLL-------QMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEF---ILSLPCGYETLVDDD 586 (637)
Q Consensus 523 ~lR~----~I~~V~Qd~~LF-------~gTI~eNI~~g~--~~~~~de~v~~A~~~a~l~~f---I~~lP~G~dT~vge~ 586 (637)
.+|+ +|++|+|||.-= ..-|.|-|++-+ ...+-.+++.+.++.+|+.+- +++.| .
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 8886 799999999632 223555555531 122345677777788776442 22222 4
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
.||||||||+-||-||..+|++||-||||-|||....++|.+.+ +.|-
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll-~~Lq 204 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLL-KELQ 204 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHH-HHHH
Confidence 79999999999999999999999999999999999999999864 5443
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=6.4e-25 Score=244.02 Aligned_cols=163 Identities=29% Similarity=0.409 Sum_probs=137.6
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
.-++++||+|+|+++ .++++|+||.|++|+++|||||+|+|||||+|+|+|-..|.+|+|.++-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 469999999999754 47999999999999999999999999999999999999999999998651 37
Q ss_pred eEEEccCC-ccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~-~LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
|||.+|+. .++ +.|+.|++.-+ .++..+.+++..+...++..--.. +.| +.||||||-|+++|+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~-~~~~~e~~~r~~L~~f~F~~~~~~------~~v--~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEG-FPDGDEQEVRAYLGRFGFTGEDQE------KPV--GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhh-CccccHHHHHHHHHHcCCChHHHh------Cch--hhcCHhHHHHHHHHHHhccC
Confidence 99999998 444 44899999876 345457888888888776433221 111 37999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|.+|||||||++||.+|-..+.++|.+
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~ 484 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLD 484 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHh
Confidence 999999999999999999999988654
No 366
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.8e-25 Score=218.59 Aligned_cols=171 Identities=24% Similarity=0.485 Sum_probs=143.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.+++++|+-+|.+ ..+++||||+++||++.+++|++|+||||.+++|+||.+|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 4789999999964 369999999999999999999999999999999999999999999999999875 567899
Q ss_pred EEEccCCccc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCC-CcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPC-GYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~-G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
||.|-|--|+ ..|+.|-|.|... .....+|+.. .+..|.+++.- |+.|.- =..||-|-.|+|-+--|++++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~~~~~k-Ik~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVGKKTKK-IKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccccccccch-HHHhhhhhhHHHHHHHHHhcC
Confidence 9999999999 6789999988521 3345555532 34567776531 221110 027999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|||||.|+|||.+.+.+.+.+++
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~ 175 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFE 175 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHH
Confidence 999999999999999999999998865
No 367
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=211.37 Aligned_cols=177 Identities=26% Similarity=0.347 Sum_probs=146.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHHh-
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLR- 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~i~~~~lR- 525 (637)
-++++|++.+-.++ +.+|++|||+|++||+.||.||+|||||||.+.|+|. |++++|+|++||+|+.++++++.-
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 37899999998653 3699999999999999999999999999999999997 689999999999999999988754
Q ss_pred cceEEEccCCccccc-cHHHHHhcCCC-----CC---CCHHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHHHH
Q 006650 526 EKIGFVGQEPQLLQM-DIKSNIMYGCP-----KD---VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~-----~~---~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
.-|.+-+|.|.=++| |+.+=++.+.+ +. ...+++.++++..++++ |.++ .|+ .++|||||.|
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN-~GFSGGEkKR 152 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVN-EGFSGGEKKR 152 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccC-CCcCcchHHH
Confidence 449999999999987 46665554311 11 23567888889888887 3332 122 2699999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
.-|+-+++-+|++.|||||-|+||-.+-+.|.+.+ +.+.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i-~~lr~ 192 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGI-NALRE 192 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHH-HHHhc
Confidence 99999999999999999999999999999888874 55543
No 368
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=6.6e-25 Score=207.95 Aligned_cols=174 Identities=24% Similarity=0.392 Sum_probs=139.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC-EeCCCCCHHHHhc-
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWLRE- 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG-~di~~i~~~~lR~- 526 (637)
.++++|||.+|++- .+|+|+||++.|||.=+|+||+|+||||++..|.|--.|+.|+++++| .|+..++...+-+
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 47899999999753 599999999999999999999999999999999999999999999999 8999999776644
Q ss_pred ceEEEccCCccc-cccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHH
Q 006650 527 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (637)
Q Consensus 527 ~I~~V~Qd~~LF-~gTI~eNI~~g~~~~-------------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQ 592 (637)
-||==+|.|..| +-|++||+.+.+..+ ...+++.+.+...++.+--... ...||.||
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~---------A~~LSHGq 152 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL---------AALLSHGQ 152 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh---------hhhhccch
Confidence 499999999999 569999998763321 1123555555555554433221 24899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||++-|+--+..+|++|+||||++++--+...+.-+ ++++|.
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~tae-Ll~~la 194 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE-LLKSLA 194 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHH-HHHHHh
Confidence 999999999999999999999999994443334444 345554
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=8.9e-25 Score=215.66 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=106.7
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---------ceEEECCEeCCCCCHHHHhcceEEEccCCcccc
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---------GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 539 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~---------G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~ 539 (637)
+++++++++| .++|+||||||||||++.|.++..|.. |++.++|++... ...+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 468888887654 23468899999999988
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCC
Q 006650 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT 615 (637)
Q Consensus 540 gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl----k~p~ILILDEaT 615 (637)
|+ .. ..+++.++++. ++-.+..+ ..||||||||++||||+. ++|++++|||||
T Consensus 89 --------~~-~~--~~~~~~~~l~~----------~~~~~~~~--~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YS-II--SQGDVSEIIEA----------PGKKVQRL--SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------ee-EE--ehhhHHHHHhC----------CCccccch--hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 33 11 23455555555 11122222 379999999999999985 677999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 006650 616 SALDSESEHYVKANTL 631 (637)
Q Consensus 616 SaLD~~tE~~I~~~il 631 (637)
++||+++...+.+.+.
T Consensus 146 ~~LD~~~~~~l~~~l~ 161 (197)
T cd03278 146 AALDDANVERFARLLK 161 (197)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999999999998753
No 370
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=1.2e-23 Score=210.37 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=118.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEee-CCCEEEEEcCCCCcHHHHHHHHh-cCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~-~Ge~vAIVG~SGsGKSTL~~LL~-r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.|+++|+. +|.++ ++|+|+.. +|++++|+|+||||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 68999999 88542 46667644 58999999999999999999999 5887777777765 2334455566788
Q ss_pred ceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHH--HHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~--~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
.|++++|++ +....+++++ ..+.+++.+.. +..++.+++++- ...||||||||++||||+..
T Consensus 77 ~v~~~f~~~----~~~~~~~r~~---gl~~~~~~~~~~l~~g~l~~~l~~~---------~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLG----GKKYRVERSR---GLDYDQFTRIVLLPQGEFDRFLARP---------VSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEEC----CeEEEEEEec---CCCHHHHHHhhhhhhcchHHHhcCC---------ccccCHHHHHHHHHHHHHHh
Confidence 899999998 3333444443 44556555432 333344443221 14899999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 605 ----------DPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 605 ----------~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
+|+++||||||++||+++...+.+.+ +.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l-~~~ 179 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATAL-ELI 179 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHH-HHH
Confidence 67999999999999999999998875 444
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.6e-23 Score=211.26 Aligned_cols=152 Identities=21% Similarity=0.187 Sum_probs=91.2
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHH-HHHhcCCCCCCceEEECC-------EeC---CCCCHHHHhc-ceEEEc
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDG-------FPL---TDLDIRWLRE-KIGFVG 532 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~-~LL~r~y~p~~G~I~idG-------~di---~~i~~~~lR~-~I~~V~ 532 (637)
.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+.+ ..+ ..-+...++. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 5799999999999999999999999999996 4443 134433210 011 1111111222 234444
Q ss_pred cCCcc-cc-----ccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHcCCCCccc-ccCC--CCCChHHHHHHHHHHH
Q 006650 533 QEPQL-LQ-----MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAIARA 601 (637)
Q Consensus 533 Qd~~L-F~-----gTI~eNI~~g~~--~~~~de~v~~A~~~a~l~~fI~~lP~G~dT-~vge--~~LSGGQkQRIaIARA 601 (637)
|++.. ++ +++.+...+... .....++..+.++..+ +.. .... ..||||||||++||||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVG-----------LGYLTLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCC-----------CCcccccCccCcCCHHHHHHHHHHHH
Confidence 44431 11 122222211100 0001111122233222 222 1222 4799999999999999
Q ss_pred HcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDP--AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p--~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++| ++|||||||++||+.+...+.+.+.+
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~ 184 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKR 184 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99998 59999999999999999999998643
No 372
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=9.6e-23 Score=201.07 Aligned_cols=146 Identities=27% Similarity=0.408 Sum_probs=119.0
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
..+|+||||++++||.+||||++|||||||+|+|+|.|+|++|+|.++|.--.-++. ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 468999999999999999999999999999999999999999999999953222211 122222 368899
Q ss_pred HHhc-----CCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 006650 545 NIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (637)
Q Consensus 545 NI~~-----g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD 619 (637)
||.+ |-.....++.+.+..+-|.+.||++. | =++.|-|.+-|||.|=|.--+|+|||+||+.|..|
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P--------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD 179 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P--------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c--------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC
Confidence 9965 32223346777888899999999875 3 15899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006650 620 SESEHYVKANT 630 (637)
Q Consensus 620 ~~tE~~I~~~i 630 (637)
+.=.++=++.+
T Consensus 180 ~~F~~K~~~rl 190 (249)
T COG1134 180 AAFQEKCLERL 190 (249)
T ss_pred HHHHHHHHHHH
Confidence 98777766664
No 373
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.5e-23 Score=189.80 Aligned_cols=170 Identities=25% Similarity=0.364 Sum_probs=125.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE-----eCCCCCHHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF-----PLTDLDIRW 523 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~-----di~~i~~~~ 523 (637)
-++++++|..|.++ .--+||||++-|||+.||||+||||||||+++|.+-..|++|+|.++-. |+-..+..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37789999999764 3679999999999999999999999999999999999999999999653 333334333
Q ss_pred ----HhcceEEEccCCccccccHHHHHhcCCC--CCCCHHHHHHHH------HHcCHHHHHHcCCCCcccccCC--CCCC
Q 006650 524 ----LREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKNEDIEWAA------KQAYVHEFILSLPCGYETLVDD--DLLS 589 (637)
Q Consensus 524 ----lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~de~v~~A~------~~a~l~~fI~~lP~G~dT~vge--~~LS 589 (637)
+|.-.|+|.|+|- |-+++... .++- |++...- -.+.+.+|.++..-.. +.+.+ +.+|
T Consensus 83 RR~L~RTeWG~VhQnP~-------DGLRm~VSAG~NiG-ERlma~G~RHYG~iR~~a~~WL~~VEI~~-~RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNIG-ERLMAIGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCcc-------ccceeeeccCCccc-hhHHhhhhhhhhhHHHHHHHHHHhcccCc-ccccCcccccc
Confidence 4556899999993 33333210 1121 2222110 0123456776543222 23444 5899
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
||.+||+-|||-|...|+++++||||.+||..-.+++.+.+
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDll 194 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999998888777754
No 374
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3.8e-23 Score=205.37 Aligned_cols=158 Identities=24% Similarity=0.360 Sum_probs=113.5
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE-EccCCccc-cccH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLL-QMDI 542 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~-V~Qd~~LF-~gTI 542 (637)
.++.+||||+||||++++++|++|+||||.+|+|.|+..|++|.|.++|.+=.+= .+++-+++++ ..|...|. +-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechh
Confidence 3588999999999999999999999999999999999999999999999977663 4444445554 45655443 2223
Q ss_pred HHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 006650 543 KSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (637)
Q Consensus 543 ~eNI~~g~-~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD 619 (637)
.|-+..-. -.++.|++..+- ++.+++=| +++..+-. +.||=|||-|.-||-||+++|++|+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r-----~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAER-----LDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHH-----HHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 33222110 012333333221 11111111 23333333 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006650 620 SESEHYVKANT 630 (637)
Q Consensus 620 ~~tE~~I~~~i 630 (637)
......|.+.+
T Consensus 189 V~aq~~ir~Fl 199 (325)
T COG4586 189 VNAQANIREFL 199 (325)
T ss_pred hhHHHHHHHHH
Confidence 99999998875
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=2.3e-23 Score=212.18 Aligned_cols=162 Identities=26% Similarity=0.313 Sum_probs=112.4
Q ss_pred cEEEEEEEEE-CCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh----------------cCCCCCCc----
Q 006650 449 HVQFVNISFH-YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------RLYEPSDG---- 507 (637)
Q Consensus 449 ~I~f~nVsF~-Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~----------------r~y~p~~G---- 507 (637)
+|+++| |+ |.+ ..++++++ |++++|+||||||||||+++|. ++..+.+|
T Consensus 3 ~i~~~n--fksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~ 72 (243)
T cd03272 3 QVIIQG--FKSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVM 72 (243)
T ss_pred EEEEeC--ccCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCc
Confidence 355554 43 543 24788877 8999999999999999999998 44555566
Q ss_pred ----eEEECCEeCCCC---CHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHH--HcCCCC
Q 006650 508 ----QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCG 578 (637)
Q Consensus 508 ----~I~idG~di~~i---~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI--~~lP~G 578 (637)
+|.+++.+-... +...+++.+++++|+..++. ..++.+++..+++..++...- ...|+|
T Consensus 73 ~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg 140 (243)
T cd03272 73 SAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQG 140 (243)
T ss_pred eEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcC
Confidence 666665322111 22345677888887765532 245667788887777664311 012334
Q ss_pred ccccc-------CC--CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 579 YETLV-------DD--DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 579 ~dT~v-------ge--~~LSGGQkQRIaIARALl----k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
..+.+ ++ ..||||||||++||||++ ++|+++||||||++||+++.+.+.+.+.+
T Consensus 141 ~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~ 207 (243)
T cd03272 141 KINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207 (243)
T ss_pred chHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 33222 22 389999999999999996 46899999999999999999999997644
No 376
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.88 E-value=3.6e-23 Score=211.83 Aligned_cols=157 Identities=24% Similarity=0.304 Sum_probs=105.7
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-----c-CCC----CCCc-----------eEEECCEeCCCCCHHHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LYE----PSDG-----------QIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-----r-~y~----p~~G-----------~I~idG~di~~i~~~~l 524 (637)
..|+|+|++||.|+.++|.|.||||||||++-++ + ++. |..+ -|.+|..|+.. +.++.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~ 87 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSN 87 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCc
Confidence 4799999999999999999999999999998552 2 222 3333 35666655533 11111
Q ss_pred hcc---------------------------eEEEccCCc-cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCC
Q 006650 525 REK---------------------------IGFVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 576 (637)
Q Consensus 525 R~~---------------------------I~~V~Qd~~-LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP 576 (637)
... +.|..++.. +.+.|+.||+.|... ....++..++++..++.+.
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~vgL~~l----- 161 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDVGLGYI----- 161 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHcCCchh-----
Confidence 111 334444444 245677777766521 1122334444444443221
Q ss_pred CCcccccCC--CCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 577 CGYETLVDD--DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 577 ~G~dT~vge--~~LSGGQkQRIaIARALlk~---p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
..+. ..||||||||++|||||.++ |+++||||||++||+++...+.+.+ +.+.
T Consensus 162 -----~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L-~~l~ 219 (261)
T cd03271 162 -----KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVL-QRLV 219 (261)
T ss_pred -----hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHH-HHHH
Confidence 2344 48999999999999999996 7999999999999999999999875 4443
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=2.4e-22 Score=215.27 Aligned_cols=164 Identities=26% Similarity=0.340 Sum_probs=131.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|.|+||+|.|++++ .+++++||-|.+++.+|+|||+|+|||||+||+.|...|+.|.|.-.-+..-- .+.++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~----~y~Qh- 461 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLP----RYNQH- 461 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccch----hhhhh-
Confidence 589999999998653 69999999999999999999999999999999999999999998765433211 11111
Q ss_pred EEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 006650 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~I 608 (637)
.++.-.++.|..||+.=--++.-..|++...+...|+....+.-| =++||+|||.|++.||.+++.|.|
T Consensus 462 ---~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p--------~~~LS~Gqr~rVlFa~l~~kqP~l 530 (614)
T KOG0927|consen 462 ---LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP--------MSQLSDGQRRRVLFARLAVKQPHL 530 (614)
T ss_pred ---hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc--------hhhcccccchhHHHHHHHhcCCcE
Confidence 234556788888988532122345678888999988764443322 148999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~i 630 (637)
|+|||||++||.++-....++|
T Consensus 531 LlLDEPtnhLDi~tid~laeai 552 (614)
T KOG0927|consen 531 LLLDEPTNHLDIETIDALAEAI 552 (614)
T ss_pred EEecCCCcCCCchhHHHHHHHH
Confidence 9999999999999999888886
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=2.8e-22 Score=205.35 Aligned_cols=153 Identities=18% Similarity=0.266 Sum_probs=111.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCE-eCCCCC--HHHHhcceEEEccCCcc----------ccccHH
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD--IRWLREKIGFVGQEPQL----------LQMDIK 543 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~-di~~i~--~~~lR~~I~~V~Qd~~L----------F~gTI~ 543 (637)
...++||||||||||||++.|.++..|+ .|+++..|. |+-... ....+..|++++|++.- -.-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568999887 442111 11235589999999632 146788
Q ss_pred HHHhcCCC-------CCCCHHHHHHHHHHcCHH----HH---------HHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 544 SNIMYGCP-------KDVKNEDIEWAAKQAYVH----EF---------ILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 544 eNI~~g~~-------~~~~de~v~~A~~~a~l~----~f---------I~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
+||..+.. .....+++.++++.+++. .| +.++++-.+.. ...||||||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~--~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES--LTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc--ccccCHHHHHHHHHHHHHH
Confidence 88866521 123457888888888764 01 00111111111 1379999999999999997
Q ss_pred ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 ----RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 ----k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|+++||||||++||+++...+.+.+.+
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~ 215 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKT 215 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 68899999999999999999999987543
No 379
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=8.1e-22 Score=233.78 Aligned_cols=174 Identities=21% Similarity=0.374 Sum_probs=148.6
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC-CCHHHHhc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLRE 526 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-i~~~~lR~ 526 (637)
..+..+|++..|+.+. . +.+++|+.|++||..++-|++||||||++|++.|...|++|++.++|.++.. .+....|+
T Consensus 563 ~~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 4688999999998653 2 8999999999999999999999999999999999999999999999999965 45557999
Q ss_pred ceEEEccCCccc-cccHHHHHhcCC-CCCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLL-QMDIKSNIMYGC-PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF-~gTI~eNI~~g~-~~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
++||.||+.-|+ .-|.||.+.+-. -.... .+.+.+.++..++.++.+. . .+.+|||+|.||++|-
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~--~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q--VRTYSGGNKRRLSFAI 711 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c--hhhCCCcchhhHHHHH
Confidence 999999999998 678999996631 11222 2346777788877777554 2 3689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++.+|++++|||||+++|+.+++.+.+.+.+
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIAR 743 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987644
No 380
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=2.5e-21 Score=225.90 Aligned_cols=158 Identities=28% Similarity=0.458 Sum_probs=132.8
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEECCEeCCCCCHHHHhcceEEEccC-Ccccccc
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGFVGQE-PQLLQMD 541 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd-~~LF~gT 541 (637)
...|+|||==++||..+||+|+||||||||+++|+|=-. ..+|+|+|||.+..+ +..++.+|||.|+ .|+=.-|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccc
Confidence 469999999999999999999999999999999997643 358999999999875 7999999999875 5677889
Q ss_pred HHHHHhcC----CCCCCCHHH----HHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC-CEEE
Q 006650 542 IKSNIMYG----CPKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP-AILL 610 (637)
Q Consensus 542 I~eNI~~g----~~~~~~de~----v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p-~ILI 610 (637)
|||-+.|. .+.+++++| |+++.+..++.++ -|..||. .+||..||.|+.||=-|+.|| .||.
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 99999885 234555543 4556666666555 3556775 599999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH
Q 006650 611 LDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||+||+++...|++.+.+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrk 975 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRK 975 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999997533
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=6.7e-22 Score=197.38 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=111.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh-cc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR-~~ 527 (637)
+|+++|.- +|.+ ..+++++++ +++||+|||||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 57788877 7854 358999987 899999999999999999997 44554432 334 67
Q ss_pred eEEEccCCccccc-cHHHHHhcCCCCCCCHHHHH-----HHHHH----cCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIE-----WAAKQ----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~-----~A~~~----a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
+++++|+..+++. |.++++.+... ....+.++ ..... .+--..+.+||++.++.++ .||||||||++
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~--~lS~G~~~r~~ 137 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS--NLSGGEKTLSS 137 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh--hcCHHHHHHHH
Confidence 9999999887764 67777765521 11111000 00000 0111134456888777654 69999999999
Q ss_pred HHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAIL----RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALl----k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+. ++|++++|||||++||+++...+.+.+.+
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~ 176 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKE 176 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 999996 35899999999999999999999987543
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.84 E-value=6.1e-21 Score=189.42 Aligned_cols=133 Identities=23% Similarity=0.313 Sum_probs=102.9
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHh----cCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCC-----cccc-cc
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLLQ-MD 541 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~----r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~-----~LF~-gT 541 (637)
++++.+| +++|+|+||||||||++.|. |.-.|++|.+.-+. +.+.....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~---~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP---KLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH---HHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4567788 99999999999999999984 88888888776222 2223345677899999998 4443 29
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH------HHHHHHHcCCCCEEEEeCCC
Q 006650 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEAT 615 (637)
Q Consensus 542 I~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR------IaIARALlk~p~ILILDEaT 615 (637)
+.||+.++ + ++++.+.+ ++. -..|||||+|| +|||||+..+|++++|||||
T Consensus 93 ~~~~~~~~-~----~~~~~~~~---------~~~---------~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC-H----QGESNWPL---------LDM---------RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee-c----hHHHHHHH---------hcC---------ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 99999876 3 34443333 111 14899999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHH
Q 006650 616 SALDSESEH-YVKANTL 631 (637)
Q Consensus 616 SaLD~~tE~-~I~~~il 631 (637)
++||+++.. .+.+.+.
T Consensus 150 ~~LD~~~~~~~l~~~l~ 166 (204)
T cd03240 150 TNLDEENIEESLAEIIE 166 (204)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 999999988 8887653
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=7.4e-19 Score=191.42 Aligned_cols=173 Identities=27% Similarity=0.428 Sum_probs=140.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH-HHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~-~lR~~ 527 (637)
-++++|++.. ..++|+||++.+||+++|.|--|||+|=+++.|.|..++.+|+|.+||++++--++. ..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4667777642 157899999999999999999999999999999999999999999999998877754 88888
Q ss_pred eEEEccCC----ccccccHHHHHhcCCCCCCCHH-HHHHHHHHcCHHHHHHcCCCCcccccCC---CCCChHHHHHHHHH
Q 006650 528 IGFVGQEP----QLLQMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIA 599 (637)
Q Consensus 528 I~~V~Qd~----~LF~gTI~eNI~~g~~~~~~de-~v~~A~~~a~l~~fI~~lP~G~dT~vge---~~LSGGQkQRIaIA 599 (637)
|+|||-|= -+...||++||++..-.....- -+....+.+-+.+++.+|. ..|.=-+ ..||||-+|++.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~--Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR--IKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcC--cccCCccchhhcCCchhhhhHHHH
Confidence 99999764 4668999999988621111111 2455666777778888763 2222111 48999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|.|..+|++|||||||-+.|--+.+.|-+.|
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li 444 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHH
Confidence 9999999999999999999999999999865
No 384
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.3e-19 Score=185.11 Aligned_cols=158 Identities=27% Similarity=0.418 Sum_probs=120.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-+-+.||+|.||+. .|.+++++|-|---..||||||+|.|||||++||.|-.+|+.|+.+=+ -|-+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 35689999999975 489999999999999999999999999999999999999999976543 35578
Q ss_pred EEEccCCc---cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccC---CCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQ---LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD---DDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~---LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vg---e~~LSGGQkQRIaIARAL 602 (637)
|...|..- =-..|-.|-+.-+ -+...++-+.++-.-|+ .+..- -..||||||-|+|+|---
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL-----------~sHAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGL-----------ASHAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhh-----------hhccceEeeeecCCcchHHHHHHHHh
Confidence 88777652 1122333333221 13344444444444333 22221 148999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++.|++|||||||.+||-++-..+-++|-+
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 999999999999999999999999888743
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=1e-18 Score=186.85 Aligned_cols=175 Identities=24% Similarity=0.450 Sum_probs=144.3
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC-CCCCHHHHhc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLRE 526 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di-~~i~~~~lR~ 526 (637)
.-++++|++..=.. ..+.++||||++.+||++||.|-+|-|-+-|+.+|+|+..|.+|+|.++|+|+ ...+...+|+
T Consensus 256 ~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 35889999986532 24689999999999999999999999999999999999999999999999997 6778888777
Q ss_pred c-eEEEccCCc----cccccHHHHHhcCCCCC--------CCHHHHHHHHHHcCHHHHHHcCCCCcccccC-C----CCC
Q 006650 527 K-IGFVGQEPQ----LLQMDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCGYETLVD-D----DLL 588 (637)
Q Consensus 527 ~-I~~V~Qd~~----LF~gTI~eNI~~g~~~~--------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vg-e----~~L 588 (637)
. +||||.|-+ ..+.|+.||+.+++... .+..++.+.+ .+.|++ ||-.-. . ++|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~----fdVr~~~~~~~a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEE----FDVRAPSPDAPARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHH----cCccCCCCCcchhhc
Confidence 6 999999885 77999999999873221 2233333332 334444 444432 2 389
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 589 SGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
|||..||+-+||-|.++|++||..+||-+||..+.+.|.+.|++.
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~ 449 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.78 E-value=3.7e-19 Score=181.87 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe-CC------CCCHHHHhcceEEEccCC--ccccccHHHHH-hc
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-LT------DLDIRWLREKIGFVGQEP--QLLQMDIKSNI-MY 548 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d-i~------~i~~~~lR~~I~~V~Qd~--~LF~gTI~eNI-~~ 548 (637)
..++|+||+|||||||+..|.++..+..|++..++.+ +- ..+.....-.+.+..|++ .++..+++++- .|
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 10 111123333455555542 35566655542 11
Q ss_pred C-CCCCCCHHHHHHHHHHcCHHHHHHc--CCCCcccccCC-----------CCCChHHHHHHHHHHHHcC----CCCEEE
Q 006650 549 G-CPKDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD-----------DLLSGGQKQRIAIARAILR----DPAILL 610 (637)
Q Consensus 549 g-~~~~~~de~v~~A~~~a~l~~fI~~--lP~G~dT~vge-----------~~LSGGQkQRIaIARALlk----~p~ILI 610 (637)
. +....+.+++.+.++..+++.+... .++|-=+.+.+ ..||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1234678888899999998532211 12333232211 3699999999999999975 499999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH
Q 006650 611 LDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++||.++...+.+.+.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~ 204 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIRE 204 (247)
T ss_pred EecccccCCHHHHHHHHHHHHH
Confidence 9999999999999999887543
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=1.2e-18 Score=213.04 Aligned_cols=169 Identities=21% Similarity=0.305 Sum_probs=112.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHH---------HHhcCCCCCCc--------eEEE
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSDG--------QIYI 511 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~---------LL~r~y~p~~G--------~I~i 511 (637)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 578888751 3699999999999999999999999999999 55564333211 2456
Q ss_pred CCEeCCCCC----------HHHHh---------cceE-----EEccC------------------C--------------
Q 006650 512 DGFPLTDLD----------IRWLR---------EKIG-----FVGQE------------------P-------------- 535 (637)
Q Consensus 512 dG~di~~i~----------~~~lR---------~~I~-----~V~Qd------------------~-------------- 535 (637)
|-.++..-. .+.+| ++.| +.+|. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 655553311 11344 1111 12221 1
Q ss_pred ------ccc-cccHHHHHhcCCCCCC-----CHHHHHHHHHHcCHHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHH
Q 006650 536 ------QLL-QMDIKSNIMYGCPKDV-----KNEDIEWAAKQAYVHEFILSLPCGYETL-VDD--DLLSGGQKQRIAIAR 600 (637)
Q Consensus 536 ------~LF-~gTI~eNI~~g~~~~~-----~de~v~~A~~~a~l~~fI~~lP~G~dT~-vge--~~LSGGQkQRIaIAR 600 (637)
+.+ .-||.||+.++. .++ +.+++.+.++ .+..+ |++.. .+. ..||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv-~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTA-YEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCH-HHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 122 347999998872 211 1233333332 22222 55543 454 489999999999999
Q ss_pred HHc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 601 AIL---RDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 601 ALl---k~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||+ ++|++|||||||++||+++.+.+.+.+ +.+.
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL-~~L~ 859 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVL-QSLT 859 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHH
Confidence 998 699999999999999999999999985 4443
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=1.8e-19 Score=168.24 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=128.5
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++++||+.+- -|-.+|.++..||..-+|||+|||||||+.-++|+. |-+|+|.++|.|++.++..++-++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667776421 366789999999999999999999999999999998 67999999999999999999999999
Q ss_pred EEccCC-ccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcC--
Q 006650 530 FVGQEP-QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR-- 604 (637)
Q Consensus 530 ~V~Qd~-~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk-- 604 (637)
|..|+. -.|...+..-+++-.|...--+++.++|++.+++| .+|. +.|||||+||+-+|-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEec
Confidence 888764 59999999999988543222345555555555443 4444 4899999999999988774
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHH
Q 006650 605 -----DPAILLLDEATSALDSESEHYVK 627 (637)
Q Consensus 605 -----~p~ILILDEaTSaLD~~tE~~I~ 627 (637)
..++|++|||-++||...+..+-
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHH
Confidence 25799999999999998776543
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.74 E-value=5.2e-18 Score=182.29 Aligned_cols=175 Identities=23% Similarity=0.344 Sum_probs=107.9
Q ss_pred CCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh
Q 006650 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR 525 (637)
....|.++|+|++|++. ++++|.+|++++|++++|+|++||||||+++.+.|=..|..=++-+==. -+++.+..+.
T Consensus 72 ~s~dvk~~sls~s~~g~---~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~ 147 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGV---ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQ 147 (614)
T ss_pred ccccceeeeeeeccCCc---eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHH
Confidence 34579999999999864 6999999999999999999999999999999999888886544432100 0122222111
Q ss_pred cceEEEccCCccccccHH-------HHHhcCCCCCCCHH---HHHHHHHHcCHHHHHHc----C-CCCcccccCC---CC
Q 006650 526 EKIGFVGQEPQLLQMDIK-------SNIMYGCPKDVKNE---DIEWAAKQAYVHEFILS----L-PCGYETLVDD---DL 587 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~gTI~-------eNI~~g~~~~~~de---~v~~A~~~a~l~~fI~~----l-P~G~dT~vge---~~ 587 (637)
.- |....+..+-+ |++.-.++ +.+.+ ++++-+...+.+.|=.+ | ..|.....-. .+
T Consensus 148 av-----~~v~~~~~~e~~rle~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~ 221 (614)
T KOG0927|consen 148 AV-----QAVVMETDHERKRLEYLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD 221 (614)
T ss_pred HH-----HHHhhhhHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhc
Confidence 11 11111112221 22222111 11111 12221222222111111 0 0122222212 28
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
||||||-|+|+||||+.+|++|+|||||++||.++-.-+.+.+
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L 264 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYL 264 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987776654
No 390
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=6.9e-18 Score=198.75 Aligned_cols=49 Identities=29% Similarity=0.463 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 586 DLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p---~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
..||||||||++|||||+++| +++||||||++||.++...+.+.+ +++.
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L-~~l~ 880 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVL-HRLV 880 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHH-HHHH
Confidence 489999999999999999999 999999999999999999999875 4443
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=4.6e-18 Score=167.98 Aligned_cols=139 Identities=22% Similarity=0.196 Sum_probs=93.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC--CE---eCCCCCHHHHhcceEEEccCCccccccH
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF---PLTDLDIRWLREKIGFVGQEPQLLQMDI 542 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id--G~---di~~i~~~~lR~~I~~V~Qd~~LF~gTI 542 (637)
++++++++.+| ..+|+|+||||||||+..|.-... |+.... |. ++-... .-...|.+++|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC---
Confidence 36677777776 779999999999999988864332 222111 22 111111 22456888888877665
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCC
Q 006650 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSAL 618 (637)
Q Consensus 543 ~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL----lk~p~ILILDEaTSaL 618 (637)
| + ..+.+ .+.+.+++.. .+-.+..+ +.||||||||++||||+ +.+|+++||||||++|
T Consensus 83 --~-----~--~~~~~------~~~~~~~l~~-~~~~~~~~--~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 83 --N-----P--LCVLS------QDMARSFLTS-NKAAVRDV--KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred --C-----c--CCHHH------HHHHHHHhcc-ccccCCcc--cccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 2 1 11111 1233444443 22222222 47999999999999999 6999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006650 619 DSESEHYVKANTLDS 633 (637)
Q Consensus 619 D~~tE~~I~~~il~~ 633 (637)
|..+...+.+.+.+.
T Consensus 145 D~~~~~~~~~~l~~~ 159 (198)
T cd03276 145 DMVNRKISTDLLVKE 159 (198)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999976553
No 392
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.74 E-value=2e-18 Score=152.03 Aligned_cols=75 Identities=23% Similarity=0.200 Sum_probs=72.3
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 545 (637)
++|+++||++++||.++|+||||||||||++++. +|+|.++|.|+..++.++.++.+++++|+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999999999999999999 999999999
Q ss_pred Hhc
Q 006650 546 IMY 548 (637)
Q Consensus 546 I~~ 548 (637)
|++
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 987
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.7e-18 Score=180.49 Aligned_cols=160 Identities=25% Similarity=0.303 Sum_probs=110.9
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
..+|..+|.+.+|.++ ..|++=++++..|..+++||++|+|||||++.|.. |+|.+ .++. +++|.
T Consensus 78 ~~Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~--f~ve----qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSG--FHVE----QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCc--cCch----hheec
Confidence 3579999999999754 58999999999999999999999999999999998 43322 2221 11111
Q ss_pred ceEEEccCCccccccHHHHHhcCCC---CCCCHHHHHH-HHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCP---KDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~---~~~~de~v~~-A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
---...|+ .+=.+|-+.-+..-.+ ...+-+|+.. +++-.|..+.....| -+.||||=|=|+|+||||
T Consensus 143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p--------t~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP--------TKSLSGGWRMRLALARAL 213 (582)
T ss_pred cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc--------ccccCcchhhHHHHHHHH
Confidence 11111121 2333343333322200 0113455555 666666666666555 247999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
+++|+||+|||||+.||..+-.-+.+.+
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL 241 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYL 241 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHH
Confidence 9999999999999999999877666553
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.1e-17 Score=178.92 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=133.0
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..+++.+|+|.|+..+- +.+.++++.++--+++++||++|+||||++|++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 46999999999986432 699999999999999999999999999999999999999999988866 678
Q ss_pred eEEEccCCccc-cccHHHHHhc-CCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLL-QMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF-~gTI~eNI~~-g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
|+|-.|.-.=| +-++.+=-.+ .+.+.-++||+++.|...|++.-+...+ =..||||||-|+|+|-....+
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--------i~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS--------IASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--------ccccCCcchhHHHHHHHhcCC
Confidence 88888876544 2222211111 1123458999999999998876655422 136999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|.+|||||||+.||.++-.++-++|-
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred CcEEEecCCCccccHHHHHHHHHHHH
Confidence 99999999999999999888877763
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=6.4e-17 Score=170.62 Aligned_cols=152 Identities=28% Similarity=0.368 Sum_probs=108.0
Q ss_pred EEEEECCCCCCcCcccceeEEee-----CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 454 NISFHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~-----~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
+.-+.|++- ...+.++.|+++ .||+++++||+|-||||++++|+|..+|++|. ..+ -+|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceE
Confidence 444556542 124556666655 56789999999999999999999999999997 112 257
Q ss_pred EEEccCCc-cccccHHHHHhcCCCCCCCHHHH-HHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 529 GFVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDI-EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 529 ~~V~Qd~~-LF~gTI~eNI~~g~~~~~~de~v-~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
+|=||-.. -|+||+++=+.-..+....+.-. .+.++-.++++.+++- | ..|||||-||+|||-||.|++
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~-------v--~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERP-------V--DELSGGELQRVAIAAALSREA 474 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcc-------c--ccCCchhHHHHHHHHHhcccc
Confidence 77777532 48999988775432111222222 1234444444444331 1 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
++.+||||++.||.|..-.+.++|
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHH
Confidence 999999999999999887777765
No 396
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.3e-16 Score=187.59 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=45.6
Q ss_pred cCC--CCCChHHHHHHHHHHHHcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 583 VDD--DLLSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 583 vge--~~LSGGQkQRIaIARALlk---~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
++. ..||||||||++|||||.+ +|+++||||||++||+++...+.+.+ +++.
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L-~~l~ 878 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVL-QRLV 878 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHH
Confidence 454 4899999999999999997 59999999999999999999999975 4443
No 397
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.65 E-value=8.2e-16 Score=147.29 Aligned_cols=168 Identities=22% Similarity=0.268 Sum_probs=118.9
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC-CCCCH----
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDI---- 521 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di-~~i~~---- 521 (637)
+..|++.++.|+|+.. .|+.-|+|+++|.|...-+||.+|||||||+|+|.|-.-...|.|.++|.+- .+-..
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4579999999999875 3899999999999999999999999999999999999999999999999854 22111
Q ss_pred ------HHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHH--cCCCCcccccCC--CCCChH
Q 006650 522 ------RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDD--DLLSGG 591 (637)
Q Consensus 522 ------~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~--~lP~G~dT~vge--~~LSGG 591 (637)
.+|++..+.--.-| |- -|++-|++ +.-++-+++-. .|-+=+|-.+-= ..+|-|
T Consensus 89 dl~YLGgeW~~~~~~agevp-lq-------------~D~sae~m---ifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDG 151 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVP-LQ-------------GDISAEHM---IFGVGGDDPERREKLIDILDIDLRWRMHKVSDG 151 (291)
T ss_pred ceeEeccccccccccccccc-cc-------------ccccHHHH---HhhccCCChhHhhhhhhheeccceEEEeecccc
Confidence 12333333222111 11 12332222 22223233311 111112332222 389999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 592 QkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
||.|+-|+-.|||.=++|+|||-|-.||.-..+.+.+-+-++
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeE 193 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEE 193 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887765443
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.64 E-value=6.9e-16 Score=149.89 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=51.9
Q ss_pred HHcCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 572 ILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 572 I~~lP~G~dT~vge~~LSGGQkQRIaIARALl----k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+.-+|+|-.|++ ||||||||++||||+. ++|+++|+||||++||+++.+.+.+.+.+
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~ 143 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKE 143 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 667899999988 9999999999999984 79999999999999999999999987543
No 399
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=2.8e-16 Score=184.14 Aligned_cols=161 Identities=22% Similarity=0.394 Sum_probs=132.2
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHhcceEEEccCCccc-cc
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 540 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~g 540 (637)
..+|+|+|.-++||+.+-+.||.|||||||++.|+|-.+-. .|+|.+||++.+++.. ++.++|.+|+...| ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 46899999999999999999999999999999999877642 5699999999999887 88999999877766 78
Q ss_pred cHHHHHhcCC--CCC---CC-HHHHHHHHHHcCHHHH---HHcCCCCcccccCC---CCCChHHHHHHHHHHHHcCCCCE
Q 006650 541 DIKSNIMYGC--PKD---VK-NEDIEWAAKQAYVHEF---ILSLPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 541 TI~eNI~~g~--~~~---~~-de~v~~A~~~a~l~~f---I~~lP~G~dT~vge---~~LSGGQkQRIaIARALlk~p~I 608 (637)
|+||-|-|.. .-. .+ -++-+..+ ...|+ |-.|....||.||. +++|||||.|+++|-++..++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~---~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~ 281 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLA---AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHH---HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcce
Confidence 9999997752 111 11 11222221 12232 23677889999998 49999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~il 631 (637)
+..||+|-+||+.|.-++.+++.
T Consensus 282 ~~~De~t~GLDSsTal~iik~lr 304 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKALR 304 (1391)
T ss_pred eeeecccccccHHHHHHHHHHHH
Confidence 99999999999999999999864
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.64 E-value=5.6e-16 Score=161.71 Aligned_cols=166 Identities=26% Similarity=0.385 Sum_probs=122.3
Q ss_pred cCCCcEEEEEEEEECCCC-----------------------CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 445 RLMGHVQFVNISFHYPSR-----------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~-----------------------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
...+.+.|+||+-.|.+. -+.++|+|+||+|+||+.++|||+|||||||++++++|+
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 345567888887766210 113589999999999999999999999999999999985
Q ss_pred --------CCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHH
Q 006650 502 --------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFI 572 (637)
Q Consensus 502 --------y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~d-e~v~~A~~~a~l~~fI 572 (637)
|.|++|.|.+--..+.-.-+.+ -||.+=.-||.|-+.= ...| ..-.+.++.+|+.|-+
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~~a~iPge---------~Ep~f~~~tilehl~s----~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTVSALIPGE---------YEPEFGEVTILEHLRS----KTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hhcccccccCCCCCceeccccchhhccCcc---------cccccCchhHHHHHhh----ccCchhHHHHHHHhhccchhh
Confidence 7899999987443222221111 2444445678887631 2222 3345567788877654
Q ss_pred HcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 573 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 573 ~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
.-- .. =+.||-|||-|..||+++-..|.+++.||.-|.||..|..+|...|
T Consensus 500 lyR-----r~--f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArki 550 (593)
T COG2401 500 LYR-----RK--FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKI 550 (593)
T ss_pred hhh-----cc--HhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHH
Confidence 420 00 1479999999999999999999999999999999999999998886
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.61 E-value=2.1e-15 Score=149.37 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=81.9
Q ss_pred ccceeEEeeCCC-EEEEEcCCCCcHHHHHHHHh--------cCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccc
Q 006650 468 LNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538 (637)
Q Consensus 468 L~~isl~I~~Ge-~vAIVG~SGsGKSTL~~LL~--------r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 538 (637)
..++||++++|+ +++|+||+|||||||++.|. |++-|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999988 5555532111 2333333311
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 006650 539 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (637)
Q Consensus 539 ~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaL 618 (637)
.++ ..+.+.. +-..+|+|+|||..|++++ .+|+++++||||++|
T Consensus 78 --------~lg------------------~~~~l~~---------~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 78 --------DIG------------------DEQSIEQ---------SLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred --------ecC------------------chhhhhc---------CcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 111 0001110 1147999999999999995 899999999999999
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 006650 619 DSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 619 D~~tE~~I~~~il~~l~~ 636 (637)
|+++...+...+++.+.+
T Consensus 122 D~~~~~~i~~~~l~~l~~ 139 (200)
T cd03280 122 DPVEGAALAIAILEELLE 139 (200)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999887766676654
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.59 E-value=4.1e-15 Score=148.60 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=93.0
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hc-----ceEEEccCCcccccc-
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE-----KIGFVGQEPQLLQMD- 541 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~-----~I~~V~Qd~~LF~gT- 541 (637)
+++.++..+| ..+|+|++|||||||+..|.-..-..... .+ +.-..+++ +. .|-+..+.. +..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~---r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LG---RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---cc---cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4455555444 66899999999999999876433211110 00 00011111 11 111111110 000
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccccc-CCCCCChHHHHHHHHHHH----HcCCCCEEEEeCCCC
Q 006650 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DDDLLSGGQKQRIAIARA----ILRDPAILLLDEATS 616 (637)
Q Consensus 542 I~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~v-ge~~LSGGQkQRIaIARA----Llk~p~ILILDEaTS 616 (637)
-.+|+++- .+.+.+.+++..... |.+.++|.+.+..- ....||||||||.++|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23344322 356778888888666 66678887765431 124899999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 006650 617 ALDSESEHYVKANTLDS 633 (637)
Q Consensus 617 aLD~~tE~~I~~~il~~ 633 (637)
+||+.+.+.+.+.+.+.
T Consensus 160 ~LD~~~~~~i~~~l~~~ 176 (213)
T cd03277 160 GMDPTNERKVFDMLVET 176 (213)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999987543
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.54 E-value=5.4e-15 Score=146.21 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=84.4
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccc-cccHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 543 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~ 543 (637)
.+|++|++++ +|+.++|+||||||||||++.|.+..- +..+|.++..- .++.|...+| +.|++
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 3688888776 479999999999999999999976332 22366655321 2556654444 77899
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
||+..+. ....+++.+ +.+.++.+. +++|+++|+||||+++|+.+.
T Consensus 78 d~l~~~~--s~~~~e~~~------~~~iL~~~~--------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGI--SYFYAELRR------LKEIVEKAK--------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hcccccc--ChHHHHHHH------HHHHHHhcc--------------------------CCCCeEEEEecccCCCCHHHH
Confidence 9998872 222233221 233333321 079999999999999999998
Q ss_pred HHHHHHHHHHhhc
Q 006650 624 HYVKANTLDSLLQ 636 (637)
Q Consensus 624 ~~I~~~il~~l~~ 636 (637)
..+...+++.+.+
T Consensus 124 ~~l~~~ll~~l~~ 136 (199)
T cd03283 124 QAASAAVLKFLKN 136 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 8887766676654
No 404
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.54 E-value=1.6e-14 Score=138.83 Aligned_cols=160 Identities=24% Similarity=0.307 Sum_probs=124.2
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCCHHHHhcc----eEEEccCCc
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRWLREK----IGFVGQEPQ 536 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~----p~~G~I~idG~di~~i~~~~lR~~----I~~V~Qd~~ 536 (637)
..+.+++|++++.||+-++||+||||||-++|.++|... .+..+..+|+.|+-.++++..|+. |++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 458999999999999999999999999999999999875 457788899999999999998876 568999986
Q ss_pred cccc-------cHHHHHhcCCC-------CCCCHHHHHHHHHHcCHHHH--HH-cCCCCcccccCCCCCChHHHHHHHHH
Q 006650 537 LLQM-------DIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEF--IL-SLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 537 LF~g-------TI~eNI~~g~~-------~~~~de~v~~A~~~a~l~~f--I~-~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
=--+ -+-+||-...- -.-...+-.+.+..+|+.|- |+ +-| ..|--||-|++-||
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP---------~ElTeGE~QKVMIA 170 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP---------YELTEGECQKVMIA 170 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc---------chhccCcceeeeee
Confidence 4322 24456632200 01234555667777877543 22 323 35778889999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
-|+..+|++||-||||.++|+.|..+|...+ ..+
T Consensus 171 ~A~AnqPrLLIADEPTN~~e~~Tq~QifRLL-s~m 204 (330)
T COG4170 171 IALANQPRLLIADEPTNSMEPTTQAQIFRLL-SRL 204 (330)
T ss_pred hhhccCCceEeccCCCcccCccHHHHHHHHH-HHh
Confidence 9999999999999999999999999998853 443
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=3.7e-14 Score=147.45 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk----~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.|||||+||+++||+++. +|+++||||||++||+++...+.+.+.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~ 219 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE 219 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 599999999999997653 9999999999999999999999998643
No 406
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=9.2e-14 Score=144.01 Aligned_cols=160 Identities=18% Similarity=0.255 Sum_probs=100.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----------------------------------------CC
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----------------------------------------SD 506 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----------------------------------------~~ 506 (637)
+++.++++.+| .++|+|+|||||||++..|.-+... ..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34566777776 6889999999999998765422111 11
Q ss_pred ceEEECCEeCCC-CCHHHHhcceEEEccCCccccccHHHHHhcCCC--CCCCH------HHHHHHHHHcCHHHHHHcCCC
Q 006650 507 GQIYIDGFPLTD-LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKN------EDIEWAAKQAYVHEFILSLPC 577 (637)
Q Consensus 507 G~I~idG~di~~-i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~d------e~v~~A~~~a~l~~fI~~lP~ 577 (637)
.++.+||..++. -+...+-..|.+.|++..|+.++=.+-..+-+. ..... ++..++.++- .+.. +-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~--~~~~-~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQR--NALL-KGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--HHHh-CCCC
Confidence 145677877765 223344455777888888886654444333210 01111 1122222211 1111 1354
Q ss_pred Cccccc--CC----CCCChHHHHHHHHHHHH---------cCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 578 GYETLV--DD----DLLSGGQKQRIAIARAI---------LRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 578 G~dT~v--ge----~~LSGGQkQRIaIARAL---------lk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.-|..+ .+ +-+|+||+||++|||+| +++|++++|||||++||+.....+.+.+.
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~ 236 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIE 236 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhh
Confidence 444433 33 25899999999999997 48999999999999999999998888763
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.50 E-value=1e-13 Score=132.65 Aligned_cols=109 Identities=25% Similarity=0.310 Sum_probs=76.2
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE-EEccCCccccccHHHHHhcCC
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGC 550 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~gTI~eNI~~g~ 550 (637)
++.+.+|..+.|+||+||||||+++.+.-..-..+|.+.-.. +. +.+ .++++..-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344556679999999999999999997655544545444310 00 111 122222111
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHH
Q 006650 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYV 626 (637)
Q Consensus 551 ~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk----~p~ILILDEaTSaLD~~tE~~I 626 (637)
..-..+|||||+||+++||+|.+ +|+++|+|||++++|++....+
T Consensus 72 -------------------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 -------------------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -------------------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 00001299999999999999986 7899999999999999999999
Q ss_pred HHHHHHHh
Q 006650 627 KANTLDSL 634 (637)
Q Consensus 627 ~~~il~~l 634 (637)
.+.+.+.+
T Consensus 121 ~~~l~~~~ 128 (162)
T cd03227 121 AEAILEHL 128 (162)
T ss_pred HHHHHHHH
Confidence 99877654
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.47 E-value=5.9e-14 Score=148.43 Aligned_cols=159 Identities=27% Similarity=0.354 Sum_probs=101.6
Q ss_pred EEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCEeCCCCCHH
Q 006650 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR 522 (637)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~-----------idG~di~~i~~~ 522 (637)
++..+|..+ ...|..+= +.++|++++|+|++|-||||-+|+|+|...|+=|+-- +-|..+++|=.+
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 567788532 23444333 3679999999999999999999999999999977521 011111111100
Q ss_pred HHh------cceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHH
Q 006650 523 WLR------EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (637)
Q Consensus 523 ~lR------~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQ 594 (637)
-+- .++-||.-=|..+.|+++|=+.--. +.-..++.++.| |++-.++. +.|||||-|
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d-------------e~g~~devve~l--~L~nvl~r~v~~LSGGELQ 220 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD-------------ERGKFDEVVERL--GLENVLDRDVSELSGGELQ 220 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhh-------------hcCcHHHHHHHh--cchhhhhhhhhhcCchHHH
Confidence 000 1223344445566666666554221 111233334333 23333332 489999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|+|||-|++|+++++++|||||-||-...-.+-+.|
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~I 256 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHH
Confidence 999999999999999999999999987665555544
No 409
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.47 E-value=6.1e-14 Score=142.94 Aligned_cols=142 Identities=18% Similarity=0.192 Sum_probs=95.7
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCCCCCHHHHhcce--EEEccCCccccccHHHHHh
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKI--GFVGQEPQLLQMDIKSNIM 547 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di~~i~~~~lR~~I--~~V~Qd~~LF~gTI~eNI~ 547 (637)
=+.|.+||+++|+|++|+|||||++.+.+..+...+ .+.+-...-+..+..++.+.+ .+|-.+.. .+-...+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~---~~~~~~~~ 86 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD---EPPERHVQ 86 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC---CCHHHHHH
Confidence 357999999999999999999999999999887643 333322222235666666665 11111110 11111111
Q ss_pred cCCCCCCCHHHHHHHHH---HcC-----HHHHHHcCCCCcccccCC--CCCChHH--------HHHHHHHHHHcCCCCEE
Q 006650 548 YGCPKDVKNEDIEWAAK---QAY-----VHEFILSLPCGYETLVDD--DLLSGGQ--------KQRIAIARAILRDPAIL 609 (637)
Q Consensus 548 ~g~~~~~~de~v~~A~~---~a~-----l~~fI~~lP~G~dT~vge--~~LSGGQ--------kQRIaIARALlk~p~IL 609 (637)
.. ..+.+.++ ..| +-|-+.++|++|++++|+ ..+|||| |||+++||+++++++|.
T Consensus 87 ~~-------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 87 VA-------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HH-------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 11 01111111 111 235677899999999987 3899999 99999999999999999
Q ss_pred EEeCCCCCCCHHHHHH
Q 006650 610 LLDEATSALDSESEHY 625 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~ 625 (637)
+| ||+++|+.+|..
T Consensus 160 ~l--~T~~~d~~~~~~ 173 (249)
T cd01128 160 II--ATALVDTGSRMD 173 (249)
T ss_pred Ee--eeheecCCCccc
Confidence 99 999999888765
No 410
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=1.8e-13 Score=169.44 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=83.6
Q ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHH------HHHHHHHHcCCCCEE
Q 006650 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQ------RIAIARAILRDPAIL 609 (637)
Q Consensus 537 LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQ------RIaIARALlk~p~IL 609 (637)
.|+||++|||++ + ++++++ ..|++.+++++|+..+|+| ||.++. ++||||||| |+|||||++++|++|
T Consensus 1153 ~~~~~~~~~i~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-R-SDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-C-CCCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 499999999999 4 477766 7899999999999999999 999987 599999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Q 006650 610 LLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|||||++||+.+...+.+.+.+
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~ 1250 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVE 1250 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999887644
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=1.5e-13 Score=138.24 Aligned_cols=110 Identities=23% Similarity=0.220 Sum_probs=82.0
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE-EEccCCccccccHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 543 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~gTI~ 543 (637)
..+.+|+++++++|++++|.|||||||||+++.+.- -.+..++| +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 468999999999999999999999999999999981 24455666 6777642211 11
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCCC
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSAL 618 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL--lk~p~ILILDEa---TSaL 618 (637)
|+| ....+++|.+ .+++|+|++|+..+|+++ +.+|+++||||| |+++
T Consensus 74 ~~i----------------l~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI----------------LARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee----------------Eeeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 111 1111221111 357999999999999999 999999999999 9999
Q ss_pred CHHHHHH
Q 006650 619 DSESEHY 625 (637)
Q Consensus 619 D~~tE~~ 625 (637)
|..+...
T Consensus 126 D~~~~~~ 132 (222)
T cd03285 126 DGFGLAW 132 (222)
T ss_pred HHHHHHH
Confidence 9887754
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=7.4e-13 Score=131.39 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=83.4
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE-EEccCCccccccHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 543 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~gTI~ 543 (637)
..+.+|+++++++|+.++|+|||||||||+++.+.+.. +..++| +||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46999999999999999999999999999999998873 222333 222111 111333
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
|||. ..+..+-+..-+.+.+|+|+||+- .+-++..+|+++|||||++++|+..-
T Consensus 73 d~I~-------------------------~~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLL-------------------------SRLSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hhee-------------------------EecCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHH
Confidence 3331 111111111112347999999764 45557889999999999999999887
Q ss_pred HHHHHHHHHHhhc
Q 006650 624 HYVKANTLDSLLQ 636 (637)
Q Consensus 624 ~~I~~~il~~l~~ 636 (637)
..+...+++.+.+
T Consensus 127 ~~l~~~il~~l~~ 139 (204)
T cd03282 127 FAISLAILECLIK 139 (204)
T ss_pred HHHHHHHHHHHHh
Confidence 7776667776653
No 413
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=1.6e-12 Score=129.93 Aligned_cols=142 Identities=23% Similarity=0.319 Sum_probs=85.2
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCCCC-----------------CCceEEECCEeCCCC-CHHHHhcceEEEccC-Cc--c
Q 006650 480 VVAIVGLSGSGKSTFV-NLLLRLYEP-----------------SDGQIYIDGFPLTDL-DIRWLREKIGFVGQE-PQ--L 537 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~-~LL~r~y~p-----------------~~G~I~idG~di~~i-~~~~lR~~I~~V~Qd-~~--L 537 (637)
+++++|++|||||||+ +++.|.+++ +.|.+.+.+.|...- ....+|. +++.+. .. .
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~--~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD--GYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH--HHhccCCEEEEE
Confidence 6999999999999999 689988765 568888888887431 1122221 122111 11 2
Q ss_pred cccc-----------------HHHHHh---cCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCCh--HHHH
Q 006650 538 LQMD-----------------IKSNIM---YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSG--GQKQ 594 (637)
Q Consensus 538 F~gT-----------------I~eNI~---~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSG--GQkQ 594 (637)
|+.| ..+|+. .|+.-|..+.++. .+. .++.... |.. .-+ ...+| -|+|
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~---~~~~~~~--~~~--~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQ---ITFHRKK--NLQ--YYDISAKSNYNFEKP 159 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHH---HHHHHHc--CCE--EEEEeCCCCCCHHHH
Confidence 2322 112321 2322121111111 011 1122221 211 112 23333 4999
Q ss_pred HHHHHHHHcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEAT-----SALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaT-----SaLD~~tE~~I~~~il~ 632 (637)
++.|||+++++|+++++|||| ++||+.+.+.+.+.+.+
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~ 202 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA 202 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999998643
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.36 E-value=2e-12 Score=128.21 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=74.3
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r-~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
.+..| +++.+|++++|+|||||||||+++.+.+ .+.++.|...- ..+..+++..|....|.. .+
T Consensus 19 ~~~~~--~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~~--~d 83 (202)
T cd03243 19 FVPND--INLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIGA--ED 83 (202)
T ss_pred eEeee--EEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEecC--cc
Confidence 45554 4555899999999999999999999993 33222221100 012233333222211110 00
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 006650 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (637)
Q Consensus 545 NI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~ 624 (637)
++. + +-..++++++| ++.+-++..+|+++|+||||+++|+....
T Consensus 84 ~i~-----------------------------~------~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~ 127 (202)
T cd03243 84 SIS-----------------------------D------GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGL 127 (202)
T ss_pred ccc-----------------------------C------CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHH
Confidence 100 0 01245666655 77777888999999999999999999888
Q ss_pred HHHHHHHHHhhc
Q 006650 625 YVKANTLDSLLQ 636 (637)
Q Consensus 625 ~I~~~il~~l~~ 636 (637)
.+...+++.+.+
T Consensus 128 ~l~~~ll~~l~~ 139 (202)
T cd03243 128 AIAYAVLEHLLE 139 (202)
T ss_pred HHHHHHHHHHHh
Confidence 887776666543
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.26 E-value=2e-11 Score=150.61 Aligned_cols=57 Identities=30% Similarity=0.477 Sum_probs=48.2
Q ss_pred CcccccCC--CCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 578 GYETLVDD--DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 578 G~dT~vge--~~LSGGQkQRIaIARALlk~---p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
||=+ +|. ..|||||.|||-||.-|.++ +.++||||||.+|++..-+++.+. ++.|..
T Consensus 1689 gYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~-l~~L~~ 1750 (1809)
T PRK00635 1689 GYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ-LRTLVS 1750 (1809)
T ss_pred Ceee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH-HHHHHh
Confidence 4433 365 38999999999999999987 789999999999999999999887 566654
No 416
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.23 E-value=4.1e-11 Score=134.90 Aligned_cols=48 Identities=29% Similarity=0.503 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 587 LLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p---~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
.|||||.|||-||.-|.|.+ -+.||||||-+|-.+--+++++. ++.|.
T Consensus 822 TLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~V-L~rLv 872 (935)
T COG0178 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEV-LHRLV 872 (935)
T ss_pred cccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHH-HHHHH
Confidence 89999999999999999997 99999999999999998888886 46554
No 417
>PRK00064 recF recombination protein F; Reviewed
Probab=99.20 E-value=1.5e-10 Score=124.81 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHH---------cCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAI---------LRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARAL---------lk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.+|+||+|+++||++| .++||||+||||+|.||++....+.+.+.
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~ 326 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLK 326 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHh
Confidence 6899999999999988 48999999999999999999988888653
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.19 E-value=7.3e-11 Score=121.76 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=56.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhcceEEEccCCccccccHHHH
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSN 545 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~-~~~lR~~I~~V~Qd~~LF~gTI~eN 545 (637)
+.++|+|++|||||||++.|+|++.|++|+|.++|+++..++ ..+++..++++||+..--..++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 689999999999999999999999999999999999998776 5688888999999753323345444
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.17 E-value=1.5e-10 Score=122.03 Aligned_cols=147 Identities=23% Similarity=0.407 Sum_probs=101.6
Q ss_pred EECCCCCCcCcccceeEEeeCCC-----EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEE
Q 006650 457 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (637)
Q Consensus 457 F~Y~~~~~~~vL~~isl~I~~Ge-----~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (637)
++||+- ...+.+..|.|+.|+ .+...|++|-||||++++++|..+|++|. ++..+ +++|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 678853 357899999999996 57889999999999999999999998762 22333 34555
Q ss_pred ccCCc-cccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCE
Q 006650 532 GQEPQ-LLQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 532 ~Qd~~-LF~gTI~eNI~~g-~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~p~I 608 (637)
||..- -|.+|+|.=+.=- +....+..=+-++.+...+++.+++ | .+|||||.||+|||-+|=|.+++
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dq----------evq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQ----------EVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhH----------HhhcCCchhhHHHHHHHhcCCCCce
Confidence 55432 5677777643100 0001112222333333333333332 2 48999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKA 628 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~ 628 (637)
.+.|||.+-||+|.....-.
T Consensus 478 YliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred EEecCchhhcChHHHHHHHH
Confidence 99999999999987644333
No 420
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.14 E-value=3e-11 Score=131.14 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=56.8
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCCHHHHhcceEEEccCC
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (637)
.+|+|||+++++||.++|+||||||||||++ .++..|++| +|.+||+++...+..+++..= +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4899999999999999999999999999999 778888888 799999999877655433222 888875
No 421
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.13 E-value=3.9e-07 Score=95.12 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc
Q 006650 144 AAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFD 223 (637)
Q Consensus 144 ~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~ 223 (637)
.....+.+..+-+.........|...+........++++..+++.....++......+....+-..+.++.++-. .||.
T Consensus 39 ~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~ 117 (281)
T PF06472_consen 39 RVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYR 117 (281)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHh
Confidence 333334444433333333333444445444444444555555555555555544444444455555555555555 5555
Q ss_pred ccC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 006650 224 TEA----VGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL-SALLICSFLSIIVSVYGQYQKRA 298 (637)
Q Consensus 224 ~~~----~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~l-v~l~~~~l~~~i~~~~~~~~~~~ 298 (637)
-.. ...-=+|++.|++...+........++..++.++...+.+...+..++. ++++...+..++...+++...++
T Consensus 118 l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l 197 (281)
T PF06472_consen 118 LNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRL 197 (281)
T ss_pred hhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 332 2344579999999999988888888888888888888888777766666 55555566667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 006650 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (637)
Q Consensus 299 ~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (637)
..+.++..++.........++.+.|-.++.|+.|.++.++..++..+...+..
T Consensus 198 ~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~ 250 (281)
T PF06472_consen 198 NAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLI 250 (281)
T ss_pred HHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999988888776655543
No 422
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.13 E-value=1.5e-10 Score=123.79 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccccCCCcEEEEEEEEECCCCCCcCccc-----------ceeEEeeCCCEEEEE
Q 006650 416 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIV 484 (637)
Q Consensus 416 ~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vAIV 484 (637)
+.-.+.+|++++++.++.+.. .+....+.|+|+||+|.||+. ..+|+ |+++.|.+||+++||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred eccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 444678999999998765322 122345789999999999964 37897 999999999999999
Q ss_pred cCCCCcHHHHHHHHhcCCCCC
Q 006650 485 GLSGSGKSTFVNLLLRLYEPS 505 (637)
Q Consensus 485 G~SGsGKSTL~~LL~r~y~p~ 505 (637)
||+|||||||+++|.+.+...
T Consensus 175 G~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCCChhHHHHHHHHhhccc
Confidence 999999999999999998754
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=3.4e-10 Score=113.26 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=81.0
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
.|-+|+++.=..+.+++|+||+|+||||+++.+.. .. ++.|...... .-.++|..|...-+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l----- 79 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRM----- 79 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeee-----
Confidence 56777776522238999999999999999999983 23 5566654421 23567777753222
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
+..++ +.+ +...| .-+-||+++|+++..+|+++|||||++++|+...
T Consensus 80 -----~~~~s-----i~~-----~~S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 80 -----SSRES-----VSS-----GQSAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred -----CCccC-----hhh-----ccchH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 10111 100 00112 3466999999999999999999999999999876
Q ss_pred HHHHHHHHHHhh
Q 006650 624 HYVKANTLDSLL 635 (637)
Q Consensus 624 ~~I~~~il~~l~ 635 (637)
..+..++++.+.
T Consensus 127 ~~~~~ail~~l~ 138 (213)
T cd03281 127 AGLLIATIEHLL 138 (213)
T ss_pred HHHHHHHHHHHH
Confidence 666666666664
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.11 E-value=3.1e-10 Score=132.80 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=89.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCC-CEEEEEcCCCCcHHHHHHHHhcC-CCCCCceEEECCEeCCCCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~G-e~vAIVG~SGsGKSTL~~LL~r~-y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.|.++|+..-+-..+ .+| .+|+++.+| +.++|+||||+||||++|.+.+. +-++.|
T Consensus 295 ~i~l~~~rhPll~~~-~~v--p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------- 352 (771)
T TIGR01069 295 KIILENARHPLLKEP-KVV--PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------- 352 (771)
T ss_pred CEEEccccCceecCC-ceE--eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-------------------
Confidence 577777665322110 112 267778877 99999999999999999999886 333333
Q ss_pred ceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
.+||.+... .-.+.+++.. +..++ +-+.+ +-..+|+|++|+..|++++ .+|
T Consensus 353 --~~Vpa~~~~-~~~~~d~i~~----~i~~~------------~si~~---------~LStfS~~m~~~~~il~~~-~~~ 403 (771)
T TIGR01069 353 --IPIPANEHS-EIPYFEEIFA----DIGDE------------QSIEQ---------NLSTFSGHMKNISAILSKT-TEN 403 (771)
T ss_pred --CCccCCccc-cccchhheee----ecChH------------hHHhh---------hhhHHHHHHHHHHHHHHhc-CCC
Confidence 144443310 0012233211 11111 01110 1146999999999999987 789
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 607 AILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
+++|||||++++|+..-..+..++++.+.+
T Consensus 404 sLvLlDE~g~GtD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 404 SLVLFDELGAGTDPDEGSALAISILEYLLK 433 (771)
T ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998878887754
No 425
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.10 E-value=1.7e-10 Score=115.70 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.6
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.|.+|++++.++ ++++|+|||||||||+++.+.+..
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 589999999887 999999999999999999997643
No 426
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.09 E-value=1.5e-06 Score=94.27 Aligned_cols=249 Identities=11% Similarity=0.043 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHH
Q 006650 166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVI 245 (637)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~ 245 (637)
|...+.........++++...+..+..++..+...+...-+.+.+.++.++.. ..| .-=+|+..|+....+..
T Consensus 133 d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~~t 205 (409)
T PRK11098 133 TIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFASTL 205 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHHHH
Confidence 43444443434444444444444555554444433333444444455555443 112 13479999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 246 GNDINMILRNSLQGAGAFINLLTLSWPL-------------TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNV 312 (637)
Q Consensus 246 ~~~l~~l~~~~l~~v~~~i~l~~~sw~l-------------~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (637)
.+....++.++++.+..+.+++.+|..+ ..++++...+-.++..++|++..++.-+.++..++....
T Consensus 206 l~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~ 285 (409)
T PRK11098 206 ENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKE 285 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHH
Confidence 7777788888888888888888877653 333333333444445566777777766666655555444
Q ss_pred HHHHHchHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHH
Q 006650 313 AQETLCMMRTVRVYGTEE-KELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLT 391 (637)
Q Consensus 313 ~~E~l~g~~~Ik~f~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~ 391 (637)
+.-.=++.+ +.|. ...++|++..+++.+.-.+. ...+.++. ...+...++-+.+.+-....|++|.|.++
T Consensus 286 LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~-~~l~~f~~---~y~~~~~i~P~iv~aP~y~aG~ItlG~l~ 356 (409)
T PRK11098 286 LVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHY-MYFNIARI---LYLQVDNVFGLFLLFPSIVAGTITLGLMT 356 (409)
T ss_pred HhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 432222222 1121 23344444444444433322 22222222 22233444455556777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006650 392 KYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (637)
Q Consensus 392 a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~ 430 (637)
.......++..++..+.+.+.++.+-....+|+.++.+.
T Consensus 357 Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 357 QITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999988764
No 427
>PRK12369 putative transporter; Reviewed
Probab=99.06 E-value=4.1e-06 Score=88.96 Aligned_cols=250 Identities=11% Similarity=0.014 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHH
Q 006650 168 MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN 247 (637)
Q Consensus 168 ~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~ 247 (637)
..+......+.+++++..++..+..++..+...+...-+-+.+.++.+..+- ..|+. | +|+..|++...+....
T Consensus 60 ~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~iDNP---D--QRI~EDi~~f~~~tl~ 133 (326)
T PRK12369 60 GDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-NIEGS---S--QRIQEDTYRFAKIMES 133 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCc---c--HhHHHHHHHHHHHHHH
Confidence 3343333333344444444444455444444333334444444555554321 11221 2 7999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 248 DINMILRNSLQGAGAFINLLTLSWPLT------------LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQE 315 (637)
Q Consensus 248 ~l~~l~~~~l~~v~~~i~l~~~sw~l~------------lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E 315 (637)
....++.++++.+..+.+++.+|..+. .++++...+..++..++|++..++.-+.++..++..-.+.-
T Consensus 134 l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvr 213 (326)
T PRK12369 134 LGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVY 213 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHh
Confidence 788888888888888888887774332 22333333444455566766666655555544444333221
Q ss_pred HHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHH
Q 006650 316 TLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVL 395 (637)
Q Consensus 316 ~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~ 395 (637)
.=++.+. +.......++|.+..+...+.-.+. ...+.++... .....++-+.+.+-....|+++.|.++....
T Consensus 214 vre~ae~---~~E~~~l~~~f~~v~~n~~~~~~~~-~~l~~~~~~y---~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~ 286 (326)
T PRK12369 214 AEDDKKN---YAKPETLIELFTGLRFNYFRLFLHY-GYFNIWLISF---SQMMVIVPYLIMAPGLFAGVITLGVLMQISN 286 (326)
T ss_pred hccchhh---hhhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH---HHHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 1011111 1111223344444444433333322 2223333222 2233444455566777899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006650 396 YCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (637)
Q Consensus 396 ~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~ 430 (637)
...++..++..+.+.+.++.+-.+..+|+.++.+.
T Consensus 287 AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 287 AFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999889999999988763
No 428
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.05 E-value=2.9e-10 Score=114.04 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHH----HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIA----RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRIaIA----RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.||||||-+++|| ..-++++|++||||+.++||..+...+.+.|.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~ 185 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKE 185 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999987 444688999999999999999999999887643
No 429
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=7.1e-10 Score=116.85 Aligned_cols=162 Identities=21% Similarity=0.373 Sum_probs=94.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-c-CCCCCCceEEECCEeCCCCCHHHH--
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-R-LYEPSDGQIYIDGFPLTDLDIRWL-- 524 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-r-~y~p~~G~I~idG~di~~i~~~~l-- 524 (637)
+|.++|.+.+-.+ ...+.|-||+|-.|..+++|||+|-|||||++-|. | |--|..=.+++-.+.+.-=+...+
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 4778887777654 35789999999999999999999999999998886 3 333333333333322211000000
Q ss_pred -----hcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHH---HHHcC-------HHHHHHcCCCCcccccCCC---
Q 006650 525 -----REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA---AKQAY-------VHEFILSLPCGYETLVDDD--- 586 (637)
Q Consensus 525 -----R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A---~~~a~-------l~~fI~~lP~G~dT~vge~--- 586 (637)
.++..+.--+.. +..-|--| . ..-.|++.++ ++..| +...+.. -|++-..-++
T Consensus 341 vl~aD~kRl~lLeee~~-----L~~q~e~G-d-~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAK-----LMSQIEEG-D-TTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTT 411 (807)
T ss_pred HHHhhHHHHHHHHHHHH-----HHHHHHcC-c-hHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcc
Confidence 000111000000 00111112 1 1112223222 22222 1222222 2455555443
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~t 622 (637)
.+|||=|-|+++||||+-+|-+|.|||||.+||-..
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNA 447 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA 447 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccce
Confidence 899999999999999999999999999999999764
No 430
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.93 E-value=4.9e-10 Score=111.07 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=89.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHH
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
++|++++|+||||||||||+++|++.++ |..|+ +||.|+..++.+.+++.+ .|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 6899999999999999999999999986 88899 699999999999988854 688889999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHH----------cCHHHHHHcCCCCcccccC--------C----C-CCChHH-HHHHHHH
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQ----------AYVHEFILSLPCGYETLVD--------D----D-LLSGGQ-KQRIAIA 599 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~----------a~l~~fI~~lP~G~dT~vg--------e----~-~LSGGQ-kQRIaIA 599 (637)
+| .||. ..+.+.++++. .+...+.+.+|+++--.+- + + .-|.-+ ++|+.-+
T Consensus 78 ~~-~y~~----~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~ 152 (205)
T PRK00300 78 GN-YYGT----PRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKA 152 (205)
T ss_pred Cc-cccC----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 88 4662 34556655433 3345666666654211111 1 1 245444 4566555
Q ss_pred HHHc---CCCCEEEEe
Q 006650 600 RAIL---RDPAILLLD 612 (637)
Q Consensus 600 RALl---k~p~ILILD 612 (637)
+.-. +.++.+|-+
T Consensus 153 ~~~~~~~~~~d~vi~n 168 (205)
T PRK00300 153 REEIAHASEYDYVIVN 168 (205)
T ss_pred HHHHHhHHhCCEEEEC
Confidence 4433 457888753
No 431
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.92 E-value=9.4e-10 Score=107.61 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 586 DLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk--~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
+.+|+|.+| +++++.+ +|+++|+||||+++|++....+...+++.+.+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~ 109 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE 109 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 468888777 5555555 99999999999999999888888777777654
No 432
>PRK14079 recF recombination protein F; Provisional
Probab=98.91 E-value=1e-08 Score=110.16 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 587 ~LSGGQkQRIaIARALl---------k~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
-+|+||++++++|+.|. .+||+++||||||.||.+....+.+.+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l 315 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALA 315 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHH
Confidence 58999999999999998 899999999999999999988888765
No 433
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.85 E-value=5.6e-09 Score=113.78 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=93.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.++-++++-.|+.. ..+++++ +++.+||+++|+|+||+|||||++.|+|.++|+.|.|.+.|..-+
T Consensus 130 ~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~----------- 195 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR----------- 195 (432)
T ss_pred chheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence 46667777777643 3588885 999999999999999999999999999999999888877664432
Q ss_pred EEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccccc-CCCCCChHHHHHHHHHHHHc----
Q 006650 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DDDLLSGGQKQRIAIARAIL---- 603 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~v-ge~~LSGGQkQRIaIARALl---- 603 (637)
+++|.+. ..++..++. +-+.+ .-..-|.|+|+|.+.+.+.+
T Consensus 196 ------------ev~e~~~-------------~~l~~~gl~---------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 196 ------------EVKDFIR-------------KELGEEGMR---------KSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred ------------cHHHHHH-------------HHhhhcccc---------eeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 2333321 011111110 01122 33578999999999999988
Q ss_pred ---CCCCEEEEeCCCCCCCHHHH
Q 006650 604 ---RDPAILLLDEATSALDSESE 623 (637)
Q Consensus 604 ---k~p~ILILDEaTSaLD~~tE 623 (637)
.++-++++||+|...|+..|
T Consensus 242 r~~G~~VLlilDslTr~a~A~re 264 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADARRS 264 (432)
T ss_pred HHcCCcEEEEecchHHHHHHHHH
Confidence 78999999999999999855
No 434
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=7.5e-09 Score=122.70 Aligned_cols=49 Identities=29% Similarity=0.379 Sum_probs=44.3
Q ss_pred CCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p--~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
..|||||+||++|||||..+| +++||||||++||+++...+.+.+ ++|.
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L-~~L~ 536 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTL-KRLR 536 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHH-HHHH
Confidence 489999999999999999986 899999999999999999999975 4443
No 435
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.82 E-value=1.2e-10 Score=134.49 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 303 QECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 377 (637)
Q Consensus 303 ~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~ 377 (637)
....+..++.+.|.+.++.+||..+.|......| .....+..+.+.+..............+......+++++|+
T Consensus 36 ~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~ 115 (644)
T PRK10733 36 TFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGV 115 (644)
T ss_pred HHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHH
Confidence 3344566777888899999999999888665555 44444444444333222222222223333345567888999
Q ss_pred HHHHhCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCcEEEEE
Q 006650 378 MSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVN 454 (637)
Q Consensus 378 ~lv~~g~it~G---~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~n 454 (637)
++++.|+++.| .+++|..+...+..+ ..+...+.++.....+.+|+.++.+...+. ...
T Consensus 116 ~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~------~~~----------- 177 (644)
T PRK10733 116 WIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREP------SRF----------- 177 (644)
T ss_pred HHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH------HHH-----------
Confidence 99999999998 788888777777666 444555666666666777777776642210 000
Q ss_pred EEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 455 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 455 VsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
+++..++++| +.|+||+|+||||+++.+++....
T Consensus 178 --------------~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 178 --------------QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred --------------HhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 1112256667 999999999999999999987654
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=1.3e-08 Score=102.29 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=42.6
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEE
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYI 511 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r-~y~p~~G~I~i 511 (637)
..+.+|+++++++|++++|.||+|+||||+++.+.+ .+.++.|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999999999999999 77888887544
No 437
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.79 E-value=8.5e-09 Score=112.51 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=71.8
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC---CEeCCCCCHHHH
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID---GFPLTDLDIRWL 524 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id---G~di~~i~~~~l 524 (637)
+.++.++|+..|..+ ..+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 568999999999754 46898886 999999999999999999999999999999999999885 566665554433
Q ss_pred ----hcceEEEccCC
Q 006650 525 ----REKIGFVGQEP 535 (637)
Q Consensus 525 ----R~~I~~V~Qd~ 535 (637)
++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35799999976
No 438
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.79 E-value=1.3e-08 Score=120.83 Aligned_cols=49 Identities=29% Similarity=0.381 Sum_probs=44.4
Q ss_pred CCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p--~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
..|||||||||+|||||..+| +++||||||++||++....+.+.+ ++|.
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L-~~L~ 538 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETL-KHLR 538 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHH-HHHH
Confidence 389999999999999999997 999999999999999999999875 4444
No 439
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.78 E-value=5.2e-09 Score=110.57 Aligned_cols=140 Identities=24% Similarity=0.313 Sum_probs=90.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----------------CHHHHhc--ceEEEccCCcc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----------------DIRWLRE--KIGFVGQEPQL 537 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i----------------~~~~lR~--~I~~V~Qd~~L 537 (637)
.||+..++||.+|-||||-++.|+|-.+|+-|.-- ++-+.+++ ..+.++. +.-||.|=|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 58999999999999999999999999999877521 11111110 0011111 11234444444
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 006650 538 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (637)
Q Consensus 538 F~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~p~ILILDEaTS 616 (637)
-.+++.+++.-- .+.+...++++..+++...++ | +.||||+-||.|||-+-.+++++.++|||.|
T Consensus 177 ~k~~v~~~l~~~----~~r~~~~~~~~~~~L~~~~~r----------e~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 177 VKGTVGSLLDRK----DERDNKEEVCDQLDLNNLLDR----------EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHH----hhcccHHHHHHHHHHhhHHHh----------hhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 555555555321 011233334444444333322 3 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 006650 617 ALDSESEHYVKANT 630 (637)
Q Consensus 617 aLD~~tE~~I~~~i 630 (637)
-||.....+-...|
T Consensus 243 YLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 243 YLDVKQRLKAAITI 256 (592)
T ss_pred cchHHHhhhHHHHH
Confidence 99998766555544
No 440
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.77 E-value=4.8e-08 Score=107.25 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=98.6
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe---CCC-----CCHHHHhcceEEEccCCc
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP---LTD-----LDIRWLREKIGFVGQEPQ 536 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d---i~~-----i~~~~lR~~I~~V~Qd~~ 536 (637)
..+++++ +++++|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.+ +.+ ++.+.+++.|.+|.+-.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 3589999 9999999999999999999999999999999999999996554 443 35556788888887432
Q ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCC-hHHHHH-HHHHHHHcCCCCEEEEeCC
Q 006650 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS-GGQKQR-IAIARAILRDPAILLLDEA 614 (637)
Q Consensus 537 LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LS-GGQkQR-IaIARALlk~p~ILILDEa 614 (637)
+..-+++..+.-...+.|+..+ +|.|..+==.+++ --|-|| |++ ++.+|| +
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl---~~ge~P------~ 276 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGL---AVGEPP------T 276 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHH---hcCCCC------c
Confidence 2234566665555566777775 5888866322222 122233 233 235676 8
Q ss_pred CCCCCHHHHHHHHHHH
Q 006650 615 TSALDSESEHYVKANT 630 (637)
Q Consensus 615 TSaLD~~tE~~I~~~i 630 (637)
|+++|+..-..+.+.+
T Consensus 277 ~~G~dp~~~~~l~~ll 292 (438)
T PRK07721 277 TKGYTPSVFAILPKLL 292 (438)
T ss_pred cccCCHHHHHHHHHHH
Confidence 9999999988877753
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.74 E-value=7.7e-08 Score=97.42 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=39.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHH-HHHHhcCCCCCCceEEEC
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYID 512 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL-~~LL~r~y~p~~G~I~id 512 (637)
.|..++++..+++ .+++|+.+.|+|++||||||+ .+++.++.++....+++.
T Consensus 7 ~~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 7 ELSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred EEEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4667777766653 279999999999999999999 699999877544444443
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=98.73 E-value=5.9e-09 Score=112.17 Aligned_cols=133 Identities=21% Similarity=0.200 Sum_probs=95.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHH
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 546 (637)
-++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|.+++..... ...++++.+++|+.++|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4566666789999999999999999999999999999999999998754433 3346789999999999999888898
Q ss_pred hcCCCCC---CCHHHHHHHHHHcCHHHHHHcCCCCc--ccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 547 MYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGY--ETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 547 ~~g~~~~---~~de~v~~A~~~a~l~~fI~~lP~G~--dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
.+..... ....++.+.++.+..++....-..|- ..-+.+++|| ++|..--+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 8773211 11235555555555443322222221 1112234776 8999998888876
No 443
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.71 E-value=5.6e-05 Score=75.30 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=118.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR 205 (637)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~ 205 (637)
..|+|++.+...+.+.+.-.+..+..|.+.+.++++...++.. ....+.++.+...+.+..|...-.++..++..+
T Consensus 4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~----~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~ 79 (237)
T PF13748_consen 4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVW----QALMYAALVLLMWAIGAARRIYDTRVFSRIYAE 79 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHH
Confidence 4578899999999999999999999999999888765544321 112233333334444555655555543333333
Q ss_pred HHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006650 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (637)
Q Consensus 206 lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~ 285 (637)
+-..++-+-. .++.+++.+..|++ =..++-+++-..++.++.+++.+++++++++.++.++++..++...++.
T Consensus 80 la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~ 152 (237)
T PF13748_consen 80 LAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFL 152 (237)
T ss_pred HhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322222 34567888999984 5677888999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006650 286 IIVSVYGQYQKRASVLTQEC 305 (637)
Q Consensus 286 ~i~~~~~~~~~~~~~~~~~~ 305 (637)
.+...|.++..+...+..+.
T Consensus 153 ~i~~~f~~~~~~L~~~LNnr 172 (237)
T PF13748_consen 153 LILPRFARRNYRLYRRLNNR 172 (237)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 77776766665555544443
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.71 E-value=2.6e-08 Score=117.11 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=80.7
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE-EEccCCccccccHHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKS 544 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~gTI~e 544 (637)
.|-+|+++. +.+..+.|.|||++||||+++.+.- ..+-.++| +||-+.. -.-++.+
T Consensus 316 ~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl---------------------~~~maq~G~~vpa~~~-~~i~~~~ 372 (782)
T PRK00409 316 VVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGL---------------------AALMAKSGLPIPANEP-SEIPVFK 372 (782)
T ss_pred eECceeEEC-CCceEEEEECCCCCCcHHHHHHHHH---------------------HHHHHHhCCCcccCCC-ccccccc
Confidence 455666654 3467899999999999999998841 22233333 4444420 0112223
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 006650 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (637)
Q Consensus 545 NI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~ 624 (637)
+|... ..|+ +-|.+ +-..+|+|++|+..|+|++ .+|+++|||||++++|+....
T Consensus 373 ~i~~~----ig~~------------~si~~---------~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ 426 (782)
T PRK00409 373 EIFAD----IGDE------------QSIEQ---------SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGA 426 (782)
T ss_pred eEEEe----cCCc------------cchhh---------chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHH
Confidence 33110 0000 00110 1246999999999999999 889999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 006650 625 YVKANTLDSLLQ 636 (637)
Q Consensus 625 ~I~~~il~~l~~ 636 (637)
.+..++++.+.+
T Consensus 427 ala~aile~l~~ 438 (782)
T PRK00409 427 ALAISILEYLRK 438 (782)
T ss_pred HHHHHHHHHHHH
Confidence 998888877654
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.68 E-value=2.6e-07 Score=83.53 Aligned_cols=98 Identities=39% Similarity=0.494 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 555 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 555 (637)
+|..+.|+||+||||||+++.|++...... +.+.++.....+.......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478999999999999999999999887765 5677766554443333222
Q ss_pred HHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 006650 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKA 628 (637)
Q Consensus 556 de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~ 628 (637)
.....+ ....+++.++..+++|-..+|.++++||+....+.........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHh
Confidence 111112 3688999999999999999999999999999999988776543
No 446
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.65 E-value=1.8e-08 Score=115.15 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=57.3
Q ss_pred HHHHHHHHcCHHHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHHc----------CCCCEEEEeCCC-CCC
Q 006650 558 DIEWAAKQAYVHEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SAL 618 (637)
Q Consensus 558 ~v~~A~~~a~l~~fI~~lP~G~dT~vge--------~~LSGGQkQRIaIARALl----------k~p~ILILDEaT-SaL 618 (637)
.+.+.++..+. ++...+|+|+++.+++ ..||||||||++||||+. .+|+++|||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34445554443 4555678888888853 279999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHH
Q 006650 619 DSESEHYVKANT 630 (637)
Q Consensus 619 D~~tE~~I~~~i 630 (637)
|+++...+.+.+
T Consensus 511 d~~~~~~~~~~l 522 (562)
T PHA02562 511 DAEGTKALLSIL 522 (562)
T ss_pred chhHHHHHHHHH
Confidence 999999998865
No 447
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=2.6e-08 Score=108.64 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=63.9
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc---eEEECCEeCCCCCHHHH------hcceEEEccCCc
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG---QIYIDGFPLTDLDIRWL------REKIGFVGQEPQ 536 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G---~I~idG~di~~i~~~~l------R~~I~~V~Qd~~ 536 (637)
.+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||.-
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 589999 99999999999999999999999999999999864 44445556655554544 557999999987
Q ss_pred cc-cccHHHHHh
Q 006650 537 LL-QMDIKSNIM 547 (637)
Q Consensus 537 LF-~gTI~eNI~ 547 (637)
.+ .-+..+|..
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 66 345666653
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.62 E-value=1.2e-07 Score=100.28 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=41.9
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 006650 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 471 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~ 521 (637)
+++.+++|+.++|+|++||||||+++.|+++++|..|.+.++ |..++..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~ 185 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFL 185 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCC
Confidence 457788999999999999999999999999999999988885 4444443
No 449
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.62 E-value=4.8e-08 Score=104.98 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=68.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CC-ceEEECCEeCCCCCHHHHhcceEEEccCC-----ccccccHHHHHh
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLLQMDIKSNIM 547 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~-----~LF~gTI~eNI~ 547 (637)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....|+ ++..+.+++..++|.|.. .-|...|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 33 4676666565 588888877788898874 369999999998
Q ss_pred cCCCCC-----C-CHHHHHHHHHHc
Q 006650 548 YGCPKD-----V-KNEDIEWAAKQA 566 (637)
Q Consensus 548 ~g~~~~-----~-~de~v~~A~~~a 566 (637)
.. |+- + +.|.+..|++.+
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHHH
Confidence 75 421 2 445566677773
No 450
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.59 E-value=5.5e-08 Score=95.20 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=60.7
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcc--c-cccHH
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL--L-QMDIK 543 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L--F-~gTI~ 543 (637)
..+=+.+.+++|+.++|+|++||||||+++.|+++++|+.|.|.+++.+-..+. .+..++++.|+... + ..|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455566789999999999999999999999999999999999999875433332 24567777766532 2 35777
Q ss_pred HHHhc
Q 006650 544 SNIMY 548 (637)
Q Consensus 544 eNI~~ 548 (637)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77754
No 451
>PRK08149 ATP synthase SpaL; Validated
Probab=98.57 E-value=1.1e-07 Score=103.79 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=61.7
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCCCCHHHHh----cceEEEccCC
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR----EKIGFVGQEP 535 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~di~~i~~~~lR----~~I~~V~Qd~ 535 (637)
.+++++ +++.+||+++|+|+||+|||||++.|+|.++++. |.|..+|.+++++..+.++ +++++|....
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 589999 9999999999999999999999999999999988 9999999999988777765 6677776554
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.49 E-value=8.6e-08 Score=106.02 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=50.1
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhc
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~ 548 (637)
+.++.+++|+++++|||+|+||||++..|++.|.+..|. ++|++|++|+ |.-+..||+.+
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHH
Confidence 344456789999999999999999999999988777664 2789999998 77778999975
No 453
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.42 E-value=1.9e-07 Score=90.56 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc-ceEEEccCCc-cccccHHHHHhcC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQEPQ-LLQMDIKSNIMYG 549 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~-~I~~V~Qd~~-LF~gTI~eNI~~g 549 (637)
+||.++|+|+|||||||+++.|.+++.| +.+||.++.. ...+|+ ..++.+|+.. +...+..+|+.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999987 6899988753 233443 3566666643 2345555666543
No 454
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.42 E-value=2.8e-07 Score=90.16 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (637)
.|+.++|+||||||||||+++|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3889999999999999999999999876 5889998888777777888999999984
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.41 E-value=3.5e-07 Score=90.48 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=61.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHHhcceEEEcc-----CCccccccHHHHHhcCCCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQ-----EPQLLQMDIKSNIMYGCPKD 553 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~i~~~~lR~~I~~V~Q-----d~~LF~gTI~eNI~~g~~~~ 553 (637)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++ ++.... ..+++.| ++.-|...++.+++.. | +
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E~~~~~---~~~~i~q~~vg~~~~~~~~~i~~aLr~~-p-d 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-EFVHES---KRSLINQREVGLDTLSFENALKAALRQD-P-D 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-cccccC---ccceeeecccCCCccCHHHHHHHHhcCC-c-C
Confidence 58999999999999999999888754 67877766666 333222 3345555 6778999999999986 4 5
Q ss_pred C-------CHHHHHHHHHHcC
Q 006650 554 V-------KNEDIEWAAKQAY 567 (637)
Q Consensus 554 ~-------~de~v~~A~~~a~ 567 (637)
. ++|.+..+++.+.
T Consensus 77 ~ii~gEird~e~~~~~l~~a~ 97 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAE 97 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 4 6777777777664
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.41 E-value=1.6e-07 Score=90.91 Aligned_cols=78 Identities=29% Similarity=0.378 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHH
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 545 (637)
|++++|+||||||||||++.|++.++ |..|+ ++|++..-++.+.+.+.+ .++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 34444 467676666767766654 57778888878777
Q ss_pred HhcCCCCCCCHHHHHHHHHH
Q 006650 546 IMYGCPKDVKNEDIEWAAKQ 565 (637)
Q Consensus 546 I~~g~~~~~~de~v~~A~~~ 565 (637)
.|| .+.+.+.++++.
T Consensus 76 -~y~----~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 -YYG----TPKSPVEEALAA 90 (180)
T ss_pred -eeC----CcHHHHHHHHHC
Confidence 366 234556555544
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.39 E-value=6.4e-07 Score=84.10 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=61.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v 559 (637)
+++|.|++|+||||+++-+++...+..|.|.+-+.+... ...+ ++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh----------
Confidence 378999999999999999999887766776554432211 1111 110000
Q ss_pred HHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 006650 560 EWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (637)
Q Consensus 560 ~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~t 622 (637)
. .....++..-.... ..-+.++.++++.+++...+|+++|+||+++-+|...
T Consensus 50 ---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~ 102 (165)
T cd01120 50 ---------S--LKGALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALR 102 (165)
T ss_pred ---------h--hccccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHH
Confidence 0 00001111111111 2345566678899999999999999999997666554
No 458
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.36 E-value=1.9e-06 Score=86.37 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=73.2
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
..|.+|++|++++|++++|.||+|+||||+++.+....-. +.|-- + +-+ +..++++. ..+.+..-.
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-v---pa~-------~~~i~~~~--~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-V---PAK-------SMRLSLVD--RIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-c---Ccc-------ccEecccc--EEEEecCcc
Confidence 4789999999999999999999999999999987654211 11110 0 000 01122111 111111223
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
||+.-| . +.-.. |-+|++-.=....+|.+++|||+.+++|+...
T Consensus 84 d~~~~~-~-StF~~----------------------------------e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKG-E-STFMV----------------------------------ELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccC-c-chHHH----------------------------------HHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 333222 0 11111 22332211111246899999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 006650 624 HYVKANTLDSLLQ 636 (637)
Q Consensus 624 ~~I~~~il~~l~~ 636 (637)
..+..++++.|.+
T Consensus 128 ~~la~ail~~L~~ 140 (218)
T cd03286 128 YAIAHAVLEYLVK 140 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.35 E-value=3.7e-07 Score=90.04 Aligned_cols=109 Identities=16% Similarity=0.229 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHH-----HHhcCCCCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS-----NIMYGCPKDV 554 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e-----NI~~g~~~~~ 554 (637)
++||+|+|||||||+++.|.+.+ .+|.+.+- ++|.+...-+-.+ +..++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~-------------------~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVII-------------------SQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEE-------------------EecccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999988 33444433 3333222111111 1223322222
Q ss_pred CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 006650 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621 (637)
Q Consensus 555 ~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~ 621 (637)
+.+.+.+.++. +. .|-....---+.|.|++++-.+ .+++++++|+|++.+..++.
T Consensus 60 ~~~~~~~~l~~-----l~----~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQD-----LK----NGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHH-----HH----CCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 33333332222 21 1211111112667777776544 57889999999999998754
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.34 E-value=2.3e-07 Score=86.25 Aligned_cols=73 Identities=26% Similarity=0.420 Sum_probs=58.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-------------CCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHh
Q 006650 481 VAIVGLSGSGKSTFVNLLLRLYEP-------------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (637)
Q Consensus 481 vAIVG~SGsGKSTL~~LL~r~y~p-------------~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 547 (637)
++|+||||||||||+++|++.+++ ..|+ +||++..-++.++.++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4454 58888888898888874 568889999999988 5
Q ss_pred cCCCCCCCHHHHHHHH
Q 006650 548 YGCPKDVKNEDIEWAA 563 (637)
Q Consensus 548 ~g~~~~~~de~v~~A~ 563 (637)
||. ..+++.++.
T Consensus 76 yg~----~~~~i~~~~ 87 (137)
T cd00071 76 YGT----SKAAVEEAL 87 (137)
T ss_pred ecC----cHHHHHHHH
Confidence 772 345555544
No 461
>PLN02796 D-glycerate 3-kinase
Probab=98.32 E-value=2.2e-07 Score=98.23 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=53.7
Q ss_pred CcccceeEEe---eCCCE-----EEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHhc
Q 006650 466 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 466 ~vL~~isl~I---~~Ge~-----vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~i~~~~lR~ 526 (637)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+...+.+.+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5788999888 78887 9999999999999999999999875 688999999988777777766
No 462
>PRK13695 putative NTPase; Provisional
Probab=98.30 E-value=1.1e-06 Score=85.01 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDE--ATSALDSESEHYVKAN 629 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDE--aTSaLD~~tE~~I~~~ 629 (637)
.+||+++-++.+++..+++|+++++|| ++..+|....+.+.+.
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~ 122 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEV 122 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHH
Confidence 699999999999999999999999999 5555665554444443
No 463
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.29 E-value=1.2e-06 Score=87.54 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p---~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
.+|.|+||.++|+-+|+..+ .++++|||-++|++...+.+.+.+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l 282 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELL 282 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHH
Confidence 56999999999999998876 999999999999999999988765
No 464
>PRK15494 era GTPase Era; Provisional
Probab=98.29 E-value=5.4e-07 Score=96.54 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=50.5
Q ss_pred ccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCC-------EEEEEcCCCCcHHHHHHHHhcC
Q 006650 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE-------VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge-------~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+...|.++++||+|+||.. .++++++++++++|+ +++|||.+|+|||||++-|.+-
T Consensus 13 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 13 EEFKGDTEALAAAVREDAS--TGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hhhCCccccccccccCCCC--cccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567899999999999943 579999999999999 9999999999999999998865
No 465
>PRK10869 recombination and repair protein; Provisional
Probab=98.29 E-value=9.2e-07 Score=100.54 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk----~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.+||||+||++|||+++. +|+++||||||++||..+...+.+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~ 478 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLR 478 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 599999999999999996 689999999999999999999998753
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.28 E-value=1.4e-06 Score=84.52 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE-----------CCEeCCCCCHHHHh-----cceEEEccCCcccccc
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWLR-----EKIGFVGQEPQLLQMD 541 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i-----------dG~di~~i~~~~lR-----~~I~~V~Qd~~LF~gT 541 (637)
|+.++|+|+|||||||+++.|++.+.+. |.+.+ +|.++...+.+... +.++.+.|...++.|+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6889999999999999999999988654 65544 77777777766653 3599999998777664
No 467
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.27 E-value=6.8e-07 Score=97.92 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=74.1
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEE---CCEeCCCCCHHHHh---cceEEE-----cc
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYI---DGFPLTDLDIRWLR---EKIGFV-----GQ 533 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~i---dG~di~~i~~~~lR---~~I~~V-----~Q 533 (637)
.+++++ |++.+||+++|+|+||+|||||++.|+|..++ ..|.|.+ .|.++.++..+.++ .+.++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 468887 99999999999999999999999999998844 4467777 45777766666555 335566 99
Q ss_pred CC------ccccccHHHHHhcCCCCCC-----CHHHHHHHHHHcCH
Q 006650 534 EP------QLLQMDIKSNIMYGCPKDV-----KNEDIEWAAKQAYV 568 (637)
Q Consensus 534 d~------~LF~gTI~eNI~~g~~~~~-----~de~v~~A~~~a~l 568 (637)
+| .....+|+|.++.- ..++ +..+..+|++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~-g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQ-GKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHc-CCCcchhhhHHHHHHHHHHHhCc
Confidence 76 33667788888643 1232 34566777777776
No 468
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.27 E-value=1.3e-06 Score=87.06 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=47.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc---cH--HHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM---DI--KSNIMYGC 550 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g---TI--~eNI~~g~ 550 (637)
+++.+|||+|+||||||||++.|.+.+. ...+++++||.+.++. +. +.+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4788999999999999999999999871 2468888888887755 23 33444553
Q ss_pred CCCCCHHHHHHHHHH
Q 006650 551 PKDVKNEDIEWAAKQ 565 (637)
Q Consensus 551 ~~~~~de~v~~A~~~ 565 (637)
+...+.+.+.+.++.
T Consensus 63 ~~~~~~~~l~~~l~~ 77 (209)
T PRK05480 63 PDAFDHDLLIEHLKA 77 (209)
T ss_pred cccccHHHHHHHHHH
Confidence 333344555544433
No 469
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.26 E-value=4.2e-07 Score=90.45 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=27.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
|+|+++||+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999864
No 470
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.25 E-value=1.1e-06 Score=100.38 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~----p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.+||||+||++|||+++.. |+++||||||++||+.+...+.+.+.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~ 488 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLA 488 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 6999999999999999875 69999999999999999999998753
No 471
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.24 E-value=0.01 Score=61.91 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 178 VLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSL 257 (637)
Q Consensus 178 ~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l 257 (637)
..++++..++..+..++..+.-.+-...+.....++..+. ++.-.--+|+..|+-+..+.+-..-..++.++.
T Consensus 63 ~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~sim 135 (315)
T PF05992_consen 63 LWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIM 135 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555544444444555555556666555 233334679999999988877777777788887
Q ss_pred HHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q 006650 258 QGAGAFINLLTLSWPLT-------------LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVR 324 (637)
Q Consensus 258 ~~v~~~i~l~~~sw~l~-------------lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik 324 (637)
+.+..+-+++.+|-.+. .++++...+-.++..+.|.+...+....|+..+...+.+ +-|=.. .
T Consensus 136 tliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeL---V~gED~-~ 211 (315)
T PF05992_consen 136 TLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKEL---VYGEDD-A 211 (315)
T ss_pred HHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHH---HhcCcc-c
Confidence 77777766665543222 122222222233344555555555544444444443322 111111 1
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHH
Q 006650 325 VYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404 (637)
Q Consensus 325 ~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~ 404 (637)
-....+...+.|.+..+.+++.-.+.. ....+ .....+...+..+.+.+-.+..|.+|.|.+........++..+.
T Consensus 212 ~ra~~~tl~eLF~~Vr~Ny~rly~hy~-yfni~---~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sf 287 (315)
T PF05992_consen 212 NRAQPPTLRELFSNVRRNYFRLYFHYM-YFNIA---RISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSF 287 (315)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 122333344555555555555544432 12222 12222333344455556667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006650 405 WRMVDNLSSLLQSIGATEKVFQLI 428 (637)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~ri~~~l 428 (637)
+.+.+.+.++.+-....+|+.++-
T Consensus 288 q~lv~~W~tivEL~Si~kRL~~FE 311 (315)
T PF05992_consen 288 QYLVNSWTTIVELRSIYKRLRAFE 311 (315)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999888889998774
No 472
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.24 E-value=2.8e-06 Score=97.85 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--------eEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--------~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 549 (637)
.+.+.|+||+|+||||+++++.++..+..| -|.+||.++. .+...+. |-.+|
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhcC
Confidence 456999999999999999999999875544 4888887763 3333321 22233
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 006650 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKA 628 (637)
Q Consensus 550 ~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~ 628 (637)
..++...+...+.++..++.++.. |- ..+||| +|+||| +..||......+.+
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~----------g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKT----------GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhc----------CchhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 111000111222233333322111 11 257888 999999 89999999888887
Q ss_pred HH
Q 006650 629 NT 630 (637)
Q Consensus 629 ~i 630 (637)
.+
T Consensus 288 ~L 289 (615)
T TIGR02903 288 VL 289 (615)
T ss_pred HH
Confidence 75
No 473
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.23 E-value=8.3e-07 Score=87.73 Aligned_cols=56 Identities=29% Similarity=0.361 Sum_probs=46.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCHHHHhcceEEEccCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (637)
++|++++|+|+||||||||+++|.+.+.+ ..|.+.+||.++++ .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 68999999999999999999999986654 45789999987763 3344688888886
No 474
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.15 E-value=1e-05 Score=82.05 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=65.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHh-cCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 552 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~-r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 552 (637)
-+|+|..+.|.|++||||||++..++ +... +.+ .+.|+..|-. ...+.+|.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~-------------------~~~y~~~e~~--~~~~~~~~------ 72 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK-------------------KVYVITTENT--SKSYLKQM------ 72 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC-------------------EEEEEEcCCC--HHHHHHHH------
Confidence 58999999999999999999998775 2222 222 3333333211 01222222
Q ss_pred CCCHHHHHHHHHHcCH--HHHHHcCCCCccccc----CC-CCCChHHHHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHH
Q 006650 553 DVKNEDIEWAAKQAYV--HEFILSLPCGYETLV----DD-DLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESE 623 (637)
Q Consensus 553 ~~~de~v~~A~~~a~l--~~fI~~lP~G~dT~v----ge-~~LSGGQkQRIaIARALlk--~p~ILILDEaTSaLD~~tE 623 (637)
+..+. .+++. +|+-..+ .+ ...|.++++.+..++..++ +|+++++||+|+.+|..+.
T Consensus 73 -----------~~~g~~~~~~~~---~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~ 138 (234)
T PRK06067 73 -----------ESVKIDISDFFL---WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE 138 (234)
T ss_pred -----------HHCCCChhHHHh---CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH
Confidence 22221 11111 1111111 11 2457789999999999998 8999999999976554433
Q ss_pred HHH
Q 006650 624 HYV 626 (637)
Q Consensus 624 ~~I 626 (637)
..+
T Consensus 139 ~~~ 141 (234)
T PRK06067 139 DDI 141 (234)
T ss_pred HHH
Confidence 333
No 475
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.13 E-value=2.1e-06 Score=93.78 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=49.9
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
..+++++ +++.+|++++|+|+||+|||||+++|++..+++.|.|.+.|.+-+++
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev 178 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREV 178 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHH
Confidence 4589999 99999999999999999999999999999999999999999877654
No 476
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.11 E-value=1.2e-05 Score=78.10 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=33.9
Q ss_pred CCCChHHHH-----HHHHHHH-HcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHh
Q 006650 586 DLLSGGQKQ-----RIAIARA-ILRDPAILLLDEATSALD---SESEHYVKANTLDSL 634 (637)
Q Consensus 586 ~~LSGGQkQ-----RIaIARA-Llk~p~ILILDEaTSaLD---~~tE~~I~~~il~~l 634 (637)
..+|+||+| +..+.++ .-.+|+++|+||+|+.+| ......+.+. ++.+
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l-~~~l 126 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRL-LFAL 126 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHH-HHHH
Confidence 378999999 3444444 556899999999999999 5555555543 3443
No 477
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.11 E-value=6.8e-06 Score=77.15 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHH-----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARA-----ILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 587 ~LSGGQkQRIaIARA-----Llk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
.++++++++.....+ ....++++ +||++|.++-..+.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 578998888765554 24556766 99999999999998886543
No 478
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=4.3e-06 Score=91.51 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=68.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCCCCHH---HHhcceEEEccCCccccc
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIR---WLREKIGFVGQEPQLLQM 540 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~di~~i~~~---~lR~~I~~V~Qd~~LF~g 540 (637)
+++-+ |++.+||+++|+|+||+|||||++.|+|+.+|+. |.|..+|.++.++-.+ .-....++|.|+.
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~----- 238 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP----- 238 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC-----
Confidence 44333 9999999999999999999999999999999986 9999999988663211 1123466666654
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccccc
Q 006650 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583 (637)
Q Consensus 541 TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~v 583 (637)
.++..-+++..+.-..-+.|+..+ +|.|-.+
T Consensus 239 ----------ad~~~~~r~~~~~~a~tiAEyfrd--~G~~Vll 269 (455)
T PRK07960 239 ----------ADVSPLLRMQGAAYATRIAEDFRD--RGQHVLL 269 (455)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHH--cCCCeEE
Confidence 112234555544444455566664 4666644
No 479
>PRK01156 chromosome segregation protein; Provisional
Probab=98.06 E-value=5.2e-06 Score=100.25 Aligned_cols=46 Identities=35% Similarity=0.512 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHH------HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 586 DLLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 586 ~~LSGGQkQRIaI------ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
..||||||||+|| ||+++.+|++++|||||++||+++...+.+.+.
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~ 851 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIE 851 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHH
Confidence 3899999999965 599999999999999999999999988877653
No 480
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.04 E-value=4.3e-06 Score=88.47 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=48.0
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+..-|.+-+++
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev 110 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREV 110 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccH
Confidence 4589999 99999999999999999999999999999999999888866554443
No 481
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.04 E-value=3.2e-06 Score=89.63 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=55.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC------CCHHHHhcceEEEccCCcccc-ccHHHHHh
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIRWLREKIGFVGQEPQLLQ-MDIKSNIM 547 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~------i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~ 547 (637)
++|+++++|||+||||||++.-|++.+.+..|+|.+.+.|... +....-|..+.+++|+..... .++.+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999998888743 223344666889988654433 23455554
No 482
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.03 E-value=5e-06 Score=84.15 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=41.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce----EEECCEeCCCCCHHHHhcceEEEccCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ----IYIDGFPLTDLDIRWLREKIGFVGQEP 535 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~----I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (637)
++..++||.|+||||||||++.|.+...+++|. |.+|+.. ...+.+...+++++..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~----~~~~~~~~~g~~~~~~ 90 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH----LDNAVLDAHGLRPRKG 90 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc----CCHHHHHhcccccccC
Confidence 456799999999999999999999999999998 5555422 1233445566666543
No 483
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.02 E-value=9.8e-06 Score=80.26 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=46.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (637)
+++|+|++|||||||++.+.+.+.+..| +.+-..|........+.+..++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999888655 44444566666667777788999998765
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.02 E-value=2.2e-06 Score=83.76 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCChHHHHHHH--HHHHHcC-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 587 LLSGGQKQRIA--IARAILR-DPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 587 ~LSGGQkQRIa--IARALlk-~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
.+|+||+|++. +++.+-. +++++ ||||+|.++-..+.+.+.+.+.+
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 68999999987 7777654 34443 99999999999999988776654
No 485
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.00 E-value=5e-06 Score=92.85 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=58.0
Q ss_pred EEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
++|++..|+. ..+++++++.+.+|+.++++|++|||||||++.|.|+.+|.+|++.+++..+..+
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred ccCeEEEECc---HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 5688888853 2589999999999999999999999999999999999999999999998877543
No 486
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.00 E-value=3.5e-06 Score=99.00 Aligned_cols=64 Identities=22% Similarity=0.425 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC----------------------------------------------------CCCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY----------------------------------------------------EPSD 506 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y----------------------------------------------------~p~~ 506 (637)
..+||.||+||||||++++|++.+ +|.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 479999999999999999999886 2778
Q ss_pred ceEEECCEeCC-CCCHHHHhcceEEEccCCccccccHHHHHh
Q 006650 507 GQIYIDGFPLT-DLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (637)
Q Consensus 507 G~I~idG~di~-~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 547 (637)
|.|++||.|+. ++..+.+++.++.|.|.|+ ||+|+.
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~-----vr~~l~ 118 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPP-----VRNVLI 118 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHH-----HHHHHH
Confidence 89999999998 8999999999999999998 888874
No 487
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.00 E-value=5.2e-06 Score=91.19 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=49.2
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~ 520 (637)
..+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+...|.+-+++.
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~ 187 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVR 187 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHH
Confidence 3589999 999999999999999999999999999999999999988666555543
No 488
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.00 E-value=2.5e-05 Score=92.96 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=28.1
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
.+|+.......+.|+|+|||||||+++.|+..+.-
T Consensus 448 ~~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~~ 482 (818)
T PRK13830 448 RLNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRR 482 (818)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 44666655557999999999999999998877654
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.99 E-value=3.8e-06 Score=91.91 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
..++.++++-.|..+ ..+++++ ++|.+||+++|+|+||+|||||++.|+|..+|+.|.|.+.|..-+++
T Consensus 128 ~~~~r~~v~~~l~tG--i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 128 PAMVRQPITQPLMTG--IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred CceeccCHhheeCCC--ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 357788888888643 4699999 99999999999999999999999999999999999988877765554
No 490
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.98 E-value=7.1e-06 Score=101.57 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARAL----lk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.||||||||++|||++ +++||++||||||++||+.+...+.+.+.
T Consensus 1089 ~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~ 1137 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLK 1137 (1179)
T ss_pred ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHH
Confidence 7999999999999998 58889999999999999999999988653
No 491
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.96 E-value=1.6e-05 Score=68.44 Aligned_cols=45 Identities=40% Similarity=0.448 Sum_probs=34.5
Q ss_pred CCCChHHHHH-------HHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 586 DLLSGGQKQR-------IAIARAILR------DPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 586 ~~LSGGQkQR-------IaIARALlk------~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
+.+||||||. .|+|-.+-. .+.+++||||++.||+++-..+.+.+
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 4899999964 344444444 27999999999999999998888765
No 492
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.95 E-value=0.00018 Score=86.23 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=30.4
Q ss_pred HHHHHcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHh
Q 006650 598 IARAILRDPAILLLDEATSAL-DSESEHYVKANTLDSL 634 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaL-D~~tE~~I~~~il~~l 634 (637)
|+|++..+|+++++|||++.| |+.+.+.+.+.+ +.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~l-k~~ 716 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWL-KVL 716 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHH-HHH
Confidence 789999999999999999999 688888777764 444
No 493
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.93 E-value=2e-05 Score=77.77 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=65.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v 559 (637)
+++|+|+||+|||||++.|.|...+.+|.+..+..+.. .....+ +++...+-++.|+-.++ ......++.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t--------~~~~~~-~~~~~~~l~l~DtpG~~-~~~~~~~~~ 72 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETT--------MKRTPY-PHPKFPNVTLWDLPGIG-STAFPPDDY 72 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccc--------cCceee-ecCCCCCceEEeCCCCC-cccCCHHHH
Confidence 58999999999999999999999999999888743221 112222 22233455666654444 122222333
Q ss_pred HHHHHHcCHHHHHHcCCCCcccc--cCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 006650 560 EWAAKQAYVHEFILSLPCGYETL--VDDDLLSGGQKQRIAIARAILRDPAILLL 611 (637)
Q Consensus 560 ~~A~~~a~l~~fI~~lP~G~dT~--vge~~LSGGQkQRIaIARALlk~p~ILIL 611 (637)
. +..++ .+.|-. +..+.++.-+++-+...+.. +.|-++++
T Consensus 73 l---~~~~~--------~~~d~~l~v~~~~~~~~d~~~~~~l~~~-~~~~ilV~ 114 (197)
T cd04104 73 L---EEMKF--------SEYDFFIIISSTRFSSNDVKLAKAIQCM-GKKFYFVR 114 (197)
T ss_pred H---HHhCc--------cCcCEEEEEeCCCCCHHHHHHHHHHHHh-CCCEEEEE
Confidence 2 22111 122332 23457888888888877775 44555555
No 494
>PRK03918 chromosome segregation protein; Provisional
Probab=97.93 E-value=1.1e-05 Score=97.28 Aligned_cols=45 Identities=31% Similarity=0.456 Sum_probs=40.5
Q ss_pred CCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQ------RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.|||||+| |+||||++..+|+++||||||++||+.+...+.+.+.
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~ 838 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIME 838 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHH
Confidence 79999999 6667778999999999999999999999999888753
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.91 E-value=5.4e-05 Score=81.34 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEe
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFP 515 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~d 515 (637)
.+++..+.|.||+||||||+++.+.+.+++ .+|+|..-+.+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 467999999999999999999999987764 46777664433
No 496
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.90 E-value=1.4e-05 Score=97.70 Aligned_cols=48 Identities=33% Similarity=0.358 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHHHcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 587 LLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk--------~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
.|||||+||++|||||.. +|++|+|||||++||+++-..+.+.| +.+.
T Consensus 949 ~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l-~~l~ 1004 (1047)
T PRK10246 949 TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDAL-DALN 1004 (1047)
T ss_pred cCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHH
Confidence 899999999999999995 89999999999999999999999874 5553
No 497
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.88 E-value=1.1e-05 Score=83.78 Aligned_cols=54 Identities=28% Similarity=0.448 Sum_probs=41.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (637)
++||+|+|||||||+++.|.++..+..|.+...+ |+..++.+. |+..|+.+|+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HHHhhcccccc
Confidence 4899999999999999999999998877654433 665555444 56677777765
No 498
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.88 E-value=1.1e-05 Score=90.31 Aligned_cols=61 Identities=28% Similarity=0.377 Sum_probs=50.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcccc-ccHHHHHh
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIM 547 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~ 547 (637)
-+|||.|+||||||||++.|.++. |..|.|.+||... ..+.+.+.+|+|.+|+ .++.+||.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~-------~~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND-------SSRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec-------chhhhCccCCChhhcchhHHHHHHH
Confidence 589999999999999999999997 6789999999752 1134678899999886 46878873
No 499
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=1.5e-05 Score=97.77 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 587 LLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk----------~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
.|||||++|++||+||.. +|++|||||||++||+++-..+.+.| +.+
T Consensus 950 ~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l-~~l 1006 (1042)
T TIGR00618 950 TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGIL-DAI 1006 (1042)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHH-HHH
Confidence 799999999999999985 79999999999999999999999875 444
No 500
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.87 E-value=9.1e-06 Score=88.83 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=48.9
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~ 520 (637)
.++ |.+|++.+||+++|+|+||+|||||++.|+|..+|+.|.|.+.|..-+++.
T Consensus 129 ~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~ 182 (418)
T TIGR03498 129 RVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVR 182 (418)
T ss_pred EEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHH
Confidence 456 479999999999999999999999999999999999999999998776654
Done!