Query 006650
Match_columns 637
No_of_seqs 242 out of 2497
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.4E-90 1.9E-94 845.1 68.5 457 176-633 141-600 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 8E-86 2.7E-90 749.8 64.7 510 121-632 12-524 (587)
3 4a82_A Cystic fibrosis transme 100.0 1.7E-85 5.8E-90 746.4 61.2 510 120-631 2-521 (578)
4 3qf4_B Uncharacterized ABC tra 100.0 2.1E-85 7.1E-90 748.2 60.7 513 116-632 21-536 (598)
5 2yl4_A ATP-binding cassette SU 100.0 4E-84 1.4E-88 737.8 71.1 516 117-632 4-528 (595)
6 3b5x_A Lipid A export ATP-bind 100.0 1.2E-83 3.9E-88 732.2 72.1 513 117-632 10-525 (582)
7 4f4c_A Multidrug resistance pr 100.0 2.5E-86 8.4E-91 812.8 50.4 513 120-632 740-1262(1321)
8 3b60_A Lipid A export ATP-bind 100.0 1.5E-83 5.3E-88 731.1 67.4 513 117-632 10-525 (582)
9 3g5u_A MCG1178, multidrug resi 100.0 4.8E-82 1.6E-86 773.1 58.2 512 119-631 34-570 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 2.2E-75 7.6E-80 714.3 51.0 513 120-632 693-1216(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.5E-57 5.1E-62 475.8 20.9 218 412-632 16-235 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.9E-48 6.6E-53 396.2 24.5 183 448-632 6-190 (247)
13 2ghi_A Transport protein; mult 100.0 3.3E-47 1.1E-51 390.0 22.3 183 448-632 16-200 (260)
14 2ixe_A Antigen peptide transpo 100.0 4.7E-47 1.6E-51 391.0 23.3 185 447-632 14-201 (271)
15 1mv5_A LMRA, multidrug resista 100.0 7.2E-48 2.5E-52 391.2 14.2 181 450-632 2-184 (243)
16 3gd7_A Fusion complex of cysti 100.0 4.3E-45 1.5E-49 393.1 19.3 181 447-631 17-199 (390)
17 2pze_A Cystic fibrosis transme 100.0 4.9E-44 1.7E-48 359.8 19.8 168 448-631 5-174 (229)
18 2cbz_A Multidrug resistance-as 100.0 1.4E-43 4.9E-48 358.2 18.6 167 449-631 3-171 (237)
19 3tif_A Uncharacterized ABC tra 100.0 8.5E-44 2.9E-48 359.4 15.6 173 450-632 2-190 (235)
20 3gfo_A Cobalt import ATP-bindi 100.0 5.6E-43 1.9E-47 360.9 16.2 172 449-631 7-187 (275)
21 3tui_C Methionine import ATP-b 100.0 7.4E-43 2.5E-47 371.1 17.4 175 448-631 23-207 (366)
22 1ji0_A ABC transporter; ATP bi 100.0 2E-42 6.9E-47 350.5 19.5 175 449-632 6-184 (240)
23 2pcj_A ABC transporter, lipopr 100.0 2.3E-42 7.9E-47 346.4 16.0 171 449-631 4-184 (224)
24 2olj_A Amino acid ABC transpor 100.0 3.7E-42 1.2E-46 352.7 16.7 172 449-632 24-204 (263)
25 4g1u_C Hemin import ATP-bindin 100.0 4.1E-42 1.4E-46 353.1 17.1 171 449-631 11-191 (266)
26 1vpl_A ABC transporter, ATP-bi 100.0 7E-42 2.4E-46 349.4 17.1 173 447-632 13-191 (256)
27 2yz2_A Putative ABC transporte 100.0 1.5E-41 5.3E-46 349.1 19.1 171 450-632 3-183 (266)
28 2ihy_A ABC transporter, ATP-bi 100.0 7.5E-42 2.6E-46 353.4 15.7 172 449-632 21-206 (279)
29 1g6h_A High-affinity branched- 100.0 9.4E-42 3.2E-46 349.0 16.2 174 449-632 7-198 (257)
30 1sgw_A Putative ABC transporte 100.0 6.8E-42 2.3E-46 340.2 14.5 164 448-632 9-178 (214)
31 1b0u_A Histidine permease; ABC 100.0 1.5E-41 5.1E-46 348.4 17.0 171 449-631 6-197 (262)
32 2bbs_A Cystic fibrosis transme 100.0 1.6E-41 5.4E-46 352.6 17.1 185 423-631 17-203 (290)
33 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-41 4.9E-46 361.0 16.1 174 449-634 4-185 (359)
34 2qi9_C Vitamin B12 import ATP- 100.0 6.2E-41 2.1E-45 341.0 16.7 166 450-632 5-178 (249)
35 3rlf_A Maltose/maltodextrin im 100.0 3.9E-41 1.3E-45 360.1 15.8 170 449-632 3-178 (381)
36 2yyz_A Sugar ABC transporter, 100.0 1.2E-40 4.3E-45 354.7 18.7 170 449-632 3-178 (359)
37 1z47_A CYSA, putative ABC-tran 100.0 1.2E-40 4.1E-45 354.0 17.2 172 448-632 13-190 (355)
38 2onk_A Molybdate/tungstate ABC 100.0 1E-40 3.5E-45 337.7 15.4 166 450-632 2-171 (240)
39 2it1_A 362AA long hypothetical 100.0 9.2E-41 3.1E-45 356.1 15.7 170 449-632 3-178 (362)
40 2d2e_A SUFC protein; ABC-ATPas 100.0 4.2E-41 1.4E-45 342.8 11.9 170 450-631 4-187 (250)
41 1v43_A Sugar-binding transport 100.0 2.6E-40 8.8E-45 353.9 18.3 170 449-632 11-186 (372)
42 3d31_A Sulfate/molybdate ABC t 100.0 2E-40 6.8E-45 352.0 17.2 168 450-632 2-172 (348)
43 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-40 3.8E-45 355.0 14.4 172 449-632 3-185 (353)
44 1g29_1 MALK, maltose transport 100.0 4.4E-40 1.5E-44 352.6 15.2 170 449-632 3-184 (372)
45 2pjz_A Hypothetical protein ST 100.0 3.3E-40 1.1E-44 338.2 12.7 167 450-631 2-172 (263)
46 2nq2_C Hypothetical ABC transp 100.0 7.3E-40 2.5E-44 334.1 14.9 160 449-632 4-173 (253)
47 2zu0_C Probable ATP-dependent 100.0 7.8E-40 2.7E-44 336.5 12.4 175 449-634 20-210 (267)
48 2v9p_A Replication protein E1; 100.0 2.1E-37 7.3E-42 322.6 -14.6 198 379-627 34-233 (305)
49 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-31 1.2E-35 296.8 13.3 160 448-632 268-430 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 4.2E-31 1.4E-35 299.9 11.3 158 449-632 357-516 (607)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 4E-31 1.4E-35 296.8 10.3 156 449-632 287-446 (538)
52 2iw3_A Elongation factor 3A; a 100.0 3.3E-30 1.1E-34 302.5 17.0 160 449-631 671-945 (986)
53 3bk7_A ABC transporter ATP-bin 100.0 4.5E-31 1.6E-35 299.6 8.1 167 449-631 83-272 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-30 3.5E-35 293.5 7.4 166 450-631 21-202 (538)
55 3j16_B RLI1P; ribosome recycli 100.0 2.1E-28 7.2E-33 277.4 13.3 157 452-632 349-512 (608)
56 2iw3_A Elongation factor 3A; a 99.9 1.7E-27 5.6E-32 279.7 19.1 157 448-632 434-593 (986)
57 3j16_B RLI1P; ribosome recycli 99.9 1.6E-28 5.4E-33 278.4 9.1 167 454-635 82-268 (608)
58 3ux8_A Excinuclease ABC, A sub 99.9 6.1E-28 2.1E-32 278.5 7.0 160 465-634 31-250 (670)
59 3ozx_A RNAse L inhibitor; ATP 99.9 2.9E-28 9.9E-33 273.2 3.8 165 453-634 3-184 (538)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.6E-30 2.3E-34 281.1 -17.4 150 449-629 118-283 (460)
61 3ux8_A Excinuclease ABC, A sub 99.9 4.4E-27 1.5E-31 271.3 4.7 158 465-634 335-592 (670)
62 1z6g_A Guanylate kinase; struc 99.9 3.9E-28 1.3E-32 241.9 -11.0 145 466-632 11-172 (218)
63 4aby_A DNA repair protein RECN 99.9 2.1E-25 7.2E-30 242.6 7.8 164 467-632 50-342 (415)
64 2f1r_A Molybdopterin-guanine d 99.9 2.6E-27 8.8E-32 227.1 -8.4 137 479-635 3-161 (171)
65 3pih_A Uvrabc system protein A 99.9 3.3E-24 1.1E-28 251.5 12.7 158 466-635 598-855 (916)
66 3b85_A Phosphate starvation-in 99.9 1.7E-26 5.8E-31 228.4 -6.6 129 466-630 14-143 (208)
67 3aez_A Pantothenate kinase; tr 99.9 3.3E-27 1.1E-31 247.6 -14.4 144 443-619 37-208 (312)
68 2vf7_A UVRA2, excinuclease ABC 99.9 6.3E-24 2.1E-28 247.3 10.0 171 448-634 501-779 (842)
69 1e69_A Chromosome segregation 99.9 1.4E-23 4.7E-28 221.3 10.4 161 470-632 17-268 (322)
70 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.7E-26 9.1E-31 242.7 -12.8 166 384-616 75-251 (330)
71 1tq4_A IIGP1, interferon-induc 99.9 1.1E-25 3.8E-30 243.6 -8.3 143 466-632 37-211 (413)
72 2r6f_A Excinuclease ABC subuni 99.9 1.5E-23 5.1E-28 244.5 8.7 163 449-631 629-892 (972)
73 2ygr_A Uvrabc system protein A 99.9 7.2E-23 2.5E-27 239.6 11.2 166 448-634 646-912 (993)
74 4gp7_A Metallophosphoesterase; 99.9 6.1E-24 2.1E-28 203.4 0.8 116 470-623 1-119 (171)
75 1ye8_A Protein THEP1, hypothet 99.9 4.2E-23 1.4E-27 199.2 1.4 116 480-630 2-126 (178)
76 2gza_A Type IV secretion syste 99.9 1E-25 3.4E-30 241.2 -18.8 222 372-601 51-301 (361)
77 3sop_A Neuronal-specific septi 99.8 1.2E-23 4.2E-28 216.2 -6.5 126 480-624 4-132 (270)
78 2eyu_A Twitching motility prot 99.8 9.7E-24 3.3E-28 215.9 -10.2 156 450-622 6-207 (261)
79 1lw7_A Transcriptional regulat 99.8 3.2E-23 1.1E-27 222.1 -7.8 146 467-615 157-329 (365)
80 3b9q_A Chloroplast SRP recepto 99.8 7E-23 2.4E-27 213.8 -6.8 138 468-624 90-239 (302)
81 2ewv_A Twitching motility prot 99.8 1.6E-23 5.3E-28 225.0 -12.6 146 466-621 126-317 (372)
82 2og2_A Putative signal recogni 99.8 4.7E-22 1.6E-26 211.7 -5.8 137 469-624 148-296 (359)
83 1lvg_A Guanylate kinase, GMP k 99.8 3.4E-23 1.2E-27 203.0 -14.5 137 475-632 1-151 (198)
84 2dpy_A FLII, flagellum-specifi 99.8 6.7E-21 2.3E-25 208.4 -1.2 149 448-630 130-291 (438)
85 1pui_A ENGB, probable GTP-bind 99.8 1E-20 3.4E-25 185.4 -3.1 166 450-634 4-197 (210)
86 1odf_A YGR205W, hypothetical 3 99.8 3.4E-21 1.2E-25 199.9 -8.0 129 476-622 29-169 (290)
87 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 4.2E-18 1.4E-22 182.4 13.4 47 587-634 279-331 (365)
88 3asz_A Uridine kinase; cytidin 99.7 4.7E-21 1.6E-25 188.6 -9.2 132 475-633 3-146 (211)
89 2jeo_A Uridine-cytidine kinase 99.7 4.1E-20 1.4E-24 186.9 -3.2 131 465-621 12-149 (245)
90 2i3b_A HCR-ntpase, human cance 99.7 4.3E-19 1.5E-23 172.7 -2.2 124 478-630 1-132 (189)
91 1znw_A Guanylate kinase, GMP k 99.7 3.5E-19 1.2E-23 175.4 -7.3 140 465-630 9-170 (207)
92 2qag_C Septin-7; cell cycle, c 99.7 2.4E-18 8.1E-23 186.8 -2.4 144 448-623 10-158 (418)
93 2qnr_A Septin-2, protein NEDD5 99.7 2.1E-18 7.1E-23 180.0 -4.2 141 453-623 2-146 (301)
94 2obl_A ESCN; ATPase, hydrolase 99.7 3.4E-17 1.2E-21 173.9 4.8 154 448-634 44-207 (347)
95 2o5v_A DNA replication and rep 99.6 3.7E-16 1.3E-20 166.4 12.2 46 587-632 265-319 (359)
96 1rj9_A FTSY, signal recognitio 99.6 4E-17 1.4E-21 170.3 3.9 130 476-622 100-238 (304)
97 2o8b_B DNA mismatch repair pro 99.6 2.4E-16 8.1E-21 188.0 10.8 138 448-636 749-899 (1022)
98 2qag_B Septin-6, protein NEDD5 99.6 6.4E-17 2.2E-21 175.0 4.1 167 449-634 16-205 (427)
99 1pzn_A RAD51, DNA repair and r 99.6 4.5E-17 1.6E-21 173.3 1.5 123 453-622 111-248 (349)
100 3c8u_A Fructokinase; YP_612366 99.6 5.9E-19 2E-23 173.9 -13.2 132 475-630 19-166 (208)
101 1cr0_A DNA primase/helicase; R 99.6 1.1E-16 3.7E-21 166.0 3.1 134 466-618 23-160 (296)
102 1ewq_A DNA mismatch repair pro 99.6 7E-16 2.4E-20 178.8 9.2 129 447-632 548-686 (765)
103 3szr_A Interferon-induced GTP- 99.6 1.1E-17 3.8E-22 190.4 -6.0 149 449-632 10-179 (608)
104 1tf7_A KAIC; homohexamer, hexa 99.6 1.7E-17 5.9E-22 186.0 -8.1 139 465-634 25-171 (525)
105 2vf7_A UVRA2, excinuclease ABC 99.6 1.7E-15 5.9E-20 176.5 7.9 49 586-635 378-428 (842)
106 2qm8_A GTPase/ATPase; G protei 99.5 4.5E-18 1.5E-22 180.2 -14.6 177 450-633 30-258 (337)
107 1tf7_A KAIC; homohexamer, hexa 99.5 5.1E-16 1.7E-20 174.0 0.9 134 450-629 258-399 (525)
108 4a74_A DNA repair and recombin 99.5 1.2E-15 4E-20 151.2 2.4 107 474-621 21-141 (231)
109 1zp6_A Hypothetical protein AT 99.5 2.9E-16 1E-20 151.5 -2.7 133 474-629 5-143 (191)
110 4ad8_A DNA repair protein RECN 99.5 1.7E-14 5.8E-19 161.4 9.2 46 587-632 396-444 (517)
111 3thx_A DNA mismatch repair pro 99.5 1.4E-13 4.9E-18 162.3 16.7 131 448-636 630-772 (934)
112 3qkt_A DNA double-strand break 99.5 5.9E-14 2E-18 148.7 12.1 46 587-632 248-299 (339)
113 3jvv_A Twitching mobility prot 99.5 9.1E-15 3.1E-19 155.6 5.6 118 453-629 92-217 (356)
114 1w1w_A Structural maintenance 99.5 1.8E-14 6.1E-19 157.5 6.7 45 587-631 333-381 (430)
115 2rcn_A Probable GTPase ENGC; Y 99.5 9.5E-16 3.2E-20 162.7 -3.9 121 466-603 204-329 (358)
116 1p9r_A General secretion pathw 99.5 4.6E-17 1.6E-21 176.8 -14.6 129 467-610 158-314 (418)
117 1nij_A Hypothetical protein YJ 99.5 1.1E-16 3.8E-21 168.1 -11.4 127 479-614 5-166 (318)
118 1htw_A HI0065; nucleotide-bind 99.5 1.9E-15 6.3E-20 142.7 -2.4 89 452-549 10-99 (158)
119 3thx_B DNA mismatch repair pro 99.5 1.6E-14 5.4E-19 170.0 4.3 140 448-635 639-782 (918)
120 2bbw_A Adenylate kinase 4, AK4 99.4 9.4E-16 3.2E-20 154.8 -6.3 133 477-631 26-194 (246)
121 1nlf_A Regulatory protein REPA 99.4 9.9E-14 3.4E-18 142.6 6.4 130 474-630 26-163 (279)
122 2ehv_A Hypothetical protein PH 99.4 3.5E-15 1.2E-19 149.7 -5.8 155 449-634 6-168 (251)
123 2yhs_A FTSY, cell division pro 99.4 1.2E-14 4.3E-19 159.2 -2.3 130 468-622 283-429 (503)
124 1s96_A Guanylate kinase, GMP k 99.4 2.6E-14 8.9E-19 142.1 -0.0 110 472-630 10-127 (219)
125 2yv5_A YJEQ protein; hydrolase 99.3 1.2E-13 4.2E-18 143.9 0.5 116 473-600 160-300 (302)
126 2w0m_A SSO2452; RECA, SSPF, un 99.3 1.7E-13 5.7E-18 135.6 1.0 135 465-631 9-151 (235)
127 2cvh_A DNA repair and recombin 99.3 9.6E-13 3.3E-17 129.3 6.0 111 466-622 7-122 (220)
128 1cke_A CK, MSSA, protein (cyti 99.3 2.2E-14 7.4E-19 142.2 -7.0 127 477-616 4-151 (227)
129 2x8a_A Nuclear valosin-contain 99.3 4.8E-15 1.6E-19 152.4 -12.1 144 466-631 34-191 (274)
130 3e70_C DPA, signal recognition 99.3 6.5E-13 2.2E-17 139.8 3.5 127 474-622 125-259 (328)
131 1wb9_A DNA mismatch repair pro 99.3 1.5E-12 5E-17 151.9 6.3 138 448-636 576-717 (800)
132 1f2t_B RAD50 ABC-ATPase; DNA d 99.3 3.7E-12 1.2E-16 118.7 6.7 54 578-631 41-107 (148)
133 3pih_A Uvrabc system protein A 99.3 2E-12 7E-17 151.9 5.9 126 493-635 383-513 (916)
134 2oap_1 GSPE-2, type II secreti 99.3 6.8E-14 2.3E-18 155.7 -6.7 141 466-622 248-423 (511)
135 1n0w_A DNA repair protein RAD5 99.2 4.5E-12 1.5E-16 126.4 6.2 108 474-621 20-135 (243)
136 1sq5_A Pantothenate kinase; P- 99.2 1.6E-13 5.3E-18 143.5 -5.8 94 445-548 33-151 (308)
137 1u0l_A Probable GTPase ENGC; p 99.2 2.2E-12 7.6E-17 134.3 1.3 103 473-576 164-289 (301)
138 1sxj_E Activator 1 40 kDa subu 99.2 5.8E-12 2E-16 133.1 4.4 116 480-630 38-158 (354)
139 3lnc_A Guanylate kinase, GMP k 99.2 1.3E-13 4.4E-18 137.6 -8.1 76 466-546 15-103 (231)
140 3kta_B Chromosome segregation 99.2 1.7E-11 5.9E-16 117.1 6.9 45 587-631 64-112 (173)
141 4e22_A Cytidylate kinase; P-lo 99.2 1E-12 3.4E-17 133.3 -2.4 98 466-574 18-133 (252)
142 1udx_A The GTP-binding protein 99.1 4E-12 1.4E-16 137.8 -0.6 140 468-632 147-292 (416)
143 1vma_A Cell division protein F 99.1 1.2E-11 3.9E-16 129.0 2.8 98 471-616 97-197 (306)
144 3euj_A Chromosome partition pr 99.1 1.7E-11 5.9E-16 134.7 4.1 65 451-521 8-72 (483)
145 1ls1_A Signal recognition part 99.1 3.8E-11 1.3E-15 124.6 4.8 129 449-629 76-205 (295)
146 2r6f_A Excinuclease ABC subuni 99.1 6.9E-11 2.3E-15 138.4 7.1 110 502-635 432-553 (972)
147 2kjq_A DNAA-related protein; s 99.1 6.8E-11 2.3E-15 110.2 5.1 44 467-516 30-75 (149)
148 1iy2_A ATP-dependent metallopr 99.1 2.1E-13 7.2E-18 140.0 -14.3 139 450-615 50-195 (278)
149 3a00_A Guanylate kinase, GMP k 99.0 4.3E-11 1.5E-15 115.3 2.3 125 478-613 1-169 (186)
150 3lda_A DNA repair protein RAD5 99.0 1.2E-10 4.1E-15 125.6 5.5 108 474-623 174-291 (400)
151 1oix_A RAS-related protein RAB 99.0 1.1E-11 3.8E-16 119.6 -2.4 143 480-634 31-190 (191)
152 1ixz_A ATP-dependent metallopr 99.0 2.7E-13 9.4E-18 137.0 -14.9 140 450-616 26-172 (254)
153 3ney_A 55 kDa erythrocyte memb 99.0 4.5E-11 1.5E-15 116.5 1.1 83 473-565 14-109 (197)
154 3tr0_A Guanylate kinase, GMP k 99.0 6E-11 2.1E-15 115.2 1.5 138 472-613 1-171 (205)
155 2ygr_A Uvrabc system protein A 99.0 9.4E-10 3.2E-14 129.3 11.6 93 537-635 466-570 (993)
156 1t9h_A YLOQ, probable GTPase E 99.0 7.1E-11 2.4E-15 122.9 1.3 97 473-571 168-288 (307)
157 1in4_A RUVB, holliday junction 99.0 1.9E-13 6.5E-18 144.4 -18.7 94 450-547 19-123 (334)
158 1kgd_A CASK, peripheral plasma 98.9 9E-11 3.1E-15 112.5 -0.2 82 476-565 3-95 (180)
159 1qhl_A Protein (cell division 98.9 3E-11 1E-15 120.5 -4.5 75 449-534 9-91 (227)
160 3ec2_A DNA replication protein 98.9 3E-10 1E-14 108.5 2.6 36 472-507 32-67 (180)
161 2qt1_A Nicotinamide riboside k 98.9 2E-10 6.8E-15 112.2 0.7 103 473-614 16-118 (207)
162 2f9l_A RAB11B, member RAS onco 98.8 5E-10 1.7E-14 108.4 1.6 141 480-635 7-167 (199)
163 1svm_A Large T antigen; AAA+ f 98.8 3.7E-11 1.3E-15 128.6 -8.3 136 466-616 157-312 (377)
164 2px0_A Flagellar biosynthesis 98.8 5.2E-09 1.8E-13 108.5 6.9 101 476-628 103-203 (296)
165 3k1j_A LON protease, ATP-depen 98.8 1.8E-10 6.3E-15 131.1 -4.6 154 466-630 48-225 (604)
166 2j41_A Guanylate kinase; GMP, 98.7 2.2E-09 7.4E-14 104.2 0.5 84 473-564 1-95 (207)
167 2dy1_A Elongation factor G; tr 98.7 7.4E-09 2.5E-13 118.9 3.4 131 472-614 3-139 (665)
168 3cr8_A Sulfate adenylyltranfer 98.6 1.9E-09 6.4E-14 120.9 -1.8 90 473-567 364-468 (552)
169 3auy_A DNA double-strand break 98.6 2.4E-08 8.4E-13 106.7 6.9 46 587-632 280-332 (371)
170 3nwj_A ATSK2; P loop, shikimat 98.6 2.4E-09 8.2E-14 108.3 -0.9 52 449-502 17-72 (250)
171 3kta_A Chromosome segregation 98.6 4.5E-09 1.5E-13 100.2 1.0 99 469-569 18-136 (182)
172 3uie_A Adenylyl-sulfate kinase 98.6 1.1E-09 3.9E-14 106.4 -4.3 74 453-534 3-78 (200)
173 2qtf_A Protein HFLX, GTP-bindi 98.6 8.2E-09 2.8E-13 110.1 1.9 142 480-634 181-352 (364)
174 3vaa_A Shikimate kinase, SK; s 98.6 1.6E-08 5.4E-13 98.2 2.6 46 457-502 4-49 (199)
175 3tau_A Guanylate kinase, GMP k 98.6 8.3E-09 2.8E-13 101.1 0.5 70 476-549 6-86 (208)
176 4eun_A Thermoresistant glucoki 98.6 8E-09 2.8E-13 100.4 0.3 71 472-548 23-95 (200)
177 2ius_A DNA translocase FTSK; n 98.5 1.2E-09 4E-14 121.0 -7.6 136 470-621 159-313 (512)
178 1zu4_A FTSY; GTPase, signal re 98.5 2E-08 6.8E-13 105.2 2.0 81 467-547 94-185 (320)
179 2dhr_A FTSH; AAA+ protein, hex 98.5 2.5E-09 8.4E-14 118.5 -6.4 140 451-617 42-188 (499)
180 2bdt_A BH3686; alpha-beta prot 98.5 1.5E-08 5.2E-13 97.2 -0.2 115 478-625 2-135 (189)
181 3ice_A Transcription terminati 98.5 1.8E-08 6E-13 106.8 -0.4 56 445-502 129-198 (422)
182 3t34_A Dynamin-related protein 98.4 6.4E-08 2.2E-12 102.9 1.9 46 466-514 25-72 (360)
183 2vp4_A Deoxynucleoside kinase; 98.3 2E-08 6.8E-13 100.0 -3.3 64 472-539 14-87 (230)
184 2zr9_A Protein RECA, recombina 98.2 1.6E-06 5.4E-11 91.9 7.8 40 474-513 57-97 (349)
185 2r6a_A DNAB helicase, replicat 98.2 8.8E-07 3E-11 97.1 5.5 133 466-620 191-328 (454)
186 2dr3_A UPF0273 protein PH0284; 98.2 2.8E-07 9.4E-12 91.6 1.2 48 466-513 10-59 (247)
187 3tqc_A Pantothenate kinase; bi 98.1 6.5E-07 2.2E-11 93.6 2.7 126 466-620 74-211 (321)
188 1knq_A Gluconate kinase; ALFA/ 98.1 5E-07 1.7E-11 85.3 1.2 56 476-537 6-62 (175)
189 1rz3_A Hypothetical protein rb 98.1 6.6E-07 2.3E-11 86.9 1.6 48 474-521 18-65 (201)
190 2ffh_A Protein (FFH); SRP54, s 98.1 1.7E-06 5.8E-11 93.8 4.1 144 450-622 77-228 (425)
191 2ce7_A Cell division protein F 98.0 3.8E-06 1.3E-10 92.4 5.8 33 466-500 39-71 (476)
192 2pez_A Bifunctional 3'-phospho 97.9 9.2E-07 3.2E-11 83.9 -1.2 42 476-518 3-46 (179)
193 2xau_A PRE-mRNA-splicing facto 97.9 4.9E-06 1.7E-10 97.1 3.6 45 587-631 190-235 (773)
194 3r20_A Cytidylate kinase; stru 97.8 1.3E-06 4.3E-11 87.3 -2.1 71 477-547 8-96 (233)
195 4a1f_A DNAB helicase, replicat 97.8 7.5E-06 2.6E-10 86.1 2.7 103 467-619 35-141 (338)
196 3m6a_A ATP-dependent protease 97.7 4.4E-06 1.5E-10 93.7 0.3 81 451-535 85-165 (543)
197 1f6b_A SAR1; gtpases, N-termin 97.7 6.8E-06 2.3E-10 79.2 1.5 60 455-517 5-72 (198)
198 2z43_A DNA repair and recombin 97.7 1.6E-05 5.5E-10 83.1 4.5 40 474-513 103-149 (324)
199 1uf9_A TT1252 protein; P-loop, 97.7 8.3E-06 2.8E-10 78.4 1.9 82 478-572 8-93 (203)
200 1m7g_A Adenylylsulfate kinase; 97.7 4E-06 1.4E-10 81.9 -0.5 45 473-517 20-66 (211)
201 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 1.9E-05 6.5E-10 84.7 4.7 42 474-515 16-69 (392)
202 3kl4_A SRP54, signal recogniti 97.7 4.4E-05 1.5E-09 82.8 7.4 40 477-516 96-135 (433)
203 2e87_A Hypothetical protein PH 97.7 2.7E-05 9.2E-10 82.5 5.6 45 587-632 231-276 (357)
204 1kag_A SKI, shikimate kinase I 97.7 1.3E-05 4.4E-10 75.1 2.7 33 477-513 3-35 (173)
205 1mky_A Probable GTP-binding pr 97.7 1.5E-05 5.1E-10 86.9 3.6 70 479-548 181-263 (439)
206 2qor_A Guanylate kinase; phosp 97.7 6.1E-06 2.1E-10 80.1 0.3 54 474-527 8-72 (204)
207 4eaq_A DTMP kinase, thymidylat 97.7 1.2E-05 4E-10 80.0 1.9 44 468-512 13-59 (229)
208 2p67_A LAO/AO transport system 97.6 6.8E-06 2.3E-10 86.6 -0.6 52 466-517 44-95 (341)
209 2jaq_A Deoxyguanosine kinase; 97.6 3.1E-06 1.1E-10 81.4 -3.3 70 480-549 2-87 (205)
210 3b9p_A CG5977-PA, isoform A; A 97.6 5.4E-05 1.8E-09 77.5 5.2 33 589-621 97-129 (297)
211 1m2o_B GTP-binding protein SAR 97.5 5.9E-05 2E-09 71.9 4.4 50 467-517 13-70 (190)
212 1ega_A Protein (GTP-binding pr 97.5 3.5E-05 1.2E-09 79.7 2.9 115 477-622 7-130 (301)
213 2www_A Methylmalonic aciduria 97.5 2.9E-05 9.8E-10 82.1 1.6 43 476-518 72-114 (349)
214 2gj8_A MNME, tRNA modification 97.4 8.1E-05 2.8E-09 69.8 4.2 27 476-502 2-28 (172)
215 3hr8_A Protein RECA; alpha and 97.4 5.6E-05 1.9E-09 80.0 2.5 59 474-535 57-116 (356)
216 3llm_A ATP-dependent RNA helic 97.3 0.00013 4.6E-09 72.2 4.3 122 474-632 72-204 (235)
217 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.6E-09 70.1 3.1 32 470-501 2-33 (184)
218 1j8m_F SRP54, signal recogniti 97.3 3.3E-05 1.1E-09 79.8 -0.5 64 450-519 75-139 (297)
219 1v5w_A DMC1, meiotic recombina 97.3 0.00011 3.7E-09 77.4 3.4 28 474-501 118-145 (343)
220 1sxj_C Activator 1 40 kDa subu 97.2 1.4E-05 4.6E-10 84.0 -3.9 68 466-533 32-102 (340)
221 2p5t_B PEZT; postsegregational 97.2 8.9E-05 3E-09 74.5 1.5 42 474-517 28-69 (253)
222 2yvu_A Probable adenylyl-sulfa 97.1 0.00013 4.3E-09 69.4 2.1 42 474-515 9-51 (186)
223 3t61_A Gluconokinase; PSI-biol 97.1 9.8E-05 3.4E-09 71.1 1.3 35 478-516 18-52 (202)
224 3bh0_A DNAB-like replicative h 97.1 0.0002 6.9E-09 74.5 3.6 35 466-500 56-90 (315)
225 1jjv_A Dephospho-COA kinase; P 97.1 0.00018 6E-09 69.5 2.9 29 480-513 4-32 (206)
226 1ly1_A Polynucleotide kinase; 97.1 0.0016 5.4E-08 60.8 9.2 31 479-512 3-33 (181)
227 2qag_A Septin-2, protein NEDD5 97.1 4.3E-05 1.5E-09 81.2 -2.0 59 446-513 14-72 (361)
228 1fnn_A CDC6P, cell division co 97.1 0.0014 4.8E-08 69.0 9.4 30 476-505 40-71 (389)
229 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00034 1.2E-08 64.5 4.0 34 469-503 15-49 (149)
230 2wji_A Ferrous iron transport 97.0 0.00057 2E-08 63.2 5.0 24 479-502 4-27 (165)
231 1lv7_A FTSH; alpha/beta domain 97.0 7.8E-05 2.7E-09 74.7 -1.3 49 467-519 36-84 (257)
232 1np6_A Molybdopterin-guanine d 97.0 0.00028 9.6E-09 67.0 2.5 39 478-516 6-47 (174)
233 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00035 1.2E-08 74.8 3.5 41 474-514 18-69 (396)
234 1ypw_A Transitional endoplasmi 96.9 7.2E-05 2.5E-09 87.6 -2.2 61 473-535 233-293 (806)
235 2wjg_A FEOB, ferrous iron tran 96.9 0.00044 1.5E-08 64.9 3.6 37 479-515 8-55 (188)
236 2if2_A Dephospho-COA kinase; a 96.9 0.00054 1.8E-08 65.9 3.6 21 480-500 3-23 (204)
237 1ex7_A Guanylate kinase; subst 96.8 0.00033 1.1E-08 67.2 2.1 47 480-528 3-62 (186)
238 3ihw_A Centg3; RAS, centaurin, 96.8 0.00099 3.4E-08 63.0 5.2 37 480-516 22-67 (184)
239 2zej_A Dardarin, leucine-rich 96.8 0.00056 1.9E-08 64.5 3.4 25 480-504 4-28 (184)
240 1l8q_A Chromosomal replication 96.8 0.00081 2.8E-08 69.7 4.7 29 477-505 36-64 (324)
241 1qhx_A CPT, protein (chloramph 96.8 0.0007 2.4E-08 63.4 3.6 27 477-503 2-28 (178)
242 1gtv_A TMK, thymidylate kinase 96.7 0.0002 7E-09 69.2 -0.3 88 480-586 2-95 (214)
243 3cm0_A Adenylate kinase; ATP-b 96.7 0.00063 2.2E-08 64.2 2.8 27 476-502 2-28 (186)
244 2qby_A CDC6 homolog 1, cell di 96.7 0.00096 3.3E-08 70.0 4.5 31 476-506 43-73 (386)
245 2z4s_A Chromosomal replication 96.7 0.0012 4E-08 72.0 5.2 25 478-502 130-154 (440)
246 2dby_A GTP-binding protein; GD 96.7 0.00031 1E-08 74.7 0.4 59 480-570 3-61 (368)
247 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0003 1E-08 74.0 0.0 37 466-502 10-48 (359)
248 3kb2_A SPBC2 prophage-derived 96.6 0.00096 3.3E-08 61.8 3.2 23 480-502 3-25 (173)
249 2v54_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 63.1 3.9 27 476-502 2-28 (204)
250 3trf_A Shikimate kinase, SK; a 96.6 0.0011 3.7E-08 62.5 3.4 26 477-502 4-29 (185)
251 4ag6_A VIRB4 ATPase, type IV s 96.5 0.00085 2.9E-08 71.7 2.7 36 477-512 34-69 (392)
252 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.3E-08 62.1 3.6 26 477-502 2-27 (192)
253 1vht_A Dephospho-COA kinase; s 96.5 0.0014 4.9E-08 63.7 3.9 32 477-513 3-34 (218)
254 1ko7_A HPR kinase/phosphatase; 96.5 0.0011 3.8E-08 68.6 2.9 45 466-511 133-181 (314)
255 1q3t_A Cytidylate kinase; nucl 96.4 0.0014 4.9E-08 64.7 3.6 26 475-500 13-38 (236)
256 1fzq_A ADP-ribosylation factor 96.4 0.0013 4.6E-08 61.7 3.1 39 478-516 16-62 (181)
257 2rhm_A Putative kinase; P-loop 96.4 0.0013 4.3E-08 62.3 2.9 27 476-502 3-29 (193)
258 1gvn_B Zeta; postsegregational 96.4 0.0015 5.1E-08 66.9 3.7 36 476-513 31-66 (287)
259 3qks_A DNA double-strand break 96.4 0.0018 6E-08 62.8 4.0 29 470-499 16-44 (203)
260 2c95_A Adenylate kinase 1; tra 96.3 0.0017 5.7E-08 61.6 3.2 27 476-502 7-33 (196)
261 3lw7_A Adenylate kinase relate 96.3 0.0018 6.1E-08 59.7 3.2 19 480-498 3-21 (179)
262 1jal_A YCHF protein; nucleotid 96.3 0.0028 9.5E-08 67.1 5.0 36 478-513 2-48 (363)
263 2wwf_A Thymidilate kinase, put 96.3 0.0019 6.4E-08 62.1 3.4 27 476-502 8-34 (212)
264 3uk6_A RUVB-like 2; hexameric 96.3 0.0065 2.2E-07 63.7 7.8 39 476-514 68-106 (368)
265 2plr_A DTMP kinase, probable t 96.3 0.0019 6.6E-08 61.9 3.4 28 477-504 3-30 (213)
266 1xjc_A MOBB protein homolog; s 96.3 0.0014 4.7E-08 61.9 2.0 36 479-514 5-43 (169)
267 3iij_A Coilin-interacting nucl 96.2 0.0019 6.7E-08 60.6 3.0 27 476-502 9-35 (180)
268 1nn5_A Similar to deoxythymidy 96.2 0.0022 7.5E-08 61.8 3.4 27 475-501 6-32 (215)
269 4a82_A Cystic fibrosis transme 96.2 0.91 3.1E-05 50.7 25.2 11 451-461 356-366 (578)
270 3lxx_A GTPase IMAP family memb 96.2 0.0029 9.8E-08 62.5 4.0 28 480-507 31-58 (239)
271 1via_A Shikimate kinase; struc 96.2 0.002 7E-08 60.2 2.8 23 480-502 6-28 (175)
272 2bwj_A Adenylate kinase 5; pho 96.2 0.0019 6.6E-08 61.3 2.5 29 474-502 8-36 (199)
273 3h4m_A Proteasome-activating n 96.1 0.0071 2.4E-07 61.0 6.6 28 475-502 48-75 (285)
274 4dcu_A GTP-binding protein ENG 96.1 0.0058 2E-07 66.7 6.1 22 479-500 24-45 (456)
275 2vli_A Antibiotic resistance p 96.1 0.0019 6.6E-08 60.5 2.0 27 476-502 3-29 (183)
276 1tev_A UMP-CMP kinase; ploop, 96.0 0.0031 1E-07 59.5 3.2 26 477-502 2-27 (196)
277 2ze6_A Isopentenyl transferase 96.0 0.003 1E-07 63.4 3.1 24 479-502 2-25 (253)
278 1ltq_A Polynucleotide kinase; 96.0 0.02 6.8E-07 58.3 9.2 31 479-512 3-33 (301)
279 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.022 7.7E-07 59.0 9.7 28 475-502 42-69 (322)
280 2lkc_A Translation initiation 95.9 0.0073 2.5E-07 55.7 5.4 25 476-500 6-30 (178)
281 1nks_A Adenylate kinase; therm 95.9 0.0033 1.1E-07 59.1 3.1 24 480-503 3-26 (194)
282 2fn4_A P23, RAS-related protei 95.9 0.0062 2.1E-07 56.2 4.8 22 480-501 11-32 (181)
283 3zvl_A Bifunctional polynucleo 95.9 0.0071 2.4E-07 65.2 5.8 36 474-513 254-289 (416)
284 1aky_A Adenylate kinase; ATP:A 95.9 0.0043 1.5E-07 60.4 3.6 27 476-502 2-28 (220)
285 2q6t_A DNAB replication FORK h 95.9 0.0028 9.4E-08 69.0 2.4 132 466-619 188-324 (444)
286 3cbq_A GTP-binding protein REM 95.9 0.003 1E-07 60.2 2.4 22 480-501 25-46 (195)
287 1zd8_A GTP:AMP phosphotransfer 95.8 0.0038 1.3E-07 61.1 3.0 27 476-502 5-31 (227)
288 2cdn_A Adenylate kinase; phosp 95.8 0.0049 1.7E-07 58.9 3.6 26 477-502 19-44 (201)
289 3cf0_A Transitional endoplasmi 95.8 0.0031 1.1E-07 64.8 2.3 39 473-513 44-82 (301)
290 1zuh_A Shikimate kinase; alpha 95.8 0.0048 1.7E-07 57.1 3.4 25 478-502 7-31 (168)
291 2iyv_A Shikimate kinase, SK; t 95.8 0.0038 1.3E-07 58.7 2.6 25 478-502 2-26 (184)
292 3ake_A Cytidylate kinase; CMP 95.8 0.0045 1.5E-07 59.1 3.2 23 480-502 4-26 (208)
293 2erx_A GTP-binding protein DI- 95.8 0.0084 2.9E-07 54.7 4.9 21 480-500 5-25 (172)
294 3fb4_A Adenylate kinase; psych 95.7 0.0047 1.6E-07 59.7 3.2 23 480-502 2-24 (216)
295 1ukz_A Uridylate kinase; trans 95.7 0.0041 1.4E-07 59.5 2.8 26 477-502 14-39 (203)
296 2z0h_A DTMP kinase, thymidylat 95.7 0.0051 1.8E-07 58.2 3.3 23 480-502 2-24 (197)
297 1e6c_A Shikimate kinase; phosp 95.7 0.0046 1.6E-07 57.3 2.8 24 479-502 3-26 (173)
298 2ew1_A RAS-related protein RAB 95.7 0.0084 2.9E-07 57.5 4.8 21 480-500 28-48 (201)
299 3dl0_A Adenylate kinase; phosp 95.7 0.0046 1.6E-07 59.8 2.9 23 480-502 2-24 (216)
300 2pt5_A Shikimate kinase, SK; a 95.7 0.0057 1.9E-07 56.4 3.3 23 480-502 2-24 (168)
301 1zak_A Adenylate kinase; ATP:A 95.6 0.0048 1.6E-07 60.1 2.8 26 477-502 4-29 (222)
302 1a7j_A Phosphoribulokinase; tr 95.6 0.003 1E-07 64.8 1.3 26 477-502 4-29 (290)
303 1qf9_A UMP/CMP kinase, protein 95.6 0.0057 2E-07 57.5 3.1 25 478-502 6-30 (194)
304 2pbr_A DTMP kinase, thymidylat 95.6 0.006 2.1E-07 57.5 3.2 23 480-502 2-24 (195)
305 2v1u_A Cell division control p 95.6 0.0037 1.3E-07 65.5 1.8 28 476-503 42-69 (387)
306 3dm5_A SRP54, signal recogniti 95.6 0.046 1.6E-06 59.2 10.4 35 477-511 99-133 (443)
307 2grj_A Dephospho-COA kinase; T 95.6 0.0062 2.1E-07 58.5 3.3 25 478-502 12-36 (192)
308 1sxj_D Activator 1 41 kDa subu 95.5 0.0015 5.1E-08 68.0 -1.2 37 467-503 45-83 (353)
309 1uj2_A Uridine-cytidine kinase 95.5 0.0064 2.2E-07 60.6 3.2 24 479-502 23-46 (252)
310 1z0j_A RAB-22, RAS-related pro 95.5 0.01 3.4E-07 54.1 4.3 28 480-507 8-40 (170)
311 1z2a_A RAS-related protein RAB 95.5 0.0071 2.4E-07 55.0 3.2 21 480-500 7-27 (168)
312 2eyu_A Twitching motility prot 95.5 0.0089 3.1E-07 60.3 4.2 31 595-628 88-118 (261)
313 3tlx_A Adenylate kinase 2; str 95.4 0.007 2.4E-07 60.1 3.3 27 476-502 27-53 (243)
314 1ksh_A ARF-like protein 2; sma 95.4 0.014 4.9E-07 54.3 5.3 32 476-507 16-51 (186)
315 3q72_A GTP-binding protein RAD 95.4 0.0065 2.2E-07 55.4 2.8 23 480-502 4-26 (166)
316 2oil_A CATX-8, RAS-related pro 95.4 0.0099 3.4E-07 55.9 4.1 21 480-500 27-47 (193)
317 3clv_A RAB5 protein, putative; 95.4 0.01 3.5E-07 55.7 4.1 22 480-501 9-30 (208)
318 2nzj_A GTP-binding protein REM 95.4 0.0083 2.8E-07 55.1 3.3 23 480-502 6-28 (175)
319 1kao_A RAP2A; GTP-binding prot 95.4 0.0082 2.8E-07 54.3 3.2 21 480-500 5-25 (167)
320 1r2q_A RAS-related protein RAB 95.3 0.012 4E-07 53.6 4.3 28 480-507 8-40 (170)
321 2bcg_Y Protein YP2, GTP-bindin 95.3 0.015 5E-07 55.4 5.1 35 480-514 10-55 (206)
322 3q85_A GTP-binding protein REM 95.3 0.0086 2.9E-07 54.7 3.3 22 480-501 4-25 (169)
323 2ged_A SR-beta, signal recogni 95.3 0.0084 2.9E-07 56.3 3.2 26 477-502 47-72 (193)
324 3lxw_A GTPase IMAP family memb 95.3 0.0082 2.8E-07 59.8 3.3 24 479-502 22-45 (247)
325 3iby_A Ferrous iron transport 95.3 0.0085 2.9E-07 60.2 3.4 23 480-502 3-25 (256)
326 3t1o_A Gliding protein MGLA; G 95.3 0.0089 3E-07 56.0 3.4 25 480-504 16-40 (198)
327 3a8t_A Adenylate isopentenyltr 95.3 0.0093 3.2E-07 62.3 3.8 28 476-503 38-65 (339)
328 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0084 2.9E-07 60.2 3.3 26 476-501 2-27 (260)
329 2ce2_X GTPase HRAS; signaling 95.3 0.0083 2.8E-07 54.2 3.0 22 480-501 5-26 (166)
330 1u8z_A RAS-related protein RAL 95.3 0.0088 3E-07 54.2 3.2 21 480-500 6-26 (168)
331 2dyk_A GTP-binding protein; GT 95.3 0.0093 3.2E-07 53.9 3.2 23 480-502 3-25 (161)
332 3k53_A Ferrous iron transport 95.2 0.0082 2.8E-07 60.5 3.1 24 480-503 5-28 (271)
333 1m7b_A RND3/RHOE small GTP-bin 95.2 0.013 4.5E-07 54.7 4.4 29 480-508 9-42 (184)
334 1c1y_A RAS-related protein RAP 95.2 0.0092 3.2E-07 54.2 3.2 21 480-500 5-25 (167)
335 2f6r_A COA synthase, bifunctio 95.2 0.0081 2.8E-07 61.1 3.0 23 478-500 75-97 (281)
336 1z08_A RAS-related protein RAB 95.2 0.0095 3.3E-07 54.4 3.2 22 480-501 8-29 (170)
337 1g16_A RAS-related protein SEC 95.2 0.0091 3.1E-07 54.4 3.0 22 480-501 5-26 (170)
338 3d8b_A Fidgetin-like protein 1 95.2 0.035 1.2E-06 58.3 7.9 27 476-502 115-141 (357)
339 2qmh_A HPR kinase/phosphorylas 95.2 0.013 4.5E-07 56.6 4.1 34 467-501 24-57 (205)
340 1ky3_A GTP-binding protein YPT 95.2 0.01 3.4E-07 54.8 3.2 21 480-500 10-30 (182)
341 1ek0_A Protein (GTP-binding pr 95.2 0.01 3.4E-07 54.0 3.2 21 480-500 5-25 (170)
342 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.01 3.5E-07 54.7 3.2 21 480-500 9-29 (177)
343 3t5d_A Septin-7; GTP-binding p 95.1 0.0088 3E-07 60.4 2.9 22 480-501 10-31 (274)
344 3be4_A Adenylate kinase; malar 95.1 0.01 3.5E-07 57.7 3.2 26 477-502 4-29 (217)
345 4fcw_A Chaperone protein CLPB; 95.1 0.0075 2.6E-07 61.5 2.4 39 478-516 47-86 (311)
346 2h92_A Cytidylate kinase; ross 95.1 0.008 2.7E-07 58.2 2.5 25 478-502 3-27 (219)
347 3tw8_B RAS-related protein RAB 95.1 0.01 3.5E-07 54.6 3.1 22 480-501 11-32 (181)
348 1svi_A GTP-binding protein YSX 95.1 0.01 3.4E-07 55.8 2.9 25 477-501 22-46 (195)
349 4dsu_A GTPase KRAS, isoform 2B 95.0 0.012 4.1E-07 54.7 3.2 21 480-500 6-26 (189)
350 2qp9_X Vacuolar protein sortin 95.0 0.02 6.7E-07 60.3 5.3 27 476-502 82-108 (355)
351 3pqc_A Probable GTP-binding pr 95.0 0.011 3.6E-07 55.4 2.9 24 479-502 24-47 (195)
352 3t5g_A GTP-binding protein RHE 95.0 0.019 6.5E-07 53.2 4.6 29 480-508 8-41 (181)
353 3bc1_A RAS-related protein RAB 95.0 0.012 4E-07 54.9 3.2 21 480-500 13-33 (195)
354 3b1v_A Ferrous iron uptake tra 95.0 0.012 4.1E-07 59.7 3.3 23 480-502 5-27 (272)
355 2hxs_A RAB-26, RAS-related pro 94.9 0.014 4.6E-07 53.8 3.4 21 480-500 8-28 (178)
356 2gf0_A GTP-binding protein DI- 94.9 0.02 6.7E-07 53.9 4.6 22 479-500 9-30 (199)
357 1r8s_A ADP-ribosylation factor 94.9 0.013 4.4E-07 53.2 3.2 21 480-500 2-22 (164)
358 4bas_A ADP-ribosylation factor 94.9 0.016 5.6E-07 54.4 4.0 31 477-507 16-52 (199)
359 2fg5_A RAB-22B, RAS-related pr 94.9 0.017 6E-07 54.3 4.2 28 480-507 25-57 (192)
360 3kkq_A RAS-related protein M-R 94.9 0.022 7.5E-07 52.8 4.8 21 480-500 20-40 (183)
361 2cxx_A Probable GTP-binding pr 94.9 0.012 4E-07 54.9 2.9 22 480-501 3-24 (190)
362 2g6b_A RAS-related protein RAB 94.9 0.013 4.5E-07 54.0 3.2 21 480-500 12-32 (180)
363 1e4v_A Adenylate kinase; trans 94.9 0.012 4.2E-07 56.8 3.1 23 480-502 2-24 (214)
364 2y8e_A RAB-protein 6, GH09086P 94.9 0.013 4.4E-07 53.9 3.0 21 480-500 16-36 (179)
365 1upt_A ARL1, ADP-ribosylation 94.9 0.014 4.7E-07 53.3 3.2 36 600-637 135-170 (171)
366 3tmk_A Thymidylate kinase; pho 94.8 0.014 4.7E-07 57.2 3.3 29 476-504 3-31 (216)
367 1gwn_A RHO-related GTP-binding 94.8 0.02 6.9E-07 55.0 4.4 29 480-508 30-63 (205)
368 3bos_A Putative DNA replicatio 94.8 0.011 3.7E-07 57.4 2.5 28 476-503 50-77 (242)
369 2efe_B Small GTP-binding prote 94.8 0.015 5.1E-07 53.7 3.2 22 480-501 14-35 (181)
370 1z0f_A RAB14, member RAS oncog 94.8 0.015 5E-07 53.5 3.2 22 480-501 17-38 (179)
371 3exa_A TRNA delta(2)-isopenten 94.8 0.016 5.5E-07 59.9 3.7 26 477-502 2-27 (322)
372 2g3y_A GTP-binding protein GEM 94.8 0.026 8.9E-07 54.8 5.0 22 480-501 39-60 (211)
373 3v9p_A DTMP kinase, thymidylat 94.7 0.013 4.5E-07 57.8 2.9 29 475-503 22-50 (227)
374 1ak2_A Adenylate kinase isoenz 94.7 0.017 5.7E-07 56.7 3.7 27 476-502 14-40 (233)
375 3con_A GTPase NRAS; structural 94.7 0.015 5.2E-07 54.4 3.2 22 480-501 23-44 (190)
376 2xb4_A Adenylate kinase; ATP-b 94.7 0.015 5.3E-07 56.7 3.3 23 480-502 2-24 (223)
377 3tqf_A HPR(Ser) kinase; transf 94.7 0.021 7.3E-07 53.8 4.0 33 467-500 6-38 (181)
378 2a9k_A RAS-related protein RAL 94.7 0.016 5.4E-07 53.7 3.2 21 480-500 20-40 (187)
379 3reg_A RHO-like small GTPase; 94.7 0.025 8.6E-07 53.2 4.5 22 480-501 25-46 (194)
380 3b5x_A Lipid A export ATP-bind 94.6 7 0.00024 43.5 38.4 10 451-460 358-367 (582)
381 4edh_A DTMP kinase, thymidylat 94.6 0.017 5.8E-07 56.4 3.3 27 476-502 4-30 (213)
382 1zd9_A ADP-ribosylation factor 94.6 0.022 7.4E-07 53.5 4.0 22 479-500 23-44 (188)
383 3d3q_A TRNA delta(2)-isopenten 94.6 0.014 4.7E-07 61.1 2.8 25 479-503 8-32 (340)
384 1wf3_A GTP-binding protein; GT 94.6 0.016 5.4E-07 59.6 3.3 22 480-501 9-30 (301)
385 2bme_A RAB4A, RAS-related prot 94.6 0.016 5.4E-07 53.9 3.0 21 480-500 12-32 (186)
386 2gf9_A RAS-related protein RAB 94.6 0.017 5.8E-07 54.2 3.2 22 480-501 24-45 (189)
387 1ypw_A Transitional endoplasmi 94.6 0.0016 5.4E-08 76.3 -4.9 47 470-518 503-549 (806)
388 2axn_A 6-phosphofructo-2-kinas 94.6 0.016 5.6E-07 64.2 3.6 27 476-502 33-59 (520)
389 1vg8_A RAS-related protein RAB 94.6 0.017 5.8E-07 54.8 3.2 22 480-501 10-31 (207)
390 3auy_A DNA double-strand break 94.6 0.018 6.2E-07 60.9 3.8 30 469-499 17-46 (371)
391 3bgw_A DNAB-like replicative h 94.6 0.095 3.2E-06 56.9 9.5 34 467-500 186-219 (444)
392 3n70_A Transport activator; si 94.6 0.019 6.6E-07 52.0 3.4 38 476-513 22-59 (145)
393 2w58_A DNAI, primosome compone 94.6 0.017 5.7E-07 55.1 3.1 29 479-507 55-83 (202)
394 2cjw_A GTP-binding protein GEM 94.6 0.017 5.9E-07 54.7 3.2 21 480-500 8-28 (192)
395 2bov_A RAla, RAS-related prote 94.6 0.017 5.9E-07 54.6 3.2 29 480-508 16-49 (206)
396 2xtp_A GTPase IMAP family memb 94.6 0.017 5.6E-07 57.6 3.2 23 479-501 23-45 (260)
397 3lv8_A DTMP kinase, thymidylat 94.6 0.019 6.3E-07 57.1 3.5 27 477-503 26-52 (236)
398 2ocp_A DGK, deoxyguanosine kin 94.5 0.015 5.2E-07 57.3 2.8 26 477-502 1-26 (241)
399 4dhe_A Probable GTP-binding pr 94.5 0.011 3.6E-07 57.1 1.6 25 478-502 29-53 (223)
400 1moz_A ARL1, ADP-ribosylation 94.5 0.012 4E-07 54.7 1.8 24 477-500 17-40 (183)
401 3ld9_A DTMP kinase, thymidylat 94.5 0.018 6.1E-07 56.7 3.3 27 476-502 19-45 (223)
402 4tmk_A Protein (thymidylate ki 94.5 0.02 6.8E-07 55.9 3.5 27 477-503 2-28 (213)
403 1sky_E F1-ATPase, F1-ATP synth 94.5 0.011 3.6E-07 64.6 1.6 44 467-511 141-184 (473)
404 1jbk_A CLPB protein; beta barr 94.5 0.021 7.1E-07 52.9 3.5 28 476-503 41-68 (195)
405 1p5z_B DCK, deoxycytidine kina 94.5 0.012 4E-07 59.1 1.9 29 475-503 21-49 (263)
406 1z06_A RAS-related protein RAB 94.5 0.019 6.5E-07 53.8 3.2 21 480-500 22-42 (189)
407 3tkl_A RAS-related protein RAB 94.5 0.019 6.4E-07 53.9 3.2 21 480-500 18-38 (196)
408 3llu_A RAS-related GTP-binding 94.5 0.018 6.3E-07 54.5 3.1 24 480-503 22-45 (196)
409 3oes_A GTPase rhebl1; small GT 94.5 0.018 6.1E-07 54.7 3.0 25 477-501 23-47 (201)
410 1nrj_B SR-beta, signal recogni 94.5 0.019 6.4E-07 55.2 3.2 24 479-502 13-36 (218)
411 1zbd_A Rabphilin-3A; G protein 94.5 0.02 6.7E-07 54.3 3.3 21 480-500 10-30 (203)
412 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.019 6.6E-07 53.1 3.2 21 480-500 7-27 (186)
413 3umf_A Adenylate kinase; rossm 94.4 0.011 3.8E-07 57.9 1.4 30 474-503 25-54 (217)
414 3dz8_A RAS-related protein RAB 94.4 0.019 6.5E-07 54.0 3.0 22 480-501 25-46 (191)
415 2qu8_A Putative nucleolar GTP- 94.4 0.02 6.8E-07 55.8 3.2 23 479-501 30-52 (228)
416 2il1_A RAB12; G-protein, GDP, 94.4 0.019 6.6E-07 54.1 3.0 21 480-500 28-48 (192)
417 3iev_A GTP-binding protein ERA 94.3 0.02 6.9E-07 59.0 3.3 23 479-501 11-33 (308)
418 3bwd_D RAC-like GTP-binding pr 94.3 0.024 8.3E-07 52.3 3.6 24 477-500 7-30 (182)
419 2a5j_A RAS-related protein RAB 94.3 0.021 7.3E-07 53.6 3.2 21 480-500 23-43 (191)
420 3b60_A Lipid A export ATP-bind 94.3 8.2 0.00028 42.9 34.1 10 451-460 358-367 (582)
421 2fv8_A H6, RHO-related GTP-bin 94.3 0.021 7.1E-07 54.6 3.1 34 467-500 14-47 (207)
422 3i8s_A Ferrous iron transport 94.3 0.021 7.1E-07 57.8 3.2 23 480-502 5-27 (274)
423 2yl4_A ATP-binding cassette SU 94.2 8.6 0.00029 42.9 36.1 11 451-461 359-369 (595)
424 2o52_A RAS-related protein RAB 94.2 0.022 7.5E-07 54.1 3.1 21 480-500 27-47 (200)
425 1zj6_A ADP-ribosylation factor 94.2 0.023 7.7E-07 53.2 3.1 24 477-500 15-38 (187)
426 2wsm_A Hydrogenase expression/ 94.2 0.022 7.4E-07 54.9 3.1 23 479-501 31-53 (221)
427 2atv_A RERG, RAS-like estrogen 94.2 0.024 8.1E-07 53.5 3.2 31 478-508 28-63 (196)
428 1x3s_A RAS-related protein RAB 94.2 0.024 8.1E-07 53.0 3.2 22 479-500 16-37 (195)
429 3cph_A RAS-related protein SEC 94.2 0.023 8E-07 54.0 3.2 24 477-500 19-42 (213)
430 2iwr_A Centaurin gamma 1; ANK 94.2 0.019 6.4E-07 53.0 2.4 21 480-500 9-29 (178)
431 3crm_A TRNA delta(2)-isopenten 94.2 0.021 7.3E-07 59.3 3.0 25 479-503 6-30 (323)
432 2h57_A ADP-ribosylation factor 94.1 0.019 6.5E-07 53.8 2.4 24 478-501 21-44 (190)
433 2h17_A ADP-ribosylation factor 94.1 0.021 7.2E-07 53.2 2.6 37 479-515 22-66 (181)
434 2p5s_A RAS and EF-hand domain 94.1 0.025 8.5E-07 53.6 3.2 25 476-500 26-50 (199)
435 3a1s_A Iron(II) transport prot 94.1 0.025 8.6E-07 56.7 3.3 23 480-502 7-29 (258)
436 3cnl_A YLQF, putative uncharac 94.1 0.026 9E-07 56.8 3.5 30 479-508 100-129 (262)
437 3l0o_A Transcription terminati 94.1 0.01 3.4E-07 63.0 0.4 53 447-501 135-198 (427)
438 4gzl_A RAS-related C3 botulinu 94.1 0.039 1.3E-06 52.6 4.5 32 477-508 29-65 (204)
439 2j1l_A RHO-related GTP-binding 94.1 0.025 8.6E-07 54.4 3.1 21 480-500 36-56 (214)
440 2f7s_A C25KG, RAS-related prot 94.0 0.027 9.3E-07 54.0 3.3 22 480-501 27-48 (217)
441 3c5c_A RAS-like protein 12; GD 94.0 0.027 9.2E-07 52.9 3.2 29 480-508 23-56 (187)
442 2q3h_A RAS homolog gene family 94.0 0.028 9.5E-07 53.1 3.3 32 476-507 18-54 (201)
443 2fh5_B SR-beta, signal recogni 94.0 0.027 9.2E-07 53.9 3.2 23 478-500 7-29 (214)
444 2gco_A H9, RHO-related GTP-bin 94.0 0.026 8.8E-07 53.7 3.0 21 480-500 27-47 (201)
445 3def_A T7I23.11 protein; chlor 94.0 0.026 9E-07 56.5 3.2 22 480-501 38-59 (262)
446 3q3j_B RHO-related GTP-binding 93.9 0.037 1.3E-06 53.4 4.1 31 478-508 27-62 (214)
447 1h65_A Chloroplast outer envel 93.9 0.026 8.9E-07 56.7 3.1 23 480-502 41-63 (270)
448 2fu5_C RAS-related protein RAB 93.9 0.019 6.3E-07 53.3 1.9 21 480-500 10-30 (183)
449 3foz_A TRNA delta(2)-isopenten 93.9 0.026 8.8E-07 58.3 3.0 25 478-502 10-34 (316)
450 3r7w_A Gtpase1, GTP-binding pr 93.9 0.028 9.6E-07 57.8 3.3 26 476-501 1-26 (307)
451 1jwy_B Dynamin A GTPase domain 93.8 0.028 9.5E-07 57.5 3.1 23 480-502 26-48 (315)
452 2aka_B Dynamin-1; fusion prote 93.8 0.026 9.1E-07 57.1 2.9 24 479-502 27-50 (299)
453 2p65_A Hypothetical protein PF 93.8 0.026 9E-07 52.1 2.7 29 476-504 41-69 (187)
454 2atx_A Small GTP binding prote 93.8 0.03 1E-06 52.5 3.1 21 480-500 20-40 (194)
455 2b6h_A ADP-ribosylation factor 93.8 0.028 9.6E-07 53.1 2.8 25 476-500 27-51 (192)
456 3qf4_A ABC transporter, ATP-bi 93.7 11 0.00036 42.1 35.7 13 450-462 357-369 (587)
457 1g8f_A Sulfate adenylyltransfe 93.7 0.026 8.9E-07 62.3 2.8 38 476-513 393-433 (511)
458 2hf9_A Probable hydrogenase ni 93.6 0.032 1.1E-06 53.9 3.0 23 479-501 39-61 (226)
459 4djt_A GTP-binding nuclear pro 93.5 0.017 6E-07 55.4 0.9 21 480-500 13-33 (218)
460 2r62_A Cell division protease 93.5 0.012 4.2E-07 58.7 -0.3 31 468-500 36-66 (268)
461 3eph_A TRNA isopentenyltransfe 93.4 0.036 1.2E-06 59.3 3.2 25 478-502 2-26 (409)
462 2qz4_A Paraplegin; AAA+, SPG7, 93.4 0.042 1.4E-06 54.3 3.5 28 475-502 36-63 (262)
463 2hup_A RAS-related protein RAB 93.4 0.038 1.3E-06 52.6 3.1 21 480-500 31-51 (201)
464 2i1q_A DNA repair and recombin 93.4 0.041 1.4E-06 56.8 3.5 27 474-500 94-120 (322)
465 2x77_A ADP-ribosylation factor 93.4 0.026 9.1E-07 52.7 1.8 23 477-499 21-43 (189)
466 1u94_A RECA protein, recombina 93.3 0.034 1.2E-06 58.6 2.8 47 466-513 49-99 (356)
467 2zts_A Putative uncharacterize 93.3 0.054 1.8E-06 52.9 4.0 23 475-497 27-49 (251)
468 2v3c_C SRP54, signal recogniti 93.2 0.012 4E-07 63.8 -0.9 39 478-516 99-137 (432)
469 3cpj_B GTP-binding protein YPT 93.2 0.044 1.5E-06 53.0 3.2 21 480-500 15-35 (223)
470 1m8p_A Sulfate adenylyltransfe 93.2 0.038 1.3E-06 62.0 3.1 37 476-513 394-433 (573)
471 3geh_A MNME, tRNA modification 93.2 0.034 1.2E-06 60.7 2.6 47 477-523 223-281 (462)
472 2yc2_C IFT27, small RAB-relate 93.1 0.021 7.2E-07 54.0 0.8 23 479-501 21-43 (208)
473 3ec1_A YQEH GTPase; atnos1, at 93.1 0.041 1.4E-06 58.3 3.0 25 477-501 161-185 (369)
474 4hlc_A DTMP kinase, thymidylat 93.1 0.049 1.7E-06 52.7 3.3 26 478-503 2-27 (205)
475 1njg_A DNA polymerase III subu 93.0 0.054 1.9E-06 51.9 3.6 38 467-504 31-71 (250)
476 1puj_A YLQF, conserved hypothe 93.0 0.054 1.8E-06 55.1 3.7 30 478-507 120-149 (282)
477 2j0v_A RAC-like GTP-binding pr 93.0 0.047 1.6E-06 52.1 3.0 22 479-500 10-31 (212)
478 3sr0_A Adenylate kinase; phosp 92.9 0.037 1.3E-06 53.6 2.1 24 480-503 2-25 (206)
479 1x6v_B Bifunctional 3'-phospho 92.8 0.049 1.7E-06 61.6 3.3 40 477-516 51-91 (630)
480 1mky_A Probable GTP-binding pr 92.8 0.076 2.6E-06 57.4 4.7 22 480-501 3-24 (439)
481 3h2y_A GTPase family protein; 92.8 0.043 1.5E-06 58.0 2.6 26 477-502 159-184 (368)
482 1lnz_A SPO0B-associated GTP-bi 92.7 0.063 2.2E-06 56.2 3.6 33 469-501 149-181 (342)
483 3qf4_B Uncharacterized ABC tra 92.6 16 0.00054 40.8 31.4 37 276-312 186-222 (598)
484 3fdi_A Uncharacterized protein 92.4 0.068 2.3E-06 51.4 3.3 25 478-502 6-30 (201)
485 4dkx_A RAS-related protein RAB 92.4 0.067 2.3E-06 52.1 3.2 28 480-507 15-47 (216)
486 2hjg_A GTP-binding protein ENG 92.4 0.056 1.9E-06 58.4 2.9 22 480-501 5-26 (436)
487 3syl_A Protein CBBX; photosynt 92.2 0.072 2.5E-06 54.1 3.4 27 476-502 65-91 (309)
488 3gee_A MNME, tRNA modification 92.2 0.055 1.9E-06 59.3 2.6 45 477-521 232-288 (476)
489 2hjg_A GTP-binding protein ENG 92.2 0.12 4.2E-06 55.7 5.3 47 480-526 177-235 (436)
490 3gj0_A GTP-binding nuclear pro 92.1 0.055 1.9E-06 52.1 2.2 39 593-631 164-207 (221)
491 3hws_A ATP-dependent CLP prote 92.1 0.068 2.3E-06 56.0 3.0 26 477-502 50-75 (363)
492 3th5_A RAS-related C3 botulinu 91.2 0.029 9.9E-07 53.3 0.0 24 477-500 29-52 (204)
493 3io5_A Recombination and repai 91.9 0.047 1.6E-06 56.5 1.5 39 475-514 26-67 (333)
494 2orw_A Thymidine kinase; TMTK, 91.8 0.069 2.4E-06 50.6 2.5 26 477-502 2-28 (184)
495 1wxq_A GTP-binding protein; st 91.8 0.077 2.6E-06 56.7 3.1 23 480-502 2-24 (397)
496 1zcb_A G alpha I/13; GTP-bindi 91.8 0.063 2.2E-06 56.7 2.4 29 476-504 31-59 (362)
497 2chg_A Replication factor C sm 91.7 0.084 2.9E-06 49.9 2.9 23 480-502 40-62 (226)
498 3l0i_B RAS-related protein RAB 91.6 0.021 7.3E-07 54.1 -1.4 22 480-501 35-56 (199)
499 1xzp_A Probable tRNA modificat 91.6 0.035 1.2E-06 61.0 0.1 40 477-516 242-293 (482)
500 2gks_A Bifunctional SAT/APS ki 91.6 0.084 2.9E-06 58.9 3.2 27 476-502 370-396 (546)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.4e-90 Score=845.14 Aligned_cols=457 Identities=32% Similarity=0.437 Sum_probs=423.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRN 255 (637)
Q Consensus 176 ~l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~ 255 (637)
.+++++++..++.+++.+++.++++++..++|.++|+|++++|++|||++++|++++|+++|++.+++.+...+..++..
T Consensus 141 ~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~ 220 (1321)
T 4f4c_A 141 SYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQY 220 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHH
Q 006650 256 SLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335 (637)
Q Consensus 256 ~l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~ 335 (637)
+++++++++++++++|++++++++++|+++++..+++++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++
T Consensus 221 ~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 300 (1321)
T 4f4c_A 221 LSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELER 300 (1321)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415 (637)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~ 415 (637)
|++..++..+...+.....+.......++..+..++++++|++++..|.+|+|++++++.|...+..|+..+...+..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (1321)
T 4f4c_A 301 YSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLG 380 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777777766666666667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcc-ccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHH
Q 006650 416 QSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494 (637)
Q Consensus 416 ~~~~a~~ri~~~ld~~~~~~~~~~-~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL 494 (637)
++..+++|+++++|.+|+.+..+. +..+.+..++|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl 460 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHH
Confidence 999999999999998876543322 2233345689999999999998777789999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHc
Q 006650 495 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574 (637)
Q Consensus 495 ~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~ 574 (637)
++||+|+|+|++|+|++||+|+++++.++||++||||+|||+||+|||||||+||+ +++++|++++||+.|++++||++
T Consensus 461 l~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~-~~~~~~~v~~a~~~a~l~~~i~~ 539 (1321)
T 4f4c_A 461 ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK-EGITREEMVAACKMANAEKFIKT 539 (1321)
T ss_dssp HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhc-ccchHHHHHHHHHHccchhHHHc
Confidence 99999999999999999999999999999999999999999999999999999994 68999999999999999999999
Q ss_pred CCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 575 LPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 575 lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
||+||||.|||+ +||||||||||||||+|+||+||||||||||||++||+.|++++.+.
T Consensus 540 lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 540 LPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp STTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred CCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 999999999995 99999999999999999999999999999999999999999997543
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8e-86 Score=749.77 Aligned_cols=510 Identities=24% Similarity=0.357 Sum_probs=452.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (637)
Q Consensus 121 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~~~~~ 199 (637)
+++++|++++++.+++++++.++.+++.+..|+++...++.... .+...+.....+++++.++..++.+++.++..+.+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999888865422 12222222223334444556667778888888899
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006650 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (637)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~lv~l~ 279 (637)
.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (637)
Q Consensus 280 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (637)
++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888889999999999999999999999999999999999999999999888877666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 006650 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (637)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~ 439 (637)
...++.....++++++|++++..|.+++|.++++..|...+..|+..+...+..+.++..+++|++++++.+++.++...
T Consensus 252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 331 (587)
T 3qf4_A 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 55556666777888999999999999999999999999999999999999999999999999999999998765433222
Q ss_pred ccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
....++..+.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 22223445789999999999754 35799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHH
Q 006650 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (637)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIa 597 (637)
+.+++|++|+||||||++|++||+|||++| .++.++++++++++.++++++++++|+||||.+|++ +||||||||+|
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWG-REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTT-CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhcc-CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 999999999999999999999999999999 457899999999999999999999999999999984 99999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++||+|||||||||+||+++|+.|++.+.+
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998644
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.7e-85 Score=746.42 Aligned_cols=510 Identities=27% Similarity=0.381 Sum_probs=451.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-h---HHHH----HHHHHHHHHHHHHHHHHHHHH
Q 006650 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-E---AMVF----HKSSRFLVLLCVTSGIFSGLR 191 (637)
Q Consensus 120 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~-~---~~~~----~~~~~~l~~l~~~~~v~~~i~ 191 (637)
++++++|++++++.++.++++.++..+..+..|+++...++..... + .... ......+.++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999888877643211 1 1111 111112222334455667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006650 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (637)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw 271 (637)
.++..+.+.++..++|.++|+|++++|++||++.++|++++|+++|++.+++.+...+..++.+++.+++++++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888899999999999999999999999999999999999999999999999888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 006650 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (637)
Q Consensus 272 ~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (637)
++++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889899999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006650 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (637)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~ 431 (637)
...+........+..+..++++++|++++..|++|+|+++++..|...+..|+..+...+..+.++..+++|++++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77666666666666667788899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
++..+.....+.+...++|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 7543322222223345789999999999863 357999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCC
Q 006650 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (637)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LS 589 (637)
||+|+++++.+++|++||||+|||++|++||+|||++|. ++.++++++++++.++++++++++|+||||.+||+ +||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 999999999999999999999999999999999999994 57889999999999999999999999999999984 999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||||+||||||++||++||||||||+||+++|+.|++.+.
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 521 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD 521 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999864
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-85 Score=748.24 Aligned_cols=513 Identities=25% Similarity=0.411 Sum_probs=457.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (637)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~ 194 (637)
.+..+++++++++++++.++.++++.++.+++.+..|++++..++.... .+...+......++++.++..++.+++.++
T Consensus 21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 21 PTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999998888765421 111122222233344455666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006650 195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (637)
Q Consensus 195 ~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~ 274 (637)
....+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++.+...+..++..++.+++++++++.++|+++
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 180 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS 180 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354 (637)
Q Consensus 275 lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (637)
+++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....
T Consensus 181 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (598)
T 3qf4_B 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS 260 (598)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 006650 355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN 434 (637)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~ 434 (637)
+........+..+..++++++|++++..|.+++|++++++.|...+..|+..+...+..+.++..+++|++++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 66666656666666778889999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 006650 435 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (637)
Q Consensus 435 ~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 514 (637)
+. +.....++..++|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+
T Consensus 341 ~~-~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 341 DD-PDAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp CC-SSCCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred CC-CCCCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 32 2222223445789999999999743 47999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHH
Q 006650 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (637)
Q Consensus 515 di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQ 592 (637)
|+++++.+++|++||||+|||++|++||+|||.+|+ ++.++++++++++.++++++++++|+||||.+|| .+|||||
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN-PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS-TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCC-CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 999999999999999999999999999999999994 5788999999999999999999999999999998 4999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+||||||+++|+|||||||||+||+++|+.|++.+.+
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998744
No 5
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4e-84 Score=737.78 Aligned_cols=516 Identities=31% Similarity=0.478 Sum_probs=449.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE---A-MVFHKSSRFLVLLCVTSGIFSGLRS 192 (637)
Q Consensus 117 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~---~-~~~~~~~~~l~~l~~~~~v~~~i~~ 192 (637)
++.+++++++.+++++.++.++++.++.+++.+..|+++...++...... . .........++++.++..++.+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (595)
T 2yl4_A 4 LPEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRV 83 (595)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998888888899988999998877775432110 0 0111111222333444556677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006650 193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (637)
Q Consensus 193 ~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~ 272 (637)
++....+.++..++|.++|+|++++|++||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+
T Consensus 84 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (637)
Q Consensus 273 l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (637)
+++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006650 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (637)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~ 432 (637)
..+.......++..+..++++++|++++..|++|+|+++++..|...+..|+..+...+..+.++..+++|++++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666665555555666778899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCccccccccCCCc-EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 433 SNQFLSEGVKLQRLMGH-VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 433 ~~~~~~~~~~~~~~~~~-I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
+.++.......++..++ |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 324 KLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred ccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 53321111111223467 99999999998643346999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCC--CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--C
Q 006650 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--L 587 (637)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~--~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~ 587 (637)
||+|+++++.+++|++||||+|||++|++||+|||++|.+. +.++++++++++.++++++++++|+||||.+||+ +
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 99999999999999999999999999999999999999432 2789999999999999999999999999999984 9
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||||+||||||++||++||||||||+||+++|+.|++.+.+
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998644
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.2e-83 Score=732.16 Aligned_cols=513 Identities=28% Similarity=0.423 Sum_probs=451.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (637)
Q Consensus 117 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~ 195 (637)
++.+++++++.+++++.+++++++.++.+++.+..|+++...++..... +..........++++.++..++.+++.++.
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999998888888999999999999888777543211 111111111112233445566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006650 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (637)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~l 275 (637)
...+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (637)
Q Consensus 276 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (637)
++++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888899999999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 006650 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (637)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~ 435 (637)
.......++..+..++++++|++++..|++|+|++++++.|...+..|+..++..+..+.++..+++|++++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 76666666666677778899999999999999999999999999999999999999999999999999999999776532
Q ss_pred CCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 006650 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (637)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 515 (637)
. ...+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 330 N--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 1 111222234679999999999753 2469999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHH
Q 006650 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (637)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQk 593 (637)
+++++.+++|++||||||||++|++||+|||++|..++.++++++++++.++++++++++|+||||.+|++ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 99999999999999999999999999999999994246789999999999999999999999999999984 9999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+||||||++||++||||||||+||+++|+.|++.+.+
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998644
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.5e-86 Score=812.81 Aligned_cols=513 Identities=28% Similarity=0.373 Sum_probs=427.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR--EEA-MVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (637)
Q Consensus 120 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~--~~~-~~~~~~~~~l~~l~~~~~v~~~i~~~~~~ 196 (637)
+.+++.+.+++++.+++++++.++........+.++...+..... .+. .........+++++++.+++.+++.++..
T Consensus 740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 819 (1321)
T 4f4c_A 740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMG 819 (1321)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999888887776666655555555555554432211 110 00111222334455666778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006650 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (637)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~ 274 (637)
..+.++..++|.++|++++++|++|||. +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 820 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHH
Confidence 9999999999999999999999999986 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354 (637)
Q Consensus 275 lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (637)
+++++++|+++++..++.++.++...+..+..++....+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 900 lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1321)
T 4f4c_A 900 LLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQ 979 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877776665555555566677888889999999999999999999999999999999888887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006650 355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTK--YVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (637)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a--~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~ 432 (637)
+........+.....++++++|++++..|..+.+.+.. ++.+......++..+...+..+.++..+.+|++++++.++
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1059 (1321)
T 4f4c_A 980 GLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKIS 1059 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 65555555555566677888999999888876654433 3333333344555566677888899999999999999887
Q ss_pred CCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 006650 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (637)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 512 (637)
+.+..+......+..|+|+|+||+|+||++++.+||+||||+|+|||+|||||+||||||||+++|+|||+|++|+|+||
T Consensus 1060 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iD 1139 (1321)
T 4f4c_A 1060 KIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFID 1139 (1321)
T ss_dssp SSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEET
T ss_pred cCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEEC
Confidence 65433333333445689999999999998777789999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCC
Q 006650 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (637)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LS 589 (637)
|+|+++++.++||++|++|||||+||+|||||||+||. +++++|||+++||++|+++|||++||+||||.|||+ +||
T Consensus 1140 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred CEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 99999999999999999999999999999999999994 457899999999999999999999999999999994 999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 590 GGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||||||||||+|||+||||||||||||++||+.|+++|.+
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999743
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-83 Score=731.11 Aligned_cols=513 Identities=28% Similarity=0.431 Sum_probs=452.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (637)
Q Consensus 117 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~v~~~i~~~~~ 195 (637)
++.+++++++.+++++.++.++++.++.+++.+..|+++...++.... .+..........++++.++..++.+++.++.
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999888888899999999999988877764321 1111111111112333445566777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006650 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (637)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~l~l 275 (637)
...+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 169 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (637)
Q Consensus 276 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (637)
++++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 170 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888889898999999999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 006650 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (637)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~ 435 (637)
.......++..+..++++++|++++..|++|+|++++++.|...+..|+..+...+..+.++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666666677778889999999999999999999999999999999999999999999999999999999876532
Q ss_pred CCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 006650 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (637)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 515 (637)
+ ...+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 330 E--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp C--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred C--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 2 111222334679999999999743 2469999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHH
Q 006650 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (637)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQk 593 (637)
+++++.+++|++||||||||++|++||+|||.+|..++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred ccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 99999999999999999999999999999999994246789999999999999999999999999999984 9999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+||||||++||++||||||||+||+++|+.|++.+.+
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998644
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.8e-82 Score=773.10 Aligned_cols=512 Identities=33% Similarity=0.486 Sum_probs=448.2
Q ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------------------HHHHHHHHHH
Q 006650 119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE---------------------AMVFHKSSRF 176 (637)
Q Consensus 119 ~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~~---------------------~~~~~~~~~~ 176 (637)
.++++++|.. ++++.+++++++.++.++.....|.+++..++...... .........+
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 3577888885 46677777788888877777777777766554321100 0011112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (637)
Q Consensus 177 l~~l~~~~~v~~~i~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (637)
+++++++..++.+++.++....+.++..++|.++|+|++++|++|||++++|++++|+++|++.+++.+...+..++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 193 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHH
Q 006650 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (637)
Q Consensus 257 l~~v~~~i~l~~~sw~l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~ 336 (637)
+++++.++++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|+++|+++||+||.|+.+.++|
T Consensus 194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~ 273 (1284)
T 3g5u_A 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273 (1284)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (637)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~ 416 (637)
++..++..+...+.....+.......++.....++++|+|++++..|.+++|+++++..+......|+..+...+..+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1284)
T 3g5u_A 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN 353 (1284)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887766666666666666667788899999999999999999998888877888888888888899999
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-ccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHH
Q 006650 417 SIGATEKVFQLIDLLPSNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (637)
Q Consensus 417 ~~~a~~ri~~~ld~~~~~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~ 495 (637)
+..+++|++++++.+|+.+.. +.+..++...++|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+
T Consensus 354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999987764321 1222223446789999999999876556799999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcC
Q 006650 496 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL 575 (637)
Q Consensus 496 ~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~l 575 (637)
++|+|+|+|++|+|.+||+|+++++.+++|++||||+|||+||++||+|||.+| .++++++++++|++.++++++|+++
T Consensus 434 ~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g-~~~~~~~~~~~~~~~~~~~~~i~~l 512 (1284)
T 3g5u_A 434 QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDEIEKAVKEANAYDFIMKL 512 (1284)
T ss_dssp HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHH-CSSCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999 4578999999999999999999999
Q ss_pred CCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 576 PCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 576 P~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|+||||.+||+ +|||||||||||||||++||+|||||||||+||+++|+.|++.+.
T Consensus 513 ~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570 (1284)
T ss_dssp TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH
T ss_pred cccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999984 999999999999999999999999999999999999999999863
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-75 Score=714.27 Aligned_cols=513 Identities=31% Similarity=0.422 Sum_probs=437.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-----EAMVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (637)
Q Consensus 120 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~i~~P~~l~~~i~~~~~~-----~~~~~~~~~~~l~~l~~~~~v~~~i~~~~ 194 (637)
+.+++++.+++++.+++++++.++.++.....|.++...+...... ..........++++++++..++.+++.++
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 772 (1284)
T 3g5u_A 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT 772 (1284)
T ss_dssp TTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889988888888887777777777777666554321110 00111112223334455556667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006650 195 FSIANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (637)
Q Consensus 195 ~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~l~~v~~~i~l~~~sw~ 272 (637)
....+.++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus 773 ~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 889999999999999999999999999995 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (637)
Q Consensus 273 l~lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (637)
+++++++++|+++++..+..++.++...+.++..++....+.|+++|+++||+|+.|+.+.++|.+..+...+...+...
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888877777888888889999999999999999999999999999999988888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006650 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (637)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~ 432 (637)
..+........+.....++++++|++++..|.+++|.++++..+......++..+......+.++..+.+|++++++.+|
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666666666666677788999999999999999999988888777777766666666667788899999999999877
Q ss_pred CCCCCc-cccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 433 SNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 433 ~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
+....+ .+..+....+.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i 1092 (1284)
T 3g5u_A 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092 (1284)
T ss_dssp SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEES
T ss_pred cccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 643221 1122223457899999999998754457999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CC
Q 006650 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588 (637)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~L 588 (637)
||+|+++++.+++|++|+||||||.+|++||+|||++|.+ ...++++++++++.++++++++++|+||||.|||+ +|
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred CCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 9999999999999999999999999999999999999953 24789999999999999999999999999999984 89
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 589 SGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||||+||||||+++|+|||||||||+||+++|+.|++.+.+
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998743
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-57 Score=475.76 Aligned_cols=218 Identities=38% Similarity=0.567 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcH
Q 006650 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGK 491 (637)
Q Consensus 412 ~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGK 491 (637)
.++.++..+++|++++++.+++..+.+.........+.|+|+||+|+|+++ .++|+||||+|++||++||||||||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGK 93 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGK 93 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCchH
Confidence 455667788999999998766533222222222335689999999999753 469999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHH
Q 006650 492 STFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571 (637)
Q Consensus 492 STL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~f 571 (637)
|||+++|+|+|+|++|+|++||+|+.+++.+++|++||||+|+++||++||+|||.+| .+..++++++++++.++++++
T Consensus 94 STLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~-~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 94 STILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYG-RVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTT-STTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhh-cccCCHHHHHHHHHHhCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 457889999999999999999
Q ss_pred HHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 572 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 572 I~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+..+|+||||.+|+. +|||||||||||||||+++|+|||||||||+||+++|+.|++.+.+
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999984 9999999999999999999999999999999999999999998644
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-48 Score=396.19 Aligned_cols=183 Identities=46% Similarity=0.697 Sum_probs=171.1
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
-+|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999532 2369999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
||||+|++.+|++|++|||.++. +..+++++.++++.++++++++++|+||++.+++ .+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999983 4567889999999999999999999999999998 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++||||||||+||+++++.|.+.+.+
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998644
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.3e-47 Score=389.96 Aligned_cols=183 Identities=39% Similarity=0.640 Sum_probs=169.7
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
+.|+++||+|+|+++...++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||+|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999998 8999999999998888899999
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~ 605 (637)
|+||+|++.+|++|++|||.++. ...+++++.++++.+++.+++..+|+|+||.+++. +||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGK-LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccC-CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999984 35567889999999999999999999999999873 9999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++||||||||+||+++++.+.+.+.+
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~ 200 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVED 200 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999987643
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.7e-47 Score=391.03 Aligned_cols=185 Identities=41% Similarity=0.712 Sum_probs=169.5
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.+.|+++||+|+|+++.+.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999997522246999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEccCCccccccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~d-e~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALl 603 (637)
+|+||+|++.+|+.|++|||.++. ....+ +++.++++.++++++++.+|+|+++.+++ .+||||||||++|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTC-SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhc-ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999984 34444 77888899999999999999999999887 499999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|++||||||||+||++++..|.+.|.+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999997643
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.2e-48 Score=391.18 Aligned_cols=181 Identities=39% Similarity=0.652 Sum_probs=168.7
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 7899999999532 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCC
Q 006650 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 607 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~ 607 (637)
||+|++.+|++|++|||.++..+..+++++.++++.++++++++++|+|++|.+++. +||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999972235678889999999999999999999999999984 999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+||||||||+||+++++.|.+.+.+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998644
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-45 Score=393.14 Aligned_cols=181 Identities=25% Similarity=0.439 Sum_probs=169.7
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.+.|+++||+|+|++. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|++||+|+.+++.+.+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4679999999999743 2469999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcC
Q 006650 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 604 (637)
Q Consensus 527 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk 604 (637)
.||||+|++.||++|++|||.+. . ...+++++++++.+++++++++.|.+|+|.+++. +||||||||+||||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~-~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPN-A-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTT-C-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhc-c-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999866 2 4568899999999999999999999999999984 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|++||||||||+||+.++..+++.+.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~ 199 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLK 199 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.9e-44 Score=359.83 Aligned_cols=168 Identities=27% Similarity=0.451 Sum_probs=153.7
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
+.|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999742 24699999999999999999999999999999999999999999999998 4
Q ss_pred eEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 006650 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 528 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~ 605 (637)
|+||+|++.+|++|++|||.++. ...+.+..++++..++.++++.+|.|++|.+++ .+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999983 234556777888899999999999999999987 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++||||||||+||+++++.+.+.++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~ 174 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCV 174 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCC
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999988643
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=358.20 Aligned_cols=167 Identities=28% Similarity=0.508 Sum_probs=152.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999642 24699999999999999999999999999999999999999999999999 49
Q ss_pred EEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCC
Q 006650 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p 606 (637)
+||+|++.+|+.|++|||.++. ...+++..++++.+++.+.+..+|.|++|.+++. +||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTS--CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcc--ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999983 2345667788888899899999999999999874 99999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++||||||||+||++++..+.+.+.
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred CEEEEeCcccccCHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.5e-44 Score=359.37 Aligned_cols=173 Identities=36% Similarity=0.493 Sum_probs=143.8
Q ss_pred EEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----
Q 006650 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 524 (637)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l---- 524 (637)
|+++||+|+|+++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2359999999999999999999999999999999999999999999999999999997764
Q ss_pred hcceEEEccCCccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHH
Q 006650 525 REKIGFVGQEPQLLQM-DIKSNIMYGC----PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~g-TI~eNI~~g~----~~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQk 593 (637)
|++||||+|++.+|.. |++||+.++. ....+. +++.++++..++.+.. ... ..||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4579999999999987 9999998741 011222 3344555555543221 122 47999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||++|||||+++|++||||||||+||+++...+.+.+.+
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 190 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997643
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5.6e-43 Score=360.85 Aligned_cols=172 Identities=29% Similarity=0.458 Sum_probs=144.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~i~~~~lR~ 526 (637)
-|+++||+|+|+++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 49999999999753 35999999999999999999999999999999999999999999999999994 334567899
Q ss_pred ceEEEccCC--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 527 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 527 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~d----e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
+||||+|+| .+|..|++|||.++.. ...+. +++.++++..++.++.++.| ..||||||||++||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc---------ccCCHHHHHHHHHH
Confidence 999999997 5889999999998621 12233 34555666666544332211 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||+.+|++||||||||+||+.+...+.+.+.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999763
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.4e-43 Score=371.14 Aligned_cols=175 Identities=31% Similarity=0.434 Sum_probs=149.9
Q ss_pred CcEEEEEEEEECCCCC-CcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---
Q 006650 448 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 523 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~--- 523 (637)
.-|+++||+++|+++. ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997432 235999999999999999999999999999999999999999999999999999998765
Q ss_pred HhcceEEEccCCccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 524 LREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 524 lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
+|++||||+|++.+|.. |++|||.++.. ...+ ++++.++++.+++.++.++.| ..||||||||++
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 47899999999999965 99999988621 1122 345667777777765544433 479999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||||+.+|++||||||||+||+++...|.+.+.
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~ 207 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLK 207 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999753
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-42 Score=350.47 Aligned_cols=175 Identities=21% Similarity=0.367 Sum_probs=144.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~l-R~~ 527 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 369999999999999999999999999999999999999999999999999998887665 456
Q ss_pred eEEEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk 604 (637)
||||+|++.+|.+ |++||+.++.....+.++..+.++ +.++.++ |++...+. ..||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 999999997312222233322222 2333332 33333333 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++||||||||+||+++.+.+.+.+.+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998643
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.3e-42 Score=346.43 Aligned_cols=171 Identities=32% Similarity=0.431 Sum_probs=143.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~---lR 525 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998887653 34
Q ss_pred -cceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 526 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
++|+||+|++.+|. .|++||+.++.. .... ++++.++++..++.++.++.| ..||||||||++|
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 151 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAI 151 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 78999999999986 599999988521 1111 234555666655543322211 3799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||+.+|++||||||||+||+++...+.+.+.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 184 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFL 184 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999763
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.7e-42 Score=352.69 Aligned_cols=172 Identities=34% Similarity=0.457 Sum_probs=145.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~i~~~~lR~ 526 (637)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. +.+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 36999999999999999999999999999999999999999999999999985 445667889
Q ss_pred ceEEEccCCccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 527 ~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
+||||+|++.+|.. |++||+.++. ....+ ++++.++++..++.++.++.| ..||||||||++||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP---------DSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999976 9999998851 11222 245566677666654432221 47999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+.+|++||||||||+||+++.+.+.+.+.+
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997633
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.1e-42 Score=353.10 Aligned_cols=171 Identities=27% Similarity=0.381 Sum_probs=149.8
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcc-ccccHHHHHhcCCCC---CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 529 GFVGQEPQL-LQMDIKSNIMYGCPK---DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 529 ~~V~Qd~~L-F~gTI~eNI~~g~~~---~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
+||+|++.+ |+.|++||+.++... ...++++.++++..++.++.++.| ..||||||||++|||||++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY---------RVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG---------GGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 999999987 788999999987321 223456777777776644322211 3799999999999999999
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 605 ------DPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 605 ------~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+|++||||||||+||+++...+.+.+.
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999764
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7e-42 Score=349.36 Aligned_cols=173 Identities=24% Similarity=0.335 Sum_probs=148.1
Q ss_pred CCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+ ....+|+
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh
Confidence 356999999999963 369999999999999999999999999999999999999999999999999977 5677899
Q ss_pred ceEEEccCCccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
+||||+|++.+|.+ |++||+.++.. ...+ ++++.++++..++.++.++.| ..||||||||++|||
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV---------STYSKGMVRKLLIAR 159 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG---------GGCCHHHHHHHHHHH
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 99999999999987 99999987521 0122 245667777777765543321 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||+++|++||||||||+||+++...+.+.+.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998643
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-41 Score=349.11 Aligned_cols=171 Identities=29% Similarity=0.432 Sum_probs=149.2
Q ss_pred EEEEEEEEECCCCCC--cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
|+++||+|+|+.+.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 899999999962111 3699999999999999999999999999999999999999999999999998652 77899
Q ss_pred eEEEccCC--ccccccHHHHHhcCCC----CCCCHHHHHHHHHHcCHH--HHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 528 IGFVGQEP--QLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 528 I~~V~Qd~--~LF~gTI~eNI~~g~~----~~~~de~v~~A~~~a~l~--~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
||||+|++ .+|+.|++||+.++.. ....++++.++++..++. ++.++.| ..||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHHH
Confidence 99999996 5789999999998731 122356788899999987 7766554 57999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||+++|++||||||||+||+++.+.+.+.+.+
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 183 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEK 183 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997643
No 28
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.5e-42 Score=353.41 Aligned_cols=172 Identities=24% Similarity=0.341 Sum_probs=144.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~i~~~~lR~ 526 (637)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999964 36999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ceEEEccCCcc-ccc--cHHHHHhcCCCC------CCCH---HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 527 KIGFVGQEPQL-LQM--DIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 527 ~I~~V~Qd~~L-F~g--TI~eNI~~g~~~------~~~d---e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
+||||+|++.+ |.. |++|||.++... ...+ +++.++++..++.++.++ .+ ..|||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~--~~LSgGqkq 168 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-------YI--GYLSTGEKQ 168 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTS-------BG--GGSCHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC-------Ch--hhCCHHHHH
Confidence 99999999875 555 999999987311 1122 345556666655433221 11 379999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++|||||+++|++||||||||+||+++.+.+.+.+.+
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~ 206 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDS 206 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997643
No 29
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.4e-42 Score=349.01 Aligned_cols=174 Identities=25% Similarity=0.405 Sum_probs=142.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~ 527 (637)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+. +.+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4999999999964 369999999999999999999999999999999999999999999999999988775 356788
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCCC---C-----------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCCh
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~~---~-----------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSG 590 (637)
||||+|++.+|. .|++||+.++... . .+.++.. ..+.+.++.+ |++..... ..|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999986 6999999987321 1 1111111 1123334433 34443333 38999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||++|||||+++|++||||||||+||+++.+.+.+.+.+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997643
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-42 Score=340.23 Aligned_cols=164 Identities=27% Similarity=0.441 Sum_probs=142.1
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|+++||+++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. .+|+.
T Consensus 9 ~~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 36999999999953 5999999999999999999999999999999999999999999999999986 36889
Q ss_pred eEEEccCCccccc-cHHHHHhcCCC--C-CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQM-DIKSNIMYGCP--K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA 601 (637)
Q Consensus 528 I~~V~Qd~~LF~g-TI~eNI~~g~~--~-~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARA 601 (637)
|+||+|++.+|.+ |++||+.++.. . ...++++.++++..++ +.. +. ..||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHH
Confidence 9999999999986 99999988521 0 1235667777766654 333 22 4899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++||||||||+||+++...+.+.+.+
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998643
No 31
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-41 Score=348.36 Aligned_cols=171 Identities=33% Similarity=0.427 Sum_probs=147.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC----------C
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT----------D 518 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~----------~ 518 (637)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. +
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 3999999999963 36999999999999999999999999999999999999999999999999986 2
Q ss_pred CCH---HHHhcceEEEccCCccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHHH-HHcCCCCcccccCCCC
Q 006650 519 LDI---RWLREKIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 587 (637)
Q Consensus 519 i~~---~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~~----de~v~~A~~~a~l~~f-I~~lP~G~dT~vge~~ 587 (637)
++. ..+|++||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++ .++.| ..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 443 3568899999999999976 9999998851 11222 3457778888888776 44432 47
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 588 LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.+.
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~ 197 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999763
No 32
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.6e-41 Score=352.59 Aligned_cols=185 Identities=26% Similarity=0.401 Sum_probs=144.8
Q ss_pred HHHHHhhcCCCCCCCccccccccCCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 423 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 423 ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
|+.++++.+.+... . .......+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNN--N-RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccc--c-ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 66777776543221 1 1112233569999999964 25999999999999999999999999999999999999
Q ss_pred CCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccc
Q 006650 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582 (637)
Q Consensus 503 ~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~ 582 (637)
+|++|+|.+|| +|+||+|++.+|++|++|||. + . ...+.++.++++..++.++++.+|++++|.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~-~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-G-V-SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-T-T-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-C-c-ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999998 599999999999999999999 6 2 234556777888899999999999999999
Q ss_pred cCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 583 VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 583 vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
+++ ..||||||||++|||||+++|++||||||||+||+.++..+.+.++
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll 203 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCC
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 987 4999999999999999999999999999999999999999988643
No 33
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-41 Score=361.05 Aligned_cols=174 Identities=30% Similarity=0.526 Sum_probs=147.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--i~~~~lR~ 526 (637)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999832 22335678
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
+||||+|++.||. .|++|||.|+... .. .++++.++++..++.++.++.| ..||||||||+||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 8999999999995 5999999997321 11 2346777788877766554443 479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 601 AILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 601 ALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
||+.+|++||||||||+||+.+...+++.+.+..
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765543
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.2e-41 Score=340.97 Aligned_cols=166 Identities=21% Similarity=0.274 Sum_probs=148.1
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.+||+++.+.+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999996 4899999999999999999999999999999999999999 99999999999888899999999
Q ss_pred EEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC-
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA- 607 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~- 607 (637)
||+|++.+|.+ |++||+.++.....+++++.++++..++.++.++. -..||||||||++|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB---------GGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHHcCCCc
Confidence 99999999875 99999999732222477888888888876654321 14799999999999999999999
Q ss_pred ------EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 608 ------ILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 608 ------ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+||||||||+||+.+.+.+.+.+.+
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999997643
No 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.9e-41 Score=360.08 Aligned_cols=170 Identities=28% Similarity=0.456 Sum_probs=147.0
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999988765 5789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHHH
Confidence 99999999996 599999998621 1222 345667777777765544433 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++||||||||+||+.+...+.+.+.+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999987643
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-40 Score=354.72 Aligned_cols=170 Identities=29% Similarity=0.523 Sum_probs=148.7
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 3699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.++.| .+||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 499999999732 1111 356778888888876655544 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++||||||||+||+.+...+.+.+.+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998643
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-40 Score=354.04 Aligned_cols=172 Identities=31% Similarity=0.519 Sum_probs=148.2
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|+++||+++|+++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+. .|+.
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 369999999999422 369999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 528 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
||||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.++.| .+||||||||+|||||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 999999999997 599999998621 1122 356777888887766655443 4799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|+++|++||||||||+||+.+...+.+.|.+
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999987643
No 38
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-40 Score=337.71 Aligned_cols=166 Identities=28% Similarity=0.425 Sum_probs=140.4
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+|+|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.+||+++.+.. .+|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999997643 4578899
Q ss_pred EEccCCccccc-cHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~~~---~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
||+|++.+|.. |++||+.++.... ..++++.++++..++.++.++.| .+||||||||++|||||+++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP---------ARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG---------GGSCHHHHHHHHHHHHHTTC
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 99999999987 9999999973210 11345566666666544332222 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|++||||||||+||+++.+.+.+.+.+
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998643
No 39
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.2e-41 Score=356.12 Aligned_cols=170 Identities=33% Similarity=0.516 Sum_probs=146.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999953 3699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEccCCccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---------WQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 999999999964 99999998621 1122 345677777777765544433 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++||||||||+||+.+...+.+.+.+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999987643
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.2e-41 Score=342.84 Aligned_cols=170 Identities=24% Similarity=0.308 Sum_probs=136.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hc
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 526 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~i~~~~l-R~ 526 (637)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999964 3699999999999999999999999999999999999 89999999999999998887665 45
Q ss_pred ceEEEccCCccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcCHH-HHHHcCCCCcccccCCCC-CChHHHHH
Q 006650 527 KIGFVGQEPQLLQM-DIKSNIMYGCP----KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL-LSGGQKQR 595 (637)
Q Consensus 527 ~I~~V~Qd~~LF~g-TI~eNI~~g~~----~~~~----de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~-LSGGQkQR 595 (637)
.++||+|++.+|.+ |++||+.++.. .... ++++.++++..+++ ++. +..+ .. ||||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~--~~~LSgGqkQr 151 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-------SRYL--NEGFSGGEKKR 151 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-------GSBT--TCC----HHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-------cCCc--ccCCCHHHHHH
Confidence 69999999999975 99999987520 0111 23444555555441 221 2222 34 99999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++|||||+++|++||||||||+||+++...+.+.+.
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 187 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN 187 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999763
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.6e-40 Score=353.90 Aligned_cols=170 Identities=32% Similarity=0.528 Sum_probs=143.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 529 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999999832 1122 245777888888776655544 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 603 LRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 603 lk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+++|++||||||||+||+.+...+.+.+.+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999997643
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-40 Score=352.00 Aligned_cols=168 Identities=31% Similarity=0.503 Sum_probs=146.9
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
|+++||+++|++ . +|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+... .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999952 4 9999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEccCCccccc-cHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 530 FVGQEPQLLQM-DIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 530 ~V~Qd~~LF~g-TI~eNI~~g~~--~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
||+|++.+|.. |++|||.|+.. ....++++.++++..++.++.++.| .+||||||||+||||||+++|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999999975 99999998621 0112377888888888766554443 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++||||||||+||+.+...+.+.+.+
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 43
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-40 Score=355.02 Aligned_cols=172 Identities=32% Similarity=0.446 Sum_probs=147.6
Q ss_pred cEEEEEEEEECCCCCCcC--cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---HHH
Q 006650 449 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW 523 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~--vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~---~~~ 523 (637)
.|+++||+++|++ .. +|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 36 999999999999999999999999999999999999999999999999986621 234
Q ss_pred HhcceEEEccCCccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 524 LREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 524 lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
.|++||||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++.++.| .+||||||||+|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 57899999999999975 99999999732 1122 346777888888776655443 479999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
|||||+++|++||||||||+||+.+...+.+.+.+
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998643
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.4e-40 Score=352.55 Aligned_cols=170 Identities=31% Similarity=0.465 Sum_probs=145.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC------CCHH
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 522 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~------i~~~ 522 (637)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 4899999999953 369999999999999999999999999999999999999999999999999876 554
Q ss_pred HHhcceEEEccCCcccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 006650 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (637)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI 596 (637)
.+++||||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++.++.| ..||||||||+
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 3678999999999995 699999998621 1122 245677777777766554433 47999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 597 AIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 597 aIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||||+++|++||||||||+||+.+...+.+.+.+
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987643
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-40 Score=338.21 Aligned_cols=167 Identities=21% Similarity=0.290 Sum_probs=141.7
Q ss_pred EEEEEEEEECCCC-CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
|+++||+++|+++ ...++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.+||+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 01369999999999 9999999999999999999999999 9999999999998765 33 7899
Q ss_pred E-EEccCCccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 529 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 529 ~-~V~Qd~~LF~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~-~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
+ ||+|++.+ +.|++||+.++.. .+..++++.++++..+++ ++.++. -..||||||||++|||||+++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRK---------LYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSB---------GGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCC---------hhhCCHHHHHHHHHHHHHHhC
Confidence 9 99999999 9999999998621 134567777777777654 332211 148999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 606 PAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|++||||||||+||+++.+.+.+.+.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~ 172 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIK 172 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred CCEEEEECCccccCHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.3e-40 Score=334.08 Aligned_cols=160 Identities=29% Similarity=0.401 Sum_probs=136.4
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 38999999999622 3699999999999999999999999999999999999999999998 46789
Q ss_pred EEEccCCccc-cccHHHHHhcCCCC---------CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 529 GFVGQEPQLL-QMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 529 ~~V~Qd~~LF-~gTI~eNI~~g~~~---------~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
|||+|++.+| +.|++||+.++... ...++++.++++..++.++.++.| .+||||||||++|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF---------TSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh---------hhCCHHHHHHHHH
Confidence 9999999988 77999999987311 111345677777777665543311 4799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 599 ARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 599 ARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
||||+++|++||||||||+||+++...+.+.+.+
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997643
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.8e-40 Score=336.52 Aligned_cols=175 Identities=26% Similarity=0.281 Sum_probs=139.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-h
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 525 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~i~~~~l-R 525 (637)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||+++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 3699999999999999999999999999999999999 68999999999999988887665 4
Q ss_pred cceEEEccCCccccc-cHHHHHhcCC--------CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC---C-CCChHH
Q 006650 526 EKIGFVGQEPQLLQM-DIKSNIMYGC--------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD---D-LLSGGQ 592 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~g-TI~eNI~~g~--------~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge---~-~LSGGQ 592 (637)
+.|+||+|++.+|.+ |++||+.++. .+..+.++..+ .+.+.++.+ |+++...+ . .|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999999876 8999987531 11123322211 122233332 34332222 2 499999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
|||++|||||+++|++||||||||+||+++.+.+.+.+ +.+
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l-~~l 210 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV-NSL 210 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999875 444
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.1e-37 Score=322.63 Aligned_cols=198 Identities=15% Similarity=0.187 Sum_probs=166.1
Q ss_pred HHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccCCCcEEEEEEEEE
Q 006650 379 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458 (637)
Q Consensus 379 lv~~g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~~~~~~I~f~nVsF~ 458 (637)
....+..+-+.+.+|+.+..+ ..++..++..+..+.++..+.+|+.++++.+++.... .+ ..+...+.|+++||+|+
T Consensus 34 ~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~~-~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 34 EYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-EG-SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-SC-CTHHHHHHHHHTTCCHH
T ss_pred HHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC-cccccCCeEEEEEEEEE
Confidence 344566777888999888777 4788888989999999999999999999875432111 11 11122346999999999
Q ss_pred CCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccc
Q 006650 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538 (637)
Q Consensus 459 Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 538 (637)
|+ .++|+|+||+|+||+++|||||||||||||+++|+|+| +|+| +++|+|++++|
T Consensus 111 y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf 165 (305)
T 2v9p_A 111 TF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFW 165 (305)
T ss_dssp HH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGG
T ss_pred cC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccc
Confidence 96 36999999999999999999999999999999999999 8999 46789999999
Q ss_pred cccHHH-HHhcCCCCCCCHHHHHHHHHHcCHHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 006650 539 QMDIKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (637)
Q Consensus 539 ~gTI~e-NI~~g~~~~~~de~v~~A~~~a~l~~fI~~-lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTS 616 (637)
++|++| ||.++ + ++++ +++++|+. ||+||| ..+|||||||| ||||+++|+||| ||
T Consensus 166 ~~ti~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 166 LASLADTRAALV-D-DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGGGTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred cccHHHHhhccC-c-cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 999998 99998 3 4553 45788888 999999 45899999999 999999999999 99
Q ss_pred CCCHHHHHHHH
Q 006650 617 ALDSESEHYVK 627 (637)
Q Consensus 617 aLD~~tE~~I~ 627 (637)
+||+++|+.|+
T Consensus 223 ~LD~~~~~~i~ 233 (305)
T 2v9p_A 223 NIDVQAEDRYL 233 (305)
T ss_dssp SSCSTTCGGGG
T ss_pred CCCHHHHHHHH
Confidence 99999998875
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.5e-31 Score=296.77 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=131.4
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..++++|++++|.+ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++| +.
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence 35899999999963 368888999999999999999999999999999999999999999875 36
Q ss_pred eEEEccCCcc-ccccHHHHHhcCCCCC--CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 528 IGFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 528 I~~V~Qd~~L-F~gTI~eNI~~g~~~~--~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
|+|++|+... |..|++||+.+..... ...+.+.++++..++.++.++.| ..||||||||++|||||++
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV---------NDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBG---------GGCCHHHHHHHHHHHHHHS
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 8999999874 5899999998752211 22344555666665543322211 3799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++|||||||++||..+...|.+.|.+
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~ 430 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKR 430 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998643
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=4.2e-31 Score=299.88 Aligned_cols=158 Identities=29% Similarity=0.317 Sum_probs=128.2
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999953 3799999999999999999999999999999999999999999986 2479
Q ss_pred EEEccCCcc-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 529 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 529 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
|||||++.+ ++.|+.||+... .......+.+.++++..++.++. +..+ ..||||||||++|||||+++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------DRNV--EDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------TSBG--GGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------cCCh--hhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 678999998754 11001233445555554443221 1111 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 607 AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||||++||.++...+.+.|.+
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999997643
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=4e-31 Score=296.82 Aligned_cols=156 Identities=31% Similarity=0.323 Sum_probs=126.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999953 3699999999999999999999999999999999999999999986 2479
Q ss_pred EEEccCCcc-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 006650 529 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 529 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk 604 (637)
|||+|++.+ ++.|+.||+... .......+.+.++++..++ ...... ..||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI-----------IDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC-----------GGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 678999998653 1100122334444444333 222222 3799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++|||||||++||..+...|.+.+.+
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998643
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=3.3e-30 Score=302.45 Aligned_cols=160 Identities=24% Similarity=0.411 Sum_probs=121.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999753 246999999999999999999999999999999999999999999999872 147
Q ss_pred EEEccCCcc-----ccccHHHHHh--------------------------------------------------------
Q 006650 529 GFVGQEPQL-----LQMDIKSNIM-------------------------------------------------------- 547 (637)
Q Consensus 529 ~~V~Qd~~L-----F~gTI~eNI~-------------------------------------------------------- 547 (637)
+||+|++.. ++.|+++|+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888877531 2345555543
Q ss_pred ----------cCCC----------------------------------------CCCCHHHHHHHHHHcCHHHHHHcCCC
Q 006650 548 ----------YGCP----------------------------------------KDVKNEDIEWAAKQAYVHEFILSLPC 577 (637)
Q Consensus 548 ----------~g~~----------------------------------------~~~~de~v~~A~~~a~l~~fI~~lP~ 577 (637)
++.. ....++++.++++..+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lG---------- 888 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLG---------- 888 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTT----------
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcC----------
Confidence 2200 0011223333344433
Q ss_pred Cccccc--CC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 578 GYETLV--DD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 578 G~dT~v--ge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
++... .. ..||||||||++|||||+++|++|||||||++||+++...+.+.+.
T Consensus 889 -L~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~ 945 (986)
T 2iw3_A 889 -LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945 (986)
T ss_dssp -CCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHH
T ss_pred -CCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 33321 11 4799999999999999999999999999999999999988888753
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=4.5e-31 Score=299.63 Aligned_cols=167 Identities=23% Similarity=0.223 Sum_probs=132.5
Q ss_pred cEEE--------EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE---------EE
Q 006650 449 HVQF--------VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YI 511 (637)
Q Consensus 449 ~I~f--------~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I---------~i 511 (637)
.|++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3888 8999999643 24899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCCHHH--HhcceEEEccCCc----cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC
Q 006650 512 DGFPLTDLDIRW--LREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (637)
Q Consensus 512 dG~di~~i~~~~--lR~~I~~V~Qd~~----LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge 585 (637)
+|.++.++.... .+..+++++|+.. ++.+|++||+... . ..+++.++++..++.++.++ .+
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-~---~~~~~~~~L~~lgL~~~~~~-------~~-- 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-D---EVGKFEEVVKELELENVLDR-------EL-- 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-C---CSSCHHHHHHHTTCTTGGGS-------BG--
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-H---HHHHHHHHHHHcCCCchhCC-------Ch--
Confidence 676654321111 2346889988743 4557999999753 2 13556777777766443222 11
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
..||||||||++|||||+++|++||||||||+||+++...+.+.|.
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999988753
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1e-30 Score=293.54 Aligned_cols=166 Identities=24% Similarity=0.254 Sum_probs=127.7
Q ss_pred EEE-EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE---------EECCEeCCCC
Q 006650 450 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL 519 (637)
Q Consensus 450 I~f-~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I---------~idG~di~~i 519 (637)
.++ +||+++|++. ..+|+|+| +|++||++|||||||||||||+|+|+|+++|++|++ .++|.++.+.
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 456 5999999643 25899999 999999999999999999999999999999999996 4567655432
Q ss_pred CHHH--HhcceEEEccCCcc----ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHH
Q 006650 520 DIRW--LREKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (637)
Q Consensus 520 ~~~~--lR~~I~~V~Qd~~L----F~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQk 593 (637)
.... .+..+++++|+..+ +.+|+.||+... . ..+++.++++..++.++. +..+ ..||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~-~---~~~~~~~~l~~lgl~~~~-------~~~~--~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA-D---ETGKLEEVVKALELENVL-------EREI--QHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH-C---SSSCHHHHHHHTTCTTTT-------TSBG--GGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh-h---HHHHHHHHHHHcCCChhh-------hCCh--hhCCHHHH
Confidence 1111 23468899997654 346999998643 1 134566777777653321 2221 37999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||++|||||+.+|++||||||||+||+++...+.+.+.
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 202 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-28 Score=277.36 Aligned_cols=157 Identities=24% Similarity=0.323 Sum_probs=125.3
Q ss_pred EEEEEEECCCCCCcCcccceeEEeeCC-----CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 452 FVNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~G-----e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.++++|+|++. ..+++|+||++++| |++||+||||||||||+++|+|+++|++|+. +. +.
T Consensus 349 ~~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~ 413 (608)
T 3j16_B 349 SASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KL 413 (608)
T ss_dssp SSSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SC
T ss_pred ccceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CC
Confidence 36789999753 35899999999999 8899999999999999999999999999972 21 34
Q ss_pred ceEEEccCCc-cccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 527 KIGFVGQEPQ-LLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 527 ~I~~V~Qd~~-LF~gTI~eNI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
.++|++|+.. .|.+|++||+..... ...+.+...++++..++.++.++ .+ ..||||||||++|||||..
T Consensus 414 ~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~--~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 414 NVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQ-------EV--QHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp CEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSS-------BS--SSCCHHHHHHHHHHHHTTS
T ss_pred cEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-------Ch--hhCCHHHHHHHHHHHHHHh
Confidence 7999999965 578999999864311 12344555566666655432211 11 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++|||||||++||+++...|.+.|.+
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~ 512 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRR 512 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999987644
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.7e-27 Score=279.69 Aligned_cols=157 Identities=27% Similarity=0.369 Sum_probs=128.7
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
..|...|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 46888899999964 369999999999999999999999999999999995 665 5655421 124
Q ss_pred eEEEccCC-c-cccccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 528 IGFVGQEP-Q-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 528 I~~V~Qd~-~-LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l-~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
++|++|++ . ..+.|+.||+.+. .... ++++.++++..++ .++.++.+ ..||||||||++|||||+.
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~-~~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFES-GVGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTT-CSSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEEcccccccccCCcHHHHHHHh-hcCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 78999985 3 4467999999862 1122 7888999999988 45554422 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+|++||||||||+||+++...+.+.|.+
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999987644
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-28 Score=278.40 Aligned_cols=167 Identities=23% Similarity=0.319 Sum_probs=126.0
Q ss_pred EEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-----------EECCEeCCCCCHH
Q 006650 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDIR 522 (637)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-----------~idG~di~~i~~~ 522 (637)
|++++|.+. ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++.++...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 468999643 35788887 699999999999999999999999999999999998 4555554444344
Q ss_pred HHhcceEE--EccCCcc----cc---ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHH
Q 006650 523 WLREKIGF--VGQEPQL----LQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (637)
Q Consensus 523 ~lR~~I~~--V~Qd~~L----F~---gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQk 593 (637)
.+++.+.. .+|.... +. .++.+++... . ...++++.++++..++.++.++.+ ..||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-M-EKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-C-CSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-h-hhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 44454433 3333221 12 2677777654 2 335678888888887765544322 47999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
||++|||||+++|++||||||||+||+++...+.+.+ +.+.
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l-~~l~ 268 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII-RSLL 268 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH-HGGG
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999988865 4443
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=6.1e-28 Score=278.49 Aligned_cols=160 Identities=24% Similarity=0.361 Sum_probs=96.5
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------CceEEECCEeC
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPL 516 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~---------------------~LL~r~y~p~-------~G~I~idG~di 516 (637)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8999999998 56667777655
Q ss_pred CCCCHHHHhcceEEEccCCccc--------------------cccHHHHHhcCCCCCCCH--HH-----HHHHHHHcCHH
Q 006650 517 TDLDIRWLREKIGFVGQEPQLL--------------------QMDIKSNIMYGCPKDVKN--ED-----IEWAAKQAYVH 569 (637)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF--------------------~gTI~eNI~~g~~~~~~d--e~-----v~~A~~~a~l~ 569 (637)
.. ..|+.+++|+|.+.++ ..|++||+.+.......+ .+ +.++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 43 3356677777765543 468999998752111111 11 11111111
Q ss_pred HHHHcCCCCccccc-CC--CCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 570 EFILSLPCGYETLV-DD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 570 ~fI~~lP~G~dT~v-ge--~~LSGGQkQRIaIARALlk~p~--ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
+.++.+ |++... .. ..||||||||++|||||+.+|+ +||||||||+||+.+...+.+.+ +.+
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l-~~l 250 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL-KSM 250 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHH
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHH-HHH
Confidence 223332 332221 22 3799999999999999999988 99999999999999999999875 444
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.9e-28 Score=273.16 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=124.3
Q ss_pred EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-----------EECCEeCCCCCH
Q 006650 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDI 521 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-----------~idG~di~~i~~ 521 (637)
++++.+|..+ ...|.++.. .++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 3 ~~~~~~~~~~--~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN--GFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT--SCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC--ceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 4678899632 234444443 55999999999999999999999999999999999 678877654322
Q ss_pred HHH------hcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHH
Q 006650 522 RWL------REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (637)
Q Consensus 522 ~~l------R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQR 595 (637)
... +..+.++.|.+.++.+|+++++... . ..+++.++++..++.+.. |..+ ..||||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~---~~~~~~~~l~~l~l~~~~-------~~~~--~~LSgGe~Qr 146 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI-D---ERGKKDEVKELLNMTNLW-------NKDA--NILSGGGLQR 146 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH-C---CSSCHHHHHHHTTCGGGT-------TSBG--GGCCHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcc-h---hHHHHHHHHHHcCCchhh-------cCCh--hhCCHHHHHH
Confidence 222 2335566677778889999988643 1 234566777777664332 1111 3799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 596 IAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 596 IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
++|||||+++|++||||||||+||+++...+.+.| +.+
T Consensus 147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l-~~l 184 (538)
T 3ozx_A 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-REL 184 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999998865 444
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.6e-30 Score=281.11 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=118.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-e-EEECCEeCCCCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~-I~idG~di~~i~~~~lR~ 526 (637)
-|+++||+|+|+ |+||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 466777777763 78999999999999999999999999999999999999 9 99998 1 378
Q ss_pred ceEEEccCCcccc----ccHHHHHhcCCCC--C-CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 006650 527 KIGFVGQEPQLLQ----MDIKSNIMYGCPK--D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (637)
Q Consensus 527 ~I~~V~Qd~~LF~----gTI~eNI~~g~~~--~-~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIA 599 (637)
.+++|||++.+|. .|++||+ ++... . ..++++.++++..+ ++.......||||||||+|||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccchhhhhHHHHHHHHHH
Confidence 9999999997654 5899999 76321 1 11233333444443 333333348999999999999
Q ss_pred HH--HcCCCCE----EEEeC-CCCCCCHHHHHHHHHH
Q 006650 600 RA--ILRDPAI----LLLDE-ATSALDSESEHYVKAN 629 (637)
Q Consensus 600 RA--Llk~p~I----LILDE-aTSaLD~~tE~~I~~~ 629 (637)
|| |+++|++ ||||| |||+||+. ...+.+.
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l 283 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHI 283 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHH
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHH
Confidence 99 9999999 99999 99999999 5555554
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=4.4e-27 Score=271.35 Aligned_cols=158 Identities=28% Similarity=0.323 Sum_probs=106.7
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh---------------------cCCCCCCceEEECCEeCCCCCHHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---------------------RLYEPSDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~---------------------r~y~p~~G~I~idG~di~~i~~~~ 523 (637)
.++|+||||+|++||++||+||||||||||+++++ +-+.+.+|.|.++|.++.......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 36899999999999999999999999999998754 123334578999999886544221
Q ss_pred Hhc-----------------------------------------ceEEEccCCccc------------------------
Q 006650 524 LRE-----------------------------------------KIGFVGQEPQLL------------------------ 538 (637)
Q Consensus 524 lR~-----------------------------------------~I~~V~Qd~~LF------------------------ 538 (637)
.+. ..|++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 123444433332
Q ss_pred ---------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC-
Q 006650 539 ---------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP- 606 (637)
Q Consensus 539 ---------~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p- 606 (637)
+.|++||+.+. ......++..++++..++ ++ ...+. ..||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~l~~~~l---------~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFF-ASIPKIKRKLETLYDVGL---------GY-MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHT-TTCHHHHHHHHHHHHTTC---------TT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHhhCCHHHHHHHH-HHhhhHHHHHHHHHHcCC---------ch-hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 45888998877 221111222233332222 11 12233 389999999999999999886
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 607 --AILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 607 --~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
++||||||||+||+.+...|.+.+ +.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l-~~l 592 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVL-HRL 592 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHH-HHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHH-HHH
Confidence 599999999999999999999976 444
No 62
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=3.9e-28 Score=241.93 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=106.3
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhcceEEEccCCcccc-----
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ----- 539 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~-~~lR~~I~~V~Qd~~LF~----- 539 (637)
..|+||||+|++|+++||+||||||||||+++|+|++ | |+|.+ |.++..... ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 887754432 245788999999986664
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH-----HHHHcCCCCE
Q 006650 540 ------MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAI 608 (637)
Q Consensus 540 ------gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI-----ARALlk~p~I 608 (637)
+++.+| .+|. .++++.++++... ...+ +..||||||||++| ||+++++|++
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~------------~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK------------ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC------------EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC------------cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 445555 4442 2455666655422 2222 25799999999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 609 LLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~il~ 632 (637)
++|||||+++|.++|..|++.+.+
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~ 172 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQ 172 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999998643
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=2.1e-25 Score=242.63 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=120.7
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCCce
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--------------------------------------PSDGQ 508 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--------------------------------------p~~G~ 508 (637)
+++|+||++++| +++|||+||||||||++.|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999965553 55789
Q ss_pred EEECCEeCCCCCHHHHhcc-eEEEccCCccccccHHHHHhcCCCCCCCH-------------------------------
Q 006650 509 IYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVKN------------------------------- 556 (637)
Q Consensus 509 I~idG~di~~i~~~~lR~~-I~~V~Qd~~LF~gTI~eNI~~g~~~~~~d------------------------------- 556 (637)
+++||.+++..+...+++. +++++|+..++-.+-.++..+- +.....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~l-d~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLL-DRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999987777888777 8999999999988877666554 111110
Q ss_pred -------------HHHHHHHHH-------------cCHHHHHHcC--C----------------CCccc---ccCCC---
Q 006650 557 -------------EDIEWAAKQ-------------AYVHEFILSL--P----------------CGYET---LVDDD--- 586 (637)
Q Consensus 557 -------------e~v~~A~~~-------------a~l~~fI~~l--P----------------~G~dT---~vge~--- 586 (637)
+++.+.+.. ..+.+.+..+ | .|++. .++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000000000 0122223332 2 13332 12211
Q ss_pred ------C-CChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 ------L-LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ------~-LSGGQkQRIaIARALlk~p--~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
. ||||||||++|||+|+++| ++||||||||+||+++...|.+.|.+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~ 342 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR 342 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1 7999999999999999999 99999999999999999999998643
No 64
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.91 E-value=2.6e-27 Score=227.09 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=101.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCC---HHHHh-cceE----EEccCCccccccHHHHHh
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM 547 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~i~---~~~lR-~~I~----~V~Qd~~LF~gTI~eNI~ 547 (637)
+++||||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 77888 5788 899999998 221
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE-------EeCCCC---
Q 006650 548 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL-------LDEATS--- 616 (637)
Q Consensus 548 ~g~~~~~~de~v~~A~~~a~l~~fI~~-lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILI-------LDEaTS--- 616 (637)
+ ++++ .+++++++.+ +| ||||.|+|+ |||||||||+||||++++|++.- =|.+..
T Consensus 77 -~------~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -V------SEEE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -C------CHHH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -C------Chhh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 1 1222 7899999999 99 999999997 99999999999999999998731 233321
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 006650 617 ALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 617 aLD~~tE~~I~~~il~~l~ 635 (637)
.+|.+....+.+-+.+.+.
T Consensus 143 ~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp EECTTCHHHHHHHHHHHHT
T ss_pred ccCcccHHHHHHHHHHHHh
Confidence 1344445556665555543
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=3.3e-24 Score=251.47 Aligned_cols=158 Identities=27% Similarity=0.372 Sum_probs=112.0
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHH---------HHHhcCCCCC------Cc------eEEECCEeCCCCCH---
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLDI--- 521 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~---------~LL~r~y~p~------~G------~I~idG~di~~i~~--- 521 (637)
+.|+||||+|++|+++||+|+||||||||+ +++.+...+. +| .|.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4555444333 33 35666655533211
Q ss_pred -------HHHh-------------------------------cceEEEccCCcccc------------------------
Q 006650 522 -------RWLR-------------------------------EKIGFVGQEPQLLQ------------------------ 539 (637)
Q Consensus 522 -------~~lR-------------------------------~~I~~V~Qd~~LF~------------------------ 539 (637)
+.+| +..|++.|+.+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 34578888877653
Q ss_pred ---------ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC--
Q 006650 540 ---------MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP-- 606 (637)
Q Consensus 540 ---------gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p-- 606 (637)
.|+.||+.+. ......++..++++.+++ || ..+|. ..||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~-~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFF-KNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHT-TTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHH-hcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 4677777766 222223344455555554 33 23455 489999999999999999876
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 607 -AILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 607 -~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
++|||||||++||+++++.|++.| +.+.
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL-~~L~ 855 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVL-HRLV 855 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHH-HHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH-HHHH
Confidence 799999999999999999999975 5553
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=1.7e-26 Score=228.44 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=89.0
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 545 (637)
.+|+|| ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.||||+|++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589985 89999999999999999999999999 99999994 333321 2234688999999998 677
Q ss_pred H-hcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 006650 546 I-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (637)
Q Consensus 546 I-~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~ 624 (637)
+ .++.+ . .+.+........+++.++. |+ |||||++|||||+.+|++||||||||+ +..
T Consensus 79 l~~~~~~-~--~~~~~~~~~~~~~~~~l~~---gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRP-L--HDALRDMVEPEVIPKLMEA---GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHH-H--HHHHTTTSCTTHHHHHHHT---TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHH-H--HHHHHHhccHHHHHHHHHh---CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 7 44310 0 0000000001123333332 22 999999999999999999999999999 666
Q ss_pred HHHHHH
Q 006650 625 YVKANT 630 (637)
Q Consensus 625 ~I~~~i 630 (637)
.+.+.+
T Consensus 138 ~l~~~l 143 (208)
T 3b85_A 138 QMKMFL 143 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 67
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=3.3e-27 Score=247.57 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=114.9
Q ss_pred cccCCCcEEEEEEEEECCCCCCcCcccceeEE-----------------------eeCCCEEEEEcCCCCcHHHHHHHHh
Q 006650 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------IEANEVVAIVGLSGSGKSTFVNLLL 499 (637)
Q Consensus 443 ~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~-----------------------I~~Ge~vAIVG~SGsGKSTL~~LL~ 499 (637)
.+...+.|+++||++.|. |+++++++. +++|+++||+|+||||||||+++|+
T Consensus 37 l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 37 LRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp TCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred ccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 344566799999999993 577877775 8999999999999999999999999
Q ss_pred cCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHcC
Q 006650 500 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL 575 (637)
Q Consensus 500 r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~----~~~~~de~v~~A~~~a~l~~fI~~l 575 (637)
|+++|++|. +++++|+||+++|..|++||+.+.. +...+.+. +.+++..+
T Consensus 112 gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~---------~~~~L~~l 165 (312)
T 3aez_A 112 ALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRA---------LMRFVTSV 165 (312)
T ss_dssp HHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHH---------HHHHHHHH
T ss_pred hhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHH---------HHHHHHHh
Confidence 999998764 5799999999999999999997641 11112223 33444444
Q ss_pred CCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 006650 576 PCGYE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (637)
Q Consensus 576 P~G~d-T~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD 619 (637)
..|+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|
T Consensus 166 ~~~~~~~~~--~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 166 KSGSDYACA--PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp HTTCSCEEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred CCCcccCCc--ccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 44443 222 3799999999999999999999999999999975
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=6.3e-24 Score=247.26 Aligned_cols=171 Identities=22% Similarity=0.307 Sum_probs=115.2
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHH-HhcCC-------CC---------------
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY-------EP--------------- 504 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~L-L~r~y-------~p--------------- 504 (637)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.|+. .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999986 16999999999999999999999999999996 65443 22
Q ss_pred ---CCc-------eEEECCEeCCCCCH----------HHHhcceEEEcc-------------------------------
Q 006650 505 ---SDG-------QIYIDGFPLTDLDI----------RWLREKIGFVGQ------------------------------- 533 (637)
Q Consensus 505 ---~~G-------~I~idG~di~~i~~----------~~lR~~I~~V~Q------------------------------- 533 (637)
.+| .|.+||.++..-.. +.+|+.++.+++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999988864322 344443333221
Q ss_pred CCcccc-------------------------ccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHcCCCCcccccC
Q 006650 534 EPQLLQ-------------------------MDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584 (637)
Q Consensus 534 d~~LF~-------------------------gTI~eNI~~g~~~~----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vg 584 (637)
|-+++. .||.||+.+...+. ...++. ....+.+..+.-++. .++
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~gL~~~-~l~ 725 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREVGLGYL-RLG 725 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHTTCTTS-BTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHcCCCcc-ccc
Confidence 222222 35666654330000 000111 123345555532222 245
Q ss_pred C--CCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 585 D--DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 585 e--~~LSGGQkQRIaIARALlk~---p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
. ..||||||||++|||||+++ |++|||||||++||..+.+.+.+.+ +.+
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL-~~L 779 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQL-VKL 779 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHH-HHH
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHH
Confidence 4 38999999999999999996 7999999999999999999999975 444
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.4e-23 Score=221.28 Aligned_cols=161 Identities=24% Similarity=0.312 Sum_probs=115.0
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC------------------------------------------------
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL------------------------------------------------ 501 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~------------------------------------------------ 501 (637)
++++++.+| .++|+|+||||||||++.|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 568889999 9999999999999999999843
Q ss_pred --CCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccc-cccHHHHHhcCCCCC---C------------CHHHHHHHH
Q 006650 502 --YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD---V------------KNEDIEWAA 563 (637)
Q Consensus 502 --y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~---~------------~de~v~~A~ 563 (637)
+.+.+|++++||.+++.-+...+.+.+++.+|+..++ .|+|.+|+... +.+ . +.+++.+..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3455689999999987666777788899999998866 99999999875 321 0 111122221
Q ss_pred HHc------------CH-HHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCC
Q 006650 564 KQA------------YV-HEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARAIL----RDPAILLLDEATSAL 618 (637)
Q Consensus 564 ~~a------------~l-~~fI~~lP~G~dT~vge--------~~LSGGQkQRIaIARALl----k~p~ILILDEaTSaL 618 (637)
+.. .+ .+....++.|+++.+++ ..||||||||++|||||. ++|++||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 01113456688876532 279999999999999995 889999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006650 619 DSESEHYVKANTLD 632 (637)
Q Consensus 619 D~~tE~~I~~~il~ 632 (637)
|+++...+.+.+.+
T Consensus 255 D~~~~~~l~~~l~~ 268 (322)
T 1e69_A 255 DDYNAERFKRLLKE 268 (322)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987533
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.88 E-value=2.7e-26 Score=242.69 Aligned_cols=166 Identities=13% Similarity=0.169 Sum_probs=119.8
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-ccCCCcEE---------E
Q 006650 384 QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQ---------F 452 (637)
Q Consensus 384 ~it~G~l~a~~~~~~~l~~~~~~l~~-~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~-~~~~~~I~---------f 452 (637)
.+|.|++.+++.+...+..+ .+.. ....+.....+.+|+.++++.+.. ......... ....+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999988776554432 1111 111111222345677777764332 111001111 11124566 8
Q ss_pred EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEc
Q 006650 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~ 532 (637)
+||+| | .++++++|+++++|+.++|+|+||||||||+++|+|+++|++|.|.++|.+ ++....+|+.+++++
T Consensus 152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 88888 8 259999999999999999999999999999999999999999999999976 444444566777664
Q ss_pred cCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 006650 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612 (637)
Q Consensus 533 Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILD 612 (637)
| |||+||++|||||.++|+++|||
T Consensus 224 g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 G--------------------------------------------------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp B--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred C--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 1 89999999999999999999999
Q ss_pred CCCC
Q 006650 613 EATS 616 (637)
Q Consensus 613 EaTS 616 (637)
|||+
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9998
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=1.1e-25 Score=243.59 Aligned_cols=143 Identities=23% Similarity=0.229 Sum_probs=118.5
Q ss_pred CcccceeEEeeCCC--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh
Q 006650 466 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (637)
Q Consensus 466 ~vL~~isl~I~~Ge--------------------~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR 525 (637)
.+|+||||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.+.. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998763 2
Q ss_pred cceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHHc
Q 006650 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL 603 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGG--QkQRIaIARALl 603 (637)
.++++|++...+.|+.||+.++. + ++++.+.++..++.+ ++..+ .|||| ||||++|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~-~---~~~~~~~L~~~~L~~--------~~~~~---~lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS-T---NFPPDTYLEKMKFYE--------YDFFI---IISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG-S---SCCHHHHHHHTTGGG--------CSEEE---EEESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc-h---HHHHHHHHHHcCCCc--------cCCeE---EeCCCCccHHHHHHHHHHH
Confidence 28899998666889999998873 2 244666666666532 23322 29999 999999999999
Q ss_pred C----------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 604 R----------DPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 604 k----------~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
+ +|++++|||||++||+.++..+.+.+.+
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999887644
No 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=1.5e-23 Score=244.45 Aligned_cols=163 Identities=25% Similarity=0.354 Sum_probs=112.9
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-----cCCC---CCCc-------------
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----RLYE---PSDG------------- 507 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-----r~y~---p~~G------------- 507 (637)
.|+++|++. ..|+||||+|++|+++||+|+||||||||++.|+ +.+. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588898852 3699999999999999999999999999999854 2111 2233
Q ss_pred eEEECCEeCCCCC---HH-------HHh---------cceEEEccCCcc---------------------c---------
Q 006650 508 QIYIDGFPLTDLD---IR-------WLR---------EKIGFVGQEPQL---------------------L--------- 538 (637)
Q Consensus 508 ~I~idG~di~~i~---~~-------~lR---------~~I~~V~Qd~~L---------------------F--------- 538 (637)
.|.+||.++..-. +. ..| +.+||++|..-+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998874321 11 122 346888885321 1
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccc-ccCC--CCCCh
Q 006650 539 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSG 590 (637)
Q Consensus 539 -------------------------~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT-~vge--~~LSG 590 (637)
+.|+.||+.+.. .. .++.+ ..+.+..+ |++. ..+. ..|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 225556665541 11 11111 12344554 4444 3454 38999
Q ss_pred HHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 591 GQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 591 GQkQRIaIARALlk~p---~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
|||||++|||||+++| ++|||||||++||+.+.+.+.+.|.
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~ 892 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 892 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 9999999999999875 9999999999999999999999763
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=7.2e-23 Score=239.56 Aligned_cols=166 Identities=21% Similarity=0.326 Sum_probs=111.9
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-----cCCC---CCCce-----------
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----RLYE---PSDGQ----------- 508 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-----r~y~---p~~G~----------- 508 (637)
..++++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3599999862 2699999999999999999999999999999853 2222 23443
Q ss_pred --EEECCEeCCCC---CHH-------HHh---------cceEEEccCCcc---------------------c--------
Q 006650 509 --IYIDGFPLTDL---DIR-------WLR---------EKIGFVGQEPQL---------------------L-------- 538 (637)
Q Consensus 509 --I~idG~di~~i---~~~-------~lR---------~~I~~V~Qd~~L---------------------F-------- 538 (637)
|.+||.++..- ++. ..| +.+||++|..-+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 56677666321 111 122 346777775321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccc-ccCC--CCCC
Q 006650 539 --------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLS 589 (637)
Q Consensus 539 --------------------------~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT-~vge--~~LS 589 (637)
+.|+.||+.+.. .. .++.+ ..+.+..+ |+.. .++. ..||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~--~~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE--PI--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHST--TC--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhh--cc--hHHHH------HHHHHHHc--CCCcccccCccccCC
Confidence 124455555441 11 11111 12344444 4444 3455 3899
Q ss_pred hHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 590 GGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 590 GGQkQRIaIARALlk~p---~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
||||||++|||||+++| ++|||||||++||..+.+.+.+.| +.+
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL-~~L 912 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVI-NGL 912 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHH
Confidence 99999999999999875 999999999999999999999975 444
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=6.1e-24 Score=203.44 Aligned_cols=116 Identities=21% Similarity=0.301 Sum_probs=83.7
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCc--cccccHHHHHh
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LLQMDIKSNIM 547 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~--LF~gTI~eNI~ 547 (637)
||||++++||.++|+||||||||||++++.+ |... ++.+.+| ++++|++. .+.++..+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999998542 2222 2334444 66778752 1222222211
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 548 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 548 ~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
...+ ...+..|+.+.+.. ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 63 ------------~~~~--------~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 63 ------------HYIV--------SKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp ------------HHHH--------HHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred ------------HHHH--------HHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 1111 11223577777766 36799999999999999999999999999999999966
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=4.2e-23 Score=199.21 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v 559 (637)
+++|+||||||||||+++|+|++. |.++|.+.++......++++|+++|++ +..+|+ ++.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-~------ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-F------ 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET-T------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh-c------
Confidence 689999999999999999999995 778888765544335688999999987 333443 1100 0
Q ss_pred HHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 006650 560 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKANT 630 (637)
Q Consensus 560 ~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARA-----Llk~p~ILILDE--aTSaLD~~tE~~I~~~i 630 (637)
.+ .+..++. ..||||||||++|||| ++++|+++|||| ||++||+.+.+.+.+.+
T Consensus 64 ---------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 64 ---------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ---------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ---------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 00 0133454 3899999999999996 999999999999 99999999998888765
No 76
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.86 E-value=1e-25 Score=241.25 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=155.1
Q ss_pred HHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccc-cCCCc
Q 006650 372 AVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGH 449 (637)
Q Consensus 372 ~l~~g~~lv~~-g~it~G~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ld~~~~~~~~~~~~~~~-~~~~~ 449 (637)
+.+.|++.+.. |.+|.|++.+|+.+...+..+ .+......+..+..+.+|+++++ +|+........... ...+.
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34456666665 889999999998877655443 11111111122234556888777 33322111011110 11234
Q ss_pred E---------EEEEEEEE---CCCCCCcCcc---------cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 006650 450 V---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (637)
Q Consensus 450 I---------~f~nVsF~---Y~~~~~~~vL---------~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~ 508 (637)
+ +|+||+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|+|+|+|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 5 89999999 9642 23466 9999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEc-cCCcc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccC
Q 006650 509 IYIDGFPLTDLDIRWLREKIGFVG-QEPQL---LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584 (637)
Q Consensus 509 I~idG~di~~i~~~~lR~~I~~V~-Qd~~L---F~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vg 584 (637)
|.++|. .++....+|+.+++|+ |++.+ +..|+++||+++. ....|..+..+++.+.+++++..+|.|++|.++
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l-~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL-RMKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHT-TSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHH-hcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 999985 5666666889999999 99887 8999999999874 334445555556667889999999999999998
Q ss_pred C--CCCChHHHHHHHHHHH
Q 006650 585 D--DLLSGGQKQRIAIARA 601 (637)
Q Consensus 585 e--~~LSGGQkQRIaIARA 601 (637)
+ .+-+.+..+|++....
T Consensus 283 t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 283 SCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEECSSHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHh
Confidence 7 3557888999988763
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.84 E-value=1.2e-23 Score=216.17 Aligned_cols=126 Identities=20% Similarity=0.174 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc-cHHHHHhcCCCCC--CCH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKD--VKN 556 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~--~~d 556 (637)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.||.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 3457889999999998865 9999999984211 112
Q ss_pred HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 006650 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (637)
Q Consensus 557 e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~ 624 (637)
+.+.+.++ .++-+.++ ..||||||||++||||+.. +++|||||++||+....
T Consensus 81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~ 132 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE 132 (270)
T ss_dssp HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH
T ss_pred HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH
Confidence 33444333 23333221 2599999999999999875 99999999999998743
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.83 E-value=9.7e-24 Score=215.89 Aligned_cols=156 Identities=19% Similarity=0.299 Sum_probs=128.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHHhcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~i~~~~lR~~I 528 (637)
++++|++|. ++|+|+| +++|+.++|+|||||||||++++|+|+|+|+ +|+|.++|.|+..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 345566542 4899999 9999999999999999999999999999998 999999999886553 4567
Q ss_pred EEEcc-----CCccccccHHHHHhcCCCCCC-------CHHHHHHHHHHcC-----------------HHHHH-------
Q 006650 529 GFVGQ-----EPQLLQMDIKSNIMYGCPKDV-------KNEDIEWAAKQAY-----------------VHEFI------- 572 (637)
Q Consensus 529 ~~V~Q-----d~~LF~gTI~eNI~~g~~~~~-------~de~v~~A~~~a~-----------------l~~fI------- 572 (637)
++|+| ++..|..+|+.+++.. | ++ +.+.++.+++.+. ++..+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~-p-~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~ 150 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQ 150 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC-C-SEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGG
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC-C-CEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccc
Confidence 88899 7778899999999875 4 44 6777777666543 12222
Q ss_pred -----HcCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCE--EEEeCCCCCCCHHH
Q 006650 573 -----LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSES 622 (637)
Q Consensus 573 -----~~lP~G~dT~vge~--~LSGGQkQRIaIARALlk~p~I--LILDEaTSaLD~~t 622 (637)
..++++|++.|+++ ++||| ||+++||+++.||+| +|+||+||++|...
T Consensus 151 ~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~ 207 (261)
T 2eyu_A 151 QEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLM 207 (261)
T ss_dssp HHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHH
T ss_pred cchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHH
Confidence 13467899999985 88999 999999999999999 99999999999874
No 79
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.83 E-value=3.2e-23 Score=222.13 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=117.1
Q ss_pred cccceeEEeeC--CCEEEEEcCCCCcHHHHHHHHhcCCCCCC----ceEEE----CCEeCCCCCHHHHhcceEEEccCCc
Q 006650 467 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYI----DGFPLTDLDIRWLREKIGFVGQEPQ 536 (637)
Q Consensus 467 vL~~isl~I~~--Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~----G~I~i----dG~di~~i~~~~lR~~I~~V~Qd~~ 536 (637)
+.+.|+++|++ |+++||||+||||||||+++|+|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99997 46665 5566666 56999999999
Q ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCC--ccccc-CC---------CCCChHHHHHHHHHHHH--
Q 006650 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLV-DD---------DLLSGGQKQRIAIARAI-- 602 (637)
Q Consensus 537 LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G--~dT~v-ge---------~~LSGGQkQRIaIARAL-- 602 (637)
+|++|++|||.++. .+..+..+.......+...++..++.+ ++..+ +| .++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEEe-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 99999999999983 455566677776666777778777654 55533 43 26999999999999999
Q ss_pred -cC--CCCEEEEeCCC
Q 006650 603 -LR--DPAILLLDEAT 615 (637)
Q Consensus 603 -lk--~p~ILILDEaT 615 (637)
++ +++++++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 87 89999999997
No 80
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.82 E-value=7e-23 Score=213.77 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=103.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHH--hcceEEEccCCc-cc-c
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-Q 539 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF-~ 539 (637)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...| |..|+||+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999886643 1334 457999999987 55 5
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC--EEEEeCCC
Q 006650 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEAT 615 (637)
Q Consensus 540 gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~--ILILDEaT 615 (637)
.|++||+.++.....+ . ..++.+ |....... ..|| |||++||||+..+|+ +|+|| ||
T Consensus 170 ~~v~e~l~~~~~~~~d-~---~lldt~-----------gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD-V---VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHHHTTCS-E---EEECCC-----------CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHHHcCCc-c---hHHhcC-----------CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 6899999875211111 0 011111 22111111 1588 999999999999999 99999 99
Q ss_pred CCCCHHHHH
Q 006650 616 SALDSESEH 624 (637)
Q Consensus 616 SaLD~~tE~ 624 (637)
++||+.+..
T Consensus 231 sglD~~~~~ 239 (302)
T 3b9q_A 231 TGLNMLPQA 239 (302)
T ss_dssp GGGGGHHHH
T ss_pred CCcCHHHHH
Confidence 999998764
No 81
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.82 E-value=1.6e-23 Score=225.02 Aligned_cols=146 Identities=20% Similarity=0.307 Sum_probs=123.8
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHHhcceEEEcc-----CCcccc
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQ-----EPQLLQ 539 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~i~~~~lR~~I~~V~Q-----d~~LF~ 539 (637)
++|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677776 8999999999999999999999999999998 899988776664 3 46788999999 999999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHcCH-----------------HHHH------------HcCCCCccccc
Q 006650 540 MDIKSNIMYGCPKDV-------KNEDIEWAAKQAYV-----------------HEFI------------LSLPCGYETLV 583 (637)
Q Consensus 540 gTI~eNI~~g~~~~~-------~de~v~~A~~~a~l-----------------~~fI------------~~lP~G~dT~v 583 (637)
++|++|+++. | ++ +++.+..+++.++. +..+ ..+++++++.|
T Consensus 200 ~~l~~~L~~~-p-d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC-C-SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC-c-CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999986 4 55 77888888887753 1221 12467899999
Q ss_pred CCC--CCChHHHHHHHHHHHHcCCCCE--EEEeCCCCCCCHH
Q 006650 584 DDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSE 621 (637)
Q Consensus 584 ge~--~LSGGQkQRIaIARALlk~p~I--LILDEaTSaLD~~ 621 (637)
+++ ++||| ||++|||+++.+|+| +|+||+||+||..
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 984 78999 999999999999999 9999999999975
No 82
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=4.7e-22 Score=211.66 Aligned_cols=137 Identities=16% Similarity=0.190 Sum_probs=104.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHH--hcceEEEccCCc-cc-cc
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-QM 540 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF-~g 540 (637)
+++||++++|++++|||+|||||||+++.|+|++.|++|+|.++|.|+.... ...| |..|+||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999986542 1233 567999999987 44 66
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC--EEEEeCCCC
Q 006650 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATS 616 (637)
Q Consensus 541 TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~--ILILDEaTS 616 (637)
|++|||.++.....+ . ..++.+ |+...... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d-~---~lldt~-----------Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD-V---VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCS-E---EEEECC-----------CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCH-H---HHHHhc-----------CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 899999876211111 0 011111 11111001 1588 999999999999999 99999 999
Q ss_pred CCCHHHHH
Q 006650 617 ALDSESEH 624 (637)
Q Consensus 617 aLD~~tE~ 624 (637)
+||+.+..
T Consensus 289 glD~~~~~ 296 (359)
T 2og2_A 289 GLNMLPQA 296 (359)
T ss_dssp GGGGHHHH
T ss_pred CCCHHHHH
Confidence 99998764
No 83
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.80 E-value=3.4e-23 Score=203.05 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=111.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCCHHHHhcceEEEccCCcccccc
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 541 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gT 541 (637)
+++|++++||||||||||||+++|+|+|+ |..|+ +||.++..++.+.+|+.+ +|++++|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88998 699999999999999986 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH-HHcCCCCEEEEeCCCCCCCH
Q 006650 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDS 620 (637)
Q Consensus 542 I~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIAR-ALlk~p~ILILDEaTSaLD~ 620 (637)
+.+|+ ||. ++++++++++.+.+.-+ +-.|+|+++.... |+ .|| +++++|++++|||+|+++|+
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~---------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT---------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS---------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc---------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 99998 772 57889999986432211 2246677776432 22 677 89999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006650 621 ESEHYVKANTLD 632 (637)
Q Consensus 621 ~tE~~I~~~il~ 632 (637)
++|+.|++++.+
T Consensus 140 ~~e~~i~~~l~~ 151 (198)
T 1lvg_A 140 ETEESLAKRLAA 151 (198)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998643
No 84
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=6.7e-21 Score=208.38 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=118.8
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE---eCCCCC----
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLD---- 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~---di~~i~---- 520 (637)
..++++||++.|+.+ ..+|+++ |+|++||+++|+|+||||||||+++|+|+++|++|.|.++|+ +++++.
T Consensus 130 ~~l~~~~v~~~~~tg--~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCCC--ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 468999999999732 3699999 999999999999999999999999999999999999999998 554432
Q ss_pred -HHHHhcceEEEccC--CccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcc--cccCC-CCCChHHHH
Q 006650 521 -IRWLREKIGFVGQE--PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE--TLVDD-DLLSGGQKQ 594 (637)
Q Consensus 521 -~~~lR~~I~~V~Qd--~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~d--T~vge-~~LSGGQkQ 594 (637)
...+++.|+||+|+ +...+-|+.+|+.+. .+... . .|.+ -.+.. .+||||| |
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-------ae~~~------------~--~~~~v~~~ld~l~~lS~g~-q 264 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI-------AEDFR------------D--RGQHVLLIMDSLTRYAMAQ-R 264 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-------HHHHH------------T--TTCEEEEEEECHHHHHHHH-H
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH-------HHHHH------------h--CCCCHHHHHHhHHHHHHHH-H
Confidence 35688999999995 345567888888764 11111 0 1111 11222 3799999 9
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
|++|| +++||+ |++||+.+...+.+.+
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll 291 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALV 291 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHH
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHH
Confidence 99999 999998 9999999999999864
No 85
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=1e-20 Score=185.35 Aligned_cols=166 Identities=20% Similarity=0.185 Sum_probs=103.8
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEE-------CCEeCC
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYI-------DGFPLT 517 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y-----~p~~G~I~i-------dG~di~ 517 (637)
|+++||+|+|+ .++++| |++++|++++|+|++|||||||++.|+|.. .|+.|.+.. ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258888 889999999999999999999999999998 899998765 233222
Q ss_pred C---C--------CHHHHhcceEEEccCCccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccc-cC
Q 006650 518 D---L--------DIRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VD 584 (637)
Q Consensus 518 ~---i--------~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~-vg 584 (637)
| + ..+.+++.++++.|+...+++ ++..|+..+ . ...++++.+.++ . .+.... ++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~-~~~~~~~~~~~~---------~--~~~~~~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP-L-KDLDQQMIEWAV---------D--SNIAVLVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-C-CHHHHHHHHHHH---------H--TTCCEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC-C-chhHHHHHHHHH---------H--cCCCeEEEE
Confidence 1 1 113456666666665444333 333344332 1 111223333222 1 123332 24
Q ss_pred C--CCCChHHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 585 D--DLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 585 e--~~LSGGQkQR-IaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
. ..+|+||||| +..||+++++|+++++||||||+|.++...+.+.+.+.+
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 3 3799999999 899999999999999999999999999999998876544
No 86
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.76 E-value=3.4e-21 Score=199.87 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=96.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCC--
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-- 553 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~-- 553 (637)
+++.+|||+|+||||||||+++|.+++.+. | .. ++.+.+|+||+++|++++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g--------------~~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y--------------GG-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H--------------GG-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C--------------CC-CceEEEeccccccCChHHHHHHhccccccch
Confidence 468899999999999999999999999874 2 01 56677779999999999999998763100
Q ss_pred CCHHHHHHHHHHcCHHHHHHcCCCCcccccC------C--CCCChHHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHH
Q 006650 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVD------D--DLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSES 622 (637)
Q Consensus 554 ~~de~v~~A~~~a~l~~fI~~lP~G~dT~vg------e--~~LSGGQkQRIaIA--RALlk~p~ILILDEaTSaLD~~t 622 (637)
.+.....++.+...+.+++.++++|++|..+ . ..+||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000111223345678899999999988543 2 48999999999998 666 999999999999999864
No 87
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.75 E-value=4.2e-18 Score=182.38 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=43.5
Q ss_pred CCChHHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 587 LLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 587 ~LSGGQkQRIaIARALl------k~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
.||||||||++|||||. ++|++|||||||++||+++...+.+.+ +.+
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l-~~l 331 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVL-KEL 331 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHH-HGG
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHH-HHH
Confidence 79999999999999999 899999999999999999999999865 444
No 88
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.75 E-value=4.7e-21 Score=188.65 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=100.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc---cHHHHHhc--C
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM---DIKSNIMY--G 549 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g---TI~eNI~~--g 549 (637)
.++|+++||+|+||||||||+++|.|++.| +++||+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999975 69999999999854 56666544 3
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC-------CCHHH
Q 006650 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA-------LDSES 622 (637)
Q Consensus 550 ~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSa-------LD~~t 622 (637)
.+...+.+++.++++..++.+++.. | +++...|+.. +|+||+++||+++.+|+++++||||++ ||+.+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~---~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~ 135 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRS---PRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADA 135 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEEC---SSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCH
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCC---CCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCH
Confidence 2223456778888877766555443 3 4443333321 156899999999999999999999999 99999
Q ss_pred HHHHHHHHHHH
Q 006650 623 EHYVKANTLDS 633 (637)
Q Consensus 623 E~~I~~~il~~ 633 (637)
+..+++.+.+.
T Consensus 136 ~~~~~r~l~r~ 146 (211)
T 3asz_A 136 DERFIRRLKRD 146 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.74 E-value=4.1e-20 Score=186.93 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=88.7
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
..+|+|+||++++|+++||+||||||||||+++|++++ |.+.+| ..++.+++++||++...-|..+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 46999999999999999999999999999999999977 666665 3688999999997554569999
Q ss_pred HHhcCCC-CC------CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 006650 545 NIMYGCP-KD------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617 (637)
Q Consensus 545 NI~~g~~-~~------~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSa 617 (637)
|+.+... .. .+.+++.+.++. +.++.+..+ ..+|+||+||+++ |++..+|+++||||+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~--~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~ 145 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV--PTYDFVTHSRLPE-TTVVYPADVVLFEGILVF 145 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE--CCEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec--ccccccccCccCc-eEEecCCCEEEEeCcccc
Confidence 9875311 11 122223333222 222333222 4799999999998 799999999999999888
Q ss_pred CCHH
Q 006650 618 LDSE 621 (637)
Q Consensus 618 LD~~ 621 (637)
.|.+
T Consensus 146 ~~~~ 149 (245)
T 2jeo_A 146 YSQE 149 (245)
T ss_dssp TSHH
T ss_pred ccHH
Confidence 7653
No 90
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=4.3e-19 Score=172.71 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=96.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHH
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de 557 (637)
|++++|+|+||||||||+++|+|+++ ++| |.+||.+..++. .+++++|+++|+. +++ ++|+.-- ....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~---~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV---GLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC---CCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc---cccCC
Confidence 79999999999999999999999999 999 999999987654 5799999999996 443 3443211 00000
Q ss_pred HHHHHHHHcCHHHHHHcCCCCcccccCCC--CCChHHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 006650 558 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKAN 629 (637)
Q Consensus 558 ~v~~A~~~a~l~~fI~~lP~G~dT~vge~--~LSGGQkQRI-aIAR---ALlk~p~ILILDE--aTSaLD~~tE~~I~~~ 629 (637)
+...+..+|+. .+|||||+++ +++| |+.++|++||||| ||..+|.+.-+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 11123467763 7999999999 6666 7899999999999 8988999887777665
Q ss_pred H
Q 006650 630 T 630 (637)
Q Consensus 630 i 630 (637)
+
T Consensus 132 l 132 (189)
T 2i3b_A 132 L 132 (189)
T ss_dssp H
T ss_pred H
Confidence 4
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.67 E-value=3.5e-19 Score=175.37 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=85.4
Q ss_pred cCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc-cHH
Q 006650 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIK 543 (637)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~ 543 (637)
.++|+| .+|++||++||+||||||||||+++|+|+++ +|.+++.....-.....|+.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 479998 7999999999999999999999999999996 355554221110112346789999999988753 445
Q ss_pred HHHhc-----C--CCCCCCHHHHHHHH----------HHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 544 SNIMY-----G--CPKDVKNEDIEWAA----------KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 544 eNI~~-----g--~~~~~~de~v~~A~----------~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
+|+.. + .....+.+++.+.+ +..++.++....|. .|| ||+.+|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~lS-----------~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE---------AVT-----------VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT---------SEE-----------EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC---------cEE-----------EEEECC
Confidence 55421 1 00011233444333 33345444444442 234 899999
Q ss_pred CEEEEeCCCCCC----CHHHHHHHHHHH
Q 006650 607 AILLLDEATSAL----DSESEHYVKANT 630 (637)
Q Consensus 607 ~ILILDEaTSaL----D~~tE~~I~~~i 630 (637)
++++|||||+++ |+.+.+.+.+.+
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l 170 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTAR 170 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999998 666777777764
No 92
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.4e-18 Score=186.77 Aligned_cols=144 Identities=21% Similarity=0.157 Sum_probs=89.2
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcc
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~ 527 (637)
+.|+++||+++|++ ..+++|+||+| +|||+||||||||++.|+|...|..| .+|.++.. .....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~-~~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRI-KKTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCC-ccceeeee
Confidence 46999999999964 36999999998 99999999999999999999986665 24433322 11122467
Q ss_pred eEEEccCCccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 006650 528 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 528 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p 606 (637)
+++++|++.++ .-||.||+.++.. .+.++.++. +.+++.+ .++++.+||++||||++++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCC
Confidence 99999998877 7899999998832 222222221 2234432 34567788999999999999
Q ss_pred C---EEEEeCCC-CCCCHHHH
Q 006650 607 A---ILLLDEAT-SALDSESE 623 (637)
Q Consensus 607 ~---ILILDEaT-SaLD~~tE 623 (637)
+ +|++|||| ++||+...
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH
T ss_pred CeeEEEEEecCcccCCCHHHH
Confidence 9 99999999 69998774
No 93
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.66 E-value=2.1e-18 Score=179.99 Aligned_cols=141 Identities=17% Similarity=0.126 Sum_probs=68.2
Q ss_pred EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC-CCCCCceEEECCEeCCCCCHHHHhcceEEE
Q 006650 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~-y~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (637)
+||+++|.+ ..+++|++|+| +|||+||+|||||++.|.|. ..|++| |.++|.++.. +. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 588999964 36999999998 99999999999999999998 889999 9999987754 22 1 4678999
Q ss_pred ccCCccc-cccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 006650 532 GQEPQLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (637)
Q Consensus 532 ~Qd~~LF-~gTI~eNI~~g~~~~~~d-e~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~IL 609 (637)
+|+..++ .-||.||..+|.. ... ++.....+. +.+..+ ..+ +.+|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~--~~~~e~~~~l~~~--l~~~~~-------~~~--~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA--INCRDCFKTIISY--IDEQFE-------RYL--HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-------------CTTHHHH--HHHHHH-------HHH--HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhh--cCcHHHHHHHHHH--HHHHHH-------HHH--HHhCHHhhhhhhhhhhhh----ee
Confidence 9986654 6689999887622 111 111111111 111110 000 258999999999999985 99
Q ss_pred EEeCCCCC-CCHHHH
Q 006650 610 LLDEATSA-LDSESE 623 (637)
Q Consensus 610 ILDEaTSa-LD~~tE 623 (637)
++||||++ ||+...
T Consensus 132 ~ldePt~~~Ld~~~~ 146 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV 146 (301)
T ss_dssp EEECSSSSSCCHHHH
T ss_pred eeecCcccCCCHHHH
Confidence 99999985 999874
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.65 E-value=3.4e-17 Score=173.90 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=115.8
Q ss_pred CcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC-------C
Q 006650 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------D 520 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i-------~ 520 (637)
.-++.+||++.|+.+ ..+|+++ |+|++||++||+|+||||||||+++|+|+.+|+.|.|.++|.+.+++ .
T Consensus 44 ~~i~~~~l~~~~~tg--~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECCS--CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCCC--CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 358899999999732 3699999 99999999999999999999999999999999999999999763221 2
Q ss_pred HHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccccc--CC-CCCChHHHHHHH
Q 006650 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DD-DLLSGGQKQRIA 597 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~v--ge-~~LSGGQkQRIa 597 (637)
...+++.+.+++|.. ....+++..+.....+.++... .|.+..+ .. .+||+|| ||++
T Consensus 121 ~~~~~~~v~~~~~~~-----------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 121 QSTLSKCVLVVTTSD-----------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHHTTEEEEEECTT-----------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhhceEEEEECCC-----------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 233455566666532 1123556666666666666554 4555432 22 3899999 9999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 598 IARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 598 IARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
+| +.+|++ |++||+.....+.+. ++++
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~l-ler~ 207 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKL-LERA 207 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHH-HTTC
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHH-HHHH
Confidence 99 689987 999999999888875 3443
No 95
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.65 E-value=3.7e-16 Score=166.41 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRIaIARALl---------k~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.||||||||++|||+|. ++||||+||||||+||+.....+.+.+.+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence 59999999999999999 99999999999999999999999987643
No 96
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.64 E-value=4e-17 Score=170.29 Aligned_cols=130 Identities=19% Similarity=0.159 Sum_probs=91.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHH--hcceEEEccCCcccc-ccHHHHHhc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQLLQ-MDIKSNIMY 548 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~LF~-gTI~eNI~~ 548 (637)
++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...| |..|++|+|++.++. .|+.||+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999986654 2233 467999999998775 468888865
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHH
Q 006650 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSES 622 (637)
Q Consensus 549 g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~--ILILDEaTSaLD~~t 622 (637)
+.. .+.+..+-..+...+. .++.++..+|||.+||||+..+|+ +|.|| |+++.|...
T Consensus 180 ~~~--------------~~~d~~llDt~G~~~~--~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~ 238 (304)
T 1rj9_A 180 MKA--------------RGYDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE 238 (304)
T ss_dssp HHH--------------HTCSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH
T ss_pred HHh--------------CCCCEEEecCCCCCCc--hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH
Confidence 410 0111001111111110 012457788999999999999999 67777 565555433
No 97
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=2.4e-16 Score=187.99 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=99.4
Q ss_pred CcEEEEE-----EEEECCCCCCcCcccceeEEeeC-------CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 006650 448 GHVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (637)
Q Consensus 448 ~~I~f~n-----VsF~Y~~~~~~~vL~~isl~I~~-------Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 515 (637)
+.|+++| |++.|+++ ..|++|+||++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 99999533 4799999999988 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcceE-EEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHH
Q 006650 516 LTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (637)
Q Consensus 516 i~~i~~~~lR~~I~-~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQ 594 (637)
+.++| ||||++ ..-|+.|||... .++.|.+.. |...+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~--~~l~v~d~I~~r----------------ig~~d~~~~---------~~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEV--CRLTPIDRVFTR----------------LGASDRIMS---------GESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSE--EEECCCSBEEEE----------------CC------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCc--CCCCHHHHHHHH----------------cCCHHHHhh---------chhhhHHHHHH
Confidence 34666 999998 466777777321 122222211 22456777665
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
+++||++..+|+++||||||+++|+.....+..++++.+.+
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999865555556676653
No 98
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=6.4e-17 Score=175.04 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=109.6
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~--vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.+++++ +++|++ .+ |+|+||++++|++ +||||+||||||||+++|+|+. ++|.++...+....++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 888864 25 9999999999999 9999999999999999999994 5666665555555677
Q ss_pred ceEEEccCCccc-cccHHHHHhcCCCCCCCHHHHH----HHHHHcCHHHHHHcC-------CCCccccc-------CC--
Q 006650 527 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIE----WAAKQAYVHEFILSL-------PCGYETLV-------DD-- 585 (637)
Q Consensus 527 ~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~de~v~----~A~~~a~l~~fI~~l-------P~G~dT~v-------ge-- 585 (637)
.+++++|++.++ +-|+.||+.+|. ..+.+.-+ +.++. .+.+++.+. +..-|+.| -+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999987 679999999983 34433211 11221 233444432 22334432 12
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
..|+-.+ +.|+|+|-.+++++++||+|..|.++.-....+.+.+.|
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L 205 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSEL 205 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHH
Confidence 2577666 899999999999999999999998876666666665544
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.62 E-value=4.5e-17 Score=173.28 Aligned_cols=123 Identities=25% Similarity=0.279 Sum_probs=100.0
Q ss_pred EEEEEECCCCCCcCcccce-eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCC----ce-EEECCEeCCCCCHHHH
Q 006650 453 VNISFHYPSRPTVPILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRWL 524 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~i-sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~----G~-I~idG~di~~i~~~~l 524 (637)
+.+++.++ .|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |+||+.+.. .
T Consensus 111 ~~isTG~~------~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~ 178 (349)
T 1pzn_A 111 GRISTGSK------SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------R 178 (349)
T ss_dssp CEECCSCH------HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------C
T ss_pred CeecCCCH------HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------C
Confidence 45665543 45555 5899999999999999999999999999999 6766 67 999997651 2
Q ss_pred hcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc-
Q 006650 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL- 603 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl- 603 (637)
++++++++|+..++..++.|||.+.+. .+ |++|+|++.+||+++
T Consensus 179 ~~~i~~i~q~~~~~~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~ 223 (349)
T 1pzn_A 179 PERIREIAQNRGLDPDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIK 223 (349)
T ss_dssp HHHHHHHHHTTTCCHHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHH
Confidence 567899999999999999999988732 11 356777777777777
Q ss_pred ------CCCCEEEEeCCCCCCCHHH
Q 006650 604 ------RDPAILLLDEATSALDSES 622 (637)
Q Consensus 604 ------k~p~ILILDEaTSaLD~~t 622 (637)
.+|++||+||||+.+|++.
T Consensus 224 ~lS~G~~~~~llIlDs~ta~ld~~~ 248 (349)
T 1pzn_A 224 ELLNTDRPVKLLIVDSLTSHFRSEY 248 (349)
T ss_dssp HSSSSSSCEEEEEEETSSTTHHHHC
T ss_pred HhccccCCCCEEEEeCchHhhhhhh
Confidence 6899999999999999873
No 100
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.61 E-value=5.9e-19 Score=173.89 Aligned_cols=132 Identities=17% Similarity=0.072 Sum_probs=100.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~ 554 (637)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5799999999999999999999999999986 5 46899999999999998888742201111
Q ss_pred CHHHHHHHHHHcCHHHHHHcCCCC--cccccCCC--CCChHHHHHHHHH-HHHcCCCCEEEEeCCC-----------CCC
Q 006650 555 KNEDIEWAAKQAYVHEFILSLPCG--YETLVDDD--LLSGGQKQRIAIA-RAILRDPAILLLDEAT-----------SAL 618 (637)
Q Consensus 555 ~de~v~~A~~~a~l~~fI~~lP~G--~dT~vge~--~LSGGQkQRIaIA-RALlk~p~ILILDEaT-----------SaL 618 (637)
..+.+...+.+++..++.| +++.+.+. .+||||+||+++| |+++.+++++++|||. .-+
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 1112223344555666555 66666663 7899999999999 9999999999999985 447
Q ss_pred CHHHHHHHHHHH
Q 006650 619 DSESEHYVKANT 630 (637)
Q Consensus 619 D~~tE~~I~~~i 630 (637)
|...|..++..+
T Consensus 155 d~~~~~~~~R~~ 166 (208)
T 3c8u_A 155 EVPMADLEARLV 166 (208)
T ss_dssp CCCHHHHHHHHH
T ss_pred eCCHHHHHHHHH
Confidence 888887776654
No 101
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.61 E-value=1.1e-16 Score=166.04 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=93.6
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
++|+++++.+++|+.++|+|+||||||||++.|++...|++| .|.+.+.+ .+.+.+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999988 77654433 3566777776666655432 3345
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHH-HHHHHHHHHHcCCCCEEEEeCCCCCC
Q 006650 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ-KQRIAIARAILRDPAILLLDEATSAL 618 (637)
Q Consensus 545 NI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQ-kQRIaIARALlk~p~ILILDEaTSaL 618 (637)
|+..+ ..++++..++++. .+...+-+ +.+ ..+|.+| +||+. |+|+..+|+++|+||||+.+
T Consensus 97 ~l~~~---~~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHH---HHHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccC---CCCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 66544 1233444433322 22222211 222 3689999 77777 99999999999999999944
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.60 E-value=7e-16 Score=178.81 Aligned_cols=129 Identities=20% Similarity=0.183 Sum_probs=98.6
Q ss_pred CCcEEEEEEEEECCCC--CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECCEeCCCCCHHH
Q 006650 447 MGHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~idG~di~~i~~~~ 523 (637)
.+.|++++. ++|-- .+..+++|+||+ |++++|+|||||||||++|+++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457999998 45531 124799999999 99999999999999999999999974 7888753 1 1
Q ss_pred HhcceEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 524 lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
.+..+++|+| +|. -++.||+.. ++|+|++|++.+||++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHH
Confidence 2567899887 554 366666533 2589999999999999
Q ss_pred --cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHH
Q 006650 603 --LRDPAILLLDEA---TSALDSESE-HYVKANTLD 632 (637)
Q Consensus 603 --lk~p~ILILDEa---TSaLD~~tE-~~I~~~il~ 632 (637)
+.+|+++||||| ||+||..+. ..|.+.+.+
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~ 686 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE 686 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999 999999886 467666543
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.60 E-value=1.1e-17 Score=190.43 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=91.9
Q ss_pred cEEEEEEEEECCCCCCcCcccce----------eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCC
Q 006650 449 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT 517 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~i----------sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~ 517 (637)
.++++||++.|++. ..++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58999999999642 12455544 477776 999999999999999999999989 8999999999963
Q ss_pred CC---CHHHHhcceEEEccCCccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHH
Q 006650 518 DL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (637)
Q Consensus 518 ~i---~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQk 593 (637)
.. ....+|+.|+|++|++.++ ..|++|||.++ . +. +.... ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-~------------~~------~~~~~---------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-Q------------NA------IAGEG---------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-H------------HH------HHCSS---------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHH-H------------HH------hcCCc---------cccc---h
Confidence 21 2357899999999999876 45788888653 0 00 11100 1122 2
Q ss_pred HHHHHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHH
Q 006650 594 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKANTLD 632 (637)
Q Consensus 594 QRIaIARALlk~p~ILILDEa------TSaLD~~tE~~I~~~il~ 632 (637)
+++.++++...+|+++++||| |++||+.+++.+.+.+.+
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 444555555678999999999 999999999999887544
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.57 E-value=1.7e-17 Score=185.98 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=95.0
Q ss_pred cCcccceeE-EeeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcccccc
Q 006650 465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 541 (637)
Q Consensus 465 ~~vL~~isl-~I~~Ge~vAIVG~SGsGKSTL~~L--L~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gT 541 (637)
.++|+|+|+ .|++|++++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++.+|+++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 469999999 999999999999999999999999 6899999999999999873 223445677899999997631
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC----
Q 006650 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA---- 617 (637)
Q Consensus 542 I~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSa---- 617 (637)
+|+.+-...+ +++..++++..++.++..+.| ..|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~--~~~~~~~l~~~~l~~~~~~~~---------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASP--DPEGQEVVGGFDLSALIERIN---------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCC--CSSCCSCCSSHHHHHHHHHHH---------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred --CcEEEEecCc--ccchhhhhcccCHHHHHHHHH---------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 2232211111 011111222223333322211 135555 4779999999985
Q ss_pred -CCHHHHHHHHHHHHHHh
Q 006650 618 -LDSESEHYVKANTLDSL 634 (637)
Q Consensus 618 -LD~~tE~~I~~~il~~l 634 (637)
||+...+.+.+.+ +.+
T Consensus 155 ~lD~~~~~~l~~ll-~~l 171 (525)
T 1tf7_A 155 DASSVVRRELFRLV-ARL 171 (525)
T ss_dssp CCHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHH-HHH
Confidence 5888888887754 444
No 105
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.57 E-value=1.7e-15 Score=176.49 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=43.9
Q ss_pred CCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 586 ~~LSGGQkQRIaIARALlk~p--~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
..|||||||||+|||||.++| .+|||||||++||++..+.+.+.+ +.|.
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l-~~L~ 428 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSAL-ENLK 428 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHH
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHH-HHHH
Confidence 389999999999999999999 599999999999999999988864 5553
No 106
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=4.5e-18 Score=180.20 Aligned_cols=177 Identities=13% Similarity=0.105 Sum_probs=119.4
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHHh
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR 525 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~----~~~lR 525 (637)
|+++|++++|.+ ..+|+++||++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|..... ....|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 667777888853 35899999999999999999999999999999999999999999999999885432 12457
Q ss_pred cceEEEccCCccccc-------------cHHHHHhc---CCC-------CC--CCHHHHHHHHHHc-------------C
Q 006650 526 EKIGFVGQEPQLLQM-------------DIKSNIMY---GCP-------KD--VKNEDIEWAAKQA-------------Y 567 (637)
Q Consensus 526 ~~I~~V~Qd~~LF~g-------------TI~eNI~~---g~~-------~~--~~de~v~~A~~~a-------------~ 567 (637)
+++++|+|++.+|.. +++|.+.. +.. +. -++..+.+.++.+ .
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 889999999999963 23333210 000 00 0111111110000 0
Q ss_pred HHHHHHcCCCCcc-cccC--C-CCCChHHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006650 568 VHEFILSLPCGYE-TLVD--D-DLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKANTLDS 633 (637)
Q Consensus 568 l~~fI~~lP~G~d-T~vg--e-~~LSGGQkQRIaIARALlk------~p~ILILDEaTSaLD~~tE~~I~~~il~~ 633 (637)
+.+.+.+.|+-+- +.++ + ..+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+.
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0000111121000 1111 1 2578999999999999998 688887 9999999988888887553
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=5.1e-16 Score=174.04 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=95.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
++.+++++.|++- ..+|. ..+++|++++|+|+||||||||++.+++...|+ |+ +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 4566777766421 12444 389999999999999999999999999999885 53 1256
Q ss_pred EEccCCccccccHHHHHh-cCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 006650 530 FVGQEPQLLQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 530 ~V~Qd~~LF~gTI~eNI~-~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p 606 (637)
+++|++. .++++|.. +| .+.++ +.. .|+...... ..|||||+||+++||++..+|
T Consensus 315 ~~~ee~~---~~l~~~~~~~g----~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p 372 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSWG----MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKP 372 (525)
T ss_dssp EESSSCH---HHHHHHHHTTS----CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCH---HHHHHHHHHcC----CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCC
Confidence 6777762 36666653 33 22222 111 122222222 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHH-----HHHHHHHH
Q 006650 607 AILLLDEATSALDSE-----SEHYVKAN 629 (637)
Q Consensus 607 ~ILILDEaTSaLD~~-----tE~~I~~~ 629 (637)
++||+| ||++||.. ..+.+.+.
T Consensus 373 ~llilD-p~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 373 ARIAID-SLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp SEEEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred CEEEEc-ChHHHHhhCChHHHHHHHHHH
Confidence 999999 99999998 66666654
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.54 E-value=1.2e-15 Score=151.23 Aligned_cols=107 Identities=23% Similarity=0.280 Sum_probs=79.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-------CCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHH
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-------~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 546 (637)
.|++|++++|+||||||||||+++|+|.+.| ..|.|++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 455888888652 11 2457788898888888999999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH-------cCCCCEEEEeCCCCCCC
Q 006650 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-------LRDPAILLLDEATSALD 619 (637)
Q Consensus 547 ~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL-------lk~p~ILILDEaTSaLD 619 (637)
.+... .+..+ |++++..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~--~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARA--FNSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEEC--CSHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEec--CChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 88732 22221 22222333333 34899999999999999
Q ss_pred HH
Q 006650 620 SE 621 (637)
Q Consensus 620 ~~ 621 (637)
++
T Consensus 140 ~~ 141 (231)
T 4a74_A 140 SE 141 (231)
T ss_dssp HH
T ss_pred cc
Confidence 84
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.53 E-value=2.9e-16 Score=151.53 Aligned_cols=133 Identities=17% Similarity=0.037 Sum_probs=88.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 553 (637)
.+++|+.++|+|+|||||||++++|++. |+.|.|.+||.++.+.. .-++.++|++|++. .+.|+.+|+.+. .
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~-~-- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADV-A-- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHH-H--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHH-H--
Confidence 5889999999999999999999999998 77899999997764322 11345788998776 567889998653 1
Q ss_pred CCHHHHHHHHHHcCHHHHHHcCC--CCcccc--cCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 006650 554 VKNEDIEWAAKQAYVHEFILSLP--CGYETL--VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627 (637)
Q Consensus 554 ~~de~v~~A~~~a~l~~fI~~lP--~G~dT~--vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~ 627 (637)
. .. .+ .+-...++... .+++.. .+. ..+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 77 ---~-~~--~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 77 ---G-RY--AK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp ---H-HH--HH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred ---H-HH--hc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0 00 00 00000000000 011100 011 269999999999999999999876 5777665555
Q ss_pred HH
Q 006650 628 AN 629 (637)
Q Consensus 628 ~~ 629 (637)
+.
T Consensus 142 ~~ 143 (191)
T 1zp6_A 142 SQ 143 (191)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 110
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.51 E-value=1.7e-14 Score=161.36 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=42.8
Q ss_pred CC-ChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~L-SGGQkQRIaIARALlk~p--~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.| |||||||++|||||+.+| ++|||||||++||..+...|.+.+.+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~ 444 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR 444 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 56 999999999999999999 99999999999999999999987643
No 111
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.50 E-value=1.4e-13 Score=162.27 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=92.4
Q ss_pred CcEEEEEEEEECCCC--CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHH--------hcCCCCCCceEEECCEeCC
Q 006650 448 GHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQIYIDGFPLT 517 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL--------~r~y~p~~G~I~idG~di~ 517 (637)
+.|++++...-+-.. .+..|++|+||++++|++++|+|||||||||+++.+ .|.|-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 468898877655321 124699999999999999999999999999999999 66665554322
Q ss_pred CCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 006650 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (637)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIa 597 (637)
++++. .+|. ++| +.+.+ ..++|+|++++..
T Consensus 702 ----------~~~~d---~i~~-------~ig------------------~~d~l------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG------------------AGDSQ------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC------------------chhhH------------HHhHhhhHHHHHH
Confidence 11100 0000 011 11111 1368999999999
Q ss_pred HHHHH--cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 598 IARAI--LRDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 598 IARAL--lk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
+|+++ ..+|+++||||||+++|+.....+..++++.+.+
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~ 772 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT 772 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99998 9999999999999999999998887777777653
No 112
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.50 E-value=5.9e-14 Score=148.66 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=42.1
Q ss_pred CCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQ------RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.||||||| |+++|||+..+|++|||||||++||+++...+.+.+.+
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~ 299 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 69999999 78899999999999999999999999999999887543
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.50 E-value=9.1e-15 Score=155.64 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=87.7
Q ss_pred EEEEEECCCCCCcCcccceeE-------EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHH
Q 006650 453 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl-------~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~i~~~~l 524 (637)
.+++|+|.+. ..+.|+++.+ ..++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 6889998654 3567888887 78899999999999999999999999999997 67776554443 332 2
Q ss_pred hcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 006650 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk 604 (637)
+...++++|...-. ...+-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~~~-------------~~~~~~~--------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHR-------------DTLGFSE--------------------------------------ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEBTT-------------TBSCHHH--------------------------------------HHHHHTTS
T ss_pred hccccceeeeeecc-------------ccCCHHH--------------------------------------HHHHHhhh
Confidence 34556677654211 1111111 99999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH
Q 006650 605 DPAILLLDEATSALDSESEHYVKAN 629 (637)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~ 629 (637)
+|+++++|||| |.++...+.++
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~ 217 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTA 217 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHH
T ss_pred CcCEEecCCCC---CHHHHHHHHHH
Confidence 99999999999 88887665554
No 114
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.48 E-value=1.8e-14 Score=157.52 Aligned_cols=45 Identities=31% Similarity=0.400 Sum_probs=42.0
Q ss_pred CCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARALl----k~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.||||||||++|||+|. ++||++|||||||+||+.+...+.+.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~ 381 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR 381 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHH
Confidence 39999999999999998 7899999999999999999999998753
No 115
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.48 E-value=9.5e-16 Score=162.67 Aligned_cols=121 Identities=19% Similarity=0.151 Sum_probs=80.0
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEC-CEeCCCCCHHHHhcceEEEccCCccccc-cH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQM-DI 542 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~id-G~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI 542 (637)
.-++++++. .+|++++|+|+||||||||++.|+|+.. |..|+|.++ |.+.. ...+..+++++|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888874 5899999999999999999999999999 999999997 76642 2456789999999998865 78
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 006650 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 543 ~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALl 603 (637)
+|+-. ...+.+++.+ .+.++...+ |+.-..+. ..+| ||+||+|||++++
T Consensus 279 ~e~~l----~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGL----WHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCC----CCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhh----cCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 88522 2345555432 222333332 22222222 3799 9999999999864
No 116
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.48 E-value=4.6e-17 Score=176.78 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=90.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CCHHHHhcceEEEc---------c
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKIGFVG---------Q 533 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----i~~~~lR~~I~~V~---------Q 533 (637)
+|+++ + .++|+.++|+|||||||||+++.|+|+++|++|+|.++|.++.. ++...+++.+++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 38999999999999999999999999999999999999988742 11223455666655 8
Q ss_pred CCccc--c-----ccHHHHHhcCCCC-------CC-CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 006650 534 EPQLL--Q-----MDIKSNIMYGCPK-------DV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (637)
Q Consensus 534 d~~LF--~-----gTI~eNI~~g~~~-------~~-~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaI 598 (637)
+|.++ . .|+.+|+.++... .. +..+..+.+...++.++. -...|||||+|| |
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR--L 302 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR--L 302 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--E
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--h
Confidence 88763 2 3788888653100 11 112333334433333221 113799999999 9
Q ss_pred HHHHcCCCCEEE
Q 006650 599 ARAILRDPAILL 610 (637)
Q Consensus 599 ARALlk~p~ILI 610 (637)
||||..+|++..
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999875
No 117
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.47 E-value=1.1e-16 Score=168.13 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=93.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC--------CCCCceEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV---G 532 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y--------~p~~G~I~idG~di~~i~---------------~~~lR~~I~~V---~ 532 (637)
++++|+|+||||||||++.|+|++ .|+.|+|.+||.++.+.+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 35678889988 7
Q ss_pred cCCc-cccccHHHHHhcCCCCCCCHHHHHHHHH-HcCHHHHHHcCCCCcccccCC-------CCCChHHHHHHHHHHHHc
Q 006650 533 QEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAK-QAYVHEFILSLPCGYETLVDD-------DLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 533 Qd~~-LF~gTI~eNI~~g~~~~~~de~v~~A~~-~a~l~~fI~~lP~G~dT~vge-------~~LSGGQkQRIaIARALl 603 (637)
|++. .|+.++.||..++.+ +.+.+... .....+. ..+ ++.-|.++- .++||||+||...+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH-----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEE
Confidence 8876 479999999988832 23322220 0000000 011 122334432 168999999999999999
Q ss_pred CCCCEEEEeCC
Q 006650 604 RDPAILLLDEA 614 (637)
Q Consensus 604 k~p~ILILDEa 614 (637)
.+|+++ |||
T Consensus 158 ~k~dl~--de~ 166 (318)
T 1nij_A 158 TKTDVA--GEA 166 (318)
T ss_dssp ECTTTC--SCT
T ss_pred ECcccC--CHH
Confidence 999987 888
No 118
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.47 E-value=1.9e-15 Score=142.73 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=74.4
Q ss_pred EEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEE
Q 006650 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (637)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (637)
-+|++++|.+ ..+++++||++++|+++||+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+|
T Consensus 10 ~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~ 80 (158)
T 1htw_A 10 DEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKM 80 (158)
T ss_dssp SHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEE
T ss_pred CHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccc
Confidence 3466777743 35899999999999999999999999999999999999 9999999999887521 1112 279
Q ss_pred ccCCccccccHHHHHh-cC
Q 006650 532 GQEPQLLQMDIKSNIM-YG 549 (637)
Q Consensus 532 ~Qd~~LF~gTI~eNI~-~g 549 (637)
+|++.+|.-|+.||+. +|
T Consensus 81 ~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 81 IYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEECTTCSCTTHHHHST
T ss_pred eeccccccCCcHHHHHHcC
Confidence 9999999999999995 45
No 119
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.46 E-value=1.6e-14 Score=169.97 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=91.2
Q ss_pred CcEEEEEEEEECC----CCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH
Q 006650 448 GHVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 448 ~~I~f~nVsF~Y~----~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~ 523 (637)
+.|++++...-.- +..+..|++|+||++++|++++|+|||||||||+++.+.+..-
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-------------------- 698 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-------------------- 698 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------
Confidence 4678877544220 1113579999999999999999999999999999999864311
Q ss_pred HhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 524 lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
+.+.-++||++..-+ ++.++| ....++.|.+.. |-..+|+|++|+..|+|+ .
T Consensus 699 ~aq~g~~vpa~~~~i--~~~d~i----------------~~~ig~~d~l~~---------~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 699 MAQIGSYVPAEEATI--GIVDGI----------------FTRMGAADNIYK---------GRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp HHHHTCCBSSSEEEE--ECCSEE----------------EEEC-------------------CCHHHHHHHHHHHHHH-C
T ss_pred HhhcCccccchhhhh--hHHHHH----------------HHhCChHHHHHH---------hHHHhhHHHHHHHHHHHh-c
Confidence 011111233322100 000111 001111221111 124689999999999999 8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
.+|+++||||||++||+.....+..++++.+.
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~ 782 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFI 782 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888764
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.45 E-value=9.4e-16 Score=154.76 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcccc-ccHHHHHhcCC--
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-- 550 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~---r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~-- 550 (637)
+++.++|+|+|||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++. .++.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999 999999999999887642 235566777788877654 58889885410
Q ss_pred ---C------CCCCHHHHHHHHHHcCHHHHHHcCCCCccc-------------ccCC---CCCChHHHHHHHHHHHH-cC
Q 006650 551 ---P------KDVKNEDIEWAAKQAYVHEFILSLPCGYET-------------LVDD---DLLSGGQKQRIAIARAI-LR 604 (637)
Q Consensus 551 ---~------~~~~de~v~~A~~~a~l~~fI~~lP~G~dT-------------~vge---~~LSGGQkQRIaIARAL-lk 604 (637)
. ...+.++..... .+ .+.+. .+.. ..||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~----------~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALD----------KI-CEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHH----------TT-CCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCCCCHHHHHHHH----------hh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 0 011222222111 11 11110 1111 26899 66 889 99
Q ss_pred CCCEEEEe----CCCCCCCHHHHHHHHHHHH
Q 006650 605 DPAILLLD----EATSALDSESEHYVKANTL 631 (637)
Q Consensus 605 ~p~ILILD----EaTSaLD~~tE~~I~~~il 631 (637)
+|++++|| |||++||..++..+.+.+.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~ 194 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLR 194 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHH
Confidence 99999999 9999999999988888763
No 121
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=9.9e-14 Score=142.63 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=87.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHH-hcCCCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK 552 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI-~~g~~~ 552 (637)
.+++|+.++|+|++|||||||++.+++... .|++.. |.+..+ +..+.|++.+... ..+.+++ .++ .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g--~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELP------TGPVIYLPAEDPP--TAIHHRLHALG--A 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH--T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCC------CccEEEEECCCCH--HHHHHHHHHHH--h
Confidence 378999999999999999999999998654 577643 544321 3568888777643 3344443 234 1
Q ss_pred CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HH
Q 006650 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HY 625 (637)
Q Consensus 553 ~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTS--aLD~~tE---~~ 625 (637)
+.++++..++++...+. ...+. ..||+||+|++ |+++++|+++|+||||+ ++|..+. ..
T Consensus 93 ~~~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 34445544444444322 11222 37999998875 78999999999999999 9997554 45
Q ss_pred HHHHH
Q 006650 626 VKANT 630 (637)
Q Consensus 626 I~~~i 630 (637)
+.+.+
T Consensus 159 ~~~~L 163 (279)
T 1nlf_A 159 VIGRM 163 (279)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.40 E-value=3.5e-15 Score=149.71 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=91.3
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh--cCCCCCCceEEECCEeCCCCCHHHHhc
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~--r~y~p~~G~I~idG~di~~i~~~~lR~ 526 (637)
.++++++++.|++-+ .+|.+ .|++|+.++|+||||||||||++.|+ ++.++.+|.+.+++.+..+ .....++
T Consensus 6 ~~~~~~i~tg~~~lD--~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFD--ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTTG--GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCHhHH--HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 466788888886431 24544 79999999999999999999999999 7767778888888754321 2234456
Q ss_pred ceEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 006650 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (637)
Q Consensus 527 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~ 605 (637)
.+++++|+...+. -++.++.... . ....++. +. .-...+-++.++...+..-..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-----------~~-----------~~~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSV-V-GLPSEEK-----------FV-----------LEDRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHhhcCCEEEEEccccc-c-ccccccc-----------ee-----------ccCcccHHHHHHHHHHHHHhhC
Confidence 6888888754331 1222222111 0 0000000 00 0012234454444444444579
Q ss_pred CCEEEEeCCCCCCC-----HHHHHHHHHHHHHHh
Q 006650 606 PAILLLDEATSALD-----SESEHYVKANTLDSL 634 (637)
Q Consensus 606 p~ILILDEaTSaLD-----~~tE~~I~~~il~~l 634 (637)
|++++|||||+.|| ....+.+.+. ++.+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l-~~~l 168 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKL-NTIL 168 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHH-HHHH
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHH-HHHH
Confidence 99999999999997 5555445553 4444
No 123
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.40 E-value=1.2e-14 Score=159.17 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=94.3
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHH--HhcceEEEccCCccc-cc
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM 540 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~----~~~--lR~~I~~V~Qd~~LF-~g 540 (637)
-+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|..... ... .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36889999999999999999999999999999999999999999887765431 122 477899999998755 67
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCccccc----CC--C--CCChHHHHHHHHHHHHcCC-C-CEEE
Q 006650 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV----DD--D--LLSGGQKQRIAIARAILRD-P-AILL 610 (637)
Q Consensus 541 TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~v----ge--~--~LSGGQkQRIaIARALlk~-p-~ILI 610 (637)
|+++||.++.. .|+|..+ |- + ++-.--+||+.++|++..+ | .+|+
T Consensus 363 tV~e~l~~a~~-------------------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLL 417 (503)
T 2yhs_A 363 VIFDAIQAAKA-------------------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVML 417 (503)
T ss_dssp HHHHHHHHHHH-------------------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEE
T ss_pred HHHHHHHHHHh-------------------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEE
Confidence 89999987621 1222222 11 0 1222336899999988654 5 3455
Q ss_pred EeCCCCCCCHHH
Q 006650 611 LDEATSALDSES 622 (637)
Q Consensus 611 LDEaTSaLD~~t 622 (637)
..+||.+.|...
T Consensus 418 vLDattGq~al~ 429 (503)
T 2yhs_A 418 TIDASTGQNAVS 429 (503)
T ss_dssp EEEGGGTHHHHH
T ss_pred EecCcccHHHHH
Confidence 555888766543
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.39 E-value=2.6e-14 Score=142.12 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=80.3
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHHHhcceEEEccCCccccccH-----HH
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI-----KS 544 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI-----~e 544 (637)
.-..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|...+ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346899999999999999999999999999986 78999999977653 24678999999999987644 36
Q ss_pred HHhcCCC-CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 006650 545 NIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (637)
Q Consensus 545 NI~~g~~-~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE 623 (637)
|+.+... ...+.+++ +.++++++++||| ||+++.
T Consensus 86 ~~~~~~~~yg~~~~~v----------------------------------------~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNYYGTSREAI----------------------------------------EQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEEEEEEHHHH----------------------------------------HHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhccCCCCHHHH----------------------------------------HHHHhcCCeEEEE-----ECHHHH
Confidence 6654311 01112222 3333446999999 999999
Q ss_pred HHHHHHH
Q 006650 624 HYVKANT 630 (637)
Q Consensus 624 ~~I~~~i 630 (637)
..+.+.+
T Consensus 121 ~~i~~~l 127 (219)
T 1s96_A 121 QQIRQKM 127 (219)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 9998864
No 125
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=1.2e-13 Score=143.86 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=82.2
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCCHHHHh-cceEEEccCCcc------ccccH
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLR-EKIGFVGQEPQL------LQMDI 542 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i---dG~di~~i~~~~lR-~~I~~V~Qd~~L------F~gTI 542 (637)
+++.+|++++|+|+||||||||+|.|. +.+|++|+|.+ +|+++..... ..+ +.+|+|+|+|-+ .+-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 356789999999999999999999999 99999999999 9998876432 223 369999999965 35678
Q ss_pred HHHH--hcC-----------C-CCCCCHHHHHHHHHHcCHHH-HHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 006650 543 KSNI--MYG-----------C-PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (637)
Q Consensus 543 ~eNI--~~g-----------~-~~~~~de~v~~A~~~a~l~~-fI~~lP~G~dT~vge~~LSGGQkQRIaIAR 600 (637)
||+ .|+ | ......+.+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 888 443 1 11223467888888888764 333322 358998888999998
No 126
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.33 E-value=1.7e-13 Score=135.55 Aligned_cols=135 Identities=10% Similarity=-0.004 Sum_probs=91.5
Q ss_pred cCcccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc---ceEEEccCCccccc
Q 006650 465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLLQM 540 (637)
Q Consensus 465 ~~vL~~isl-~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~---~I~~V~Qd~~LF~g 540 (637)
.+.|+++.. .+++|+.++|+||||||||||++.+++...+++|.|.+.+.+. +.+.+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 357899988 8999999999999999999999999999888889988866543 3333333 2344433321
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCC
Q 006650 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL 618 (637)
Q Consensus 541 TI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~--ILILDEaTSaL 618 (637)
.+++..- . ... ..++........|.+|.++.+.+.+.-.+|+ ++|+||||+.+
T Consensus 82 --~~~~~~~-~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 82 --EKKLIII-D-ALM---------------------KEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp --TTTEEEE-E-CCC-------------------------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred --hCCEEEE-e-ccc---------------------cccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 0111111 0 010 0000000112349999999888888778999 99999999888
Q ss_pred --CHHHHHHHHHHHH
Q 006650 619 --DSESEHYVKANTL 631 (637)
Q Consensus 619 --D~~tE~~I~~~il 631 (637)
|++....+.+.+.
T Consensus 137 ~~d~~~~~~~~~~l~ 151 (235)
T 2w0m_A 137 LDKPAMARKISYYLK 151 (235)
T ss_dssp SSCGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 9877777776653
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.32 E-value=9.6e-13 Score=129.28 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=72.2
Q ss_pred CcccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 466 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 466 ~vL~~isl-~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
+.|+++.. .+++|+.++|+|++|||||||++.+++ .+..+.+++++.+ .++.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------
Confidence 46777765 799999999999999999999999999 4444455554422 122222222
Q ss_pred HHh-cCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHHcCC-CCEEEEeCCCCCCCH
Q 006650 545 NIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAILRD-PAILLLDEATSALDS 620 (637)
Q Consensus 545 NI~-~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGG--QkQRIaIARALlk~-p~ILILDEaTSaLD~ 620 (637)
... ++ .+.+++ .+.+ .+ ...|++ |+|+++.||+++++ |+++|+||||+.+|.
T Consensus 65 ~~~~~~----~~~~~~------------~~~~------~~--~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETRG----LNPEEA------------LSRF------IL--FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTTT----CCHHHH------------HHHE------EE--ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhcC----CChHHH------------hhcE------EE--EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 111 11 112221 1111 01 123344 47899999999986 999999999999997
Q ss_pred HH
Q 006650 621 ES 622 (637)
Q Consensus 621 ~t 622 (637)
..
T Consensus 121 ~~ 122 (220)
T 2cvh_A 121 EE 122 (220)
T ss_dssp GG
T ss_pred cC
Confidence 54
No 128
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.30 E-value=2.2e-14 Score=142.23 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEE--------CCEeCCC-CCHHHHhcceEEEccCC------ccc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLTD-LDIRWLREKIGFVGQEP------QLL 538 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y---~p~~G~I~i--------dG~di~~-i~~~~lR~~I~~V~Qd~------~LF 538 (637)
.+.++||+|+|||||||++++|.+.| .++.|+|.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 36789999999999999999999877 788999988 7888763 56678999999999986 667
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--C-CCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 006650 539 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--D-LLSGGQKQRIAIARAILRDPAILLLDEAT 615 (637)
Q Consensus 539 ~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~-~LSGGQkQRIaIARALlk~p~ILILDEaT 615 (637)
..++.+|++ ++++..++..+.+++++.+...+.++.+.. . -++|+ .++++++++++++|+++++
T Consensus 84 ~~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 777877762 578999999999999999887777776642 2 57776 5677889999999999986
Q ss_pred C
Q 006650 616 S 616 (637)
Q Consensus 616 S 616 (637)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 129
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.30 E-value=4.8e-15 Score=152.41 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=104.8
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCC-ccc-cccHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK 543 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~-~LF-~gTI~ 543 (637)
.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++.+......++.+++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999987 79999999987766667788899999986 333 34667
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-------
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS------- 616 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTS------- 616 (637)
|||..... .-.+++.. . ..+..++++ ..|||||+||..||+|+..+|++| |||+.
T Consensus 110 Deid~~~~-~r~~~~~~-~-----~~~~~~~~l---------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCP-RRSDRETG-A-----SVRVVNQLL---------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC----------------CTTHHHHHH---------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhc-ccCCCcch-H-----HHHHHHHHH---------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 77765422 11111100 0 000111100 258999999999999999999975 99974
Q ss_pred -----CCCHHHHHHHHHHHH
Q 006650 617 -----ALDSESEHYVKANTL 631 (637)
Q Consensus 617 -----aLD~~tE~~I~~~il 631 (637)
--|.+....|.+.++
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 347777777777654
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.30 E-value=6.5e-13 Score=139.78 Aligned_cols=127 Identities=15% Similarity=0.078 Sum_probs=87.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH----HHhcce--EEEccCCccc-cccHHHHH
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLREKI--GFVGQEPQLL-QMDIKSNI 546 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~----~lR~~I--~~V~Qd~~LF-~gTI~eNI 546 (637)
..++|++++|||||||||||+++.|+|++.|++|+|.++|.|+...... .+++++ .+++|+..++ ..|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999776633 345554 4999998887 46789998
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 006650 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (637)
Q Consensus 547 ~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~t 622 (637)
.++...+. +.+ =+||. |- ..-..=-++.-.++|++..++++++||..|. .|...
T Consensus 205 ~~~~~~~~---------------d~v-----liDta-G~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~ 259 (328)
T 3e70_C 205 QHAKARGI---------------DVV-----LIDTA-GRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE 259 (328)
T ss_dssp HHHHHHTC---------------SEE-----EEEEC-CSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH
T ss_pred HHHHhccc---------------hhh-----HHhhc-cchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH
Confidence 76510000 000 01221 11 0001112233349999999999999996665 44433
No 131
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.29 E-value=1.5e-12 Score=151.90 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=86.5
Q ss_pred CcEEEEEEEEECCCC--CCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCHHHH
Q 006650 448 GHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWL 524 (637)
Q Consensus 448 ~~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~i~~~~l 524 (637)
+.|++++...-.-.. .+..+++|+||+ ++|++++|+|||||||||++|+++|+.-+ +.|. .+.. -
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~ 643 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----Q 643 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----S
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----h
Confidence 357777653211000 124699999999 99999999999999999999999997532 2231 1111 1
Q ss_pred hcceEEEccCCcccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 525 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
+..++++.| +|. -++.||+..+ ...+|+|++ +++.+....
T Consensus 644 ~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------------~stf~~e~~-~~~~il~~a 684 (800)
T 1wb9_A 644 KVEIGPIDR---IFTRVGAADDLASG-----------------------------------RSTFMVEMT-ETANILHNA 684 (800)
T ss_dssp EEEECCCCE---EEEEEC----------------------------------------------CHHHHH-HHHHHHHHC
T ss_pred cccceeHHH---HHhhCCHHHHHHhh-----------------------------------hhhhhHHHH-HHHHHHHhc
Confidence 245677766 332 2333433211 123566665 455555568
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Q 006650 604 RDPAILLLDEATSALDSESEHYVKANTLDSLLQ 636 (637)
Q Consensus 604 k~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~ 636 (637)
.+|+++||||||+++|+.....+..++++.+.+
T Consensus 685 ~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 685 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 999999999999999987776665556666643
No 132
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.27 E-value=3.7e-12 Score=118.72 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=47.3
Q ss_pred CcccccC----C---CCCChHHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 578 GYETLVD----D---DLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 578 G~dT~vg----e---~~LSGGQkQRIaIA------RALlk~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
||++.+- + ..||||||||++|| |||+++|+++||||||++||+++...+.+.+.
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 107 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 107 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHH
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence 7787761 2 38999999999876 99999999999999999999999999998764
No 133
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.27 E-value=2e-12 Score=151.92 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=79.9
Q ss_pred HHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHH
Q 006650 493 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572 (637)
Q Consensus 493 TL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI 572 (637)
|+-.+.-+.+.|..|+|.++|+++.++....+.+.++++.+ +.+...+...-+++.+..+. ..+++
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~~--~~~~L 448 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIEK--RLEFL 448 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHHH--HHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHHH--HHHHH
Confidence 44555667789999999999999866443333333333211 11110000111112221111 23455
Q ss_pred HcCCCCcccc-cCC--CCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 573 LSLPCGYETL-VDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 573 ~~lP~G~dT~-vge--~~LSGGQkQRIaIARALlk~p~--ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
..+ |++.. .+. ..||||||||++|||||.++|+ +|||||||++||+.....+.+.+ +.|.
T Consensus 449 ~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L-~~L~ 513 (916)
T 3pih_A 449 VDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTL-KKLR 513 (916)
T ss_dssp HTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHH-HHTT
T ss_pred HHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHH-HHHH
Confidence 554 44432 233 3899999999999999999887 99999999999999999999875 5554
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.26 E-value=6.8e-14 Score=155.67 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=97.7
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCcccc--ccHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ--MDIK 543 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~--gTI~ 543 (637)
.+++++++.+++|+.++|+|||||||||+++.|+|+++|++|.|.++|.+--.++. +..++++.|+.. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999876333221 456888888776 43 3777
Q ss_pred HHHhcC---CC-----CCCCHHHHHHHHHHcC-------------HHHHHHcC---CCCcccccC--------C-CCCCh
Q 006650 544 SNIMYG---CP-----KDVKNEDIEWAAKQAY-------------VHEFILSL---PCGYETLVD--------D-DLLSG 590 (637)
Q Consensus 544 eNI~~g---~~-----~~~~de~v~~A~~~a~-------------l~~fI~~l---P~G~dT~vg--------e-~~LSG 590 (637)
++++.. +| .+..++|...+++.++ +.+.+.++ |.|....+. . ..+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 776432 11 1455566666655543 33444432 334433222 1 25799
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 006650 591 GQKQRIAIARAILRDPAILLLDEATSALDSES 622 (637)
Q Consensus 591 GQkQRIaIARALlk~p~ILILDEaTSaLD~~t 622 (637)
|||||.++|.+ | |++||+++
T Consensus 404 G~~~R~~~ai~-----------E-~~GlDp~~ 423 (511)
T 2oap_1 404 NTRLRRTKEVN-----------E-ILGIDPVD 423 (511)
T ss_dssp SCEEEEEEEEE-----------E-EEECCSSS
T ss_pred CCceEEEEEEE-----------E-EcCcccCC
Confidence 99999887621 5 77777654
No 135
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.24 E-value=4.5e-12 Score=126.39 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=73.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCceEEECCEeCCC-CCHHHHhcceEEEccCCccccccHHHH
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPLTD-LDIRWLREKIGFVGQEPQLLQMDIKSN 545 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p-----~~G~I~idG~di~~-i~~~~lR~~I~~V~Qd~~LF~gTI~eN 545 (637)
-+++|+.++|+||||||||||++.+++ ..+| .+|.+++++.+.-. -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 67899999865311 1133455667777765 5677
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 006650 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621 (637)
Q Consensus 546 I~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~ 621 (637)
+.+.. ..+.++..+.++. +.+.+.. .+|+++|+||+|+.+|++
T Consensus 93 ~~~~~--~~~~~~~~~~~~~--~~~~~~~-----------------------------~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQLLYQ--ASAMMVE-----------------------------SRYALLIVDSATALYRTD 135 (243)
T ss_dssp EEEEE--CCSHHHHHHHHHH--HHHHHHH-----------------------------SCEEEEEEETSSGGGC--
T ss_pred eEEEe--cCCHHHHHHHHHH--HHHHHhc-----------------------------CCceEEEEeCchHHHHHH
Confidence 76652 2333443333221 1122211 689999999999999986
No 136
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.23 E-value=1.6e-13 Score=143.47 Aligned_cols=94 Identities=18% Similarity=0.332 Sum_probs=77.2
Q ss_pred cCCCcEEEEEEEEECCCCCCcCcccceeEEe-------------------eCCCEEEEEcCCCCcHHHHHHHHhcCCC--
Q 006650 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE-- 503 (637)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I-------------------~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-- 503 (637)
...+.|+++||++.|. ++++++|+++ ++|+++||+|+||||||||+++|.|++.
T Consensus 33 ~~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 33 GINEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp HHCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred CCccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 3456799999999993 5999999988 9999999999999999999999999999
Q ss_pred CCCceEEE---CCEeCCCCCHHHHhcceEEEccCCccc-cccHHHHHhc
Q 006650 504 PSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMY 548 (637)
Q Consensus 504 p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~ 548 (637)
|++|+|.+ ||.+.. ...++.+++| |+..++ .-|+.+|+.+
T Consensus 108 ~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp TTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 99999999 998752 2456778998 765443 3466666644
No 137
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=2.2e-12 Score=134.27 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=70.5
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCCHHHHhcceEEEccCCcc------------
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQL------------ 537 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~L------------ 537 (637)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|+++.........+.+|+|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 99998765422222469999999853
Q ss_pred ----c-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCH-HHHHHcCC
Q 006650 538 ----L-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYV-HEFILSLP 576 (637)
Q Consensus 538 ----F-~gTI~eNI~~g~~--~~~~de~v~~A~~~a~l-~~fI~~lP 576 (637)
| +-|+ ||++|+.. ....++++.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4 4467 99988521 12235679999999999 46655544
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=5.8e-12 Score=133.15 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r-~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~ 558 (637)
.+.|+||+|+||||+++.++| ++.|+.|.|.++|.+...... -+..+++++|++++.-..- + .+ ..+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPS-D---MG---NNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHh-h---cC---CcchHH
Confidence 499999999999999999999 899999999999988765433 3788999999987632110 0 01 011122
Q ss_pred HHHHHH----HcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 559 IEWAAK----QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 559 v~~A~~----~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
+.+.++ ..++++++ .||| +..+|+++|+|||++ ||.++...+.+.+
T Consensus 109 ~~~~i~~~~~~~~~~~~~--------------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~l 158 (354)
T 1sxj_E 109 IQELLKEVAQMEQVDFQD--------------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTM 158 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------------------CCEEEEEECTTS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccc--------------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHH
Confidence 333332 22222222 5677 788999999999999 9999988887764
No 139
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.19 E-value=1.3e-13 Score=137.59 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=44.1
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-cCC------------CCCCceEEECCEeCCCCCHHHHhcceEEEc
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-r~y------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~ 532 (637)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.++...+.+.++.. ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4678999999999999999999999999999999 999 7777765 6665555555555433 23
Q ss_pred cCCccccccHHHHH
Q 006650 533 QEPQLLQMDIKSNI 546 (637)
Q Consensus 533 Qd~~LF~gTI~eNI 546 (637)
++..++.+++.+|+
T Consensus 90 ~~~~~~~~~~~~~~ 103 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF 103 (231)
T ss_dssp TTCEEEEEEETTEE
T ss_pred cCceehhhhhcccc
Confidence 44555455555554
No 140
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.19 E-value=1.7e-11 Score=117.15 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARALl----k~p~ILILDEaTSaLD~~tE~~I~~~il 631 (637)
.||||||||++||||+. ++||++||||||++||+.++..+.+.+.
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~ 112 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIK 112 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHH
Confidence 79999999999999994 7789999999999999999999999753
No 141
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.18 E-value=1e-12 Score=133.29 Aligned_cols=98 Identities=21% Similarity=0.199 Sum_probs=76.2
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEeC-CCCCHHHHhcceEEEcc
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPL-TDLDIRWLREKIGFVGQ 533 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~---r~y~p~~G~I~--------idG~di-~~i~~~~lR~~I~~V~Q 533 (637)
.++++.+ ++|+++||+|+|||||||++++|+ |++.|++|.|. .+|.++ .+.....+++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3555544 899999999999999999999999 99999999999 999998 45678899999999995
Q ss_pred ------CCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHc
Q 006650 534 ------EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574 (637)
Q Consensus 534 ------d~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~ 574 (637)
..++++.++.+||+ .+++..++..+..++.+.+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHH
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHH
Confidence 46688888888874 2456556655555555543
No 142
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=4e-12 Score=137.80 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=87.1
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHh
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 547 (637)
-+++||++++|+.++|||++|||||||++.|++..+ .+++.+... +...+++|.|+. -..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSS-SCEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecC-cceEEEEeccc
Confidence 479999999999999999999999999999999843 345544433 345678888765 11223444332
Q ss_pred cCCC----CCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 006650 548 YGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621 (637)
Q Consensus 548 ~g~~----~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge--~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~ 621 (637)
+... ..... +..+..+.+. ..+.- +|-. .+ ..||+||+||.++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~--~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTR--VLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSS--EEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHHH--hhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2100 00111 1111111111 11110 0111 12 26999999999999999999999999 889987
Q ss_pred HHHHHHHHHHH
Q 006650 622 SEHYVKANTLD 632 (637)
Q Consensus 622 tE~~I~~~il~ 632 (637)
++ ...+.+.+
T Consensus 283 ~~-~~~~~l~~ 292 (416)
T 1udx_A 283 EE-EAVKALAD 292 (416)
T ss_dssp CH-HHHHHHHH
T ss_pred hH-HHHHHHHH
Confidence 65 33333333
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.13 E-value=1.2e-11 Score=129.02 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=74.0
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCC
Q 006650 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 550 (637)
Q Consensus 471 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 550 (637)
++++.++|++++|+|++||||||+++.|++++.+++|+|.+.+.|.... . .
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--~-------------------a-------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--A-------------------A-------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--H-------------------H--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--H-------------------H--------
Confidence 3455789999999999999999999999999999999999988775321 0 0
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH---HHHHHHcCCCCEEEEeCCCC
Q 006650 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATS 616 (637)
Q Consensus 551 ~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI---aIARALlk~p~ILILDEaTS 616 (637)
.+++...++..+ ++. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 148 -----~eqL~~~~~~~g-----------l~~-~--~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 -----IEQLKIWGERVG-----------ATV-I--SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHHT-----------CEE-E--CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHHcC-----------CcE-E--ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 122222222222 111 1 24589999999 99999999999999999985
No 144
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.13 E-value=1.7e-11 Score=134.71 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=56.5
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~ 521 (637)
++.+++... ..+|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 456666543 2479999999999 9999999999999999999999999999999999999876543
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.10 E-value=3.8e-11 Score=124.61 Aligned_cols=129 Identities=18% Similarity=0.138 Sum_probs=92.1
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcce
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
.+.++++++.|++. . ++++|+ +|++++++|++|+||||++..|++++.+.+|+|.+.+.|.+.-...+
T Consensus 76 ~~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~----- 143 (295)
T 1ls1_A 76 ATVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE----- 143 (295)
T ss_dssp HHHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH-----
T ss_pred HHHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH-----
Confidence 36678888899532 1 688888 99999999999999999999999999999999999988875411110
Q ss_pred EEEccCCccccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 006650 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~I 608 (637)
++...++.. |++-......-.-.+-||.+|+++..+++++
T Consensus 144 -----------------------------ql~~~~~~~-----------~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 -----------------------------QLRLLGEKV-----------GVPVLEVMDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp -----------------------------HHHHHHHHH-----------TCCEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred -----------------------------HHHHhcccC-----------CeEEEEcCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 000001111 1221111112234456899999998899999
Q ss_pred EEEeCC-CCCCCHHHHHHHHHH
Q 006650 609 LLLDEA-TSALDSESEHYVKAN 629 (637)
Q Consensus 609 LILDEa-TSaLD~~tE~~I~~~ 629 (637)
+|+||| ++++|...-..+.+.
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~ 205 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARL 205 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHH
Confidence 999999 999998776666543
No 146
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.09 E-value=6.9e-11 Score=138.37 Aligned_cols=110 Identities=18% Similarity=0.314 Sum_probs=74.4
Q ss_pred CCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHH-------HHHHHHHcCHHHHHHc
Q 006650 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED-------IEWAAKQAYVHEFILS 574 (637)
Q Consensus 502 y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~-------v~~A~~~a~l~~fI~~ 574 (637)
|.|....|.++|++|.+ +...||.|++.|..+-..+.++ +.+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 56777889999987654 3457788888775222233311 11222221 23333
Q ss_pred CCCCcccc-cCC--CCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 575 LPCGYETL-VDD--DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 575 lP~G~dT~-vge--~~LSGGQkQRIaIARALlk~p--~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
+ |++-. .+. ..|||||||||+||+||..+| ++|||||||++||+..-..+.+.+ +.|.
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L-~~Lr 553 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL-KSMR 553 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHH-HHHH
Confidence 3 34321 232 389999999999999999984 999999999999999998888864 5553
No 147
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=6.8e-11 Score=110.17 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=37.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeC
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL 516 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di 516 (637)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM 75 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence 56766 9999999999999999999999999987 57 677766543
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.05 E-value=2.1e-13 Score=140.03 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=100.0
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
-+++++...|.+ ..+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.++
T Consensus 50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 345677777743 35899999999999 99999999999999999999886 899999998876555556677788
Q ss_pred EEccCCc-cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 530 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 530 ~V~Qd~~-LF-~gTI~eNI-~~g~~~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
+++|+.. .+ .-++.||| .++..... ..++..+.+ ..++. .|||||+||..+|+|+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHHH-------------HHTTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEe
Confidence 8999864 33 34667777 44411110 112222221 22222 3789999999999999
Q ss_pred cCCCCEEEEeCCC
Q 006650 603 LRDPAILLLDEAT 615 (637)
Q Consensus 603 lk~p~ILILDEaT 615 (637)
..+|++ ||++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 68774
No 149
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.04 E-value=4.3e-11 Score=115.27 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
|++++|+||||||||||+++|+|+++ |.+|++ +|.++...+.+.+++.+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 68899999999999999999999998 888986 89888888887777764 3777888888888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHc----------CHHHHHHc--CC------------CCcccccCCC--CCChHHHHHHHH
Q 006650 545 NIMYGCPKDVKNEDIEWAAKQA----------YVHEFILS--LP------------CGYETLVDDD--LLSGGQKQRIAI 598 (637)
Q Consensus 545 NI~~g~~~~~~de~v~~A~~~a----------~l~~fI~~--lP------------~G~dT~vge~--~LSGGQkQRIaI 598 (637)
|+ ||. +.+++.++++.. ++. .+.. .+ +-+...+-++ .-....+||++-
T Consensus 76 ~~-yg~----~~~~i~~~l~~g~~~il~~~~~g~~-~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 76 NY-YGS----TVASVKQVSKSGKTCILDIDMQGVK-SVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA 149 (186)
T ss_dssp EE-EEE----EHHHHHHHHHTTCEEEEECCHHHHH-HHHTCGGGCCEEEEEECSCC------------------------
T ss_pred ee-ccC----cHHHHHHHHHcCCeEEEEEcHHHHH-HHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 76 662 245566555541 222 2222 11 2333333332 234567889999
Q ss_pred HHHHc-----CCCCEEEEeC
Q 006650 599 ARAIL-----RDPAILLLDE 613 (637)
Q Consensus 599 ARALl-----k~p~ILILDE 613 (637)
|++-+ +.++.+|..+
T Consensus 150 ~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ---------CCCCSEEEECS
T ss_pred HHHHHHhhcccCCcEEEECc
Confidence 99866 5678887765
No 150
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.03 E-value=1.2e-10 Score=125.62 Aligned_cols=108 Identities=14% Similarity=0.219 Sum_probs=71.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCc-----eEEECCEeC-CCCCHHHHhcceEEEccCCccccccHHHH
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG-----QIYIDGFPL-TDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~L--L~r~y~p~~G-----~I~idG~di-~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 545 (637)
-|++|++++|+||||||||||++. +.+..+++.| .|++|+.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4566666444 899998763 22223345566777665 67888
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHHH
Q 006650 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSESE 623 (637)
Q Consensus 546 I~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl--k~p~ILILDEaTSaLD~~tE 623 (637)
+.+.. ..+.++..+.+ .-+++++ .+|+++|+||+|+.+|.+..
T Consensus 247 i~~~~--~~~~~~~~~~l---------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYAR--AYNADHQLRLL---------------------------------DAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEE--CCSHHHHHHHH---------------------------------HHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEec--cCChHHHHHHH---------------------------------HHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 88773 22223222222 1122221 47999999999999997644
No 151
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.03 E-value=1.1e-11 Score=119.61 Aligned_cols=143 Identities=20% Similarity=0.158 Sum_probs=82.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CCceEEECCEeCCC--CCHHHHhcceEEEccCCccccccHHHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p-----------~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 546 (637)
+++|+|++|||||||++.+.+...| ++|+|.+||.++.- +|....++..++++|...-.++- |
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~----i 106 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA----L 106 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE----E
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE----E
Confidence 7999999999999999999998765 57999999976531 22222222333333321100000 0
Q ss_pred hcCCCCCCCH-HHHHHHHHHcCHHHHHHc-CCCCcc-cccCCC-CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 006650 547 MYGCPKDVKN-EDIEWAAKQAYVHEFILS-LPCGYE-TLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (637)
Q Consensus 547 ~~g~~~~~~d-e~v~~A~~~a~l~~fI~~-lP~G~d-T~vge~-~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~t 622 (637)
... +.++ +....+.+. + +.+.+ -+.+.- -.++.. .|..-..++..+||++.++|+++++| |||+|.++
T Consensus 107 ~v~---d~~~~~s~~~~~~~--~-~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 107 LVY---DIAKHLTYENVERW--L-KELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp EEE---ETTCHHHHHTHHHH--H-HHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred EEE---ECcCHHHHHHHHHH--H-HHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 000 1111 111111100 1 11111 111111 112332 44433345678999999999999999 99999999
Q ss_pred HHHHHHHHHHHh
Q 006650 623 EHYVKANTLDSL 634 (637)
Q Consensus 623 E~~I~~~il~~l 634 (637)
...+.+.+.+.+
T Consensus 179 v~~l~~~l~~~i 190 (191)
T 1oix_A 179 VEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
No 152
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.02 E-value=2.7e-13 Score=137.04 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=100.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceE
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (637)
.+++++...|.+ ..+++++++++++| ++|+||+|||||||++.+++... .|.|.++|.++.+......++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456777777743 35899999999999 99999999999999999999886 899999998875555555667788
Q ss_pred EEccCCc-cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 006650 530 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (637)
Q Consensus 530 ~V~Qd~~-LF-~gTI~eNI-~~g~~~~~----~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARAL 602 (637)
.++|+.. .+ .-++.||| .++..... .+++..+.+ ..++. .|||||+||..+|+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEc
Confidence 8888864 33 34567777 45421110 112222221 22222 3679999999999999
Q ss_pred cCCCCEEEEeCCCC
Q 006650 603 LRDPAILLLDEATS 616 (637)
Q Consensus 603 lk~p~ILILDEaTS 616 (637)
..+|++ +|++.-
T Consensus 161 t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 161 TNRPDI--LDPALL 172 (254)
T ss_dssp ESCGGG--SCGGGG
T ss_pred cCCchh--CCHHHc
Confidence 999987 788765
No 153
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.01 E-value=4.5e-11 Score=116.52 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=69.8
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCCHHHHhcceEEEccCCcccc
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 539 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~ 539 (637)
+...+|+.++|+||||||||||++.|++.++ |..|+ +||+++.-++.+.+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4456999999999999999999999999987 78888 799999999999999986 69999999
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHH
Q 006650 540 MDIKSNIMYGCPKDVKNEDIEWAAKQ 565 (637)
Q Consensus 540 gTI~eNI~~g~~~~~~de~v~~A~~~ 565 (637)
+++.+| .||. +.+.+.++++.
T Consensus 89 ~~~~~n-~YGt----~~~~v~~~l~~ 109 (197)
T 3ney_A 89 GSYQGN-MFGT----KFETVHQIHKQ 109 (197)
T ss_dssp EEETTE-EEEE----EHHHHHHHHHT
T ss_pred hhhhce-eccc----chhhHHHHHhc
Confidence 999999 5883 24556655554
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.00 E-value=6e-11 Score=115.25 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=89.4
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccH-HHHHhcC-
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI-KSNIMYG- 549 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI-~eNI~~g- 549 (637)
|+++++|++++|+||||||||||+++|+|+++ .+.++|.++........+..++|++|++.+|.... .+|+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57889999999999999999999999999974 68899988877665566888999999998886543 3343221
Q ss_pred ----CCCCCCHHHHHHHHHHc----------CHHHHHHcCCCCcccccC------------CC-CCC-hHHHHHHHHHHH
Q 006650 550 ----CPKDVKNEDIEWAAKQA----------YVHEFILSLPCGYETLVD------------DD-LLS-GGQKQRIAIARA 601 (637)
Q Consensus 550 ----~~~~~~de~v~~A~~~a----------~l~~fI~~lP~G~dT~vg------------e~-~LS-GGQkQRIaIARA 601 (637)
.......+++.++++.. ++..+....|+..-..+- ++ +.+ ...++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 00012335566655542 344455555554222221 11 222 456889998887
Q ss_pred Hc---CCCCEEEEeC
Q 006650 602 IL---RDPAILLLDE 613 (637)
Q Consensus 602 Ll---k~p~ILILDE 613 (637)
.. +.++.+|.++
T Consensus 157 ~~~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND 171 (205)
T ss_dssp HHTTGGGCSEEEECS
T ss_pred HHhcccCCCEEEECC
Confidence 65 3478887755
No 155
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.00 E-value=9.4e-10 Score=129.27 Aligned_cols=93 Identities=23% Similarity=0.332 Sum_probs=62.4
Q ss_pred cccccHHHHHhcCCCCCCCHHH--H-----HHHHHHcCHHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHHHHcCC-
Q 006650 537 LLQMDIKSNIMYGCPKDVKNED--I-----EWAAKQAYVHEFILSLPCGYETL-VDD--DLLSGGQKQRIAIARAILRD- 605 (637)
Q Consensus 537 LF~gTI~eNI~~g~~~~~~de~--v-----~~A~~~a~l~~fI~~lP~G~dT~-vge--~~LSGGQkQRIaIARALlk~- 605 (637)
+++.||.|++.|..+-..+.++ + .+..+. + +++..+ |++-. .+. ..|||||||||+||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 5678888888886322233321 1 111111 1 233332 44422 233 38999999999999999999
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 006650 606 -PAILLLDEATSALDSESEHYVKANTLDSLL 635 (637)
Q Consensus 606 -p~ILILDEaTSaLD~~tE~~I~~~il~~l~ 635 (637)
|++|||||||++||+..-..+.+.+ +.|.
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L-~~Lr 570 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETL-TRLR 570 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHH-HHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHH-HHHH
Confidence 5899999999999999999888874 4443
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=7.1e-11 Score=122.90 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=58.2
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCCHHHHhcceEEEccCCcccc-----ccHHH
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLLQ-----MDIKS 544 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF~-----gTI~e 544 (637)
+++.+|++++|+|+||+|||||+|.|.|+..|..|+|.+ +|++..... +.++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 457799999999999999999999999999999999999 888876532 222223899999998764 578 9
Q ss_pred HHh--cC-------------C-CCCCCHHHHHHHHHHcCHHHH
Q 006650 545 NIM--YG-------------C-PKDVKNEDIEWAAKQAYVHEF 571 (637)
Q Consensus 545 NI~--~g-------------~-~~~~~de~v~~A~~~a~l~~f 571 (637)
|+. |. | ..+.....+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 993 21 1 111234568888888877543
No 157
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.98 E-value=1.9e-13 Score=144.37 Aligned_cols=94 Identities=14% Similarity=0.241 Sum_probs=72.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCC-------CEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEECCEeCCC
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTD 518 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~G-------e~vAIVG~SGsGKSTL~~LL~r~y----~p~~G~I~idG~di~~ 518 (637)
++.++++..|.. ..+++++++.+++| +.++|+||+|+|||||++++++.. .|++|.+..+|.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 445556656642 35899999999987 899999999999999999999998 7788988887766543
Q ss_pred CCHHHHhcceEEEccCCccccccHHHHHh
Q 006650 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (637)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 547 (637)
+.....+..|.+++|...++. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 221112467999999887775 8888874
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.93 E-value=9e-11 Score=112.48 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=65.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
.+|++++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37999999999999999999999999874 445553 47778888888888875 57999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHH
Q 006650 545 NIMYGCPKDVKNEDIEWAAKQ 565 (637)
Q Consensus 545 NI~~g~~~~~~de~v~~A~~~ 565 (637)
| .||. +.+++.++++.
T Consensus 80 n-~yg~----~~~~i~~~l~~ 95 (180)
T 1kgd_A 80 A-MYGT----KLETIRKIHEQ 95 (180)
T ss_dssp E-EEEE----EHHHHHHHHHT
T ss_pred c-cccc----cHHHHHHHHHC
Confidence 9 6772 24556666653
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.91 E-value=3e-11 Score=120.51 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=53.5
Q ss_pred cEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--------
Q 006650 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 520 (637)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~-------- 520 (637)
.|+++|+...|.. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~~----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFAR----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEEE----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccCC----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 5889998765521 456667 899999999999999999999999999999999999884332
Q ss_pred HHHHhcceEEEccC
Q 006650 521 IRWLREKIGFVGQE 534 (637)
Q Consensus 521 ~~~lR~~I~~V~Qd 534 (637)
....+..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 22357889999986
No 160
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.91 E-value=3e-10 Score=108.45 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=32.9
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G 507 (637)
|+++++|+.++|+||+|+|||||++.+++.+.|.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999999999987766
No 161
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.90 E-value=2e-10 Score=112.21 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=65.8
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCC
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 552 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 552 (637)
=++++|++++|+|+|||||||++++|.+.++ .+.+++||+++|++ +|+.++. +
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~-~ 68 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK-N 68 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT-T
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc-c
Confidence 3688999999999999999999999999985 48999999999987 6777652 2
Q ss_pred CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 006650 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (637)
Q Consensus 553 ~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEa 614 (637)
...+.++.++++...+.+++.++.++. + .-.++.|.++ .++++++|+|=+
T Consensus 69 ~~~~~~~~~~~~~~~l~~~i~~~l~~~---~-~~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 69 GFLQYDVLEALNMEKMMSAISCWMESA---R-HSVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp SCBCCSSGGGBCHHHHHHHHHHHHHHH---T-TSSCCC-------------CCCCEEEEECT
T ss_pred CCChhHHHHHhHHHHHHHHHHHHHhCC---C-CCCcCCCeee--------cCCCCEEEEeeh
Confidence 222223333444444445544322111 0 1135555554 456788888543
No 162
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.85 E-value=5e-10 Score=108.37 Aligned_cols=141 Identities=21% Similarity=0.190 Sum_probs=79.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCC------CceEEECCEeCC----CCC-HHHHhcceEEEccCCccccccHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY-----EPS------DGQIYIDGFPLT----DLD-IRWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y-----~p~------~G~I~idG~di~----~i~-~~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
+++|+|++|||||||++.++|.. .|+ .|+|.++|.++. +.. .+.+|+......|+...+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~----- 81 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA----- 81 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE-----
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE-----
Confidence 68999999999999999999973 343 578999997652 222 233333333333332210
Q ss_pred HHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHc-CCCCccc-ccCCC-CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 006650 544 SNIMYGCPKDVKN-EDIEWAAKQAYVHEFILS-LPCGYET-LVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (637)
Q Consensus 544 eNI~~g~~~~~~d-e~v~~A~~~a~l~~fI~~-lP~G~dT-~vge~-~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD 619 (637)
|... ++++ ....++... + +.+.. .+.+.-. .++.. .|..-.......||++.++|+++++| |||+|
T Consensus 82 --i~v~---d~~~~~s~~~~~~~--~-~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~ 151 (199)
T 2f9l_A 82 --LLVY---DIAKHLTYENVERW--L-KELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALD 151 (199)
T ss_dssp --EEEE---ETTCHHHHHTHHHH--H-HHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred --EEEE---ECcCHHHHHHHHHH--H-HHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCC
Confidence 0000 1111 111111110 1 11111 1111111 12332 34322222356699999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhh
Q 006650 620 SESEHYVKANTLDSLL 635 (637)
Q Consensus 620 ~~tE~~I~~~il~~l~ 635 (637)
.++-..+.+.+.+.+.
T Consensus 152 ~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 152 STNVEEAFKNILTEIY 167 (199)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888877654
No 163
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.82 E-value=3.7e-11 Score=128.58 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=89.3
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 545 (637)
.+|+++|+++++|+.++|+||+|||||||+++|++.+ +|++..-+ ...+.++..+++++|+..+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 67776511 11123344588999987653 445
Q ss_pred HhcCCC--CCCC-HHHHHHHHHHcCHHHHHHc---------CCCCcccc-----cCC--CCCChHHHHHHHHHHHHcCCC
Q 006650 546 IMYGCP--KDVK-NEDIEWAAKQAYVHEFILS---------LPCGYETL-----VDD--DLLSGGQKQRIAIARAILRDP 606 (637)
Q Consensus 546 I~~g~~--~~~~-de~v~~A~~~a~l~~fI~~---------lP~G~dT~-----vge--~~LSGGQkQRIaIARALlk~p 606 (637)
+..... .+.. .+.+. ....+.+.+.. .|+-++.. +.+ ..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 554421 0110 01110 12234444431 12212111 112 378999999999998899999
Q ss_pred CEEE-EeCCCC
Q 006650 607 AILL-LDEATS 616 (637)
Q Consensus 607 ~ILI-LDEaTS 616 (637)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 898886
No 164
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.78 E-value=5.2e-09 Score=108.47 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=70.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 555 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 555 (637)
++|++++++|++||||||+++.|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998888 36777777773 333333332
Q ss_pred HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 006650 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKA 628 (637)
Q Consensus 556 de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~ 628 (637)
..++..+ +| -... ..++..|.+|+|+ ++|+++|+| |+++|...+..+.+
T Consensus 155 -----~~~~~~g-------l~----~~~~----~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 155 -----TYAELLQ-------AP----LEVC----YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp -----HHHTTTT-------CC----CCBC----SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHH
T ss_pred -----HHHHhcC-------CC----eEec----CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHH
Confidence 2222211 11 1111 1235567888875 999999999 99999877655544
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.78 E-value=1.8e-10 Score=131.05 Aligned_cols=154 Identities=13% Similarity=0.115 Sum_probs=100.8
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCCCCCHHHHhcceEEEccCCc--------
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-------- 536 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~~-------- 536 (637)
.+++++++.+++|+.+.|+||||+|||||++.|.++.++.. |.+.+++.+.... ...++++||...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999987 8999988776543 456888877541
Q ss_pred --------------cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 006650 537 --------------LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (637)
Q Consensus 537 --------------LF-~gTI~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARA 601 (637)
.| ..++.+|+..++. ......+... ......+++.... ++..- .+.+|+|++|++..++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~-~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDA-TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCT-TCSSCCEEEC-TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCHH
T ss_pred Hhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEc-CCCCHHhcCceEE--echhh-cCCccccccccccCcee
Confidence 01 2223333333211 0000000000 1112223332211 11100 13699999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006650 602 ILRDPAILLLDEATSALDSESEHYVKANT 630 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~tE~~I~~~i 630 (637)
...++.+|+|||... |+++....+.+.+
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~L 225 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAM 225 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHH
Confidence 999999999999988 7887776666654
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.69 E-value=2.2e-09 Score=104.23 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=52.1
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCC-----------cccccc
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----------QLLQMD 541 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~-----------~LF~gT 541 (637)
++|++|+.++|+|+|||||||++++|.+++.|+.| +.+ +...++-.. ..+..+++++|++ .+++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999987666 222 222222211 1223467777765 444555
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHH
Q 006650 542 IKSNIMYGCPKDVKNEDIEWAAK 564 (637)
Q Consensus 542 I~eNI~~g~~~~~~de~v~~A~~ 564 (637)
+++| .||. ..+++.++++
T Consensus 78 ~~~~-~~g~----~~~~i~~~l~ 95 (207)
T 2j41_A 78 YVGN-YYGT----PVQYVKDTMD 95 (207)
T ss_dssp ETTE-EEEE----EHHHHHHHHH
T ss_pred ECCe-ecCC----CHHHHHHHHH
Confidence 5555 3441 2455665554
No 167
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.65 E-value=7.4e-09 Score=118.95 Aligned_cols=131 Identities=21% Similarity=0.182 Sum_probs=95.6
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcC
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 549 (637)
|+++++|++++|+|++|+|||||++.|++...+ ..|+| .+|.++.+++..+.++.|++.+|...++.++++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 78999 899999999999999999999999999999999998532
Q ss_pred CCCCCC-HHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE---eCC
Q 006650 550 CPKDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL---DEA 614 (637)
Q Consensus 550 ~~~~~~-de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILIL---DEa 614 (637)
+...+ ..++..+++.+++.-++-+..+ +++...++.+..++. .+-|.|+++ |.+
T Consensus 82 -pG~~~f~~~~~~~l~~ad~~ilVvD~~~---------g~~~qt~~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 82 -PGYGDFVGEIRGALEAADAALVAVSAEA---------GVQVGTERAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -CCSGGGHHHHHHHHHHCSEEEEEEETTT---------CSCHHHHHHHHHHHH-TTCCEEEEEECGGGC
T ss_pred -CCccchHHHHHHHHhhcCcEEEEEcCCc---------ccchhHHHHHHHHHH-ccCCEEEEecCCchh
Confidence 21111 2567777776665433333222 355556666666665 344555553 665
No 168
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.65 E-value=1.9e-09 Score=120.85 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=64.2
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eE-EECCEeCCC-------CCH---HHHhcceEEEccCCccccc
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QI-YIDGFPLTD-------LDI---RWLREKIGFVGQEPQLLQM 540 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I-~idG~di~~-------i~~---~~lR~~I~~V~Qd~~LF~g 540 (637)
..+++|++++|+|+||||||||+++|++.+.|++| +| ++||.++.+ ++. ..+++.+++|.|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35889999999999999999999999999999987 78 499977643 232 23556789999972
Q ss_pred cHHHHHhcCCC---CCCCHHHHHHHHHHcC
Q 006650 541 DIKSNIMYGCP---KDVKNEDIEWAAKQAY 567 (637)
Q Consensus 541 TI~eNI~~g~~---~~~~de~v~~A~~~a~ 567 (637)
+..+|+.+... .....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 45667665421 1122345555666544
No 169
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.64 E-value=2.4e-08 Score=106.67 Aligned_cols=46 Identities=30% Similarity=0.399 Sum_probs=42.2
Q ss_pred CCChHHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRI------aIARALlk~-p~ILILDEaTSaLD~~tE~~I~~~il~ 632 (637)
.|||||+||+ |+|||+.++ |++|||||||++||+++...+.+.+.+
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 332 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 7999999987 678999999 999999999999999999999987643
No 170
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.64 E-value=2.4e-09 Score=108.30 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=35.6
Q ss_pred cEEEEEE-EEECCCCCCcCcccceeEEeeC---CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 449 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 449 ~I~f~nV-sF~Y~~~~~~~vL~~isl~I~~---Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++++|| +|+|.+ +.++|+|+||+|++ |++++|+|+|||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5999999 999932 24699999999999 9999999999999999999999854
No 171
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.64 E-value=4.5e-09 Score=100.20 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE--eCCCCC----HHHHhcceEEEccCCc------
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLD----IRWLREKIGFVGQEPQ------ 536 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~--di~~i~----~~~lR~~I~~V~Qd~~------ 536 (637)
+++++++.+| .++|+|+||||||||++.|.++..+..|...-++. ++-... ....+..|.++.|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887776543332 111111 0124567999999852
Q ss_pred ----cccccHHHH----HhcCCCCCCCHHHHHHHHHHcCHH
Q 006650 537 ----LLQMDIKSN----IMYGCPKDVKNEDIEWAAKQAYVH 569 (637)
Q Consensus 537 ----LF~gTI~eN----I~~g~~~~~~de~v~~A~~~a~l~ 569 (637)
.+..++..+ +... ....+.+++.+.++..+++
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~-g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLN-GRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEET-TEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEEC-CeEcCHHHHHHHHHHcCCC
Confidence 333333221 1111 1234667777777776653
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.61 E-value=1.1e-09 Score=106.41 Aligned_cols=74 Identities=28% Similarity=0.418 Sum_probs=53.0
Q ss_pred EEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE--EECCEeCCCCCHHHHhcceEE
Q 006650 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I--~idG~di~~i~~~~lR~~I~~ 530 (637)
+|++.++. .....+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.++.. .+++.+++
T Consensus 3 ~~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~----~~~~~~~~ 74 (200)
T 3uie_A 3 TNIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH----GLNRDLSF 74 (200)
T ss_dssp -------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT----TTTTTCCS
T ss_pred CCCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh----HhhcccCc
Confidence 35565543 2347788899999999999999999999999999999997 78998 999987754 23334444
Q ss_pred EccC
Q 006650 531 VGQE 534 (637)
Q Consensus 531 V~Qd 534 (637)
.+|+
T Consensus 75 ~~~~ 78 (200)
T 3uie_A 75 KAED 78 (200)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 4444
No 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.61 E-value=8.2e-09 Score=110.10 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCCceEEECCEeCCCCCHHHHhcceEEEccCCcc----ccccHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL----LQMDIKS 544 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~-----------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L----F~gTI~e 544 (637)
+++|||++|||||||++.|+|... |+.|.|.++|.++. +....|++.|.|+- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~- 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLS- 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHH-
Confidence 499999999999999999999775 67899999997763 33466777665432 333322
Q ss_pred HHhcCC----CCCCCHHH--HHHHHHHcCHHHHHHcCC-CCccc-ccCC--CCCChHHHHHHHHH----HHH-cCCCCEE
Q 006650 545 NIMYGC----PKDVKNED--IEWAAKQAYVHEFILSLP-CGYET-LVDD--DLLSGGQKQRIAIA----RAI-LRDPAIL 609 (637)
Q Consensus 545 NI~~g~----~~~~~de~--v~~A~~~a~l~~fI~~lP-~G~dT-~vge--~~LSGGQkQRIaIA----RAL-lk~p~IL 609 (637)
.+.-.+ --++++.. ..+..+. ..+.+..+. .+.-. .|+. ..+|+|++||+.++ |++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222110 01222211 2111111 122232221 11111 2233 26788899988877 777 555565
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh
Q 006650 610 LLDEATSALDSESEHYVKANTLDSL 634 (637)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~il~~l 634 (637)
++|||+|.++-..+.+.|.+.+
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999988888876654
No 174
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=1.6e-08 Score=98.23 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=25.0
Q ss_pred EECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 457 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 457 F~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+|+.++..+.++||||++++|+.++|+|+|||||||+++.|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 4 HHHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3577666678999999999999999999999999999999999866
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=8.3e-09 Score=101.11 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=56.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCEeCCCCCHHHHhcceEEEccCCccccccHHH
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 544 (637)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|.++..++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 344333 457777777888888765 6788888888777
Q ss_pred HHhcC
Q 006650 545 NIMYG 549 (637)
Q Consensus 545 NI~~g 549 (637)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 6 466
No 176
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.56 E-value=8e-09 Score=100.38 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=52.6
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-HhcceEEEccCCccccc-cHHHHHhc
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKIGFVGQEPQLLQM-DIKSNIMY 548 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~I~~V~Qd~~LF~g-TI~eNI~~ 548 (637)
.++-++|+.++|+|+|||||||++++|.+.+ |.+.+||.++.. ... .+..+++++|++.++.. ++.+|+..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 4677899999999999999999999999987 999999988753 222 23357999998776643 66777643
No 177
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.53 E-value=1.2e-09 Score=120.99 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=81.3
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc---c---
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM---D--- 541 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g---T--- 541 (637)
.+++++.+|..+.|+|.|||||||+++.|.. +|.++.|++.+.+.|.+......+.. =||++.. .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4778899999999999999999999998876 77778899988888877655444432 1333210 0
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHH----------HHHHHHcCCCC-EEE
Q 006650 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI----------AIARAILRDPA-ILL 610 (637)
Q Consensus 542 I~eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRI----------aIARALlk~p~-ILI 610 (637)
..+++..- . ...++-.+.++.+++.++- +|+..+. ..+||||+||. ++||++-+.|. +++
T Consensus 232 a~~~L~~~-~--~EmerR~~ll~~~Gv~~i~-----~yn~~~~-~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 232 AANALRWC-V--NEMERRYKLMSALGVRNLA-----GYNEKIA-EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHH-H--HHHHHHHHHHHHTTCSSHH-----HHHHHHH-HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHH-H--HHHHHHHHHHHHcCCccHH-----HHHHHHH-HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 11111110 0 0001111222222221110 1111111 13688888763 46788888898 789
Q ss_pred EeCCCCCCCHH
Q 006650 611 LDEATSALDSE 621 (637)
Q Consensus 611 LDEaTSaLD~~ 621 (637)
+||+++-+|..
T Consensus 303 IDE~~~ll~~~ 313 (512)
T 2ius_A 303 VDEFADLMMTV 313 (512)
T ss_dssp EETHHHHHHHH
T ss_pred EeCHHHHHhhh
Confidence 99999999843
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.52 E-value=2e-08 Score=105.21 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=63.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHH-----hcceEEE-ccCCc
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL-----REKIGFV-GQEPQ 536 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~----~~l-----R~~I~~V-~Qd~~ 536 (637)
+++++||++++|++++++|++|+||||++..|++.+.+.+|+|++.+.|...... ..| +..+.++ +|+..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 4578889999999999999999999999999999999999999999888765431 344 6679999 77654
Q ss_pred cccc-cHHHHHh
Q 006650 537 LLQM-DIKSNIM 547 (637)
Q Consensus 537 LF~g-TI~eNI~ 547 (637)
.... ++.+|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4432 3455554
No 179
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.49 E-value=2.5e-09 Score=118.47 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=95.6
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
+++++...|.+ ..+++++++++++| +.|+||+|+|||||++.|.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 34555555532 24899999999999 99999999999999999999875 7899999998876655566677888
Q ss_pred EccCCc-cc-cccHHHHH-hcCCCCC----CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 006650 531 VGQEPQ-LL-QMDIKSNI-MYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (637)
Q Consensus 531 V~Qd~~-LF-~gTI~eNI-~~g~~~~----~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALl 603 (637)
++|+.. .+ .-.+.|+| .++.... ...++..+.+. .++.. |||||+|+..|++|..
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~~-------------Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLVE-------------MDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHHH-------------GGGCCSSCCCEEEECC
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHHH-------------hcccccCccEEEEEec
Confidence 888875 23 23456777 4542111 11233322221 22222 5677777777777777
Q ss_pred CCCCEEEEeCCCCC
Q 006650 604 RDPAILLLDEATSA 617 (637)
Q Consensus 604 k~p~ILILDEaTSa 617 (637)
.+|++ ||||.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 77776 7777653
No 180
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.48 E-value=1.5e-08 Score=97.21 Aligned_cols=115 Identities=20% Similarity=0.160 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccc-cccHHHHHhcCCCCCCCH
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN 556 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~d 556 (637)
|+.++|+|+|||||||+++.|++ |.+|.|.+||.++.+. ..+++++|+...+ ..|+.+|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999997 6789999998665331 2467777765332 34666666432
Q ss_pred HHHHHHHHHcCHHHHHHcCCCCc----ccccCC------CCC--ChHHHHHHHHHH------HHcCCCCEEEEeCCCCCC
Q 006650 557 EDIEWAAKQAYVHEFILSLPCGY----ETLVDD------DLL--SGGQKQRIAIAR------AILRDPAILLLDEATSAL 618 (637)
Q Consensus 557 e~v~~A~~~a~l~~fI~~lP~G~----dT~vge------~~L--SGGQkQRIaIAR------ALlk~p~ILILDEaTSaL 618 (637)
++ .+.. .|. |...+. ..+ |+|++||+.++. +++++|+...+|+ ++
T Consensus 66 ------~~-----~~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~l 128 (189)
T 2bdt_A 66 ------TV-----NFLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QM 128 (189)
T ss_dssp ------HH-----HHHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------
T ss_pred ------HH-----HHHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cC
Confidence 00 0111 111 111111 124 778777777777 7777777777773 67
Q ss_pred CHHHHHH
Q 006650 619 DSESEHY 625 (637)
Q Consensus 619 D~~tE~~ 625 (637)
|++....
T Consensus 129 d~~~~~~ 135 (189)
T 2bdt_A 129 GERCLEL 135 (189)
T ss_dssp CGGGGHH
T ss_pred CHHHHHH
Confidence 7765544
No 181
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.46 E-value=1.8e-08 Score=106.84 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=50.8
Q ss_pred cCCCcEEEEEEEEECCCCCCcCccc--------------ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 445 RLMGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~--------------~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
...+.|+|+||+|.||.. ..+|+ |+++.|.+|++++|||+||+|||||+++|.|+.
T Consensus 129 ~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 346789999999999964 46899 999999999999999999999999999999985
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.39 E-value=6.4e-08 Score=102.92 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=36.4
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEECCE
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGF 514 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p~~G~I~idG~ 514 (637)
.+|+++++++| .|++||++|||||||++.|.| +.++.+|.+.-...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 58999999999 999999999999999999999 77888887754443
No 183
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.34 E-value=2e-08 Score=99.99 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=50.6
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC------CHHH----HhcceEEEccCCcccc
Q 006650 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRW----LREKIGFVGQEPQLLQ 539 (637)
Q Consensus 472 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i------~~~~----lR~~I~~V~Qd~~LF~ 539 (637)
+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|...+ .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345689999999999999999999999998 79999999876432 1211 2467899999887764
No 184
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.22 E-value=1.6e-06 Score=91.87 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=30.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce-EEECC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDG 513 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~-I~idG 513 (637)
-+++|+.+.|.|++|||||||+.-++.-.....|. ++++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 58899999999999999999987776544433443 44444
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.20 E-value=8.8e-07 Score=97.13 Aligned_cols=133 Identities=13% Similarity=0.180 Sum_probs=85.7
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCCHHHHhcce-EEEccCCccccccHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIK 543 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I~idG~di~~i~~~~lR~~I-~~V~Qd~~LF~gTI~ 543 (637)
+.|++++.-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+. +.+.+.+++++ +.... -. .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~------~~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGN------IN-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHT------CC-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcC------CC-H
Confidence 468888878999999999999999999999998887766545 5666442 34555555543 11110 00 1
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCH
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS 620 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALl--k~p~ILILDEaTSaLD~ 620 (637)
+++.-| ..++++...+.+.+ +.+...| -.+.+ ..+|++|.+ +.||++. ++|+++|+|+++.-.+.
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMAM---GSLSNAG----IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHHH---HHHHSSC----EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC---CCCHHHHHHHHHHH---HHHhcCC----EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 223334 34566554443332 2233322 22333 479999876 6778877 57999999999998753
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.20 E-value=2.8e-07 Score=91.55 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=36.2
Q ss_pred Ccccce-eEEeeCCCEEEEEcCCCCcHHHHH-HHHhcCCCCCCceEEECC
Q 006650 466 PILNHV-CLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 466 ~vL~~i-sl~I~~Ge~vAIVG~SGsGKSTL~-~LL~r~y~p~~G~I~idG 513 (637)
+.|+++ .--+++|+.++|+|++|||||||+ +++.+..+...+.+++++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 356666 557999999999999999999995 555566555555666665
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.14 E-value=6.5e-07 Score=93.58 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=75.7
Q ss_pred CcccceeEEeeCCC------EEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEECCEeCCCCCHHHHhcceEEEccCCcc
Q 006650 466 PILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (637)
Q Consensus 466 ~vL~~isl~I~~Ge------~vAIVG~SGsGKSTL~~LL~r~y~--p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (637)
..|++++..+.+++ ++||+|+|||||||++++|.++++ |++|+ ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 47888888888877 999999999999999999999987 44444 4556666665
Q ss_pred ccccHHHHH----hcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeC
Q 006650 538 LQMDIKSNI----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 613 (637)
Q Consensus 538 F~gTI~eNI----~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDE 613 (637)
++....+.. .+|.+...+.+.+. +++..+..|-++.. --..|-+..+|+..+...+.+|+|+|+|.
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~---------~~L~~L~~g~~~v~-~P~yd~~~~~r~~~~~~~v~~~dIVIvEG 204 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLL---------RVLNAIKSGQRNVR-IPVYSHHYYDIVRGQYEIVDQPDIVILEG 204 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHH---------HHHHHHHTTCSSEE-EEEEETTTTEEEEEEEEEECSCSEEEEEC
T ss_pred cchhhhhhHHHHhhccCcccccHHHHH---------HHHHhhhccccccc-cchhhhhccccccCceeeccCCCEEEEEc
Confidence 554444332 23433223333333 33334434432110 00222333344433345567899999988
Q ss_pred CCCCCCH
Q 006650 614 ATSALDS 620 (637)
Q Consensus 614 aTSaLD~ 620 (637)
+-.-.|.
T Consensus 205 i~lL~~~ 211 (321)
T 3tqc_A 205 LNILQTG 211 (321)
T ss_dssp TTTTCCC
T ss_pred ccccccc
Confidence 7665544
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.12 E-value=5e-07 Score=85.28 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=43.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhc-ceEEEccCCcc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQEPQL 537 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~-~I~~V~Qd~~L 537 (637)
++|+.++|+|+|||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+|++.|+...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcccc
Confidence 479999999999999999999999876 899999877653 222333 46777776433
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.10 E-value=6.6e-07 Score=86.89 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=41.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~ 521 (637)
..++|++++|+|+|||||||+++.|.+++++.+|.|.+.+.|......
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 367899999999999999999999999999999999887777655443
No 190
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.06 E-value=1.7e-06 Score=93.75 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=91.3
Q ss_pred EEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhcce
Q 006650 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 528 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~-lR~~I 528 (637)
+..++++..|.+. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|...-...+ ++..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 4456677778532 1 678887 99999999999999999999999999999999999888876533221 2210
Q ss_pred EEEccCCccccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHcC-CCCcccccCC--CCCC---hHHHHHHHHHHH
Q 006650 529 GFVGQEPQLLQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSL-PCGYETLVDD--DLLS---GGQKQRIAIARA 601 (637)
Q Consensus 529 ~~V~Qd~~LF~gTI~eNI~~g-~~~~~~de~v~~A~~~a~l~~fI~~l-P~G~dT~vge--~~LS---GGQkQRIaIARA 601 (637)
.=+.|+-+. ..+..+..++. .+.+..+ .++||..+=+ ..++ +...+..+++|+
T Consensus 149 ------------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp ------------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 001233221 01123344441 1233333 2678876633 2332 345677788888
Q ss_pred HcCCCCEEEEeCCCCCCCHHH
Q 006650 602 ILRDPAILLLDEATSALDSES 622 (637)
Q Consensus 602 Llk~p~ILILDEaTSaLD~~t 622 (637)
+.-++-++++| ++++.|...
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~ 228 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALS 228 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHH
T ss_pred cCCceEEEEEe-ccchHHHHH
Confidence 87777788888 455655543
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.01 E-value=3.8e-06 Score=92.35 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=29.9
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
..++++++++++| +.|+||+|+|||||++.+.+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 3678888888888 89999999999999999998
No 192
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=9.2e-07 Score=83.89 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=35.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTD 518 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di~~ 518 (637)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 67 77788766543
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.87 E-value=4.9e-06 Score=97.08 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKANTL 631 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILDEaTS-aLD~~tE~~I~~~il 631 (637)
-+|+|+.+|..++++++++++++|+|||.. +||.+.-..+.+.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 478999999999999999999999999997 899876655555543
No 194
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.82 E-value=1.3e-06 Score=87.26 Aligned_cols=71 Identities=27% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceE--------EECCEeCCCCC-HHHHhcceEEEc------cCCccc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQI--------YIDGFPLTDLD-IRWLREKIGFVG------QEPQLL 538 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~---r~y~p~~G~I--------~idG~di~~i~-~~~lR~~I~~V~------Qd~~LF 538 (637)
+.-+++|+|||||||||+++.|. |+.-.+.|.+ .-+|.++.+.. ...+-+.+.++. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 5555677776 34677776653 456667777776 677888
Q ss_pred cccHHHHHh
Q 006650 539 QMDIKSNIM 547 (637)
Q Consensus 539 ~gTI~eNI~ 547 (637)
..+|.+||+
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 888888775
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.78 E-value=7.5e-06 Score=86.11 Aligned_cols=103 Identities=13% Similarity=0.174 Sum_probs=69.8
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHH
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 546 (637)
-|+.+.--++||+.+.|.|++|+||||++.-++.-.....+.| .|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeC-------------
Confidence 4666665799999999999999999999977765433222333 33221
Q ss_pred hcCCCCCCCHHHHHH----HHHHcCHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 006650 547 MYGCPKDVKNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (637)
Q Consensus 547 ~~g~~~~~~de~v~~----A~~~a~l~~fI~~lP~G~dT~vge~~LSGGQkQRIaIARALlk~p~ILILDEaTSaLD 619 (637)
+.+.+++.. +.....++++.. +.||++++||++.|...+.++++.|.|+|+.++|
T Consensus 83 ------Ems~~ql~~Rlls~~~~v~~~~l~~------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSDLTSINMHDLES------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHHHHCCCHHHHHH------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHHhhCCCHHHHhc------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 123344322 222233333321 3699999999999999999999999999876654
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.74 E-value=4.4e-06 Score=93.67 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=51.3
Q ss_pred EEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEE
Q 006650 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (637)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (637)
-+++|..+|.. ..+++++++++ +|+.+.|+||||+|||||++.|.+...+..|+|.++|.+-..--....++.+|.
T Consensus 85 G~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 85 GLEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp SCHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred cHHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence 35566666632 24788888888 899999999999999999999999999999999998854322222344566787
Q ss_pred EccCC
Q 006650 531 VGQEP 535 (637)
Q Consensus 531 V~Qd~ 535 (637)
++|..
T Consensus 161 ~~~~~ 165 (543)
T 3m6a_A 161 MPGRI 165 (543)
T ss_dssp ---CH
T ss_pred CchHH
Confidence 77654
No 197
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.74 E-value=6.8e-06 Score=79.17 Aligned_cols=60 Identities=22% Similarity=0.437 Sum_probs=40.6
Q ss_pred EEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc----CCC----CCCceEEECCEeCC
Q 006650 455 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYE----PSDGQIYIDGFPLT 517 (637)
Q Consensus 455 VsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r----~y~----p~~G~I~idG~di~ 517 (637)
.+|+||+- ..+++++|++.+++ +++++|++|+|||||++-+.+ .|. ++.+.+.++|.++.
T Consensus 5 ~~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 5 FDWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp ----------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 35678764 36899999998887 589999999999999999986 333 35577888876543
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.74 E-value=1.6e-05 Score=83.13 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=30.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcC-CCC------CCceEEECC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL-YEP------SDGQIYIDG 513 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~-y~p------~~G~I~idG 513 (637)
-+++|+.+.|.|++|||||||+.-++.- ..| ..+.++++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 5899999999999999999999777643 344 334455554
No 199
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.72 E-value=8.3e-06 Score=78.38 Aligned_cols=82 Identities=22% Similarity=0.159 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC-CCC-H--HHHhcceEEEccCCccccccHHHHHhcCCCCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLD-I--RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~-~i~-~--~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 553 (637)
..+++|+|++||||||+.++|.+. |-..+|.-++. +.. . +.+++.. |+.+. +|++ ||..++ ...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~-~~~ 75 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALA-RLV 75 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHH-HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHH-HHH
Confidence 457999999999999999999996 77777754331 110 0 2233322 55444 6776 565554 222
Q ss_pred CCHHHHHHHHHHcCHHHHH
Q 006650 554 VKNEDIEWAAKQAYVHEFI 572 (637)
Q Consensus 554 ~~de~v~~A~~~a~l~~fI 572 (637)
.++++....++. ..+.++
T Consensus 76 ~~~~~~~~~l~~-~~~~~i 93 (203)
T 1uf9_A 76 FSDPERLKALEA-VVHPEV 93 (203)
T ss_dssp TTSHHHHHHHHH-HHHHHH
T ss_pred hCCHHHHHHHHH-HhChHH
Confidence 344555555542 344444
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.71 E-value=4e-06 Score=81.88 Aligned_cols=45 Identities=27% Similarity=0.256 Sum_probs=39.8
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCC
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLT 517 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di~ 517 (637)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45789999999999999999999999999998889 8999875543
No 201
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.71 E-value=1.9e-05 Score=84.66 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=38.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc------------CCCCCCceEEECCEe
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFP 515 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r------------~y~p~~G~I~idG~d 515 (637)
++++|.+++|||++|+|||||++.|+| ..+|+.|.|.++|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 568999999999999999999999999 678999999998843
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.70 E-value=4.4e-05 Score=82.79 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di 516 (637)
++.+++++|++||||||++.-|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 6899999999999999999999999999999998877664
No 203
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.70 E-value=2.7e-05 Score=82.48 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=36.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHH
Q 006650 587 LLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKANTLD 632 (637)
Q Consensus 587 ~LSGGQkQRIaIARALlk~p~ILILD-EaTSaLD~~tE~~I~~~il~ 632 (637)
.+|+||+|++. |.+...++-++++| ++++++|.+....+.+.+.+
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 57999999887 66667788899999 99999999887777666544
No 204
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.69 E-value=1.3e-05 Score=75.11 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
.|+.++|+|+|||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 5789999999999999999999998754 66765
No 205
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.69 E-value=1.5e-05 Score=86.89 Aligned_cols=70 Identities=30% Similarity=0.347 Sum_probs=45.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC------------CCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccc-cHHHH
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSN 545 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~eN 545 (637)
-++||||+||+|||||++.|+|.. +|.+|.+.++|.++.-+|..-+|+..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 479999999999999999999985 37889999999988777766677777777777666643 23455
Q ss_pred Hhc
Q 006650 546 IMY 548 (637)
Q Consensus 546 I~~ 548 (637)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 206
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.68 E-value=6.1e-06 Score=80.10 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=39.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceE----------EECCEeCCCCCHHHHhcc
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQI----------YIDGFPLTDLDIRWLREK 527 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I----------~idG~di~~i~~~~lR~~ 527 (637)
...+|..++|+|+|||||||+++.|...++. ..+.+ .+||.+..-++.+.+++.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 4578999999999999999999999987742 11212 246766666777776654
No 207
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.66 E-value=1.2e-05 Score=79.98 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=32.9
Q ss_pred ccceeEEee---CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 006650 468 LNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (637)
Q Consensus 468 L~~isl~I~---~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 512 (637)
|.++|++++ +|..++|.|++||||||++++|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 9999999999999999999999999988 7777643
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.61 E-value=6.8e-06 Score=86.64 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=46.5
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 517 (637)
.+++++++++++|.+++|+|++|+||||+++.|++.+.+.+|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4789999999999999999999999999999999999888888887666654
No 209
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.60 E-value=3.1e-06 Score=81.37 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=41.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc------CCCCCCceEEECCE--eCCCCCH--------HHHhcceEEEccCCccccccHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR------LYEPSDGQIYIDGF--PLTDLDI--------RWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r------~y~p~~G~I~idG~--di~~i~~--------~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
.++|+|++||||||++++|.+ +.+|..|...++.. +-...+. +.+++....+.|+..++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 44555454333211 1000110 0123344567788899999999
Q ss_pred HHHhcC
Q 006650 544 SNIMYG 549 (637)
Q Consensus 544 eNI~~g 549 (637)
+|+.+.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 988764
No 210
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.55 E-value=5.4e-05 Score=77.49 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 006650 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSE 621 (637)
Q Consensus 589 SGGQkQRIaIARALlk~p~ILILDEaTSaLD~~ 621 (637)
++++++|-.+++|...+|.+|++||+.+-++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 129 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSER 129 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhcccc
Confidence 468888888999988999999999998877643
No 211
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.50 E-value=5.9e-05 Score=71.90 Aligned_cols=50 Identities=22% Similarity=0.427 Sum_probs=30.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc----CCCC----CCceEEECCEeCC
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP----SDGQIYIDGFPLT 517 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r----~y~p----~~G~I~idG~di~ 517 (637)
+++++|++.++. +++++|++|+|||||++-+.+ -|.| +.+.+.++|..+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~ 70 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 70 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence 789999998877 889999999999999999987 3434 3567777775443
No 212
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.50 E-value=3.5e-05 Score=79.74 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE-CCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 555 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 555 (637)
++.++||||++|+|||||++.|.|.- +.+ .+.+- ...++..++++|+.+- +.+-+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~-----tTr~~~~gi~~~~~~~--------i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ-----TTRHRIVGIHTEGAYQ--------AIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS-----CCSSCEEEEEEETTEE--------EEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC-----cceeeEEEEEEECCee--------EEEEECcCCC
Confidence 44489999999999999999999863 222 11111 1124557788877541 1121111221
Q ss_pred HHHHHHHHHHcCHHHHHHcCCCC---cccc---cCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH
Q 006650 556 NEDIEWAAKQAYVHEFILSLPCG---YETL---VDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES 622 (637)
Q Consensus 556 de~v~~A~~~a~l~~fI~~lP~G---~dT~---vge~~LSGGQkQRIaIARALl--k~p~ILILDEaTSaLD~~t 622 (637)
. +-...+. .++....... .|.. +....+|+|++ .+++++- +.|.++++ +-+|...
T Consensus 68 ~-~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~ 130 (301)
T 1ega_A 68 M-EEKRAIN----RLMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQ 130 (301)
T ss_dssp H-HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCC
T ss_pred c-cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCc
Confidence 1 1111111 1222222222 2222 12224999986 5677776 67888888 5777665
No 213
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.45 E-value=2.9e-05 Score=82.13 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=37.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 518 (637)
++|.+++|+|++|||||||++.|.|.+.+++|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4688999999999999999999999999999999988776543
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.42 E-value=8.1e-05 Score=69.81 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 215
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.37 E-value=5.6e-05 Score=79.98 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=46.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCEeCCCCCHHHHhcceEEEccCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEP 535 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (637)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 489999999999999999999999999888888865 77664332 2 23566788877654
No 216
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=72.16 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=69.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccc-cccHHHHHhcCCCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPK 552 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~ 552 (637)
.+..|+.+.++|+|||||||++.+.+.-.....|. ...++++.|.|... ..++.+|+.-....
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34579999999999999999887664221111111 23566777777643 45677777532111
Q ss_pred CCCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC---------CCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHH
Q 006650 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD---------LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSES 622 (637)
Q Consensus 553 ~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~---------~LSGGQkQRIaIARALlk~p~ILILDEaTS-aLD~~t 622 (637)
... ..-|+....... =-+.|.-.+.. +.-+++-+++|+|||-. ++|...
T Consensus 136 ~~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EPG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CTT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHH
T ss_pred ccC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHH
Confidence 110 001221111100 02446655553 44689999999999976 577766
Q ss_pred HHHHHHHHHH
Q 006650 623 EHYVKANTLD 632 (637)
Q Consensus 623 E~~I~~~il~ 632 (637)
...+.+.+++
T Consensus 195 ~~~~l~~i~~ 204 (235)
T 3llm_A 195 LLVVLRDVVQ 204 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6444444443
No 217
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.28 E-value=0.00011 Score=70.07 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.8
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.27 E-value=3.3e-05 Score=79.82 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=51.2
Q ss_pred EEEEEEEEECCCCCCcCcccc-eeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 450 VQFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~-isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
+..+++...|.+.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|.+.-
T Consensus 75 ~~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 44556666665321 45 778776 999999999999999999999999999999999988777543
No 219
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.00011 Score=77.44 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=25.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999877763
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=1.4e-05 Score=83.98 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=53.2
Q ss_pred CcccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC-CCHHHHhcceEEEcc
Q 006650 466 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLREKIGFVGQ 533 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~--vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-i~~~~lR~~I~~V~Q 533 (637)
.++++++..|+.|+. +.+.||+|+||||+++.+++...+..|.+.+.+.+..+ ...+.+|+.+..++|
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 589999999999998 99999999999999999999987777766555555443 345666666654444
No 221
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.18 E-value=8.9e-05 Score=74.48 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=35.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 517 (637)
..++|..+.|+|++||||||+++.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 466788999999999999999999998875 367888885543
No 222
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00013 Score=69.38 Aligned_cols=42 Identities=36% Similarity=0.441 Sum_probs=35.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCEe
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFP 515 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-~idG~d 515 (637)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 346899999999999999999999999988877776 566533
No 223
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.14 E-value=9.8e-05 Score=71.14 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di 516 (637)
...++|+|++||||||+++.|.+.+ |.+.+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5789999999999999999998876 5667766444
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.13 E-value=0.0002 Score=74.46 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.9
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
+.|+++.--+++|+.+.|.|++|+||||++.-++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45777776699999999999999999999876664
No 225
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00018 Score=69.49 Aligned_cols=29 Identities=41% Similarity=0.654 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
+++|+|++||||||++++|.++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6999999999999999999983 6666765
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.10 E-value=0.0016 Score=60.79 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 512 (637)
..+.|+|++||||||+++.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999972 12555554
No 227
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.09 E-value=4.3e-05 Score=81.16 Aligned_cols=59 Identities=27% Similarity=0.256 Sum_probs=37.0
Q ss_pred CCCcEEEEEEEEECCCCCCcCcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
..+.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|.+...+..|.+..++
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3467999999999963 35899999976 99999999999999999887666555544433
No 228
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.06 E-value=0.0014 Score=69.03 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=26.2
Q ss_pred eCCC--EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 006650 476 EANE--VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (637)
Q Consensus 476 ~~Ge--~vAIVG~SGsGKSTL~~LL~r~y~p~ 505 (637)
++|. .+.|+||+|+||||+++.+.+...+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 3456 89999999999999999999988765
No 229
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.05 E-value=0.00034 Score=64.51 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=25.9
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-cCCC
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE 503 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-r~y~ 503 (637)
++.++++.+| ..+|+||+|||||||+..|. .+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445566655 89999999999999999886 3433
No 230
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.99 E-value=0.00057 Score=63.22 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=7.8e-05 Score=74.73 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=34.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i 519 (637)
.++++++..++| +.|+||+|+||||+++.+.+.+... -+.+++.++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~ 84 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEM 84 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHH
Confidence 455566666655 9999999999999999999987532 588888777543
No 232
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.95 E-value=0.00028 Score=66.99 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPL 516 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di 516 (637)
-..++|+|+||||||||++.|.+.+.+. -|.|..++++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 3689999999999999999999876543 37888877653
No 233
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.95 E-value=0.00035 Score=74.76 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=35.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEECCE
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF 514 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~-----------y~p~~G~I~idG~ 514 (637)
.+..|.+++|||++|+|||||++.|.|. .+|+.|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678999999999999999999999998 7888999888764
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.94 E-value=7.2e-05 Score=87.64 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=49.6
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCC
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (637)
+.+++|+.+.|+||||||||||++.|++.+.+. -|.++|.++.........+++..+.|++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHH
Confidence 468999999999999999999999999998654 4888887776655556666777777765
No 235
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.00044 Score=64.95 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEECCEe
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGFP 515 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~-----------y~p~~G~I~idG~d 515 (637)
-+++++|++|+|||||++.+.+- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999983 23445666666644
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.86 E-value=0.00054 Score=65.85 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.85 E-value=0.00033 Score=67.22 Aligned_cols=47 Identities=30% Similarity=0.525 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------------CCCCceEEECCEeCCCCCHHHHhcce
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY-------------EPSDGQIYIDGFPLTDLDIRWLREKI 528 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y-------------~p~~G~I~idG~di~~i~~~~lR~~I 528 (637)
-+.|+||||||||||++-|..-+ +|-.|+ .||+|..-++.+...+.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i 62 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH
Confidence 37899999999999998776433 345666 489998888888877654
No 238
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00099 Score=62.98 Aligned_cols=37 Identities=41% Similarity=0.560 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHH-HHhcC----CCCCCc----eEEECCEeC
Q 006650 480 VVAIVGLSGSGKSTFVN-LLLRL----YEPSDG----QIYIDGFPL 516 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~-LL~r~----y~p~~G----~I~idG~di 516 (637)
+++|+|++|+|||||++ ++.+- |.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 69999999999999996 55554 778877 778888543
No 239
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.82 E-value=0.00056 Score=64.48 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
+++|||++|+|||||++.+.+.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6999999999999999999986433
No 240
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.00081 Score=69.70 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~ 505 (637)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999876543
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.77 E-value=0.0007 Score=63.40 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
.|..+.|+|+|||||||+++.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999997654
No 242
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.75 E-value=0.0002 Score=69.17 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=50.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccC---CccccccHHHHHh--cCC-CCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE---PQLLQMDIKSNIM--YGC-PKD 553 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd---~~LF~gTI~eNI~--~g~-~~~ 553 (637)
.++|+|++||||||+++.|.+.+.+....+.+ +..+ ..++..++++.+. ++. +.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-------------------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 62 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-------------------LAFPRYGQSVAADIAAEALHGEHGDLASS 62 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-------------------EESSEEEEEEEEEEHHHHEEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-------------------EeecCCCCcchhhHHHHHHcccccccCCC
Confidence 68999999999999999999988754333321 1111 1112445555542 110 011
Q ss_pred CCHHHHHHHHHHcCHHHHHHcCCCCcccccCCC
Q 006650 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (637)
Q Consensus 554 ~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge~ 586 (637)
...+.+..++..++..+.|..++++.+++|.++
T Consensus 63 ~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~ 95 (214)
T 1gtv_A 63 VYAMATLFALDRAGAVHTIQGLCRGYDVVILDR 95 (214)
T ss_dssp HHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEE
T ss_pred HhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECC
Confidence 122333333444333667777766667888775
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.71 E-value=0.00063 Score=64.17 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+|..++|+|++||||||+++.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 244
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.71 E-value=0.00096 Score=69.96 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~ 506 (637)
++|..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999998776543
No 245
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.70 E-value=0.0012 Score=71.97 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+..+.|.||+|+|||||++.+.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 246
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.68 E-value=0.00031 Score=74.70 Aligned_cols=59 Identities=27% Similarity=0.286 Sum_probs=42.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhcceEEEccCCccccccHHHHHhcCCCCCCCHHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~de~v 559 (637)
++||||++|+|||||++.|+|.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999874 3 22222222 677777655 3467888
Q ss_pred HHHHHHcCHHH
Q 006650 560 EWAAKQAYVHE 570 (637)
Q Consensus 560 ~~A~~~a~l~~ 570 (637)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888877654
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.64 E-value=0.0003 Score=74.01 Aligned_cols=37 Identities=38% Similarity=0.445 Sum_probs=33.6
Q ss_pred CcccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHhcCC
Q 006650 466 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~--vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+++++++.+++|+. ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998753
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.61 E-value=0.00096 Score=61.79 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998665
No 249
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.59 E-value=0.0012 Score=63.14 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=25.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+|..++|.|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.57 E-value=0.0011 Score=62.51 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999998654
No 251
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.54 E-value=0.00085 Score=71.66 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 512 (637)
.+..++|+|+|||||||+++.++..+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 677899999999999999999998777788888774
No 252
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0013 Score=62.10 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+|..+.|.|++||||||+++.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999998754
No 253
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.51 E-value=0.0014 Score=63.66 Aligned_cols=32 Identities=44% Similarity=0.512 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
++..++|+|++||||||+++.|.++ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4568999999999999999999982 5555654
No 254
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.46 E-value=0.0011 Score=68.64 Aligned_cols=45 Identities=29% Similarity=0.254 Sum_probs=34.7
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc----CCCCCCceEEE
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPSDGQIYI 511 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r----~y~p~~G~I~i 511 (637)
.++++..+.+ .|+.++|+|+||+||||++..|.+ +...+...|..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 3678887887 899999999999999999988876 44444444444
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0014 Score=64.68 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
-++|.+++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999999986
No 256
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.44 E-value=0.0013 Score=61.74 Aligned_cols=39 Identities=28% Similarity=0.566 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC----CCCCCc----eEEECCEeC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRL----YEPSDG----QIYIDGFPL 516 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~----y~p~~G----~I~idG~di 516 (637)
.-+++++|++|+|||||++.+.+- |.|+.| .+.+++..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 347999999999999999999875 467777 566665443
No 257
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.44 E-value=0.0013 Score=62.31 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++|..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 258
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.44 E-value=0.0015 Score=66.93 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
++|..+.|+|+|||||||+++.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567899999999999999999987553 36777876
No 259
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.43 E-value=0.0018 Score=62.82 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=23.4
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~ 499 (637)
+.++++.+ ..++|+||+||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44555555 489999999999999998775
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.34 E-value=0.0017 Score=61.62 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++|..++|+|++||||||+++.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999998655
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.32 E-value=0.0018 Score=59.72 Aligned_cols=19 Identities=58% Similarity=0.976 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 006650 480 VVAIVGLSGSGKSTFVNLL 498 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL 498 (637)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 262
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.32 E-value=0.0028 Score=67.08 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------CCCCCCceEEECC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG 513 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r-----------~y~p~~G~I~idG 513 (637)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578889888776
No 263
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.31 E-value=0.0019 Score=62.14 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++|..++|.|++||||||+++.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998643
No 264
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.30 E-value=0.0065 Score=63.66 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 514 (637)
.+|..+-|.||+|+||||+++.+.+.......-+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 467789999999999999999999887644444555543
No 265
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.30 E-value=0.0019 Score=61.86 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
+|..++|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999986654
No 266
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.25 E-value=0.0014 Score=61.88 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCE
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGF 514 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~ 514 (637)
..++|+|+||||||||+.-|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999998888765432 55665554
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.25 E-value=0.0019 Score=60.60 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++..+.|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998554
No 268
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.24 E-value=0.0022 Score=61.75 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
.++|..++|+|++||||||+++.|...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999854
No 269
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.21 E-value=0.91 Score=50.74 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=6.2
Q ss_pred EEEEEEEECCC
Q 006650 451 QFVNISFHYPS 461 (637)
Q Consensus 451 ~f~nVsF~Y~~ 461 (637)
.++||||+-+.
T Consensus 356 ~l~~isl~i~~ 366 (578)
T 4a82_A 356 ILKDINLSIEK 366 (578)
T ss_dssp SEEEEEEEECT
T ss_pred ceeeeEEEECC
Confidence 35666666543
No 270
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.18 E-value=0.0029 Score=62.45 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G 507 (637)
+++|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999987766555
No 271
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.18 E-value=0.002 Score=60.24 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999998755
No 272
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.15 E-value=0.0019 Score=61.30 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=25.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
..+++..++|+|++||||||+++.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999998765
No 273
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.0071 Score=61.01 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++++..+-|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678889999999999999999998764
No 274
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.07 E-value=0.0058 Score=66.67 Aligned_cols=22 Identities=50% Similarity=0.578 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r 500 (637)
-+|+|||++|+|||||++.|.|
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999987
No 275
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0019 Score=60.52 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=18.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++..+.|.|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998544
No 276
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0031 Score=59.50 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++..++|+|++||||||+++.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.98 E-value=0.003 Score=63.35 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+.++|+|++|||||||++.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 278
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.96 E-value=0.02 Score=58.29 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 512 (637)
..+.|+|++||||||+++.|...+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 468999999999999999998733 2444553
No 279
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.95 E-value=0.022 Score=59.00 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+|+.-+-|.||+|+|||||++.+++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4567889999999999999999999865
No 280
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.94 E-value=0.0073 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
++.-+++++|++|+|||||++-+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999998876
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.94 E-value=0.0033 Score=59.12 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
.+.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 282
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.92 E-value=0.0062 Score=56.19 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999888764
No 283
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.91 E-value=0.0071 Score=65.20 Aligned_cols=36 Identities=36% Similarity=0.495 Sum_probs=28.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
.=++.+.+.|+|++||||||+++.|+.-+ |-+.++.
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 34567899999999999999999988644 4455543
No 284
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.88 E-value=0.0043 Score=60.38 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++|..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
No 285
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.88 E-value=0.0028 Score=69.01 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=74.1
Q ss_pred CcccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eE-EECCEeCCCCCHHHHhcceEEEccCCccccccHH
Q 006650 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QI-YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (637)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I-~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 543 (637)
+-|+++.--+++|+.+.|.|++|+||||++.-++.-.....| .+ +++. +.+.+.+.+++- .+...+-...++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~--~~~~~i~~~~l~ 261 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMM--CSEARIDMNRVR 261 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHH--HHHTTCCTTTCC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHH--HHHcCCCHHHHh
Confidence 357777656999999999999999999999777654433223 33 3332 345555554421 000000000111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCC
Q 006650 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATSALD 619 (637)
Q Consensus 544 eNI~~g~~~~~~de~v~~A~~~a~l~~fI~~lP~G~dT~vge-~~LSGGQkQRIaIARALl--k~p~ILILDEaTSaLD 619 (637)
-| ..++++..+..+.+ +.+...| -.+.+ ..+|..|- .+.+|.+. ++++++|+|.-+.-.+
T Consensus 262 ----~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 262 ----LG---QLTDRDFSRLVDVA---SRLSEAP----IYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp ----GG---GCCHHHHHHHHHHH---HHHHTSC----EEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred ----CC---CCCHHHHHHHHHHH---HHHhcCC----EEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 12 24556554443332 2233322 22222 36776653 56677776 4799999999987554
No 286
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.86 E-value=0.003 Score=60.19 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
++++||++|+|||||++-+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999653
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.83 E-value=0.0038 Score=61.07 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++..+.|+|++||||||+++.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998654
No 288
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.80 E-value=0.0049 Score=58.95 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++..++|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 289
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.79 E-value=0.0031 Score=64.79 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=31.2
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 473 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
+.+++++.+.|.||+|+||||+++.+.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4578999999999999999999999998653 34445543
No 290
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.78 E-value=0.0048 Score=57.15 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
=+.++|.|++||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999998643
No 291
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.77 E-value=0.0038 Score=58.74 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+.+++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998754
No 292
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.76 E-value=0.0045 Score=59.14 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 293
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0084 Score=54.68 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999886
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.73 E-value=0.0047 Score=59.71 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++|.|++||||||+++.|..-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 295
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.73 E-value=0.0041 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+...++|.|++||||||+++.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999998655
No 296
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.70 E-value=0.0051 Score=58.21 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 297
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.69 E-value=0.0046 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
..++|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 298
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0084 Score=57.52 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999997764
No 299
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.68 E-value=0.0046 Score=59.83 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++|+|++||||||+++.|..-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997655
No 300
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.66 E-value=0.0057 Score=56.44 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998744
No 301
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.62 E-value=0.0048 Score=60.07 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++..+.|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998655
No 302
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.61 E-value=0.003 Score=64.81 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++-++||.|+|||||||+++.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998755
No 303
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.58 E-value=0.0057 Score=57.47 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+..++|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
No 304
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.57 E-value=0.006 Score=57.46 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 305
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.56 E-value=0.0037 Score=65.54 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999987663
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.56 E-value=0.046 Score=59.22 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
++.+++++|++|+||||++.-|++.+.-..-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 57899999999999999999888888765556654
No 307
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.55 E-value=0.0062 Score=58.50 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.-.++|+|.+||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998763
No 308
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.0015 Score=67.96 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=29.3
Q ss_pred cccceeEEeeCC--CEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 467 ILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 467 vL~~isl~I~~G--e~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 555555556666 4499999999999999999998764
No 309
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.48 E-value=0.0064 Score=60.62 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
-+|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998743
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.48 E-value=0.01 Score=54.11 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCCCc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY-----EPSDG 507 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y-----~p~~G 507 (637)
+++++|++|+|||||++-+.+-. .|+.|
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~ 40 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG 40 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee
Confidence 68999999999999998887643 45555
No 311
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.46 E-value=0.0071 Score=55.04 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 312
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.46 E-value=0.0089 Score=60.25 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 006650 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKA 628 (637)
Q Consensus 595 RIaIARALlk~p~ILILDEaTSaLD~~tE~~I~~ 628 (637)
|++|||||..+|+++++|||| |.++...+.+
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~ 118 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR 118 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH
Confidence 899999999999999999999 9988655443
No 313
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.44 E-value=0.007 Score=60.13 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++-.++|.|++||||||+++.|..-|
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 366789999999999999999998655
No 314
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.44 E-value=0.014 Score=54.33 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=25.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc----CCCCCCc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLR----LYEPSDG 507 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r----~y~p~~G 507 (637)
++.=+++++|++|+|||||++-+.+ -|.|+-|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 51 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG 51 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc
Confidence 4556899999999999999999986 3455555
No 315
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.44 E-value=0.0065 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|++|+|||||++-+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 316
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.40 E-value=0.0099 Score=55.91 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999998886
No 317
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.39 E-value=0.01 Score=55.68 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998865
No 318
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.37 E-value=0.0083 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|++|+|||||++-+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 69999999999999999998654
No 319
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.36 E-value=0.0082 Score=54.35 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988774
No 320
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.35 E-value=0.012 Score=53.57 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCCc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDG 507 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G 507 (637)
+++++|++|+|||||++-+.+- +.|+.|
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~ 40 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 6899999999999999888752 445555
No 321
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.34 E-value=0.015 Score=55.39 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCCc------eEEECCE
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDG------QIYIDGF 514 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G------~I~idG~ 514 (637)
+++++|++|+|||||++-+.+- |.|+.| .+.++|.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 55 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 55 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE
Confidence 6999999999999999988752 445544 4556664
No 322
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.33 E-value=0.0086 Score=54.70 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998754
No 323
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.0084 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+.-+++++|++|+|||||++-+.+-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34489999999999999999998754
No 324
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.31 E-value=0.0082 Score=59.80 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
=+|+|||++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998743
No 325
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.31 E-value=0.0085 Score=60.17 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999874
No 326
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.31 E-value=0.0089 Score=55.99 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
+++++|++|+|||||++.+.+-+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987654
No 327
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.30 E-value=0.0093 Score=62.29 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3667999999999999999999997764
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.29 E-value=0.0084 Score=60.16 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++..+.|+|++||||||+++.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 329
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.29 E-value=0.0083 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 330
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.28 E-value=0.0088 Score=54.20 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 331
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.26 E-value=0.0093 Score=53.91 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999888643
No 332
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.25 E-value=0.0082 Score=60.51 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999998753
No 333
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.24 E-value=0.013 Score=54.72 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCCce
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 508 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 508 (637)
+++++|++|+|||||++-+.+- |.|+.|.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 42 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 42 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce
Confidence 6899999999999999988754 4566553
No 334
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.24 E-value=0.0092 Score=54.19 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 335
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.23 E-value=0.0081 Score=61.14 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 336
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.23 E-value=0.0095 Score=54.37 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999888753
No 337
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.20 E-value=0.0091 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
No 338
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.035 Score=58.34 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++...+.|.||+|+||||+++.+++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567789999999999999999998764
No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.19 E-value=0.013 Score=56.55 Aligned_cols=34 Identities=32% Similarity=0.260 Sum_probs=27.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
.++...+.+ .|..+.|+||||||||||+.-|..-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 566665554 6899999999999999999777643
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.17 E-value=0.01 Score=54.79 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987765
No 341
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.17 E-value=0.01 Score=54.03 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988864
No 342
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.17 E-value=0.01 Score=54.67 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 343
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.13 E-value=0.0088 Score=60.43 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
++++||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999987653
No 344
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.11 E-value=0.01 Score=57.67 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+|-.+.|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 345
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.11 E-value=0.0075 Score=61.54 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCce-EEECCEeC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPL 516 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~-I~idG~di 516 (637)
...+.|+||+|+||||+++.+.+...+.+|. +.+|...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4579999999999999999999998877774 44554333
No 346
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.11 E-value=0.008 Score=58.15 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+..++|+|++||||||+.+.|.+.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998754
No 347
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.09 E-value=0.01 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
No 348
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.06 E-value=0.01 Score=55.82 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+--+++++|++|+|||||++-|.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 349
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.01 E-value=0.012 Score=54.74 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-|.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 350
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.00 E-value=0.02 Score=60.31 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++.-+-|.||+|+|||||++.+++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 566679999999999999999999765
No 351
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.00 E-value=0.011 Score=55.37 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
-+++++|++|+|||||++-+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999988653
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.99 E-value=0.019 Score=53.15 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 508 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r-----~y~p~~G~ 508 (637)
+++++|++|+|||||++-+.+ -|+|+.|.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 41 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 41 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence 699999999999999988872 34565553
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.99 E-value=0.012 Score=54.87 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++|+|++|+|||||++-+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999885
No 354
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.96 E-value=0.012 Score=59.68 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|++|+|||||++.|.|-.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999853
No 355
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.94 E-value=0.014 Score=53.84 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 356
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.02 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r 500 (637)
=+++++|++|+|||||++-+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999875
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.93 E-value=0.013 Score=53.20 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988864
No 358
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.92 E-value=0.016 Score=54.41 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc------CCCCCCc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLR------LYEPSDG 507 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r------~y~p~~G 507 (637)
+.-+++++|++|+|||||++-+.+ -|.|+-|
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 445799999999999999999986 4566666
No 359
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.017 Score=54.35 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDG 507 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r-----~y~p~~G 507 (637)
+++++|++|+|||||++-+.+ -+.|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 689999999999999998874 3456666
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.90 E-value=0.022 Score=52.82 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 361
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.90 E-value=0.012 Score=54.92 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999988864
No 362
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.013 Score=54.01 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999988874
No 363
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.88 E-value=0.012 Score=56.80 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 364
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.86 E-value=0.013 Score=53.89 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999998874
No 365
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.86 E-value=0.014 Score=53.34 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhcC
Q 006650 600 RAILRDPAILLLDEATSALDSESEHYVKANTLDSLLQK 637 (637)
Q Consensus 600 RALlk~p~ILILDEaTSaLD~~tE~~I~~~il~~l~~~ 637 (637)
...+++..+-++ +|||.+.+.-..+.+.+.+.+.++
T Consensus 135 ~~~~~~~~~~~~--~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 135 LPALKDRKWQIF--KTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp GGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred chhccCCceEEE--ECcCCCCcCHHHHHHHHHHHHhhc
Confidence 344555555444 699999999888888888777653
No 366
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.82 E-value=0.014 Score=57.19 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999877654
No 367
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.81 E-value=0.02 Score=54.95 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCCce
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 508 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 508 (637)
+++++|++|+|||||++-+.+- |.|+.|.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~ 63 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 63 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce
Confidence 6999999999999999999864 4566553
No 368
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.81 E-value=0.011 Score=57.41 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+++..+.|+||+|+||||+++.+.+...
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999986554
No 369
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.78 E-value=0.015 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999888754
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.78 E-value=0.015 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 371
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.76 E-value=0.016 Score=59.86 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++..++|+||||||||||+.-|+.-+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC
Confidence 35689999999999999999888655
No 372
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.026 Score=54.81 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+|+|||.+|+|||||++-+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999864
No 373
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.75 E-value=0.013 Score=57.79 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=21.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
..+|..++|-|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999876553
No 374
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.74 E-value=0.017 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++..+.|+|++||||||+++.|...|
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998665
No 375
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.73 E-value=0.015 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999888753
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.72 E-value=0.015 Score=56.70 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998655
No 377
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.71 E-value=0.021 Score=53.82 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=25.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
.++...+ --.|.-+.|.|+||+||||++..|..
T Consensus 6 ~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444444 45799999999999999999976654
No 378
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.70 E-value=0.016 Score=53.69 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+|+++|++|+|||||++-+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999998874
No 379
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.65 E-value=0.025 Score=53.19 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999988863
No 380
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.65 E-value=7 Score=43.51 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=7.2
Q ss_pred EEEEEEEECC
Q 006650 451 QFVNISFHYP 460 (637)
Q Consensus 451 ~f~nVsF~Y~ 460 (637)
.++||||+-+
T Consensus 358 ~l~~i~l~i~ 367 (582)
T 3b5x_A 358 ALSHVSFSIP 367 (582)
T ss_pred ccccceEEEC
Confidence 4778888764
No 381
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.64 E-value=0.017 Score=56.38 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+|..++|-|++||||||+++.|...+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987554
No 382
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.63 E-value=0.022 Score=53.47 Aligned_cols=22 Identities=45% Similarity=0.680 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r 500 (637)
=+++++|++|+|||||++-+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998884
No 383
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.63 E-value=0.014 Score=61.10 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
..++|+||||||||||++.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999998887653
No 384
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.63 E-value=0.016 Score=59.63 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
++||||++|+|||||++-|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.61 E-value=0.016 Score=53.86 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988874
No 386
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.61 E-value=0.017 Score=54.16 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.61 E-value=0.0016 Score=76.28 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.8
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 006650 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (637)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 518 (637)
..++.+++|+.+.|+||+|+|||||++.|++... .+-|.+++.++.+
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 3467789999999999999999999999999875 4567777766543
No 388
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.61 E-value=0.016 Score=64.23 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+....|.++|.+||||||+.+.|.+.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998765
No 389
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.61 E-value=0.017 Score=54.76 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++|+|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 390
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.60 E-value=0.018 Score=60.90 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=25.0
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~ 499 (637)
++..+++.+ ..++|+|++|||||||+..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 566677666 589999999999999998765
No 391
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.60 E-value=0.095 Score=56.88 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=26.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
-|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555543589999999999999999999855543
No 392
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.59 E-value=0.019 Score=51.96 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=28.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 513 (637)
+.+.-+-|.||+|+|||++++.|........+...+|.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~ 59 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC
Confidence 45667999999999999999999887655444332433
No 393
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.59 E-value=0.017 Score=55.12 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G 507 (637)
..+.|.||+|+|||||++.+.+......+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~ 83 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNV 83 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999986654433
No 394
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.57 E-value=0.017 Score=54.70 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++|||.+|+|||||++-+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
No 395
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.57 E-value=0.017 Score=54.58 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCCce
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 508 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 508 (637)
+|+++|++|+|||||++-+.+- |.|+.|.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 49 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 49 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce
Confidence 6899999999999999988743 4555553
No 396
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.57 E-value=0.017 Score=57.61 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
-+|+|+|++|+|||||++-|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 397
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.56 E-value=0.019 Score=57.07 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999876553
No 398
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.015 Score=57.34 Aligned_cols=26 Identities=42% Similarity=0.589 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+|..++|.|..||||||+++.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998766
No 399
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.54 E-value=0.011 Score=57.09 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.-+++++|++|+|||||++-|.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998753
No 400
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.54 E-value=0.012 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
+.-+++++|++|+|||||++-+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999998873
No 401
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.54 E-value=0.018 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++|..+++.|.+||||||+++.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987644
No 402
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.51 E-value=0.02 Score=55.89 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+|..+.+-|++||||||++++|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999986654
No 403
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.51 E-value=0.011 Score=64.56 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=33.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 511 (637)
+++.+ ..+-+|++++|+|+||+|||||++.|.+-.....|.|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 45444 577899999999999999999999888765543444443
No 404
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.50 E-value=0.021 Score=52.89 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
..+..+.|+|++|+||||+++.+.+.+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999998887653
No 405
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.50 E-value=0.012 Score=59.06 Aligned_cols=29 Identities=41% Similarity=0.497 Sum_probs=24.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
.++|..|+|.|..||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46788999999999999999999987763
No 406
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.50 E-value=0.019 Score=53.81 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 407
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.48 E-value=0.019 Score=53.86 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 599999999999999998886
No 408
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.47 E-value=0.018 Score=54.46 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+++++|.+|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999988544
No 409
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.46 E-value=0.018 Score=54.72 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+.=+++++|++|+|||||++-+.+-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3447999999999999999998863
No 410
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.019 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999888643
No 411
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.46 E-value=0.02 Score=54.29 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
No 412
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.45 E-value=0.019 Score=53.09 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988863
No 413
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.42 E-value=0.011 Score=57.94 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
+.++.+++.|+||.||||+|.++.|+.-|.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456778999999999999999999997663
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.019 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++|+|++|+|||||++-+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999988853
No 415
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.38 E-value=0.02 Score=55.75 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
-+++++|++|+|||||++-+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998864
No 416
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.37 E-value=0.019 Score=54.10 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
No 417
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.34 E-value=0.02 Score=58.96 Aligned_cols=23 Identities=52% Similarity=0.586 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
-+|||+|++|+|||||++-|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999874
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.33 E-value=0.024 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
+-=+++++|++|+|||||++-+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999988874
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.33 E-value=0.021 Score=53.63 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999998875
No 420
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.33 E-value=8.2 Score=42.95 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=7.2
Q ss_pred EEEEEEEECC
Q 006650 451 QFVNISFHYP 460 (637)
Q Consensus 451 ~f~nVsF~Y~ 460 (637)
.++||||+-+
T Consensus 358 ~l~~v~~~i~ 367 (582)
T 3b60_A 358 ALRNINLKIP 367 (582)
T ss_dssp SEEEEEEEEC
T ss_pred cccceeEEEc
Confidence 4788888764
No 421
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.021 Score=54.59 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
...|+.|.-.+--+++++|++|+|||||++-+.+
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3444444433445899999999999999998886
No 422
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.28 E-value=0.021 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|.+|||||||++-|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999854
No 423
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.24 E-value=8.6 Score=42.89 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=6.6
Q ss_pred EEEEEEEECCC
Q 006650 451 QFVNISFHYPS 461 (637)
Q Consensus 451 ~f~nVsF~Y~~ 461 (637)
.++||||+-+.
T Consensus 359 vl~~isl~i~~ 369 (595)
T 2yl4_A 359 IFQDFSLSIPS 369 (595)
T ss_dssp EEEEEEEEECT
T ss_pred cccceEEEEcC
Confidence 46666666653
No 424
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.23 E-value=0.022 Score=54.14 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999998874
No 425
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.023 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
+.=+++++|++|+|||||++-+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999998884
No 426
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.22 E-value=0.022 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
-+++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999887754
No 427
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.024 Score=53.51 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC-----CCCCCce
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 508 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 508 (637)
.=+++++|++|+|||||++-+.+- |+|+.|.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 63 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 63 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc
Confidence 347999999999999999888753 4555553
No 428
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.024 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r 500 (637)
=+++++|++|+|||||++-+.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999999999998875
No 429
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.18 E-value=0.023 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
+.=+|+++|++|+|||||++-+.+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 344799999999999999998874
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.18 E-value=0.019 Score=53.03 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998874
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.17 E-value=0.021 Score=59.28 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999997663
No 432
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.14 E-value=0.019 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
.=+++++|++|+|||||++-+.+-
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999988754
No 433
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.13 E-value=0.021 Score=53.16 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc----CCCCCCc----eEEECCEe
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLR----LYEPSDG----QIYIDGFP 515 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r----~y~p~~G----~I~idG~d 515 (637)
=+++++|++|+|||||++-+.+ -+.|+-| .+.++|..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 66 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEE
Confidence 4789999999999999999885 3445544 35555543
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.11 E-value=0.025 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
++.=+++++|++|+|||||++-+.+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3445899999999999999988874
No 435
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.11 E-value=0.025 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|.+|+|||||++-|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999843
No 436
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.09 E-value=0.026 Score=56.79 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~ 508 (637)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 437
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.09 E-value=0.01 Score=63.02 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=40.5
Q ss_pred CCcEEEEEEEEECCCCCCcCccc-----------ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 447 MGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
.+.+.|++++--||... ..++ |.=+.|-+|++.+|+|++|+|||||++-|.+-
T Consensus 135 ~~r~~fe~l~Pi~P~~R--~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 135 NDRVNFDNLTPDYPRER--FILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp -CCCCGGGSCEECCCSB--CCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccccccccCCCCCchhh--ccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 34566777777776432 2345 66678999999999999999999999988875
No 438
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.08 E-value=0.039 Score=52.61 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 508 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r-----~y~p~~G~ 508 (637)
+.=+++++|++|+|||||++-+.+ -|.|+.|.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~ 65 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD 65 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc
Confidence 345799999999999999977763 34555543
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.07 E-value=0.025 Score=54.44 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999998885
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.04 E-value=0.027 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+|+|+|++|+|||||++-+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988853
No 441
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.04 E-value=0.027 Score=52.90 Aligned_cols=29 Identities=34% Similarity=0.553 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 508 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r-----~y~p~~G~ 508 (637)
+++++|++|+|||||++-+.+ -|.|+-|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 799999999999999977753 35566653
No 442
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.00 E-value=0.028 Score=53.12 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC-----CCCCCc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRL-----YEPSDG 507 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G 507 (637)
++.=+++++|++|+|||||++-+.+- |.|+.|
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~ 54 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF 54 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc
Confidence 34457999999999999999888743 455555
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.99 E-value=0.027 Score=53.87 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
--+++++|++|+|||||++-+.+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999988874
No 444
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.99 E-value=0.026 Score=53.66 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998885
No 445
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.95 E-value=0.026 Score=56.46 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|.+|+|||||++.|.+-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 446
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.95 E-value=0.037 Score=53.37 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC-----CCCCCce
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 508 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 508 (637)
.=+++++|++|+|||||++-+.+- |.|+-|.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~ 62 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE 62 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee
Confidence 347999999999999999888753 4555553
No 447
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.94 E-value=0.026 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++++|++|+|||||++.|.+--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 448
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.93 E-value=0.019 Score=53.33 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=9.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988764
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.92 E-value=0.026 Score=58.27 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
...+.|+||||||||||+.-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999988665
No 450
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.88 E-value=0.028 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++-+++++|++|+|||||++-+.+-
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999987754
No 451
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.83 E-value=0.028 Score=57.54 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.++|||++|+|||||++-|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 452
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.82 E-value=0.026 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
-++++||.+|+|||||++-|.|--
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 379999999999999999998754
No 453
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.81 E-value=0.026 Score=52.12 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
+.+..+.|+||+|+||||+++.+.+....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44677899999999999999998876643
No 454
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.77 E-value=0.03 Score=52.52 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999988874
No 455
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.77 E-value=0.028 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
++.=+++++|++|+|||||++-+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999998864
No 456
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.72 E-value=11 Score=42.10 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=9.8
Q ss_pred EEEEEEEEECCCC
Q 006650 450 VQFVNISFHYPSR 462 (637)
Q Consensus 450 I~f~nVsF~Y~~~ 462 (637)
-.++||||+-+.+
T Consensus 357 ~~l~~isl~i~~G 369 (587)
T 3qf4_A 357 PVLSGVNFSVKPG 369 (587)
T ss_dssp CSEEEEEEEECTT
T ss_pred cceeceEEEEcCC
Confidence 4588999988754
No 457
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.71 E-value=0.026 Score=62.29 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=29.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCc--eEEECC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDG--QIYIDG 513 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G--~I~idG 513 (637)
+.|-.+.++|.|||||||+.+.|+.-+.- +.| .-++||
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDg 433 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH 433 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecC
Confidence 56789999999999999999999977654 322 235565
No 458
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.65 E-value=0.032 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
-+++|+|.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999777654
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.52 E-value=0.017 Score=55.40 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988774
No 460
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.46 E-value=0.012 Score=58.70 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=24.7
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++...++| +.|.||+|+||||+++.+.+
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHH
Confidence 44445555555 88999999999999999986
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.44 E-value=0.036 Score=59.26 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
...++|+||||||||||+.-|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999998887655
No 462
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.42 E-value=0.042 Score=54.28 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=23.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++..-+.|.||+|+||||+++.+.+.+
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455678999999999999999998643
No 463
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.42 E-value=0.038 Score=52.60 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++++|++|+|||||++-+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 699999999999999988864
No 464
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.39 E-value=0.041 Score=56.77 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 474 TIEANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 474 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
-+++|+.+.|.|++||||||++.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999976663
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.36 E-value=0.026 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~ 499 (637)
+.=+++++|++|+|||||++-+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999885
No 466
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.33 E-value=0.034 Score=58.62 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=33.3
Q ss_pred CcccceeEE---eeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECC
Q 006650 466 PILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDG 513 (637)
Q Consensus 466 ~vL~~isl~---I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~idG 513 (637)
+-|+.+ +. +++|+.+.|.|++|||||||+.-++.-.. .....+++|.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345555 33 89999999999999999999966654332 2234556665
No 467
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.29 E-value=0.054 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHH
Q 006650 475 IEANEVVAIVGLSGSGKSTFVNL 497 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~~L 497 (637)
+++|+.+-|.|++|+||||++.=
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~ 49 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 89999999999999999999843
No 468
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.24 E-value=0.012 Score=63.82 Aligned_cols=39 Identities=26% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di 516 (637)
...++++|++|+||||++.-|++.+.....+|.+-..|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 368999999999999999999988875555666544443
No 469
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.044 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r 500 (637)
+++|+|++|+|||||++-+.+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999988875
No 470
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.17 E-value=0.038 Score=61.97 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=28.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc---eEEECC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG---QIYIDG 513 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G---~I~idG 513 (637)
++|..+.|.|.|||||||+++.|...+.- .| .+.+||
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~ 433 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLG 433 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECc
Confidence 45678999999999999999999876542 23 466665
No 471
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.16 E-value=0.034 Score=60.67 Aligned_cols=47 Identities=30% Similarity=0.365 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC----CCCCC--------ceEEECCEeCCCCCHHH
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRL----YEPSD--------GQIYIDGFPLTDLDIRW 523 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~----y~p~~--------G~I~idG~di~~i~~~~ 523 (637)
.|=+|+|||++|+|||||++.|++- ..+.. ..+.++|.++.=+|..-
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G 281 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAG 281 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCc
Confidence 4556999999999999999999873 12222 35788888766555443
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.14 E-value=0.021 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=5.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
=+++++|++|+|||||++-+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999877654
No 473
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.12 E-value=0.041 Score=58.25 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
++..+++||.+|+|||||+|.|.+-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 6789999999999999999999986
No 474
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.06 E-value=0.049 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
|+.|+|=|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 475
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.03 E-value=0.054 Score=51.86 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=27.8
Q ss_pred cccceeEEeeCCC---EEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 467 ILNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 467 vL~~isl~I~~Ge---~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
.++.+.-.+..|+ .+.|.||+|+||||+++.+.+.+..
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444443444555 7999999999999999999876543
No 476
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.03 E-value=0.054 Score=55.11 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G 507 (637)
+-++++||.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 447999999999999999999986644333
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.98 E-value=0.047 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 006650 479 EVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 479 e~vAIVG~SGsGKSTL~~LL~r 500 (637)
=+++++|++|+|||||++-+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999988874
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.90 E-value=0.037 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~ 503 (637)
++.|.||.||||+|.++.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998773
No 479
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.83 E-value=0.049 Score=61.56 Aligned_cols=40 Identities=28% Similarity=0.231 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPL 516 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di 516 (637)
+|..+.|+|.+||||||+++.|...+.- .-..+.+||..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 5678999999999999999999876521 112566665443
No 480
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.82 E-value=0.076 Score=57.41 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+|||||.+++|||||++-|.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999864
No 481
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.76 E-value=0.043 Score=58.05 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+|..+++||.+|+|||||+|.|.+-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 68899999999999999999999864
No 482
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.66 E-value=0.063 Score=56.23 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 006650 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
..+.++++---.|+|||.+|+|||||++.|.+-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 456666666668999999999999999998853
No 483
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.56 E-value=16 Score=40.81 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006650 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNV 312 (637)
Q Consensus 276 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (637)
++.+...+.....+...+..++..+...+..+...+.
T Consensus 186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 222 (598)
T 3qf4_B 186 IVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEED 222 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555554444444443
No 484
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.44 E-value=0.068 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 478 Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.-+|+|.|+.||||||+.+.|+.-+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998644
No 485
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.41 E-value=0.067 Score=52.11 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC----CCCCCc
Q 006650 480 VVAIVGLSGSGKSTFVNLLL-RL----YEPSDG 507 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~-r~----y~p~~G 507 (637)
+|+|||.+|+|||||++-+. +- |.|+-|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig 47 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc
Confidence 69999999999999997654 33 456655
No 486
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.39 E-value=0.056 Score=58.42 Aligned_cols=22 Identities=50% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+|||||++|+|||||++-|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 487
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.25 E-value=0.072 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++..+-|.||+|+||||+++.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 356679999999999999998777655
No 488
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.23 E-value=0.055 Score=59.29 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC----C--------CCCceEEECCEeCCCCCH
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY----E--------PSDGQIYIDGFPLTDLDI 521 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y----~--------p~~G~I~idG~di~~i~~ 521 (637)
.|=+|+|||++|+|||||++-|.+-- . +..+.+.++|.++.=+|.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT 288 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDT 288 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEEC
Confidence 45569999999999999999998752 1 223457778876654443
No 489
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.17 E-value=0.12 Score=55.70 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC----CC--------CceEEECCEeCCCCCHHHHhc
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLYE----PS--------DGQIYIDGFPLTDLDIRWLRE 526 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y~----p~--------~G~I~idG~di~~i~~~~lR~ 526 (637)
++++||.+|+|||||++-|+|-.. +. .+.+.++|..+.=+|..-.|+
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 899999999999999999987532 22 235667777666666555543
No 490
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.08 E-value=0.055 Score=52.09 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCC-----CCCHHHHHHHHHHHH
Q 006650 593 KQRIAIARAILRDPAILLLDEATS-----ALDSESEHYVKANTL 631 (637)
Q Consensus 593 kQRIaIARALlk~p~ILILDEaTS-----aLD~~tE~~I~~~il 631 (637)
.=.-.|++.++++|..-..++|+. .+|....+++.+.+-
T Consensus 164 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
T 3gj0_A 164 KPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLE 207 (221)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHh
Confidence 334578999999999988888776 678888877776653
No 491
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.06 E-value=0.068 Score=56.05 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
++..+.|.||+|+||||+++.|.+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45668899999999999999999876
No 492
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.23 E-value=0.029 Score=53.29 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r 500 (637)
+.=+++++|++|+|||||++-+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 344799999999999999977653
No 493
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.94 E-value=0.047 Score=56.50 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=28.0
Q ss_pred eeCCCEEEEEcCCCCcHHHHH-HHHhcCCCC--CCceEEECCE
Q 006650 475 IEANEVVAIVGLSGSGKSTFV-NLLLRLYEP--SDGQIYIDGF 514 (637)
Q Consensus 475 I~~Ge~vAIVG~SGsGKSTL~-~LL~r~y~p--~~G~I~idG~ 514 (637)
+++| .+-|.||+|||||||+ +++...... ..-.++||+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 7899 9999999999999995 555444432 2335666663
No 494
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.84 E-value=0.069 Score=50.61 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHhcCC
Q 006650 477 ANEVVAIVGLSGSGKSTFV-NLLLRLY 502 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~-~LL~r~y 502 (637)
+|+.+.++|+.||||||++ +++.++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999997 6666554
No 495
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.84 E-value=0.077 Score=56.74 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+++|||.+|+|||||++.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998753
No 496
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.83 E-value=0.063 Score=56.67 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 504 (637)
++-.++.|+|.+||||||++|-+--+|.|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~~ 59 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHGQ 59 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHSC
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44578999999999999999998767766
No 497
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.68 E-value=0.084 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
.+.|.||+|+||||+++.+.+.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999988653
No 498
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.60 E-value=0.021 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 006650 480 VVAIVGLSGSGKSTFVNLLLRL 501 (637)
Q Consensus 480 ~vAIVG~SGsGKSTL~~LL~r~ 501 (637)
+++++|++|+|||||++-+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999887753
No 499
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=91.57 E-value=0.035 Score=60.98 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC------------CCCCceEEECCEeC
Q 006650 477 ANEVVAIVGLSGSGKSTFVNLLLRLY------------EPSDGQIYIDGFPL 516 (637)
Q Consensus 477 ~Ge~vAIVG~SGsGKSTL~~LL~r~y------------~p~~G~I~idG~di 516 (637)
.|=+|+|||++|+|||||++.|.+-. ++..+.+.++|.++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~ 293 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILF 293 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEE
Confidence 34479999999999999999998742 23456777887654
No 500
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.55 E-value=0.084 Score=58.86 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 006650 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (637)
Q Consensus 476 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 502 (637)
+.|..+.+.|.+||||||+++.|...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998755
Done!