BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006651
         (637 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P31904|HYPD2_BRAJA Hydrogenase expression/formation protein hypD2 OS=Bradyrhizobium
           japonicum (strain USDA 110) GN=hypD2 PE=3 SV=2
          Length = 380

 Score = 41.2 bits (95), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 172 IMGSKSMINILKSPLLSKLGKLDGDGNFRRTSVNDVKGSISYDFMKS----PGGFSGYSP 227
           ++   +M NIL+SP +  +G+++ DG      V+ + G+  Y+F       P   +G+ P
Sbjct: 172 VLTPPAMQNILESPDIRNIGRVEIDGFVGPAHVSTIIGTAPYEFFAEEFGKPVVIAGFEP 231

Query: 228 QKIEKQTWML----GNHKHGSETAHKRLAS 253
             + +   ML      H+H  E  + R  S
Sbjct: 232 LDMMQAILMLVRQVNEHRHEVENQYSRAVS 261


>sp|Q94757|TCPA_SCHMA T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A
           PE=2 SV=1
          Length = 545

 Score = 34.3 bits (77), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 75  STHGLDTKIPKHMVTLDERYLRRCLELIHKSASKAAQCNISVDLGSAKMGFMWDDM---N 131
           +T G+D    K+ V ++   +RRC ++  K+ +KA    + V L   +   ++D     N
Sbjct: 285 TTGGIDDLCMKYFVEVNAMAVRRCKKVDLKNMAKATGGQLIVSLADMEGDEVFDPTKLGN 344

Query: 132 VAKCRTENACDSARFIFECPMITGSESVVISPAGQWIV 169
             +   E  CD    I   P +  S S+++  A  + V
Sbjct: 345 AEEVSQERICDDELIILRGPKVHPSASIILRGANDFYV 382


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,580,613
Number of Sequences: 539616
Number of extensions: 9912613
Number of successful extensions: 24780
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 24678
Number of HSP's gapped (non-prelim): 111
length of query: 637
length of database: 191,569,459
effective HSP length: 124
effective length of query: 513
effective length of database: 124,657,075
effective search space: 63949079475
effective search space used: 63949079475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)