Query 006651
Match_columns 637
No_of_seqs 67 out of 69
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 12:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12043 DUF3527: Domain of un 100.0 1E-108 2E-113 848.5 27.9 333 270-627 1-346 (346)
2 PF01167 Tub: Tub family; Int 99.7 5.9E-16 1.3E-20 154.9 17.0 108 506-624 122-246 (246)
3 KOG2502 Tub family proteins [G 99.6 4.7E-15 1E-19 154.8 17.3 108 507-626 229-351 (355)
4 KOG2503 Tubby superfamily prot 97.0 0.00049 1.1E-08 76.2 3.9 80 538-624 471-561 (565)
5 PF02044 Bombesin: Bombesin-li 67.8 1.3 2.7E-05 28.0 -0.6 13 165-177 2-14 (14)
6 smart00557 IG_FLMN Filamin-typ 15.5 2.6E+02 0.0057 24.1 4.3 34 576-609 32-65 (93)
7 PF05450 Nicastrin: Nicastrin; 14.9 84 0.0018 32.4 1.4 51 163-221 59-109 (234)
8 PF10905 DUF2695: Protein of u 11.3 95 0.0021 25.9 0.4 15 531-545 34-49 (53)
9 PF12772 GHBP: Growth hormone 11.0 1.9E+02 0.0041 31.5 2.5 59 146-211 148-206 (295)
10 KOG3224 Uncharacterized conser 10.6 1.9E+02 0.0041 31.1 2.4 53 272-324 67-137 (278)
No 1
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=100.00 E-value=1.1e-108 Score=848.50 Aligned_cols=333 Identities=44% Similarity=0.775 Sum_probs=289.0
Q ss_pred CcccceeEEEEEecCCcceEEEEeCCcceEEEEeecccCCCCCCCcceEEEEEeccCCccc---cccC---C-CCccceE
Q 006651 270 STSTSLGVLQCMWDGGNPHFVFSIDDRKEVFVANLSNSESGNSKSMDYMYSFHWRKGGQKE---HEIC---D-NESLLVG 342 (637)
Q Consensus 270 ssS~~qglLQl~~KnG~P~FeFsld~p~eV~vA~~~k~~~~dd~~ln~vYtFHs~k~g~K~---~~~~---d-~~s~lVG 342 (637)
||+++||+|||+||||+|||+|+||||++||||++||+++.++++++||||||+.++++|. |..+ + ..++|||
T Consensus 1 S~s~~qalLq~t~KNG~P~F~Fsvd~~~~VlaAt~~k~~~~~~~~~~~vYTFhs~~e~KKks~~w~~~~~k~k~~~~iVG 80 (346)
T PF12043_consen 1 SPSHLQALLQCTWKNGLPLFEFSVDNPEEVLAATMWKSGSSDKNDLNWVYTFHSIKEVKKKSGSWINSGDKNKSSSNIVG 80 (346)
T ss_pred CCcceeEEEEEEEeCCeEEEEEEeCCcccEEEEEEeecccccccccceEEEEEeeccccccccccccccccccCCcceEE
Confidence 5799999999999999999999999999999999999999999999999999996654442 2222 1 2448999
Q ss_pred EEEeeeeecccCCCCce-eeeeEEEeecCCCCCCCcccchhhhhcccCcchhhhhccccccccccccccccCCCcccccC
Q 006651 343 KMKVSISFNLCPDNSKI-METQFTLFGSNEDFGGGMQTSRQAARKNKGLSKKVVDAFRTTHSFKRRTLSKFGGSSAILEN 421 (637)
Q Consensus 343 QMkVSss~sLcs~Ns~~-m~tEFVLyg~~~~~~~~~qt~s~~~rk~kgLsk~V~e~~~~~~ss~~r~~sk~~~sss~~e~ 421 (637)
|||||+++++|+++..+ |+|||||||+++.+.. .+ ..+.+|++++|++++++++.. |++|||++++++++.
T Consensus 81 QMkVSss~~~~~~~~~~s~~~EFVLf~~~~~~~~-~s-----~~~~~~~~~~~~~~~~~s~~~--~~~s~~~~~~~~~~~ 152 (346)
T PF12043_consen 81 QMKVSSSLSSEPSKQGSSMVTEFVLFGVDHARRS-QS-----SEEKKGLSKRVSEPMKASNVS--RSISRFSGSSAILED 152 (346)
T ss_pred EEEeeeeeeecccCCcceeEEEEEEEeccccccc-cc-----cccccccccccccccccCccc--ccccccCCcchhhhh
Confidence 99999999999887776 9999999998876522 22 122379999999999997755 899999999999999
Q ss_pred CCCccccCCCCCCCccccccccccCCCCCceeeeeeeeccCCccchh-----hccCccccccccccccccccccccCCCC
Q 006651 422 SSWEPCQNLGGNDDSLGAACLLENHLPPNLELAAIIVKEHLPENRQE-----EVGGWGMKFLKKVGIKKTVETLKTSAPS 496 (637)
Q Consensus 422 ~~~e~~q~~~~n~d~~~~~~l~~~dL~PNlElAAIVVk~~~P~~k~e-----~~Ggwglkfl~ks~~~~~~~~~k~sl~~ 496 (637)
++|+++++. .|.++++||+++|||||+||||||||+ |++|++ +.||||+||+++.+..+..+.
T Consensus 153 ~~~~~~~~~---~~~~~~~~~~~~dl~~n~ElAAiVvk~--p~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~------- 220 (346)
T PF12043_consen 153 KSQEPFQNN---SDNSESVPLLENDLPPNLELAAIVVKI--PFEKRESLKYDRGGGWGLKFLSKSPDNQRCET------- 220 (346)
T ss_pred hcccccccc---ccccccCccccccCCCCceEEEEEEec--cccccccccccccCcccchhhhcccccccccc-------
Confidence 999888664 455778899999999999999999996 555443 789999999999888885421
Q ss_pred CccccCCCCCccceEEEecCCCCCCCCCCCCCCcccccccccCCccCCCCCCCCcceEEecCCCCcccchhhhcccccCC
Q 006651 497 ASFARDTGGCSTSMDILIPAGFHGGPRTRNGGPSGIIERWRSGGCCDCGGWDLGCPLTVLGTRLSKKEAIYQADMHDECN 576 (637)
Q Consensus 497 ~~~~~~tg~~~~s~tVViP~G~HGlP~~~~G~PSpLI~RWrSGG~CDCGGWD~GC~L~VL~N~~~~~e~~~~a~t~~~~~ 576 (637)
......++.++|||||+|+||+|++++++|||||+||||||+||||||||||||+||.|+++.++.... +.+.++
T Consensus 221 ---~~~~~~~~~s~tVvlP~G~Hg~P~~g~~~PS~LI~RWrSGG~CDCGGWDmgC~L~VL~n~~~~~~~~~~--~~~~~~ 295 (346)
T PF12043_consen 221 ---SLNSNSSSCSTTVVLPSGVHGLPNTGNGGPSSLIDRWRSGGSCDCGGWDMGCPLRVLSNQSQNSKKSSS--SKESSH 295 (346)
T ss_pred ---cccCCCCCccEEEEecCCccCCCCCCCCCChHHHHHhhhCCCcCCCCcccCCCeEEeCCCCcccccccc--ccccCC
Confidence 123456778999999999999999999999999999999999999999999999999999988764433 345789
Q ss_pred ceeEEeccccCCCCeEEEEeecCceEEEEEcCCCchhHHHHHHHhhhccCC
Q 006651 577 SFDLFVNGSKQGAPMLRMVNVRDDLYFIHFHSTLSALQSFSIAVASIHSQS 627 (637)
Q Consensus 577 ~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF~s~LS~LQAFSIcIA~lh~q~ 627 (637)
+||||+||++++.|+|+|++|+||+|+|||+++||+|||||||||+||||+
T Consensus 296 ~feLf~QG~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~~~ 346 (346)
T PF12043_consen 296 PFELFVQGSKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHSQK 346 (346)
T ss_pred ceeeeecccccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeeccC
Confidence 999999999998899999999999999999999999999999999999985
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=99.69 E-value=5.9e-16 Score=154.85 Aligned_cols=108 Identities=24% Similarity=0.355 Sum_probs=75.2
Q ss_pred CccceEEEecCCCCCCCCC--------CCCCCcccccccccCCccCCCCCCCCcceEEecCCCCc-ccchhhh-------
Q 006651 506 CSTSMDILIPAGFHGGPRT--------RNGGPSGIIERWRSGGCCDCGGWDLGCPLTVLGTRLSK-KEAIYQA------- 569 (637)
Q Consensus 506 ~~~s~tVViP~G~HGlP~~--------~~G~PSpLI~RWrSGG~CDCGGWD~GC~L~VL~N~~~~-~e~~~~a------- 569 (637)
-||+|+|+||.=.-..... .+.....++.||..+ ..-.+++|.|+.|. ++ ..++
T Consensus 122 GPRkM~v~ip~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---------~~~~~~~l~~k~P~w~~-~~~~~~l~F~g 191 (246)
T PF01167_consen 122 GPRKMTVVIPSIPSSGQESGGRVPFQPLNQEKDSLLSRFQNK---------KKDELIVLKNKPPRWNE-ELQSYVLNFNG 191 (246)
T ss_dssp SSEEEEEEEE-B-TTS-----B-----SS-CCCSHHHHHHCT----------TTSEEEEEE---EEET-TTTEEEEEETT
T ss_pred CCcEEEEEecCCCccccccceeeeeecccccccccccccccc---------CCcceEEEecCCCcEec-cCCeEEeccCC
Confidence 4799999999833322200 011233467777664 22478999999887 43 2222
Q ss_pred -cccccCCceeEEeccccCCCCeEEEEeecCceEEEEEcCCCchhHHHHHHHhhhc
Q 006651 570 -DMHDECNSFDLFVNGSKQGAPMLRMVNVRDDLYFIHFHSTLSALQSFSIAVASIH 624 (637)
Q Consensus 570 -~t~~~~~~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF~s~LS~LQAFSIcIA~lh 624 (637)
+++++.|+|+|+. ..+++..+|+|+.++++.|+|||++||||||||+||||.|+
T Consensus 192 Rv~~~SvKNFql~~-~~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 192 RVTVASVKNFQLVH-PSDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp SECC-BTTEEEEEB-TTBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred eEeccccceeEEEc-cCCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 6889999999988 46678899999999999999999999999999999999885
No 3
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=99.64 E-value=4.7e-15 Score=154.77 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=86.4
Q ss_pred ccceEEEecCCCCCCCCCC------CCCCcccccccccCCccCCCCCCCCcceEEecCCCCc-ccchhhh--------cc
Q 006651 507 STSMDILIPAGFHGGPRTR------NGGPSGIIERWRSGGCCDCGGWDLGCPLTVLGTRLSK-KEAIYQA--------DM 571 (637)
Q Consensus 507 ~~s~tVViP~G~HGlP~~~------~G~PSpLI~RWrSGG~CDCGGWD~GC~L~VL~N~~~~-~e~~~~a--------~t 571 (637)
||+|+||+|+=--..|... +-.| .++.||.... -=+|+||.|+.|. ++ +.+. +|
T Consensus 229 PRrM~~im~~i~~s~~~~~v~~q~~~~~~-~~l~r~~~k~---------~e~~lvL~NK~P~wne-~~q~~~LNF~GRVT 297 (355)
T KOG2502|consen 229 PRRMTVIMPGISPSAPGGRVPVQPENDHP-SLLFRSQNKD---------KEGLLVLKNKTPRWNE-ETQSYCLNFHGRVT 297 (355)
T ss_pred CceeEEeccCCCCCCCCCccccccccccc-chhhhccccC---------cccceEeecCCCcccc-ccceEEEecCCeEE
Confidence 8999999997332222111 1112 3899999874 3679999999998 55 3322 79
Q ss_pred cccCCceeEEeccccCCCCeEEEEeecCceEEEEEcCCCchhHHHHHHHhhhccC
Q 006651 572 HDECNSFDLFVNGSKQGAPMLRMVNVRDDLYFIHFHSTLSALQSFSIAVASIHSQ 626 (637)
Q Consensus 572 ~~~~~~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF~s~LS~LQAFSIcIA~lh~q 626 (637)
++++|+|||+. ....+..+|+|++|+++.|++||+-|||++|||+||++.|++.
T Consensus 298 ~ASVKNFQLv~-~~~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtK 351 (355)
T KOG2502|consen 298 QASVKNFQLVH-ALDPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTK 351 (355)
T ss_pred EeeecceEEec-cCCCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhcccc
Confidence 99999999999 4466889999999999999999999999999999999999986
No 4
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=97.03 E-value=0.00049 Score=76.16 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=61.5
Q ss_pred cCCcc--CCCCCCCCcceEEecCCCCc-ccchhhh--------cccccCCceeEEeccccCCCCeEEEEeecCceEEEEE
Q 006651 538 SGGCC--DCGGWDLGCPLTVLGTRLSK-KEAIYQA--------DMHDECNSFDLFVNGSKQGAPMLRMVNVRDDLYFIHF 606 (637)
Q Consensus 538 SGG~C--DCGGWD~GC~L~VL~N~~~~-~e~~~~a--------~t~~~~~~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF 606 (637)
++..| -|-.-| |.+-|+.|+++- || ..+. +|+++-++||+=..| .-+++|++++.+.|++||
T Consensus 471 s~a~c~~as~~~d--~R~~vmtnK~p~wne-~tqVyqlDfgGrVtqesakNfQIel~g----kQvmqFgRidg~aytldf 543 (565)
T KOG2503|consen 471 SQAMCSYASSVVD--ARCEVMTNKPPAWNE-HTQVYQLDFGGRVTQESAKNFQIELFG----KQVMQFGRIDGPAYTLDF 543 (565)
T ss_pred ccchhcccccccc--ceEEEeecCCccccc-cceEEEeccCCccchhhhccceEeecc----hhhheeccccCCcccCCC
Confidence 34456 444333 667999999877 66 3332 688899999865532 357899999999999999
Q ss_pred cCCCchhHHHHHHHhhhc
Q 006651 607 HSTLSALQSFSIAVASIH 624 (637)
Q Consensus 607 ~s~LS~LQAFSIcIA~lh 624 (637)
+.+.|++|||++++|-+.
T Consensus 544 qypfSa~QaFavalanvt 561 (565)
T KOG2503|consen 544 QYPFSAGQAFAVALANVT 561 (565)
T ss_pred CCchHHHHHHHHHHhhhh
Confidence 999999999999999764
No 5
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=67.81 E-value=1.3 Score=28.02 Aligned_cols=13 Identities=62% Similarity=1.068 Sum_probs=6.7
Q ss_pred ccceeeccccchh
Q 006651 165 GQWIVGSIMGSKS 177 (637)
Q Consensus 165 ~~~~~~simg~~s 177 (637)
-||-+|.+||-||
T Consensus 2 ~~WAvGh~Mgkks 14 (14)
T PF02044_consen 2 PQWAVGHFMGKKS 14 (14)
T ss_dssp -TCHHHCT-----
T ss_pred CccceeeeeccCC
Confidence 3899999999876
No 6
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=15.55 E-value=2.6e+02 Score=24.12 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=24.1
Q ss_pred CceeEEeccccCCCCeEEEEeecCceEEEEEcCC
Q 006651 576 NSFDLFVNGSKQGAPMLRMVNVRDDLYFIHFHST 609 (637)
Q Consensus 576 ~~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF~s~ 609 (637)
..|+..+.+.+....-.++...++|.|.|.|...
T Consensus 32 ~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~ 65 (93)
T smart00557 32 GELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPT 65 (93)
T ss_pred CcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeC
Confidence 4677777666544455578888888888888654
No 7
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=14.94 E-value=84 Score=32.37 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=36.2
Q ss_pred CCccceeeccccchhhhhccCcchhhccccccCCCccceeeeccccccccccccCCCCC
Q 006651 163 PAGQWIVGSIMGSKSMINILKSPLLSKLGKLDGDGNFRRTSVNDVKGSISYDFMKSPGG 221 (637)
Q Consensus 163 pa~~~~~~simg~~smvn~~~sp~~~~~g~~~~~~~~~~~t~sd~~~~i~~~~~~sp~~ 221 (637)
+.|.| | -|||.+||+=+....+- ..+..++.+++..|...||-+=+.....
T Consensus 59 ~GEs~--d-YiGS~R~vyDm~~~~f~-----~~~~~~~~i~~~~I~~~IElgqvg~~~~ 109 (234)
T PF05450_consen 59 NGESF--D-YIGSSRFVYDMQNGNFP-----SDSLQFQPISLDNIDSVIELGQVGLSNS 109 (234)
T ss_pred cCccc--c-ccchHHHHHHHHcCcCc-----ccccccccccHHHCCEEEEeeccCCCCC
Confidence 35655 2 57999999987665554 3345567789999999998877755543
No 8
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=11.32 E-value=95 Score=25.86 Aligned_cols=15 Identities=47% Similarity=1.150 Sum_probs=8.6
Q ss_pred cccccccc-CCccCCC
Q 006651 531 GIIERWRS-GGCCDCG 545 (637)
Q Consensus 531 pLI~RWrS-GG~CDCG 545 (637)
.+++..+. ||.|||.
T Consensus 34 ~vl~~l~~nGg~CDCE 49 (53)
T PF10905_consen 34 DVLEWLRENGGYCDCE 49 (53)
T ss_pred HHHHHHHHcCCCccee
Confidence 34444433 6679995
No 9
>PF12772 GHBP: Growth hormone receptor binding
Probab=11.01 E-value=1.9e+02 Score=31.47 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=33.4
Q ss_pred ccccCCcccCCCceEeCCCccceeeccccchhhhhccCcchhhccccccCCCccceeeeccccccc
Q 006651 146 FIFECPMITGSESVVISPAGQWIVGSIMGSKSMINILKSPLLSKLGKLDGDGNFRRTSVNDVKGSI 211 (637)
Q Consensus 146 ~~~~~p~~~~~g~vvi~pa~~~~~~simg~~smvn~~~sp~~~~~g~~~~~~~~~~~t~sd~~~~i 211 (637)
-|.| .+..|+|||||-.|--.|.+..+.. -.+.-..+|+-.-+-++| .-.+-.|+++.|
T Consensus 148 QVSd---VtPaG~VVLSPgQq~k~~~~~q~~~---~~e~~~~~q~~~v~~~d~-aY~~E~dAkk~~ 206 (295)
T PF12772_consen 148 QVSD---VTPAGSVVLSPGQQNKAGESSQCDE---HPEKKKQCQLNVVDPMDN-AYFCESDAKKCS 206 (295)
T ss_pred Hhcc---cccCCceEeCccccccccccccccc---cccccchhhhhcccccCC-ceeecchhhccc
Confidence 3556 7889999999998888886533332 112222223222222222 335666777776
No 10
>KOG3224 consensus Uncharacterized conserved protein [Function unknown]
Probab=10.64 E-value=1.9e+02 Score=31.10 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=37.0
Q ss_pred ccceeEEEEEecC-CcceEEEEe-----------CCcceEEEEeecccCCCCC------CCcceEEEEEec
Q 006651 272 STSLGVLQCMWDG-GNPHFVFSI-----------DDRKEVFVANLSNSESGNS------KSMDYMYSFHWR 324 (637)
Q Consensus 272 S~~qglLQl~~Kn-G~P~FeFsl-----------d~p~eV~vA~~~k~~~~dd------~~ln~vYtFHs~ 324 (637)
-..=|.=-+.+++ +.|..+|.. +.|-+|=+|+.|+....+. ..+||+||=|.+
T Consensus 67 eMvFg~N~l~ie~~~~~sieFna~DALk~V~~~~~~~veV~~a~~W~~sr~~~~~~~vi~pfDWTyTT~Yq 137 (278)
T KOG3224|consen 67 EMVFGNNYLVIEHKNQPSIEFNALDALKMVGTKPLPPVEVAAAKDWAKSRKKQEEYEVIKPFDWTYTTDYQ 137 (278)
T ss_pred ceeecccEEEEEeCCCCceeecHHHHHHHhccCCCCCeEeehhHHHHHhccchhhhccccCccceEecccc
Confidence 3444444444444 556899974 4578999999998765443 679999998885
Done!