Query 006651
Match_columns 637
No_of_seqs 67 out of 69
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5n_A Tubby-related protein 1 99.8 4.6E-18 1.6E-22 168.9 18.5 102 506-624 127-246 (246)
2 2fim_A Tubby related protein 1 99.8 6.5E-18 2.2E-22 170.3 17.8 104 506-626 151-272 (276)
3 2l0z_A Glycoprotein G2; zinc-b 18.6 52 0.0018 25.4 1.7 22 527-548 9-30 (42)
4 3nis_A E3 ubiquitin-protein li 13.5 39 0.0013 28.8 -0.1 8 539-546 60-67 (82)
5 3ny3_A E3 ubiquitin-protein li 12.9 58 0.002 27.2 0.8 8 539-546 54-61 (75)
6 3f1i_S STAM-1, signal transduc 10.6 1.1E+02 0.0039 26.1 1.9 16 90-105 2-17 (77)
7 2ovs_A L0044, ORF10; global re 10.1 98 0.0033 28.3 1.4 13 597-609 10-22 (118)
8 4eai_A 5'-AMP-activated protei 9.3 3.1E+02 0.011 24.3 4.3 34 591-624 60-102 (106)
9 2qrd_A SNF1-like protein kinas 9.2 2.6E+02 0.0087 25.8 3.8 32 592-623 80-131 (137)
10 3cnk_A Filamin-A; FLNA24, X-RA 8.7 5.2E+02 0.018 20.7 5.2 34 576-609 30-63 (89)
No 1
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=99.78 E-value=4.6e-18 Score=168.86 Aligned_cols=102 Identities=20% Similarity=0.375 Sum_probs=80.8
Q ss_pred CccceEEEecCCCCCCCCCCCCCCc---------ccccccccCCccCCCCCCCCcceEEecCCCCc-ccchhhh------
Q 006651 506 CSTSMDILIPAGFHGGPRTRNGGPS---------GIIERWRSGGCCDCGGWDLGCPLTVLGTRLSK-KEAIYQA------ 569 (637)
Q Consensus 506 ~~~s~tVViP~G~HGlP~~~~G~PS---------pLI~RWrSGG~CDCGGWD~GC~L~VL~N~~~~-~e~~~~a------ 569 (637)
-||.|+|+||+. +.+|++. +|+.||... .+| .+++|.|+.|. ++ ..++
T Consensus 127 gPR~m~v~iP~~------~~~~~~~~~~p~~~~~~~~~~~~~~------~~~---~~~~l~nK~P~w~e-~~~~y~LnF~ 190 (246)
T 3c5n_A 127 GPRRMTVIIPGM------SAENERVPIRPRNASDGLLVRWQNK------TLE---SLIELHNKPPVWND-DSGSYTLNFQ 190 (246)
T ss_dssp -CCCEEEEEECB------CTTSCBCCCCCSSTTSSHHHHHHHT------CCT---TEEEEEECCCEEET-TTTEEECCCT
T ss_pred CCeEEEEEecCc------ccCCCEeeccCCCccccchhhhhcc------CCc---ceEEEeccCCcccc-cCCEEEEecC
Confidence 579999999973 2344443 456677653 122 48899999988 54 3222
Q ss_pred --cccccCCceeEEeccccCCCCeEEEEeecCceEEEEEcCCCchhHHHHHHHhhhc
Q 006651 570 --DMHDECNSFDLFVNGSKQGAPMLRMVNVRDDLYFIHFHSTLSALQSFSIAVASIH 624 (637)
Q Consensus 570 --~t~~~~~~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF~s~LS~LQAFSIcIA~lh 624 (637)
+|++++|+|+|+. ..+++..+|+|++++++.|+|||+.||||||||+||||.|+
T Consensus 191 GRvt~aSvKNFqLv~-~~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 191 GRVTQASVKNFQIVH-ADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp TSCCBCCTTCEEEEB-TTBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred CeeeccccceEEEEe-cCCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 7899999999998 45677899999999999999999999999999999999875
No 2
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=99.77 E-value=6.5e-18 Score=170.34 Aligned_cols=104 Identities=19% Similarity=0.374 Sum_probs=80.9
Q ss_pred CccceEEEecCCCCCCCCCCCCCCc---------ccccccccCCccCCCCCCCCcceEEecCCCCc-ccchhhh------
Q 006651 506 CSTSMDILIPAGFHGGPRTRNGGPS---------GIIERWRSGGCCDCGGWDLGCPLTVLGTRLSK-KEAIYQA------ 569 (637)
Q Consensus 506 ~~~s~tVViP~G~HGlP~~~~G~PS---------pLI~RWrSGG~CDCGGWD~GC~L~VL~N~~~~-~e~~~~a------ 569 (637)
-||.|+|+||+. +.+|++. +|+.||.+. .+| .+++|.|+.|. ++ ..++
T Consensus 151 gPR~m~v~iP~~------~~~~~~~~~~p~~~~~~ll~~~~~~------~~~---~~~~l~nK~P~wne-~~~~y~LnF~ 214 (276)
T 2fim_A 151 GPRRMTVIIPGM------SAENERVPIRPRNASDGLLVRWQNK------TLE---SLIELHNKPPVWND-DSGSYTLNFQ 214 (276)
T ss_dssp --CCEEEEEECB------CTTSCBCCCCCSSTTCSHHHHHHHT------CCT---TEEEEEECCCEEET-TTTEEECCCT
T ss_pred CCeEEEEEecCc------ccCCCEecccCCCcccccchhhhcc------CCc---ceEeeeccCCcccc-cCCEEEEecC
Confidence 579999999973 2344443 466777764 222 48999999988 44 3222
Q ss_pred --cccccCCceeEEeccccCCCCeEEEEeecCceEEEEEcCCCchhHHHHHHHhhhccC
Q 006651 570 --DMHDECNSFDLFVNGSKQGAPMLRMVNVRDDLYFIHFHSTLSALQSFSIAVASIHSQ 626 (637)
Q Consensus 570 --~t~~~~~~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF~s~LS~LQAFSIcIA~lh~q 626 (637)
+|++++|+|||+. ..+++..+|+|++++++.|+|||+.||||||||+||||.|++.
T Consensus 215 GRVt~aSvKNFQLv~-~~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~K 272 (276)
T 2fim_A 215 GRVTQASVKNFQIVH-ADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGK 272 (276)
T ss_dssp TCCCSCCTTCEEEEC-TTCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC--
T ss_pred CeeeccccceEEEEe-cCCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccc
Confidence 7899999999998 4567789999999999999999999999999999999999875
No 3
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=18.58 E-value=52 Score=25.37 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=18.1
Q ss_pred CCCcccccccccCCccCCCCCC
Q 006651 527 GGPSGIIERWRSGGCCDCGGWD 548 (637)
Q Consensus 527 G~PSpLI~RWrSGG~CDCGGWD 548 (637)
|.|-|+=.|..+-|.|-||-.-
T Consensus 9 Ge~CPkPHRL~~~~~C~CG~y~ 30 (42)
T 2l0z_A 9 GEACPLPHRLNSLGGCRCGKYP 30 (42)
T ss_dssp SSSCCTTSCCCTTSSBTTTTBC
T ss_pred CCCCCCCceecCCceecccccc
Confidence 6677788999999999999543
No 4
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=13.52 E-value=39 Score=28.83 Aligned_cols=8 Identities=63% Similarity=1.676 Sum_probs=6.9
Q ss_pred CCccCCCC
Q 006651 539 GGCCDCGG 546 (637)
Q Consensus 539 GG~CDCGG 546 (637)
||.||||.
T Consensus 60 gG~CDCGD 67 (82)
T 3nis_A 60 SGICDCGD 67 (82)
T ss_dssp EEBCCTTC
T ss_pred CcEecCCC
Confidence 78999994
No 5
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=12.92 E-value=58 Score=27.24 Aligned_cols=8 Identities=75% Similarity=1.946 Sum_probs=7.0
Q ss_pred CCccCCCC
Q 006651 539 GGCCDCGG 546 (637)
Q Consensus 539 GG~CDCGG 546 (637)
||.||||.
T Consensus 54 gG~CDCGD 61 (75)
T 3ny3_A 54 GGFCDCGD 61 (75)
T ss_dssp CBBCCTTC
T ss_pred CCEecCcC
Confidence 78999996
No 6
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=10.63 E-value=1.1e+02 Score=26.06 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHh
Q 006651 90 LDERYLRRCLELIHKS 105 (637)
Q Consensus 90 ~dek~~r~c~~~~h~s 105 (637)
+||.++.+||.++|..
T Consensus 2 IDE~kmd~~L~~l~~a 17 (77)
T 3f1i_S 2 IDEDKMDQLLQMLQST 17 (77)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7999999999999864
No 7
>2ovs_A L0044, ORF10; global regulator protein type three secretion system, gene regulation, ligand binding protein; HET: PG4; 1.90A {Escherichia coli} PDB: 3e3c_A*
Probab=10.06 E-value=98 Score=28.26 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=11.6
Q ss_pred ecCceEEEEEcCC
Q 006651 597 VRDDLYFIHFHST 609 (637)
Q Consensus 597 v~dGlYsVdF~s~ 609 (637)
.+||+|+|.|.++
T Consensus 10 MkDGiY~v~F~t~ 22 (118)
T 2ovs_A 10 MKDGIYSIIFISN 22 (118)
T ss_dssp SCSEEEEEEEEET
T ss_pred hcCcEEEEEEECC
Confidence 4799999999986
No 8
>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker, 5'-AMP-activated protein...; AMPK, transferase; HET: AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A* 4eal_A*
Probab=9.32 E-value=3.1e+02 Score=24.32 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=26.9
Q ss_pred eEEEEeecCceEEEEEcCCCc---------hhHHHHHHHhhhc
Q 006651 591 MLRMVNVRDDLYFIHFHSTLS---------ALQSFSIAVASIH 624 (637)
Q Consensus 591 ~Lsm~~v~dGlYsVdF~s~LS---------~LQAFSIcIA~lh 624 (637)
-+++-.+.+..|.+||+.--. .+.-|=+|-+++-
T Consensus 60 ~lQLYkv~~~~YLLDfq~i~g~~~~~~~~~~~~F~d~ca~li~ 102 (106)
T 4eai_A 60 SLQLYQVDSRTYLLDFRSIDDGGGGGGGSHTIEFFEMCANLIK 102 (106)
T ss_dssp EEEEEECSSSCEEEEEEECCSSCCCSSSCHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcEEEEEEeccCCCCCCCCcCcEeHHHHHHHHHH
Confidence 456667778899999998766 6888889988763
No 9
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Probab=9.24 E-value=2.6e+02 Score=25.80 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=21.7
Q ss_pred EEEEeecCceEEEEEc--------------------CCCchhHHHHHHHhhh
Q 006651 592 LRMVNVRDDLYFIHFH--------------------STLSALQSFSIAVASI 623 (637)
Q Consensus 592 Lsm~~v~dGlYsVdF~--------------------s~LS~LQAFSIcIA~l 623 (637)
+|+-.++++.|.|||+ ..-|++.-|=+|-++|
T Consensus 80 iQLYqv~~~~YLlDFk~~~~~~~~~~~~~~~~~~~~~~~s~~~Fldlca~Li 131 (137)
T 2qrd_A 80 LQLYEVMPGCFMLDVKSNGYKDIYSHPERTADHGMDDLKSSFPFLDLCAMLV 131 (137)
T ss_dssp EEEEEEETTEEEEEEEEEEEEESCC-------------CCCTTHHHHHHHHH
T ss_pred EEEEEecCCcEEEEEEecCCccccccCccccccCCccccccccHHHHHHHHH
Confidence 4555677889999998 3345577777776654
No 10
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=8.70 E-value=5.2e+02 Score=20.71 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=21.9
Q ss_pred CceeEEeccccCCCCeEEEEeecCceEEEEEcCC
Q 006651 576 NSFDLFVNGSKQGAPMLRMVNVRDDLYFIHFHST 609 (637)
Q Consensus 576 ~~FeLf~qG~~q~~P~Lsm~~v~dGlYsVdF~s~ 609 (637)
..|+..++|.+....-.++...+||.|.|.|..+
T Consensus 30 ~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~ 63 (89)
T 3cnk_A 30 NMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLK 63 (89)
T ss_dssp CCEEEEEECSSSCCSEEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEECCCCCceeEEEEECCCCEEEEEEEEC
Confidence 4566666555543334567778888888888654
Done!