BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006652
(637 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 298/647 (46%), Positives = 411/647 (63%), Gaps = 30/647 (4%)
Query: 14 SLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTL 73
+++ FV+ L++LE++AE+ + +L Q +G +L L+ TGL G+ L
Sbjct: 5 TVESFVAQQLELLELERDAEVEERRSWQEHSSLKELQSRGVCLLKLQVSSQCTGLYGQRL 64
Query: 74 LEFQSTKGD---VLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFDDIP 130
+ F+ K VLP++ F + D+V L S L GV+ R+ S+TVAFD+
Sbjct: 65 VTFEPRKLGPVVVLPSNSFTSGDIVGLYDANE---SSQLATGVLTRITQKSVTVAFDESH 121
Query: 131 EEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTVLKK 186
+ LN + RL KLAN+VTY+R+K AL+ L K +GPA+ LI VL G P+ +
Sbjct: 122 DFQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK-YHSGPASSLIDVLLGGSSPSPTTE 180
Query: 187 DIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246
F +N+ LD SQK+A+S AL+ K V ++HGPPGTGKTTTVVEIILQ VK+G KIL C
Sbjct: 181 IPPFTFYNTALDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKILCC 240
Query: 247 AASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMK 306
A SN+AVDN+VERL + R++RLGHPARLL + +LDA + R DN+ + +DIRK++
Sbjct: 241 APSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDID 300
Query: 307 ALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS---- 362
+ GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA S
Sbjct: 301 QVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPL 360
Query: 363 RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRT 422
+ L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S +A GL R+
Sbjct: 361 KLLPENHFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRS 420
Query: 423 LFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS----------GVKRT 472
L ERL + +G MLTVQYRMH+ I W+S+ +Y+ ++ AHPS GV T
Sbjct: 421 LMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADT 480
Query: 473 SSTEPTLLLIDIAGCDMEEKKDEEDSTM--NEGEAEVAMAHAKRLIQSGVHASDIGIITP 530
T LLLID AGC + E DEEDS N GE + H + L+ +GVHA DI +I P
Sbjct: 481 EETSVPLLLIDTAGCGLLE-LDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAP 539
Query: 531 YAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMN 590
Y QV LL+ +S +K +E+ +VDGFQGREKEA+I++ VRSN K EVGFL++ RR+N
Sbjct: 540 YNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRIN 597
Query: 591 VAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 637
VAVTRARR ++CD+ TV++ FLK L++YF EH E + EYL++
Sbjct: 598 VAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/649 (44%), Positives = 413/649 (63%), Gaps = 28/649 (4%)
Query: 11 SAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMG 70
++ +++ FV+ L++LE++AE+ + +L Q +G +L L+ +TGL G
Sbjct: 2 ASSTVESFVAQQLQLLELERDAEVEERRSWQEHSSLRELQSRGVCLLKLQVSSQRTGLYG 61
Query: 71 KTLLEFQSTK---GDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L+ F+ K VLP++ F + D+V L + L GV+ R+ S+TVAFD
Sbjct: 62 QRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNEN---SQLATGVLTRITQKSVTVAFD 118
Query: 128 DIPEEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTV 183
+ + LN + RL KLAN+VTY+R+K AL+ L K +GPA+ LI +L G P+
Sbjct: 119 ESHDLQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK-YHSGPASSLIDILLGSSTPSP 177
Query: 184 LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243
+ +N+ LD SQK+A+S AL+ K + ++HGPPGTGKTTTVVEIILQ VK+G K+
Sbjct: 178 AMEIPPLSFYNTTLDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKV 237
Query: 244 LACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
L CA SNIAVDN+VERL + R++RLGHPARLL V +LDA + R DN+ + +DIR+
Sbjct: 238 LCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRR 297
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS- 362
++ + GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA S
Sbjct: 298 DIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSD 357
Query: 363 ---RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
+ L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S A GL
Sbjct: 358 GPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGL 417
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS----------GV 469
R+L ERLA+ +G V MLTVQYRMH+ IM W+S+ +Y+ + +HPS GV
Sbjct: 418 SRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGV 477
Query: 470 KRTSSTEPTLLLIDIAGCDMEEKKDEED-STMNEGEAEVAMAHAKRLIQSGVHASDIGII 528
T T LLLID AGC + E ++E+ S N GE + H + L+ +GV A DI +I
Sbjct: 478 TDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVI 537
Query: 529 TPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRR 588
PY QV LL+ +S +K +E+ +VDGFQGREKEA++++ VRSN K EVGFL++ RR
Sbjct: 538 APYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRR 595
Query: 589 MNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 637
+NVAVTRARR ++CD+ TV++ FL+ L++YF EH E + EYL++
Sbjct: 596 INVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTAFEYLDD 644
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/649 (44%), Positives = 417/649 (64%), Gaps = 27/649 (4%)
Query: 11 SAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMG 70
++ +++ FV+ L++LE++AE+ + + +L Q +G +L L+ +TGL G
Sbjct: 2 ASAAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYG 61
Query: 71 KTLLEFQSTK---GDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L+ F+ + LP++ F + D+V L + A+ GS L G++ R+ S+TVAFD
Sbjct: 62 RLLVTFEPRRYGSAAALPSNSFTSGDIVGLY-DAANEGS-QLATGILTRVTQKSVTVAFD 119
Query: 128 DIPEEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTV 183
+ + L+ + RL KLAN+VTYRR+K ALI L K +GPA+ LI VLFG P+
Sbjct: 120 ESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKK-YHSGPASSLIEVLFGRSAPSP 178
Query: 184 LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243
+ FN+ LD SQK+A+ ALS K + ++HGPPGTGKTTTVVEIILQ VK+G K+
Sbjct: 179 ASEIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKV 238
Query: 244 LACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
L CA SNIAVDN+VERL + R++RLGHPARLL + + +LDA + R D++ + +DIRK
Sbjct: 239 LCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRK 298
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS- 362
++ + K KT+DK + + E++ L KE ++R++ A+ + + +A+VVL T TGA +
Sbjct: 299 DIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASAD 358
Query: 363 ---RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
+ L + FD+V+IDE AQALE +CWI LLK +CILAGDH QLPPT S +A GL
Sbjct: 359 GPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGL 418
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS----------GV 469
+L ERLA+ YG V LTVQYRMH+ IM W+S +Y ++ AH S GV
Sbjct: 419 SLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGV 478
Query: 470 KRTSSTEPTLLLIDIAGCDMEEKKDE-EDSTMNEGEAEVAMAHAKRLIQSGVHASDIGII 528
T T LLL+D AGC + E ++E E S N GE + H + L+ +GV A DI ++
Sbjct: 479 AATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVV 538
Query: 529 TPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRR 588
+PY QV LL+ +S + +E+ +VDGFQGREKEA+I+S VRSN K EVGFL++ RR
Sbjct: 539 SPYNLQVDLLR--QSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRR 596
Query: 589 MNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 637
+NVAVTRARR ++CD+ TV++ FLK L+EYF +H E + EYL++
Sbjct: 597 INVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDD 645
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 291/649 (44%), Positives = 413/649 (63%), Gaps = 28/649 (4%)
Query: 11 SAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMG 70
++ +++ FV+ L++LE++AE+ + +L Q +G +L L+ +TGL G
Sbjct: 2 ASYTVESFVAQQLQLLELERDAEVEERRSWQEHSSLKELQSRGVCLLKLQVSGQRTGLYG 61
Query: 71 KTLLEFQSTK---GDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L+ F+ K VLP++ F + D+V L S L GV+ R+ S+ VAFD
Sbjct: 62 QRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNE---SSQLATGVLTRITQKSVIVAFD 118
Query: 128 DIPEEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTV 183
+ + LN + RL KLAN+VTY+R+K AL+ L K +GPA+ LI VL G P+
Sbjct: 119 ESHDFQLNLDRENTYRLLKLANDVTYKRLKKALLTLKK-YHSGPASSLIDVLLGGSTPSP 177
Query: 184 LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243
+ +N+ LD SQK+A+S AL+ K V ++HGPPGTGKTTTVVEIILQ VK+G K+
Sbjct: 178 ATEIPPLTFYNTTLDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKV 237
Query: 244 LACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
L CA SNIAVDN+VERL + +++RLGHPARLL V + +LDA + R DN+ + +DIR+
Sbjct: 238 LCCAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRR 297
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS- 362
++ + GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA +
Sbjct: 298 DIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTD 357
Query: 363 ---RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
+ L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S +A GL
Sbjct: 358 GPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGL 417
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS----------GV 469
R+L ERLA+ +G V ML VQYRMH+ I W+S+ +Y+ ++ AHPS GV
Sbjct: 418 SRSLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGV 477
Query: 470 KRTSSTEPTLLLIDIAGCDMEEKKDEED-STMNEGEAEVAMAHAKRLIQSGVHASDIGII 528
T T LLLID AGC + E ++E+ S N GE + H + L+ +GV A DI +I
Sbjct: 478 ADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVI 537
Query: 529 TPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRR 588
PY QV LL+ +S +K +E+ +VDGFQGREKEA+I++ VRSN K EVGFL++ RR
Sbjct: 538 APYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRR 595
Query: 589 MNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 637
+NVAVTRARR ++CD+ TV++ FLK L++YF EH E + EYL++
Sbjct: 596 INVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 251/651 (38%), Positives = 368/651 (56%), Gaps = 55/651 (8%)
Query: 15 LQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLL 74
+Q+F +D +++E+ + S L Q+KG ++NL+ +TG GKT++
Sbjct: 15 IQKFGDREIEFVDEAQKSEVDETEKSIKRFPLSVLQRKGLALINLRIGVVKTGFGGKTII 74
Query: 75 EFQS----TKGDVLPAHKFGTHDVVVLK----------PNKADLGSPALGQGVVYRLKDS 120
+F+ + G+ LPA+ F DVV ++ PN+ D+ +GVV R+ +
Sbjct: 75 DFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISV----EGVVTRVHER 130
Query: 121 SITVAF---DDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFG 177
I+VA +DIP + L + KL N VTY RM+ +++ + + + L L G
Sbjct: 131 HISVALKSEEDIPSSV--TRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRNS-LFYTLIG 187
Query: 178 EQKPTV-----LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEI 232
+K V L DI + FN L+ SQK A+ +++ K + ++HGPPGTGKT T+VEI
Sbjct: 188 RKKADVSIDQKLIGDIKY--FNKELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEI 245
Query: 233 ILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRG 292
I Q V R +IL C ASN+AVDNIV+RL + +VRLGHPARLLP +L+ +LD G
Sbjct: 246 IQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTG 305
Query: 293 DNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADV 352
DN + I +++ K+ KTK+ RREI K +R L K+ RK + V +++ + V
Sbjct: 306 DNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASKV 365
Query: 353 VLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSV 412
V TL GA SR+L FD VIIDEA+QALE CWI LL ++ ILAGDH+QL P VQS
Sbjct: 366 VFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQS- 424
Query: 413 EAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR- 471
K ++FERL GD V L +QYRMHE I + S Y+SK+ KR
Sbjct: 425 ----KRPYISMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRL 480
Query: 472 ---------TSSTEPTLLLIDIAGCDMEEKKDE------EDSTMNEGEAEVAMAHAKRLI 516
T T+ + D G E+ + E +DS N EA++ H L+
Sbjct: 481 LMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLL 540
Query: 517 QSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS 576
++G+ A DI ++TPY AQV L++ L +K +E+ +VD QGREKEAII S+VRSN
Sbjct: 541 EAGLEAKDIAVVTPYNAQVALIRQLLK--EKGIEVEMGSVDKVQGREKEAIIFSLVRSND 598
Query: 577 KKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVS-SDGFLKRLIEYFEEHA 626
+EVGFL+++RR+NVA+TR +R C++ D+ TV + F + +++ EE+A
Sbjct: 599 VREVGFLAEKRRLNVAITRPKRHLCVIGDSNTVKWASEFFHQWVDFLEENA 649
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 240/695 (34%), Positives = 375/695 (53%), Gaps = 89/695 (12%)
Query: 16 QEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLE 75
+E S I E+E +I + + ++ + G I N+ + ++GL+GK +E
Sbjct: 3 KELASKFLSSIKHEREQDIQTTSRLLTTLSIQQLVQNGLAINNIHLENIRSGLIGKLYME 62
Query: 76 F--------QSTKGDVLPAHKFGTHDVVVLKPNKADL----------------GSPALGQ 111
+ +GD+ K G D+V+++P K + G A
Sbjct: 63 LGPNLAVNDKIQRGDI----KVG--DIVLVRPAKTKVNTKTKPKVKKVSEDSNGEQAECS 116
Query: 112 GVVYRLKDSSITVAFD---DIPEEGLNS--PLRLEKLANEVTYRRMKDALIQLSKGVQNG 166
GVVY++ D+ IT+A + D+ S L + K N VTY RM+ + +LS+ +
Sbjct: 117 GVVYKMSDTQITIALEESQDVIATTFYSYSKLYILKTTNVVTYNRMESTMRKLSEI--SS 174
Query: 167 PAAGLIPVLFGEQKPTVLKKDIAF---KPF-NSNLDHSQKDAISKALSSKNVFMLHGPPG 222
P I ++P + + +F K F N NL+ SQK AI+ A+++ ++ ++HGPPG
Sbjct: 175 PIQDKIIQYLVNERPFIPNTN-SFQNIKSFLNPNLNDSQKTAINFAINN-DLTIIHGPPG 232
Query: 223 TGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERL---VPHRVRLVRLGHPARLL 277
TGKT T++E+I Q + + +IL C SNI+VD I+ERL VP+ + L+R+GHPARLL
Sbjct: 233 TGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLTPLVPNNL-LLRIGHPARLL 291
Query: 278 PQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERK 337
+LD +L N+ + DI +E+ L + K K+ R+E E++ L K+ +K
Sbjct: 292 DSNKRHSLD--ILSKKNT-IVKDISQEIDKLIQENKKLKNYKQRKENWNEIKLLRKDLKK 348
Query: 338 RQQLAVTDVIKNADVVLTTLTGAVSRKL-----DNTSF---DLVIIDEAAQALEIACWIA 389
R+ + D+I + +V+TTL G+ SR+L D+ +F D +IIDE +QA+E CWI
Sbjct: 349 REFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIP 408
Query: 390 LL----KGSRCILAGDHLQLPPTVQSVEAEK--KGLGRTLFERLADLYGD-EVTSMLTVQ 442
L+ + + +LAGD+ QLPPT+++ + + L TLF+R+ ++ ++ L VQ
Sbjct: 409 LIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQ 468
Query: 443 YRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPT---------------LLLIDIAGC 487
YRM++ IM + S +YN K+ A + R PT L+ D G
Sbjct: 469 YRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQGD 528
Query: 488 DMEEKKDEED---STMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSK 544
+ +E DE S NEGE + H + L V + IG+I+PY AQV LK L
Sbjct: 529 EFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHD 588
Query: 545 DDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVC 604
+ KL ++E+STVDGFQGREK+ II+S+VRSN K EVGFL + RR+NVA+TR RRQ +V
Sbjct: 589 ELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVG 648
Query: 605 DTETVSSDG--FLKRLIEYFEEHAE--YLSGSEYL 635
+ E + G +LK E+ EE+A+ Y + +YL
Sbjct: 649 NIEVLQRCGNKYLKSWSEWCEENADVRYPNIDDYL 683
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 298 bits (764), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 230/677 (33%), Positives = 356/677 (52%), Gaps = 106/677 (15%)
Query: 18 FVSVMAPLIDLEKEAEISAS----ITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTL 73
+V LI++E+ E+ I G R + G ILNLK L G T+
Sbjct: 17 YVKKFMDLIEIERRCEMDFHKNEIIKLGKKR-----ENVGRAILNLKGKFLGESL-GCTI 70
Query: 74 LEF---QSTKGDVLPAHKFGTHDVVVL---KPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ F + K ++ P DVV++ P ++DL + + G + I VAFD
Sbjct: 71 VRFGRKKPFKTEISPG------DVVLVSKENPLQSDLYANVIYVG------KNFIDVAFD 118
Query: 128 -DIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTVLKK 186
D+P+ +R++ N++T++RMK+AL + ++ + A +I + +KP L++
Sbjct: 119 VDVPKWVYKERVRVDLYVNDITFKRMKEALREFAR--KRDKLAYIILGIEHPEKP--LRE 174
Query: 187 DIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILA 245
DI + ++ NL+ SQK A+ KA+ S++++++HGPPGTGKT T+ E+I+QEVK K+LA
Sbjct: 175 DIKLEFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLA 234
Query: 246 CAASNIAVDNIVERLVPHR--VRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIR- 302
A SNIA DNI+E L+ +++VR+GHP R+ +++ +L + + +R
Sbjct: 235 TADSNIAADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALRE 294
Query: 303 --KEMKALNGKLLK-----------------TKDKNTRREIQKELRTLSKEERKRQQLAV 343
KE+K K LK K K + R I KE + +S E + +
Sbjct: 295 KIKEIKEQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKE-KIVSMAEWIIRNKKI 353
Query: 344 TDVIKN---------------ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWI 388
+I N ADV++ T + A S L FD+++IDE +QA+E +C I
Sbjct: 354 KRIINNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLI 413
Query: 389 ALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEH 448
++KG + I+AGDH QLPPTV S E + L +TLFERL Y E +S+L +QYRM+E
Sbjct: 414 PIVKGRKLIMAGDHKQLPPTVLS---ENEELKKTLFERLIKKYP-EFSSILEIQYRMNEK 469
Query: 449 IMNWSSKQLYNSKIKAHPS----------------GVKRTSSTEPTLLLIDIAGCDMEEK 492
IM + +K YN+K+KA S V R E + I++ G +E K
Sbjct: 470 IMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEG--IERK 527
Query: 493 KDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNME 552
E S N EAE + K+L++ + + +ITPY AQV L+ L + + ++E
Sbjct: 528 DKESPSYYNIEEAEKVLEIVKKLVKYKIPTN---VITPYDAQVRYLRRLFEEHN--IDIE 582
Query: 553 VSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSD 612
V+TVDGFQGRE EAI+IS VR+ K GFL D RR+NVA+TRA+R+ L+ + + D
Sbjct: 583 VNTVDGFQGRENEAIVISFVRT---KNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQD 639
Query: 613 GFLKRLIEYF----EEH 625
+I++ EEH
Sbjct: 640 KVYNEMIKWAKSVEEEH 656
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 233/448 (52%), Gaps = 40/448 (8%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACAASNIAVDN 255
L+ SQ +A+ K++ K + ++ GPPGTGKT T I+ K+G ++L CA SN+AVD
Sbjct: 489 LNASQVNAV-KSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 547
Query: 256 IVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKT 315
+ E++ +++VRL +R + + S ++ L L + + E+ KL +
Sbjct: 548 LAEKISATGLKVVRLCAKSR---EAVSSPVEYLTLHYQVRHLDTSEKSELH----KLQQL 600
Query: 316 KDKNTRREIQKELRTLSKEERKRQQLAVT---DVIKNADVVLTTLTGAVSRKLDNTSFDL 372
KD+ Q EL S +E+K + L ++ ++ADV+ T GA +L N F
Sbjct: 601 KDE------QGELS--SSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQ 652
Query: 373 VIIDEAAQALEIACWIALLKG-SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 431
V+IDE+ QA E C I L+ G + +L GDH QL P + +A + GL ++LFERL L
Sbjct: 653 VLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLG 712
Query: 432 GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS---------TEPTLLLI 482
+ L VQYRMH + + S Y ++ + ++R ++ P +
Sbjct: 713 IKPIR--LQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYV 770
Query: 483 DIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILR 542
+ EE S +N EA ++SGV S IG+ITPY Q +
Sbjct: 771 QLG---QEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYM 827
Query: 543 SKDDKL-----KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRAR 597
+++ L K +EV++VD FQGREK+ II+S VRSN + +GFL+D RR+NVA+TRAR
Sbjct: 828 ARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAR 887
Query: 598 RQCCLVCDTETVSSDGFLKRLIEYFEEH 625
++ + + +S L+ +++EH
Sbjct: 888 YGIVILGNPKVLSKQPLWNGLLTHYKEH 915
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 205 bits (522), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 144/446 (32%), Positives = 231/446 (51%), Gaps = 40/446 (8%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDN 255
L+ SQ AI + LS+ + ++ GPPGTGKT T II K S++L CA SN+AVD
Sbjct: 456 LNASQIAAIKQVLSNP-LSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQ 514
Query: 256 IVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKL--- 312
+ ER+ +++VRL +R + +ES++ S LA + M N +L
Sbjct: 515 LCERIHRTGLKVVRLTAKSR---EDVESSV---------SFLALHEQVRMNTTNKELDGL 562
Query: 313 --LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSF 370
LKT+ + +K + L+++ + ++++NADVV T GA +L F
Sbjct: 563 VKLKTETGELSSQDEKRFKQLTRQAER-------EILQNADVVCCTCVGAGDPRLSKMKF 615
Query: 371 DLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLAD 429
V+IDE+ Q+ E C I L+ G + +L GDH QL P + + +A K GL ++LFERL
Sbjct: 616 RNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVK 675
Query: 430 LYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRT------SSTEPTLLLID 483
L + L VQYRMH + + S Y ++ + +R P ++
Sbjct: 676 LQFTPIR--LKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMF 733
Query: 484 IAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ-VVLLKILR 542
+ EE S +N EA R ++GV +DIG+ITPY Q ++ ++
Sbjct: 734 WSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQ 793
Query: 543 S----KDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARR 598
+ K + + +EV++VD FQGREK+ I++S VRSN + +GFLSD RR+NVA+TRA+
Sbjct: 794 NTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKY 853
Query: 599 QCCLVCDTETVSSDGFLKRLIEYFEE 624
++ + + + L+ +F++
Sbjct: 854 GLVIIGNPKVLCKHELWHHLLVHFKD 879
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 148/451 (32%), Positives = 228/451 (50%), Gaps = 34/451 (7%)
Query: 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVD 254
+L+HSQ A+ K + + + ++ GPPGTGKT T I+ ++G+ +L CA SNIAVD
Sbjct: 476 DLNHSQVYAV-KTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD 534
Query: 255 NIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK--EMKALNGKL 312
+ E++ +++VRL +R A+D+ V +L + IR M L KL
Sbjct: 535 QLTEKIHQTGLKVVRLCAKSR-------EAIDSPV---SFLALHNQIRNMDSMPELQ-KL 583
Query: 313 LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDL 372
+ KD+ E K R ++ A +++ NADV+ T GA +L F
Sbjct: 584 QQLKDETGELSSADE-----KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRS 638
Query: 373 VIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 431
++IDE+ QA E C + ++ G++ IL GDH QL P V +A K GL ++LFERL L
Sbjct: 639 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLG 698
Query: 432 GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS------TEPTLLLIDIA 485
+ L VQYRMH + + S Y ++ + R +P +
Sbjct: 699 IRPIR--LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 756
Query: 486 GCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----VVLLKIL 541
EE S +N EA +L+++G IGIITPY Q V ++
Sbjct: 757 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 816
Query: 542 RSKDDKL-KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQC 600
S KL + +E+++VD FQGREK+ II+S VR+N + +GFL+D RR+NVA+TRAR
Sbjct: 817 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 876
Query: 601 CLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 631
+V + + +S L+ Y++E + G
Sbjct: 877 IIVGNPKALSKQPLWNHLLSYYKEQKALVEG 907
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 148/451 (32%), Positives = 228/451 (50%), Gaps = 34/451 (7%)
Query: 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVD 254
+L+HSQ A+ K + + + ++ GPPGTGKT T I+ ++G+ +L CA SNIAVD
Sbjct: 481 DLNHSQVYAV-KTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD 539
Query: 255 NIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK--EMKALNGKL 312
+ E++ +++VRL +R A+D+ V +L + IR M L KL
Sbjct: 540 QLTEKIHQTGLKVVRLCAKSR-------EAIDSPV---SFLALHNQIRNMDSMPELQ-KL 588
Query: 313 LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDL 372
+ KD+ E K R ++ A +++ NADV+ T GA +L F
Sbjct: 589 QQLKDETGELSSADE-----KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRS 643
Query: 373 VIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 431
++IDE+ QA E C + ++ G++ IL GDH QL P V +A K GL ++LFERL L
Sbjct: 644 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLG 703
Query: 432 GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS------TEPTLLLIDIA 485
+ L VQYRMH + + S Y ++ + R +P +
Sbjct: 704 IRPIR--LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 761
Query: 486 GCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----VVLLKIL 541
EE S +N EA +L+++G IGIITPY Q V ++
Sbjct: 762 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 821
Query: 542 RSKDDKL-KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQC 600
S KL + +E+++VD FQGREK+ II+S VR+N + +GFL+D RR+NVA+TRAR
Sbjct: 822 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 881
Query: 601 CLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 631
+V + + +S L+ Y++E + G
Sbjct: 882 IIVGNPKALSKQPLWNHLLNYYKEQKVLVEG 912
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 228/456 (50%), Gaps = 41/456 (8%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKT---TTVVEIILQEVKRGSKILACAASNIAV 253
L+ SQ A++K L++ + ++ GPPGTGKT + ++ +++ VK K+L C SN+A+
Sbjct: 537 LNESQISAVNKVLTAP-LSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNVAI 595
Query: 254 DNIVERLVPHRVRLVRLGHPAR--LLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGK 311
D + +L +++VRL R + V L QV + D +G+
Sbjct: 596 DQLTGKLHEIGLKVVRLSSKLREEVASPVEHLTLHKQVYKLDQMG------------DGE 643
Query: 312 LLKTKDKNTRREIQKELRTLSKEERKR----QQLAVTDVIKNADVVLTTLTGAVSRKLDN 367
L K R++++ +LS E+ KR +++ +++ ADV+ T GA +L
Sbjct: 644 LGKL------RKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAGDPRLSQ 697
Query: 368 TSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFER 426
F ++IDE+ QA E C I L+ G++ IL GDH QL P + + GL ++LFER
Sbjct: 698 FRFPHILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFER 757
Query: 427 LADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSST-----EPTLLL 481
L L LT+QYRMH + + S Y ++ + S R S + +P +
Sbjct: 758 LISL--GHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPM 815
Query: 482 IDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKIL 541
EE S +N EA + + ++ G IGIITPY Q +
Sbjct: 816 FFFNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSH 875
Query: 542 RSKDDKL-----KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRA 596
K KL K++EV++VD FQGREK+ II+S VRSN + +GFL D RR+NVA+TRA
Sbjct: 876 MQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRA 935
Query: 597 RRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 632
R ++ + + +S D LI +F+ + GS
Sbjct: 936 RFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGS 971
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 173/561 (30%), Positives = 274/561 (48%), Gaps = 73/561 (13%)
Query: 110 GQGVVYRLKDSSITVAFDDI-----------PEEGLNSPLRLEKLANEVTYRRMKDALIQ 158
G+G + RL +S F D P L + E + +Y RM+DAL +
Sbjct: 313 GRGYIVRLPNS-----FQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKK 367
Query: 159 LSKGVQNGPAAGLIPV-LFGEQKPTV-----LKKDIAFKPFNSNLDHSQKDAISKALSSK 212
+ + +G + + G Q + L K+ + F + L+ SQ +A+S L +
Sbjct: 368 FA--IDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNF-AQLNSSQSNAVSHVLQ-R 423
Query: 213 NVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271
+ ++ GPPGTGKT T I+ K +IL CA SN+AVD++ +L +++VRL
Sbjct: 424 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLT 483
Query: 272 HPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTL 331
+R + +ES++ N +L + + + K LLK KD E+ L
Sbjct: 484 AKSR---EDVESSVS-------NLALHNLVGRGAKGELKNLLKLKD---------EVGEL 524
Query: 332 SKEERKRQQLAV----TDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACW 387
S + KR V +++ ADVV T GA ++LD T F V+IDE+ QA E C
Sbjct: 525 SASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLD-TKFRTVLIDESTQASEPECL 583
Query: 388 IALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMH 446
I ++KG++ IL GDH QL P + +A GL ++LFERL L V L VQYRM+
Sbjct: 584 IPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GHVPIRLEVQYRMN 641
Query: 447 EHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPT---------LLLIDIAGCDMEEKKDEED 497
++ + S Y ++ +GV T P + ++ A EE
Sbjct: 642 PYLSEFPSNMFYEGSLQ---NGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGT 698
Query: 498 STMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ-VVLLKILR-----SKDDKLKNM 551
S +N EA +L + GV IG+ITPY Q +L+ ++ KD +K +
Sbjct: 699 SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIK-V 757
Query: 552 EVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSS 611
EV++VD FQGREK+ II+S VR+N ++ +GFL D RR+NV +TRA+ ++ + +++
Sbjct: 758 EVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLAR 817
Query: 612 DGFLKRLIEYFEEHAEYLSGS 632
+ L+ +F E + G+
Sbjct: 818 NTLWNHLLIHFREKGCLVEGT 838
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 144/471 (30%), Positives = 234/471 (49%), Gaps = 34/471 (7%)
Query: 174 VLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII 233
VLF +P + P +L+ SQ A+ AL + + ++ GPPGTGKT T I+
Sbjct: 434 VLFRGPQPKLFSA-----PHLPDLNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIV 487
Query: 234 LQEVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRG 292
Q VK G +L CA SN AVD + E++ +++VR+ +R + ++S + L
Sbjct: 488 YQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSR---EAIDSPVSFLALHN 544
Query: 293 DNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADV 352
++ ++ E+K KL + KD+ E K R ++ A +++ ADV
Sbjct: 545 QIRNMETN--SELK----KLQQLKDETGELSSADE-----KRYRNLKRAAENQLLEAADV 593
Query: 353 VLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQS 411
+ T GA +L F ++IDE+ Q+ E C + ++ G++ IL GDH QL P V
Sbjct: 594 ICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMC 653
Query: 412 VEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR 471
+A + GL ++LFERL L L VQYRMH + + S Y ++ R
Sbjct: 654 KKAARAGLSQSLFERLVVLGIRPFR--LEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDR 711
Query: 472 T-----SSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIG 526
+P + + EE S +N EA R +++G+ IG
Sbjct: 712 RLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIG 771
Query: 527 IITPYAAQ----VVLLKILRSKDDKL-KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG 581
IITPY Q V ++ S +L + +E+++VD FQGREK+ II+S VRSN ++ +G
Sbjct: 772 IITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIG 831
Query: 582 FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 632
FL+D RR+NVA+TRA+ +V + + ++ L+ ++++ + GS
Sbjct: 832 FLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGS 882
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 253/510 (49%), Gaps = 94/510 (18%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII---LQEVKR-------------- 239
++ Q AI AL + ++ GPPGTGKT T++ II L ++ R
Sbjct: 1130 VNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTE 1189
Query: 240 -GSKILACAASNIAVDNIVERL------------VPHRVRLVRLGHPARLLPQV----LE 282
+IL CA SN AVD ++ RL +P R+VR+G+P + V LE
Sbjct: 1190 SKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIP---RVVRIGNPETINVSVRDLSLE 1246
Query: 283 SALDAQVLRGDNSSL-------------------------------ASDIRKEMKALNGK 311
+ Q+L + ++ A D+ ++ K+L GK
Sbjct: 1247 YQTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQIDVARDVAEDTKSL-GK 1305
Query: 312 LLKTK--DKNTRREIQKELRTLSKEERKRQQL----AVTDVIKNADVVLTTLTGAVSRKL 365
L+ K +KN + +EL++ S + K L A ++K ADVV TL+G+ +
Sbjct: 1306 ELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLV 1365
Query: 366 DNTS--FDLVIIDEAAQALEIACWIALLKGS-RCILAGDHLQLPPTVQSVEAEKKGLGRT 422
++S F VIIDEAAQA+E+ I L G+ +CIL GD QLPPTV S +A ++
Sbjct: 1366 AHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQS 1425
Query: 423 LFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS---TEPTL 479
LF R+ + +++ +L++QYRMH I ++ SK+ Y+S+++ + ++T P
Sbjct: 1426 LFVRIQKNFSNQMC-LLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKF 1484
Query: 480 L---LIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHAS---DIGIITPYAA 533
L D+ G +E+ ST N E E + L+ + IG+ITPY +
Sbjct: 1485 TQYRLFDVRG---KERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRS 1541
Query: 534 QV-VLLKILRSKDDK--LKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMN 590
Q+ L + + K K + +++ TVDGFQG+EK+ I S V+S SK +GFL D RR+N
Sbjct: 1542 QLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLN 1601
Query: 591 VAVTRARRQCCLVCDTETVSSDGFLKRLIE 620
VA+TRAR ++ + ET+ +D L++
Sbjct: 1602 VALTRARSSLLIIGNMETLKTDDLWGSLVD 1631
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 141/459 (30%), Positives = 232/459 (50%), Gaps = 44/459 (9%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII-----LQEVKRGSK--ILACAAS 249
L+ SQ +A+ +A+ SK + ++ GPPGTGKT T ++ +Q KR S +L CA S
Sbjct: 393 LNASQSEAV-RAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPS 451
Query: 250 NIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGD--NSSLASDIRKEMKA 307
N+AVD + E++ +R+VR+ +R + +ES++ L N ++++
Sbjct: 452 NVAVDQLAEKIHRTGLRVVRVAAKSR---EDIESSVSFLSLHEQIKNYKFNPELQR---- 504
Query: 308 LNGKLLKTKDKNTRREIQ--KELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKL 365
LLK + +N IQ K+LR L K ++++ A V+ T GA R++
Sbjct: 505 ----LLKLRSENNELSIQDEKKLRILVAAAEK-------ELLRAAHVICCTCVGAGDRRI 553
Query: 366 DNTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLF 424
F V+IDEA QA E C I L+ G++ +L GDH QL P V + + L ++LF
Sbjct: 554 SKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLF 613
Query: 425 ERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS------TEPT 478
ERL L L VQYRMH + + S Y ++ + +R + +P
Sbjct: 614 ERLIILGNSPFR--LVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQPD 671
Query: 479 LLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ-VVL 537
L+ A EE S +N EA ++S V IGI+TPY Q +
Sbjct: 672 SPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYI 731
Query: 538 LKILRS----KDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAV 593
++ +++ + D K +EV++VD FQGREK+ II+S VRS+ + +GF++D RR+NVA+
Sbjct: 732 VQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVAL 791
Query: 594 TRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 632
TRA+ ++ + + ++ + + +E + G+
Sbjct: 792 TRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGT 830
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 182/640 (28%), Positives = 291/640 (45%), Gaps = 66/640 (10%)
Query: 17 EFVSVMAPLIDLE-------KEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLM 69
++ ++ PL+ LE KE++ +IT L+ KK L D+ LM
Sbjct: 283 QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLN---KKRIAYFTLPKTDSDMRLM 339
Query: 70 --GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L + KGD+ P K H V+ P+ + G + L+ S A
Sbjct: 340 QGDEICLRY---KGDLAPLWKGIGH--VIKVPD-------SYGDEIAIELRTS--VGAPV 385
Query: 128 DIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLI-PVLFGEQKPTVLKK 186
+IP +++ + ++ RM+ AL + V +G I L G + V K
Sbjct: 386 EIPHN-----YQVDFVWKSTSFDRMQSALKTFA--VDETSVSGYIYHKLLGHEVEDVTIK 438
Query: 187 DIAFKPFNSN----LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS- 241
K F +N L+HSQ A+ L + + ++ GPPGTGKT T I+ ++G+
Sbjct: 439 CQLPKRFTANGLPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSRQGNG 497
Query: 242 KILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDI 301
+L CA SNIAVD + E++ +++VRL +R + +ES + L S++ S
Sbjct: 498 PVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSR---EAIESPVSFLALHNQISNMDS-- 552
Query: 302 RKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV 361
M L KL + KD+ E K R ++ A +++ NADV+ T A
Sbjct: 553 ---MPELQ-KLQQLKDETGELSSADE-----KRYRALKRTAERELLMNADVIWCTCVRAG 603
Query: 362 SRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGR 421
+L F ++IDE+ QA E C + G++ ++ G+ V +A K GL +
Sbjct: 604 DPRLAKMQFRSILIDESTQATEPKCIGPVELGAKQLILGEITASWSCVMCKKAAKAGLSQ 663
Query: 422 TLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS------T 475
+LFERL L + L VQYRMH + + S Y ++ + R
Sbjct: 664 SLFERLVVLGIRPIR--LQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWP 721
Query: 476 EPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ- 534
+P + EE S +N EA RL+++G IGIITPY Q
Sbjct: 722 QPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR 781
Query: 535 ---VVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNV 591
V ++ S KL +E+++VD FQGREK+ II+S VR+N + +GFL+D RR+NV
Sbjct: 782 SYLVQYMQFSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV 841
Query: 592 AVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 631
A+TRA+ +V + + +S L+ ++E + G
Sbjct: 842 ALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEG 881
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 223/447 (49%), Gaps = 45/447 (10%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACAASNIAVDN 255
L+ SQ A+ + L+ + + ++ GPPGTGKT I+ V++ +L C+ SNIAVD+
Sbjct: 446 LNSSQMQAVKQVLT-RPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDH 504
Query: 256 IVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNG----K 311
+ E++ +++VRL +R + L Q ++K + G K
Sbjct: 505 LAEKIHKTGLKVVRLCARSREHSETTVPYLTLQ--------------HQLKVMGGAELQK 550
Query: 312 LLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFD 371
L++ KD+ E + +LR + + K +L + ADV+ T + A +L
Sbjct: 551 LIQLKDEAGELEFKDDLRYMQLKRVKEHEL-----LAAADVICCTCSSAADARLSKIRTR 605
Query: 372 LVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 430
V+IDE+ QA E +++++G R +L GDH QL P V +A GL ++LFERL L
Sbjct: 606 TVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLV-L 664
Query: 431 YGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKA-------HPSGV--KRTSSTEPTLLL 481
G L VQYRMH + + S Y+ ++ H +GV +P
Sbjct: 665 LGIR-PFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFW 723
Query: 482 IDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----VVL 537
+G EE S +N EA +LI++GV IG+IT Y Q V
Sbjct: 724 -HCSGS--EELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNY 780
Query: 538 LKILRSKDDKL-KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRA 596
+ + + KL +N+E+++VD FQGREK+ II++ VRSN +GFLSD RR+NVA+TRA
Sbjct: 781 MHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRA 840
Query: 597 RRQCCLVCDTETVSSDGFLKRLIEYFE 623
+ LV + + ++ LI +++
Sbjct: 841 KYGLVLVGNAKVLARHDLWHELINHYK 867
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 168/577 (29%), Positives = 268/577 (46%), Gaps = 96/577 (16%)
Query: 128 DIPEEGLNSPLRLEKLANEVTYRRMKDAL-----IQLSKGVQNGPAAGLIPVLFGEQKPT 182
D+ E N +KL N T R AL + LS+ + + L ++K
Sbjct: 1205 DLQEYAPNIRFTAQKLFNATTSLREFAALKSLRHLPLSQRILDANVTRLPSNFTDDKKQK 1264
Query: 183 VLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII---LQEVKR 239
++K + ++ Q AI + + ++ GPPGTGKT T++ +I L +
Sbjct: 1265 IMK--------SYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQ 1316
Query: 240 G--------------SKILACAASNIAVDNIVERL---------VPHRVRLVRLGHPARL 276
G +KIL CA SN A+D I+ R+ + +++R+G +
Sbjct: 1317 GLQFNVPGQTRKTSKNKILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIRVGFGDSI 1376
Query: 277 LPQVLESALDAQVLR---------GDNSSLASDIRKEMKALNGKL---------LKTKDK 318
E L+ Q+++ ++ +SD RK+ ++ K ++ K
Sbjct: 1377 SVHAKEFTLEEQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGK 1436
Query: 319 NTR------REIQKELRTLSKE-----ERKRQQLAVTDVIKN---------ADVVLTTLT 358
N+ REI K+ L + ER+R DV+K AD+V TL+
Sbjct: 1437 NSSILEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLS 1496
Query: 359 GAVSRKLDNT--SFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAE 415
+ L N +F VIIDEAAQA+E++ I L G C++ GD QLPPTV S +
Sbjct: 1497 ASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSA 1556
Query: 416 KKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTS-- 473
K G ++L+ R+ + +E +L++QYRM+ I + SK YNSK+ P+ TS
Sbjct: 1557 KFGYSQSLYVRMFKQH-NESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRP 1615
Query: 474 -STEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHAS---DIGIIT 529
+P L + E S N EA + +RLIQ ++ IG++T
Sbjct: 1616 WHEDPQLGIYRFFNVHGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVT 1675
Query: 530 PYAAQVVLLKILRSKDDK------LKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFL 583
PY +QV + LRS+ + K++++ TVDGFQG+EK+ II S VRS+ +GFL
Sbjct: 1676 PYRSQV---QQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFL 1732
Query: 584 SDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIE 620
D RR+NVA+TRA+ +V +++ + + LIE
Sbjct: 1733 QDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIE 1769
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 167/522 (31%), Positives = 230/522 (44%), Gaps = 92/522 (17%)
Query: 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIIL----------------QE 236
FN NL+ SQK+AI LS K+ ++ GPPGTGKT T++ I+ E
Sbjct: 254 FNENLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPARVQSKGTDHE 313
Query: 237 VKRGSKI--------LACAASNIAVDNIVERLVPH--------------RVRLVRLGHPA 274
VKRG ++ A+ I N + ++P + +V
Sbjct: 314 VKRGIQMTIQEKYNHWGRASPWILGVNPRDAIMPEDGDDGFFPTSGNELKPEVVNASRKY 373
Query: 275 RLLPQVL---ESALDAQVLRGDNSSLASDIRKE-MKALNGKLLKTKDKNTRREIQKELRT 330
RL V SALD VLR L+S +R E + K+++ K L
Sbjct: 374 RLRVLVCAPSNSALDEIVLR----LLSSGLRDENAQTYTPKIVRIGLKAHHSVASVSLDH 429
Query: 331 LSKEER------KRQQLAVTD-------VIKNADVVLTTLTGAVSRKL--DNTSFDLVII 375
L ++R +Q TD +++ A +V TL+ + S L N FD+VII
Sbjct: 430 LVAQKRGSAIDKPKQGTTGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVII 489
Query: 376 DEAAQALEIACWIALLKGSRC---ILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 432
DEAAQA+E A I L +RC L GD QLP TV S A+ G G ++FERL
Sbjct: 490 DEAAQAVEPATLIPL--ATRCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQK--A 545
Query: 433 DEVTSMLTVQYRMHEHIMNWSSKQLY------NSKIKAHPSGVKRTSSTEPTLLLIDIAG 486
ML QYRMH I ++ SKQ Y S I+A + DI
Sbjct: 546 GYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFGPFCFFDIHE 605
Query: 487 CDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVH---ASDIGIITPYAAQVVLLKILRS 543
+ S +N E E + RL+ +S + II+PY QV K
Sbjct: 606 GKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFK---- 661
Query: 544 KDDKLKNM---------EVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVT 594
D+ K M +++TVDGFQGREK+ I S VR+N ++GFLS+ RRMNV +T
Sbjct: 662 --DRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGIT 719
Query: 595 RARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLN 636
RA+ +V T+ SD K LIE E+ S+ LN
Sbjct: 720 RAKSSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVSKPLN 761
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 168/593 (28%), Positives = 271/593 (45%), Gaps = 102/593 (17%)
Query: 71 KTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD--- 127
+ L FQ G V PA + D VV+ + L AL G + +KD +IT D
Sbjct: 497 QYLHSFQRRSGSV-PATNLASGDRVVVSGEERFL---ALSTGYIKEVKDENITCILDRSL 552
Query: 128 -DIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAA-GLIPVLFGEQKPTVLK 185
+PE+ L +L +E ++ L LS+ ++N + L ++ KP ++
Sbjct: 553 VKLPED------LLFRLDHEEGGGGLEFHLGNLSRLMENSSVSEKLRKLIIDFSKPNFVQ 606
Query: 186 KDIAFKPFNS---------NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236
+ P ++ L+ QK A+ + L SK+ ++ G PGTGKTTT+ ++
Sbjct: 607 HLSSILPPDAKDIVASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRIL 666
Query: 237 VKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSS 296
G +L + ++ AVDNI+ +L +V +RLG +L P V E + + ++ +
Sbjct: 667 YACGFSVLLTSYTHSAVDNILLKLKKFQVGFLRLGRTQKLHPDVQEFS-EEEICKA---- 721
Query: 297 LASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTT 356
K +++LS A+ ++ + VV TT
Sbjct: 722 -----------------------------KSIKSLS---------ALEELYNSQPVVATT 743
Query: 357 LTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEK 416
G FD I+DEA+Q + C L R +L GDH QLPP V+S EA +
Sbjct: 744 CMGVNHPIFTRRRFDFCIVDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAEARE 803
Query: 417 KGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTE 476
G+ +LF+RL E LTVQYRM+ IM S+K +Y +++ V
Sbjct: 804 LGMSESLFKRLER--NQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQL 861
Query: 477 PTL--LLIDIAG-------------------CDMEEKK------DEEDSTMNEGEAEVAM 509
P + LL+++ C + +K +E+ N EA++
Sbjct: 862 PHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVF 921
Query: 510 AHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKL--KNMEVSTVDGFQGREKEAI 567
K +++G SDIGII PY Q LK++ + + L +EV+TVD +QGR+K I
Sbjct: 922 HLTKLYLKAGCRPSDIGIIAPYRQQ---LKMISNYFNSLSASAVEVNTVDKYQGRDKSVI 978
Query: 568 IISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLI 619
I+S VRSN ++G L D RR+NVA+TRA+ + ++ T++ L++LI
Sbjct: 979 IVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLI 1031
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 225/461 (48%), Gaps = 79/461 (17%)
Query: 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAV 253
++ L+ +QK+AI K + +++ ++ G PGTGKTT + EII V G ++L + ++ AV
Sbjct: 1049 DTTLNLNQKEAIDKVMRAEDYALILGMPGTGKTTVIAEIIKILVSEGKRVLLTSYTHSAV 1108
Query: 254 DNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLL 313
DNI+ +L + ++RLG ++ P D Q + +S+ K+ N L
Sbjct: 1109 DNILIKLRNTNISIMRLGMKHKVHP-------DTQKYVPNYASV--------KSYNDYLS 1153
Query: 314 KTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGA--VSRKLDNTSFD 371
K I + VV TT G + L+ FD
Sbjct: 1154 K--------------------------------INSTSVVATTCLGINDILFTLNEKDFD 1181
Query: 372 LVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 431
VI+DEA+Q L G+R I+ GDH QLPP V++ A GL +LF+ + +
Sbjct: 1182 YVILDEASQISMPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKH 1241
Query: 432 GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKA-------------HPSGVKRTSST--- 475
+ V LT+QYRM I+ S+ +Y++K+K P + R +
Sbjct: 1242 PESVAE-LTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESAN 1300
Query: 476 ---------EPT--LLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASD 524
EPT ++ ++ C ++ E+D+ N GEAE+ + + ++ SGV D
Sbjct: 1301 SKQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCED 1360
Query: 525 IGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG-FL 583
IG++T Y AQ+ LLK + +K + +E+ T D FQGR+K+ IIISMVR NS+ G L
Sbjct: 1361 IGVMTLYRAQLRLLKKIFNK-NVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALL 1419
Query: 584 SDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEE 624
+ RR+NVA+TRA+ + ++ T+ S +K + EE
Sbjct: 1420 KELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIKSFVNLLEE 1460
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 151/530 (28%), Positives = 245/530 (46%), Gaps = 91/530 (17%)
Query: 109 LGQGVVYRLK----DSSITVAFDDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQ 164
L + +RL D SI V F+++ + +SP+ EKL N + + LS
Sbjct: 523 LPESTTFRLDHEEGDCSIGVPFENLSKLMKDSPVS-EKLRNLIIDFHKPRFIQHLS---- 577
Query: 165 NGPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTG 224
++P E ++LK L+ QK A+ + L S++ ++ G PGTG
Sbjct: 578 -----SVLPPEAKEAVASILK----------GLNKPQKQAMKQVLLSRDYTLIVGMPGTG 622
Query: 225 KTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESA 284
KTTT+ ++ G +L + ++ AVDNI+ +L +V +RLG ++ P
Sbjct: 623 KTTTICALVRILSACGFSVLLTSFTHTAVDNILLKLAKFKVGFLRLGRAQKVHP------ 676
Query: 285 LDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEE--RKRQQLA 342
DIRK ++EE R + +
Sbjct: 677 ---------------DIRK---------------------------FTEEEICRSKSIKS 694
Query: 343 VTDV---IKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILA 399
VTD+ + VV T G FD I+DEA+Q + C L R +L
Sbjct: 695 VTDLEELYNSQPVVATACMGINHPIFVQKQFDFCIVDEASQISQPICLGPLFCSKRFVLV 754
Query: 400 GDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYN 459
GDH QLPP VQ+ EA G+ +LF+RL LTVQYRM+ IM+ S+K +Y
Sbjct: 755 GDHQQLPPLVQNSEARDLGMSESLFKRLEQ--NQNAVVQLTVQYRMNSKIMSLSNKLVYE 812
Query: 460 SKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG 519
K++ V ++ P L ++ + D + +E + E + V + ++ +G
Sbjct: 813 GKLECGSEKVSNATANLPNLKMLKLEFADASKTWLKE---VLEPDKPVCFLNTEK---AG 866
Query: 520 VHASDIGIITPYAAQVVLLKILRSKDDKLKN--MEVSTVDGFQGREKEAIIISMVRSNSK 577
SDIGII+PY Q LK++ +LK +EV+T+D +QGR+K II+S VR+++
Sbjct: 867 CRPSDIGIISPYRHQ---LKVITDLMARLKENRVEVNTIDKYQGRDKSIIIVSFVRNSND 923
Query: 578 KEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHA 626
+ +G L D RR+NVA+TRA+ + +V ++ L++L+ + + A
Sbjct: 924 ENLGALLKDWRRLNVAITRAKHKLIMVGCVPSLRRYPPLEKLLCHLQSEA 973
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 165/599 (27%), Positives = 262/599 (43%), Gaps = 106/599 (17%)
Query: 70 GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD-- 127
G L FQ G +PA D ++L + L AL +G V R+ +++T D
Sbjct: 494 GHYLHNFQRKNGP-MPATNLMAGDRIILSGEERKLF--ALSKGYVKRIDTAAVTCLLDRN 550
Query: 128 --DIPEEGL------------NSPL-RLEKLA-NEVTYRRMKDALIQLSKGVQNGPAAGL 171
+PE L N+PL L KL N + +R+++ +I + + +
Sbjct: 551 LSTLPETTLFRLDREEKHGDINTPLGNLSKLMENTDSSKRLRELIIDFKEPQFIAYLSSV 610
Query: 172 IPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE 231
+P + +LK L+ Q+ A+ K L SK+ ++ G PGTGKTTT+
Sbjct: 611 LPHDAKDTVANILK----------GLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICA 660
Query: 232 IILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLR 291
++ G +L + ++ AVDNI+ +L ++ +RLG ++ P +
Sbjct: 661 LVRILSACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI----------- 709
Query: 292 GDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351
K T E+ + LR+++ LA + + N+
Sbjct: 710 -------------------------QKFTEEEMCR-LRSIA-------SLAHLEELYNSH 736
Query: 352 -VVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQ 410
VV TT G +FD I+DEA+Q + C L R +L GDH QLPP V
Sbjct: 737 PVVATTCMGISHPMFSRKTFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHKQLPPLVL 796
Query: 411 SVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVK 470
+ EA G+ +LF+RL + LT+QYRM+ IM+ S+K Y K++ V
Sbjct: 797 NREARALGMSESLFKRLER--NESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVA 854
Query: 471 RTSSTEPTL------LLID------IAG--------CDMEEKK------DEEDSTMNEGE 504
T P L D +AG C + K E N E
Sbjct: 855 NAVITLPNLKDVRLEFYADYSDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTE 914
Query: 505 AEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREK 564
A + + I++G SDIGII PY Q+ + L ++ + +EV+TVD +QGR+K
Sbjct: 915 ARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLLARSS-VGMVEVNTVDKYQGRDK 973
Query: 565 EAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYF 622
I++S VRSN +G L D RR+NVA+TRA+ + L+ ++ L++L ++
Sbjct: 974 SLILVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPLEKLFDHL 1032
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 154/511 (30%), Positives = 245/511 (47%), Gaps = 90/511 (17%)
Query: 196 NLDHSQKDAISKAL-------SSKNVFMLHGPPGTGKTTTVVEII---LQEVKRG----- 240
+ + QK AI A S + ++HGPPGTGK+ T+V ++ L E +R
Sbjct: 1933 DFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDE 1992
Query: 241 --------SKILACAASNIAVDNIVERLVPH----------------RVRLVRLGHPARL 276
+++L CA SN AVD ++++++ + LVRLG +
Sbjct: 1993 NSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSI 2052
Query: 277 LPQVLESALDAQVLRGDNSSLASDI-----RKEMKALNGKLLKTKDKNTR--REIQKEL- 328
+VL+ +LD+QV L S + RKE L + R REIQ++
Sbjct: 2053 NSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRGGREIQRQEL 2112
Query: 329 -RTLSKEERKRQQLAV-------------TDVIKNADVVLTTLTGA-------VSRKLDN 367
+SK ++RQ+LA + +I + ++ TL+ + R
Sbjct: 2113 DENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAFRGQGG 2172
Query: 368 TSFDLVIIDEAAQALEIACWIALL-KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFER 426
F VI+DEA Q+ EI L+ + ++ IL GD QLPPTV S++A++ G +++ R
Sbjct: 2173 VPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 427 LADLYGDEVTS---------MLTVQYRMHEHIMNWSSKQLYNSKIKAH-PSGVKRTSSTE 476
L + V LTVQYRMH I + S +YN +K + + R SS
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDW 2292
Query: 477 P--TLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQS---GVHASDIGIITPY 531
P L+ D+ D E++D DS +N E ++ M K LI+ V +IGIIT Y
Sbjct: 2293 PFQPYLVFDVG--DGSERRDN-DSYINVQEIKLVMEIIK-LIKDKRKDVSFRNIGIITHY 2348
Query: 532 AAQVVLL-KILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS-KKEVGFLSDRRRM 589
AQ ++ K L + D+ EV TVD FQGR+K+ +I++ VR+NS + +GFL+ +R+
Sbjct: 2349 KAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRL 2408
Query: 590 NVAVTRARRQCCLVCDTETVSSDGFLKRLIE 620
NV +TRA+ ++ T+ + +LI+
Sbjct: 2409 NVTITRAKYSLFILGHLRTLMENQHWNQLIQ 2439
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 161/600 (26%), Positives = 261/600 (43%), Gaps = 106/600 (17%)
Query: 70 GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD-- 127
G+ L FQ G +P D ++L + L AL +G V + +++T + D
Sbjct: 494 GQYLHNFQRKNG-AIPITNLMAGDRIILSGEERTLF--ALSRGYVKEINSTTVTCSLDRN 550
Query: 128 --DIPEEGL------------NSPL-RLEKLA-NEVTYRRMKDALIQLSKGVQNGPAAGL 171
+PE L ++PL L KL N ++++D +I + + +
Sbjct: 551 LSGLPESTLFRLDQEEKNCDIDTPLGNLSKLMENTRASQKLRDLIIDFREPQFISYLSSV 610
Query: 172 IPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE 231
+P + +LK L+ Q+ A+ K L SK+ ++ G PGTGKTTT+
Sbjct: 611 LPHEAKDTVACILK----------GLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICT 660
Query: 232 IILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLR 291
++ G +L + ++ AVDNI+ +L ++ +RLG ++ P
Sbjct: 661 LVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQIQKVHP------------- 707
Query: 292 GDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351
DI+K T+++ R + K L L EE QL
Sbjct: 708 --------DIQK----------FTEEEICRSKSIKSLALL--EELYNSQL---------- 737
Query: 352 VVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQS 411
+V TT G +FD I+DEA+Q + C L R +L GDH QLPP V +
Sbjct: 738 IVATTCMGINHPIFSRKTFDFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVLN 797
Query: 412 VEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR 471
EA G+ +LF+RL LTVQYRM+ IM+ S+K Y K++ V
Sbjct: 798 REARALGMSESLFKRLEQ--NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVAN 855
Query: 472 TSSTEPTL----LLIDIAG------------------CDMEEKKDEEDSTMNEG------ 503
P L ++ C + K + +G
Sbjct: 856 AVINLPNFKDVKLELEFYADYSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIM 915
Query: 504 EAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGRE 563
EA++ + I++G SDIGII PY Q+ ++ L ++ + +EV+TVD +QGR+
Sbjct: 916 EAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKVISDLLAQSS-VGMVEVNTVDRYQGRD 974
Query: 564 KEAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYF 622
K +++S VRSN +G L D RR+NVA+TRA+ + L+ ++S L++L+ +
Sbjct: 975 KSIVVVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGCVPSLSRYPPLRKLLNHL 1034
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 238/487 (48%), Gaps = 88/487 (18%)
Query: 196 NLDHSQKDAISKAL-------SSKNVFMLHGPPGTGKTTTVVEII---LQEVKRG----- 240
+ + QK AI A S + ++HGPPGTGK+ T+V ++ L E +R
Sbjct: 1909 DFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDE 1968
Query: 241 --------SKILACAASNIAVDNIVERLVPH----------------RVRLVRLGHPARL 276
+++L CA SN AVD ++++++ + LVRLG +
Sbjct: 1969 NFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSI 2028
Query: 277 LPQVLESALDAQV---LRGDNSSLASDIRKEMKALNGKL---------LKTKDKNTRREI 324
+VL+ +LD+QV ++ D S ++ + + L+ +L + + R+E+
Sbjct: 2029 NTEVLKFSLDSQVNHRMKKDLPSHIQEMLRRKEILDAQLDELSRQRALCRGGREMQRQEL 2088
Query: 325 QKELRTLSKEERK----------RQQLAVTDVIKNADVVLTTLTGA-------VSRKLDN 367
+ + +SKE ++ R Q A +I + V+ TL+ + R
Sbjct: 2089 DEHIAIVSKERQELASKIKEVQGRPQRAQNTIILESHVICCTLSTSGGLLLESAFRGQGG 2148
Query: 368 TSFDLVIIDEAAQALEIACWIALL-KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFER 426
F VI+DEA Q+ E+ L+ + ++ IL GD QLPPTV S++A++ G +++ R
Sbjct: 2149 VPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 427 LADLYGDEVTS---------MLTVQYRMHEHIMNWSSKQLYNSKIKAHP-SGVKRTSSTE 476
L + V LT+QYRMH I + S +YN +K + + R SS
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSSEW 2268
Query: 477 P--TLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQS--GVHASDIGIITPYA 532
P L+ D+ D E++D DS +N E ++ M K + + + +IGIIT Y
Sbjct: 2269 PFQPYLVFDVG--DGSERRDN-DSYINVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYK 2325
Query: 533 AQVVLL-KILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS-KKEVGFLSDRRRMN 590
AQ ++ K L + DK EV TVD FQGR+K+ II++ VR+++ + +GFL+ +R+N
Sbjct: 2326 AQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLN 2385
Query: 591 VAVTRAR 597
V +TRA+
Sbjct: 2386 VTITRAK 2392
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 168/621 (27%), Positives = 272/621 (43%), Gaps = 108/621 (17%)
Query: 50 QKKGSTILNL-KCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPA 108
+K GS I NL + + G+ L FQ G +P D V++ + L A
Sbjct: 473 EKSGSCIGNLIRMEHVKIVCDGQYLHNFQCKHG-AIPVTNLMAGDRVIVSGEERSLF--A 529
Query: 109 LGQGVVYRLKDSSITVAFDD----IPEEGL------------NSPL-RLEKLA-NEVTYR 150
L +G V + +++T D +PE L ++PL L KL N +
Sbjct: 530 LSRGYVKEINMTTVTCLLDRNLSVLPESTLFRLDQEEKNCDIDTPLGNLSKLMENTFVSK 589
Query: 151 RMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALS 210
+++D +I + + ++P + +LK L+ Q+ A+ K L
Sbjct: 590 KLRDLIIDFREPQFISYLSSVLPHDAKDTVACILK----------GLNKPQRQAMKKVLL 639
Query: 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRL 270
SK+ ++ G PGTGKTTT+ ++ G +L + ++ AVDNI+ +L ++ +RL
Sbjct: 640 SKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRL 699
Query: 271 GHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRT 330
G ++ P + + + ++ R K +K+L LL
Sbjct: 700 GQIQKVHPAI-QQFTEQEICRS----------KSIKSL--ALL----------------- 729
Query: 331 LSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIAL 390
EE QL +V TT G FD I+DEA+Q + C L
Sbjct: 730 ---EELYNSQL----------IVATTCMGINHPIFSRKIFDFCIVDEASQISQPICLGPL 776
Query: 391 LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIM 450
R +L GDH QLPP V + EA G+ +LF+RL LTVQYRM+ IM
Sbjct: 777 FFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ--NKSAVVQLTVQYRMNSKIM 834
Query: 451 NWSSKQLYNSKIKA-------------HPSGVK------RTSSTEPTLLLI---DIAGCD 488
+ S+K Y K++ H VK S P L+ + + C
Sbjct: 835 SLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCF 894
Query: 489 MEEKKD------EEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILR 542
+ K E+ N EA++ + +++G SDIGII PY Q+ ++ L
Sbjct: 895 LNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLL 954
Query: 543 SKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCC 601
++ + +EV+TVD +QGR+K +++S VRSN VG L D RR+NVA+TRA+ +
Sbjct: 955 ARS--IGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLI 1012
Query: 602 LVCDTETVSSDGFLKRLIEYF 622
L+ +++ L++L+ +
Sbjct: 1013 LLGCVPSLNCYPPLEKLLNHL 1033
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 157/575 (27%), Positives = 253/575 (44%), Gaps = 94/575 (16%)
Query: 70 GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD-D 128
G+ L FQ G +PA D ++L + L AL +G V ++ +++T D +
Sbjct: 495 GQYLHNFQRKNGP-MPATNLMAGDRIILSGEERKLF--ALSKGYVKKMNKAAVTCLLDRN 551
Query: 129 IPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQN-GPAAGLIPVLFGEQKPTVLKKD 187
+ + RL++ E + + L LSK +++ P+ L ++ ++P +
Sbjct: 552 LSTLPATTVFRLDR---EERHGDISTPLGNLSKLMESTDPSKRLRELIIDFREPQFIAYL 608
Query: 188 IAFKPFNS---------NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK 238
+ P ++ L+ Q+ A+ + L SK+ ++ G PGTGKTTT+ ++
Sbjct: 609 SSVLPHDAKDTVANILKGLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALVRILSA 668
Query: 239 RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLA 298
G +L + ++ AVDNI+ +L +V +RLG ++ P +
Sbjct: 669 CGFSVLLTSYTHSAVDNILLKLAKFKVGFLRLGQSHKVHPDI------------------ 710
Query: 299 SDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD-VVLTTL 357
K T EI + R LA + + N+ +V TT
Sbjct: 711 ------------------QKFTEEEICRS--------RSIASLAHLEELYNSHPIVATTC 744
Query: 358 TGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKK 417
G +FD I+DEA+Q + C L R +L GDH QLPP V + EA
Sbjct: 745 MGINHPIFSRKTFDFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804
Query: 418 GLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEP 477
G+ +LF+RL + LTVQYRM+ IM+ S+K Y K++ V P
Sbjct: 805 GMSESLFKRLER--NESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALP 862
Query: 478 TL--------LLID------IAG--------CDMEEKK------DEEDSTMNEGEAEVAM 509
L L D +AG C + K E N EA + +
Sbjct: 863 NLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIV 922
Query: 510 AHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIII 569
I++G SDIG+I PY Q+ ++ L ++ + +EV+TVD +QGR+K I++
Sbjct: 923 FLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLARSS-VGMVEVNTVDKYQGRDKSLILV 981
Query: 570 SMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLV 603
S VRSN +G L D RR+NVA+TRA+ + L+
Sbjct: 982 SFVRSNEDGTLGELLKDWRRLNVALTRAKHKLILL 1016
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 148/519 (28%), Positives = 236/519 (45%), Gaps = 103/519 (19%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII----------------------- 233
L+ SQ +AI ++S + ++ GPPGTGKT T++ II
Sbjct: 1335 LNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNVIKVPLEKNS 1394
Query: 234 --LQEVKRGSKILACAASNIAVDNIVERLVP-------HRVR--LVRLGHP--------- 273
+++ + KIL CA SN AVD I RL H+ + LVR+G
Sbjct: 1395 SNTEQLLKKQKILICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRVGRSDVVNVAIKD 1454
Query: 274 --------ARLLPQVLESALDAQVLRGDNSSLAS--DIRKEMKALNGKLLKTKDKNTRRE 323
R+ + E D ++ R N+++ ++R ++ + +G +
Sbjct: 1455 LTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNPESPMSTEDISK 1514
Query: 324 IQKELRTLSK----------EERKRQQL-----------AVTDVIKNADVVLTTLTGAVS 362
+Q ++R LSK E R++ + A ++ +D++ +TL+G+
Sbjct: 1515 LQLKIRELSKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGSAH 1574
Query: 363 RKLDNTS--FDLVIIDEAAQALEIACWIAL-LKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
L FD VIIDEA Q E++ I L G RCI+ GD QLPPTV S A
Sbjct: 1575 DVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFKY 1634
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS-------GVKRT 472
++LF R+ + +L VQYRMH I + S + Y ++K P +
Sbjct: 1635 NQSLFVRMEK---NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQL 1691
Query: 473 SSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASD----IGII 528
P I+G +E+ + S N E VA+ L + + D IGII
Sbjct: 1692 EPLAPYKFFDIISG--RQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGII 1749
Query: 529 TPYAAQVVLLKILRSKDDKL------KNMEVSTVDGFQGREKEAIIISMVRS-NSKKEVG 581
+PY Q ++ +R + + K+++ +T+DGFQG+EKE I+IS VR+ ++K VG
Sbjct: 1750 SPYREQ---MQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVG 1806
Query: 582 FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIE 620
FL D RRMNVA+TRA+ ++ +++ + LIE
Sbjct: 1807 FLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIE 1845
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 219/462 (47%), Gaps = 74/462 (16%)
Query: 190 FKPFNSNLDHSQKDAISKALSSKNV--FMLHGPPGTGKTTTVVEIILQ--EVKRGSKILA 245
F P + L+ Q +I L K +++HGPPGTGKT T+VE I+Q +R +++L
Sbjct: 390 FVPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLV 449
Query: 246 CAASNIAVDNIVER-LVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKE 304
CA SN A D+I+E+ L VR+ D ++ R L + R
Sbjct: 450 CAPSNSAADHILEKLLCLEGVRIK-----------------DNEIFR-----LNAATR-- 485
Query: 305 MKALNGKLLKTKDKNTRREIQKEL-RTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-- 361
+ EI+ E+ R +E + + + + VV T ++ ++
Sbjct: 486 ---------------SYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLN 530
Query: 362 SRKLDNTSFDLVIIDEAAQALEIACWIAL----LKGSRCILAGDHLQLPPTVQSVEAEKK 417
+ ++ F +++DEA QA E IA+ L + +LAGD QL P + S +AE
Sbjct: 531 AEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESL 590
Query: 418 GLGRTLFERL--ADLY--GDE-VTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHP------ 466
GLG++ ERL D Y GDE + L YR H I++ SK Y+ ++ A
Sbjct: 591 GLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSV 650
Query: 467 -SGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG-VHASD 524
+ + + E ++ I GCD E++ S N E + KRL + V D
Sbjct: 651 LASLNFLPNKEFPMVFYGIQGCD--EREGNNPSWFNRIEISKVIETIKRLTANDCVQEED 708
Query: 525 IGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKE----- 579
IG+ITPY QV+ +K + + D + ++V +V+ FQG+EK+ IIIS VRS K
Sbjct: 709 IGVITPYRQQVMKIKEVLDRLD-MTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRA 767
Query: 580 --VGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLI 619
+GFLS+ RR NVA+TRA ++ + + D +L+
Sbjct: 768 YCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLL 809
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 214/436 (49%), Gaps = 57/436 (13%)
Query: 216 MLHGPPGTGKTTTVVEIILQEVK-------------RGSKILACAASNIAVDNIVERLVP 262
++HG G GK+ + +IL V+ R K+L +++N+AVD ++ L+
Sbjct: 473 IIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLGLLS 532
Query: 263 HRV-RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGK-LLKTKDKNT 320
+R+G ++ +L +L A S S+ KE+ AL + L T+
Sbjct: 533 LGFENFIRVGSVRKIAKPILPYSLHA------GSENESEQLKELHALMKEDLTPTERVYV 586
Query: 321 RREIQKEL----RTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIID 376
R+ I++ RTL K+ R VV T +++ F +V++D
Sbjct: 587 RKSIEQHKLGTNRTLLKQVR---------------VVGVTCAACPFPCMNDLKFPVVVLD 631
Query: 377 EAAQALEIACW--IALLKGSRCILAGDHLQLPPTVQ-SVEAEKKGLGRTLFERLADLYGD 433
E +Q E A IA + + IL GD QLPPT+Q S A + GL +TLF+RL L G
Sbjct: 632 ECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLC-LMGH 690
Query: 434 EVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTE--PTLLLIDIAGCDMEE 491
+ +L QYR H I ++ Y + + ++R+ E PTL ++ G + E
Sbjct: 691 KPI-LLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPTLCFYNVKGLEQIE 749
Query: 492 KKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDD----K 547
+ ++S N EA + + LI SG+ S IG+IT Y +Q+ L L S D
Sbjct: 750 R---DNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPD 806
Query: 548 LKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTE 607
+K ++VSTVD FQG EKE II+S VR+ ++VGF+ +RMNVA+TR +R +V +
Sbjct: 807 IKTVQVSTVDAFQGAEKEIIILSCVRT---RQVGFIDSEKRMNVALTRGKRHLLIVGNLA 863
Query: 608 TVSSDGFLKRLIEYFE 623
+ + R+I++ E
Sbjct: 864 CLRKNQLWGRVIQHCE 879
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 200/418 (47%), Gaps = 50/418 (11%)
Query: 237 VKRGS---KILACAASNIAVDNIVERLV----------PHRVRLVRLGHPARLLPQVLES 283
VK GS +IL CA SN AVD IV RL+ + LVR+G P S
Sbjct: 455 VKGGSTKRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVG-PG--------S 505
Query: 284 ALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAV 343
D + + SL +R + +N + +++ + L
Sbjct: 506 HSDVESV-----SLDYMVRCRQQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTL-- 558
Query: 344 TDVIKNADVVLTTLTGAVSRKLDNTS--FDLVIIDEAAQALEIACWIALLKGSR-CILAG 400
V+ AD+V TTL+ + + L + FD+VIIDEAAQA+E + I + G + +L G
Sbjct: 559 --VLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVG 616
Query: 401 DHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460
D QLP T+ S A K ++LF+RL + MLT QYRMH I + S+ Y
Sbjct: 617 DPKQLPATIISPLAIKYKYDQSLFQRLQE---KNSPHMLTTQYRMHSLIRAFPSRHFYQD 673
Query: 461 KIKAHPSGVKRTSSTEPTLLLIDIAGCDME---EKKDEEDSTMNEGEAEVAMAHAK---R 514
+ P+ R + + D+ E K S NE E ++AM + +
Sbjct: 674 LLLDGPNIPSRATHYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTK 733
Query: 515 LIQSGVHASDIGIITPYAAQVVLLK-ILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVR 573
+ AS IGII+PY QV+ L+ I ++ + + TVDGFQGRE+E II S VR
Sbjct: 734 VYPDEDFASRIGIISPYRQQVLALREIFKN----YPGISIDTVDGFQGREREIIIFSCVR 789
Query: 574 SNSKKE--VGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYL 629
+ ++ +GFLSD RRMNVA+TR R ++ +T+ +S + LI++ + + + +
Sbjct: 790 APVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQHTQNNQQLI 847
Score = 39.3 bits (90), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII 233
F+S + SQ +A++ AL + ++ GPPGTGKT ++ +I
Sbjct: 331 FSSTYNDSQLNALTSALEGNAITLIQGPPGTGKTHVILGLI 371
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 219/468 (46%), Gaps = 86/468 (18%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNI 256
L+ Q A+ K ++++ ++ G PGTGKTTT+ +I + + KIL + +++AVDNI
Sbjct: 932 LNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNI 991
Query: 257 VERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTK 316
+ +L +VRLG P ++ P V E L D +SL
Sbjct: 992 LIKLKGCDSTIVRLGSPHKIHPLVKEFCLTEGTTFDDLASLKH----------------- 1034
Query: 317 DKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIID 376
++ +V + G + FD IID
Sbjct: 1035 -----------------------------FYEDPQIVACSSLGVYHSIFNKRKFDYCIID 1065
Query: 377 EAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVT 436
EA+Q C L + +L GDH QLPP V++ K GL +LF+ L++ + + VT
Sbjct: 1066 EASQIPLPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVT 1125
Query: 437 SMLTVQYRMHEHIMNWSSKQLYNSKI---------------KAHPS-GVKRTSST----- 475
+ L +QYRM+E I + SS+ +Y + KAH S G+ +SS+
Sbjct: 1126 T-LRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVN 1184
Query: 476 ---EPTLLLI-----DIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGI 527
P+ +I DI G + + E+ T EA + ++ GV S IGI
Sbjct: 1185 KLINPSHSVIFFNTDDILGVESKTNNILENHT----EAFLIEQAVSSFLERGVKQSSIGI 1240
Query: 528 ITPYAAQVVLL-KILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG-FLSD 585
I+ Y +QV LL K L+S +E++TVD +QGR+K+ I+IS VRSNSK VG L D
Sbjct: 1241 ISIYKSQVELLSKNLKS----FTEIEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRD 1296
Query: 586 RRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSE 633
R+NVA++RA+ +C + T+SS + L++ E++ + +E
Sbjct: 1297 WHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLKLLEKNKWIFTLNE 1344
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 174/700 (24%), Positives = 296/700 (42%), Gaps = 136/700 (19%)
Query: 1 MEGRKTKEKQSAVSLQEFV-SVMAP---------LIDLEKEAEISASITSGASRNLDTAQ 50
M G KT S + +Q + + + P L+ LE E ++ I + + Q
Sbjct: 306 MLGPKTSPDSSWMKMQSLLEAPLQPENYKQKFELLLHLE-EIQLEVDIRRYDLQEVPMVQ 364
Query: 51 KKGSTILNLKCV--DAQTGLMGKTLLEFQSTKGDVLPA--HKFGTHDVVVLKPNKADLG- 105
+ +LN+ V + + L G L S++ D P +K H V + + LG
Sbjct: 365 NRALLLLNVPGVAENRPSVLRGDHLFASLSSERDSSPRVLYKGYVHGVEL---ERVQLGF 421
Query: 106 SPALGQGVVYRLKDSSITVAFDDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQN 165
SP L + V LK +T F+ +P L+++ A + ++ D+++ S Q
Sbjct: 422 SPKLMKKFVNDLK-FDVTFTFNRLP-------LQVQHRAAAMAMQKGLDSVLFPSASCQR 473
Query: 166 GPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQK-DAISKALSSKNVFMLHGPPGTG 224
G+ +P + + +N + Q I +S +++ GPPGTG
Sbjct: 474 SLFTGIF-------QPRWFDRKV-----EANEEQCQAVKHIVTGMSRPAPYLIFGPPGTG 521
Query: 225 KTTTVVEIILQ--EVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLE 282
KT T+VE I Q + ++ILACA SN A D + +RL L + R + +++
Sbjct: 522 KTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQRL------LTNIA--PRYIYRIMA 573
Query: 283 SALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLA 342
S+ + + +D+R + K
Sbjct: 574 SS-------ANYKDVPADVRPCCNW-------------------------DDSEKCYVYP 601
Query: 343 VTDVIKNADVVLTTLTGA---VSRKLDNTSFDLVIIDEAAQALEIACWIALL-------- 391
++K +++TTL A VS F V IDE A+E +A+
Sbjct: 602 SKKLLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDP 661
Query: 392 ----KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLA----------DLYGDEVTS 437
G + +LAGD QL P +S A + GLG +L ERL + Y + +
Sbjct: 662 DTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVT 721
Query: 438 MLTVQYRMHEHIMNWSSKQLYNSKIKAHPSG---VKRTSSTEPTLL-----LIDIAGCDM 489
L YR H+ I+ ++ Y+S++KA+ V+ T L +I C
Sbjct: 722 KLLWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCGE 781
Query: 490 EEKKDEEDSTMNEGEAEVAMAHAKRLIQS-------GVHASDIGIITPYAAQVVLLKI-L 541
+E++ + S N E EV + + ++L+QS + +IGII+PY QV +++ +
Sbjct: 782 DEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAI 841
Query: 542 RSKDDKLK------NMEVSTVDGFQGREKEAIIISMVRSNSKK-------EVGFLSDRRR 588
SKD L+ ++V +V+ FQG+E+ I+IS VRS S+ +GFL + +R
Sbjct: 842 TSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKR 901
Query: 589 MNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 628
+NVA+TRA+ +V + +S D R + Y + Y
Sbjct: 902 LNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYCRDEGAY 941
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 145/557 (26%), Positives = 242/557 (43%), Gaps = 130/557 (23%)
Query: 137 PLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLF--GEQKPTVLKKDIAFKPFN 194
PLR++ A E+T R + L P+LF + ++L D+ FK ++
Sbjct: 454 PLRVQHRALELTGRWV------------------LWPMLFPVASRGVSLLPSDVKFKLYD 495
Query: 195 SNLDHSQKD-----AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK--ILACA 247
+L+ + + I + + +++ GPPGTGKT T+VE I Q VK K ILACA
Sbjct: 496 RSLESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACA 555
Query: 248 ASNIAVDNIVERLVPH-RVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMK 306
SN D + +RL H + RL P+R DIR
Sbjct: 556 PSNSGADLLCQRLRVHLPSSIYRLLAPSR------------------------DIRM--- 588
Query: 307 ALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVT--DVIKNADVVLTTLTGA---V 361
+ ++++T + K+ + ++ V++TTL A V
Sbjct: 589 -----------------VPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVLITTLITASRLV 631
Query: 362 SRKLDNTSFDLVIIDEAAQALEIACWIALL----------KGSRCILAGDHLQLPPTVQS 411
S + F + IDEA +E +A+ G + +LAGD QL P ++S
Sbjct: 632 SAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRS 691
Query: 412 VEAEKKGLGRTLFERL----------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSK 461
A K GLG +L ERL + Y + + L YR H I++ ++ Y+ +
Sbjct: 692 PLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGE 751
Query: 462 IKAHPSGVKRTSSTE----P----TLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAK 513
++A V R P ++ + G D E++ S N EA ++ K
Sbjct: 752 LQACADVVDRERFCRWEGLPQQGFPIIFHGVMGKD--EREGNSPSFFNPEEAATVTSYLK 809
Query: 514 RLI-------QSGVHASDIGIITPYAAQVVLLKI--------LRSKDDKLKNMEVSTVDG 558
+L+ ++ + ++G+I+PY QV ++ LR DD +K+++V +V+
Sbjct: 810 QLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDD-IKDLKVGSVEE 868
Query: 559 FQGREKEAIIISMVRSNSK-------KEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSS 611
FQG+E+ I+IS VRS+ +GFL + +R NVAVTRA+ +V + +
Sbjct: 869 FQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGH 928
Query: 612 DGFLKRLIEYFEEHAEY 628
D K +E+ +E+ Y
Sbjct: 929 DPDWKTFLEFCKENGGY 945
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 136/523 (26%), Positives = 228/523 (43%), Gaps = 112/523 (21%)
Query: 171 LIPVLF--GEQKPTVLKKDIAFKPFNSNLDHSQKD-----AISKALSSKNVFMLHGPPGT 223
L P+LF + +L D+ K ++ +L+ + + I + +++ GPPGT
Sbjct: 469 LEPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGT 528
Query: 224 GKTTTVVEIILQEVKRGSK--ILACAASNIAVDNIVERLVPH-RVRLVRLGHPAR---LL 277
GKT T+VE I Q VK K ILACA SN D + +RL H + RL P+R L+
Sbjct: 529 GKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIHLV 588
Query: 278 PQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERK 337
P+ ++ + +GD + +K K
Sbjct: 589 PEDIKPCCNWDAKKGDF-----------------VFPSKKK------------------- 612
Query: 338 RQQLAVTDVIKNADVVLTTLTGA---VSRKLDNTSFDLVIIDEAAQALEIACWIALL--- 391
++ V++TTL A VS + F + IDEA A+E +A+
Sbjct: 613 ---------LQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEPESLVAIAGLM 663
Query: 392 -------KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERL----------ADLYGDE 434
G + +LAGD QL P ++ +K GLG +L ERL D Y +
Sbjct: 664 EVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYKKGPDGYNPQ 723
Query: 435 VTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRT--------SSTEPTLLLIDIAG 486
+ L YR H I++ ++ Y+ +++A V R + ++ + G
Sbjct: 724 FITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRERFCRWEGLPRQDFPIIFHGVMG 783
Query: 487 CDMEEKKDEEDSTMNEGEAEVAMAHAKRLI-------QSGVHASDIGIITPYAAQVVLLK 539
D E++ S N EA ++ K+L+ ++ + +G+I+PY QV ++
Sbjct: 784 KD--EREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIR 841
Query: 540 ILRSKDDK-------LKNMEVSTVDGFQGREKEAIIISMVRSNSK-------KEVGFLSD 585
+K DK +K+++V +V+ FQG+E+ I+IS VRS+ +GFL +
Sbjct: 842 YCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKN 901
Query: 586 RRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 628
+R NVAVTRA+ +V + + D K +E+ +E+ Y
Sbjct: 902 PKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 154/517 (29%), Positives = 240/517 (46%), Gaps = 90/517 (17%)
Query: 171 LIPVLFGEQKPTVLKKDIAFK---PFNSN-LDHSQKDAISKALSSKNVFMLHGPPGTGKT 226
I +L G QKP K+I F F+S+ L+ SQK A+ L++ ++ +L GPPGTGKT
Sbjct: 623 FIDLLLG-QKPI---KEIYFDNRLKFSSDKLNRSQKTAVEHVLNN-SITILQGPPGTGKT 677
Query: 227 TTVVEIILQEVKR--GSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESA 284
+T+ EII+Q ++R IL AASNIA+DNI E+++ +R ++ L R+L + E
Sbjct: 678 STIEEIIIQVIERFHAFPILCVAASNIAIDNIAEKIMENRPQIKIL----RILSKKKEQQ 733
Query: 285 LDAQVLRGD---NSSLASDIRKEMKALNGKLLKTKDKNTRRE--IQKELRTLSKEERKRQ 339
G+ ++ + ++ +M+ + K TRR I K T +E+ R
Sbjct: 734 YSDDHPLGEICLHNIVYKNLSPDMQVVANK--------TRRGEMISKSEDTKFYKEKNR- 784
Query: 340 QLAVTDVIKNADVVLTTLTGAVSRKLDN-TSFDLVIIDEAAQALEIACWIAL-LKGSR-C 396
V+ + ++ TT A R+L +VI+DEA Q+ E + + L L G R
Sbjct: 785 --VTNKVVSQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNF 842
Query: 397 ILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQ 456
+ GD QL S + L +LFER+ + ML QYRMH I + K+
Sbjct: 843 VFVGDEKQL-----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKK 897
Query: 457 LYNSKIKAHPSGVKRTSSTEPTLL-LIDIAGCDMEE----KKDEEDSTMNEGEAEVAMAH 511
+YN ++K GV P + + CD+ + + D E +
Sbjct: 898 IYNGELK---DGVTDEQKAWPGVQHPLFFYQCDLGPESRVRSTQRDIVGFTYENKHECVE 954
Query: 512 AKRLIQ-----SGVHASDIGIITPYAAQVVLLKILRSKD--------------------- 545
++IQ V +IG+ITPY+AQ LL + +K+
Sbjct: 955 IVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFN 1014
Query: 546 ----------------DKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRM 589
+ + + V+TVD FQG EK II S VR+N++ ++GFL D+RR+
Sbjct: 1015 AAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRL 1074
Query: 590 NVAVTRARRQCCLVCDTETV-SSDGFLKRLIEYFEEH 625
NVA+TRA+ +V + + D K I Y EE
Sbjct: 1075 NVALTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEEQ 1111
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 141/558 (25%), Positives = 232/558 (41%), Gaps = 132/558 (23%)
Query: 137 PLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLF--GEQKPTVLKKDIAFKPFN 194
PLR++ A E+T R + L P+LF + +L D+ K ++
Sbjct: 453 PLRVQHRALELTGRWL------------------LWPMLFPVAPRDVPLLPSDVKLKLYD 494
Query: 195 SNLDHSQKD-----AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK--ILACA 247
+L+ + + I + +++ GPPGTGKT T+VE I Q VK K ILACA
Sbjct: 495 RSLESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACA 554
Query: 248 ASNIAVDNIVERLVPHR----VRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
SN D + +RL H RL+ R++P+ ++ + +G+ A +
Sbjct: 555 PSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQ 614
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGA--- 360
E + V++TTL A
Sbjct: 615 EYR---------------------------------------------VLITTLITAGRL 629
Query: 361 VSRKLDNTSFDLVIIDEAAQALEIACWIALL----------KGSRCILAGDHLQLPPTVQ 410
VS + F + IDEA +E +A+ G + +LAGD QL P ++
Sbjct: 630 VSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLR 689
Query: 411 SVEAEKKGLGRTLFERL----------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460
S +K GLG +L ERL D Y + + L YR H I++ ++ Y
Sbjct: 690 SPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEG 749
Query: 461 KIKAHPSGVKRTSSTEPT--------LLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHA 512
+++A V R ++ + G D E++ S N EA ++
Sbjct: 750 ELQACADVVDRERFCRWAGLPRQGFPIIFHGVMGKD--EREGNSPSFFNPEEAATVTSYL 807
Query: 513 KRLI-------QSGVHASDIGIITPYAAQVVLLKI--------LRSKDDKLKNMEVSTVD 557
K L+ ++ + +G+I+PY QV ++ LR DD +K+++V +V+
Sbjct: 808 KLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDD-IKDLKVGSVE 866
Query: 558 GFQGREKEAIIISMVRSNSK-------KEVGFLSDRRRMNVAVTRARRQCCLVCDTETVS 610
FQG+E+ I+IS VRS+ +GFL + +R NVAVTRA+ +V + +
Sbjct: 867 EFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLG 926
Query: 611 SDGFLKRLIEYFEEHAEY 628
D K +E+ +E+ Y
Sbjct: 927 HDPDWKVFLEFCKENGGY 944
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 138/487 (28%), Positives = 215/487 (44%), Gaps = 97/487 (19%)
Query: 189 AFKPFNSNLDHS--QKDAISKAL---SSKNVFMLHGPPGTGKTTTVVEIILQEVKR--GS 241
A + F+ L+ + QK A+ + S +++ GPPGTGKT T+VE I Q K G+
Sbjct: 515 ALRLFDQKLEKNPEQKTAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGA 574
Query: 242 KILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDI 301
+ILACA SN A D + E+L+
Sbjct: 575 RILACAPSNSAADQLGEKLI---------------------------------------T 595
Query: 302 RKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGA- 360
+ + A N + +N + EI K L S E + + + +V+ TL A
Sbjct: 596 SQHVDARNIYRIYASSRNPK-EIPKVLENNSNVEGENIIFPCKEDLMPYKIVVCTLVTAG 654
Query: 361 --VSRKLDNTSFDLVIIDEAAQALEIACWIALL-----KGSRCILAGDHLQLPPTVQSVE 413
VS F + +DEA A+E I++ + + +LAGD QL P ++S
Sbjct: 655 RLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPF 714
Query: 414 AEKKGLGRTLFERLA---DLY--GDE------VTSMLTVQYRMHEHIMNWSSKQLYNSKI 462
A K GLG +L ERL +LY GD VT +L YR H I+ ++ Y++++
Sbjct: 715 AIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQ-NYRSHPSILKVPNELFYDNEL 773
Query: 463 KAHPSGVK-RTSSTEPTL-------LLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKR 514
KA + R T L + + G D E++ S N E + M + K+
Sbjct: 774 KACADEISSRQYCTWEHLPKRGFPVIFHGVVGKD--ERESTSPSFFNTSEIDKIMDYLKK 831
Query: 515 LIQS-------GVHASDIGIITPYAAQV----VLLKILRSKDD--KLKNMEVSTVDGFQG 561
L+ + + DIGII PY QV +KI R ++ ++V +V+ FQG
Sbjct: 832 LLLTQAKKGIAKISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQG 891
Query: 562 REKEAIIISMVRS-------NSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGF 614
+E++ II+S VRS + K +GFL + +R NVAVTRA+ +V + + +D
Sbjct: 892 QERKVIIVSTVRSSKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIILRTDEI 951
Query: 615 LKRLIEY 621
R + Y
Sbjct: 952 WGRFMNY 958
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 211/468 (45%), Gaps = 102/468 (21%)
Query: 215 FMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERLV------PHRV- 265
+++ GPPGTGKT T+VE I Q K + ILACA SN A D + E+L+ H++
Sbjct: 551 YLVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLITSEHVDAHKIY 610
Query: 266 RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQ 325
RL + +P++L+ DN ++ +EM
Sbjct: 611 RLYASSRNQKDIPKILK----------DNC----NVDEEM-------------------- 636
Query: 326 KELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIA 385
+ KE+ ++ + ++ +V TG S +F +DEA A+E
Sbjct: 637 --IDFPCKEDLMSYKILICTLVTAGRLV----TGGFSEDHFTHNF----VDEAGHAVESE 686
Query: 386 CWIA---LLKGSR--CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLA---DLY--GD-- 433
I+ LL + +LAGD QL P ++S A GL +L ERL DLY GD
Sbjct: 687 TIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVE 746
Query: 434 ---EVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGV--------KRTSSTEPTLLLI 482
S L + YR H +I+ ++ Y+ ++KA + + S ++
Sbjct: 747 FDNRYVSKLIMNYRSHPYILEVPNRLFYDGELKACADEISSNQYCMWEHLPSKGFPVIFH 806
Query: 483 DIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQ-------SGVHASDIGIITPYAAQV 535
+ G D E++ S N E + + + K+L+ S + DIGII PY QV
Sbjct: 807 GVPGKD--ERESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQV 864
Query: 536 VLLKILRSKD-DK-------LKNMEVSTVDGFQGREKEAIIISMVRSNSKK-------EV 580
KI R+ D DK + N++V +V+ FQG+E++ I++S VRS+ K +
Sbjct: 865 E--KIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFNI 922
Query: 581 GFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 628
GFL + +R NVAVTRA+ +V + + +D R I++ E Y
Sbjct: 923 GFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDESWGRFIDFCLERGGY 970
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 119 bits (298), Expect = 8e-26, Method: Composition-based stats.
Identities = 147/576 (25%), Positives = 241/576 (41%), Gaps = 96/576 (16%)
Query: 124 VAFDDIPEEGLNS---------PLRLEKLANEVTYRRMKDAL-----IQLSKGVQNGPAA 169
+ + +PEE L P +L L E R +++A I L + V P
Sbjct: 2073 MGMEKVPEEVLRPGTLFTVELLPKQLPDLRKEEAVRGLEEASPLVTSIALGRPVPQ-PLC 2131
Query: 170 GLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTV 229
+IP F E++ + L+ SQ A+ +AL K ++ GPPGTGKT
Sbjct: 2132 RVIPSRFLERQTYNIPGG------RHKLNPSQNVAVREALE-KPFTVIQGPPGTGKTIVG 2184
Query: 230 VEIIL-------QEVK-----RGSK------ILACAASNIAVDNIVERLVPHRVRLVRLG 271
+ I+ ++V+ RG K IL C SN +VD ++ L+ R+ L
Sbjct: 2185 LHIVFWFHKSNQEQVQPGGPPRGEKRLGGPCILYCGPSNKSVD-VLAGLLLRRMEL---- 2239
Query: 272 HPARLLPQVLESALDAQVLRGDNSSLASDIR--KEMKALNGKLLKTKDKNTRREIQKELR 329
P R+ + E++ G L R + ++L L + + E++
Sbjct: 2240 KPLRVYSEQAEASEFPVPRVGSRKLLRKSPREGRPNQSLRSITLHHRIRQAPNPYSSEIK 2299
Query: 330 TLSKEERKRQQLAVTDVI--------------KNADVVLTTLTGAVSRKLDNTSFDLVII 375
++ + + D++ +V+L T + A S L +++
Sbjct: 2300 AFDTRLQRGELFSREDLVWYKKVLWEARKFELDRHEVILCTCSCAASASLKILDVRQILV 2359
Query: 376 DEAAQALEIACWIALLK---GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 432
DEA A E I L++ + +L GDH QL P V++ + GL R+LFER
Sbjct: 2360 DEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFERY----- 2414
Query: 433 DEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKA------HPSGVKRTSSTEPTLLLIDIAG 486
E ML QYRMHE I + S Y SK+K PS + ++ + G
Sbjct: 2415 HEDAHMLDTQYRMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLGHAGKESCPVIFGHVQG 2474
Query: 487 CD----MEEKKDEEDSTMN-EGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVV-LLKI 540
+ + + E+S N E AEV + + V DI ++TPY AQ + K
Sbjct: 2475 HERSLLVSTDEGNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKA 2534
Query: 541 LRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS-------------KKEVGFLSDRR 587
LR + + + VS++ QG E +++S VR+ + KK +GF+ D
Sbjct: 2535 LRR--EGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPN 2592
Query: 588 RMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFE 623
++NVAVTRA+ CL+ D + + L+++ E
Sbjct: 2593 QVNVAVTRAQEGLCLIGDHLLLRCCPLWRSLLDFCE 2628
Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 110/433 (25%), Positives = 177/433 (40%), Gaps = 66/433 (15%)
Query: 215 FMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVD-NIVERLVPHRVRLVRLGH 272
+++GP GTGKT T+ L+ ++R +K+L C +N A D I E H V GH
Sbjct: 540 LLIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSAADIYIREYFHSH----VSGGH 595
Query: 273 PARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLS 332
P +V+ + D + + D +L T D+ + R +
Sbjct: 596 PEATPLRVMYT--DRPLSQTDPVTLQY------------CCLTDDR-------QAFRPPT 634
Query: 333 KEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL- 391
+ E R + VV+TT + A ++ F ++IDEAAQ LE L
Sbjct: 635 RAELARHR-----------VVVTTTSQARELRVPVGFFSHILIDEAAQMLECEALTPLAY 683
Query: 392 --KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS-------MLTVQ 442
G+R +LAGDH+Q+ P + SV A + TL RL Y E +
Sbjct: 684 ASHGTRLVLAGDHMQVTPRLFSV-ARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHEN 742
Query: 443 YRMHEHIMNWSSKQLYNSKIKA-HPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMN 501
YR + I+++ S+ Y +K H G L+ +AG ++ S +N
Sbjct: 743 YRCTDAIVSFISRHFYVAKGNPIHARGKVPPHPRHYPLMFCHVAGS--PDRDMSMASWLN 800
Query: 502 EGEAEVAMAHAKRLIQS-----GVHASDIGIITPYAAQVVLLKI-LRSKDDKLKNMEVST 555
E + + + G + + AQV L+ LR +D L + V +
Sbjct: 801 LAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVSHGAQVSALRQELRRRD--LGQVSVGS 858
Query: 556 VDGFQGREKEAIIISMVRS-NSKKEVG-----FLSDRRRMNVAVTRARRQCCLVCDTETV 609
+ GR+ +++S V + S G F +D R +N +TRA+ Q +V D +
Sbjct: 859 FEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVAL 918
Query: 610 SSDGFLKRLIEYF 622
S G +L E F
Sbjct: 919 CSFGACGKLWESF 931
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 194/441 (43%), Gaps = 78/441 (17%)
Query: 219 GPPGTGKTTTVVEI---ILQEVKRGSKILACAASNIAVD-NIVERLVPHRVRLVRLGHPA 274
GP GTGKT T+ + ILQ+ + ++IL C SN A D I + L P+ V G+P
Sbjct: 668 GPYGTGKTFTLAQAAKHILQQ--QETRILICTHSNSAADLYIKDYLHPY----VEAGNP- 720
Query: 275 RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKE 334
A+ LR + + T + + +S
Sbjct: 721 -----------QARPLR-------------------VYFRNRWVKTVHPVVHQYCLISST 750
Query: 335 ERKRQQLAVTDVIKNADVVLTTLTGAVSRKLD--NTSFDLVIIDEAAQALEIACWIAL-- 390
+ Q D++K+ VV+T T +LD F V++DEAAQA+E + L
Sbjct: 751 QSTFQMPQKEDILKHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLAL 810
Query: 391 -LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS--MLTVQYRMHE 447
K +R +LAGDH+QL P V S A ++ L +L +RL + Y E +L YR HE
Sbjct: 811 ATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHE 870
Query: 448 HIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDE---EDSTMNEGE 504
I+N++S+ Y K+ A SG + L G D++EK ++ + E
Sbjct: 871 AIINYTSELFYEGKLMA--SGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVV 928
Query: 505 AEVAMAHAKRLIQSG-VHASDIGIITPYAAQVVLLKI-LRSKDDKLKNMEVSTVDGFQGR 562
V K + G + IG++TPYA QV ++ LR K +L ++ V V QG+
Sbjct: 929 ERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK--RLSDVNVERVLNVQGK 986
Query: 563 EKEAIIISMVRSNS----------KKE-----------VGFLSDRRRMNVAVTRARRQCC 601
+ + +S VR+ KKE GFLS+ + +N A+TRA+
Sbjct: 987 QFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVA 1046
Query: 602 LVCDTETVSSDGFLKRLIEYF 622
+V D + S G ++ E F
Sbjct: 1047 VVGDPVALCSIGRCRKFWERF 1067
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 211/497 (42%), Gaps = 99/497 (19%)
Query: 182 TVLKKDIAFKP-------------FNSNLDHSQKDAISKALSSKNV----FMLHGPPGTG 224
++L DI+ P + L+ QK+AI + ++ ++ GP GTG
Sbjct: 607 SILFPDISLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLSINLPPVLIIGPYGTG 666
Query: 225 KTTTVVEIILQEVKRG-SKILACAASNIAVD-NIVERLVPHRVRLVRLGHPARLLPQVLE 282
KT T+ + + +K+ S++L C SN A D I + L P+ V G+P
Sbjct: 667 KTFTLAQAVKHILKQPESRVLICTHSNSAADLYIKDYLHPY----VEAGNP--------- 713
Query: 283 SALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLA 342
A+ LR + + T + ++ +S Q
Sbjct: 714 ---HARPLR-------------------VYFRNRWVKTVHPLVQQYCLISGAHFTFQMPT 751
Query: 343 VTDVIKNADVVLTTLTGAVSRKLDNTS--FDLVIIDEAAQALEIACWIAL---LKGSRCI 397
DV ++ VV+T T +LD F +++DEAAQA+E + L +K +R +
Sbjct: 752 RQDVERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVV 811
Query: 398 LAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS--MLTVQYRMHEHIMNWSSK 455
LAGDH+QL P V S A ++ L +L +RL + Y E +L YR HE I+N++S
Sbjct: 812 LAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSD 871
Query: 456 QLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEV-------- 507
Y K+ A SG + L G D++EK +ST AEV
Sbjct: 872 LFYEGKLMA--SGKQPPHKDFYPLTFFTARGEDVQEK----NSTAYYNNAEVFEIVERVE 925
Query: 508 AMAHAKRLIQSGVHASDIGIITPYAAQVVLLKI-LRSKDDKLKNMEVSTVDGFQGREKEA 566
M + + IG+++PYA QV ++ LR K ++ + V V QG++
Sbjct: 926 EMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKK--RMSEVSVERVLNVQGKQFRV 983
Query: 567 IIISMVRSNS----------KKE-----------VGFLSDRRRMNVAVTRARRQCCLVCD 605
+ +S VR+ +KE GFLS+ + +N A+TRA+ +V D
Sbjct: 984 LFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGD 1043
Query: 606 TETVSSDGFLKRLIEYF 622
+ S G ++ E F
Sbjct: 1044 PIALCSVGRCRKFWETF 1060
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 194/441 (43%), Gaps = 78/441 (17%)
Query: 219 GPPGTGKTTTV---VEIILQEVKRGSKILACAASNIAVD-NIVERLVPHRVRLVRLGHPA 274
GP GTGKT T+ V+ ILQ+ + ++IL C SN A D I + L P+ V G+P
Sbjct: 668 GPYGTGKTFTLAQAVKHILQQ--QETRILICTHSNSAADLYIKDYLHPY----VEAGNP- 720
Query: 275 RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKE 334
A+ LR + + T + + +S
Sbjct: 721 -----------QARPLR-------------------VYFRNRWVKTVHPVVHQYCLISSA 750
Query: 335 ERKRQQLAVTDVIKNADVVLTTLTGAVSRKLD--NTSFDLVIIDEAAQALEIACWIAL-- 390
Q D++K+ VV+T T +LD F +++DEAAQA+E + L
Sbjct: 751 HSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLAL 810
Query: 391 -LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS--MLTVQYRMHE 447
+ +R +LAGDH+QL P V S A ++ L +L +RL + Y E +L YR HE
Sbjct: 811 ATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHE 870
Query: 448 HIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDE---EDSTMNEGE 504
I+N++S+ Y K+ A SG + L G D++EK ++ + E
Sbjct: 871 AIINYTSELFYEGKLMA--SGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVV 928
Query: 505 AEVAMAHAKRLIQSG-VHASDIGIITPYAAQVVLLKI-LRSKDDKLKNMEVSTVDGFQGR 562
V K + G + IG++TPYA QV ++ LR K +L ++ V V QG+
Sbjct: 929 ERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK--RLSDVNVERVLNVQGK 986
Query: 563 EKEAIIISMVRSNS----------KKE-----------VGFLSDRRRMNVAVTRARRQCC 601
+ + +S VR+ KKE GFLS+ + +N A+TRA+
Sbjct: 987 QFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVA 1046
Query: 602 LVCDTETVSSDGFLKRLIEYF 622
+V D + S G ++ E F
Sbjct: 1047 VVGDPIALCSIGRCRKFWERF 1067
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 133/496 (26%), Positives = 216/496 (43%), Gaps = 81/496 (16%)
Query: 187 DIAFKPFNSNLDHSQKDAISKAL--SSKNV-FMLHGPPGTGKTTTVVEIILQEVKR--GS 241
D + +N +L+ QK A+ L ++N+ ++L GPPG+GKT T++E +LQ V+ G+
Sbjct: 774 DSKLEWYNQSLNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGA 833
Query: 242 KILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLP--QVLESALDAQVLRGDNSSLAS 299
+IL SN + D + +RL+ + L G RL+ QV + + +++ + S
Sbjct: 834 RILVGTPSNSSADLVTKRLIDSKALLQ--GDFIRLVSYNQVEKDLIPPEIM---SYCATS 888
Query: 300 DIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTG 359
D+ G + +DK E +LR +K T I + TTL
Sbjct: 889 DV--------GAVGSCEDKMMVTESGLKLRCQAK-------FIGTHRITIS--TCTTLGN 931
Query: 360 AVSRKLDNTSFDLVIIDEAAQALEIACWIALL----KGSRCILAGDHLQLPPTVQSVEAE 415
+ F V+ DEA Q E + ++ K S+ +L+GD QL V S A
Sbjct: 932 FLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIAS 991
Query: 416 KKGLGRTLFERL-------ADL--------YGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460
K G + ERL DL Y V + L YR IM+ S+ Y+
Sbjct: 992 KMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDD 1051
Query: 461 KIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKD--------------------EEDSTM 500
++ S S E LL C E +KD + S
Sbjct: 1052 ELIPVLS---EKDSRESRLL--SKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWF 1106
Query: 501 NEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQ 560
N E L ++ V A IGIITPY QV +L+ + D + ++ +V+ FQ
Sbjct: 1107 NPQEVREVFLMTIALYRANVTADQIGIITPYQKQVKMLRSMFIGTDVVMP-KIGSVEEFQ 1165
Query: 561 GREKEAIIISMVRS-------NSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDG 613
G+E++ I+IS VRS +++ +GF+ +R+NVAV+RAR + + ++ D
Sbjct: 1166 GQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDE 1225
Query: 614 FLKRLIEYFEEHAEYL 629
++LI + ++ Y
Sbjct: 1226 CWRQLILFCVKNNAYF 1241
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 140/297 (47%), Gaps = 41/297 (13%)
Query: 370 FDLVIIDEAAQALEIACWIAL-----LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLF 424
F V +DEA QA E C I L + G + +LAGD +QL P ++S A GL +
Sbjct: 880 FTHVFVDEAGQASEPECLIPLGLMSDISG-QIVLAGDPMQLGPVIKSRLAMAYGLNVSFL 938
Query: 425 ERL---------------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIK--AHPS 467
ERL + + + L YR HE ++ S+ Y+ +++ A P+
Sbjct: 939 ERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPT 998
Query: 468 ------GVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRL---IQS 518
G ++ L+ + G + E K S N EA + + L I S
Sbjct: 999 VVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSP--SWFNPAEAVQVLRYCCLLAHSISS 1056
Query: 519 GVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKK 578
V ASDIG+ITPY QV ++IL D L +++V +V+ FQG+E IIIS VRSN +
Sbjct: 1057 QVSASDIGVITPYRKQVEKIRILLRNVD-LMDIKVGSVEEFQGQEYLVIIISTVRSNEDR 1115
Query: 579 ------EVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYL 629
+GFLS+ +R NVA+TR + ++ + + D L+EY + Y+
Sbjct: 1116 FEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEYSITNGVYM 1172
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 193 FNSNLDHSQKDAISKALSSKN---VFMLHGPPGTGKTTTVVEIILQ--EVKRGSKILACA 247
FN L+ +QK A+ + LS ++L GPPGTGKT T++E +LQ S+IL CA
Sbjct: 741 FNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCA 800
Query: 248 ASNIAVDNIVERL 260
SN A D + RL
Sbjct: 801 PSNSAADLVCLRL 813
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 137/296 (46%), Gaps = 41/296 (13%)
Query: 370 FDLVIIDEAAQALEIACWIAL-----LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLF 424
F V +DEA QA E C I L + G + +LAGD +QL P ++S A GL ++
Sbjct: 882 FTHVFVDEAGQASEPECLIPLGLISDING-QIVLAGDPMQLGPVIKSRLAMAYGLNVSML 940
Query: 425 ERL---------------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIK--AHPS 467
ERL Y + + L YR H ++ S+ Y+ +++ A P
Sbjct: 941 ERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPK 1000
Query: 468 ------GVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHA---KRLIQS 518
G ++ L+ + G E ++ S + EA M + R + S
Sbjct: 1001 VVTSLLGWEKLPRKGFPLIFHGVRG--NEAREGRSPSWFSPAEAVQVMRYCCLLARSVSS 1058
Query: 519 GVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKK 578
V + DIG+ITPY QV +KIL D L +++V +V+ FQG+E I+IS VRSN +
Sbjct: 1059 QVSSKDIGVITPYRKQVEKIKILLRNVD-LTDIKVGSVEEFQGQEYLVIVISTVRSNEDR 1117
Query: 579 ------EVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 628
+GFLS+ +R NVA+TR + ++ + + D L+EY + Y
Sbjct: 1118 FEDDRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEYSVSNGVY 1173
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 193 FNSNLDHSQKDAISKALSSKN---VFMLHGPPGTGKTTTVVEIILQ--EVKRGSKILACA 247
FN L+ +QK A+ + LS ++L GPPGTGKT T++E +LQ S+IL CA
Sbjct: 743 FNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCA 802
Query: 248 ASNIAVDNIVERL----VPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIR 302
SN A D + RL VP +VR+ R +++ A+ G++ AS R
Sbjct: 803 PSNSAADLVCLRLHESKVPKPAAMVRVNATCRFEETIID-AIKPYCRDGEDIWRASRFR 860
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 154/323 (47%), Gaps = 11/323 (3%)
Query: 312 LLKTKDKNTRREI---QKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRK--LD 366
L+ +TRR I +++ RT ++ + + ++K+A+VV T TGA + L
Sbjct: 930 WLQMYQADTRRRILSYERQYRTWAERMAELRLQEDLHILKDAEVVGMTTTGAAKYRQILQ 989
Query: 367 NTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVE-AEKKGLGRTLF 424
+VI++EAA+ LE L K + IL GDH QL P+ + A+ L +LF
Sbjct: 990 QVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLF 1049
Query: 425 ERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDI 484
ERL + V L Q+RM I + +Y ++ HPS +K + L +
Sbjct: 1050 ERLVKVNIPFVR--LNYQHRMRPEIARLLTPHIYQD-LENHPSVLKYEQIKGVSSNLFFV 1106
Query: 485 AGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSK 544
E++ E S N+ EA + + L+ S I I+T Y Q+ L+ L
Sbjct: 1107 EHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLRKLMPV 1166
Query: 545 DDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVC 604
++V VD +QG E + I++S+VRSN + +VGFL R+ VA++RA++ +
Sbjct: 1167 KT-FAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIG 1225
Query: 605 DTETVSSDGFLKRLIEYFEEHAE 627
+ + ++ R+I E+ +
Sbjct: 1226 NMQMLAKVPLWSRIIHTLRENNQ 1248
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEI---------ILQEVKRGSKILACA 247
LD SQ +A+ AL+ K + ++ GPPGTGKT ++I + Q + IL
Sbjct: 591 LDDSQMEALQFALT-KELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPILVVC 649
Query: 248 ASNIAVDNIVERLV-PHRVRLVRLG 271
+N A+D +E + + +VR+G
Sbjct: 650 YTNHALDQFLEGIYGCQKTSIVRVG 674
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 157/308 (50%), Gaps = 32/308 (10%)
Query: 322 REIQKELRTLSKEERKRQQLA---VTDVIKNADVVLTTLTGAVSRK--LDNTSFDLVIID 376
+E+ + R K +R+R + +++ A+V+ T TG + L+ + + I+
Sbjct: 652 KELNRLYRFYLKVDRERIGFSNKRAAILLRGANVIGMTTTGLNKYRDILERINPKICFIE 711
Query: 377 EAAQALEIACWIALLKG-SRCILAGDHLQLPP--TVQSVEAEKKGLGRTLFERLADLYGD 433
EAA LE A+ + +L GDH QL P + ++ + L ++FERL + D
Sbjct: 712 EAADVLEGPIIPAVFPSLEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVE--ND 769
Query: 434 EVTSMLTVQYRMHEHIMNWSS---KQLYNSKI-KAHPS-----GVKRTSSTEPTLLLIDI 484
+ LT+Q RMH I S + L + +I K PS ++R T +
Sbjct: 770 MEYTRLTMQRRMHPQIRRLVSSVYEDLSDYEITKYWPSIPGMGEIRRFFLTHSRI----- 824
Query: 485 AGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSK 544
E D S +N EA++ + A LI +GV I +T YAAQ L++ L S+
Sbjct: 825 ------EDNDGFASKINLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERLLSE 878
Query: 545 D-DKLKN-MEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCL 602
++ K+ ++V+TVDG+QG E + +++S+VR+N + EVGFLS R+ V+++RARR +
Sbjct: 879 SLNREKHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFI 938
Query: 603 VCDTETVS 610
+ + V+
Sbjct: 939 FGNAQLVA 946
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 152 MKDALI------QLSKGVQNGPAAGLIPVLFGEQKPTVLKKDIAFKPFNSN---LDHSQK 202
MKD L+ + +K +QN P + +L + V A +PF LD SQ
Sbjct: 322 MKDYLVHCKSNQETAKHIQNNPRIRINSILKNNSQKIV----NALEPFGPGEYILDSSQL 377
Query: 203 DAISKALSSKNVFMLHGPPGTGK---TTTVVEIILQEVKRGS-KILACAASNIAVDNIVE 258
A L+ K + ++ GPPGTGK T +E +L+ IL +N AVD I+
Sbjct: 378 KAYQSMLT-KRLSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQILI 436
Query: 259 RLVPHRVRLVRLG 271
RL+ ++RLG
Sbjct: 437 RLLHQGASVMRLG 449
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,095,349
Number of Sequences: 539616
Number of extensions: 9073411
Number of successful extensions: 39524
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 39070
Number of HSP's gapped (non-prelim): 288
length of query: 637
length of database: 191,569,459
effective HSP length: 124
effective length of query: 513
effective length of database: 124,657,075
effective search space: 63949079475
effective search space used: 63949079475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)