Query 006652
Match_columns 637
No_of_seqs 446 out of 2636
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 12:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1803 DNA helicase [Replicat 100.0 2E-116 5E-121 905.4 42.3 619 16-637 3-640 (649)
2 TIGR00376 DNA helicase, putati 100.0 2.2E-99 5E-104 837.6 59.1 586 28-633 1-636 (637)
3 KOG1802 RNA helicase nonsense 100.0 2E-90 4.4E-95 711.9 44.0 579 11-630 235-839 (935)
4 KOG1805 DNA replication helica 100.0 5.2E-85 1.1E-89 700.0 35.2 559 15-628 480-1076(1100)
5 KOG1807 Helicases [Replication 100.0 2.2E-53 4.7E-58 444.5 31.1 282 344-632 693-981 (1025)
6 COG1112 Superfamily I DNA and 100.0 4.2E-51 9.1E-56 475.0 37.0 607 14-632 90-754 (767)
7 KOG1801 tRNA-splicing endonucl 100.0 7.3E-39 1.6E-43 363.1 23.4 285 347-635 512-817 (827)
8 KOG1804 RNA helicase [RNA proc 100.0 3E-40 6.6E-45 359.5 11.1 385 195-630 310-722 (775)
9 PF13087 AAA_12: AAA domain; P 100.0 2.3E-36 5.1E-41 292.4 10.3 187 419-607 1-200 (200)
10 PF13086 AAA_11: AAA domain; P 100.0 2.6E-35 5.6E-40 292.4 14.8 215 196-411 1-235 (236)
11 PRK11054 helD DNA helicase IV; 100.0 5.3E-34 1.2E-38 317.4 26.6 387 195-619 195-674 (684)
12 PRK11773 uvrD DNA-dependent he 100.0 3.9E-32 8.4E-37 309.3 25.0 311 195-532 8-357 (721)
13 TIGR01075 uvrD DNA helicase II 100.0 2.9E-32 6.4E-37 310.7 23.7 310 195-531 3-351 (715)
14 PRK10919 ATP-dependent DNA hel 100.0 7.8E-32 1.7E-36 303.1 23.0 253 196-460 2-294 (672)
15 TIGR01073 pcrA ATP-dependent D 100.0 8.9E-32 1.9E-36 307.6 23.2 310 195-532 3-354 (726)
16 TIGR01074 rep ATP-dependent DN 100.0 7.4E-29 1.6E-33 282.1 23.9 307 196-530 1-349 (664)
17 KOG1806 DEAD box containing he 100.0 2.1E-29 4.6E-34 271.6 12.3 422 196-624 738-1265(1320)
18 TIGR01447 recD exodeoxyribonuc 100.0 1.2E-27 2.6E-32 262.3 17.8 63 199-262 148-215 (586)
19 TIGR01448 recD_rel helicase, p 99.9 5.5E-27 1.2E-31 264.4 20.5 294 194-609 321-701 (720)
20 PRK10875 recD exonuclease V su 99.9 5E-27 1.1E-31 257.4 18.6 64 197-261 153-220 (615)
21 COG0210 UvrD Superfamily I DNA 99.9 1.2E-25 2.7E-30 255.5 21.5 316 196-539 2-366 (655)
22 TIGR02785 addA_Gpos recombinat 99.9 4.9E-25 1.1E-29 262.7 25.3 85 368-459 387-482 (1232)
23 TIGR02768 TraA_Ti Ti-type conj 99.9 1.1E-24 2.4E-29 246.7 24.8 169 194-461 350-522 (744)
24 TIGR00609 recB exodeoxyribonuc 99.9 9E-24 1.9E-28 249.2 23.1 158 368-540 295-487 (1087)
25 PRK13826 Dtr system oriT relax 99.9 3.3E-23 7.1E-28 237.0 24.2 168 195-461 380-551 (1102)
26 PRK13909 putative recombinatio 99.9 2.6E-23 5.5E-28 242.0 21.8 151 367-539 326-488 (910)
27 PRK13889 conjugal transfer rel 99.9 5.1E-23 1.1E-27 234.7 22.3 169 195-462 345-517 (988)
28 COG1074 RecB ATP-dependent exo 99.9 3.8E-23 8.2E-28 244.2 19.5 167 368-541 377-573 (1139)
29 TIGR02784 addA_alphas double-s 99.9 2E-21 4.4E-26 232.2 29.1 159 368-533 390-595 (1141)
30 PRK10876 recB exonuclease V su 99.9 5.8E-22 1.3E-26 234.2 22.6 158 368-540 376-569 (1181)
31 COG3973 Superfamily I DNA and 99.9 3.9E-21 8.5E-26 199.6 21.5 204 368-605 527-745 (747)
32 PF13604 AAA_30: AAA domain; P 99.9 2.4E-21 5.2E-26 185.3 12.6 172 196-461 1-177 (196)
33 PRK13709 conjugal transfer nic 99.8 3.6E-18 7.9E-23 203.8 21.6 172 195-461 966-1146(1747)
34 PRK14712 conjugal transfer nic 99.8 7.7E-18 1.7E-22 198.3 21.0 168 195-456 834-1010(1623)
35 PF01443 Viral_helicase1: Vira 99.8 1.3E-18 2.8E-23 172.6 9.4 168 368-603 61-233 (234)
36 TIGR02760 TraI_TIGR conjugativ 99.7 1.9E-16 4.1E-21 194.6 19.4 64 195-258 1018-1086(1960)
37 PF00580 UvrD-helicase: UvrD/R 99.7 2.4E-17 5.1E-22 171.1 9.7 64 197-263 1-68 (315)
38 PF09848 DUF2075: Uncharacteri 99.7 2.1E-15 4.5E-20 158.3 17.1 166 213-462 2-184 (352)
39 COG0507 RecD ATP-dependent exo 99.5 1.4E-14 2.9E-19 165.9 10.1 64 195-259 318-381 (696)
40 COG3972 Superfamily I DNA and 99.5 4.3E-13 9.3E-18 137.0 16.4 353 195-605 161-575 (660)
41 PF13245 AAA_19: Part of AAA d 99.5 5.4E-14 1.2E-18 111.7 7.5 57 204-260 2-62 (76)
42 TIGR02760 TraI_TIGR conjugativ 99.4 1.1E-12 2.3E-17 161.9 13.1 65 195-259 428-493 (1960)
43 PF05970 PIF1: PIF1-like helic 99.4 5.5E-13 1.2E-17 140.2 8.2 61 196-256 1-66 (364)
44 PF02562 PhoH: PhoH-like prote 99.4 5.2E-12 1.1E-16 119.7 12.3 150 195-405 3-158 (205)
45 PF13361 UvrD_C: UvrD-like hel 99.3 3.9E-12 8.5E-17 133.8 6.6 90 437-540 1-95 (351)
46 PRK10536 hypothetical protein; 99.2 1.5E-10 3.2E-15 112.6 13.1 56 193-249 56-113 (262)
47 TIGR02773 addB_Gpos ATP-depend 99.1 2.4E-09 5.2E-14 129.2 18.4 149 369-542 196-357 (1158)
48 smart00487 DEXDc DEAD-like hel 98.9 1.3E-08 2.7E-13 97.4 13.4 70 194-263 6-77 (201)
49 cd00046 DEXDc DEAD-like helica 98.8 4.7E-08 1E-12 87.7 10.1 50 214-263 2-53 (144)
50 PF00270 DEAD: DEAD/DEAH box h 98.7 2.6E-07 5.7E-12 86.3 13.3 65 198-263 1-67 (169)
51 COG1875 NYN ribonuclease and A 98.7 2.6E-07 5.7E-12 92.4 12.4 58 192-249 224-285 (436)
52 PF13538 UvrD_C_2: UvrD-like h 98.6 9.2E-09 2E-13 87.9 1.5 51 549-603 54-104 (104)
53 PF07652 Flavi_DEAD: Flaviviru 98.6 3.2E-07 6.9E-12 80.8 9.7 53 212-264 4-57 (148)
54 PRK05580 primosome assembly pr 98.6 8.7E-07 1.9E-11 100.7 14.8 70 194-263 142-213 (679)
55 KOG1804 RNA helicase [RNA proc 98.5 3.4E-08 7.3E-13 109.7 2.0 377 195-628 119-543 (775)
56 PHA02558 uvsW UvsW helicase; P 98.5 9.7E-07 2.1E-11 97.2 12.7 68 195-263 113-181 (501)
57 cd00268 DEADc DEAD-box helicas 98.4 2.4E-06 5.1E-11 82.6 12.8 68 195-263 20-92 (203)
58 PRK10917 ATP-dependent DNA hel 98.4 2.4E-06 5.2E-11 97.5 14.6 71 193-263 258-333 (681)
59 TIGR00643 recG ATP-dependent D 98.4 2.5E-06 5.4E-11 96.6 13.8 72 192-263 231-307 (630)
60 PRK11192 ATP-dependent RNA hel 98.4 3.1E-06 6.6E-11 92.0 12.5 67 195-262 22-95 (434)
61 TIGR00580 mfd transcription-re 98.3 7.2E-06 1.6E-10 95.4 15.7 70 193-262 448-522 (926)
62 PRK02362 ski2-like helicase; P 98.3 1.9E-06 4.1E-11 99.6 10.7 69 195-263 22-90 (737)
63 PTZ00424 helicase 45; Provisio 98.3 4.1E-06 9E-11 90.0 12.7 68 195-263 49-119 (401)
64 COG1061 SSL2 DNA or RNA helica 98.3 3.2E-06 7E-11 91.3 11.7 69 192-263 32-103 (442)
65 COG1702 PhoH Phosphate starvat 98.3 2.6E-06 5.7E-11 85.3 9.6 53 195-248 127-181 (348)
66 PRK11776 ATP-dependent RNA hel 98.3 3.3E-06 7.1E-11 92.4 10.8 67 195-262 25-94 (460)
67 PRK11634 ATP-dependent RNA hel 98.3 4.5E-06 9.7E-11 93.9 11.5 67 195-262 27-96 (629)
68 PRK10590 ATP-dependent RNA hel 98.3 4.6E-06 1E-10 91.0 11.3 67 195-262 22-97 (456)
69 PRK10689 transcription-repair 98.3 7.2E-06 1.6E-10 97.5 13.4 71 192-262 596-671 (1147)
70 PRK01172 ski2-like helicase; P 98.3 5.6E-06 1.2E-10 94.9 12.0 67 195-262 21-87 (674)
71 TIGR01054 rgy reverse gyrase. 98.2 5.5E-06 1.2E-10 98.8 12.0 68 195-263 77-144 (1171)
72 PRK00254 ski2-like helicase; P 98.2 7E-06 1.5E-10 94.7 12.2 68 195-262 22-90 (720)
73 PRK04296 thymidine kinase; Pro 98.2 3.4E-06 7.4E-11 80.4 7.8 36 213-248 3-38 (190)
74 PRK04837 ATP-dependent RNA hel 98.2 1.3E-05 2.8E-10 86.8 12.6 66 195-261 29-104 (423)
75 PRK14974 cell division protein 98.2 1.9E-05 4.2E-10 81.3 12.9 56 213-268 141-199 (336)
76 TIGR01970 DEAH_box_HrpB ATP-de 98.2 4.6E-06 1E-10 95.9 9.1 62 201-262 6-67 (819)
77 PF04851 ResIII: Type III rest 98.2 4.9E-06 1.1E-10 78.6 7.7 63 196-261 3-71 (184)
78 PRK09401 reverse gyrase; Revie 98.2 1.6E-05 3.6E-10 94.7 13.3 68 195-263 79-146 (1176)
79 PRK11448 hsdR type I restricti 98.1 1.5E-05 3.3E-10 94.5 12.5 69 195-263 412-486 (1123)
80 COG4096 HsdR Type I site-speci 98.1 8.6E-06 1.9E-10 89.8 9.3 69 195-263 164-238 (875)
81 PF05127 Helicase_RecD: Helica 98.1 3.8E-07 8.2E-12 84.4 -0.9 46 216-261 1-47 (177)
82 PF13401 AAA_22: AAA domain; P 98.1 5E-06 1.1E-10 74.0 6.1 49 212-260 4-58 (131)
83 TIGR00603 rad25 DNA repair hel 98.1 3.4E-05 7.3E-10 86.6 13.6 66 195-263 254-321 (732)
84 COG4098 comFA Superfamily II D 98.1 1.3E-05 2.8E-10 79.6 8.8 73 191-263 92-167 (441)
85 PRK11664 ATP-dependent RNA hel 98.1 8E-06 1.7E-10 94.1 8.7 62 201-262 9-70 (812)
86 PRK04537 ATP-dependent RNA hel 98.1 2.6E-05 5.6E-10 87.1 12.2 68 195-263 30-107 (572)
87 TIGR00595 priA primosomal prot 98.0 2.3E-05 5E-10 86.0 10.6 48 216-263 1-48 (505)
88 PRK08084 DNA replication initi 98.0 8.1E-05 1.8E-09 73.5 13.2 59 191-249 22-82 (235)
89 PTZ00110 helicase; Provisional 98.0 5.2E-05 1.1E-09 84.3 12.9 68 195-263 151-226 (545)
90 PRK14701 reverse gyrase; Provi 98.0 6.4E-05 1.4E-09 92.0 13.8 67 196-263 79-145 (1638)
91 PRK14712 conjugal transfer nic 97.9 4.2E-05 9.2E-10 92.1 11.2 65 195-259 280-346 (1623)
92 TIGR00348 hsdR type I site-spe 97.9 6.2E-05 1.3E-09 85.6 12.0 68 197-264 239-317 (667)
93 PF00448 SRP54: SRP54-type pro 97.9 0.00015 3.2E-09 69.3 12.7 57 213-269 2-61 (196)
94 COG1198 PriA Primosomal protei 97.9 4.5E-05 9.7E-10 85.5 10.3 68 195-262 197-267 (730)
95 TIGR00064 ftsY signal recognit 97.9 0.00019 4.1E-09 72.3 13.8 58 213-270 73-133 (272)
96 PRK00771 signal recognition pa 97.9 0.00012 2.7E-09 78.1 13.0 36 213-248 96-131 (437)
97 PLN00206 DEAD-box ATP-dependen 97.9 6.8E-05 1.5E-09 83.1 11.2 66 195-261 142-217 (518)
98 COG1204 Superfamily II helicas 97.9 5.2E-05 1.1E-09 86.5 10.4 73 196-268 31-107 (766)
99 PRK13766 Hef nuclease; Provisi 97.9 0.00012 2.7E-09 85.4 13.7 65 196-262 15-80 (773)
100 PRK01297 ATP-dependent RNA hel 97.9 9.4E-05 2E-09 81.3 11.9 68 195-263 108-185 (475)
101 COG1110 Reverse gyrase [DNA re 97.9 0.00012 2.6E-09 82.5 12.2 68 195-263 81-148 (1187)
102 KOG2108 3'-5' DNA helicase [Re 97.8 3.8E-06 8.3E-11 92.7 0.3 68 193-263 10-81 (853)
103 TIGR00614 recQ_fam ATP-depende 97.8 0.00016 3.5E-09 79.2 13.0 73 195-271 10-82 (470)
104 cd03115 SRP The signal recogni 97.8 0.00034 7.4E-09 65.6 13.0 34 214-247 2-35 (173)
105 TIGR03817 DECH_helic helicase/ 97.8 0.00011 2.3E-09 84.6 11.3 68 195-263 35-104 (742)
106 PHA02653 RNA helicase NPH-II; 97.8 9.5E-05 2.1E-09 83.2 10.6 63 199-262 167-244 (675)
107 TIGR01967 DEAH_box_HrpA ATP-de 97.8 5.1E-05 1.1E-09 90.0 8.5 70 194-263 63-134 (1283)
108 PF02399 Herpes_ori_bp: Origin 97.8 0.00013 2.8E-09 81.5 11.0 55 211-265 48-103 (824)
109 COG1111 MPH1 ERCC4-like helica 97.7 0.00012 2.5E-09 76.8 9.4 122 198-385 17-147 (542)
110 PRK10416 signal recognition pa 97.7 0.00045 9.8E-09 71.1 13.7 56 213-268 115-173 (318)
111 PRK13767 ATP-dependent helicas 97.7 0.00025 5.5E-09 83.2 13.1 66 195-261 31-105 (876)
112 PRK10867 signal recognition pa 97.7 0.00035 7.7E-09 74.5 12.7 56 213-268 101-160 (433)
113 TIGR01407 dinG_rel DnaQ family 97.7 0.00056 1.2E-08 80.4 15.4 64 196-259 245-311 (850)
114 cd00561 CobA_CobO_BtuR ATP:cor 97.7 0.00089 1.9E-08 61.2 13.3 61 212-274 2-66 (159)
115 COG0552 FtsY Signal recognitio 97.7 0.00023 5.1E-09 71.5 10.1 57 213-269 140-199 (340)
116 TIGR00604 rad3 DNA repair heli 97.7 0.00021 4.5E-09 82.3 11.3 65 198-262 12-82 (705)
117 TIGR03158 cas3_cyano CRISPR-as 97.7 0.00032 6.9E-09 73.9 11.3 60 201-263 2-62 (357)
118 COG2256 MGS1 ATPase related to 97.7 9.8E-05 2.1E-09 75.5 7.0 38 371-408 106-145 (436)
119 TIGR03117 cas_csf4 CRISPR-asso 97.7 0.00018 3.9E-09 80.0 9.6 59 203-261 7-67 (636)
120 TIGR01425 SRP54_euk signal rec 97.6 0.00073 1.6E-08 71.7 13.6 45 213-257 101-148 (429)
121 PF13173 AAA_14: AAA domain 97.6 0.00044 9.6E-09 61.3 10.3 41 212-253 2-42 (128)
122 PHA03311 helicase-primase subu 97.6 0.00029 6.3E-09 77.3 10.6 44 213-261 72-115 (828)
123 cd00009 AAA The AAA+ (ATPases 97.6 0.00017 3.6E-09 65.0 7.7 56 199-254 4-61 (151)
124 TIGR01389 recQ ATP-dependent D 97.6 0.00064 1.4E-08 76.8 13.9 73 195-271 12-84 (591)
125 PRK11057 ATP-dependent DNA hel 97.6 0.00038 8.2E-09 78.6 11.9 70 195-268 24-93 (607)
126 TIGR00959 ffh signal recogniti 97.6 0.00032 6.9E-09 74.8 10.4 57 213-269 100-160 (428)
127 PRK13709 conjugal transfer nic 97.6 0.00047 1E-08 84.5 13.1 63 197-259 414-478 (1747)
128 PRK05986 cob(I)alamin adenolsy 97.6 0.0027 5.9E-08 59.5 15.3 61 211-273 21-85 (191)
129 PLN03025 replication factor C 97.6 0.00027 5.8E-09 73.3 9.6 42 198-239 18-61 (319)
130 PRK11889 flhF flagellar biosyn 97.6 0.00019 4.2E-09 74.3 8.2 47 213-259 242-291 (436)
131 PRK08181 transposase; Validate 97.6 0.00016 3.4E-09 72.4 7.4 55 194-248 85-142 (269)
132 TIGR03015 pepcterm_ATPase puta 97.6 0.00089 1.9E-08 67.6 13.1 40 198-237 25-68 (269)
133 TIGR01587 cas3_core CRISPR-ass 97.6 0.00034 7.4E-09 73.9 10.4 49 215-263 2-52 (358)
134 PRK07952 DNA replication prote 97.6 0.00016 3.4E-09 71.3 7.0 50 198-247 78-134 (244)
135 TIGR00708 cobA cob(I)alamin ad 97.6 0.0016 3.6E-08 60.1 13.1 58 212-272 5-66 (173)
136 PRK12377 putative replication 97.6 0.00017 3.6E-09 71.4 6.9 51 198-248 80-137 (248)
137 cd01124 KaiC KaiC is a circadi 97.5 0.00011 2.4E-09 69.8 5.4 50 214-264 1-50 (187)
138 PRK12723 flagellar biosynthesi 97.5 0.00027 5.9E-09 74.3 8.8 47 212-258 174-227 (388)
139 KOG0952 DNA/RNA helicase MER3/ 97.5 0.00047 1E-08 77.9 10.8 68 195-262 109-186 (1230)
140 PRK04914 ATP-dependent helicas 97.5 0.003 6.5E-08 73.8 17.7 60 194-253 150-212 (956)
141 TIGR02688 conserved hypothetic 97.5 0.001 2.2E-08 69.6 12.4 30 211-240 208-238 (449)
142 KOG2108 3'-5' DNA helicase [Re 97.5 0.00016 3.6E-09 80.2 6.8 50 366-415 438-488 (853)
143 PRK14722 flhF flagellar biosyn 97.5 0.00038 8.3E-09 72.6 9.2 37 212-248 137-175 (374)
144 PRK09694 helicase Cas3; Provis 97.5 0.00062 1.4E-08 78.8 11.6 67 195-262 285-353 (878)
145 PRK07246 bifunctional ATP-depe 97.5 0.0011 2.5E-08 76.9 13.5 61 196-257 245-308 (820)
146 PRK08074 bifunctional ATP-depe 97.5 0.0013 2.9E-08 77.7 14.3 64 196-259 257-324 (928)
147 KOG2028 ATPase related to the 97.5 0.0002 4.4E-09 71.9 6.2 34 371-404 224-259 (554)
148 PRK06526 transposase; Provisio 97.5 0.00014 3.1E-09 72.4 5.1 55 194-248 78-134 (254)
149 PF00176 SNF2_N: SNF2 family N 97.5 0.00014 3E-09 74.7 5.2 60 201-261 2-78 (299)
150 TIGR03499 FlhF flagellar biosy 97.5 0.00036 7.9E-09 70.8 8.1 36 213-248 195-232 (282)
151 PRK11131 ATP-dependent RNA hel 97.5 0.0003 6.4E-09 83.5 8.4 62 201-262 78-140 (1294)
152 COG1643 HrpA HrpA-like helicas 97.4 0.0006 1.3E-08 77.9 10.5 64 200-263 53-117 (845)
153 PRK12726 flagellar biosynthesi 97.4 0.00079 1.7E-08 69.7 10.4 54 212-265 206-262 (407)
154 PRK07994 DNA polymerase III su 97.4 0.00088 1.9E-08 74.8 11.5 36 203-238 26-64 (647)
155 PRK14956 DNA polymerase III su 97.4 0.00074 1.6E-08 72.4 10.1 33 205-237 30-65 (484)
156 TIGR02928 orc1/cdc6 family rep 97.4 0.00077 1.7E-08 71.4 10.2 41 198-238 20-66 (365)
157 COG1200 RecG RecG-like helicas 97.4 0.001 2.3E-08 72.7 11.0 72 191-262 257-333 (677)
158 PF01695 IstB_IS21: IstB-like 97.4 0.00033 7.2E-09 65.8 6.4 39 211-249 46-84 (178)
159 PRK12323 DNA polymerase III su 97.4 0.00053 1.2E-08 75.5 8.7 37 202-238 25-64 (700)
160 PRK07003 DNA polymerase III su 97.4 0.0016 3.5E-08 72.9 12.4 35 203-237 26-63 (830)
161 PRK09183 transposase/IS protei 97.4 0.00038 8.3E-09 69.7 7.0 55 193-247 81-137 (259)
162 KOG0923 mRNA splicing factor A 97.4 0.00039 8.4E-09 74.8 7.0 58 206-263 274-333 (902)
163 KOG0989 Replication factor C, 97.4 0.00023 5E-09 70.2 4.9 27 212-238 57-83 (346)
164 TIGR02621 cas3_GSU0051 CRISPR- 97.3 0.00068 1.5E-08 77.3 9.1 67 197-263 16-85 (844)
165 PRK05703 flhF flagellar biosyn 97.3 0.00072 1.6E-08 72.5 8.7 36 213-248 222-259 (424)
166 COG4889 Predicted helicase [Ge 97.3 0.0016 3.4E-08 72.3 11.2 64 194-260 159-226 (1518)
167 smart00382 AAA ATPases associa 97.3 0.00019 4.1E-09 64.0 3.5 42 212-253 2-43 (148)
168 PRK14958 DNA polymerase III su 97.3 0.0019 4.2E-08 70.8 12.0 36 202-237 25-63 (509)
169 PRK12899 secA preprotein trans 97.3 0.00087 1.9E-08 76.4 9.4 66 196-262 92-157 (970)
170 KOG0354 DEAD-box like helicase 97.3 0.0011 2.3E-08 73.7 9.8 68 194-263 60-129 (746)
171 PF06745 KaiC: KaiC; InterPro 97.3 0.00048 1E-08 67.7 6.5 53 211-264 18-71 (226)
172 PRK06893 DNA replication initi 97.3 0.0015 3.3E-08 64.2 10.0 38 212-249 39-76 (229)
173 COG1484 DnaC DNA replication p 97.3 0.00056 1.2E-08 68.1 6.7 38 212-249 105-142 (254)
174 PF00308 Bac_DnaA: Bacterial d 97.2 0.004 8.6E-08 60.7 12.1 35 214-248 36-72 (219)
175 PRK13342 recombination factor 97.2 0.0012 2.7E-08 71.0 9.1 34 369-402 92-127 (413)
176 TIGR02774 rexB_recomb ATP-depe 97.2 0.014 3E-07 70.0 18.6 156 369-543 185-346 (1076)
177 PRK14949 DNA polymerase III su 97.2 0.0017 3.7E-08 74.0 10.3 24 214-237 40-63 (944)
178 PRK14960 DNA polymerase III su 97.2 0.002 4.4E-08 71.2 10.6 36 202-237 24-62 (702)
179 cd01129 PulE-GspE PulE/GspE Th 97.2 0.00074 1.6E-08 67.8 6.7 52 196-247 63-115 (264)
180 PRK05973 replicative DNA helic 97.2 0.00071 1.5E-08 66.2 6.2 53 211-264 63-115 (237)
181 PRK12898 secA preprotein trans 97.2 0.0036 7.7E-08 69.9 12.3 65 195-262 102-166 (656)
182 PRK13833 conjugal transfer pro 97.2 0.00083 1.8E-08 68.9 6.9 52 195-246 127-180 (323)
183 PRK08691 DNA polymerase III su 97.2 0.0041 8.9E-08 69.4 12.6 37 202-238 25-64 (709)
184 TIGR03714 secA2 accessory Sec 97.1 0.0013 2.9E-08 74.2 8.8 65 196-261 68-132 (762)
185 PRK04195 replication factor C 97.1 0.0043 9.4E-08 68.2 12.7 40 197-236 18-63 (482)
186 PRK08116 hypothetical protein; 97.1 0.0012 2.6E-08 66.4 7.2 51 198-248 90-150 (268)
187 PRK08903 DnaA regulatory inact 97.1 0.0018 4E-08 63.6 8.2 58 191-248 18-78 (227)
188 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.00073 1.6E-08 66.9 5.3 53 211-264 20-72 (237)
189 COG0513 SrmB Superfamily II DN 97.1 0.0036 7.7E-08 69.2 11.0 68 195-263 50-122 (513)
190 KOG0744 AAA+-type ATPase [Post 97.1 0.00039 8.4E-09 69.0 3.1 26 211-236 176-201 (423)
191 PRK14948 DNA polymerase III su 97.1 0.0036 7.8E-08 70.3 11.1 26 213-238 39-64 (620)
192 PRK08533 flagellar accessory p 97.0 0.00098 2.1E-08 65.5 5.6 51 211-262 23-73 (230)
193 PRK12727 flagellar biosynthesi 97.0 0.0047 1E-07 66.8 11.0 36 212-247 350-387 (559)
194 TIGR02782 TrbB_P P-type conjug 97.0 0.0015 3.3E-08 66.7 7.1 55 195-249 115-171 (299)
195 PRK14087 dnaA chromosomal repl 97.0 0.0038 8.3E-08 67.6 10.5 36 213-248 142-179 (450)
196 PRK13894 conjugal transfer ATP 97.0 0.0013 2.9E-08 67.6 6.6 56 195-250 131-188 (319)
197 COG1201 Lhr Lhr-like helicases 97.0 0.0029 6.3E-08 71.9 9.6 68 195-263 21-96 (814)
198 cd01120 RecA-like_NTPases RecA 97.0 0.0013 2.8E-08 60.5 5.8 41 214-254 1-41 (165)
199 PRK14951 DNA polymerase III su 97.0 0.0055 1.2E-07 68.3 11.5 36 203-238 26-64 (618)
200 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0011 2.3E-08 66.6 5.3 39 212-250 36-74 (259)
201 KOG0333 U5 snRNP-like RNA heli 97.0 0.013 2.8E-07 61.9 13.1 262 196-565 267-556 (673)
202 PRK06835 DNA replication prote 96.9 0.0016 3.5E-08 67.2 6.7 37 212-248 183-219 (329)
203 PRK13341 recombination factor 96.9 0.0021 4.7E-08 73.2 8.2 36 369-404 109-146 (725)
204 PLN03137 ATP-dependent DNA hel 96.9 0.0055 1.2E-07 71.6 11.5 72 195-270 459-530 (1195)
205 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0032 6.9E-08 61.8 8.5 55 196-250 20-76 (226)
206 KOG0987 DNA helicase PIF1/RRM3 96.9 0.0018 4E-08 71.7 7.4 62 192-254 113-179 (540)
207 COG0541 Ffh Signal recognition 96.9 0.01 2.2E-07 61.9 12.2 57 213-269 101-160 (451)
208 PF05496 RuvB_N: Holliday junc 96.9 0.0023 5.1E-08 61.3 7.0 72 213-287 51-124 (233)
209 PF00004 AAA: ATPase family as 96.9 0.00063 1.4E-08 60.3 3.1 22 215-236 1-22 (132)
210 PRK14969 DNA polymerase III su 96.9 0.0078 1.7E-07 66.5 12.2 38 200-237 23-63 (527)
211 PRK14963 DNA polymerase III su 96.9 0.0073 1.6E-07 66.2 11.7 25 214-238 38-62 (504)
212 PRK10436 hypothetical protein; 96.9 0.0016 3.5E-08 70.2 6.6 50 195-244 200-250 (462)
213 PRK06851 hypothetical protein; 96.9 0.00091 2E-08 69.6 4.4 46 212-257 30-77 (367)
214 PRK14952 DNA polymerase III su 96.9 0.0027 5.9E-08 70.5 8.1 36 202-237 22-60 (584)
215 COG1199 DinG Rad3-related DNA 96.9 0.0075 1.6E-07 69.2 12.1 68 196-263 15-86 (654)
216 KOG0922 DEAH-box RNA helicase 96.9 0.0048 1E-07 67.1 9.6 61 203-263 57-118 (674)
217 PRK07133 DNA polymerase III su 96.9 0.0094 2E-07 67.3 12.2 37 201-237 26-65 (725)
218 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0018 3.8E-08 63.6 5.9 53 212-265 16-68 (224)
219 PF13191 AAA_16: AAA ATPase do 96.9 0.0025 5.4E-08 60.2 6.7 48 199-246 6-58 (185)
220 PRK04328 hypothetical protein; 96.9 0.0017 3.7E-08 64.7 5.8 52 212-264 23-74 (249)
221 PRK06067 flagellar accessory p 96.8 0.002 4.4E-08 63.6 6.3 54 211-265 24-77 (234)
222 KOG0991 Replication factor C, 96.8 0.0018 3.9E-08 61.4 5.3 27 212-238 48-74 (333)
223 TIGR02533 type_II_gspE general 96.8 0.0017 3.6E-08 70.9 5.8 51 195-245 224-275 (486)
224 COG4581 Superfamily II RNA hel 96.8 0.0077 1.7E-07 69.8 11.2 67 193-260 116-182 (1041)
225 COG2804 PulE Type II secretory 96.8 0.0023 4.9E-08 68.1 6.4 48 195-242 240-288 (500)
226 PRK14964 DNA polymerase III su 96.8 0.0099 2.1E-07 64.5 11.4 36 202-237 22-60 (491)
227 smart00488 DEXDc2 DEAD-like he 96.8 0.0053 1.2E-07 62.5 8.8 66 197-262 9-83 (289)
228 smart00489 DEXDc3 DEAD-like he 96.8 0.0053 1.2E-07 62.5 8.8 66 197-262 9-83 (289)
229 PRK05896 DNA polymerase III su 96.8 0.0099 2.1E-07 65.7 11.3 36 203-238 26-64 (605)
230 PRK05642 DNA replication initi 96.8 0.0048 1E-07 60.9 8.1 36 213-248 46-81 (234)
231 PRK06921 hypothetical protein; 96.8 0.0023 4.9E-08 64.3 5.9 37 212-248 117-154 (266)
232 cd01130 VirB11-like_ATPase Typ 96.7 0.0029 6.3E-08 60.1 6.3 51 195-246 8-58 (186)
233 COG0467 RAD55 RecA-superfamily 96.7 0.0026 5.7E-08 63.9 6.2 46 211-256 22-67 (260)
234 PRK06731 flhF flagellar biosyn 96.7 0.034 7.5E-07 55.7 14.0 53 212-264 75-130 (270)
235 COG0470 HolB ATPase involved i 96.7 0.0032 7E-08 65.4 7.0 26 214-239 26-51 (325)
236 TIGR02640 gas_vesic_GvpN gas v 96.7 0.0036 7.8E-08 62.9 6.6 25 211-235 20-44 (262)
237 PF13177 DNA_pol3_delta2: DNA 96.7 0.016 3.5E-07 53.6 10.4 28 213-240 20-47 (162)
238 TIGR02655 circ_KaiC circadian 96.7 0.0024 5.1E-08 70.2 5.6 53 211-264 262-314 (484)
239 TIGR02237 recomb_radB DNA repa 96.6 0.0031 6.7E-08 61.1 5.8 39 212-250 12-50 (209)
240 PF13207 AAA_17: AAA domain; P 96.6 0.0017 3.7E-08 56.7 3.7 23 214-236 1-23 (121)
241 COG1419 FlhF Flagellar GTP-bin 96.6 0.005 1.1E-07 64.0 7.5 37 212-248 203-241 (407)
242 PRK08727 hypothetical protein; 96.6 0.0027 5.8E-08 62.7 5.4 36 213-248 42-77 (233)
243 PTZ00293 thymidine kinase; Pro 96.6 0.0093 2E-07 57.0 8.8 38 213-250 5-42 (211)
244 PRK05563 DNA polymerase III su 96.6 0.015 3.2E-07 64.9 11.7 25 213-237 39-63 (559)
245 TIGR00963 secA preprotein tran 96.6 0.012 2.6E-07 66.3 10.9 62 198-262 58-119 (745)
246 cd01394 radB RadB. The archaea 96.6 0.0028 6.1E-08 61.8 5.3 37 212-248 19-55 (218)
247 TIGR02538 type_IV_pilB type IV 96.6 0.0033 7.2E-08 70.2 6.5 49 195-243 298-347 (564)
248 PHA03333 putative ATPase subun 96.6 0.063 1.4E-06 59.5 15.9 63 199-262 175-238 (752)
249 PF13481 AAA_25: AAA domain; P 96.6 0.0038 8.2E-08 59.6 6.1 51 211-262 31-91 (193)
250 PRK09111 DNA polymerase III su 96.6 0.013 2.7E-07 65.6 10.9 41 198-238 29-72 (598)
251 PRK08451 DNA polymerase III su 96.6 0.02 4.4E-07 62.7 12.2 36 203-238 24-62 (535)
252 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.003 6.5E-08 62.2 5.4 51 211-262 19-69 (229)
253 PF02689 Herpes_Helicase: Heli 96.6 0.017 3.7E-07 64.0 11.4 45 213-262 60-104 (818)
254 PRK09361 radB DNA repair and r 96.6 0.0032 7E-08 61.8 5.5 38 212-249 23-60 (225)
255 COG2805 PilT Tfp pilus assembl 96.6 0.0039 8.4E-08 61.7 5.8 30 211-240 124-153 (353)
256 cd01131 PilT Pilus retraction 96.6 0.0031 6.8E-08 60.5 5.0 36 212-247 1-37 (198)
257 PRK14873 primosome assembly pr 96.5 0.0085 1.8E-07 67.7 9.2 48 216-263 164-211 (665)
258 TIGR01650 PD_CobS cobaltochela 96.5 0.0036 7.7E-08 63.9 5.6 42 195-236 47-88 (327)
259 PRK08939 primosomal protein Dn 96.5 0.0033 7.2E-08 64.4 5.4 36 214-249 158-193 (306)
260 PRK09112 DNA polymerase III su 96.5 0.031 6.7E-07 58.5 12.6 39 200-238 30-71 (351)
261 cd01122 GP4d_helicase GP4d_hel 96.5 0.0045 9.7E-08 62.6 6.2 50 211-261 29-79 (271)
262 PF02492 cobW: CobW/HypB/UreG, 96.5 0.0054 1.2E-07 57.8 6.2 58 213-273 1-60 (178)
263 PHA00350 putative assembly pro 96.5 0.0074 1.6E-07 63.4 7.7 47 214-261 3-50 (399)
264 PRK14965 DNA polymerase III su 96.5 0.0088 1.9E-07 67.0 8.9 39 199-237 22-63 (576)
265 COG1197 Mfd Transcription-repa 96.5 0.039 8.4E-07 64.4 14.0 76 192-267 590-674 (1139)
266 KOG0328 Predicted ATP-dependen 96.5 0.0025 5.3E-08 62.0 3.7 65 198-263 51-118 (400)
267 PF00437 T2SE: Type II/IV secr 96.5 0.0033 7.1E-08 63.6 4.9 52 197-248 112-163 (270)
268 PRK13104 secA preprotein trans 96.5 0.0055 1.2E-07 70.1 7.0 48 215-262 98-145 (896)
269 TIGR02012 tigrfam_recA protein 96.5 0.0056 1.2E-07 62.7 6.5 48 212-259 55-102 (321)
270 cd00984 DnaB_C DnaB helicase C 96.5 0.0047 1E-07 61.3 5.8 48 212-260 13-61 (242)
271 PRK14959 DNA polymerase III su 96.5 0.02 4.4E-07 63.6 11.2 36 202-237 25-63 (624)
272 TIGR02881 spore_V_K stage V sp 96.4 0.0027 5.8E-08 63.9 4.0 26 213-238 43-68 (261)
273 PF07728 AAA_5: AAA domain (dy 96.4 0.0045 9.7E-08 55.6 5.0 29 215-246 2-30 (139)
274 PRK07764 DNA polymerase III su 96.4 0.023 5.1E-07 65.8 11.9 35 203-237 25-62 (824)
275 PF05673 DUF815: Protein of un 96.4 0.013 2.8E-07 57.0 8.3 58 213-270 53-111 (249)
276 PF06309 Torsin: Torsin; Inte 96.4 0.0061 1.3E-07 52.9 5.3 26 215-240 56-81 (127)
277 KOG0330 ATP-dependent RNA heli 96.4 0.012 2.6E-07 59.9 8.1 68 195-263 82-152 (476)
278 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.0057 1.2E-07 50.6 5.1 33 215-247 2-34 (99)
279 KOG0743 AAA+-type ATPase [Post 96.4 0.0018 3.9E-08 67.6 2.3 23 214-236 237-259 (457)
280 PLN03142 Probable chromatin-re 96.4 0.023 5.1E-07 66.9 11.6 65 195-260 168-238 (1033)
281 TIGR02655 circ_KaiC circadian 96.4 0.0043 9.3E-08 68.1 5.3 52 212-264 21-73 (484)
282 COG3857 AddB ATP-dependent nuc 96.4 0.16 3.4E-06 58.6 17.5 51 214-264 3-56 (1108)
283 PRK09200 preprotein translocas 96.3 0.022 4.7E-07 65.2 10.9 62 198-262 80-141 (790)
284 PRK12402 replication factor C 96.3 0.0055 1.2E-07 64.1 5.7 42 198-239 20-63 (337)
285 PF03308 ArgK: ArgK protein; 96.3 0.0042 9E-08 60.7 4.3 35 214-248 31-65 (266)
286 COG2109 BtuR ATP:corrinoid ade 96.3 0.058 1.3E-06 49.9 11.2 42 211-252 27-68 (198)
287 cd02019 NK Nucleoside/nucleoti 96.3 0.0064 1.4E-07 47.3 4.5 30 215-246 2-31 (69)
288 PRK12724 flagellar biosynthesi 96.3 0.0057 1.2E-07 64.5 5.4 36 213-248 224-260 (432)
289 PHA00729 NTP-binding motif con 96.3 0.0054 1.2E-07 59.3 4.9 24 214-237 19-42 (226)
290 PRK06851 hypothetical protein; 96.3 0.0054 1.2E-07 63.9 5.2 44 212-255 214-259 (367)
291 PF05729 NACHT: NACHT domain 96.3 0.0044 9.4E-08 57.2 4.1 27 214-240 2-28 (166)
292 cd00983 recA RecA is a bacter 96.2 0.0087 1.9E-07 61.4 6.4 48 212-259 55-102 (325)
293 COG3854 SpoIIIAA ncharacterize 96.2 0.026 5.7E-07 53.7 8.9 37 214-250 139-180 (308)
294 PRK13768 GTPase; Provisional 96.2 0.0058 1.3E-07 61.0 4.9 35 214-248 4-38 (253)
295 PF13671 AAA_33: AAA domain; P 96.2 0.0034 7.4E-08 56.6 3.0 22 214-235 1-22 (143)
296 PRK05707 DNA polymerase III su 96.2 0.028 6.1E-07 58.2 10.1 26 213-238 23-48 (328)
297 TIGR02525 plasmid_TraJ plasmid 96.2 0.011 2.5E-07 61.9 7.2 48 196-246 136-185 (372)
298 PRK07940 DNA polymerase III su 96.2 0.032 6.8E-07 59.3 10.5 25 214-238 38-62 (394)
299 cd00544 CobU Adenosylcobinamid 96.2 0.0043 9.3E-08 57.7 3.6 46 214-262 1-46 (169)
300 TIGR02880 cbbX_cfxQ probable R 96.2 0.0043 9.3E-08 63.1 3.9 27 214-240 60-86 (284)
301 PF03205 MobB: Molybdopterin g 96.2 0.0075 1.6E-07 54.2 5.0 38 213-250 1-38 (140)
302 PRK00411 cdc6 cell division co 96.2 0.0091 2E-07 64.0 6.6 42 199-240 36-83 (394)
303 COG1444 Predicted P-loop ATPas 96.2 0.057 1.2E-06 60.9 12.8 66 195-260 210-281 (758)
304 COG1618 Predicted nucleotide k 96.2 0.0064 1.4E-07 54.6 4.3 29 215-243 8-36 (179)
305 PRK11331 5-methylcytosine-spec 96.1 0.008 1.7E-07 63.9 5.6 41 197-237 179-219 (459)
306 COG4088 Predicted nucleotide k 96.1 0.0051 1.1E-07 57.4 3.6 35 213-247 2-36 (261)
307 PRK10865 protein disaggregatio 96.1 0.021 4.6E-07 66.9 9.6 28 211-238 198-225 (857)
308 PRK14723 flhF flagellar biosyn 96.1 0.023 4.9E-07 64.5 9.3 45 213-257 186-235 (767)
309 PRK09302 circadian clock prote 96.1 0.0084 1.8E-07 66.5 5.9 53 211-264 272-324 (509)
310 TIGR00176 mobB molybdopterin-g 96.1 0.0089 1.9E-07 54.8 5.0 35 215-249 2-36 (155)
311 PRK11823 DNA repair protein Ra 96.0 0.01 2.2E-07 64.3 5.9 51 212-263 80-130 (446)
312 PF13238 AAA_18: AAA domain; P 96.0 0.0058 1.3E-07 53.7 3.5 22 215-236 1-22 (129)
313 PF01078 Mg_chelatase: Magnesi 96.0 0.009 2E-07 56.8 4.8 35 199-233 9-43 (206)
314 cd01121 Sms Sms (bacterial rad 96.0 0.011 2.4E-07 62.2 5.9 50 212-262 82-131 (372)
315 COG1102 Cmk Cytidylate kinase 96.0 0.0054 1.2E-07 55.1 3.1 23 214-236 2-24 (179)
316 CHL00181 cbbX CbbX; Provisiona 96.0 0.0064 1.4E-07 61.8 4.1 26 214-239 61-86 (287)
317 PF03266 NTPase_1: NTPase; In 96.0 0.0066 1.4E-07 56.4 3.8 29 215-243 2-30 (168)
318 TIGR00750 lao LAO/AO transport 96.0 0.01 2.2E-07 60.9 5.5 37 212-248 34-70 (300)
319 PRK09354 recA recombinase A; P 96.0 0.014 3E-07 60.4 6.3 48 212-259 60-107 (349)
320 cd03114 ArgK-like The function 95.9 0.011 2.5E-07 53.7 5.1 35 215-249 2-36 (148)
321 PRK10865 protein disaggregatio 95.9 0.034 7.3E-07 65.3 10.1 35 213-247 599-633 (857)
322 PRK08769 DNA polymerase III su 95.9 0.04 8.6E-07 56.7 9.4 44 369-412 113-163 (319)
323 PRK08058 DNA polymerase III su 95.9 0.046 9.9E-07 56.9 10.0 26 213-238 29-54 (329)
324 TIGR03345 VI_ClpV1 type VI sec 95.9 0.038 8.2E-07 64.7 10.1 34 214-247 598-631 (852)
325 TIGR00150 HI0065_YjeE ATPase, 95.9 0.016 3.4E-07 51.3 5.4 37 211-250 21-57 (133)
326 PF12846 AAA_10: AAA-like doma 95.9 0.024 5.1E-07 58.1 7.7 57 212-272 1-57 (304)
327 COG1703 ArgK Putative periplas 95.8 0.019 4.1E-07 57.0 6.4 34 214-247 53-86 (323)
328 KOG0342 ATP-dependent RNA heli 95.8 0.18 3.8E-06 53.3 13.5 65 195-260 103-174 (543)
329 PRK13900 type IV secretion sys 95.8 0.015 3.2E-07 60.4 5.8 46 200-246 148-193 (332)
330 PRK12422 chromosomal replicati 95.8 0.017 3.6E-07 62.5 6.4 36 213-248 142-177 (445)
331 PRK09435 membrane ATPase/prote 95.8 0.013 2.8E-07 60.4 5.3 35 214-248 58-92 (332)
332 KOG0335 ATP-dependent RNA heli 95.8 0.021 4.5E-07 60.6 6.8 68 195-263 95-175 (482)
333 PHA03368 DNA packaging termina 95.8 0.074 1.6E-06 58.8 11.1 50 212-261 254-305 (738)
334 KOG0331 ATP-dependent RNA heli 95.8 0.036 7.9E-07 59.8 8.7 68 195-263 112-188 (519)
335 PTZ00112 origin recognition co 95.8 0.013 2.9E-07 66.3 5.6 41 198-238 760-807 (1164)
336 TIGR01420 pilT_fam pilus retra 95.8 0.014 3E-07 61.2 5.5 37 211-247 121-158 (343)
337 PRK03992 proteasome-activating 95.8 0.013 2.9E-07 62.4 5.4 23 213-235 166-188 (389)
338 KOG4284 DEAD box protein [Tran 95.7 0.0061 1.3E-07 65.7 2.7 65 198-263 49-116 (980)
339 TIGR00635 ruvB Holliday juncti 95.7 0.013 2.8E-07 60.4 5.1 24 213-236 31-54 (305)
340 PRK13764 ATPase; Provisional 95.7 0.018 3.9E-07 63.9 6.5 35 210-244 255-289 (602)
341 TIGR00362 DnaA chromosomal rep 95.7 0.039 8.3E-07 59.4 8.9 36 213-248 137-174 (405)
342 TIGR00416 sms DNA repair prote 95.7 0.017 3.6E-07 62.7 6.0 51 211-262 93-143 (454)
343 PF04665 Pox_A32: Poxvirus A32 95.7 0.012 2.7E-07 57.5 4.5 35 214-248 15-49 (241)
344 PRK07399 DNA polymerase III su 95.7 0.089 1.9E-06 54.2 11.0 28 213-240 27-54 (314)
345 PHA02244 ATPase-like protein 95.7 0.016 3.5E-07 60.0 5.4 33 203-235 110-142 (383)
346 PHA02544 44 clamp loader, smal 95.7 0.025 5.5E-07 58.6 7.1 49 197-248 25-76 (316)
347 TIGR03346 chaperone_ClpB ATP-d 95.7 0.068 1.5E-06 63.0 11.3 27 212-238 194-220 (852)
348 PRK09751 putative ATP-dependen 95.7 0.033 7.2E-07 67.9 8.8 45 217-261 1-58 (1490)
349 KOG1533 Predicted GTPase [Gene 95.7 0.0092 2E-07 56.8 3.2 32 215-246 5-36 (290)
350 PF12775 AAA_7: P-loop contain 95.6 0.013 2.9E-07 59.0 4.6 59 204-262 25-83 (272)
351 PRK00149 dnaA chromosomal repl 95.6 0.037 8E-07 60.3 8.5 37 213-249 149-187 (450)
352 PRK07414 cob(I)yrinic acid a,c 95.6 0.55 1.2E-05 43.7 14.8 61 211-273 20-84 (178)
353 TIGR02639 ClpA ATP-dependent C 95.6 0.079 1.7E-06 61.4 11.5 28 212-239 203-230 (731)
354 PRK05541 adenylylsulfate kinas 95.6 0.019 4.1E-07 53.9 5.4 35 212-246 7-41 (176)
355 COG1474 CDC6 Cdc6-related prot 95.6 0.016 3.6E-07 60.8 5.4 42 198-239 22-69 (366)
356 PRK00080 ruvB Holliday junctio 95.6 0.015 3.2E-07 60.7 5.0 24 213-236 52-75 (328)
357 PRK07471 DNA polymerase III su 95.6 0.13 2.7E-06 54.3 11.9 37 202-238 28-67 (365)
358 PF03029 ATP_bind_1: Conserved 95.6 0.0095 2.1E-07 58.8 3.3 30 217-246 1-30 (238)
359 TIGR02524 dot_icm_DotB Dot/Icm 95.6 0.02 4.4E-07 60.0 5.9 28 211-238 133-160 (358)
360 PRK00889 adenylylsulfate kinas 95.6 0.019 4.1E-07 53.8 5.3 34 213-246 5-38 (175)
361 cd01393 recA_like RecA is a b 95.6 0.015 3.3E-07 56.9 4.8 40 211-250 18-63 (226)
362 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.0096 2.1E-07 56.3 3.2 23 214-236 1-23 (183)
363 KOG1131 RNA polymerase II tran 95.6 0.13 2.8E-06 54.6 11.4 64 197-260 17-87 (755)
364 PRK10463 hydrogenase nickel in 95.6 0.041 8.9E-07 55.4 7.7 73 198-272 88-162 (290)
365 PRK07667 uridine kinase; Provi 95.6 0.021 4.6E-07 54.5 5.5 37 214-250 19-55 (193)
366 PRK14088 dnaA chromosomal repl 95.5 0.027 5.8E-07 61.0 6.9 35 214-248 132-168 (440)
367 cd02034 CooC The accessory pro 95.5 0.022 4.7E-07 49.4 5.0 44 215-261 2-45 (116)
368 PRK10751 molybdopterin-guanine 95.5 0.02 4.3E-07 53.2 5.0 39 212-250 6-44 (173)
369 COG0378 HypB Ni2+-binding GTPa 95.5 0.014 3E-07 54.4 3.9 54 214-271 15-71 (202)
370 PRK09302 circadian clock prote 95.5 0.017 3.7E-07 64.1 5.4 53 211-264 30-83 (509)
371 TIGR03574 selen_PSTK L-seryl-t 95.5 0.017 3.6E-07 57.7 4.8 33 214-246 1-33 (249)
372 PRK05800 cobU adenosylcobinami 95.5 0.012 2.6E-07 54.8 3.5 47 214-263 3-49 (170)
373 PF00910 RNA_helicase: RNA hel 95.5 0.012 2.7E-07 50.1 3.3 24 216-239 2-25 (107)
374 PRK14962 DNA polymerase III su 95.5 0.019 4.2E-07 62.4 5.4 36 202-237 23-61 (472)
375 COG1222 RPT1 ATP-dependent 26S 95.5 0.019 4E-07 58.3 4.8 21 214-234 187-207 (406)
376 PRK13531 regulatory ATPase Rav 95.5 0.019 4.2E-07 61.6 5.2 34 204-237 31-64 (498)
377 TIGR01360 aden_kin_iso1 adenyl 95.4 0.013 2.8E-07 55.5 3.6 25 212-236 3-27 (188)
378 PRK06762 hypothetical protein; 95.4 0.026 5.7E-07 52.3 5.5 40 213-260 3-42 (166)
379 PF13555 AAA_29: P-loop contai 95.4 0.02 4.3E-07 43.2 3.7 26 213-238 24-49 (62)
380 COG0556 UvrB Helicase subunit 95.4 0.05 1.1E-06 57.9 7.9 62 199-263 15-80 (663)
381 TIGR01242 26Sp45 26S proteasom 95.4 0.02 4.4E-07 60.6 5.2 23 214-236 158-180 (364)
382 PRK08118 topology modulation p 95.4 0.013 2.8E-07 54.5 3.3 23 214-236 3-25 (167)
383 cd02028 UMPK_like Uridine mono 95.4 0.021 4.6E-07 53.7 4.8 35 214-248 1-35 (179)
384 smart00763 AAA_PrkA PrkA AAA d 95.4 0.023 5E-07 58.8 5.3 42 196-237 55-103 (361)
385 KOG0343 RNA Helicase [RNA proc 95.4 0.021 4.5E-07 60.7 5.0 67 195-262 90-163 (758)
386 TIGR00041 DTMP_kinase thymidyl 95.4 0.025 5.4E-07 54.0 5.3 35 213-247 4-38 (195)
387 PRK11034 clpA ATP-dependent Cl 95.3 0.075 1.6E-06 61.1 9.8 24 213-236 489-512 (758)
388 PRK06696 uridine kinase; Valid 95.3 0.025 5.5E-07 55.3 5.2 35 213-247 23-57 (223)
389 KOG3347 Predicted nucleotide k 95.3 0.015 3.3E-07 51.5 3.1 22 212-233 7-28 (176)
390 PRK13851 type IV secretion sys 95.3 0.024 5.1E-07 59.0 5.2 50 198-248 148-197 (344)
391 TIGR03689 pup_AAA proteasome A 95.3 0.022 4.7E-07 62.2 5.0 25 213-237 217-241 (512)
392 COG1205 Distinct helicase fami 95.3 0.12 2.7E-06 60.2 11.5 69 194-263 68-138 (851)
393 PF07726 AAA_3: ATPase family 95.3 0.0092 2E-07 52.0 1.8 36 371-407 64-102 (131)
394 TIGR03346 chaperone_ClpB ATP-d 95.3 0.052 1.1E-06 63.9 8.6 38 213-250 596-633 (852)
395 PRK14494 putative molybdopteri 95.2 0.028 6.1E-07 54.7 5.2 38 214-251 3-40 (229)
396 PRK14493 putative bifunctional 95.2 0.025 5.4E-07 56.9 5.0 36 214-250 3-38 (274)
397 PTZ00454 26S protease regulato 95.2 0.024 5.3E-07 60.2 5.2 23 213-235 180-202 (398)
398 PF08433 KTI12: Chromatin asso 95.2 0.025 5.5E-07 56.8 5.0 35 213-247 2-36 (270)
399 PTZ00361 26 proteosome regulat 95.2 0.027 5.8E-07 60.5 5.4 24 213-236 218-241 (438)
400 cd03116 MobB Molybdenum is an 95.2 0.035 7.6E-07 51.0 5.5 37 214-250 3-39 (159)
401 cd02027 APSK Adenosine 5'-phos 95.2 0.027 5.9E-07 51.3 4.8 33 214-246 1-33 (149)
402 PF03215 Rad17: Rad17 cell cyc 95.2 0.026 5.7E-07 61.9 5.5 25 212-236 45-69 (519)
403 KOG0345 ATP-dependent RNA heli 95.2 0.21 4.6E-06 52.4 11.5 65 195-260 27-99 (567)
404 PRK00440 rfc replication facto 95.2 0.031 6.6E-07 57.9 5.7 41 199-239 23-65 (319)
405 COG0714 MoxR-like ATPases [Gen 95.2 0.029 6.2E-07 58.5 5.5 54 198-252 29-82 (329)
406 PRK06871 DNA polymerase III su 95.2 0.23 5E-06 51.2 11.9 42 196-238 6-50 (325)
407 TIGR02639 ClpA ATP-dependent C 95.2 0.092 2E-06 60.8 10.1 23 214-236 486-508 (731)
408 PRK06964 DNA polymerase III su 95.1 0.18 3.9E-06 52.4 11.1 45 368-412 131-182 (342)
409 PRK06995 flhF flagellar biosyn 95.1 0.027 5.9E-07 60.9 5.2 35 213-247 257-293 (484)
410 PRK08233 hypothetical protein; 95.1 0.016 3.5E-07 54.5 3.0 24 213-236 4-27 (182)
411 PRK14961 DNA polymerase III su 95.1 0.026 5.7E-07 59.6 4.9 24 214-237 40-63 (363)
412 COG1936 Predicted nucleotide k 95.1 0.017 3.7E-07 52.7 2.9 20 214-233 2-21 (180)
413 PF01583 APS_kinase: Adenylyls 95.1 0.039 8.6E-07 50.2 5.3 35 214-248 4-38 (156)
414 cd02021 GntK Gluconate kinase 95.1 0.017 3.6E-07 52.7 2.9 22 214-235 1-22 (150)
415 KOG0951 RNA helicase BRR2, DEA 95.1 0.076 1.6E-06 61.8 8.5 76 195-270 308-398 (1674)
416 PF02572 CobA_CobO_BtuR: ATP:c 95.0 0.5 1.1E-05 43.8 12.5 59 212-272 3-65 (172)
417 PRK06620 hypothetical protein; 95.0 0.018 4E-07 55.8 3.2 19 213-231 45-63 (214)
418 PRK00131 aroK shikimate kinase 95.0 0.022 4.7E-07 53.2 3.6 25 212-236 4-28 (175)
419 cd00550 ArsA_ATPase Oxyanion-t 95.0 0.029 6.3E-07 56.0 4.7 35 214-248 2-36 (254)
420 cd02117 NifH_like This family 95.0 0.036 7.9E-07 53.8 5.2 32 215-246 3-34 (212)
421 PF05707 Zot: Zonular occluden 95.0 0.021 4.6E-07 54.5 3.5 32 214-245 2-34 (193)
422 cd01672 TMPK Thymidine monopho 95.0 0.038 8.3E-07 52.7 5.3 34 214-247 2-35 (200)
423 COG2255 RuvB Holliday junction 95.0 0.041 8.9E-07 54.2 5.4 25 212-237 52-76 (332)
424 cd02025 PanK Pantothenate kina 95.0 0.031 6.6E-07 54.5 4.6 34 215-248 2-37 (220)
425 PRK03839 putative kinase; Prov 95.0 0.022 4.8E-07 53.7 3.5 23 214-236 2-24 (180)
426 PRK12326 preprotein translocas 95.0 0.073 1.6E-06 59.7 8.0 41 221-261 100-140 (764)
427 PF13521 AAA_28: AAA domain; P 94.9 0.02 4.2E-07 53.0 3.0 21 215-235 2-22 (163)
428 PRK14531 adenylate kinase; Pro 94.9 0.022 4.9E-07 53.8 3.4 22 214-235 4-25 (183)
429 COG0529 CysC Adenylylsulfate k 94.9 0.093 2E-06 48.1 7.0 58 195-260 8-66 (197)
430 KOG0781 Signal recognition par 94.9 0.14 3.1E-06 53.8 9.3 44 214-257 380-426 (587)
431 PRK14489 putative bifunctional 94.8 0.07 1.5E-06 56.4 7.3 62 213-274 206-272 (366)
432 PF00406 ADK: Adenylate kinase 94.8 0.021 4.7E-07 52.0 3.0 20 217-236 1-20 (151)
433 PRK04040 adenylate kinase; Pro 94.8 0.025 5.5E-07 53.6 3.5 24 213-236 3-26 (188)
434 cd01123 Rad51_DMC1_radA Rad51_ 94.8 0.028 6.1E-07 55.4 4.0 40 211-250 18-63 (235)
435 PRK14530 adenylate kinase; Pro 94.8 0.028 6E-07 54.7 3.9 25 212-236 3-27 (215)
436 PRK14527 adenylate kinase; Pro 94.8 0.027 5.9E-07 53.6 3.8 25 212-236 6-30 (191)
437 PF06068 TIP49: TIP49 C-termin 94.8 0.036 7.8E-07 57.0 4.7 26 211-236 49-74 (398)
438 PRK14532 adenylate kinase; Pro 94.8 0.022 4.8E-07 54.1 3.0 21 215-235 3-23 (188)
439 PRK06547 hypothetical protein; 94.8 0.039 8.4E-07 51.5 4.6 23 213-235 16-38 (172)
440 COG1223 Predicted ATPase (AAA+ 94.8 0.023 5E-07 55.0 3.0 23 211-233 150-172 (368)
441 PF10412 TrwB_AAD_bind: Type I 94.8 0.05 1.1E-06 57.9 6.0 44 213-256 16-59 (386)
442 cd03112 CobW_like The function 94.8 0.056 1.2E-06 49.7 5.6 56 213-272 1-58 (158)
443 cd01125 repA Hexameric Replica 94.7 0.053 1.1E-06 53.7 5.8 50 213-263 2-63 (239)
444 COG3267 ExeA Type II secretory 94.7 0.19 4.1E-06 49.0 9.2 49 211-260 50-99 (269)
445 TIGR02322 phosphon_PhnN phosph 94.7 0.035 7.5E-07 52.2 4.2 24 213-236 2-25 (179)
446 PLN02200 adenylate kinase fami 94.7 0.027 5.8E-07 55.5 3.5 23 213-235 44-66 (234)
447 cd00227 CPT Chloramphenicol (C 94.7 0.032 6.9E-07 52.4 3.9 25 212-236 2-26 (175)
448 cd01428 ADK Adenylate kinase ( 94.7 0.025 5.5E-07 53.8 3.2 21 215-235 2-22 (194)
449 PHA02533 17 large terminase pr 94.7 0.36 7.8E-06 53.4 12.5 67 194-261 57-125 (534)
450 PRK07261 topology modulation p 94.7 0.028 6E-07 52.6 3.3 21 215-235 3-23 (171)
451 cd02023 UMPK Uridine monophosp 94.7 0.039 8.5E-07 52.8 4.4 33 214-248 1-33 (198)
452 PRK08154 anaerobic benzoate ca 94.6 0.054 1.2E-06 55.8 5.7 43 194-236 105-157 (309)
453 PHA02542 41 41 helicase; Provi 94.6 0.054 1.2E-06 59.0 5.8 50 211-261 189-238 (473)
454 COG4962 CpaF Flp pilus assembl 94.6 0.05 1.1E-06 55.4 5.1 54 195-249 156-209 (355)
455 cd02035 ArsA ArsA ATPase funct 94.6 0.045 9.7E-07 53.3 4.7 35 214-248 1-35 (217)
456 KOG0780 Signal recognition par 94.6 0.2 4.2E-06 51.5 9.2 57 212-268 101-160 (483)
457 PF03796 DnaB_C: DnaB-like hel 94.6 0.11 2.4E-06 52.1 7.7 50 211-261 18-68 (259)
458 TIGR01313 therm_gnt_kin carboh 94.6 0.023 4.9E-07 52.6 2.5 21 216-236 2-22 (163)
459 cd02020 CMPK Cytidine monophos 94.5 0.031 6.7E-07 50.4 3.3 23 214-236 1-23 (147)
460 PRK14528 adenylate kinase; Pro 94.5 0.031 6.8E-07 53.0 3.4 22 214-235 3-24 (186)
461 cd02037 MRP-like MRP (Multiple 94.5 0.05 1.1E-06 50.7 4.7 34 214-247 2-35 (169)
462 COG1202 Superfamily II helicas 94.5 0.058 1.3E-06 57.8 5.5 79 194-272 214-298 (830)
463 KOG0925 mRNA splicing factor A 94.5 0.25 5.4E-06 52.1 9.9 64 200-263 50-114 (699)
464 COG3911 Predicted ATPase [Gene 94.5 0.034 7.3E-07 49.2 3.1 33 213-249 10-42 (183)
465 PRK11747 dinG ATP-dependent DN 94.5 0.12 2.5E-06 59.5 8.5 62 198-259 27-97 (697)
466 PRK02496 adk adenylate kinase; 94.5 0.032 7E-07 52.7 3.4 22 215-236 4-25 (184)
467 PRK09519 recA DNA recombinatio 94.5 0.064 1.4E-06 61.2 6.2 49 212-260 60-108 (790)
468 PRK12608 transcription termina 94.5 0.056 1.2E-06 56.3 5.2 58 204-261 123-186 (380)
469 PRK06761 hypothetical protein; 94.4 0.04 8.7E-07 55.4 4.1 33 213-245 4-36 (282)
470 PRK06645 DNA polymerase III su 94.4 0.046 1E-06 59.8 4.8 25 213-237 44-68 (507)
471 TIGR03600 phage_DnaB phage rep 94.4 0.061 1.3E-06 58.1 5.8 50 211-261 193-243 (421)
472 PF02374 ArsA_ATPase: Anion-tr 94.4 0.058 1.2E-06 55.4 5.3 46 213-258 2-49 (305)
473 COG1224 TIP49 DNA helicase TIP 94.4 0.033 7.2E-07 56.4 3.3 25 212-236 65-89 (450)
474 KOG0390 DNA repair protein, SN 94.4 0.67 1.5E-05 52.7 13.9 65 194-259 236-316 (776)
475 COG0563 Adk Adenylate kinase a 94.4 0.034 7.5E-07 52.1 3.3 21 215-235 3-23 (178)
476 KOG0733 Nuclear AAA ATPase (VC 94.4 0.025 5.4E-07 61.1 2.5 23 214-236 225-247 (802)
477 PRK05480 uridine/cytidine kina 94.4 0.053 1.1E-06 52.4 4.7 34 212-247 6-39 (209)
478 PF00485 PRK: Phosphoribulokin 94.4 0.05 1.1E-06 52.0 4.4 29 214-242 1-29 (194)
479 PRK00279 adk adenylate kinase; 94.4 0.035 7.5E-07 54.0 3.4 21 215-235 3-23 (215)
480 PF01656 CbiA: CobQ/CobB/MinD/ 94.4 0.066 1.4E-06 50.8 5.3 35 214-248 1-35 (195)
481 KOG0385 Chromatin remodeling c 94.3 0.13 2.8E-06 57.1 7.8 147 195-404 166-329 (971)
482 PRK04301 radA DNA repair and r 94.3 0.059 1.3E-06 55.8 5.1 40 211-250 101-146 (317)
483 PLN00020 ribulose bisphosphate 94.3 0.036 7.7E-07 57.2 3.3 25 212-236 148-172 (413)
484 TIGR01351 adk adenylate kinase 94.2 0.035 7.7E-07 53.7 3.1 21 215-235 2-22 (210)
485 KOG0338 ATP-dependent RNA heli 94.2 0.13 2.8E-06 54.5 7.2 60 199-259 206-271 (691)
486 KOG0348 ATP-dependent RNA heli 94.2 0.21 4.5E-06 53.3 8.7 67 195-262 158-233 (708)
487 PRK13947 shikimate kinase; Pro 94.2 0.041 9E-07 51.2 3.3 23 214-236 3-25 (171)
488 PRK07993 DNA polymerase III su 94.2 0.21 4.6E-06 51.9 8.9 45 368-412 107-158 (334)
489 PRK13973 thymidylate kinase; P 94.2 0.12 2.5E-06 50.3 6.5 35 213-247 4-38 (213)
490 PRK14957 DNA polymerase III su 94.1 0.068 1.5E-06 59.0 5.4 34 204-237 27-63 (546)
491 CHL00195 ycf46 Ycf46; Provisio 94.1 0.038 8.2E-07 60.3 3.4 23 213-235 260-282 (489)
492 PRK12906 secA preprotein trans 94.1 0.16 3.6E-06 57.9 8.5 45 216-260 97-141 (796)
493 TIGR00764 lon_rel lon-related 94.1 0.068 1.5E-06 60.2 5.5 54 203-256 28-82 (608)
494 PRK13107 preprotein translocas 94.1 0.13 2.7E-06 59.2 7.5 48 215-262 98-145 (908)
495 PRK14955 DNA polymerase III su 94.1 0.069 1.5E-06 57.1 5.3 36 202-237 25-63 (397)
496 TIGR03819 heli_sec_ATPase heli 94.1 0.078 1.7E-06 55.2 5.5 50 196-246 162-211 (340)
497 TIGR03575 selen_PSTK_euk L-ser 94.1 0.062 1.4E-06 55.6 4.7 37 214-250 1-38 (340)
498 PRK12904 preprotein translocas 94.1 0.2 4.4E-06 57.5 9.1 48 215-262 97-144 (830)
499 PRK08506 replicative DNA helic 94.0 0.078 1.7E-06 58.0 5.6 51 211-262 191-241 (472)
500 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.0 0.063 1.4E-06 51.7 4.4 39 212-250 38-80 (205)
No 1
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-116 Score=905.38 Aligned_cols=619 Identities=49% Similarity=0.749 Sum_probs=568.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecCCCCCCCCCCCCCCEE
Q 006652 16 QEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVV 95 (637)
Q Consensus 16 ~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 95 (637)
++|..++.+||++|+++|++.....+.+.+++.+++.|.+|.+|.++..++|++|+.++.|+... ..+|++.|.+||+|
T Consensus 3 ~~f~sk~~~ll~~er~~ei~~t~~~~~~~~ie~l~~~g~~i~nl~~v~~~tGl~g~~li~f~~~~-~~lp~~~~~~gd~v 81 (649)
T KOG1803|consen 3 EEFVSKMSELLDHERKAEISVTEKSLDNVPIEALQRKGLAILNLWLVSVRTGLGGKSLIVFSKNR-EVLPSNSFGPGDVV 81 (649)
T ss_pred hHHHHHHHHHHHhhhhcchhhhhHhhhcCCHHHHHhccceeeeEEEEEEeecccceEEEEeccCc-cccCcCCCCCCcEE
Confidence 78999999999999999999999999999999999999999999999999999999999999877 78999999999999
Q ss_pred EEeeCCCCCCCCceEEEEEEEEeCCEEEEEecCCCCCCCCC-CeEEEEecchhhHHHHHHHHHHHHhcccCCCCcCcccc
Q 006652 96 VLKPNKADLGSPALGQGVVYRLKDSSITVAFDDIPEEGLNS-PLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPV 174 (637)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~~~~~~~~~-~~~l~~~~~~~t~~r~~~al~~~~~~~~~~~~~~l~~~ 174 (637)
+|...+...+..+..+|+|+++....|++.|++..+..... .+++.++.|.+||+||..++..++......|...++..
T Consensus 82 ~lr~~~~~~~~~~~~~GvV~~~~~~~i~~a~ee~~d~~~~~~~l~l~kl~n~vty~R~~~~~i~l~~~~~~~~~~~vv~~ 161 (649)
T KOG1803|consen 82 WLRTDKLNNKSKPCTEGVVYRVAEDSIDVAFEEEVDKPLTLSSLRLLKLENKVTYRRMKDTMICLSKFSNPGPSSDVVET 161 (649)
T ss_pred EEEcccccccCcccccceeEeeccchhhHhHHhhhcccchhhHHHHHHhhhhhhheecHHHHhhHhhhcCccchhhhHHH
Confidence 99855444555667899999999999999998887764433 78888999999999999999999885444577788889
Q ss_pred ccCCCCCCccc--ccccCCCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHH
Q 006652 175 LFGEQKPTVLK--KDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIA 252 (637)
Q Consensus 175 l~~~~~p~~~~--~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~A 252 (637)
+++...|.... .......++..||.+|++||..++..+++.+||||||||||+|++++|.++++++++||||||||.|
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~A 241 (649)
T KOG1803|consen 162 LFGDRKPIPSPNIEIKKITFFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVA 241 (649)
T ss_pred HhccccCCCCchhhhcccccCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHH
Confidence 99987765544 3345677899999999999999998779999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceEEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q 006652 253 VDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLS 332 (637)
Q Consensus 253 vd~l~~rL~~~~~~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 332 (637)
||||.+||.-.+..++|+|++++..+.+..++++......++....++++++++.......+.++...++.++++++.++
T Consensus 242 VdNiverl~~~~~~l~R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lr 321 (649)
T KOG1803|consen 242 VDNIVERLTHLKLNLVRVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLR 321 (649)
T ss_pred HHHHHHHhcccccchhhcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHhCCeEEEeCCCCCCCccccCH
Q 006652 333 KEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSV 412 (637)
Q Consensus 333 ~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~~~~vlvGD~~QL~p~v~s~ 412 (637)
++++++++....+++.+++||++|..++..+.+.+..||+||||||+|++||+||+|+++++++||+|||+||||++.|.
T Consensus 322 kdl~kre~~~v~eii~n~~VVfaTl~ga~~~~~~~~~fD~vIIDEaaQamE~~cWipvlk~kk~ILaGDp~QLpP~v~S~ 401 (649)
T KOG1803|consen 322 KDLRKRERKTVKEIISNSRVVFATLGGALDRLLRKRTFDLVIIDEAAQAMEPQCWIPVLKGKKFILAGDPKQLPPTVLSD 401 (649)
T ss_pred HHHHHHHHHHHHHhhcccceEEEeccchhhhhhcccCCCEEEEehhhhhccchhhhHHhcCCceEEeCCcccCCcccccc
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCC----------CCccCCCCCCcEEEE
Q 006652 413 EAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS----------GVKRTSSTEPTLLLI 482 (637)
Q Consensus 413 ~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~----------~~~~~~~~~~~~~~i 482 (637)
.+...|+..|+|+|+.+.+++....+|++|||||..|+.|+|..||+|+++++.. .....+....|++|+
T Consensus 402 ~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn~~Im~wsn~~fY~~qlka~~~v~~~lL~dl~~v~~t~~t~~Plvlv 481 (649)
T KOG1803|consen 402 KAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMNEKIMNWSNEVFYNGQLKAASSVASHLLRDLPNVLATESTKSPLVLV 481 (649)
T ss_pred hhhhccchhhHHHHHHHHcccchhhhhhhhhcchHHHhhCcHhhhcCCeeeecchhhhhhhhcccCCCCccccCCcEEEE
Confidence 9999999999999999999998889999999999999999999999999998876 223345578899999
Q ss_pred EccCCcccccccCC---CCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhccCCCCCCceeccCCCC
Q 006652 483 DIAGCDMEEKKDEE---DSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGF 559 (637)
Q Consensus 483 d~~~~~~~~~~~~~---~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~i~V~Tvd~~ 559 (637)
|+.|+...+..... .|++|.+||+.|..+++.|+..|++++||||||||++|+.++|+. ......+++|+|||+|
T Consensus 482 DT~~~~~~e~~~e~~~~~S~~N~gEa~Iv~~Hv~~L~~~gV~p~dIaVIsPY~aQv~llR~~--~~~~~~~veV~TVD~f 559 (649)
T KOG1803|consen 482 DTQGEKDEEKRGEEEELGSKYNEGEAKIVMEHVKRLLEAGVQPSDIAVISPYNAQVSLLREE--DEEDFRDVEVGTVDGF 559 (649)
T ss_pred ecccchhhhhccchhhccccCCHHHHHHHHHHHHHHHHcCCChhHeEEeccchHHHHHHhhc--ccccCccceeeccccc
Confidence 99998776655544 399999999999999999999999999999999999999999932 2245578999999999
Q ss_pred CCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccC-CchHHHHHHHHHHHcCccc--ccccccC
Q 006652 560 QGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVS-SDGFLKRLIEYFEEHAEYL--SGSEYLN 636 (637)
Q Consensus 560 QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~-~~~~~~~l~~~~~~~~~~~--~~~~~~~ 636 (637)
||+|+|+||+|+||||+.+++||+.|.||||||+||||+++.+|||..++. .+.+++.|++|+.+++.+. +..+|..
T Consensus 560 QGrEkdvVIfsmVRSN~k~evGFL~e~RRLNVAiTRaRRh~~vIgds~tl~~~~~~l~k~~~f~~~~~~~~~p~~~~~~~ 639 (649)
T KOG1803|consen 560 QGREKDVVIFSLVRSNDKGEVGFLGETRRLNVAITRARRHFVVIGDSRTLKEGNEFLKKLVEFLEENKLVFGPSILEYFN 639 (649)
T ss_pred ccceeeEEEEEEEeecCcccccccCCcceeeEEEEeccceEEEEcCcHHHHhhHHHHHHHHHHhhhcceeccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999998 6666654
Q ss_pred C
Q 006652 637 E 637 (637)
Q Consensus 637 ~ 637 (637)
|
T Consensus 640 ~ 640 (649)
T KOG1803|consen 640 D 640 (649)
T ss_pred c
Confidence 3
No 2
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=2.2e-99 Score=837.63 Aligned_cols=586 Identities=42% Similarity=0.623 Sum_probs=497.6
Q ss_pred HHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecCCCCCCCCCCCCCCEEEEeeCCCCCCCC
Q 006652 28 LEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSP 107 (637)
Q Consensus 28 ~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~~~~~~~~~~~~ 107 (637)
+|+++|++.+.++++++|++++++.|+||.+|.+. +.++++|+++++|.+... .++.|.+||+|+|+..++ ..
T Consensus 1 ~e~~~e~~~~~~~~~~~s~~~~~~~g~~~~~l~~~-~~~~~~g~~~~~f~~~~~---~~~~~~~GD~v~i~~~~~---~~ 73 (637)
T TIGR00376 1 LEREAEISAMMNEIRRLSLKQRERRGRAILNLQGK-IRGGLLGFLLVRFGRRKA---IATEISVGDIVLVSRGNP---LQ 73 (637)
T ss_pred CchHHHHHHHHHHHHhcCHHHHHhcCceEeceEEE-EEeCCCCeEEEEEecCCC---CCCcCCCCCEEEEecCCC---CC
Confidence 48999999999999999999999999999999998 788999999999997542 467999999999997532 23
Q ss_pred ceEEEEEEEEeCCEEEEEecCCCCCCCCCCeEEEEecchhhHHHHHHHHHHHHhcccCCCCcCccccccCCCCCCccccc
Q 006652 108 ALGQGVVYRLKDSSITVAFDDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTVLKKD 187 (637)
Q Consensus 108 ~~~~g~v~~~~~~~i~v~~~~~~~~~~~~~~~l~~~~~~~t~~r~~~al~~~~~~~~~~~~~~l~~~l~~~~~p~~~~~~ 187 (637)
....|+|+++.++.|+|.++..++......+++++++|++||+||..||..+... ...++++|||...|.+....
T Consensus 74 ~~~~g~V~~v~~~~i~v~~~~~~~~~~~~~~~i~~~~~~~t~~rm~~aL~~l~~~-----~~~l~~~llg~~~p~~~~~~ 148 (637)
T TIGR00376 74 SDLTGVVTRVGKRFITVALEESVPQWSLKRVRIDLYANDVTFKRMKEALRALTEN-----HSRLLEFILGREAPSKASEI 148 (637)
T ss_pred CCcEEEEEEEcCcEEEEEECCCCCcccCceEEEEEecCccHHHHHHHHHHHHHhc-----hhhHHHHHhCCCCCCccccc
Confidence 4579999999999999999885443223459999999999999999999999763 23688999998888764444
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceE
Q 006652 188 IAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRL 267 (637)
Q Consensus 188 ~~~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~ 267 (637)
..+.++++.||++|+.||..++.+.++++|+||||||||+|+++++.++++.|.+||+|||||.|||++.++|.+.+.++
T Consensus 149 ~~~~~~~~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~v 228 (637)
T TIGR00376 149 HDFQFFDPNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKI 228 (637)
T ss_pred ccccccCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcE
Confidence 45566788999999999999998668999999999999999999999999999999999999999999999999989999
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhcc-CChHHHH-------HH---------------
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKT-KDKNTRR-------EI--------------- 324 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~--------------- 324 (637)
+|+|++.++.+.+..++++..+..++......+++++++++..+..+. +....++ .+
T Consensus 229 vRlg~~~r~~~~~~~~sl~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 308 (637)
T TIGR00376 229 VRLGHPARLLKSNKQHSLDYLIENHPKYQIVADIREKIDELIEERNKKLKPSPQKRRGLSDIKILRKALKKREARGIESL 308 (637)
T ss_pred EEeCCchhcchhHHhccHHHHHhcChhHHHHHHHHHHHHHHHHHHHhhccchHhHhhccchHHHHHHHHhhhhhcccchh
Confidence 999999999999999999999998888888888888887766653221 1111100 00
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHhC
Q 006652 325 -----------QKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKG 393 (637)
Q Consensus 325 -----------~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~ 393 (637)
...+..+.+...+.+.....+++..++++++|+ ++..+....||+||||||+|++||++|+|+.++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~a~v~~st~---~~~~l~~~~Fd~vIIDEAsQ~~ep~~lipl~~~ 385 (637)
T TIGR00376 309 KIASMAEWIETNKSIDRLLKLLPEIEERIENEILAESDVVQSTN---SSAGLKGWEFDVAVIDEASQAMEPSCLIPLLKA 385 (637)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhCCEEEecc---CcHhhccCCCCEEEEECccccchHHHHHHHhhC
Confidence 111222333344445567788999999887774 456677889999999999999999999999999
Q ss_pred CeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCcc--
Q 006652 394 SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR-- 471 (637)
Q Consensus 394 ~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~-- 471 (637)
+++||||||+||||++.+.. ..+++.|+|+||...++.. ..+|++||||||+|++|+|..||+|+|.+++.....
T Consensus 386 ~~~vLvGD~~QLpP~v~s~~--~~~l~~SlferL~~~~~~~-~~~L~~QYRMh~~I~~f~s~~fY~g~L~~~~~~~~~~l 462 (637)
T TIGR00376 386 RKLILAGDHKQLPPTILSHD--AEELELTLFERLIKEYPER-SRTLNVQYRMNQKIMEFPSREFYNGKLTAHESVANILL 462 (637)
T ss_pred CeEEEecChhhcCCcccccc--ccccchhHHHHHHHhCCCc-eeecchhcCCCHHHHhhhHHhhcCCccccCcchhhhhh
Confidence 99999999999999999865 3688999999999988776 789999999999999999999999999987642110
Q ss_pred -------------CCCCCCcEEEEEccCCccccc-ccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHH
Q 006652 472 -------------TSSTEPTLLLIDIAGCDMEEK-KDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVL 537 (637)
Q Consensus 472 -------------~~~~~~~~~~id~~~~~~~~~-~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~ 537 (637)
......|++|+|+.|.+..+. ...+.|++|..||..|+.++..|+..|+++.+|||||||++|+.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~p~~fidt~g~~~~e~~~~~~~S~~N~~EA~~V~~~v~~l~~~g~~~~~IgVItPY~aQv~~ 542 (637)
T TIGR00376 463 RDLPKVEATDSEDDLETEIPLLFIDTSGCELFELKEADSTSKYNPGEAELVSEIIQALVKMGVPANDIGVITPYDAQVDL 542 (637)
T ss_pred hhcccccccccccccCCCCCEEEEECCCccccccccCCCCCcCCHHHHHHHHHHHHHHHhcCCCcceEEEEcccHHHHHH
Confidence 012345899999999865332 233578999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccCCchHHHH
Q 006652 538 LKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKR 617 (637)
Q Consensus 538 l~~l~~~~~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~ 617 (637)
|++++.. ....++|+|||+|||+|+|+||+|+||+|..+.+||+.|.|||||||||||++|+||||..+|+++++|+.
T Consensus 543 L~~~l~~--~~~~i~v~TVd~fQG~E~DvIi~S~vrsn~~~~~gFl~d~rRLNVAlTRAK~~LiIvGn~~~l~~~~~~~~ 620 (637)
T TIGR00376 543 LRQLLEH--RHIDIEVSSVDGFQGREKEVIIISFVRSNRKGEVGFLKDLRRLNVALTRARRKLIVIGDSRTLSNHKFYKR 620 (637)
T ss_pred HHHHHHh--hCCCeEEccccccCCccccEEEEEEEecCCCCCcccccCcceeeeehhhhhCceEEEECHHHhccChHHHH
Confidence 9977632 23579999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccccc
Q 006652 618 LIEYFEEHAEYLSGSE 633 (637)
Q Consensus 618 l~~~~~~~~~~~~~~~ 633 (637)
|++|++++|+|+.|..
T Consensus 621 li~~~~~~~~~~~~~~ 636 (637)
T TIGR00376 621 LIEWCKQHGEVREAFK 636 (637)
T ss_pred HHHHHHHCCCEEcCCC
Confidence 9999999999988753
No 3
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=100.00 E-value=2e-90 Score=711.92 Aligned_cols=579 Identities=31% Similarity=0.430 Sum_probs=448.9
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecCCCCCCCCCCC
Q 006652 11 SAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFG 90 (637)
Q Consensus 11 ~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (637)
++.+..+|.+.|.||+.+|.+++.. .+...+-.+..+ .|..|+..+.+..|..+.. ..+-++.
T Consensus 235 ry~da~~y~~vf~pliklea~ydk~--------------~Kes~~q~~~tv-RW~~gLnkk~~a~f~~~k~--~~e~kl~ 297 (935)
T KOG1802|consen 235 RYEDAYEYQNVFSPLIKLEADYDKR--------------LKESQTQENGTV-RWDIGLNKKRLAYFTLPKL--DSELKLA 297 (935)
T ss_pred cccchHHHhhhcchhhhhhhhhhhh--------------hhhhcccccceE-EeeeccccceEEEEecCCC--cchhccc
Confidence 3567889999999999999887752 112222334433 5778999999999998874 1344788
Q ss_pred CCCEEEEeeCCCCCCCCceEEEEEEEEeCC---EEEEEe--cCCCCCCCCCCeEEEEecchhhHHHHHHHHHHHHhcccC
Q 006652 91 THDVVVLKPNKADLGSPALGQGVVYRLKDS---SITVAF--DDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQN 165 (637)
Q Consensus 91 ~gd~v~~~~~~~~~~~~~~~~g~v~~~~~~---~i~v~~--~~~~~~~~~~~~~l~~~~~~~t~~r~~~al~~~~~~~~~ 165 (637)
.||-..+..... ........|.|.++.++ ++.+.+ ...++...+..|.+++.++.++|.||..||..|..+. .
T Consensus 298 ~GdE~~L~y~~~-~~~~w~~~g~v~~~pd~~~dE~~lEl~~~~~~p~e~~~~Ftvd~vwk~ts~drm~~alk~la~D~-~ 375 (935)
T KOG1802|consen 298 IGDEIRLTYSGG-LVLPWNGIGSVLKIPDNNGDEVKLELEFSQDPPIEVTHGFTVDFVWKSTSFDRMQLALKLLAVDE-K 375 (935)
T ss_pred cCCeeEEEecCC-cCCcccccceEEecCCCCcceeEEEeecCCCCCcccccceEEEEEEcCccHHHHHHHHHHhhhcc-c
Confidence 999999987532 22223456888888653 555544 3333334556789999999999999999999987632 2
Q ss_pred CCCcCccccccCCCCCCc-cccc--cc-CCCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-C
Q 006652 166 GPAAGLIPVLFGEQKPTV-LKKD--IA-FKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-G 240 (637)
Q Consensus 166 ~~~~~l~~~l~~~~~p~~-~~~~--~~-~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~ 240 (637)
.....+...++|...+.. .+.. .. ..+-.++||.+|..||+++|. ++++|||||||||||.|.+++|.++++. +
T Consensus 376 ~vs~y~y~klLgh~~~~~~~k~~LP~~~s~~~lpkLN~SQ~~AV~~VL~-rplsLIQGPPGTGKTvtsa~IVyhl~~~~~ 454 (935)
T KOG1802|consen 376 KVSGYLYHKLLGHPVEDSSLKKLLPRRFSVPNLPKLNASQSNAVKHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLARQHA 454 (935)
T ss_pred cchhhhhhHHhcCcchhhhhcccCchhhcCCCchhhchHHHHHHHHHHc-CCceeeecCCCCCceehhHHHHHHHHHhcC
Confidence 222344455566522211 1110 11 123347899999999999998 8999999999999999999999999986 5
Q ss_pred CeEEEeccchHHHHHHHHHhcCCCceEEEeCCCCCcCh--hHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCCh
Q 006652 241 SKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLP--QVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDK 318 (637)
Q Consensus 241 ~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 318 (637)
.+||||||||.|||+|++++.+.|++++|+-..++-.. .+....+..++...+. .+++.+.+ .++.
T Consensus 455 ~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~--------pELq~l~k----lkde 522 (935)
T KOG1802|consen 455 GPVLVCAPSNIAVDQLAEKIHKTGLKVVRLCAKSREDIESDVSFLSLHEQLRNMDK--------PELQKLLK----LKDE 522 (935)
T ss_pred CceEEEcccchhHHHHHHHHHhcCceEeeeehhhhhhccCCccHHHHHHHHhccCc--------HHHHHHHh----hhhh
Confidence 79999999999999999999999999999987665322 2222233333332222 11111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHhC-CeEE
Q 006652 319 NTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKG-SRCI 397 (637)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~-~~~v 397 (637)
...-. ..-.+.+++..+...++++..|+||||||.+++.+.+...+|..|+||||.|++||++|+||..| +++|
T Consensus 523 ~gelS-----~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Agd~rl~~~kfr~VLiDEaTQatEpe~LiPlvlG~kq~V 597 (935)
T KOG1802|consen 523 GGELS-----SSDEKKYRKLKRAAEKELLNQADVICCTCVGAGDRRLSKFKFRTVLIDEATQATEPECLIPLVLGAKQLV 597 (935)
T ss_pred ccccc-----chhhHHHHHHHHHHHHHHHhhcCEEEEecccccchhhccccccEEEEecccccCCcchhhhhhhcceeEE
Confidence 00000 00011222333455678999999999999999999999999999999999999999999999987 8999
Q ss_pred EeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCcc------
Q 006652 398 LAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR------ 471 (637)
Q Consensus 398 lvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~------ 471 (637)
|||||+||.|++....++..|+.+||||||...+-. .++|.+||||||.|++|+|++||+|.|.++.....+
T Consensus 598 lVGDh~QLgpvi~~kK~a~Agl~qsLferli~lg~~--P~~L~vQYRmhP~lSefpsn~fY~G~LqnGVT~~~R~~~g~~ 675 (935)
T KOG1802|consen 598 LVGDHKQLGPVIMCKKAATAGLSQSLFERLISLGIK--PIRLQVQYRMHPALSEFPSNMFYEGELQNGVTEIERSPLGVD 675 (935)
T ss_pred EeccccccCceeeeHHHHHhHHHHHHHHHHHhccCC--ceEEEEeeeeChhhhhcchhhhccchhhcCcchhhhccCCCC
Confidence 999999999999999999999999999999987543 689999999999999999999999999988763222
Q ss_pred --CCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhccC----
Q 006652 472 --TSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKD---- 545 (637)
Q Consensus 472 --~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~---- 545 (637)
.+.+..|+.|+...|.+ +....+.|+.|..||..+..++..|++.|+.++.|||||||.+|...|-.++...
T Consensus 676 ~pwp~p~~pl~fy~~~g~e--eisasGtSf~Nr~Ea~~~ekii~~l~~~gv~~~qIGVITpYegQr~~i~~ym~~~gsl~ 753 (935)
T KOG1802|consen 676 FPWPQPDKPLFFYVCYGQE--EISASGTSFLNRTEAANCEKIITKLLKSGVKPSQIGVITPYEGQRSYIVNYMQTNGSLH 753 (935)
T ss_pred CCCCCCCCccceEEeccce--eeeccccceecHHHHHHHHHHHHHHHHcCCCHHHeeeecccchhHHHHHHHHHhcCccc
Confidence 23356788898888853 3344468999999999999999999999999999999999999999988654332
Q ss_pred -CCCCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccCCchHHHHHHHHHHH
Q 006652 546 -DKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEE 624 (637)
Q Consensus 546 -~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~l~~~~~~ 624 (637)
.-+..|+|.|||+|||+|+|+||+||||+|....|||+.|+||||||+||||++|+||||+..|+++++|..++.|+++
T Consensus 754 ~~ly~~veVasVDaFQGrEKdfIIlSCVRsn~~qgIGFl~d~RRlNVaLTRaK~glvivGN~~~L~k~~LW~~li~h~~e 833 (935)
T KOG1802|consen 754 KDLYKEVEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGLVIVGNPKVLRKHPLWGHLITHYKE 833 (935)
T ss_pred cchhheeEEEeeccccCcccceEEEEEeecccccccccccCchhhhhhhhhcccceEEecCHHHhhhchHHHHHHHHhhc
Confidence 1235679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccc
Q 006652 625 HAEYLS 630 (637)
Q Consensus 625 ~~~~~~ 630 (637)
+++++.
T Consensus 834 ke~l~e 839 (935)
T KOG1802|consen 834 KEVLVE 839 (935)
T ss_pred ccceee
Confidence 998865
No 4
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.2e-85 Score=700.04 Aligned_cols=559 Identities=29% Similarity=0.412 Sum_probs=450.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhccCCChhHHhhcCCeeecceEEe-ee-eccCCcEEEEEEecCCCCCCCCCC
Q 006652 15 LQEFVSVMAPLIDLEKEAEIS---ASITSGASRNLDTAQKKGSTILNLKCVD-AQ-TGLMGKTLLEFQSTKGDVLPAHKF 89 (637)
Q Consensus 15 ~~~y~~~~~~ll~~E~~~~~~---~~~~~~~~~~~~~~~~~g~~i~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (637)
-.+|+..|..++.+|.+.+-. .....+|..+..++++.|.|+.+|.+.. .. ....|.++..|..-....-+-..|
T Consensus 480 ~~~y~~~w~~~l~le~~~~~~~~~~~~~~~~~k~~~e~~~~g~~l~~L~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~ 559 (1100)
T KOG1805|consen 480 HLEYLAGWTLLLGLESKNEHNRLLSQNLDFWLKGIIEEEREGRCLSRLSVVSPEEHEETEGVYIYAFDCFLRAGNSVSLF 559 (1100)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccccceeeccHHHHhhcCcceeceeeccceeeEeecceeeehhhhhhccCCccccc
Confidence 458999999999999885542 2234589999999999999999999876 22 345777777776544333235689
Q ss_pred CCCCEEEEeeCCCCCCCCceEEEEEEEEeCCEEEEEecCCCCCCCC-CCeEEEEecchhhHHHHHHHHHHHHhcccCCCC
Q 006652 90 GTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFDDIPEEGLN-SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPA 168 (637)
Q Consensus 90 ~~gd~v~~~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~~~~~~~~-~~~~l~~~~~~~t~~r~~~al~~~~~~~~~~~~ 168 (637)
..||.|.|+...... -....+.+..+....+....+.....-+. ..|++++.....+..-+...|..+-.. ..+.
T Consensus 560 ~~gd~v~iS~e~~~~--i~~~~~~~~~~~~~~l~~~~~~~~~s~~~~el~ridK~d~~ss~s~~r~nL~~l~~~--~~~~ 635 (1100)
T KOG1805|consen 560 HAGDRVIISSEEGHG--IGLAMIKVVLINRLRLDRSTPKDEQSVLEEELFRIDKEDIMSSASTKRGNLMSLLLN--DEGG 635 (1100)
T ss_pred ccCceEEEecCccce--eEeeeeeeecchhhhccccCCcchhhccccceeeccHHhhhhhhhhhhhhHHHHhcC--Cccc
Confidence 999999999753211 12222333322222222222221111111 237777655555555555555554431 2334
Q ss_pred cCccccccCCCCCCccccc--ccCCC----CCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCe
Q 006652 169 AGLIPVLFGEQKPTVLKKD--IAFKP----FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK 242 (637)
Q Consensus 169 ~~l~~~l~~~~~p~~~~~~--~~~~~----~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ 242 (637)
..+++++....+|.+.... ..... ....||..|++|+..++.+.++.+|.|.|||||||||+.+|+.|+..|++
T Consensus 636 ~~lRdlivd~~pP~f~~~~~~~~~p~~~~~~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkk 715 (1100)
T KOG1805|consen 636 KILRDLIVDLKPPKFVDALSKVLIPKIKKIILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKK 715 (1100)
T ss_pred hhHHHHhhhcCCchhhcccccccCchhhHHHHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCe
Confidence 6788888888888875421 11111 33589999999999999999999999999999999999999999999999
Q ss_pred EEEeccchHHHHHHHHHhcCCCceEEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHH
Q 006652 243 ILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRR 322 (637)
Q Consensus 243 ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 322 (637)
||+++|||.|||||.-+|...++.++|+|.++++.+.+..+++.... +...
T Consensus 716 VLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~----s~ks------------------------- 766 (1100)
T KOG1805|consen 716 VLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNET----SEKS------------------------- 766 (1100)
T ss_pred EEEEehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhccccc----chhh-------------------------
Confidence 99999999999999999999999999999999999998887752100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHhCCeEEEeCCC
Q 006652 323 EIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDH 402 (637)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~~~~vlvGD~ 402 (637)
-......++...||.|||.+..++.+..++||++|||||+|+..|-+|.||..++++||||||
T Consensus 767 -----------------~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~lP~~LgPL~~s~kFVLVGDh 829 (1100)
T KOG1805|consen 767 -----------------YADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILLPLCLGPLSFSNKFVLVGDH 829 (1100)
T ss_pred -----------------HHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccccccccchhhhhhhhcceEEEeccc
Confidence 012345688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCc------------
Q 006652 403 LQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVK------------ 470 (637)
Q Consensus 403 ~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~------------ 470 (637)
.||||.|.|.+|+..|++.|||+||.+.+|.. +..|+.||||+.+|+.++|.+||+|+|+++...+.
T Consensus 830 ~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpea-V~~Lt~QYRMn~~I~~LSN~L~Yg~~L~Cgs~eVs~~~~~~~~~~~~ 908 (1100)
T KOG1805|consen 830 YQLPPLVRSSEARQEGLSESLFKRLSEKHPEA-VSSLTLQYRMNREIMRLSNKLIYGNRLKCGSKEVSRASELDRKGALS 908 (1100)
T ss_pred ccCCccccchhhhhcCcchHHHHHHhhhCchH-HHhHHHHHhhcchHHhhhhhheECCeeeecChhhhhhhccccchhhh
Confidence 99999999999999999999999999999887 77899999999999999999999999999877332
Q ss_pred -------------cCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHH
Q 006652 471 -------------RTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVL 537 (637)
Q Consensus 471 -------------~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~ 537 (637)
....+..+++|++++.+..-+.+.+.+...|..||..|.+++..++..|+++++|||||||++|+.+
T Consensus 909 ~~~~~s~s~~wl~~v~~p~~~v~f~~~D~~~~ie~~~e~~~i~N~~EA~li~~~~~~fv~sGv~~~dIGIis~YraQv~L 988 (1100)
T KOG1805|consen 909 VYMDDSSSDHWLQAVLEPTRDVCFVNTDTCSTIESQGEKGGITNHGEAKLISELVEDFVKSGVKPSDIGIISPYRAQVEL 988 (1100)
T ss_pred hhcccccchHHHHHhhcCCccceEEecCcccchhhhccccCcCchhHHHHHHHHHHHHHHcCCCHHHeeeeehHHHHHHH
Confidence 1224566788888887765565666677789999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCceeccCCCCCCccccEEEEEeeecCCCCccc-cCCCCCchhhhhhccccceEEEecCCccCCchHHH
Q 006652 538 LKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLK 616 (637)
Q Consensus 538 l~~l~~~~~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~g-fl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~ 616 (637)
|+++++. ..++|.|||+|||+++|+||+|+||+|.....| .|.|+||+||||||||++||+||+..+|.+.|.++
T Consensus 989 i~~~l~~----~~lEinTVD~yQGRDKd~IivSfvrsn~~~~~~eLLkD~rRlNVAlTRAK~KLIlvGs~s~l~~~~~~~ 1064 (1100)
T KOG1805|consen 989 IRKILSS----AVLEINTVDRYQGRDKDCIIVSFVRSNKKSKVGELLKDWRRLNVALTRAKKKLILVGSKSTLESYPPFR 1064 (1100)
T ss_pred HHhhccc----cceeeeehhhhcCCCCCEEEEEEEecCCcccHHHHHHhhHHHHHHHHhhhceEEEEecccccccCchHH
Confidence 9998754 239999999999999999999999999987666 88999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcc
Q 006652 617 RLIEYFEEHAEY 628 (637)
Q Consensus 617 ~l~~~~~~~~~~ 628 (637)
.|+++.+++.++
T Consensus 1065 ~l~~~l~~~~~l 1076 (1100)
T KOG1805|consen 1065 QLLKLLENRIEL 1076 (1100)
T ss_pred HHHhhhhhhhhH
Confidence 999999887665
No 5
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-53 Score=444.52 Aligned_cols=282 Identities=30% Similarity=0.374 Sum_probs=240.8
Q ss_pred HHHhhcCceeeeeccccccc--ccCCCCCCEEEEecCCCcchHHHHHHHHhC-CeEEEeCCCCCCCccccC-HHHHhcCc
Q 006652 344 TDVIKNADVVLTTLTGAVSR--KLDNTSFDLVIIDEAAQALEIACWIALLKG-SRCILAGDHLQLPPTVQS-VEAEKKGL 419 (637)
Q Consensus 344 ~~il~~~~vi~~T~~~~~~~--~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~-~~~vlvGD~~QL~p~v~s-~~~~~~g~ 419 (637)
..+++.++||.+|++++... .+..-...+|||.||+.+.|...+.++.+. .++||||||+||.|..-. ..+...++
T Consensus 693 a~llR~a~vigmTTTgaaryr~ilekv~pkivivEEAAEVlEahiIaal~p~~EhviLIGDHKQLrP~~~vy~L~q~fnL 772 (1025)
T KOG1807|consen 693 AFLLREADVIGMTTTGAARYRFILEKVQPKIVIVEEAAEVLEAHIIAALTPHTEHVILIGDHKQLRPFSGVYKLPQIFNL 772 (1025)
T ss_pred HHHhhccceeeeechhHHHHHHHHHHhCCcEEEEhhHhHHhhcchhhhhcccceeEEEecchhhcCCCcchhhHhHhcch
Confidence 45789999999999998743 356668899999999999999999988876 899999999999997543 23445789
Q ss_pred CCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCC--CCccCCCCCCcEEEEEccCCcccccccCCC
Q 006652 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS--GVKRTSSTEPTLLLIDIAGCDMEEKKDEED 497 (637)
Q Consensus 420 ~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~--~~~~~~~~~~~~~~id~~~~~~~~~~~~~~ 497 (637)
..|+||||.+..-+ ...|+.||||+|.|.++....||++ |.+.++ ..+...+....+.|+.+... ++..+ +.
T Consensus 773 ~iSlFERLVe~glp--fsrLn~QhRM~p~IsrllvpsiYdd-l~d~esvk~yedI~gms~nlfFv~hnsp--ee~~d-e~ 846 (1025)
T KOG1807|consen 773 SISLFERLVEAGLP--FSRLNLQHRMRPCISRLLVPSIYDD-LLDSESVKEYEDIRGMSKNLFFVQHNSP--EECMD-EM 846 (1025)
T ss_pred hHHHHHHHHHcCCC--hhhhhHHhhhchHHHHHhhHHHhhh-hhcchhhccccccccccceeeEEecCCc--ccCcc-hh
Confidence 99999999987443 5789999999999999999999996 555554 22344556677888876653 23333 38
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhccCCCCCCceeccCCCCCCccccEEEEEeeecCCC
Q 006652 498 STMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSK 577 (637)
Q Consensus 498 s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~ 577 (637)
|+.|..||.+++++++.|+.+++.++||.|+|+|++|..+|++++...-. ..|.|.|||+|||.|.|||++|+||||..
T Consensus 847 S~~NlhEa~mlv~l~kyli~q~y~psdIviLttY~gQk~ci~rllp~~~~-stv~VatVDsfQGeEndIVLlSLVRsn~~ 925 (1025)
T KOG1807|consen 847 SIGNLHEAGMLVKLTKYLIQQQYKPSDIVILTTYNGQKECIKRLLPQNYR-STVQVATVDSFQGEENDIVLLSLVRSNIS 925 (1025)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCccceEEEeechhHHHHHHHHhHHHhc-CcceEEEeccccCccccEEEEEEEeccCC
Confidence 99999999999999999999999999999999999999999987644222 56999999999999999999999999999
Q ss_pred CccccCCCCCchhhhhhccccceEEEecCCccCC-chHHHHHHHHHHHcCcccccc
Q 006652 578 KEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSS-DGFLKRLIEYFEEHAEYLSGS 632 (637)
Q Consensus 578 ~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~-~~~~~~l~~~~~~~~~~~~~~ 632 (637)
+.+|||...+|++||+||||++||||||...+.. .|.|.++++-+++++.+-.+.
T Consensus 926 griGFL~~anRvCVALSRAr~glyiiGN~q~la~~~pLWnkivntLrenn~Ig~~l 981 (1025)
T KOG1807|consen 926 GRIGFLRQANRVCVALSRARWGLYIIGNVQILADTPPLWNKIVNTLRENNAIGEAL 981 (1025)
T ss_pred ceeeeeeccchhhhhhhhhhcceEEecceeecccCchhHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999985 899999999999999876554
No 6
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-51 Score=474.95 Aligned_cols=607 Identities=34% Similarity=0.464 Sum_probs=421.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecCCCCCCCCCCCCCC
Q 006652 14 SLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHD 93 (637)
Q Consensus 14 ~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 93 (637)
.+..+......+...|...+.......++......+...+.++.++.........+...+..+..... ........|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 167 (767)
T COG1112 90 LIDSLSKKLGKLVEIEQEAEIKTKELEIKKLRLAKRSFKGRAILGLLAKVLGENLGSEALVKYGRLES--YINLEEFVGE 167 (767)
T ss_pred HHHHHHHHhccccHHHHHHhhhhhhhHhhhhcchhhhccchHhhhhhhhhhhhhhhhhHHHhcccccc--cCchhhhhhh
Confidence 35577777888889998888888888888887778888888887754432222222112222222111 1222334455
Q ss_pred EEEEeeCCCCCCCCceEEEEEEEEeCCEEEEEecCC-CCCCCCCCeEEEEecc------hhhHHHHHHHHHHHHhcccCC
Q 006652 94 VVVLKPNKADLGSPALGQGVVYRLKDSSITVAFDDI-PEEGLNSPLRLEKLAN------EVTYRRMKDALIQLSKGVQNG 166 (637)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~~-~~~~~~~~~~l~~~~~------~~t~~r~~~al~~~~~~~~~~ 166 (637)
.+.++..... .....+.+.........+..... +........+++...+ ...+.++...+..+.......
T Consensus 168 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (767)
T COG1112 168 LVLVSKLNKI---KSELAGLLIEYLKRLRKVLDKIIPPPLFEKEEVRVDIVENLLELSESILLRRELELLSKFALILKRL 244 (767)
T ss_pred hhhhccccch---hhcccccchhhhhhheeecccccCcccccccceEEEehhhccccchhHHHHhhhhhhHHHhhcccch
Confidence 5555443211 11111222221111111211111 1111223445555444 667777777666665421110
Q ss_pred CCcCccccccCCCCCCccc-ccccCCCCCCCCCHHHHHHHHHHHccCCeEEEE-cCCCCchHH--HHHHHHHHHHHc-CC
Q 006652 167 PAAGLIPVLFGEQKPTVLK-KDIAFKPFNSNLDHSQKDAISKALSSKNVFMLH-GPPGTGKTT--TVVEIILQEVKR-GS 241 (637)
Q Consensus 167 ~~~~l~~~l~~~~~p~~~~-~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~-GpPGTGKT~--ti~~~i~~l~~~-~~ 241 (637)
...+.....+...+.... ....+...+..++..|..++.......+..++. ||+|||||. ++.+.+...... +.
T Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (767)
T COG1112 245 -LESLFEILRGKDLPIKLLDVELELVEINKELDNEQKLAVKRLLSLNDLFLIHQGPFGTGKTRSVTILELIIELLENNKL 323 (767)
T ss_pred -hhhHHHHhhccccccccCCcceeeeccchhccchhHHHHHHHhcccceeEeecCCCCCCcchHHHHHHHHHHHHHhccc
Confidence 001111111211121111 122344566788999999998888766666666 999999999 777777777766 89
Q ss_pred eEEEeccchHHHHHHHHHhcCC--CceEEEeCCCCCcChhHHHhhHHHHHhcCCChh-hHHHHHHHHHHHHHHHhc----
Q 006652 242 KILACAASNIAVDNIVERLVPH--RVRLVRLGHPARLLPQVLESALDAQVLRGDNSS-LASDIRKEMKALNGKLLK---- 314 (637)
Q Consensus 242 ~ILv~a~tn~Avd~l~~rL~~~--~~~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~---- 314 (637)
+++.+++++.+++++..++.+. ....++++++..........++...+....... ........+..+......
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (767)
T COG1112 324 KILPTAESNAAVDNLLRRLKRTVIKVELLRIGHPSRVLKKLKLDTLEELLEKHEIPGNKIAALDKVIRELREEGERIIRE 403 (767)
T ss_pred ceEEecCcccchhhHHHHHHhhccccceEEcCCcchhhhhhhhhHHHHHHHhcccccchhHHHHHHHHHHhhhhhcccee
Confidence 9999999999999999999886 356889999998888877777776654443332 111111111111000000
Q ss_pred ------------------cC----ChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccc
Q 006652 315 ------------------TK----DKN--------TRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRK 364 (637)
Q Consensus 315 ------------------~~----~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~ 364 (637)
.. .-. .............+..+.........+...++++++|++.+....
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~ 483 (767)
T COG1112 404 IAKLRERLERKRLDKISHLNVALRGILPALNKSEALWISLEEKQKKILKELRRLKKKAVTKILEAADVVLSTLSIAGFSI 483 (767)
T ss_pred cHHHHhhhhhhHHHHHHHhhhhhcchhHHHHHHHHHHHhhhhhHHhHHHHHhHhHHHHHHHHHHhcCeEEEeccchhHHH
Confidence 00 000 000011111112222233344555667777889999999999888
Q ss_pred cCCCCCCEEEEecCCCcchHHHHHHHHhCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccC
Q 006652 365 LDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYR 444 (637)
Q Consensus 365 l~~~~fd~vIIDEA~q~~e~~~l~~l~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR 444 (637)
+....||+||||||+|++++.+++|+.+++++|++|||+||||++.+......++..++|+++...++ ....+|+.|||
T Consensus 484 ~~~~~fd~viiDEAsQ~~~~~~~~~l~~~~~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~~~~~~~-~~~~~L~~qyR 562 (767)
T COG1112 484 LKKYEFDYVIIDEASQATEPSALIALSRAKKVILVGDHKQLPPTVFFKESSPEGLSASLFERLIDNGP-EVVYLLRVQYR 562 (767)
T ss_pred hcccccCEEEEcchhcccchhHHHhHhhcCeEEEecCCccCCCeecchhhcccchhHhHHHHHHHhCC-chheeeeeecc
Confidence 77779999999999999999999999999999999999999999988755678899999999999887 34789999999
Q ss_pred CchhHHhhchhhccCCccccCCCCCccCC------C--CCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHH
Q 006652 445 MHEHIMNWSSKQLYNSKIKAHPSGVKRTS------S--TEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLI 516 (637)
Q Consensus 445 ~~~~I~~~~n~~fY~~~l~~~~~~~~~~~------~--~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~ 516 (637)
||+.|+.|+|..||+|++..+........ . ...++.++++.+... .....+..|..||..+..++..++
T Consensus 563 m~~~i~~f~s~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~n~~e~~~~~~~~~~~~ 639 (767)
T COG1112 563 MHPDIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPEVVISNPLEFYDTLGAEE---FFESKSKLNELEAEIVKVIVDELL 639 (767)
T ss_pred cChhhhhCchhhccCCccccCcchhhhhhhccccccccccCceEEEEecCccc---ccCccceecHHHHHHHHHHHHHHH
Confidence 99999999999999999998877322111 1 357899999988643 334578899999999999999999
Q ss_pred HcCCCCCeEEEEcccHHHHHHHHHHhccCCCCCCceeccCCCCCCccccEEEEEeeecCCC-CccccCCCCCchhhhhhc
Q 006652 517 QSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSK-KEVGFLSDRRRMNVAVTR 595 (637)
Q Consensus 517 ~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~-~~~gfl~d~~rlnVAlTR 595 (637)
..++.+.+|||||||++|+..+++.+.... .+++|+|||+|||+|+|+||+|+||++.. +.+||+.|.||||||+||
T Consensus 640 ~~~~~~~~igvis~y~~q~~~i~~~~~~~~--~~v~v~tvd~fQG~EkdvIi~S~v~s~~~~~~i~~l~d~rRLNVAlTR 717 (767)
T COG1112 640 KDGLEENDIGVISPYRAQVSLIRRLLNEAG--KGVEVGTVDGFQGREKDVIILSLVRSNDDKGEIGFLGDPRRLNVALTR 717 (767)
T ss_pred HcCCcHHHcceecccHHHHHHHHHHHHhcC--CceEEeeccccCCccCcEEEEEEEeecCCCccccccCchhhhhhhhhc
Confidence 999999999999999999999998764322 58999999999999999999999999988 799999999999999999
Q ss_pred cccceEEEecCCccCCchHHHHHHHHHHHcCcccccc
Q 006652 596 ARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 632 (637)
Q Consensus 596 Ak~~liivg~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 632 (637)
||++|+|+|+..++..++.|+.++.+++..+.+....
T Consensus 718 Ak~~livvg~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 754 (767)
T COG1112 718 AKRKLIVVGSSSTLESDPLYKRLINDLKRKGLLAELN 754 (767)
T ss_pred ccceEEEEcChhHhhhchhHHHHHHHHHhcCcEeecc
Confidence 9999999999999999999999999999999987643
No 7
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=100.00 E-value=7.3e-39 Score=363.13 Aligned_cols=285 Identities=32% Similarity=0.398 Sum_probs=240.8
Q ss_pred hhcCceeeeeccccccccc--CCCCCCEEEEecCCCcchHHHHHHHHh-C-CeEEEeCCCCCCCccccCHHHHhcCcCCc
Q 006652 347 IKNADVVLTTLTGAVSRKL--DNTSFDLVIIDEAAQALEIACWIALLK-G-SRCILAGDHLQLPPTVQSVEAEKKGLGRT 422 (637)
Q Consensus 347 l~~~~vi~~T~~~~~~~~l--~~~~fd~vIIDEA~q~~e~~~l~~l~~-~-~~~vlvGD~~QL~p~v~s~~~~~~g~~~s 422 (637)
.+++.+|++|+.+...... ....|+.++||||.|+.++..++||.. + .+.+++||+.|||++|.+..+...++..|
T Consensus 512 ~~~a~~i~~t~~~~~~~~~~~~~~p~~~vviDeaaq~~e~~s~~PL~l~g~~~~~lvgd~~qlP~~V~s~~~~~~k~~~s 591 (827)
T KOG1801|consen 512 REEAALIVPTTRGSRIVLTLYGGPPLDTVVIDEAAQKYEPSSLEPLQLAGYQHCILVGDLAQLPATVHSSPAGCFKYMTS 591 (827)
T ss_pred cccceeEeecccccceEeecccCCCceEEEEehhhhhcCccchhhhhhcCCceEEEecccccCChhhccchhccccchhh
Confidence 3488999999998776433 355899999999999999999999986 4 89999999999999999998889999999
Q ss_pred HHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCc-------cCCCCCCcEEEEEccCCcccccccC
Q 006652 423 LFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVK-------RTSSTEPTLLLIDIAGCDMEEKKDE 495 (637)
Q Consensus 423 lf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~-------~~~~~~~~~~~id~~~~~~~~~~~~ 495 (637)
+|+|+...... ...|++||||||+|+.|+|..||+++|.+.+.... .......++.|+++.-. .|...+
T Consensus 592 lf~rl~l~~~~--~~~L~vqyrmhp~Is~fP~~~fy~~~i~d~~~vs~~~~~~~~~~~~~~~~y~f~~v~~g--~e~~~~ 667 (827)
T KOG1801|consen 592 LFERLELAGHK--TLLLTVQYRMHPEISRFPSKEFYGGRLKDVNNVSESNTVKLWHSGETFGPYPFFNVHYG--KERAGG 667 (827)
T ss_pred HHHHHHHccCc--cceecceeecCCccccCccccccccccccCcccchhhccccCcCCCccCceEEEEeccc--ccccCC
Confidence 99999865433 45899999999999999999999999988776332 22345668899998733 233444
Q ss_pred CCCccCHHHHHHHHHHHHHHHHc----CCCCCeEEEEcccHHHHHHHHHHhcc-C----CCCCCceeccCCCCCCccccE
Q 006652 496 EDSTMNEGEAEVAMAHAKRLIQS----GVHASDIGIITPYAAQVVLLKILRSK-D----DKLKNMEVSTVDGFQGREKEA 566 (637)
Q Consensus 496 ~~s~~N~~Ea~~v~~~v~~l~~~----g~~~~~I~IItpy~~Q~~~l~~l~~~-~----~~~~~i~V~Tvd~~QG~E~dv 566 (637)
+.|..|..|+.++..++..+.+. +..+..+|||+||+.|+..+++.... . .....+.+.|||+|||.|.|+
T Consensus 668 ~~s~~n~~E~~~~~~~~~~l~~~~~~~~~~~~~vGvisPY~~q~~~l~~~~~~~~~~~~~~~~~i~v~tvD~fqg~e~di 747 (827)
T KOG1801|consen 668 GKSPVNNEEVRFVGAIYSRLYKVSQPQVSVPGSVGVISPYKNQVKALRERFPEAYSLLLANNVDLSVSTVDSFQGGERDI 747 (827)
T ss_pred CCCcccHHHHHHHHHHHHHHHhhccccCCCCcceeeECchHHHHHHHHHHHHHHhcchhcccceeEEEecccccCCCCce
Confidence 58899999999999999998764 23367899999999999988853211 1 112478999999999999999
Q ss_pred EEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccCCchH-HHHHHHHHHHcCccccccccc
Q 006652 567 IIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGF-LKRLIEYFEEHAEYLSGSEYL 635 (637)
Q Consensus 567 VIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~~ 635 (637)
+|+|+||++..+.+||+.+.+|+|||+||||..++++||..+|..+.. |..++.-.+..|++.++....
T Consensus 748 ii~s~vrs~~~g~igf~~~~~RlnvALtra~~~l~v~Gne~~L~~~~~~w~~li~da~~r~~~~~~~~~~ 817 (827)
T KOG1801|consen 748 IIISTVRSIDEGSIGFECNLRRLNVALTRARTCFWLVGNEITLAPSCSIWASLILDAKGRGCFMDRAADV 817 (827)
T ss_pred eEEEEEEecccCccchhhhHHHHHHhhcccccceEEecCccccccccchhhhhcchhccccccccccccc
Confidence 999999999999999999999999999999999999999999997776 999999999999998887643
No 8
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-40 Score=359.47 Aligned_cols=385 Identities=26% Similarity=0.271 Sum_probs=284.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH--HHcCCeEEEeccchHHHHHHHHHhcCCCceEEE-eC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE--VKRGSKILACAASNIAVDNIVERLVPHRVRLVR-LG 271 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l--~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vr-ig 271 (637)
....++|..++...- -....++.||||||||.++++.+.++ ......+++|+++|++.|....|+.. ..-+-+ .+
T Consensus 310 s~~~~~~~~~~~~~~-~~~~y~~~~p~~~g~~~n~~~a~~~v~~~~~~~~il~~~p~~a~~k~~~~rl~~-p~~~~~~~~ 387 (775)
T KOG1804|consen 310 SVAREEQALHLLLCR-LPEPYIVFGPPGTGKTENYREAIAIVSFTSPHFYILVCAPSNASGKQPAHRLHY-PLTFSTARG 387 (775)
T ss_pred hhhhhhhhhhhcccc-cccccccccCCCcCCccchHHHHHHHHhcchHHHhhcccccccccccccccccc-ccccccccc
Confidence 334455555521111 24578999999999999988777665 34568999999999999999998721 110000 00
Q ss_pred CCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 006652 272 HPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351 (637)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~ 351 (637)
.+.+..... .+ ....++ ..+.....+ ........
T Consensus 388 ~~~~~~~~~----~~-------------~~~~~v-----------------------~~~~~~~e~------~~~~~~~~ 421 (775)
T KOG1804|consen 388 EDVRAKSST----AW-------------YNNAEV-----------------------SEVVEKVEE------LRKVWPYR 421 (775)
T ss_pred ccccccchh----HH-------------hhhHHH-----------------------HHHHHHHHH------HhhccceE
Confidence 000000000 00 000000 000000000 01345677
Q ss_pred eeeeeccccc---ccccCCCCCCEEEEecCCCcchHHHHHHHHhC---CeEEEeCCCCCCCccccCHHHHhcCcCCcHHH
Q 006652 352 VVLTTLTGAV---SRKLDNTSFDLVIIDEAAQALEIACWIALLKG---SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFE 425 (637)
Q Consensus 352 vi~~T~~~~~---~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~---~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~ 425 (637)
++.+||++++ ...+.-.+|.++++|||++++||++++++..- .++||.|||+||+|++.|..+...|++.+||+
T Consensus 422 i~i~t~~sag~~~~~g~~v~~f~hil~DeAg~stEpe~lv~i~~~~~~~~vvLsgdh~Qlgpv~~s~~A~~~gl~rsLle 501 (775)
T KOG1804|consen 422 WGITTCTSAGCVTSYGFQVGHFRHILVDEAGVSTEPELLVPGKQFRQPFQVVLSGDHTQLGPVSKSARAEELGLDRSLLE 501 (775)
T ss_pred EEEeeccceeeeecccccccceeeeeecccccccCcccccccccccceeEEEEccCcccccccccchhhhhhcccHHHHH
Confidence 8889998776 33456679999999999999999999999643 48999999999999999999999999999999
Q ss_pred HHHHHc----------CCccccccccccCCchhHHhhchhhccCCccccCCCCC--ccCCCCCCcEEEEEccCCcccccc
Q 006652 426 RLADLY----------GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGV--KRTSSTEPTLLLIDIAGCDMEEKK 493 (637)
Q Consensus 426 rl~~~~----------~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~--~~~~~~~~~~~~id~~~~~~~~~~ 493 (637)
|+...- .....+.|-.|||+|+.|+...|++||.+.|....... .........++|.-+.|....+.
T Consensus 502 r~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~l~~~l~y~~eL~~~~~~~~v~~~~~w~~liif~g~~G~~~r~~- 580 (775)
T KOG1804|consen 502 RALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILCLENRLYYLGELTAEASEVDVRGLELWSGLILFYGAPGFTERAG- 580 (775)
T ss_pred HHHHHHhhccccCCCcccccchhhHHHHhhhhHhhhcccccccccceeeeccHHHHHHHHhcccceecccccccccccc-
Confidence 987431 12245679999999999999999999999998765521 11111223377887887654433
Q ss_pred cCCCCccCHHHHHHHHHHHHHHHHcC-CCCCeEEEEcccHHHHHHHHHHhccCCCCCCceeccCCCCCCccccEEEEEee
Q 006652 494 DEEDSTMNEGEAEVAMAHAKRLIQSG-VHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMV 572 (637)
Q Consensus 494 ~~~~s~~N~~Ea~~v~~~v~~l~~~g-~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~i~V~Tvd~~QG~E~dvVIis~v 572 (637)
...|++|..||..|..++..+.... ....||||||||++|+..|+.++.. .+..++.|++|..|||+|+.+||+|+|
T Consensus 581 -~s~S~~n~~Ea~~V~~~~k~l~~~~~~~~~DIgvitpy~aq~~~i~~~l~~-~~~~~~~vgsVe~fqGqE~~viiiStV 658 (775)
T KOG1804|consen 581 -NSPSWLNLEEAAVVVRMTKALPLGEVAQPQDIGVITPYTAQVSEIRKALRR-LGVPGVKVGSVEEFQGQEPWVILGSTV 658 (775)
T ss_pred -CChhhccHHHHHHHHHHHhccCCCCccccccceeeCcHHHHHHHHHHHhcc-cCCCCCcccceeeeccccceeeEeecc
Confidence 3489999999999998888876654 4566999999999999999987644 356899999999999999999999999
Q ss_pred ecCCCC------ccccCCCCCchhhhhhccccceEEEecCCccCCchHHHHHHHHHHHcCcccc
Q 006652 573 RSNSKK------EVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLS 630 (637)
Q Consensus 573 rs~~~~------~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~l~~~~~~~~~~~~ 630 (637)
||.... .-+|+.+++++|||+|||+..++++|+...+..++.|..++.++.++|.|..
T Consensus 659 rS~~~~~~~~~~~~~fls~pk~l~v~V~rp~~l~i~~~~~h~~~~~~~~~~~l~~~~~n~~y~~ 722 (775)
T KOG1804|consen 659 RSFALPLLDDRYFGLFLSRPKRLLVAVGRPRALLINLGNPHLLGGDPPWGLLLLLRVENGRYPG 722 (775)
T ss_pred cccCCCcccccccceeecCcccceeeccCccccccccCCcccccCCCChhhheeeeecCCcccC
Confidence 997631 2238999999999999999999999999999999999999999999998853
No 9
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=100.00 E-value=2.3e-36 Score=292.42 Aligned_cols=187 Identities=40% Similarity=0.625 Sum_probs=133.6
Q ss_pred cCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCcc-------CCCCCCcEEEEEccCCcccc
Q 006652 419 LGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR-------TSSTEPTLLLIDIAGCDMEE 491 (637)
Q Consensus 419 ~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~-------~~~~~~~~~~id~~~~~~~~ 491 (637)
++.|||+|+.... ....++|++||||||+|++|+|+.||+|+|.+.+..... ......++.|+|+.+.....
T Consensus 1 ~~~Slferl~~~~-~~~~~~L~~qyR~~~~I~~~~s~~fY~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~ 79 (200)
T PF13087_consen 1 LDRSLFERLIKNG-SVPVVMLTEQYRMHPEIADFSSRLFYNGKLVSGPSVKNRPAPLLKLLPSPQNPIVFIDVSGSESSS 79 (200)
T ss_dssp TTS-HHHHHHHCT-----EE--EE-SS-HHHHHHHHHHHSTT--EESS-TCCCS-T-----SSTTSSEEEEE----EEEE
T ss_pred CCccHHHHHHHcC-CCCceecccccCCCHHHHHHHHHHHhchhcccCcccccccccccccccCCCCceEEEecccccccc
Confidence 4689999999876 233789999999999999999999999999988762222 23356789999998864332
Q ss_pred cccCCCCccCHHHHHHHHHHHHHHHHcCCCC---CeEEEEcccHHHHHHHHHHhccCCCC---CCceeccCCCCCCcccc
Q 006652 492 KKDEEDSTMNEGEAEVAMAHAKRLIQSGVHA---SDIGIITPYAAQVVLLKILRSKDDKL---KNMEVSTVDGFQGREKE 565 (637)
Q Consensus 492 ~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~---~~I~IItpy~~Q~~~l~~l~~~~~~~---~~i~V~Tvd~~QG~E~d 565 (637)
... ..|++|..||+.|+.++..|...+... .+|||||||++|+.+|++.+...... ..+.|+|||+|||+|+|
T Consensus 80 ~~~-~~s~~N~~Ea~~i~~~~~~l~~~~~~~~~~~~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~~~v~Tvd~~QG~E~d 158 (200)
T PF13087_consen 80 ESS-QTSYYNPDEAEFIVELVRDLLDNGPDSNKPSSIGIITPYRAQVALIRKALRSRYPSSPIKDIKVSTVDSFQGQEAD 158 (200)
T ss_dssp TTC--SCEEEHHHHHHHHHHHHHHHHTT--G---GGEEEEES-HHHHHHHHHHHHHCSTCHHHHCSEEEEHHHHTT--EE
T ss_pred ccc-ccceechhhHHHHHHHHhhhhhccccccccCCceEEcCchHHHHHHHHHHhhhccccccceEEEecHHHhccccce
Confidence 211 278999999999999999999988665 89999999999999999766432221 13999999999999999
Q ss_pred EEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCC
Q 006652 566 AIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTE 607 (637)
Q Consensus 566 vVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~ 607 (637)
+||+|+|+++....+||+.+.+|+|||+||||++||||||.+
T Consensus 159 iVi~s~v~~~~~~~~~f~~~~~r~nVA~SRAk~~liiig~~~ 200 (200)
T PF13087_consen 159 IVIVSLVRTNSSSNIGFLNDPNRLNVALSRAKSGLIIIGNPE 200 (200)
T ss_dssp EEEEEE---STTS-SGGGC-HHHHHHHHTSEEEEEEEEE-H-
T ss_pred EEEEEeccCCccccccccCCcCeeeeeHHHHhcCEEEEecCC
Confidence 999999999987889999999999999999999999999863
No 10
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=100.00 E-value=2.6e-35 Score=292.43 Aligned_cols=215 Identities=39% Similarity=0.577 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH--------HHcCCeEEEeccchHHHHHHHHHhcC-----
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE--------VKRGSKILACAASNIAVDNIVERLVP----- 262 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l--------~~~~~~ILv~a~tn~Avd~l~~rL~~----- 262 (637)
+||++|++||..++....+++|+||||||||+|++.++..+ ...+.+||+||+||.|+|++.++|.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~~~~~ 80 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKLLDED 80 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhhcccc
Confidence 58999999999999855569999999999999999999999 45689999999999999999999998
Q ss_pred ---CCceEEEeCCCC-CcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Q 006652 263 ---HRVRLVRLGHPA-RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKR 338 (637)
Q Consensus 263 ---~~~~~vrig~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (637)
....++|+|++. ...+.+....+...+..... .....++++.+.+...+...........+........+.....
T Consensus 81 ~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (236)
T PF13086_consen 81 GKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFE-SKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKELEKI 159 (236)
T ss_dssp ---TT--EEE---GGTTS--TTGGGBHHHHHHTTT------------THHHCHHHHHHHHHHHCCSSCHHHHHHHHHHHH
T ss_pred ccccccchhhhccccccccccccccccccccccccc-ccchhhhHHHHHHHHhhhhhhhhhhhhhcchhccccccccccc
Confidence 357899999988 55666666666555433221 1112222222222221100000000000011122223333333
Q ss_pred HHHHHHHHhhcCceeeeecccccccccCCC--CCCEEEEecCCCcchHHHHHHHHhC-CeEEEeCCCCCCCccccC
Q 006652 339 QQLAVTDVIKNADVVLTTLTGAVSRKLDNT--SFDLVIIDEAAQALEIACWIALLKG-SRCILAGDHLQLPPTVQS 411 (637)
Q Consensus 339 ~~~~~~~il~~~~vi~~T~~~~~~~~l~~~--~fd~vIIDEA~q~~e~~~l~~l~~~-~~~vlvGD~~QL~p~v~s 411 (637)
.......++..++||++|+.++....+... .||+||||||+|++++++++||..+ +++||||||+||||++.|
T Consensus 160 ~~~~~~~~l~~~~vi~~T~~~~~~~~~~~~~~~~d~vIvDEAsq~~e~~~l~~l~~~~~~~vlvGD~~QLpP~v~s 235 (236)
T PF13086_consen 160 REELRRFILKEADVIFTTLSSAASPFLSNFKEKFDVVIVDEASQITEPEALIPLSRAPKRIVLVGDPKQLPPVVKS 235 (236)
T ss_dssp HHHHHHHHHHT-SEEEEETCGGG-CCGTT-----SEEEETTGGGS-HHHHHHHHTTTBSEEEEEE-TTS-----S-
T ss_pred ccchhhhhcccccccccccccchhhHhhhhcccCCEEEEeCCCCcchHHHHHHHHHhCCEEEEECChhhcCCeeCC
Confidence 444457889999999999999976666665 8999999999999999999999888 999999999999999876
No 11
>PRK11054 helD DNA helicase IV; Provisional
Probab=100.00 E-value=5.3e-34 Score=317.41 Aligned_cols=387 Identities=16% Similarity=0.209 Sum_probs=217.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-CceEEE
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-RVRLVR 269 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~~~~vr 269 (637)
..||++|++||.. ..+..+|.|+||||||+|+++++.+|+.. +.+||++|||+.|+++|.+||.+. +..-+.
T Consensus 195 ~~L~~~Q~~av~~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~ 271 (684)
T PRK11054 195 SPLNPSQARAVVN---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDIT 271 (684)
T ss_pred CCCCHHHHHHHhC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcE
Confidence 6799999999975 35678999999999999999999999864 479999999999999999999753 322233
Q ss_pred eCCCCCcChhHHHhhHHHH--Hh--cCCChhh----HHHHH---------------------------------------
Q 006652 270 LGHPARLLPQVLESALDAQ--VL--RGDNSSL----ASDIR--------------------------------------- 302 (637)
Q Consensus 270 ig~~~~~~~~~~~~~l~~~--~~--~~~~~~~----~~~~~--------------------------------------- 302 (637)
+++.+.+.-.++...-... +. ..+.... ...+.
T Consensus 272 v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~~~~~l~~~~~~~~~~~~~~~k~~~~wl~~~~~~~~~~~~~~~~~~~~~~ 351 (684)
T PRK11054 272 ARTFHALALHIIQQGSKKVPVISKLENDSKARHALLIAEWRKQCSEKKAQAKGWRQWLTEELQWDVPEGNFWDDEKLQRR 351 (684)
T ss_pred EEeHHHHHHHHHHHhhhcCCCcCccccchHHHHHHHHHHHHHHhhhcccchhhhhhcchHHhhhcccchhhhhhhhHHHH
Confidence 4443332222111100000 00 0000000 00000
Q ss_pred --HHHHHHHHHHhccC----------ChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCC
Q 006652 303 --KEMKALNGKLLKTK----------DKNTRREIQKEL---RTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDN 367 (637)
Q Consensus 303 --~~~~~~~~~l~~~~----------~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~ 367 (637)
..+..+...+.... ....+..+.+.+ ..+.+.|..... ....++..+++...+....... ..
T Consensus 352 l~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~iy~~Ye~~L~--~~~~iDf~Dml~~A~~lL~~~~-~~ 428 (684)
T PRK11054 352 LASRLERWVSLMRMHGGSQAEMIAQAPEEVRDLFQKRLKLMAPLLKAWKKALK--AENAVDFSGLIHQAVNYLEKGR-FI 428 (684)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHhhhh-hh
Confidence 00000000000000 000000001111 111111111100 0011222222211111111011 12
Q ss_pred CCCCEEEEecCCCcchHH--HHHHHHh---CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccc
Q 006652 368 TSFDLVIIDEAAQALEIA--CWIALLK---GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQ 442 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~--~l~~l~~---~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~q 442 (637)
.+|++|+|||+|+++..+ ++..+.. +.++++|||+.|..+.+ .|....++..+...++....+.|+++
T Consensus 429 ~~~~~IlVDE~QD~s~~q~~ll~~l~~~~~~~~l~~VGD~~QsIY~f-------rGa~~~~~~~f~~~f~~~~~~~L~~n 501 (684)
T PRK11054 429 SPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRF-------SGADLSLTTAFHERFGEGDRCHLDTT 501 (684)
T ss_pred hcccEEEEEccccCCHHHHHHHHHHhccCCCCeEEEEECCCcccccc-------CCCChHHHHHHHhhcCCCeEEEeCCC
Confidence 369999999999997764 4444542 36899999999966653 45556677777777766556789999
Q ss_pred cCCchhHHhhchhhccCCccccCCCCCcc-CCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCC
Q 006652 443 YRMHEHIMNWSSKQLYNSKIKAHPSGVKR-TSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVH 521 (637)
Q Consensus 443 YR~~~~I~~~~n~~fY~~~l~~~~~~~~~-~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~ 521 (637)
||++++|++++|.++-.+.-. ....... .....+.+..+. ..+.+.+++.+..+.. +
T Consensus 502 YRs~~~I~~~An~~i~~n~~~-~~k~l~s~~~g~~p~v~~~~------------------~~~~~~il~~l~~~~~---~ 559 (684)
T PRK11054 502 YRFNSRIGEVANRFIQQNPHQ-LKKPLNSLTKGDKKAVTLLP------------------EDQLEALLDKLSGYAK---P 559 (684)
T ss_pred CCCCHHHHHHHHHHHHhCccc-cCCcccccCCCCCceEEEeC------------------CHHHHHHHHHHHHhhc---C
Confidence 999999999999877443211 1111111 111222222221 0245555555555543 3
Q ss_pred CCeEEEEcccHHHHHH-HHHHhccCCCCCCceeccCCCCCCccccEEEEEeeecCCC----C---------------ccc
Q 006652 522 ASDIGIITPYAAQVVL-LKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSK----K---------------EVG 581 (637)
Q Consensus 522 ~~~I~IItpy~~Q~~~-l~~l~~~~~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~----~---------------~~g 581 (637)
..+|+||++|+.+... ++...... ...+|.+.|+|++||+|+|+||+..+..... . ..-
T Consensus 560 ~~~I~IL~R~~~~~~~~l~~~~~~~-~~~~i~~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~~~~~~~~~~ 638 (684)
T PRK11054 560 DERILLLARYHHLRPALLDKAATRW-PKLQIDFMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEALLPPPEDFP 638 (684)
T ss_pred CCcEEEEEechhhHHHHHHHHHhhc-ccCCeEEEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhcccccccccc
Confidence 5799999999988753 44332222 2247999999999999999999987643220 0 001
Q ss_pred cCCCCCchhhhhhccccceEEEecCCccCCchHHHHHH
Q 006652 582 FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLI 619 (637)
Q Consensus 582 fl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~l~ 619 (637)
...++|.+|||+||||+.|+|+.+.. ..+++...|.
T Consensus 639 ~~eERRLlYVAlTRAr~~l~i~~~~~--~~S~fv~el~ 674 (684)
T PRK11054 639 DAEERRLLYVALTRAKHRVWLLFNKG--NPSPFVEELK 674 (684)
T ss_pred cHHHHHHHHHHhhhhhcEEEEEEcCC--CCCHHHHHHh
Confidence 12357889999999999999998743 2344544443
No 12
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=100.00 E-value=3.9e-32 Score=309.35 Aligned_cols=311 Identities=16% Similarity=0.165 Sum_probs=179.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-C--ceE
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-R--VRL 267 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~--~~~ 267 (637)
..||++|++||.. ..+..+|.|+||||||+|++++|.+|+.. +.+||++||||+|+++|.+|+.+. + ..-
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~~~~ 84 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTSQGG 84 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccCCCC
Confidence 5799999999985 46789999999999999999999999973 489999999999999999999764 1 122
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcC-----CChhhHHHHHHHHHHH------------HHHHhccCC----hHHH----H
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRG-----DNSSLASDIRKEMKAL------------NGKLLKTKD----KNTR----R 322 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~------------~~~l~~~~~----~~~~----~ 322 (637)
+.+++.+++.-.++.......-... +......-+++-+..+ ...+...++ .... .
T Consensus 85 ~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~ 164 (721)
T PRK11773 85 MWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAQWYINGQKDEGLRPQHIQSYGD 164 (721)
T ss_pred CEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcCCCHHHHHhccC
Confidence 3455555444333332111100000 0000000011111000 000000000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-cccc---CCCCCCEEEEecCCCcchHH--HHHHHHh-CCe
Q 006652 323 EIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIA--CWIALLK-GSR 395 (637)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEA~q~~e~~--~l~~l~~-~~~ 395 (637)
.....+..+.+.|.+... ....++..+++..+..... .+.+ -..+|++|+|||+|++...+ ++..|.. +.+
T Consensus 165 ~~~~~~~~iy~~Y~~~~~--~~~~~DfdDll~~~~~lL~~~~~~~~~~~~~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~ 242 (721)
T PRK11773 165 PVEQTWLKIYQAYQEACD--RAGLVDFAELLLRAHELWLNKPHILQHYQERFTHILVDEFQDTNAIQYAWIRLLAGDTGK 242 (721)
T ss_pred hHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCEEEEEchhcCCHHHHHHHHHHhCCCCe
Confidence 001111122222222111 0112333333333332221 1111 13489999999999997664 4444443 478
Q ss_pred EEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCccCCCC
Q 006652 396 CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSST 475 (637)
Q Consensus 396 ~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~ 475 (637)
+++|||++|-.+.+ .|.+...|.++...++....+.|+.|||++++|++++|.++-++.-..... .......
T Consensus 243 l~vVGD~dQsIY~f-------RGA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~r~~k~-~~~~~~~ 314 (721)
T PRK11773 243 VMIVGDDDQSIYGW-------RGAQVENIQRFLNDFPGAETIRLEQNYRSTANILKAANALIANNNGRLGKE-LWTDGGD 314 (721)
T ss_pred EEEEecCccccccc-------CCCChHHHHHHHHhCCCCeEEECCcCCCCCHHHHHHHHHHHHhcccccCcc-cccCCCC
Confidence 99999999966654 455566778888888776678899999999999999999886543221111 0001111
Q ss_pred CCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccH
Q 006652 476 EPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYA 532 (637)
Q Consensus 476 ~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~ 532 (637)
+.++.++... ....||..|++.+..++..|.+++||+||++.+
T Consensus 315 g~~v~~~~~~--------------~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~ 357 (721)
T PRK11773 315 GEPISLYCAF--------------NELDEARFVVERIKTWQDNGGALSDCAILYRSN 357 (721)
T ss_pred CCeeEEEeCC--------------CHHHHHHHHHHHHHHHHHcCCCcccEEEEEecc
Confidence 1222222111 124689999999999998898999999997443
No 13
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=100.00 E-value=2.9e-32 Score=310.74 Aligned_cols=310 Identities=14% Similarity=0.151 Sum_probs=177.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-C--ceE
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-R--VRL 267 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~--~~~ 267 (637)
..||++|++||.. ..+.++|.|+||||||+|++++|.+|+.. +.+||++||||+|+++|.+|+.+. + ..-
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~~~~ 79 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTSARG 79 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcccccC
Confidence 4699999999975 35789999999999999999999999974 479999999999999999999765 1 223
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcC-----CChhhHHHHHHHHHH------------HHHHHhccC----ChHHHH----
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRG-----DNSSLASDIRKEMKA------------LNGKLLKTK----DKNTRR---- 322 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~------------~~~~l~~~~----~~~~~~---- 322 (637)
+.+++.+++...++.......-... +......-+++.+.. +...+...+ ......
T Consensus 80 ~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~ 159 (715)
T TIGR01075 80 MWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAMWYINNQKDEGLRPSHIQAFDN 159 (715)
T ss_pred cEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHCCCCHHHHHhccC
Confidence 4455555444333332111100000 000001111111110 000000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-cccc---CCCCCCEEEEecCCCcchHH--HHHHHHh-CCe
Q 006652 323 EIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIA--CWIALLK-GSR 395 (637)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEA~q~~e~~--~l~~l~~-~~~ 395 (637)
...+.+..+.+.|..... ....++..+++..+..... .+.+ -..+|++|+|||+|++...+ ++..|.. +.+
T Consensus 160 ~~~~~~~~iy~~Y~~~~~--~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~ 237 (715)
T TIGR01075 160 PVERTWIKIYQAYQEACD--RAGLVDFAELLLRAHELLRNKPHILQHYQERFTHILVDEFQDTNKIQYAWIRLLAGNTGN 237 (715)
T ss_pred hHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCEEEEEccccCCHHHHHHHHHHhCCCCe
Confidence 001111122222221111 0112222222222222111 1111 13489999999999997764 3444443 478
Q ss_pred EEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCccCCCC
Q 006652 396 CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSST 475 (637)
Q Consensus 396 ~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~ 475 (637)
+++|||++|-.+.+ .|.+...|.++...++....+.|+.|||++++|++++|.++-++.-..... .......
T Consensus 238 l~vVGD~~QsIY~f-------RGA~~~~i~~f~~~~~~~~~~~L~~NyRS~~~Il~~an~li~~~~~r~~~~-~~~~~~~ 309 (715)
T TIGR01075 238 VMIVGDDDQSIYGW-------RGAQVENIQKFLKDFPGAETIRLEQNYRSTANILAAANALIANNDERLGKN-LWTDGEV 309 (715)
T ss_pred EEEEeCCccccccc-------CCCCHHHHHHHHHhCCCCeEEECcccCCCCHHHHHHHHHHHHhcccccccc-ccCCCCC
Confidence 99999999966654 445556777777778766678999999999999999999886543221111 0001111
Q ss_pred CCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 006652 476 EPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPY 531 (637)
Q Consensus 476 ~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy 531 (637)
+.++.++... ....||..|++.+..++..|.+++||+||++.
T Consensus 310 g~~i~~~~~~--------------~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~ 351 (715)
T TIGR01075 310 GEPISLYSAF--------------NELDEARFVVSRIKTWQRNGGALDECAVLYRS 351 (715)
T ss_pred CCceEEEeCC--------------CHHHHHHHHHHHHHHHHHcCCCccCEEEEEec
Confidence 1223332211 12368999999999999888888999988643
No 14
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=100.00 E-value=7.8e-32 Score=303.06 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=147.8
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-C---ceE
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-R---VRL 267 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~---~~~ 267 (637)
.||++|++||.. ..+.++|.|+||||||+|++++|++|+.. +.+||++||||+|+++|.+|+.+. + ..-
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~~~~~ 78 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRKEARG 78 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcccccC
Confidence 599999999976 36889999999999999999999999963 479999999999999999999764 2 122
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcC-----CCh---hhHHHHHHH--------HHHHHHHHhccC----ChHHH-----H
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRG-----DNS---SLASDIRKE--------MKALNGKLLKTK----DKNTR-----R 322 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~-----~~~---~~~~~~~~~--------~~~~~~~l~~~~----~~~~~-----~ 322 (637)
+.+|+.+++.-.++.......-... +.. ..++.+..+ +..+...+...+ ..... .
T Consensus 79 v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 158 (672)
T PRK10919 79 LMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKG 158 (672)
T ss_pred cEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 4556555544333322111000000 000 011111000 000100010000 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-cccc---CCCCCCEEEEecCCCcchHH--HHHHHHh-CCe
Q 006652 323 EIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIA--CWIALLK-GSR 395 (637)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEA~q~~e~~--~l~~l~~-~~~ 395 (637)
.....+..+.+.|.+.. .....++..+++..+..... .+.+ -..+|++|+|||+||+...+ ++..|.. +.+
T Consensus 159 ~~~~~~~~~~~~Ye~~l--~~~~~lDf~Dll~~~~~ll~~~~~~~~~~~~~~~~ilVDE~QDtn~~Q~~ll~~l~~~~~~ 236 (672)
T PRK10919 159 ERDRIFAHCYGLYDAHL--KACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRAR 236 (672)
T ss_pred hhHHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCEEEEEchhcCCHHHHHHHHHHHcCCCE
Confidence 00011111112222111 11122333333322221111 1111 13479999999999997764 3444443 478
Q ss_pred EEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCC
Q 006652 396 CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460 (637)
Q Consensus 396 ~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~ 460 (637)
+++|||++|..+.+ .|.+...|.++...+++...+.|+.|||++++|++++|.++-++
T Consensus 237 l~~VGD~~QsIY~f-------rGA~~~~~~~f~~~~~~~~~~~L~~NyRs~~~I~~~an~li~~n 294 (672)
T PRK10919 237 FTVVGDDDQSIYSW-------RGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANN 294 (672)
T ss_pred EEEEcCCccccccc-------CCCChHHHHHHHHhCCCCcEEECCCCCCCcHHHHHHHHHHHhhC
Confidence 99999999966654 45566788888888887667889999999999999999988654
No 15
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=100.00 E-value=8.9e-32 Score=307.64 Aligned_cols=310 Identities=17% Similarity=0.226 Sum_probs=179.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-C--ceE
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-R--VRL 267 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~--~~~ 267 (637)
..||++|++||.. ..+..+|.|+||||||+|++++|.+|+.. +.+||++||||+|+.+|.+|+.+. + ..-
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~~~~ 79 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPVAED 79 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccccCC
Confidence 4699999999975 46889999999999999999999999974 479999999999999999999754 1 223
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcCCC------h---hhHHHHHH----------------HHHHHHHHHhccCChHH--
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRGDN------S---SLASDIRK----------------EMKALNGKLLKTKDKNT-- 320 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~~~------~---~~~~~~~~----------------~~~~~~~~l~~~~~~~~-- 320 (637)
+.+++.+++.-.++...... ..-..+ . .+++.+.+ .+...........+...
T Consensus 80 ~~i~TFHs~~~~iLr~~~~~-~g~~~~f~i~d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~ 158 (726)
T TIGR01073 80 IWISTFHSMCVRILRRDIDR-IGINRNFSIIDPTDQLSLMKTILKDKNLDPKKFEPRSILGTISNAKNELLPPEDFAKEA 158 (726)
T ss_pred cEEEcHHHHHHHHHHHHHHH-hCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHcCCCHHHHHHhh
Confidence 45566555544443322110 000000 0 01111111 11111100000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-cccc---CCCCCCEEEEecCCCcchHHH--HHHHHh-C
Q 006652 321 RREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIAC--WIALLK-G 393 (637)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEA~q~~e~~~--l~~l~~-~ 393 (637)
.....+.+..+.+.|.+... ....++..|++..+..... +..+ -..+|++|+|||+||+...+. +..|.. +
T Consensus 159 ~~~~~~~~~~iy~~Y~~~l~--~~~~lDfdDll~~~~~lL~~~~~v~~~~~~~~~~IlVDEfQDtn~~Q~~ll~~L~~~~ 236 (726)
T TIGR01073 159 TNYFEKVVAEVYQEYQKRLL--RNNALDFDDLIMTTINLFQRVPDVLEYYQRKFQYIHVDEYQDTNRAQYTLVRLLASRF 236 (726)
T ss_pred cchHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCEEEEEccccCCHHHHHHHHHHhCCC
Confidence 00001111222222222111 1122333333322222111 1111 124899999999999987753 444443 4
Q ss_pred CeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCccCC
Q 006652 394 SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTS 473 (637)
Q Consensus 394 ~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~ 473 (637)
.++++|||++|-.+.+ .|.+...|.++...++....+.|+.|||+++.|++++|.++-.+.-.. +.......
T Consensus 237 ~~l~vVGD~~QsIY~f-------RgA~~~~~~~f~~~~~~~~~i~L~~NyRS~~~Il~~an~li~~~~~r~-~~~l~~~~ 308 (726)
T TIGR01073 237 RNLCVVGDADQSIYGW-------RGADIQNILSFEKDYPNATTILLEQNYRSTKNILQAANEVIEHNSNRK-PKNLWTEN 308 (726)
T ss_pred CEEEEEeCCCcccccc-------CCCChHHHHHHHHhCCCCeEEECccCCCCCHHHHHHHHHHHHhccccc-ccccccCC
Confidence 7899999999966544 445556677777778776678899999999999999999886542211 11111111
Q ss_pred CCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcC-CCCCeEEEEcccH
Q 006652 474 STEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG-VHASDIGIITPYA 532 (637)
Q Consensus 474 ~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g-~~~~~I~IItpy~ 532 (637)
..+.++.++.... ...|+..|.+.+.+++..| ++++||+||++.+
T Consensus 309 ~~g~~v~~~~~~~--------------~~~Ea~~ia~~I~~l~~~~~~~~~diAVL~R~~ 354 (726)
T TIGR01073 309 SSGDKITYYEADT--------------ERDEAQFVAGEIDKLVKNGERKYGDFAILYRTN 354 (726)
T ss_pred CCCcceEEEeCCC--------------HHHHHHHHHHHHHHHHHcCCCCcCCEEEEEeCc
Confidence 1122333332111 2368999999999998877 6889999997543
No 16
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=99.96 E-value=7.4e-29 Score=282.13 Aligned_cols=307 Identities=15% Similarity=0.135 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-C---ceE
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-R---VRL 267 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~---~~~ 267 (637)
.||++|++||.. ..+.++|.|+||||||+|++.+|.+++.. +++||++||||.|+.++.+|+.+. + ..-
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~~~~ 77 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGEARG 77 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCccccCC
Confidence 489999999975 36789999999999999999999999963 479999999999999999999753 2 222
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcCCChh---------hHHHHHHH--------HHHHHHHHhccC----ChHHHHH---
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRGDNSS---------LASDIRKE--------MKALNGKLLKTK----DKNTRRE--- 323 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~--------~~~~~~~l~~~~----~~~~~~~--- 323 (637)
+.+++.+++.-.++...... ..-..... ++..+..+ +..+...+...+ .......
T Consensus 78 v~v~TfHs~a~~il~~~~~~-~g~~~~~~il~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~ 156 (664)
T TIGR01074 78 LTISTFHTLGLDIIKREYNA-LGYKSNFSLFDETDQLALLKELTEGLIKDDKDLLDKLISTISNWKNDLLTPEQALASAR 156 (664)
T ss_pred eEEEeHHHHHHHHHHHHHHH-hCCCCCCEEeCHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCCHHHHHHhcc
Confidence 45566555444433322110 00000000 11111000 000111110000 0000000
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-cccc---CCCCCCEEEEecCCCcchHH--HHHHHHh-CC
Q 006652 324 --IQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIA--CWIALLK-GS 394 (637)
Q Consensus 324 --~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEA~q~~e~~--~l~~l~~-~~ 394 (637)
-...+..+.+.|..... ....++..+++........ ...+ -..+|++|+|||+|+++..+ ++..|.. +.
T Consensus 157 ~~~~~~~~~i~~~Y~~~l~--~~~~ldf~Dll~~~~~~L~~~~~i~~~~~~~~~~ilVDEfQD~~~~Q~~ll~~L~~~~~ 234 (664)
T TIGR01074 157 GEREQTFAHCYALYQAHLR--AYNALDFDDLILLPTLLLQQNEEVRNRWQNKIRYLLVDEYQDTNTSQYELVKLLVGDRA 234 (664)
T ss_pred ChHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhhChHHHHHHHHhCCEEEEeehccCCHHHHHHHHHHhcCCC
Confidence 00111112222221110 0112222222222211111 1111 12478999999999997764 4445544 36
Q ss_pred eEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCccCCC
Q 006652 395 RCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS 474 (637)
Q Consensus 395 ~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~ 474 (637)
++++|||++|..+.+ .|.+...|.++...++....+.|..|||++++|++++|.++-.+.-..... ......
T Consensus 235 ~l~~vGD~~QsIY~f-------rga~~~~~~~~~~~~~~~~~~~L~~NyRs~~~Il~~~n~l~~~~~~~~~~~-~~~~~~ 306 (664)
T TIGR01074 235 RFTVVGDDDQSIYSW-------RGARPENLVLLKEDFPQLKVIKLEQNYRSTGRILKAANILIANNPHVFEKK-LFSELG 306 (664)
T ss_pred eEEEEcCCcccccCC-------CCCCHHHHHHHHHhCCCCeEEECCCCCCChHHHHHHHHHHHhcCccccccc-ccccCC
Confidence 899999999966654 334445666777777766567899999999999999998765432111000 000111
Q ss_pred CCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHH-HHcCCCCCeEEEEcc
Q 006652 475 TEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRL-IQSGVHASDIGIITP 530 (637)
Q Consensus 475 ~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l-~~~g~~~~~I~IItp 530 (637)
.+.++.++.... ...|++.|+..+... +..|++.+||+||++
T Consensus 307 ~g~~v~~~~~~~--------------~~~Ea~~ia~~I~~~~~~~~~~~~diAVL~R 349 (664)
T TIGR01074 307 YGEKIKVIECNN--------------EEHEAERIAGEIIAHKLVNKTQYKDYAILYR 349 (664)
T ss_pred CCCceEEEeCCC--------------HHHHHHHHHHHHHHHHHcCCCCcccEEEEEe
Confidence 112333332211 235777777666532 234677778887753
No 17
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=99.96 E-value=2.1e-29 Score=271.62 Aligned_cols=422 Identities=27% Similarity=0.357 Sum_probs=283.4
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEeccchHHHHHHHHHhcCCCce---EEEe
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERLVPHRVR---LVRL 270 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rL~~~~~~---~vri 270 (637)
..|+.|.+|+..-.. ++.+.+.||||||||.+++.++..+.++ ..+.++++.||.|...+.+++.+.+++ .+|+
T Consensus 738 ~ft~~qveai~sg~q-pgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d~rhLlrl 816 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQ-PGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVDERHLLRL 816 (1320)
T ss_pred ccCHHHHHHHHhcCC-CCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccchhhHHHh
Confidence 358999999998876 8999999999999999999999888764 689999999999999999999876432 2344
Q ss_pred CCCCCcChhHHHh--------------hHHHHHhc----------C----CC------hhhHHHHHHHHHHHH---HH--
Q 006652 271 GHPARLLPQVLES--------------ALDAQVLR----------G----DN------SSLASDIRKEMKALN---GK-- 311 (637)
Q Consensus 271 g~~~~~~~~~~~~--------------~l~~~~~~----------~----~~------~~~~~~~~~~~~~~~---~~-- 311 (637)
|+...-.....++ -+-..+.+ . +. ....+...+-+.++. .+
T Consensus 817 g~ge~eletd~dfsrygrvn~~l~~r~~ll~ev~rla~sl~~pgdv~ytcetagyf~~~~V~~~wee~l~~v~~~~~~~~ 896 (1320)
T KOG1806|consen 817 GHGEEELETDKDFSRYGRVNYVLSRRLELLREVERLAKSLQAPGDVDYTCETAGYFFLAYVKRRWEEYLAKVDKGCDKDS 896 (1320)
T ss_pred cccHHhhhcccchhheeeEeeeeccchHHHHHHHHhhhhhcCccccccccchhhhhhhhHHHhhhHHHHHHhccCCCchh
Confidence 4321100000000 00000000 0 00 000000000111111 00
Q ss_pred -------------Hh-----------ccCChHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhcCceeeeecc
Q 006652 312 -------------LL-----------KTKDKNTRREIQKELRTLSKEERKR---------QQLAVTDVIKNADVVLTTLT 358 (637)
Q Consensus 312 -------------l~-----------~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~il~~~~vi~~T~~ 358 (637)
+. +..+.......++.++...+.+.+. ......-+.+.+.+|.+||+
T Consensus 897 ~~~~~~~fpf~~~f~d~p~~vfeg~n~~~d~~~a~~cf~hl~~ifqqLee~rafellr~~~dr~~Yll~kqakiiamtct 976 (1320)
T KOG1806|consen 897 VDIVSNRFPFHSYFGDKPKPPFEGYNKENDMDYATGCFRHLEYIFQQLEEFRAFELLRSGEDRELYLLVKQAKIIAMTCT 976 (1320)
T ss_pred hhhHhhhCcchhhhhcCCCccccccchhhhhhhhhhhHHHHHHHHHHHHhcccccccccchhHhhccCcccceeeecccC
Confidence 00 0001111122233333332222211 11122234578999999999
Q ss_pred cccccc---c-CCCCCCEEEEecCCCcchHHHHHHHHhC---------CeEEEeCCCCCCCccccC-HHHHhcCcCCcHH
Q 006652 359 GAVSRK---L-DNTSFDLVIIDEAAQALEIACWIALLKG---------SRCILAGDHLQLPPTVQS-VEAEKKGLGRTLF 424 (637)
Q Consensus 359 ~~~~~~---l-~~~~fd~vIIDEA~q~~e~~~l~~l~~~---------~~~vlvGD~~QL~p~v~s-~~~~~~g~~~slf 424 (637)
.+..+. + ....||=+++.|++|+.|.+..+|++.. ++++++|||.|+||++.. ..+.....+.|+|
T Consensus 977 haalkr~el~~lgf~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdhhqlPPv~~n~afqkysnm~qslf 1056 (1320)
T KOG1806|consen 977 HAALRRGDLVKLGFKYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQLPPVVKNQAFQKYSNMEQSLF 1056 (1320)
T ss_pred ChhhChhhHhhhceeechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccccccCCcccchHHHHHhcchhhhh
Confidence 887442 2 2348899999999999999988888631 789999999999999955 4444566788999
Q ss_pred HHHHHHcCCccccccccccCCchhHHhhchhhccCC-ccccCCCCCc----cCCCCCCcEEEEEccCCccc-ccccCCCC
Q 006652 425 ERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS-KIKAHPSGVK----RTSSTEPTLLLIDIAGCDME-EKKDEEDS 498 (637)
Q Consensus 425 ~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~-~l~~~~~~~~----~~~~~~~~~~~id~~~~~~~-~~~~~~~s 498 (637)
.|+.... .+.+-|+.|+|--+.|+.+.+. -|.+ ....+.+..+ .+.....++.|+++....-. |......-
T Consensus 1057 ~r~vRl~--ip~i~lnaqgrar~sI~~Ly~w-ry~lLg~l~~v~~lp~f~~aNagf~~~~qlinv~Df~g~gEt~p~p~f 1133 (1320)
T KOG1806|consen 1057 TRLVRLG--VPIIDLNAQGRARASIASLYNW-RYPLLGNLPHVSPLPRFQYANAGFAYEFQFINVPDFKGSGETEPSPGF 1133 (1320)
T ss_pred hcceecc--cceecchhhhhHHHHHHHHHHh-hhcccccCcCCccchhhhccccCceeeEEEecchhhccccccCCCccc
Confidence 9998763 3378899999999999999974 4543 1222222221 23344567889988654322 22222244
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhccCCCC-----CCceeccCCCCCCccccEEEEEeee
Q 006652 499 TMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKL-----KNMEVSTVDGFQGREKEAIIISMVR 573 (637)
Q Consensus 499 ~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~~~-----~~i~V~Tvd~~QG~E~dvVIis~vr 573 (637)
+.|..||+.++.+...+..-|.+.+.|.|+|.|++|+.+++++++..... ..-.|.|||.|||+..|.||+|+|+
T Consensus 1134 yQnlgeaey~vAly~YMr~Lgypa~Kisilttyngq~~lirdii~rrc~~nPfig~pAkv~tvdk~qgqqndfiIlslv~ 1213 (1320)
T KOG1806|consen 1134 YQNLGEAEYAVALFQYMRLLGYPANKISILTTYNGQKSLIRDIINRRCSHNPFIGQPAKVTTVDKFQGQQNDFIILSLVR 1213 (1320)
T ss_pred ccCCchhhhHHHHHHHHHHhCCchhHeeEEEeecchHHHHHHHHHHhccCCCccCCcccCCccccccccccceEEeeehh
Confidence 55999999999999999999999999999999999999999876543222 3467999999999999999999998
Q ss_pred cCCCCccccCCCCCchhhhhhccccceEEEecCCccC----CchHHHHHHHHHHH
Q 006652 574 SNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVS----SDGFLKRLIEYFEE 624 (637)
Q Consensus 574 s~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~----~~~~~~~l~~~~~~ 624 (637)
+. .+|.+.|.||+.||++||+.++++.|...... --|.|+.|.+.=..
T Consensus 1214 tr---~~gh~rdvrrlvva~srarlglyv~~r~~lf~~c~eLtp~~~~l~k~p~~ 1265 (1320)
T KOG1806|consen 1214 TR---EVGHLRDVRRLVVAMSRARLGLYVLCRRSLFRSCRELTPAFNELEKRPDK 1265 (1320)
T ss_pred hh---hhhhhccHHHHHHHHHHhhccchhHHHHHHHHHHHhccHHHHHHhhCcch
Confidence 75 46789999999999999999999999876554 35677766554333
No 18
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.95 E-value=1.2e-27 Score=262.25 Aligned_cols=63 Identities=38% Similarity=0.487 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC-----CeEEEeccchHHHHHHHHHhcC
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-----SKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-----~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
+.|+.|+..++. +++++|.||||||||||+..++..+.+.. .+|+++|||++|+..|.+.+..
T Consensus 148 ~~Qk~A~~~al~-~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALK-SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhh-CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 689999999998 78999999999999999999998886532 4799999999999999998743
No 19
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.95 E-value=5.5e-27 Score=264.40 Aligned_cols=294 Identities=23% Similarity=0.301 Sum_probs=180.9
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcCCCceEEEeC
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig 271 (637)
...||+.|++|+..++. +++++|+|+|||||||++..++..+...+ .+|++||||+.|++.|.+.+ |
T Consensus 321 ~~~l~~~Q~~Ai~~~~~-~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~----------g 389 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ-HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT----------G 389 (720)
T ss_pred CCCCCHHHHHHHHHHHh-CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc----------C
Confidence 46799999999999986 77999999999999999999888877777 89999999999999887763 3
Q ss_pred CCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 006652 272 HPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351 (637)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~ 351 (637)
.++...+.++... ....
T Consensus 390 ~~a~Tih~lL~~~--------~~~~------------------------------------------------------- 406 (720)
T TIGR01448 390 LTASTIHRLLGYG--------PDTF------------------------------------------------------- 406 (720)
T ss_pred CccccHHHHhhcc--------CCcc-------------------------------------------------------
Confidence 3333222221100 0000
Q ss_pred eeeeecccccccccCCCCCCEEEEecCCCcchHHHH---HHHHhCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHH
Q 006652 352 VVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACW---IALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLA 428 (637)
Q Consensus 352 vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l---~~l~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~ 428 (637)
.....-.....|+|||||||++...... ..+..+.++|||||++||||+-.+ ..|..+.
T Consensus 407 --------~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilvGD~~QLpsV~~G----------~v~~dl~ 468 (720)
T TIGR01448 407 --------RHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALPDHARLLLVGDTDQLPSVGPG----------QVLKDLI 468 (720)
T ss_pred --------chhhhhccccCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEECccccccCCCCC----------chHHHHH
Confidence 0000000135799999999988655322 222235899999999999998533 2455555
Q ss_pred HHcCCccccccccccCCc--hhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHH
Q 006652 429 DLYGDEVTSMLTVQYRMH--EHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAE 506 (637)
Q Consensus 429 ~~~~~~~~~~L~~qYR~~--~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~ 506 (637)
... ...++.|+.+||.. ..|..+++.. -.|.+.... .+.+.+.. .+..+ ....
T Consensus 469 ~~~-~~~~~~L~~i~RQ~~~s~i~~~a~~i-~~g~~~~~~-----------~~~~~~~~-----------~~~~~-~~~~ 523 (720)
T TIGR01448 469 LSQ-AIPVTRLTKVYRQAAGSPIITLAHGI-LHGEAPAWG-----------DFKFLNLT-----------RSEPE-GAAR 523 (720)
T ss_pred hcC-CCCEEEeCeeeccCCCcHHHHHHHHH-HcCCCchhh-----------hhhccccc-----------cccch-hhHH
Confidence 432 22367899999986 4688887654 233321000 00000000 00011 1112
Q ss_pred HHHHHHHHHHH----cCCCCCeEEEEcccHHH---H----HHHHHHhcc--------------------------C----
Q 006652 507 VAMAHAKRLIQ----SGVHASDIGIITPYAAQ---V----VLLKILRSK--------------------------D---- 545 (637)
Q Consensus 507 ~v~~~v~~l~~----~g~~~~~I~IItpy~~Q---~----~~l~~l~~~--------------------------~---- 545 (637)
.+..++..++. .+++..++-||||.+.- + ..+++.++. +
T Consensus 524 ~i~~~v~~~~~~~~~~~~~~~d~qVL~p~~~g~~Gv~~lN~~lq~~lnp~~~~~~~~~~~~~~~~~GDkVm~~~N~~~~~ 603 (720)
T TIGR01448 524 HIPLMVEKIVGMARVGGIPGADIQVLAPMYKGPLGIDALNQHLQALLNPYQKGQGGIEIAEGEYRKGDRVMQTKNDYNNE 603 (720)
T ss_pred HHHHHHHHHHHHHHhcCCChhHeeEeCccccCccCHHHHHHHHHHHhCccCCCCceeecCCceecCCCEEEEeeecchhc
Confidence 22333333322 23455566777765321 1 112222110 0
Q ss_pred -------------C--------------------------CCCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCC
Q 006652 546 -------------D--------------------------KLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDR 586 (637)
Q Consensus 546 -------------~--------------------------~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~ 586 (637)
. .+..-...|||++||+|+|.||+.+..+.. .+.++
T Consensus 604 v~NGdiG~I~~i~~~~~~~~~~i~v~f~g~~v~~~~~~~~~l~lAYAiTvHKsQGSe~~~Vii~l~~~~~-----~~l~r 678 (720)
T TIGR01448 604 IFNGDLGMIVKIEGAKQGKKDQVVVDFDGNEVELTRAELFNLTLAYATSIHKSQGSEFPTVILPIHTAHM-----RMLYR 678 (720)
T ss_pred cccCCeeEEEeccccccCCCceEEEEECCeEEEEcHHHhhhhhhhheeeehhccCccCCEEEEECCcccc-----hhhhh
Confidence 0 001112569999999999999998755432 46778
Q ss_pred CchhhhhhccccceEEEecCCcc
Q 006652 587 RRMNVAVTRARRQCCLVCDTETV 609 (637)
Q Consensus 587 ~rlnVAlTRAk~~liivg~~~~l 609 (637)
+.+|||+||||+.|+|+|+.+.+
T Consensus 679 ~llYTAiTRAk~~l~lvg~~~a~ 701 (720)
T TIGR01448 679 NLLYTALTRAKKRVILVGSAEAF 701 (720)
T ss_pred chheeeeeeeceEEEEEECHHHH
Confidence 99999999999999999997665
No 20
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.95 E-value=5e-27 Score=257.45 Aligned_cols=64 Identities=31% Similarity=0.382 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhc
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
..+.|+.|+..++. +++++|.||||||||||+..++..+.+. +.+|+++|||++|+..|.+++.
T Consensus 153 ~~d~Qk~Av~~a~~-~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 153 EVDWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCHHHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 45899999999997 7899999999999999999999988663 3589999999999999999874
No 21
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.2e-25 Score=255.53 Aligned_cols=316 Identities=21% Similarity=0.254 Sum_probs=187.1
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC----CeEEEeccchHHHHHHHHHhcCCCce----E
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG----SKILACAASNIAVDNIVERLVPHRVR----L 267 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~----~~ILv~a~tn~Avd~l~~rL~~~~~~----~ 267 (637)
.||++|++||.. ..+..+|.++||||||+|++++|.+++..+ .+||++||||+|+.+|.+|+.+.... .
T Consensus 2 ~Ln~~Q~~av~~---~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~~~~ 78 (655)
T COG0210 2 KLNPEQREAVLH---PDGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPAAEG 78 (655)
T ss_pred CCCHHHHHHHhc---CCCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCcccccC
Confidence 699999999987 368999999999999999999999999863 68999999999999999999876221 1
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcCCChhh--HHHHHHHHHHH------------------------HHHHhccCChH--
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRGDNSSL--ASDIRKEMKAL------------------------NGKLLKTKDKN-- 319 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~------------------------~~~l~~~~~~~-- 319 (637)
+.++..+.+...++.......... ..... ..+....+..+ ...+.......
T Consensus 79 ~~v~TfHs~~~~~lr~~~~~~~~~-~~~~i~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~ 157 (655)
T COG0210 79 LTVGTFHSFALRILRRHGERLGLN-ANFTILDSDDQLALIKELLRRELNLDDKELLPREALRYISEAKNALLSPLEASAL 157 (655)
T ss_pred cEEeeHHHHHHHHHHHHHHhcCCC-CCCEEecHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHhhCCChhhhhhh
Confidence 233433333222222111111000 00000 00111111111 11000000000
Q ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccccc-c-c--CCCCCCEEEEecCCCcchHH--HHHH
Q 006652 320 -TR---REIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSR-K-L--DNTSFDLVIIDEAAQALEIA--CWIA 389 (637)
Q Consensus 320 -~~---~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~-~-l--~~~~fd~vIIDEA~q~~e~~--~l~~ 389 (637)
.. ....+.+..+...|.+... ....++..+.+..++...... . . ...+|++|+|||+||....+ ++..
T Consensus 158 ~~~~~~~~~~~~~~~~y~~Y~~~~~--~~~~~df~dll~~~~~l~~~~~~v~~~~~~rf~~iLvDE~QDtn~~Q~~ll~~ 235 (655)
T COG0210 158 LLAAIKSEAEKKLAELYEEYQELLR--LNNALDFDDLLLLALRLLEENPEVLEALQARFRYILVDEFQDTNPLQYELLKL 235 (655)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhcCHHHHHHHHhhCCEEEEeCcCCCCHHHHHHHHH
Confidence 00 0001112222222222211 112233333333332222111 1 1 13589999999999996653 4444
Q ss_pred HHhC-CeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCC
Q 006652 390 LLKG-SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSG 468 (637)
Q Consensus 390 l~~~-~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~ 468 (637)
|... ..+++|||++|-.+.+ .|.....+.++...+|....+.|..|||+.+.|+.++|.++-++.-.....
T Consensus 236 la~~~~~l~~VGD~dQsIY~f-------rGA~~~ni~~f~~df~~~~~i~Le~NyRSt~~Il~~An~~i~~n~~r~~k~- 307 (655)
T COG0210 236 LAGNAANLFVVGDDDQSIYGF-------RGADPENILDFEKDFPAAKVIKLEQNYRSTPNILAAANKVIANNKKRQAKT- 307 (655)
T ss_pred HhCCCCCEEEEcCCcccccee-------CCCChHHHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHHHhcCCccCCCc-
Confidence 4443 6888999999966654 566778888999999876688999999999999999999887432222221
Q ss_pred CccC-CCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcC-CCCCeEEEEcccHHHHHHHH
Q 006652 469 VKRT-SSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG-VHASDIGIITPYAAQVVLLK 539 (637)
Q Consensus 469 ~~~~-~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g-~~~~~I~IItpy~~Q~~~l~ 539 (637)
.... ......+.++ .......||..+...+..+...| ...++++|+...+.|...+.
T Consensus 308 l~~~~~~~~~~~~~~--------------~~~~~~~ea~~i~~~I~~l~~~~~~~~~d~aiL~R~n~~s~~~e 366 (655)
T COG0210 308 LRTEVEGSGEKVVLL--------------LANDEEDEARWIASEIDALIEIGKVNYSDIAILYRTNAQSRLIE 366 (655)
T ss_pred ceeccCCCCCCceEE--------------eCCChHHHHHHHHHHHHHHHHcCCCChhhEEEEEecCcchHHHH
Confidence 1111 1112222222 12234579999999999999988 88999999988777666554
No 22
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=99.93 E-value=4.9e-25 Score=262.71 Aligned_cols=85 Identities=15% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCCCEEEEecCCCcchHH--HHHHHHhC----CeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCC-----ccc
Q 006652 368 TSFDLVIIDEAAQALEIA--CWIALLKG----SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGD-----EVT 436 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~--~l~~l~~~----~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~-----~~~ 436 (637)
.+|++|+|||+||+...+ ++..|..+ .++++|||++|..+.+ .|.+.++|.++...++. ...
T Consensus 387 ~rf~~ILVDEfQDTn~lQ~~Il~~L~~~~~~~~nLf~VGD~KQSIY~F-------RGAdp~lf~~~~~~f~~~~~~~~~~ 459 (1232)
T TIGR02785 387 EKFKEVLVDEYQDTNLLQESILQLLKRGEEDEGNLFMVGDVKQSIYRF-------RQADPSLFLEKYHRFAQEGNEHGKR 459 (1232)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHhccCCCCCeEEEEcCCcchhhhh-------cCCChHHHHHHHHHhhhhccCCceE
Confidence 489999999999997764 33344432 5899999999966654 55667888777665543 235
Q ss_pred cccccccCCchhHHhhchhhccC
Q 006652 437 SMLTVQYRMHEHIMNWSSKQLYN 459 (637)
Q Consensus 437 ~~L~~qYR~~~~I~~~~n~~fY~ 459 (637)
+.|..||||+++|++++|.+|..
T Consensus 460 i~L~~NfRS~~~Il~~~N~lF~~ 482 (1232)
T TIGR02785 460 IDLAENFRSRKEVLDTTNYLFKQ 482 (1232)
T ss_pred EECCcCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999853
No 23
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.93 E-value=1.1e-24 Score=246.65 Aligned_cols=169 Identities=22% Similarity=0.252 Sum_probs=116.6
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCC
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHP 273 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~ 273 (637)
...||++|++||..++.+.++++|+|+|||||||++..++..+...|.+|++||||+.|+..|.+. .|.+
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~----------~g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE----------SGIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc----------cCCc
Confidence 357999999999999876689999999999999999998888777899999999999999999865 2322
Q ss_pred CCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcee
Q 006652 274 ARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVV 353 (637)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi 353 (637)
+.....+.. . + .
T Consensus 420 a~Ti~~~~~----~-~----------------------------------------------------------~----- 431 (744)
T TIGR02768 420 SRTLASLEY----A-W----------------------------------------------------------A----- 431 (744)
T ss_pred eeeHHHHHh----h-h----------------------------------------------------------c-----
Confidence 221111000 0 0 0
Q ss_pred eeecccccccccCCCCCCEEEEecCCCcchHHH--HHH-HH-hCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHH
Q 006652 354 LTTLTGAVSRKLDNTSFDLVIIDEAAQALEIAC--WIA-LL-KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLAD 429 (637)
Q Consensus 354 ~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~--l~~-l~-~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~ 429 (637)
.........++||||||+++..... ++. .. .+.++|||||++||||+-.+. .|..+..
T Consensus 432 --------~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliLVGD~~QLpsVgaG~----------~f~~l~~ 493 (744)
T TIGR02768 432 --------NGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAGA----------AFRAIAE 493 (744)
T ss_pred --------cCcccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECChHHccccccCc----------HHHHHHH
Confidence 0000113669999999998754432 222 11 358999999999999986442 5666665
Q ss_pred HcCCccccccccccCCchhHHhhchhhccCCc
Q 006652 430 LYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSK 461 (637)
Q Consensus 430 ~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~ 461 (637)
..+ ...|+..||....-..-+...+-.|.
T Consensus 494 ~~~---~~~Lt~I~RQ~~~~~~~aa~~i~~G~ 522 (744)
T TIGR02768 494 RIG---YAELETIRRQREAWARQASLELARGD 522 (744)
T ss_pred hhC---eEEeeeEEecCCHHHHHHHHHHHcCC
Confidence 433 56899999986543333334444443
No 24
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=9e-24 Score=249.24 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=98.9
Q ss_pred CCCCEEEEecCCCcchHH--HHHHHHhC-C--eEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccc
Q 006652 368 TSFDLVIIDEAAQALEIA--CWIALLKG-S--RCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQ 442 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~--~l~~l~~~-~--~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~q 442 (637)
.+|++|+|||+||+...+ ++..|..+ . .+++||||+|..+.+ .|.+...|.++...++. .+.|++|
T Consensus 295 ~ry~~vLVDEFQDTd~~Q~~il~~L~~~~~~~~L~~VGDpKQSIY~F-------RGAD~~~~~~~~~~~~~--~~~L~~N 365 (1087)
T TIGR00609 295 EQYPIALIDEFQDTDPQQYRIFSKLFIAQKTTSLFLIGDPKQAIYSF-------RGADIFTYLQAKSKADA--RYTLGTN 365 (1087)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHHhCCCCCeEEEEECCccccccC-------CCCCHHHHHHHHHhcCc--EEECCCC
Confidence 489999999999997664 45555543 2 799999999977765 34445566666655552 6789999
Q ss_pred cCCchhHHhhchhhccCCcccc--CCC--CCc-----------cCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHH
Q 006652 443 YRMHEHIMNWSSKQLYNSKIKA--HPS--GVK-----------RTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEV 507 (637)
Q Consensus 443 YR~~~~I~~~~n~~fY~~~l~~--~~~--~~~-----------~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~ 507 (637)
||+++.|++++|.+|-...-.. ... ... .......++.++...... . +...+-..+|+.
T Consensus 366 yRS~~~Iv~~~N~lf~~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~--~~~~~~~~~a~~ 439 (1087)
T TIGR00609 366 WRSTPALVGSLNKLFSLISNPFLEKPIFIPVLAHQKNSKGSFVINGQEQPPIHFFTTEVES----E--GVDDYRQTIAQK 439 (1087)
T ss_pred CCCcHHHHHHHHHHHhccccccccCCCCCcccchhhcCCCccccCCCCCCCeEEeecCCcc----c--ccchHHHHHHHH
Confidence 9999999999999985421110 000 000 001122344454432210 0 011122345666
Q ss_pred HHHHHHHHHHc---------------CCCCCeEEEEcccHHHHHHHHH
Q 006652 508 AMAHAKRLIQS---------------GVHASDIGIITPYAAQVVLLKI 540 (637)
Q Consensus 508 v~~~v~~l~~~---------------g~~~~~I~IItpy~~Q~~~l~~ 540 (637)
+...+.+++.. +++++||+|+++.+.|...+++
T Consensus 440 ~a~~I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAVLvRs~~~a~~i~~ 487 (1087)
T TIGR00609 440 CAREIALWLASAALGLANFIATFGGRPLRAGDIAVLVRGRKEANQIRK 487 (1087)
T ss_pred HHHHHHHHHHhccccccccccccCcCCCCcccEEEEEeCCchHHHHHH
Confidence 77767666642 4678899999998887766654
No 25
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.91 E-value=3.3e-23 Score=237.04 Aligned_cols=168 Identities=23% Similarity=0.279 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPA 274 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~ 274 (637)
..||++|+.||..+...+++.+|+|+|||||||++..++..+-..|.+|+.+|||++|+..|.+. .|.++
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~----------~Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKE----------AGIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHh----------hCCCe
Confidence 47999999999988766789999999999999999998888878899999999999999999765 23333
Q ss_pred CcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceee
Q 006652 275 RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVL 354 (637)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~ 354 (637)
+....++ +.. ..
T Consensus 450 ~TIas~l---l~~------------------------------------------------------------~~----- 461 (1102)
T PRK13826 450 RTLSSWE---LRW------------------------------------------------------------NQ----- 461 (1102)
T ss_pred eeHHHHH---hhh------------------------------------------------------------cc-----
Confidence 2211110 000 00
Q ss_pred eecccccccccCCCCCCEEEEecCCCcchHHHHHHH--H--hCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHH
Q 006652 355 TTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIAL--L--KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 430 (637)
Q Consensus 355 ~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l--~--~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~ 430 (637)
... .-..-++||||||+++....+...+ . .+.++|||||++||||+-.+. .|..+.+.
T Consensus 462 ------~~~--~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG~----------~f~~l~~~ 523 (1102)
T PRK13826 462 ------GRD--QLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGA----------AFRAIADR 523 (1102)
T ss_pred ------Ccc--CCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECCHHHcCCCCCCc----------HHHHHHhh
Confidence 000 0113479999999988555433222 2 358999999999999985433 56666654
Q ss_pred cCCccccccccccCCchhHHhhchhhccCCc
Q 006652 431 YGDEVTSMLTVQYRMHEHIMNWSSKQLYNSK 461 (637)
Q Consensus 431 ~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~ 461 (637)
.+ +..|+..||...+-..-++..+-.|+
T Consensus 524 i~---~a~LteI~RQ~~~~~r~Aa~~i~~G~ 551 (1102)
T PRK13826 524 IG---YAELETIYRQREQWMRDASLDLARGN 551 (1102)
T ss_pred cC---EEEeeeeeecCChHHHHHHHHHHcCC
Confidence 33 57899999987653333444555554
No 26
>PRK13909 putative recombination protein RecB; Provisional
Probab=99.91 E-value=2.6e-23 Score=242.02 Aligned_cols=151 Identities=16% Similarity=0.249 Sum_probs=102.0
Q ss_pred CCCCCEEEEecCCCcchHH--HHHHHHh----------CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCc
Q 006652 367 NTSFDLVIIDEAAQALEIA--CWIALLK----------GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDE 434 (637)
Q Consensus 367 ~~~fd~vIIDEA~q~~e~~--~l~~l~~----------~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~ 434 (637)
..+|++|+|||+||+...+ ++.+|.. ...+++|||++|-.+.+ .|....+|.++...++.
T Consensus 326 ~~~~~~ilVDEfQDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQSIY~F-------RGA~~~~f~~~~~~~~~- 397 (910)
T PRK13909 326 DSKISHILIDEFQDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQSIYRF-------RGGKKELFDKVSKDFKQ- 397 (910)
T ss_pred hcCCCEEEEECccCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchhhhhhh-------cCCChHHHHHHHHHhhh-
Confidence 4589999999999997764 5556642 24799999999965544 45566788888877665
Q ss_pred cccccccccCCchhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHH
Q 006652 435 VTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKR 514 (637)
Q Consensus 435 ~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~ 514 (637)
....|++||||+++|++++|.+|-... ................+.++... .....+++.|++.+..
T Consensus 398 ~~~~L~~NyRS~~~Iv~~~N~~f~~~~-~~~~~~~~~~~~~~g~v~i~~~~-------------~~~~~~a~~ia~~I~~ 463 (910)
T PRK13909 398 KVDNLDTNYRSAPLIVDFVNEVFKKKY-KNYKTQYAEQHKSGGYVEVVEVA-------------DESEELLEQLLQEIQF 463 (910)
T ss_pred hhcccccCCCCChHHHHHHHHHHHHHH-HhhhhhhcccccCCCcEEEEECC-------------CccHHHHHHHHHHHHH
Confidence 367899999999999999999885421 11000000000111222222110 0123468889999999
Q ss_pred HHHcCCCCCeEEEEcccHHHHHHHH
Q 006652 515 LIQSGVHASDIGIITPYAAQVVLLK 539 (637)
Q Consensus 515 l~~~g~~~~~I~IItpy~~Q~~~l~ 539 (637)
++..|++++||+||++.+.|...+.
T Consensus 464 l~~~g~~~~dIaILvR~~~~~~~l~ 488 (910)
T PRK13909 464 LLEKGIDPDDIAILCWTNDDALEIK 488 (910)
T ss_pred HHHcCCCcCCEEEEEecCccHHHHH
Confidence 9999999999999998876654443
No 27
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.91 E-value=5.1e-23 Score=234.72 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPA 274 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~ 274 (637)
..||++|++||..++.+.++++|+|+|||||||++..++..+-..|.+|++||||+.|+..|.+. .|..+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~----------tGi~a 414 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGG----------SGIAS 414 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhc----------cCcch
Confidence 46999999999999987789999999999999998776666666799999999999999998753 12222
Q ss_pred CcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceee
Q 006652 275 RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVL 354 (637)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~ 354 (637)
+....+. .. + .
T Consensus 415 ~TI~sll----~~-~----------------------------------------------------------~------ 425 (988)
T PRK13889 415 RTIASLE----HG-W----------------------------------------------------------G------ 425 (988)
T ss_pred hhHHHHH----hh-h----------------------------------------------------------c------
Confidence 1111100 00 0 0
Q ss_pred eecccccccccCCCCCCEEEEecCCCcchHHHHHHH----HhCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHH
Q 006652 355 TTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIAL----LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 430 (637)
Q Consensus 355 ~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l----~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~ 430 (637)
.........++||||||+++....+...+ ..+.++|||||++||||+-.+ ..|..+...
T Consensus 426 -------~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLVGD~~QLpsV~aG----------~~f~~L~~~ 488 (988)
T PRK13889 426 -------QGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAG----------AAFRSIHER 488 (988)
T ss_pred -------ccccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEECCHHHcCCCCCC----------chHHHHHHh
Confidence 00000125589999999987554433222 135899999999999998432 356666655
Q ss_pred cCCccccccccccCCchhHHhhchhhccCCcc
Q 006652 431 YGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKI 462 (637)
Q Consensus 431 ~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l 462 (637)
.+ ...|+..+|...+...-+...+..|+.
T Consensus 489 ~~---~a~LteI~RQ~~~~~r~aa~~i~~G~~ 517 (988)
T PRK13889 489 HG---GAEIGEVRRQREDWQRDATRDLATGRT 517 (988)
T ss_pred cC---eEEeceeecCCCHHHHHHHHHHHcCCc
Confidence 44 467999999976654444455666543
No 28
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.8e-23 Score=244.24 Aligned_cols=167 Identities=18% Similarity=0.215 Sum_probs=104.7
Q ss_pred CCCCEEEEecCCCcchH--HHHHHHHhC-----CeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccc
Q 006652 368 TSFDLVIIDEAAQALEI--ACWIALLKG-----SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLT 440 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~--~~l~~l~~~-----~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~ 440 (637)
.+|++|+|||+||.... ..+..+..+ ..+++||||+|..+.+ .|.+...|............+.|.
T Consensus 377 ~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~~~~~lF~VGD~KQSIY~F-------RgAD~~~f~~a~~~~~~~~~~~L~ 449 (1139)
T COG1074 377 EQYPHILIDEFQDTDPQQWRILSRLFAGFKAGNRTLFLVGDPKQSIYRF-------RGADIFTFLEAASSEKAFARITLE 449 (1139)
T ss_pred hcCCeEEeeccccCCHHHHHHHHHHHhcCCCCCCceEEecCchHHhhhh-------cCCChHHHHHHhhccccCceeecc
Confidence 58999999999998655 455556544 4899999999966654 566677777766532233478999
Q ss_pred cccCCchhHHhhchhhccCCc------cccCCC---CCc---c---CCCCCCcEEEEEccCCcccccccCCCCccCHHHH
Q 006652 441 VQYRMHEHIMNWSSKQLYNSK------IKAHPS---GVK---R---TSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEA 505 (637)
Q Consensus 441 ~qYR~~~~I~~~~n~~fY~~~------l~~~~~---~~~---~---~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea 505 (637)
+|||+.++++++.|.+|-.-. ....+. ... . .....+...+++.......+............||
T Consensus 450 ~N~RS~~~vl~avN~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~a 529 (1139)
T COG1074 450 TNYRSTPELLNAVNALFKQAMFAYPGEIDYDPVAELGARNGSPGSVNGEPLPALKFWEEEDDWTAPENEEDEREIADLEA 529 (1139)
T ss_pred cccCCcHHHHHHHHHHHhhhhhhcCCCCCCchhhhhhcccCCCCCCCcccchhhhhhcCcccccCCCCchhHHHHHHHHH
Confidence 999999999999999986321 111110 000 0 0001111122221110000001001134466788
Q ss_pred HHHHHHHHHHHH--------cCCCCCeEEEEcccHHHHHHHHHH
Q 006652 506 EVAMAHAKRLIQ--------SGVHASDIGIITPYAAQVVLLKIL 541 (637)
Q Consensus 506 ~~v~~~v~~l~~--------~g~~~~~I~IItpy~~Q~~~l~~l 541 (637)
..|...+..+.. +.+.++||+|+++-+.+...|++.
T Consensus 530 ~~Ia~~L~~~~~~~~~~~~~r~i~~~DIaILVR~~~ea~~i~~a 573 (1139)
T COG1074 530 RQIAAWLRELIEGEAVLDGERPIRAGDIAVLVRSRNEAAAIERA 573 (1139)
T ss_pred HHHHHHHHHHhhCCccccCCCCCChhheEEEeecchhHHHHHHH
Confidence 888888888885 458899999999999888777643
No 29
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=99.89 E-value=2e-21 Score=232.18 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=97.7
Q ss_pred CCCCEEEEecCCCcchH--HHHHHHHh------------CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCC
Q 006652 368 TSFDLVIIDEAAQALEI--ACWIALLK------------GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGD 433 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~--~~l~~l~~------------~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~ 433 (637)
.+|++|+|||+||+... .++.+|.. ...+++|||++|-.+.+ .|.+..+|.++...++.
T Consensus 390 ~r~~~iLVDEFQDTs~~Q~~il~~L~~~~~~g~~~~~~~~~~lf~VGD~kQSIY~F-------RGAd~~~f~~~~~~~~~ 462 (1141)
T TIGR02784 390 RGIDHILVDEAQDTSPEQWDIIQALAEEFFSGEGARSGVERTIFAVGDEKQSIYSF-------QGADPDRFAEERREFNR 462 (1141)
T ss_pred cCCCEEEEECCcCCCHHHHHHHHHHHHhhcccccccCCCCCeEEEEeCCcccCccc-------cCCCHHHHHHHHHHHHH
Confidence 58999999999999766 45566653 25799999999977765 45566777776554421
Q ss_pred --------ccccccccccCCchhHHhhchhhccCCccccCCC------CCcc-CCCCCCcEEEEEccCCcccccc-----
Q 006652 434 --------EVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPS------GVKR-TSSTEPTLLLIDIAGCDMEEKK----- 493 (637)
Q Consensus 434 --------~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~------~~~~-~~~~~~~~~~id~~~~~~~~~~----- 493 (637)
...+.|++|||+++.|+++.|.+|-+........ .... .......+.++.....+..+..
T Consensus 463 ~~~~~~~~~~~~~L~~NyRS~~~Il~~~N~lf~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~l~~~~~~~~~~~~~~~~~ 542 (1141)
T TIGR02784 463 KVRAVGAKFEDLSLNYSFRSTPDVLAAVDLVFADPENYRGLSADSDLVVHEAIRSDLPGEVELWDLISPEEGEDPEDWTA 542 (1141)
T ss_pred hhhhccCCceEeeCCcCCCChHHHHHHHHHHHhCchhccccCCcchhhcccccccCCCCceEEEeccCcccccccccccc
Confidence 2356899999999999999999996532111100 0000 0011122333322111100000
Q ss_pred -cCC--CCccCHHHHHHHHHHHHHHHHcC----------CCCCeEEEEcccHH
Q 006652 494 -DEE--DSTMNEGEAEVAMAHAKRLIQSG----------VHASDIGIITPYAA 533 (637)
Q Consensus 494 -~~~--~s~~N~~Ea~~v~~~v~~l~~~g----------~~~~~I~IItpy~~ 533 (637)
... .......||+.|.+.+..++..| +.++||+|+++.+.
T Consensus 543 ~~~~~~~~~~~~~eA~~Ia~~I~~ll~~g~~~~~~~~r~~~~~DIAILvRs~~ 595 (1141)
T TIGR02784 543 PVDELGERAPEVRLAERIAATIRDWLDRGTPIPKGRGRAARPGDILVLVRKRD 595 (1141)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhCCCccccCCcCCCCCCcEEEEEeCCc
Confidence 000 01112258999999999998876 46789999986654
No 30
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=99.89 E-value=5.8e-22 Score=234.22 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=96.5
Q ss_pred CCCCEEEEecCCCcchHH--HHHHHHh---CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccc
Q 006652 368 TSFDLVIIDEAAQALEIA--CWIALLK---GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQ 442 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~--~l~~l~~---~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~q 442 (637)
.+|++|+|||+||+...+ ++..|.. ...+++||||+|..+.+.+ .+...|-...... ...+.|++|
T Consensus 376 ~~y~~ilIDEfQDT~~~Q~~il~~L~~~~~~~~l~~VGDpkQsIY~FRG-------Ad~~~~l~~~~~~--~~~~~L~~N 446 (1181)
T PRK10876 376 TRYPVAMIDEFQDTDPQQYRIFRRIYRHQPETALLLIGDPKQAIYAFRG-------ADIFTYMKARSEV--SAHYTLDTN 446 (1181)
T ss_pred hCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEeCCccccccCCC-------CCchHHHHHHhcc--CCeeECCCC
Confidence 599999999999997664 4555553 2579999999997766533 3333333322222 225689999
Q ss_pred cCCchhHHhhchhhccCCccc---cCCC--CCc--------cC---CCCCCcEEEEEccCCcccccccCCCCccCHHHHH
Q 006652 443 YRMHEHIMNWSSKQLYNSKIK---AHPS--GVK--------RT---SSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAE 506 (637)
Q Consensus 443 YR~~~~I~~~~n~~fY~~~l~---~~~~--~~~--------~~---~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~ 506 (637)
|||+++|++++|.+|....-. .... .+. .. ....+++.++-..+.. .........||+
T Consensus 447 yRS~~~Iv~~~N~lf~~~~~~~~~~~i~~~~v~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~eA~ 520 (1181)
T PRK10876 447 WRSAPGMVNSVNKLFSQTDDPFLFREIPFIPVKAAGKNQALRFVVKGETQPAMKFWLMEGEG------VGVGDYQQTMAQ 520 (1181)
T ss_pred cCcCHHHHHHHHHHHhcccccccCCCCCccccccccccccccccccCCCCCceeeeecCCCc------cCcchHHHHHHH
Confidence 999999999999998653210 0000 000 00 0111223332222110 011123456788
Q ss_pred HHHHHHHHHHHcC---------------CCCCeEEEEcccHHHHHHHHH
Q 006652 507 VAMAHAKRLIQSG---------------VHASDIGIITPYAAQVVLLKI 540 (637)
Q Consensus 507 ~v~~~v~~l~~~g---------------~~~~~I~IItpy~~Q~~~l~~ 540 (637)
.|...+.+++..| ++++||+|+++.+.|...+++
T Consensus 521 ~iA~~I~~ll~~g~~~~~~~~~~~~~r~~~~~DIAVLvRs~~~a~~i~~ 569 (1181)
T PRK10876 521 QCAAQIRDWLQAGQRGEALLMNGDDSRPVRASDITVLVRSRQEAALIRD 569 (1181)
T ss_pred HHHHHHHHHHhcccccceeeccCCCcCCCCcccEEEEEecCchHHHHHH
Confidence 8988888887543 567899999998887766653
No 31
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.88 E-value=3.9e-21 Score=199.59 Aligned_cols=204 Identities=19% Similarity=0.122 Sum_probs=138.3
Q ss_pred CCCCEEEEecCCCcchHH--HHHHHHhCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcC--Ccccccccccc
Q 006652 368 TSFDLVIIDEAAQALEIA--CWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG--DEVTSMLTVQY 443 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~--~l~~l~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~--~~~~~~L~~qY 443 (637)
..+.++||||||+....+ .+-.+..+..+.++||-.|-...-. -..+.++|....+. +...+-|..+|
T Consensus 527 ~~~kh~vIDeaqdys~~q~~~~r~l~~~as~tivgd~gq~i~~~~--------~e~~~~e~~~~~fed~~~e~v~l~~sy 598 (747)
T COG3973 527 RRLKHTVIDEAQDYSRFQFTDNRTLAERASMTIVGDYGQVIYDEA--------QELSPMERMDVFFEDPSFEYVGLIASY 598 (747)
T ss_pred ccccceeechhhhcchhhhHHHhhhhhhccceEeccCCceehhhh--------cccCHHHHHHHHHhCCCchhhhhhhhh
Confidence 478999999999875543 4455566788999999999443211 11355666554442 23456799999
Q ss_pred CCchhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCC
Q 006652 444 RMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHAS 523 (637)
Q Consensus 444 R~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~ 523 (637)
|++.+|++|+|.+.-+ .....+-......|.+. .+..|..=.+.+.+++.+|.+.| .+
T Consensus 599 rSt~eI~efan~~l~d-----~~~~~p~~rsge~p~~i---------------~~~~ne~l~qr~~~ii~~mkk~~--~e 656 (747)
T COG3973 599 RSTAEIDEFANSLLPD-----RFRIHPLTRSGEKPAVI---------------MSVANEELVQRNPDIIPRMKKRG--SE 656 (747)
T ss_pred cChHHHHHHHHHhccC-----CCccchhhcCCCCceee---------------eccchHHHHHhhHHHHHHHHhcC--CC
Confidence 9999999999987753 11111111112222221 23345555667777788887776 35
Q ss_pred eEEEEcccHHHHHHHHHHhccC-----------CCCCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhh
Q 006652 524 DIGIITPYAAQVVLLKILRSKD-----------DKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVA 592 (637)
Q Consensus 524 ~I~IItpy~~Q~~~l~~l~~~~-----------~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVA 592 (637)
.|+|||+...|+..+...+... .-..+..|.-|+-.||.|||.||+.-.. +... -..+.|.||||
T Consensus 657 tiaVi~kt~~d~~~~~d~lre~~~~r~I~k~nq~f~~~~~vipvy~aKGlEFD~viv~d~s-~~e~---te~~~r~LYva 732 (747)
T COG3973 657 TIAVICKTDHDCKAVMDSLREKDSQRTIAKENQRFHHGSDVIPVYDAKGLEFDHVIVVDPS-IVEE---TEQDLRDLYVA 732 (747)
T ss_pred ceEEECCcHHHHHHHHHHHhhcchhhHHHhhcccccCCceEEEeeecccceeeeEEEecch-hhcc---cccchhhHHHH
Confidence 8999999999998876433221 1225678999999999999999986543 2111 24567899999
Q ss_pred hhccccceEEEec
Q 006652 593 VTRARRQCCLVCD 605 (637)
Q Consensus 593 lTRAk~~liivg~ 605 (637)
+|||-+.|+|+|-
T Consensus 733 ~TRAlh~l~if~~ 745 (747)
T COG3973 733 VTRALHSLYIFGE 745 (747)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999874
No 32
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.86 E-value=2.4e-21 Score=185.33 Aligned_cols=172 Identities=28% Similarity=0.346 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHccC-CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCC
Q 006652 196 NLDHSQKDAISKALSSK-NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPA 274 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~-~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~ 274 (637)
+||++|++|+..++.+. .+.+|+||||||||+++..++..+...|.+|+++||||.|++++.+++. ...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~----------~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG----------IEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT----------S-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC----------cch
Confidence 48999999999998743 5899999999999999999988888889999999999999999998842 111
Q ss_pred CcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceee
Q 006652 275 RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVL 354 (637)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~ 354 (637)
. +++..+.....
T Consensus 71 ~--------Ti~~~l~~~~~------------------------------------------------------------ 82 (196)
T PF13604_consen 71 Q--------TIHSFLYRIPN------------------------------------------------------------ 82 (196)
T ss_dssp E--------EHHHHTTEECC------------------------------------------------------------
T ss_pred h--------hHHHHHhcCCc------------------------------------------------------------
Confidence 1 11111100000
Q ss_pred eecccccccccCCCCCCEEEEecCCCcchHHHHHHHH---h-CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHH
Q 006652 355 TTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL---K-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 430 (637)
Q Consensus 355 ~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~---~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~ 430 (637)
...........+++||||||+++....+...+. . +.++|++|||+||||+-.+ +.|..+...
T Consensus 83 ----~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL~pV~~g----------~~~~~l~~~ 148 (196)
T PF13604_consen 83 ----GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQLPPVGAG----------SPFADLQES 148 (196)
T ss_dssp ----EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSHHHCSTT----------CHHHHHCGC
T ss_pred ----ccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchhcCCcCC----------cHHHHHHhc
Confidence 000000012356899999999987665543333 2 4789999999999998543 466666554
Q ss_pred cCCccccccccccCCchhHHhhchhhccCCc
Q 006652 431 YGDEVTSMLTVQYRMHEHIMNWSSKQLYNSK 461 (637)
Q Consensus 431 ~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~ 461 (637)
.+. .+.|+..+|...+-..-+...+.+|.
T Consensus 149 ~~~--~~~L~~i~Rq~~~~~~~~~~~~~~g~ 177 (196)
T PF13604_consen 149 GGI--TVELTEIRRQKDPELREAAKAIREGD 177 (196)
T ss_dssp STT--EEEE---SCCCCTHHHHHHHHHCTT-
T ss_pred CCC--eEEeChhhcCCChHHHHHHHHHHcCC
Confidence 443 67899999997443334445566554
No 33
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.79 E-value=3.6e-18 Score=203.80 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHH----cCCeEEEeccchHHHHHHHHHhcCCCceEEE
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVK----RGSKILACAASNIAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~----~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vr 269 (637)
..||+.|+.||..++.+ ..+++|+|+|||||||++..++..+-. .+.+|+.||||++|+..|.+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~---------- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSA---------- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhc----------
Confidence 46999999999999984 469999999999999999887766532 357899999999999988651
Q ss_pred eCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006652 270 LGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKN 349 (637)
Q Consensus 270 ig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~ 349 (637)
|.++.....++. .
T Consensus 1036 -Gi~A~TI~s~L~------------------------------------------------------------------~ 1048 (1747)
T PRK13709 1036 -GVDAQTLASFLH------------------------------------------------------------------D 1048 (1747)
T ss_pred -CcchhhHHHHhc------------------------------------------------------------------c
Confidence 222211111110 0
Q ss_pred CceeeeecccccccccCCCCCCEEEEecCCCcchHHHHH--HHH-h-CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHH
Q 006652 350 ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWI--ALL-K-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFE 425 (637)
Q Consensus 350 ~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~--~l~-~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~ 425 (637)
.+. ............+++|||||+++....+.. -+. . +.++|||||++||||+-.+ ..|.
T Consensus 1049 ~~~------~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~sV~aG----------~~f~ 1112 (1747)
T PRK13709 1049 TQL------QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPG----------QPFR 1112 (1747)
T ss_pred ccc------ccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEEEEecchHhcCCCCCC----------hHHH
Confidence 000 000000111245999999999885543322 222 2 4899999999999998533 4677
Q ss_pred HHHHHcCCccccccccccCCchhHHhhchhhccCCc
Q 006652 426 RLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSK 461 (637)
Q Consensus 426 rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~ 461 (637)
.+.+... ..+..|+..+|-.+++-... ..+..|+
T Consensus 1113 ~l~~~~~-i~~~~L~eI~RQ~~~lr~Av-~~~~~g~ 1146 (1747)
T PRK13709 1113 LMQTRSA-ADVAIMKEIVRQTPELREAV-YSLINRD 1146 (1747)
T ss_pred HHHHhCC-CCeEEeCeEEcCcHHHHHHH-HHHHccC
Confidence 7765432 33678999999998444333 4445443
No 34
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.78 E-value=7.7e-18 Score=198.26 Aligned_cols=168 Identities=19% Similarity=0.208 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHH---HH-cCCeEEEeccchHHHHHHHHHhcCCCceEEE
Q 006652 195 SNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQE---VK-RGSKILACAASNIAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l---~~-~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vr 269 (637)
..||+.|++||..++. .+.+++|+|+|||||||++..++..+ .+ .+.+|+.+|||++|+..|.+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~---------- 903 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA---------- 903 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHh----------
Confidence 4799999999999997 35799999999999999987665543 22 467899999999999999652
Q ss_pred eCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006652 270 LGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKN 349 (637)
Q Consensus 270 ig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~ 349 (637)
|.++.....++. .... .
T Consensus 904 -Gi~A~TIasfL~--------~~~~----------------------------------------------------~-- 920 (1623)
T PRK14712 904 -GVDAQTLASFLH--------DTQL----------------------------------------------------Q-- 920 (1623)
T ss_pred -CchHhhHHHHhc--------cccc----------------------------------------------------h--
Confidence 212111111110 0000 0
Q ss_pred CceeeeecccccccccCCCCCCEEEEecCCCcchHHH--HHHHH-h-CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHH
Q 006652 350 ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIAC--WIALL-K-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFE 425 (637)
Q Consensus 350 ~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~--l~~l~-~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~ 425 (637)
...........+++|||||+++..... ++.+. . +.++|||||++||||+-.+ ..|+
T Consensus 921 ----------~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~aG----------~~F~ 980 (1623)
T PRK14712 921 ----------QRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPG----------QPFR 980 (1623)
T ss_pred ----------hhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEEEEEcchhhcCCCCCC----------HHHH
Confidence 000000112459999999998855433 22233 2 4899999999999998544 3677
Q ss_pred HHHHHcCCccccccccccCCchhHHhhchhh
Q 006652 426 RLADLYGDEVTSMLTVQYRMHEHIMNWSSKQ 456 (637)
Q Consensus 426 rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~ 456 (637)
.+..... ..+..|+..+|-.+++.......
T Consensus 981 ~lq~~~~-~~ta~L~eI~RQ~~elr~AV~~~ 1010 (1623)
T PRK14712 981 LQQTRSA-ADVVIMKEIVRQTPELREAVYSL 1010 (1623)
T ss_pred HHHHcCC-CCeEEeCeeecCCHHHHHHHHHH
Confidence 7776432 23678999999988877666433
No 35
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=99.76 E-value=1.3e-18 Score=172.63 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=95.7
Q ss_pred CCCCEEEEecCCCcchHHH--HHHHHhCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCC
Q 006652 368 TSFDLVIIDEAAQALEIAC--WIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRM 445 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~~--l~~l~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~ 445 (637)
..+++++|||++++..-.+ +..+.+.+.++++|||.|.++.-.........+.... .....+.+.||+
T Consensus 61 ~~~~~liiDE~~~~~~g~l~~l~~~~~~~~~~l~GDp~Q~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~ 130 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGYLLLLLSLSPAKNVILFGDPLQIPYISRNDSFLLPHFISDI----------SHRFGKRTSYRC 130 (234)
T ss_pred CcCCEEEEeccccCChHHHHHHHhhccCcceEEEECchhccCCcccccceecccccce----------eeeecceeEeec
Confidence 3689999999998765333 3333455789999999998775332211111111110 113457788999
Q ss_pred chhHHhhchhhcc-CCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCe
Q 006652 446 HEHIMNWSSKQLY-NSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASD 524 (637)
Q Consensus 446 ~~~I~~~~n~~fY-~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~ 524 (637)
...++.+.+...+ ......... . .+.... .+.+ ..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~-------------------------------~~~~-~~ 166 (234)
T PF01443_consen 131 PSDRFDIISALVYTEDHVESSVE-----------F-RVETDP-------------------------------SGVD-KV 166 (234)
T ss_pred ccccceeeecccccCCceeeccc-----------c-cccccC-------------------------------cccC-cc
Confidence 9999988876611 111000000 0 000000 0111 12
Q ss_pred EEEEcccHHHHHHHHHHhccCCCCCCc-eeccCCCCCCccccEEEEEeeecCCCCccccC-CCCCchhhhhhccccceEE
Q 006652 525 IGIITPYAAQVVLLKILRSKDDKLKNM-EVSTVDGFQGREKEAIIISMVRSNSKKEVGFL-SDRRRMNVAVTRARRQCCL 602 (637)
Q Consensus 525 I~IItpy~~Q~~~l~~l~~~~~~~~~i-~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl-~d~~rlnVAlTRAk~~lii 602 (637)
+.+++.....+ +.+ .. .+.|++++||+|+|.|++....... .... .+++++|||+||||+.|++
T Consensus 167 ~~~~~~~~~~~---~~~--------~~~~~~T~~e~qG~tf~~V~l~~~~~~~---~~~~~~~~~~~~VALTR~~~~l~i 232 (234)
T PF01443_consen 167 IVYLTFTQAEK---EQL--------GSDRVFTVHESQGLTFDNVTLVLLSDTD---NELYSESRNHLYVALTRHTKSLVI 232 (234)
T ss_pred cchhhHHHHHH---HHc--------CCCceechHHcceEEeCCEEEEECCCcc---cccccCCcccEEEEccccccEEEE
Confidence 22222222221 111 12 5999999999999999886654322 1123 3689999999999999998
Q ss_pred E
Q 006652 603 V 603 (637)
Q Consensus 603 v 603 (637)
+
T Consensus 233 ~ 233 (234)
T PF01443_consen 233 L 233 (234)
T ss_pred E
Confidence 6
No 36
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.71 E-value=1.9e-16 Score=194.63 Aligned_cols=64 Identities=27% Similarity=0.358 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHH---HHH-HcCCeEEEeccchHHHHHHHH
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIIL---QEV-KRGSKILACAASNIAVDNIVE 258 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~---~l~-~~~~~ILv~a~tn~Avd~l~~ 258 (637)
..||+.|+.|+..++.+ ..+++|+|+|||||||++..++. .+. ..|.+|+.+|||++|+.+|.+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~ 1086 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS 1086 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh
Confidence 57999999999998863 46899999999999999955433 223 358899999999999999964
No 37
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=99.71 E-value=2.4e-17 Score=171.07 Aligned_cols=64 Identities=28% Similarity=0.418 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC----CeEEEeccchHHHHHHHHHhcCC
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG----SKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~----~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
||++|+++|.. ..+.++|.|+||||||+|+++++.+++..+ .+||++||||+|+.+|.+|+...
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHh
Confidence 79999999987 368999999999999999999999998764 79999999999999999999763
No 38
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=99.66 E-value=2.1e-15 Score=158.27 Aligned_cols=166 Identities=22% Similarity=0.307 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH--HHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCCCcChhHHHhhHHHHHh
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE--VKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVL 290 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l--~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~~~~~~~~~~~l~~~~~ 290 (637)
.+++|+|+||||||.++..++..+ ...+.++++++++..-...+.+.+..... +......+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-------~~~~~~~~~--------- 65 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-------PKLKKSDFR--------- 65 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-------cchhhhhhh---------
Confidence 478999999999999999999999 77889999999999888888887643210 000000000
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCC
Q 006652 291 RGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSF 370 (637)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~f 370 (637)
.....+.... ........|
T Consensus 66 ---------------------------------------------------~~~~~i~~~~----------~~~~~~~~~ 84 (352)
T PF09848_consen 66 ---------------------------------------------------KPTSFINNYS----------ESDKEKNKY 84 (352)
T ss_pred ---------------------------------------------------hhHHHHhhcc----------cccccCCcC
Confidence 0000011000 112234589
Q ss_pred CEEEEecCCCcch----------HHHHHHHHh-CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCcc-c-c
Q 006652 371 DLVIIDEAAQALE----------IACWIALLK-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEV-T-S 437 (637)
Q Consensus 371 d~vIIDEA~q~~e----------~~~l~~l~~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~-~-~ 437 (637)
|+||||||+.+.+ ...+.-+.+ ++.+|++-|+.| ++...+ -.....++.+....+... . +
T Consensus 85 DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v~f~D~~Q---~i~~~e----~~~~~~l~~~~~~~~~~~~~~~ 157 (352)
T PF09848_consen 85 DVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVVFFYDENQ---SIRPSE----IGTLENLEEIAENLGIEVRHFF 157 (352)
T ss_pred CEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEEEEEcccc---Eeeccc----CCCHHHHHHHHHhcCCccccCc
Confidence 9999999998866 244544444 467888889999 332221 012233666655554432 1 3
Q ss_pred ccccccCC--chhHHhhchhhccCCcc
Q 006652 438 MLTVQYRM--HEHIMNWSSKQLYNSKI 462 (637)
Q Consensus 438 ~L~~qYR~--~~~I~~~~n~~fY~~~l 462 (637)
.|+.|||| ++++.+|+..+++....
T Consensus 158 ~L~~q~R~~~~~~~~~wI~~ll~~~~~ 184 (352)
T PF09848_consen 158 ELKTQFRCHGSKEYIDWIDNLLDNKNI 184 (352)
T ss_pred CcCcceecCCCHHHHHHHHHHHhcccc
Confidence 79999999 99999999999887543
No 39
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.4e-14 Score=165.93 Aligned_cols=64 Identities=31% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
..++++|..++..++. ++..++.|+||||||+++...+..+..-+..+++.++|..|+..+.+.
T Consensus 318 ~~~~~~q~~a~~vl~~-de~smlt~~~~~~~~~~~~~~~~l~~~~~~~~l~aa~tG~a~~~l~e~ 381 (696)
T COG0507 318 LRLSLEQKEALDVLVV-DEVSMLTGGPGTGKTTAIKAIARLIKEGDGDQLLAAPTGKAAKRLNES 381 (696)
T ss_pred CCcCcccHHHHHHHhc-CCeeEEeccCCcchHHHHHHHHHHHHhcCCcEEeechhhHHHHHHHHh
Confidence 5789999999999887 789999999999999999998887777777799999999999888775
No 40
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.50 E-value=4.3e-13 Score=136.97 Aligned_cols=353 Identities=17% Similarity=0.100 Sum_probs=190.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEeccchHHHHHHHHHhcCC---------
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAASNIAVDNIVERLVPH--------- 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~tn~Avd~l~~rL~~~--------- 263 (637)
.+++..|++|+-... .|.-.|.|-+|||||.+++..++.|.. +..+|+++.+|......+..++.+.
T Consensus 161 anfD~~Q~kaa~~~~--~G~qrIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~p 238 (660)
T COG3972 161 ANFDTDQTKAAFQSG--FGKQRIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQP 238 (660)
T ss_pred hcccchhheeeeecC--CchhhhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCC
Confidence 468899999875543 366799999999999999999999875 4689999999999988888776543
Q ss_pred --CceEEEeCCCCCcChhHHHh-hHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 006652 264 --RVRLVRLGHPARLLPQVLES-ALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQ 340 (637)
Q Consensus 264 --~~~~vrig~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (637)
+-..++.+.-....+.+... +.........-+ .... ...
T Consensus 239 dW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fs--------------------g~g~---~F~--------------- 280 (660)
T COG3972 239 DWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFS--------------------GFGN---GFD--------------- 280 (660)
T ss_pred CccceEEEeccCCCCCCcchHHHHHHhcccccccC--------------------CCCc---chH---------------
Confidence 12223332211111111110 000000000000 0000 000
Q ss_pred HHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchH--HHHHHHHh-CCeEEEeCCCCCCCccccCH-HHHh
Q 006652 341 LAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEI--ACWIALLK-GSRCILAGDHLQLPPTVQSV-EAEK 416 (637)
Q Consensus 341 ~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~--~~l~~l~~-~~~~vlvGD~~QL~p~v~s~-~~~~ 416 (637)
...++++..+. ...-||+|+|||+|+.... .+...+.+ .+++|.++|.-|--.-+.-. .+.-
T Consensus 281 ~aC~eli~~~~--------------~~~~yD~ilIDE~QDFP~~F~~Lcf~~tkd~KrlvyAyDelQnls~~~m~ppe~i 346 (660)
T COG3972 281 AACKELIADIN--------------NKKAYDYILIDESQDFPQSFIDLCFMVTKDKKRLVYAYDELQNLSNVKMRPPEEI 346 (660)
T ss_pred HHHHHHHHhhh--------------ccccccEEEecccccCCHHHHHHHHHHhcCcceEEEehHhhhcccccCCCCHHHh
Confidence 01111221111 1346899999999987443 22233333 48999999999931111100 0000
Q ss_pred cCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhc---cCCcc--ccCCC------------------CCccCC
Q 006652 417 KGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQL---YNSKI--KAHPS------------------GVKRTS 473 (637)
Q Consensus 417 ~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~f---Y~~~l--~~~~~------------------~~~~~~ 473 (637)
.|-...--.|..-...+..-+.|...||..|...-++-.+- |.|-. -..+. .+....
T Consensus 347 Fg~d~dg~P~V~l~radr~DiVL~kCYRnsp~nLvaAHaLGfG~ysnlVqlfd~p~lW~diGY~vk~g~l~vG~~V~L~R 426 (660)
T COG3972 347 FGPDSDGEPRVNLARADRNDIVLKKCYRNSPKNLVAAHALGFGLYSNLVQLFDKPPLWDDIGYKVKKGDLQVGDRVHLSR 426 (660)
T ss_pred cCcCCCCCcccccccCccccchHHHHhcCCchhhhHHhhccchhhhHHHHHhcCchhhhhcCceeecccccCCCceeecc
Confidence 11000000000000011123679999999888766554331 33211 11111 000011
Q ss_pred CCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHH-----HHHHHHHhcc----
Q 006652 474 STEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ-----VVLLKILRSK---- 544 (637)
Q Consensus 474 ~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q-----~~~l~~l~~~---- 544 (637)
.+.....|++..+....- ..-..+..-+.|+.+|+..+..+.+.++.++||.||.+-... ..+++++...
T Consensus 427 dpessp~fl~e~~~p~~i-~~fi~fd~~~deivwi~~qI~~~~edeLe~dDIiVi~lDp~t~Rgy~~~li~sL~s~giq~ 505 (660)
T COG3972 427 DPESSPEFLPENHKPTAI-HLFIGFDNGPDEIVWIIIQIKEFREDELEQDDIIVIFLDPGTMRGYIYELIHSLKSKGIQQ 505 (660)
T ss_pred CcccCcccccccCChhhh-heeeccCCcchhhHHHHHHHHHhcccccccCCEEEEecCCccccchHHHHHHHHHHhhhhh
Confidence 111222333332211000 000012224578899988888887888999999999864331 2233333221
Q ss_pred -----C-------CCCCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEec
Q 006652 545 -----D-------DKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCD 605 (637)
Q Consensus 545 -----~-------~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~ 605 (637)
+ ..-..|.+.+|.+.+|.|+.+|+...+..-. .|....+|-+++||||.|.-+-|+|-
T Consensus 506 hl~gvd~s~e~~f~~dgkvtis~IyrAKGnEapfV~aL~a~~ls---~~la~~RN~LfTamTRSkawvrv~gl 575 (660)
T COG3972 506 HLWGVDISHETKFKQDGKVTISRIYRAKGNEAPFVYALGAAYLS---TGLADWRNILFTAMTRSKAWVRVVGL 575 (660)
T ss_pred hccccCcccccccccCceEEeeeehhccCCCCcEEEEehhhhhC---ccchhHHhHHHHHHhhhhhhhhhhcc
Confidence 0 1113688999999999999999987655432 44455566899999999999999983
No 41
>PF13245 AAA_19: Part of AAA domain
Probab=99.50 E-value=5.4e-14 Score=111.70 Aligned_cols=57 Identities=40% Similarity=0.694 Sum_probs=51.4
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHh
Q 006652 204 AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL 260 (637)
||..++..+++++|+||||||||+|+++++..++.. +++||+++|||.|+++|.+|+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 566566546788899999999999999999999976 899999999999999999998
No 42
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.40 E-value=1.1e-12 Score=161.91 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
..||+.|++||..++.+ +.+.+|+|+|||||||++..++..+-..|.+|.++|||+.|+..|.+.
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 47999999999999874 479999999999999999999988888899999999999999999886
No 43
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=99.39 E-value=5.5e-13 Score=140.25 Aligned_cols=61 Identities=33% Similarity=0.480 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHc-----cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHH
Q 006652 196 NLDHSQKDAISKALS-----SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNI 256 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~-----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l 256 (637)
.||++|++++..++. ......|.||+|||||+++.+++..+-..++.+++||||..|+.++
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 589999999888743 3567789999999999999999998888889999999999999887
No 44
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=99.37 E-value=5.2e-12 Score=119.71 Aligned_cols=150 Identities=27% Similarity=0.401 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcCCCceEEEeCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~ 272 (637)
..+|..|+.++...+. .+++++.||+|||||..+++.+.+++..+ .+|+++-|+-.+-+.+ | ++ -|+
T Consensus 3 ~p~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~l-------G--fl-pG~ 71 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDL-------G--FL-PGD 71 (205)
T ss_dssp ---SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT-------------SS----
T ss_pred cCCCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccc-------c--cC-CCC
Confidence 3579999999999885 88999999999999999999999888876 5787776654331111 0 00 011
Q ss_pred -CCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 006652 273 -PARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351 (637)
Q Consensus 273 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~ 351 (637)
..++.|. .....+. +...- .......++....
T Consensus 72 ~~eK~~p~-~~p~~d~------------------------l~~~~----------------------~~~~~~~~~~~~~ 104 (205)
T PF02562_consen 72 LEEKMEPY-LRPIYDA------------------------LEELF----------------------GKEKLEELIQNGK 104 (205)
T ss_dssp ------TT-THHHHHH------------------------HTTTS-----------------------TTCHHHHHHTTS
T ss_pred HHHHHHHH-HHHHHHH------------------------HHHHh----------------------ChHhHHHHhhcCe
Confidence 0111110 0000110 00000 0011234455666
Q ss_pred eeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHh---CCeEEEeCCCCCC
Q 006652 352 VVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLK---GSRCILAGDHLQL 405 (637)
Q Consensus 352 vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~---~~~~vlvGD~~QL 405 (637)
|-+........+.+. -.+|||||||.++..++-..+.+ ++++|+.||+.|.
T Consensus 105 Ie~~~~~~iRGrt~~---~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 105 IEIEPLAFIRGRTFD---NAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp EEEEEGGGGTT--B----SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-----
T ss_pred EEEEehhhhcCcccc---ceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCceee
Confidence 666655543333332 28999999999988777666654 4899999999993
No 45
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=99.28 E-value=3.9e-12 Score=133.81 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=55.9
Q ss_pred cccccccCCchhHHhhchhhcc-----CCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHH
Q 006652 437 SMLTVQYRMHEHIMNWSSKQLY-----NSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAH 511 (637)
Q Consensus 437 ~~L~~qYR~~~~I~~~~n~~fY-----~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~ 511 (637)
+.|++|||+++.|++++|.+|- ...-...............++.++...+ ...|++.|++.
T Consensus 1 i~L~~NyRS~~~Iv~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~e~~~i~~~ 66 (351)
T PF13361_consen 1 ITLTTNYRSSPNIVDFANRLFENILPNDNKDRYEKEIQSAENSEDGKISIIEFDN--------------EEEEAEYIAEE 66 (351)
T ss_dssp EEE-EESSS-HHHHHHHHHHHCC---TTSSSSCCCEEEESSTCEESSEEEEEESS--------------HHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHHhhhhhhccchhhhhhccccccccCCceeeccCC--------------HHHHHHHHHHH
Confidence 3699999999999999999982 2111111100000111112333333222 33689999999
Q ss_pred HHHHHHcCCCCCeEEEEcccHHHHHHHHH
Q 006652 512 AKRLIQSGVHASDIGIITPYAAQVVLLKI 540 (637)
Q Consensus 512 v~~l~~~g~~~~~I~IItpy~~Q~~~l~~ 540 (637)
+.++...|++++|||||++.+.+...+.+
T Consensus 67 I~~l~~~~~~~~diAVL~R~~~~~~~i~~ 95 (351)
T PF13361_consen 67 IKELIRNGIPPSDIAVLVRTNSQIKEIED 95 (351)
T ss_dssp HHHHHHTTS-GGGEEEEESSGGHHHHHHH
T ss_pred HHHHhhcCCCcccEEEEEECchhHHHHHH
Confidence 99998889999999999998887766653
No 46
>PRK10536 hypothetical protein; Provisional
Probab=99.21 E-value=1.5e-10 Score=112.65 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccc
Q 006652 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAAS 249 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~t 249 (637)
.....|..|..++..... .+++++.||+|||||+++.+....++..+ .+|+++-|+
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 346789999999986665 78999999999999999999988766333 455555444
No 47
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=99.08 E-value=2.4e-09 Score=129.18 Aligned_cols=149 Identities=12% Similarity=0.030 Sum_probs=83.9
Q ss_pred CCCEEEEecCCCcchH--HHHHHHHh-CCeEEEeCCCCCCCccccCHHHH-hcCcCCcHHHHHHH---Hc--CCcccccc
Q 006652 369 SFDLVIIDEAAQALEI--ACWIALLK-GSRCILAGDHLQLPPTVQSVEAE-KKGLGRTLFERLAD---LY--GDEVTSML 439 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~--~~l~~l~~-~~~~vlvGD~~QL~p~v~s~~~~-~~g~~~slf~rl~~---~~--~~~~~~~L 439 (637)
.+.+|+|||+++++.. .++..|.+ +..++++||.+|.. .+.... -..+....+.++.. .+ +....+.+
T Consensus 196 ~~~~I~VDeFqdf~~~Q~~lI~~L~~~~~~v~Vv~d~Dq~~---~~~~~~~lf~~~~~~~~~l~~~~~~~~~~~~~~i~~ 272 (1158)
T TIGR02773 196 KGAEIYIDGFHSFTPQEYSVIGALMKKAKKVTVTLTLDGPK---SLEDELSLFRATSETYYRLKELAKELGIEVEEPIFL 272 (1158)
T ss_pred CCCEEEEccCCCCCHHHHHHHHHHHHhCCcEEEEEEeCCcc---ccCCccccchhHHHHHHHHHHHHHHcCCCccccccc
Confidence 4579999999999776 45555654 57899999999951 110000 00011112233321 11 11112334
Q ss_pred ccccCC--chhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHH
Q 006652 440 TVQYRM--HEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQ 517 (637)
Q Consensus 440 ~~qYR~--~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~ 517 (637)
..+++. ++.+..+..+++-.. .. .......++.++...+ -..|++.|+..+.+++.
T Consensus 273 ~~~~~~~~~~~l~~Lek~l~~~~-~~-------~~~~~~~~I~i~~~~~--------------~~~Eae~va~~I~~l~~ 330 (1158)
T TIGR02773 273 NEYRPNKKNKELAHLEKQFDARP-FN-------AYIEEDGSISIFEANN--------------RRAEVEGVARQILRLTR 330 (1158)
T ss_pred ccccCCCCCHHHHHHHHHHhhCC-CC-------CCCCCCCCeEEEEcCC--------------HHHHHHHHHHHHHHHHH
Confidence 444542 566666555444211 00 0011122333333221 23799999999999988
Q ss_pred c-CCCCCeEEEEccc-HHHHHHHHHHh
Q 006652 518 S-GVHASDIGIITPY-AAQVVLLKILR 542 (637)
Q Consensus 518 ~-g~~~~~I~IItpy-~~Q~~~l~~l~ 542 (637)
. |+.++||+|+++. +.+...|...+
T Consensus 331 ~~g~~~~DIAVL~R~~~~y~~~i~~~f 357 (1158)
T TIGR02773 331 DKQYRYQDIAILTRDLEDYAKLVEAVF 357 (1158)
T ss_pred cCCCChhheEEEeCCHHHHHHHHHHHH
Confidence 6 8999999999999 78777776543
No 48
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.93 E-value=1.3e-08 Score=97.39 Aligned_cols=70 Identities=29% Similarity=0.364 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...+++.|.+++..++......+|.||+|||||+++...+...+..+ .++|+++||+.++.++..++.+.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 35689999999999887327899999999999999998888887765 89999999999999998887654
No 49
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.76 E-value=4.7e-08 Score=87.69 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=44.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+|.||||||||+++...+..+.. ...++++++|++..+.+..+++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~ 53 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKEL 53 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHH
Confidence 4789999999999999999999876 5689999999999999998887554
No 50
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.69 E-value=2.6e-07 Score=86.28 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCC--eEEEeccchHHHHHHHHHhcCC
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS--KILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~--~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
++.|.+++..+.. ...++|.||+|+|||++..-.+...+..++ ++++++|+...++.+.+++.+.
T Consensus 1 t~~Q~~~~~~i~~-~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp -HHHHHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc-CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccc
Confidence 5789999999985 667999999999999998877777666544 9999999999999999888654
No 51
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.65 E-value=2.6e-07 Score=92.41 Aligned_cols=58 Identities=24% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHH-HHHHHHc--CCeEEEeccc
Q 006652 192 PFNSNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEI-ILQEVKR--GSKILACAAS 249 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~-i~~l~~~--~~~ILv~a~t 249 (637)
|-....|-+|+-|+...+. .-+++.+.|.+|||||-.+.+. +.+.+.+ -.+|+|+-|+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 4456789999999998876 3367889999999999765443 3333333 3688887774
No 52
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.64 E-value=9.2e-09 Score=87.90 Aligned_cols=51 Identities=27% Similarity=0.268 Sum_probs=39.7
Q ss_pred CCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEE
Q 006652 549 KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLV 603 (637)
Q Consensus 549 ~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liiv 603 (637)
..+.+.|+|++||+|+|.||+....... .-....+.+|||+||||+.|+||
T Consensus 54 ~~~~~~Tih~akGle~d~V~v~~~~~~~----~~~~~~~~lYva~TRA~~~L~iv 104 (104)
T PF13538_consen 54 SHAYAMTIHKAKGLEFDAVIVVDPDSSN----FDELSRRLLYVAITRAKHELYIV 104 (104)
T ss_dssp CCCSEEETGGCTT--EEEEEEEEGGGGS----GCGCHHHHHHHHHTTEEEEEEEE
T ss_pred CcEEEEEhHHhcCccccEEEEEcCCccc----CCchhhccEEeeHhHhhhhhCCC
Confidence 4788999999999999999998865541 11334577999999999999986
No 53
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.59 E-value=3.2e-07 Score=80.84 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=44.8
Q ss_pred CCeEEEEcCCCCchHH-HHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 212 KNVFMLHGPPGTGKTT-TVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~-ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
..+.+|.=.||+|||+ ++.+++.+.++++.|+||++||...++++.+-|....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCC
Confidence 3578899999999999 7999999999999999999999999999999997654
No 54
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.55 E-value=8.7e-07 Score=100.67 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHcc--CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDHSQKDAISKALSS--KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...|++.|++|+..++.. ....+++||+|||||.+....+...+..|.++|+++||..-+..+.+++.+.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 457999999999998862 4579999999999999999888888888999999999999999999998753
No 55
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=98.51 E-value=3.4e-08 Score=109.66 Aligned_cols=377 Identities=25% Similarity=0.302 Sum_probs=221.0
Q ss_pred CCCCHHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhcCC----Cc
Q 006652 195 SNLDHSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLVPH----RV 265 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~~~----~~ 265 (637)
..++..|..++..... .....++.|+ |+|+|.+++.-+..+... -.+++.+.+++.+++......... +.
T Consensus 119 ~~~~~~~~~~l~~~~~~~l~e~~P~L~~G~-~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ir~y~~~~v~~~~ 197 (775)
T KOG1804|consen 119 PRLNALQKGALLAITVPLLRELPPSLLIGP-GTGETLELAQAVKSLLQQEEAKILILLHSESAADIYIREYLHPYVEEGL 197 (775)
T ss_pred hhhhhhhcccccceeccccccCCcccccCC-ccccceeecchhhcccccccccceEeechhHHHHHHHHHhhcccccccc
Confidence 4556666655543322 3456788888 999999888777666443 578999999999976655554321 11
Q ss_pred eE---EEeCCCCCcC----hhHHHhh--HHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Q 006652 266 RL---VRLGHPARLL----PQVLESA--LDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEER 336 (637)
Q Consensus 266 ~~---vrig~~~~~~----~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 336 (637)
+. .|+....+.. +.+..++ ++..+.
T Consensus 198 ~~~~~~r~~~~~r~l~~~~pvv~~~~~if~~~~~---------------------------------------------- 231 (775)
T KOG1804|consen 198 PEATPLRVYSRKRPLAQVNPVVLQYCFIFDSHIT---------------------------------------------- 231 (775)
T ss_pred cccccccceeecccccccCCceeeeeeeccchhh----------------------------------------------
Confidence 10 0111111110 0111110 000000
Q ss_pred HHHHHHHHHHhhcCceeeeecccccc---cccCCCCCCEEEEecCCCcchHHHHHHHH---hCCeEEEeCCCCCCCcccc
Q 006652 337 KRQQLAVTDVIKNADVVLTTLTGAVS---RKLDNTSFDLVIIDEAAQALEIACWIALL---KGSRCILAGDHLQLPPTVQ 410 (637)
Q Consensus 337 ~~~~~~~~~il~~~~vi~~T~~~~~~---~~l~~~~fd~vIIDEA~q~~e~~~l~~l~---~~~~~vlvGD~~QL~p~v~ 410 (637)
...-...++++ .+|++.|...... .......|.+++.|||.++++...+.|+. .+.+++|+||+.|+-|.+.
T Consensus 232 -~~~pq~~~~~~-Hrv~~~~~~~s~~~~~l~~~~~~~t~~~~~eaae~~~~~~l~P~~~~~~~~~~~L~~~~~ql~~~l~ 309 (775)
T KOG1804|consen 232 -FRRPQVEDLFK-HRVVVVTLSQSQYLTPLGLPVGFFTHILLDEAAQAMECELLMPLALPSSGTRIVLAGPHLQLTPFLN 309 (775)
T ss_pred -hccchhhhhcc-cceeEeecceeecccccCCCCCceeeeeHHHHHhcCCceeecccccCCCCceeeecccccccccchh
Confidence 00011233444 7788888776652 23445588999999999999999999975 3489999999999999987
Q ss_pred CHHHHhcCcCCcHHHHHHHHcC--CccccccccccCCchhHHhhchhhccCCccccCCCCCc-cCCCCCCcEEEEEccCC
Q 006652 411 SVEAEKKGLGRTLFERLADLYG--DEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVK-RTSSTEPTLLLIDIAGC 487 (637)
Q Consensus 411 s~~~~~~g~~~slf~rl~~~~~--~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~-~~~~~~~~~~~id~~~~ 487 (637)
+.......+. .+..++...|. ....+-.+.|||++-.|..|.+..||...........+ .......+..|....+.
T Consensus 310 s~~~~~~~~~-~~~~~~~~~y~~~~p~~~g~~~n~~~a~~~v~~~~~~~~il~~~p~~a~~k~~~~rl~~p~~~~~~~~~ 388 (775)
T KOG1804|consen 310 SVAREEQALH-LLLCRLPEPYIVFGPPGTGKTENYREAIAIVSFTSPHFYILVCAPSNASGKQPAHRLHYPLTFSTARGE 388 (775)
T ss_pred hhhhhhhhhh-hcccccccccccccCCCcCCccchHHHHHHHHhcchHHHhhcccccccccccccccccccccccccccc
Confidence 7655443332 22222222221 11245679999999999999999999753322222111 11112345556555553
Q ss_pred cccccccCCCCccCHHHHHHHHHHHHHHHHcC------CCCCeEEEEcccHHHHHHHHHHhccCCCCCCceeccCCCCCC
Q 006652 488 DMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG------VHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQG 561 (637)
Q Consensus 488 ~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g------~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~i~V~Tvd~~QG 561 (637)
+.... ....++|..|...++.-++.+.+.. -....+|++++|..|+..++..+-.. .++.+.-.---+|
T Consensus 389 ~~~~~--~~~~~~~~~~v~~~~~~~e~~~~~~~~~i~i~t~~sag~~~~~g~~v~~f~hil~De---Ag~stEpe~lv~i 463 (775)
T KOG1804|consen 389 DVRAK--SSTAWYNNAEVSEVVEKVEELRKVWPYRWGITTCTSAGCVTSYGFQVGHFRHILVDE---AGVSTEPELLVPG 463 (775)
T ss_pred ccccc--chhHHhhhHHHHHHHHHHHHHhhccceEEEEeeccceeeeecccccccceeeeeecc---cccccCccccccc
Confidence 32211 1245567788888888888776432 12346899999999998888543111 1222222222222
Q ss_pred cccc---EEEEEeee--------cCCCCccccCCCCCchhhhhhccccceEEEecCCccCCc----hHHHHHHHHHHHcC
Q 006652 562 REKE---AIIISMVR--------SNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSD----GFLKRLIEYFEEHA 626 (637)
Q Consensus 562 ~E~d---vVIis~vr--------s~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~----~~~~~l~~~~~~~~ 626 (637)
..+- .|++++.. +..... +..+...++.|+|||-...-.+|+.+.+..- .+|....-.+-.+.
T Consensus 464 ~~~~~~~~vvLsgdh~Qlgpv~~s~~A~~--~gl~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~l~~~ 541 (775)
T KOG1804|consen 464 KQFRQPFQVVLSGDHTQLGPVSKSARAEE--LGLDRSLLERALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILCLENR 541 (775)
T ss_pred ccccceeEEEEccCcccccccccchhhhh--hcccHHHHHHHHHHHhhccccCCCcccccchhhHHHHhhhhHhhhcccc
Confidence 2222 55555532 122222 2234778999999999999999999988743 46666666665555
Q ss_pred cc
Q 006652 627 EY 628 (637)
Q Consensus 627 ~~ 628 (637)
.|
T Consensus 542 l~ 543 (775)
T KOG1804|consen 542 LY 543 (775)
T ss_pred cc
Confidence 43
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.49 E-value=9.7e-07 Score=97.24 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCC-eEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|.+.|.+||..++. ++-.++++|.|+|||.++..++..++..++ ++|+++||...++.+.+++.+.
T Consensus 113 ~~~r~~Q~~av~~~l~-~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK-NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999987 556799999999999998887776666665 9999999999999999998764
No 57
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.44 E-value=2.4e-06 Score=82.56 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|++|+...+. ....+|.+|+|+|||.+ +..++..+... +.++++++||...+..+.+.+.+.
T Consensus 20 ~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 20 EKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred CCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 3578999999999887 66799999999999987 44455555443 568999999999999887766443
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.44 E-value=2.4e-06 Score=97.46 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHHHHHHcc-----CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 193 FNSNLDHSQKDAISKALSS-----KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~-----~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+...|++.|++|+..+... ....+++||.|||||.+....+...+..|.++++++||...+..+.+.+.+.
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l 333 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKL 333 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 5568999999999988772 1257999999999999988888888888999999999999999998887654
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.41 E-value=2.5e-06 Score=96.58 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHHHHcc--C---CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 192 PFNSNLDHSQKDAISKALSS--K---NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~--~---~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.++..|++.|++|+..++.. . ...+|+||.|||||.+....+...+..|.++++++||...+..+.+.+.+.
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHH
Confidence 35568999999999988862 1 147999999999999988777777888999999999999999988877653
No 60
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.36 E-value=3.1e-06 Score=92.00 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHH-HHHH------cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIIL-QEVK------RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~-~l~~------~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++-|.+|+..++. ..-+++.+|+|||||.+..-.+. .+.. .+.++|+++||...+..+.+.+..
T Consensus 22 ~~p~~iQ~~ai~~~~~-g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~ 95 (434)
T PRK11192 22 TRPTAIQAEAIPPALD-GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE 95 (434)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH
Confidence 4578899999999997 45699999999999987544333 3332 135899999999999888776544
No 61
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.35 E-value=7.2e-06 Score=95.37 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCCCCCHHHHHHHHHHHcc-----CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 193 FNSNLDHSQKDAISKALSS-----KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~-----~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
+...+++.|.+|+..++.. ..-.+|+||.|||||.++...+...+..|.++++++||..-+....+.+.+
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~ 522 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKE 522 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4557899999999998862 124799999999999998877777778899999999999999998887654
No 62
>PRK02362 ski2-like helicase; Provisional
Probab=98.34 E-value=1.9e-06 Score=99.56 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++.|.+|+...+.+....+|.+|.|||||.+..-.+...+.++.++++++|+.+-+.+..+++.+.
T Consensus 22 ~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~ 90 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERF 90 (737)
T ss_pred CcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHh
Confidence 468999999998855557789999999999999877666666667889999999999999999888654
No 63
>PTZ00424 helicase 45; Provisional
Probab=98.34 E-value=4.1e-06 Score=90.02 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-.++++|+|||||.+..-.+...+. .+.++|+++||...+..+.+.+...
T Consensus 49 ~~~~~~Q~~ai~~i~~-~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 119 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD-GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLAL 119 (401)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHH
Confidence 4689999999999987 445779999999999877655555554 3568999999999988887765443
No 64
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.33 E-value=3.2e-06 Score=91.33 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 192 PFNSNLDHSQKDAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.....|.+.|.+|+...... ..-.+|..|+|+|||.+.++++..+..+ +||++||...++...+++...
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC---EEEEECcHHHHHHHHHHHHHh
Confidence 34567999999999988874 6788999999999999999999876544 999999999999998776543
No 65
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=2.6e-06 Score=85.33 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEecc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAA 248 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~ 248 (637)
...|+.|+..++++.. +++.+-.||+|||||...+..+..++..+ ++|+++=|
T Consensus 127 ~~kt~~Q~~y~eai~~-~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEE-HDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHh-cCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 4579999999998876 88999999999999999999999988876 69999888
No 66
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.29 E-value=3.3e-06 Score=92.42 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++-|.+|+..++. ..-.+++||.|||||.+..-.+.+.+.. +.++|+++||...++.+.+.+..
T Consensus 25 ~~~t~iQ~~ai~~~l~-g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~ 94 (460)
T PRK11776 25 TEMTPIQAQSLPAILA-GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRR 94 (460)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 4589999999999987 5579999999999998754444444433 34799999999999998876654
No 67
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.27 E-value=4.5e-06 Score=93.90 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++-|.+++..++. ..-+++++|.|||||.+..--+...+. .+.++||++||...+..+.+.+..
T Consensus 27 ~~ptpiQ~~ai~~ll~-g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~ 96 (629)
T PRK11634 27 EKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTD 96 (629)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4678999999999887 557899999999999875443333332 245899999999999988777654
No 68
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.27 E-value=4.6e-06 Score=90.99 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-Hc--------CCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-KR--------GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~--------~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++-|.+|+..++. ..-+++++|.|||||.+..--+.+.+ .. +.++|+++||...+..+.+.+..
T Consensus 22 ~~pt~iQ~~ai~~il~-g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVLE-GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 4678999999999887 45689999999999987544333333 21 23799999999999988887654
No 69
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.26 E-value=7.2e-06 Score=97.50 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=59.3
Q ss_pred CCCCCCCHHHHHHHHHHHcc-----CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 192 PFNSNLDHSQKDAISKALSS-----KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~-----~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.++..+++.|.+|+..++.. ..-.+++||.|||||.++...+...+..|.++||++||..-+..+.+.+.+
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHH
Confidence 45668999999999988872 135799999999999988777766677899999999999999888777654
No 70
>PRK01172 ski2-like helicase; Provisional
Probab=98.25 E-value=5.6e-06 Score=94.89 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..|++.|.+|+..... ...++|.+|.|||||.+....+...+..+.++++++|+.+-+.+..+.+.+
T Consensus 21 ~~l~~~Q~~ai~~l~~-~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~ 87 (674)
T PRK01172 21 FELYDHQRMAIEQLRK-GENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSR 87 (674)
T ss_pred CCCCHHHHHHHHHHhc-CCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHH
Confidence 4589999999998765 678999999999999987766666666788999999999999998887754
No 71
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.25 E-value=5.5e-06 Score=98.83 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+.+-|+.++..++. ..-+++++|+|||||+.+.-++..+...+.++|+++||..-+..+.+++.+.
T Consensus 77 ~~p~~iQ~~~i~~il~-G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR-GDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred CCCcHHHHHHHHHHhC-CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHH
Confidence 4578999999999987 5567799999999998776666666667899999999999999998887654
No 72
>PRK00254 ski2-like helicase; Provisional
Probab=98.23 E-value=7e-06 Score=94.65 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHH-HHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTV-VEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti-~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..|++-|.+|+...+.+...++|.+|.|||||.+. ..++..+...+.++++++|+.+-+.+..+++.+
T Consensus 22 ~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 22 EELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH
Confidence 56899999999875444678999999999999987 445555666788999999999999999988764
No 73
>PRK04296 thymidine kinase; Provisional
Probab=98.22 E-value=3.4e-06 Score=80.39 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=32.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.+.+|.||||+||||.+..++..+...+.+|++..|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 378999999999999999999999999999998854
No 74
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.19 E-value=1.3e-05 Score=86.79 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHH-HHHHH---------cCCeEEEeccchHHHHHHHHHhc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII-LQEVK---------RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i-~~l~~---------~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
..+++-|.+|+..++. ..-.++++|.|||||.+..-.+ ..+.. .+.++||++||...+..+.+.+.
T Consensus 29 ~~pt~iQ~~aip~il~-g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTLA-GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 4578999999999987 5568899999999998754333 33332 13579999999999998876553
No 75
>PRK14974 cell division protein FtsY; Provisional
Probab=98.18 E-value=1.9e-05 Score=81.33 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=41.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc-c--hHHHHHHHHHhcCCCceEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA-S--NIAVDNIVERLVPHRVRLV 268 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~-t--n~Avd~l~~rL~~~~~~~v 268 (637)
.+.++.||||+|||||+..++..+...|.+|++++. + ..|++.+.......++.++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~ 199 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI 199 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee
Confidence 478899999999999999999998888888876643 2 4566666555444455443
No 76
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.17 E-value=4.6e-06 Score=95.86 Aligned_cols=62 Identities=29% Similarity=0.448 Sum_probs=51.3
Q ss_pred HHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 201 QKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 201 Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+..|..++.+++.++|+|++||||||.+...+......+.+|+|+.|+..|+..+.+++.+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~ 67 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLAS 67 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHH
Confidence 34556666766889999999999999998877765555567999999999999999999853
No 77
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.16 E-value=4.9e-06 Score=78.63 Aligned_cols=63 Identities=24% Similarity=0.440 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHc------cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 196 NLDHSQKDAISKALS------SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
+|.+.|.+|+..++. ..+..+|.||+|||||.+++.++..+.. ++++++|+...++...+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHH
Confidence 578999999999985 2578999999999999999999988887 99999999999999998883
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=98.15 E-value=1.6e-05 Score=94.74 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++-|+.++..++. ..-+++++|.|||||+.+.-++..+...+.++|+++||..-+..+.+++.+.
T Consensus 79 ~~pt~iQ~~~i~~il~-g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLL-GESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred CCCcHHHHHHHHHHHC-CCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 4678999999999987 5677899999999998766666666667899999999999999999998765
No 79
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.13 E-value=1.5e-05 Score=94.47 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|-+.|.+||..+.. ...-.+|+.|.|||||.|++.++..+++. .++||++++++.-++...+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc
Confidence 3578999999987663 23468899999999999999999988765 379999999999999998887654
No 80
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.12 E-value=8.6e-06 Score=89.82 Aligned_cols=69 Identities=29% Similarity=0.295 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+-.-|..||.+... .+.-+||.=.+|||||.|+.++|..|++.+ +|||.+|-.|+.++.......++
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHh
Confidence 3456789999988775 234588888899999999999999999876 89999999999999888765543
No 81
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=98.12 E-value=3.8e-07 Score=84.41 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=31.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHcCC-eEEEeccchHHHHHHHHHhc
Q 006652 216 MLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLV 261 (637)
Q Consensus 216 lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rL~ 261 (637)
+|.|+.|.|||+++--.+.+++..+. +|+||||+..++..+.+-+.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~ 47 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAE 47 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHH
Confidence 58999999999999988888877764 99999999999999988653
No 82
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.11 E-value=5e-06 Score=74.01 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH------cCCeEEEeccchHHHHHHHHHh
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~tn~Avd~l~~rL 260 (637)
.+..+|+||||+|||+++..++..+.. ...-+.+.++.......+...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 58 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEI 58 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHH
Confidence 568999999999999999999998865 2333444455444344444444
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=3.4e-05 Score=86.65 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|=+.|.+|+...+... +-.+|.-|+|+|||.+.+.++..+ ++++||++||...+++..+.+.+.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 568899999999988622 357899999999999998877654 578999999999999988887654
No 84
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.09 E-value=1.3e-05 Score=79.56 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=64.0
Q ss_pred CCCCCCCCHHHHHHHHHHHc---cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 191 KPFNSNLDHSQKDAISKALS---SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 191 ~~~~~~Ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+..+|++-|+.|-...+. ...-++||+-.|+|||..+-..|.+.+++|.+|.+.+|--.-+-++..||.+.
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHh
Confidence 34568899999988766554 56789999999999999999999999999999999999999999999998764
No 85
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.09 E-value=8e-06 Score=94.11 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=48.3
Q ss_pred HHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 201 QKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 201 Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+..|..++.+++.++|+|||||||||.+.-.+......+.+|+|+.||..|+..+.+++.+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~ 70 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAE 70 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHH
Confidence 34456666666788999999999999998765543322345899999999999999999853
No 86
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.07 E-value=2.6e-05 Score=87.12 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHH-HHHHHHc---------CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEI-ILQEVKR---------GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~-i~~l~~~---------~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++-|.+++-.++. ..-+++++|.|||||.+..-. +..+... +.++|+++||...+..+.+.+.++
T Consensus 30 ~~ptpiQ~~~ip~~l~-G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 30 TRCTPIQALTLPVALP-GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 4679999999999997 556889999999999875443 4444321 358999999999999998876554
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=2.3e-05 Score=85.97 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=44.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 216 MLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 216 lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
|++||.|+|||.+...++...+..|+++|+++|+..-+..+.+++.+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~ 48 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYR 48 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 589999999999999999998999999999999999999999998753
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.01 E-value=8.1e-05 Score=73.53 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 191 KPFNSNLDHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 191 ~~~~~~Ln~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..|...-|.....++..... ..+..+|+||||||||+.+..+..++...|.+++++...
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 44554567777777776543 235789999999999999999998888888888887763
No 89
>PTZ00110 helicase; Provisional
Probab=98.00 E-value=5.2e-05 Score=84.34 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHH-HHHHHHHHH-------cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTV-VEIILQEVK-------RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti-~~~i~~l~~-------~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++-|..|+-.++. ..-+++.+|.|||||.+. .-++..+.. .+..+||++||...+..+.+.+.+.
T Consensus 151 ~~pt~iQ~~aip~~l~-G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS-GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 4689999999999997 456678999999999863 233333332 2467999999999999888877654
No 90
>PRK14701 reverse gyrase; Provisional
Probab=97.97 E-value=6.4e-05 Score=92.02 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.+++-|+.++..++. ..-+++++|.|||||+...-.+..+..+|.++||++||..-+..+.+++...
T Consensus 79 ~pt~iQ~~~i~~il~-G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 79 EFWSIQKTWAKRILR-GKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHH
Confidence 578999999999998 5567899999999999654444444557889999999999999999888653
No 91
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.94 E-value=4.2e-05 Score=92.14 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHccC-CeEEEEcCCC-CchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 195 SNLDHSQKDAISKALSSK-NVFMLHGPPG-TGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~-~~~lI~GpPG-TGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
..++..|..|+..++.+. .+.+|.|..| ||||+++.+++..+-.+|.+|.++||++.|+..+.+.
T Consensus 280 ~~~~~~q~~Av~~il~dr~~v~iv~~~GgAtGKtt~l~~l~~~a~~~G~~V~~lApt~~a~~~L~e~ 346 (1623)
T PRK14712 280 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQD 346 (1623)
T ss_pred cccchhHHHHHHHHhcCCCceEEEEecccccccHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhc
Confidence 457889999999999854 3556666555 9999999988888888999999999999999998764
No 92
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.93 E-value=6.2e-05 Score=85.65 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHcc---------CCeEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 197 LDHSQKDAISKALSS---------KNVFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~---------~~~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
.-..|..||..++.. ..-.+|+.|.|||||.|++.++..+.. ...+||+++++..-++.+.+.+...+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 457899999887651 246899999999999999999988875 35799999999999999998876553
No 93
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.93 E-value=0.00015 Score=69.35 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=39.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc-ch--HHHHHHHHHhcCCCceEEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA-SN--IAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~-tn--~Avd~l~~rL~~~~~~~vr 269 (637)
.+.++.||+|+|||||++.++.++..++++|.++|. |. .|++.+..--...++.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 367899999999999999999999888888866543 33 4666664433333555544
No 94
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.92 E-value=4.5e-05 Score=85.53 Aligned_cols=68 Identities=26% Similarity=0.415 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..||..|..|+..+..+ ....|++|.+|+|||-+-.++|...+.+|+.+|++-|--+-...+.+|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHH
Confidence 57999999999998875 368999999999999999999999999999999999977777777777643
No 95
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.91 E-value=0.00019 Score=72.27 Aligned_cols=58 Identities=28% Similarity=0.404 Sum_probs=41.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec---cchHHHHHHHHHhcCCCceEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA---ASNIAVDNIVERLVPHRVRLVRL 270 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a---~tn~Avd~l~~rL~~~~~~~vri 270 (637)
.+.++.||||+|||||++.++..+.+.|.+|++++ +...|.+.+.......++.++..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~ 133 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQ 133 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeC
Confidence 46677799999999999999999988888887765 23345566655444445555433
No 96
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.91 E-value=0.00012 Score=78.14 Aligned_cols=36 Identities=39% Similarity=0.439 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.+.++.|+||+|||||+..++.++.+.|.+|++++.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 467899999999999999999999888888876643
No 97
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.89 E-value=6.8e-05 Score=83.07 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHH-HHHHHHHHH---------cCCeEEEeccchHHHHHHHHHhc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTV-VEIILQEVK---------RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti-~~~i~~l~~---------~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
..+++-|.+|+..++. ..-+++.+|.|||||.+- .-++..+.. .+.++|+++||...+..+.+.+.
T Consensus 142 ~~ptpiQ~~aip~il~-g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS-GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 5789999999999997 667899999999999753 334444332 35689999999998887766543
No 98
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.89 E-value=5.2e-05 Score=86.51 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhc---CCCceEE
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLV---PHRVRLV 268 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~---~~~~~~v 268 (637)
.|.+.|+.||...+.....++|..|-|+|||-++--.|...+.. +.+++.++|+++-+.+..+++. .+|+++.
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 78889999999888766899999999999998776666555554 6899999999999999999887 4566553
No 99
>PRK13766 Hef nuclease; Provisional
Probab=97.88 E-value=0.00012 Score=85.44 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEeccchHHHHHHHHHhcC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..-+-|..++..++. . -.+|..|.|+|||.+....+..++. .+.++|+++||...+....+.+.+
T Consensus 15 ~~r~yQ~~~~~~~l~-~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 15 EARLYQQLLAATALK-K-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CccHHHHHHHHHHhc-C-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 456789999998887 3 6899999999999987777766653 578999999999988887777654
No 100
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.87 E-value=9.4e-05 Score=81.27 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHH-HHHHHHHHc---------CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVV-EIILQEVKR---------GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~-~~i~~l~~~---------~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++-|.+|+..++. ..-+++.+|.|||||.+.. -++..+... +.++|+++||...+..+.+.+...
T Consensus 108 ~~~~~iQ~~ai~~~~~-G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l 185 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA-GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAAL 185 (475)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHh
Confidence 4589999999999887 4567799999999997543 344444442 358999999999999988876543
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.00012 Score=82.50 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+-..|+--.+..+. ..-+-|.+|+|+||||....+...+..+|++++++-||...|.+..+||.+.
T Consensus 81 ~~~ws~QR~WakR~~r-g~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 81 FRPWSAQRVWAKRLVR-GKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred CCchHHHHHHHHHHHc-CCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 3566789888888887 5567789999999999999999999999999999999999999999999765
No 102
>KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair]
Probab=97.84 E-value=3.8e-06 Score=92.71 Aligned_cols=68 Identities=28% Similarity=0.351 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC
Q 006652 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+...|+.+|..++...+ +..-+|.| ||||||.++...+.+++.. ...|++.|.||.|++.+.+++...
T Consensus 10 ~~~~l~~~q~~~~~~~~--~~~rviag-pgsgkt~~lt~~v~yli~~~~ik~~eI~~~t~tnka~~~~~~~l~~i 81 (853)
T KOG2108|consen 10 LYSLLNKSQRFSALSPL--RRKRVIAG-PGSGKTLVLTERVAYLINFNNIKPDEILINTGTNKAADSIKLNLIAI 81 (853)
T ss_pred hhhhhhhhhhhhhcCCC--cccceeec-CCCCccchhhHHHHHHHhccCCCHHHHHHHhcCCccHHHHHHhHHHH
Confidence 44567888887776432 34566777 9999999999999999864 367999999999999999998653
No 103
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=0.00016 Score=79.20 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig 271 (637)
..+++.|.+||..++. ..-+++.+|.|||||.+-. +-.+ ..+...||++|+.+-+....++|...++...-++
T Consensus 10 ~~~r~~Q~~ai~~~l~-g~dvlv~apTGsGKTl~y~--lp~l-~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~ 82 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL-GRDCFVVMPTGGGKSLCYQ--LPAL-CSDGITLVISPLISLMEDQVLQLKASGIPATFLN 82 (470)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCCcHhHHHH--HHHH-HcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4688999999999998 4468899999999996432 2222 3466899999999998888888877776655444
No 104
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.81 E-value=0.00034 Score=65.62 Aligned_cols=34 Identities=44% Similarity=0.613 Sum_probs=30.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+.++.||||+|||+++..++..+.+.+.+|+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5689999999999999999999988888887655
No 105
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.81 E-value=0.00011 Score=84.64 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHH-HHHHHHH-cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE-IILQEVK-RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~-~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++-|.+|+..++. ..-+++..|.|||||.+-.- ++..+.. .+.++|+++||.+-+..+.+++.+.
T Consensus 35 ~~p~~~Q~~ai~~il~-G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 35 HRPWQHQARAAELAHA-GRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred CcCCHHHHHHHHHHHC-CCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 4689999999999887 56789999999999986443 3334433 3569999999999999999988765
No 106
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.81 E-value=9.5e-05 Score=83.20 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH----------H--HH---cCCeEEEeccchHHHHHHHHHhcC
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ----------E--VK---RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~----------l--~~---~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.-|.+++..++. +..++++|+.|||||+.+-..+.. + +. .+.+|++++||..++..+.+++.+
T Consensus 167 ~iQ~qil~~i~~-gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWIS-RKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHh-CCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 467777777765 778999999999999986544432 1 11 246899999999999998888754
No 107
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.79 E-value=5.1e-05 Score=90.01 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=51.5
Q ss_pred CCCCCH-HHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDH-SQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~-~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...|-- +.+..|..++..+++++|.|+|||||||-+-.++...-. ...+|+++-|-..|+-.+++|+.+.
T Consensus 63 ~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~e 134 (1283)
T TIGR01967 63 PDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEE 134 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHH
Confidence 344543 334566777777889999999999999987766554321 1247888899999999999998754
No 108
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.79 E-value=0.00013 Score=81.46 Aligned_cols=55 Identities=20% Similarity=0.405 Sum_probs=48.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEeccchHHHHHHHHHhcCCCc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAASNIAVDNIVERLVPHRV 265 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~tn~Avd~l~~rL~~~~~ 265 (637)
.+++.+|.+|=||||||.+..-+...+ .++.+||++++-++-+.++..|+...++
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l 103 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGL 103 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCC
Confidence 468999999999999999988888876 5689999999999999999999976654
No 109
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00012 Score=76.76 Aligned_cols=122 Identities=22% Similarity=0.171 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEeccchHHHHHHHHHhcCC-Cc---eEEEeCC
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAASNIAVDNIVERLVPH-RV---RLVRLGH 272 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~tn~Avd~l~~rL~~~-~~---~~vrig~ 272 (637)
-.-|...+..++. ..+||.-|-|=|||.+++-.+...+ ..+.++|++|||...|..-++.+.+. ++ +++-+..
T Consensus 17 R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltG 94 (542)
T COG1111 17 RLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTG 94 (542)
T ss_pred HHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecC
Confidence 4678888999987 4899999999999999888887544 44568999999999998877766443 11 1110000
Q ss_pred CCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Q 006652 273 PARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADV 352 (637)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~v 352 (637)
. -....| ...+..++|
T Consensus 95 e------------------------------------------v~p~~R----------------------~~~w~~~kV 110 (542)
T COG1111 95 E------------------------------------------VRPEER----------------------EELWAKKKV 110 (542)
T ss_pred C------------------------------------------CChHHH----------------------HHHHhhCCE
Confidence 0 001111 234677899
Q ss_pred eeeeccccccccc----CCCCCCEEEEecCCCcchHH
Q 006652 353 VLTTLTGAVSRKL----DNTSFDLVIIDEAAQALEIA 385 (637)
Q Consensus 353 i~~T~~~~~~~~l----~~~~fd~vIIDEA~q~~e~~ 385 (637)
+++|.....+... .-..+.+||+|||..++--.
T Consensus 111 fvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGny 147 (542)
T COG1111 111 FVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNY 147 (542)
T ss_pred EEeccHHHHhHHhcCccChHHceEEEechhhhccCcc
Confidence 9999998765543 34589999999998875543
No 110
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.75 E-value=0.00045 Score=71.06 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=40.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec-cch--HHHHHHHHHhcCCCceEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-ASN--IAVDNIVERLVPHRVRLV 268 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~tn--~Avd~l~~rL~~~~~~~v 268 (637)
.+.++.||||+|||||+..++..+...+.+|++++ .+. .|++.+...-...++.++
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~ 173 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI 173 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEE
Confidence 47789999999999999999999988888888765 332 345555433333344444
No 111
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.74 E-value=0.00025 Score=83.22 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHH-HHHHHHH--------cCCeEEEeccchHHHHHHHHHhc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE-IILQEVK--------RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~-~i~~l~~--------~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
..|++-|.+|+..++. ...++|.+|.|||||.+..- ++..+.. .+.++|+++|+.+.+..+.++|.
T Consensus 31 ~~~tpiQ~~Ai~~il~-g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~ 105 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE-GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLE 105 (876)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHH
Confidence 3589999999999876 66899999999999987544 3444432 13469999999999988877653
No 112
>PRK10867 signal recognition particle protein; Provisional
Probab=97.72 E-value=0.00035 Score=74.50 Aligned_cols=56 Identities=27% Similarity=0.264 Sum_probs=39.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe-ccchH--HHHHHHHHhcCCCceEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC-AASNI--AVDNIVERLVPHRVRLV 268 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~-a~tn~--Avd~l~~rL~~~~~~~v 268 (637)
.+.++.||||+|||||++.++.++... |.+|+++ +-+.. |++.+.......+++++
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 367899999999999999999999888 8888655 44433 34455433333455544
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.70 E-value=0.00056 Score=80.37 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=47.7
Q ss_pred CCCHHHHH---HHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 196 NLDHSQKD---AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 196 ~Ln~~Q~~---Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
...+.|.+ +|..++......+|.+|+|||||..-.--+......+++|+|.|||..-.+.+..+
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHH
Confidence 45788986 56666766678899999999999754433333333788999999999987777553
No 114
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.70 E-value=0.00089 Score=61.16 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc----hHHHHHHHHHhcCCCceEEEeCCCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS----NIAVDNIVERLVPHRVRLVRLGHPA 274 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t----n~Avd~l~~rL~~~~~~~vrig~~~ 274 (637)
.+...|.++||+||||.+..++...+..|.+|+++=|- ...-.++.+++. ++.+.+.|...
T Consensus 2 ~G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~--~v~~~~~g~~~ 66 (159)
T cd00561 2 KGLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLP--NIEIHRMGRGF 66 (159)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCC--CcEEEECCCCC
Confidence 47889999999999999999999999999999994332 334455666662 67788877643
No 115
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.00023 Score=71.49 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=45.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec---cchHHHHHHHHHhcCCCceEEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA---ASNIAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a---~tn~Avd~l~~rL~~~~~~~vr 269 (637)
-+.++.|..|+||||||..++.++.++|++|++.| |--.|++.|..--.+.|++++.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc
Confidence 36789999999999999999999999999998774 4445677776655556777765
No 116
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=0.00021 Score=82.28 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=49.1
Q ss_pred CHHHHHHHHHH---HccCCeEEEEcCCCCchHH-HHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcC
Q 006652 198 DHSQKDAISKA---LSSKNVFMLHGPPGTGKTT-TVVEIILQEVKRG--SKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 198 n~~Q~~Av~~~---l~~~~~~lI~GpPGTGKT~-ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
=+.|++....+ +...+..++.+|.|||||- +++..+.+..+.+ .+|.+|+.|++....+.+-|.+
T Consensus 12 y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 12 YPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 36777665544 4467899999999999995 5555555555455 7999999999988887777665
No 117
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.65 E-value=0.00032 Score=73.89 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=47.1
Q ss_pred HHHHHHHHHccC-CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 201 QKDAISKALSSK-NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 201 Q~~Av~~~l~~~-~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
|.+|+..+...+ +.++|.+|+|+|||.+....+. ..+.+.++++|+++.++...+++.+.
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l---~~~~~~~~~~P~~aL~~~~~~~~~~~ 62 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLL---HGENDTIALYPTNALIEDQTEAIKEF 62 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHH---HcCCCEEEEeChHHHHHHHHHHHHHH
Confidence 888998888744 4789999999999987643332 35567899999999999888887653
No 118
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.65 E-value=9.8e-05 Score=75.50 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=31.5
Q ss_pred CEEEEecCCCc--chHHHHHHHHhCCeEEEeCCCCCCCcc
Q 006652 371 DLVIIDEAAQA--LEIACWIALLKGSRCILAGDHLQLPPT 408 (637)
Q Consensus 371 d~vIIDEA~q~--~e~~~l~~l~~~~~~vlvGD~~QL~p~ 408 (637)
.+++|||.... ...+.+.|.+-...++|||=.-.=|..
T Consensus 106 tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF 145 (436)
T COG2256 106 TILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSF 145 (436)
T ss_pred eEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCe
Confidence 79999999877 455788888888999999998876654
No 119
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.65 E-value=0.00018 Score=80.02 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHH-HHHHHHHH-cCCeEEEeccchHHHHHHHHHhc
Q 006652 203 DAISKALSSKNVFMLHGPPGTGKTTTVV-EIILQEVK-RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~-~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
++|..++......+|.+|.|||||..-. ..+..+.. .+.+|+|++||..-.+.+.+.+.
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 3455666667889999999999996543 33444443 57999999999999888887443
No 120
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.64 E-value=0.00073 Score=71.71 Aligned_cols=45 Identities=33% Similarity=0.382 Sum_probs=35.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe-ccch--HHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC-AASN--IAVDNIV 257 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~-a~tn--~Avd~l~ 257 (637)
.+.++.||||+|||||++.++..+.+.|.+|+++ +-+. .|++.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk 148 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLK 148 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHH
Confidence 4788999999999999999999988888887655 4343 4555553
No 121
>PF13173 AAA_14: AAA domain
Probab=97.64 E-value=0.00044 Score=61.31 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAV 253 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Av 253 (637)
+.+.+|.||.|+||||++..++..+. .+++++.+.......
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH
Confidence 56899999999999999999998877 667777777655433
No 122
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=97.63 E-value=0.00029 Score=77.34 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=39.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...+|.|-+||||||.|..+...+ +.+|+++|..|+.|+-.+|.
T Consensus 72 s~~~itG~AGsGKst~i~~l~~~l-----~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTSIQTLNENL-----DCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHHHHHHHHhc-----CEEEEcchHHHHHhhhcccc
Confidence 368999999999999998887765 88899999999999998876
No 123
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00017 Score=64.99 Aligned_cols=56 Identities=32% Similarity=0.444 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcc--CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHH
Q 006652 199 HSQKDAISKALSS--KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVD 254 (637)
Q Consensus 199 ~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd 254 (637)
+.+..++...+.. ....+|+||||||||+++..++..+...+..++.+..+.....
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh
Confidence 4555666666653 5689999999999999998888888777777877776554443
No 124
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.63 E-value=0.00064 Score=76.84 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig 271 (637)
..+++-|.+|+..++. ..-+++..|.|+|||.+.. +-.++ .+..++|++|+.+-+..-.++|...++.+..++
T Consensus 12 ~~fr~~Q~~~i~~il~-g~dvlv~~PTG~GKTl~y~--lpal~-~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~ 84 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD-GRDVLVVMPTGGGKSLCYQ--VPALL-LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLN 84 (591)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCccHhHHHH--HHHHH-cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4689999999999998 4468899999999997753 22333 455788999999998888888877776655443
No 125
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.62 E-value=0.00038 Score=78.63 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEE
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLV 268 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~v 268 (637)
..+.+.|.+|+..++. ..-+++.+|.|+|||.+-. +-.+.. +..++|++|+.+-+....+.+...++...
T Consensus 24 ~~~r~~Q~~ai~~il~-g~dvlv~apTGsGKTl~y~--lpal~~-~g~tlVisPl~sL~~dqv~~l~~~gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS-GRDCLVVMPTGGGKSLCYQ--IPALVL-DGLTLVVSPLISLMKDQVDQLLANGVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHH--HHHHHc-CCCEEEEecHHHHHHHHHHHHHHcCCcEE
Confidence 4678999999999987 5567889999999996532 333333 45789999999998888888877665543
No 126
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.61 E-value=0.00032 Score=74.82 Aligned_cols=57 Identities=26% Similarity=0.288 Sum_probs=38.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEec-cchH--HHHHHHHHhcCCCceEEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACA-ASNI--AVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a-~tn~--Avd~l~~rL~~~~~~~vr 269 (637)
.++++.||||+|||||++.++.++. +.|.+|++++ -+.. |.+.+...-...++++..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 3688999999999999999999986 5677776554 4443 344444333333444443
No 127
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.60 E-value=0.00047 Score=84.53 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHcc-CCeEEEEcCCCC-chHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 197 LDHSQKDAISKALSS-KNVFMLHGPPGT-GKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~-~~~~lI~GpPGT-GKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
.+..|..|+..++.+ ..+.+++|+.|. |+++++.+++..+-.+|.+|.++|||+.|+..+.+.
T Consensus 414 ~~~~~~~av~~~~q~~~~~~il~g~~G~aG~g~~l~~l~~~a~~~G~~V~glAPt~~a~~~L~~~ 478 (1747)
T PRK13709 414 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQD 478 (1747)
T ss_pred cchhhhHHHHHHhcccCcEEEEEcCCcchHHHHHHHHHHHHHHhCCcEEEEEeCcHHHHHHHHHh
Confidence 356888899887773 357889988884 777676776666667899999999999999998765
No 128
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.60 E-value=0.0027 Score=59.55 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=47.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchH----HHHHHHHHhcCCCceEEEeCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI----AVDNIVERLVPHRVRLVRLGHP 273 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~----Avd~l~~rL~~~~~~~vrig~~ 273 (637)
..+.++|.+++|+||||.+..++...+..|.+|+++=|=.. .-..+.+++. ++.+.+.|..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~--~v~~~~~g~~ 85 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG--GVEFHVMGTG 85 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC--CcEEEECCCC
Confidence 47899999999999999999999999999999999866432 3344444442 5667776653
No 129
>PLN03025 replication factor C subunit; Provisional
Probab=97.60 E-value=0.00027 Score=73.35 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHcc--CCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 198 DHSQKDAISKALSS--KNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 198 n~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
++.....+...+.. .+..+++||||||||+++..++..+...
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 44455555555542 2468999999999999999998887543
No 130
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00019 Score=74.33 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=37.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc-ch--HHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA-SN--IAVDNIVER 259 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~-tn--~Avd~l~~r 259 (637)
...++.||+|+||||+++.++..+...|.+|++++- +. .|++.+..-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~y 291 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 291 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH
Confidence 477899999999999999999999988888876554 43 366666553
No 131
>PRK08181 transposase; Validated
Probab=97.59 E-value=0.00016 Score=72.41 Aligned_cols=55 Identities=27% Similarity=0.416 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHH---HccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 194 NSNLDHSQKDAISKA---LSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~---l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.+.++..|..++..+ +......+++||||||||+.+.++...+++.|.+|++++.
T Consensus 85 ~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 85 VPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 467899999988654 2344578999999999999999999999999999988764
No 132
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.59 E-value=0.00089 Score=67.65 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHH---c-cCCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKAL---S-SKNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 198 n~~Q~~Av~~~l---~-~~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
++.+++|+.... . ..++.+|.||||+||||++..+...+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 455555655432 2 245899999999999999888765543
No 133
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.59 E-value=0.00034 Score=73.93 Aligned_cols=49 Identities=16% Similarity=0.407 Sum_probs=42.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
++|.||.|||||.+....+...+. .+.++++++|+...+..+.+++...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~ 52 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKEL 52 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHH
Confidence 689999999999988777766653 3579999999999999999998764
No 134
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.57 E-value=0.00016 Score=71.33 Aligned_cols=50 Identities=32% Similarity=0.454 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHc-----c--CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 198 DHSQKDAISKALS-----S--KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 198 n~~Q~~Av~~~l~-----~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
++.|+.|+..+.. . ...++++||||||||+.+.+++.++.+.|.+|++++
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5667777766553 1 146899999999999999999999999999998885
No 135
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.56 E-value=0.0016 Score=60.13 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=43.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHH----HHHHHHHhcCCCceEEEeCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIA----VDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~A----vd~l~~rL~~~~~~~vrig~ 272 (637)
.+.+.|.+++|.||||.+..++.+++..|.+|+++=|-... =.++.+++ ++.+.+.|.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~---~~~~~~~g~ 66 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH---GVEFQVMGT 66 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc---CcEEEECCC
Confidence 58899999999999999999999999999999988443322 22344443 556666654
No 136
>PRK12377 putative replication protein; Provisional
Probab=97.55 E-value=0.00017 Score=71.38 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHc-------cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 198 DHSQKDAISKALS-------SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 198 n~~Q~~Av~~~l~-------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
++.|+.|+..+.. ....++++||||||||+.+.+++..++..|..|++++.
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 4566666554332 22468999999999999999999999999988877654
No 137
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.55 E-value=0.00011 Score=69.84 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=40.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
.++|.||||||||+.+..++...++.|.++++.++.. ..+.+.+++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~-~~~~~~~~~~~~g 50 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE-SPEELIENAESLG 50 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHcC
Confidence 3689999999999999999999999999999998754 4566666665443
No 138
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00027 Score=74.34 Aligned_cols=47 Identities=32% Similarity=0.369 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH----cCCeEEEec-cc--hHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK----RGSKILACA-AS--NIAVDNIVE 258 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~----~~~~ILv~a-~t--n~Avd~l~~ 258 (637)
..+.++.||+|+|||||++.++..+.. .|.+|.+++ -| ..|++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~ 227 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT 227 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH
Confidence 357889999999999999999988763 466776554 33 345555433
No 139
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.54 E-value=0.00047 Score=77.90 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH----------cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK----------RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~----------~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..||.-|..+...|..++...||.+|-|+|||-++.-.|.++++ .+-+|+.+||+.+.+.++.+...+
T Consensus 109 ~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 109 EEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred HHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999988777777776 346999999999999999887654
No 140
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.53 E-value=0.003 Score=73.78 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHH
Q 006652 194 NSNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAV 253 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Av 253 (637)
...|-+.|..++..++.. .+-+||-=..|.|||-.+..++.++...| ++|||++|+.-.-
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~ 212 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQH 212 (956)
T ss_pred CCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHH
Confidence 356889999999887762 24568888999999999988888887766 6999999985443
No 141
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.52 E-value=0.001 Score=69.63 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH-HHHcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQ-EVKRG 240 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~-l~~~~ 240 (637)
.+...+..||||||||++..++-.+ .+.+|
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 4567899999999999999987766 56666
No 142
>KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair]
Probab=97.51 E-value=0.00016 Score=80.20 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=37.0
Q ss_pred CCCCCCEEEEecCCCcchH-HHHHHHHhCCeEEEeCCCCCCCccccCHHHH
Q 006652 366 DNTSFDLVIIDEAAQALEI-ACWIALLKGSRCILAGDHLQLPPTVQSVEAE 415 (637)
Q Consensus 366 ~~~~fd~vIIDEA~q~~e~-~~l~~l~~~~~~vlvGD~~QL~p~v~s~~~~ 415 (637)
....||+||+||+++++.. ..++...+.++.+.+||..|-...+......
T Consensus 438 ~~a~~d~Ii~D~~~d~t~c~~~li~i~~~~~~~~~gd~~q~~~~f~~~~~a 488 (853)
T KOG2108|consen 438 GLAKFDYIILDEAQDCTPCIQNLILIQKHNIKVFVGDFHQSIYSFRGANSA 488 (853)
T ss_pred cccccceeeehhhhcCchHHHHHHhhhhcccccccCchHhhhhhhhhHHHH
Confidence 3458999999999999764 3455555667799999999977766554443
No 143
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00038 Score=72.60 Aligned_cols=37 Identities=43% Similarity=0.627 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc-C-CeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR-G-SKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~-~~ILv~a~ 248 (637)
.+++++.||+|+|||||++.++..++.. | .+|.+++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 4689999999999999999999987643 5 57776654
No 144
>PRK09694 helicase Cas3; Provisional
Probab=97.50 E-value=0.00062 Score=78.77 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...++-|..+.... ..+++++|.+|.|+|||..+...+..++..+ .+|+++.||.+.++.+.+|+.+
T Consensus 285 ~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 285 YQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 35688898764432 2478999999999999999988888887664 7999999999999999999864
No 145
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.48 E-value=0.0011 Score=76.95 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCCHHHHH---HHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHH
Q 006652 196 NLDHSQKD---AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIV 257 (637)
Q Consensus 196 ~Ln~~Q~~---Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~ 257 (637)
..-+.|.+ +|..++......+|++|+|||||..-.--+.. ...+.+++|.|||..-.+.+.
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~-~~~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLA-QSDQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHH-hcCCCcEEEEeCcHHHHHHHH
Confidence 45688988 88888887788999999999999753322221 125789999999999998885
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.47 E-value=0.0013 Score=77.70 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=50.2
Q ss_pred CCCHHHHH---HHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 196 NLDHSQKD---AISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 196 ~Ln~~Q~~---Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
..-+.|.+ +|..++......+|.+|+|||||.. ++-.+......+++|+|.|+|..--+.+..+
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 34578887 7888887778889999999999974 3333444455789999999999999888664
No 147
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.47 E-value=0.0002 Score=71.93 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=24.6
Q ss_pred CEEEEecCCCc--chHHHHHHHHhCCeEEEeCCCCC
Q 006652 371 DLVIIDEAAQA--LEIACWIALLKGSRCILAGDHLQ 404 (637)
Q Consensus 371 d~vIIDEA~q~--~e~~~l~~l~~~~~~vlvGD~~Q 404 (637)
.+++|||.... ....++.|.+....++|+|-.--
T Consensus 224 TilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 224 TILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred eEEEeHHhhhhhhhhhhcccceeccCceEEEecccC
Confidence 78899998665 33456677777778888887654
No 148
>PRK06526 transposase; Provisional
Probab=97.46 E-value=0.00014 Score=72.36 Aligned_cols=55 Identities=24% Similarity=0.475 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHH--HccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 194 NSNLDHSQKDAISKA--LSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~--l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
...++..|...+... +......++.||||||||+++.++...++..|.+|++.+.
T Consensus 78 ~~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 78 QRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CCCcchHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 356787776554321 1234678999999999999999999999999999877544
No 149
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.46 E-value=0.00014 Score=74.69 Aligned_cols=60 Identities=23% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHHHHHcc------------CCeEEEEcCCCCchHHHHHHHHHHHHHcCC-----eEEEeccchHHHHHHHHHhc
Q 006652 201 QKDAISKALSS------------KNVFMLHGPPGTGKTTTVVEIILQEVKRGS-----KILACAASNIAVDNIVERLV 261 (637)
Q Consensus 201 Q~~Av~~~l~~------------~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-----~ILv~a~tn~Avd~l~~rL~ 261 (637)
|.+||...+.. ..-.++.-.+|+|||.+++.++..+...+. ++||++|+ ..+..-...+.
T Consensus 2 Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 2 QLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 77777766432 245667778999999999999998876532 59999998 44444444443
No 150
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.46 E-value=0.00036 Score=70.80 Aligned_cols=36 Identities=36% Similarity=0.540 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHc-C-CeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKR-G-SKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~-~-~~ILv~a~ 248 (637)
.++++.||+|+|||||++.++.++... | .+|.+++.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 378899999999999999999999875 4 78876664
No 151
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.45 E-value=0.0003 Score=83.49 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=45.8
Q ss_pred HHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhcC
Q 006652 201 QKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 201 Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+..|..++..+++++|.|++||||||.+-.++..+-.. ...|.++-|-..|+-+++.|+.+
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~ 140 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAE 140 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHH
Confidence 344566666668899999999999999776555443211 23677788999999999998764
No 152
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0006 Score=77.90 Aligned_cols=64 Identities=28% Similarity=0.445 Sum_probs=52.8
Q ss_pred HHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 200 SQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 200 ~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+..+..++..+.+++|.||||+||||-+-..+...-- .+.+|.++=|-..|+-.+++|+.+.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHH
Confidence 445567777777899999999999999999888776653 3468999999999999999999764
No 153
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00079 Score=69.68 Aligned_cols=54 Identities=26% Similarity=0.240 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe-ccch--HHHHHHHHHhcCCCc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC-AASN--IAVDNIVERLVPHRV 265 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~-a~tn--~Avd~l~~rL~~~~~ 265 (637)
..++++.||.|+|||||++.++..+..++.+|.++ +-+- .|++.+...-...++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgv 262 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCC
Confidence 45788999999999999999999988888888655 4343 356666555443343
No 154
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.00088 Score=74.79 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=26.8
Q ss_pred HHHHHHHccCCe---EEEEcCCCCchHHHHHHHHHHHHH
Q 006652 203 DAISKALSSKNV---FMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 203 ~Av~~~l~~~~~---~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+++..++..+.+ .|++||||+||||++..++..+.-
T Consensus 26 ~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 26 TALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 355555554333 689999999999999888877753
No 155
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.00074 Score=72.38 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=24.6
Q ss_pred HHHHHccCC---eEEEEcCCCCchHHHHHHHHHHHH
Q 006652 205 ISKALSSKN---VFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 205 v~~~l~~~~---~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
+..++.... ..+++|||||||||++..++..+.
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444444332 369999999999999988887764
No 156
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.40 E-value=0.00077 Score=71.44 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHc------cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALS------SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
-++|.+.+...+. ..+..+|+||||||||+++..++.++..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566666666654 2357899999999999999988887753
No 157
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.39 E-value=0.001 Score=72.73 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=61.0
Q ss_pred CCCCCCCCHHHHHHHHHHHc--cCC---eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 191 KPFNSNLDHSQKDAISKALS--SKN---VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 191 ~~~~~~Ln~~Q~~Av~~~l~--~~~---~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..++..|+..|++++..+.. +.+ .-||||-=|||||-+++-.+...+..|.++.++|||..-+..-.+.+.+
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHH
Confidence 34667999999999999886 122 4589999999999999999999999999999999999988777766654
No 158
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.39 E-value=0.00033 Score=65.84 Aligned_cols=39 Identities=38% Similarity=0.633 Sum_probs=31.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
...-.+++||||||||+.+++++..++..|.+++++..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 345689999999999999999999999999999988753
No 159
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.00053 Score=75.50 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+.+..++... ..+|++||+||||||++..++..|.-
T Consensus 25 v~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 25 VRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33455555532 35699999999999999988887753
No 160
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0016 Score=72.85 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.9
Q ss_pred HHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 203 DAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 203 ~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
+.+.+++..+ ..+|++|||||||||++..+++.+.
T Consensus 26 ~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 26 RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555532 3568999999999999988887774
No 161
>PRK09183 transposase/IS protein; Provisional
Probab=97.37 E-value=0.00038 Score=69.67 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHH--HccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 193 FNSNLDHSQKDAISKA--LSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~--l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+.+.+|..|...+... +.....++|.||||||||+.+..+...++..|.+|+++.
T Consensus 81 ~~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 81 FATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred cCCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567788877776543 234567889999999999999999888888899998775
No 162
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.35 E-value=0.00039 Score=74.79 Aligned_cols=58 Identities=26% Similarity=0.441 Sum_probs=45.2
Q ss_pred HHHHccCCeEEEEcCCCCchHHHHHHHHHHH--HHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 206 SKALSSKNVFMLHGPPGTGKTTTVVEIILQE--VKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 206 ~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l--~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
-.+...+.+.+|.|-+||||||-|-..+... .+.|++|-++-|-..|+-.++.|+.+-
T Consensus 274 l~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 274 LKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHH
Confidence 3344457899999999999999877655443 334677999999999999999998753
No 163
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.35 E-value=0.00023 Score=70.21 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
-+..|.+||||||||+|+....++|.-
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 468999999999999999999888753
No 164
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.33 E-value=0.00068 Score=77.30 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.++-|.+++..++......+++.|.|||||.+++.-+..+.. ..+++++++||..-++.+.+.+.+.
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 789999999999874447888999999999866422221111 2357777889999999998887654
No 165
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32 E-value=0.00072 Score=72.47 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~ 248 (637)
.++++.||+|+|||||++.++..+. ..+.+|.+++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4788999999999999999998887 45677765544
No 166
>COG4889 Predicted helicase [General function prediction only]
Probab=97.31 E-value=0.0016 Score=72.27 Aligned_cols=64 Identities=22% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 194 NSNLDHSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
..++-+.|+.|+..++. ...=-||-+ ||||||.|...+...+.. .+||+++||-+..-.-+...
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsLkisEala~--~~iL~LvPSIsLLsQTlrew 226 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSLKISEALAA--ARILFLVPSISLLSQTLREW 226 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHHHHHHHHhh--hheEeecchHHHHHHHHHHH
Confidence 45788999999999986 112235554 899999999988877765 89999999987655444433
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00019 Score=64.05 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAV 253 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Av 253 (637)
...++|.||||||||+++..++..+...+..+++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 467899999999999999999888776665677777665443
No 168
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0019 Score=70.83 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=26.3
Q ss_pred HHHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 202 KDAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 202 ~~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+++..++.. ....|++||||||||+++..++..+.
T Consensus 25 ~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 25 VRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555542 23569999999999999888887774
No 169
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.30 E-value=0.00087 Score=76.38 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+++.|.+++-.++...+ .+.+.+.|||||.+.+--+..-+..+..++|++||..-+....+-+..
T Consensus 92 ~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~ 157 (970)
T PRK12899 92 DMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGS 157 (970)
T ss_pred CCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHH
Confidence 378999999887777444 889999999999887654443333566799999999888777766543
No 170
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.29 E-value=0.0011 Score=73.68 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+..|-..|.+.+..||. ..++|..|-|+|||.+++-++...++ ++.+|+++|||.--|..-..++...
T Consensus 60 ~~~lR~YQ~eivq~ALg--kNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 60 NLELRNYQEELVQPALG--KNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred cccccHHHHHHhHHhhc--CCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhc
Confidence 45688999999999995 58999999999999999998888876 4689999999998887766665443
No 171
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.28 E-value=0.00048 Score=67.67 Aligned_cols=53 Identities=26% Similarity=0.574 Sum_probs=42.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhcCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
....++|.||||||||+.+.+.+...+.+ |.++++++..... +.+.+.+...+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~-~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP-EELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H-HHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH-HHHHHHHHHcC
Confidence 35689999999999999999999998888 9999999975544 77777776654
No 172
>PRK06893 DNA replication initiation factor; Validated
Probab=97.28 E-value=0.0015 Score=64.21 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
++..+++||||||||+.+.++...+..++.++.++..+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 45679999999999999999999999888888777764
No 173
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.00056 Score=68.13 Aligned_cols=38 Identities=34% Similarity=0.504 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..-.++.||||||||+.++++...+++.|.+|++++.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45789999999999999999999999889999988753
No 174
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.23 E-value=0.004 Score=60.74 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=28.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~ 248 (637)
...|+||+|+|||+.+.++...+.+ ++.+|+.+..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 6889999999999999999888876 4677777654
No 175
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.21 E-value=0.0012 Score=70.99 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCCEEEEecCCCcchH--HHHHHHHhCCeEEEeCCC
Q 006652 369 SFDLVIIDEAAQALEI--ACWIALLKGSRCILAGDH 402 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~--~~l~~l~~~~~~vlvGD~ 402 (637)
...+|||||+..+... ..+.+.+....++++|-.
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~at 127 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGAT 127 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeC
Confidence 4579999999877543 455555556778888754
No 176
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important; this model represents specifically RexB proteins as found in Streptococcus and Lactococcus.
Probab=97.20 E-value=0.014 Score=70.00 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=91.0
Q ss_pred CCCEEEEecCCCcchHH--HHHHHH-hCCeEEEeCCCCCCCcc--ccCHHHHhcCcCCcHHHHHHHHcCCcccccccccc
Q 006652 369 SFDLVIIDEAAQALEIA--CWIALL-KGSRCILAGDHLQLPPT--VQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQY 443 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~~--~l~~l~-~~~~~vlvGD~~QL~p~--v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qY 443 (637)
+-..|+|||+++.+..+ ++..|. .++++++++|.+|..+. +....-. ......+.++...++-. ...+..+|
T Consensus 185 ~~~~i~IDgF~~FTp~Q~~vIe~L~~~~~~v~v~l~~D~~~~~~~~~~~~LF--~~s~~~L~~la~~~~i~-v~~~~~~~ 261 (1076)
T TIGR02774 185 KNTVLVIDGFTRFSAEEEALVSLLHGKGVEIIIGAYASQKAYKSSFSEGNLY--QASVKFLHDLAQKYQTK-AEFISSTH 261 (1076)
T ss_pred CCCEEEEccCCCCCHHHHHHHHHHHHhCCEEEEEEEcCccccccCCCcccch--HHHHHHHHHHHHHcCCC-cccCcccc
Confidence 44799999999997764 555665 46889999999885531 1100000 00001222333333322 33445889
Q ss_pred CCchhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCC
Q 006652 444 RMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHAS 523 (637)
Q Consensus 444 R~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~ 523 (637)
|.+++|..+.+.++-.... .... ..........+.++...+ -..|++.|...+.+|+..|+.++
T Consensus 262 R~~~~L~~Le~~~~~~~~~-~~~~-~~~~~~~~~~I~i~~a~n--------------~~~Eve~va~~I~~lv~~g~ry~ 325 (1076)
T TIGR02774 262 ESKDSFDKLSRLLEASHDF-SELA-LDLDDKDKDNLTIWSCLT--------------QKEEVEHVARSIRQKLYEGYRYK 325 (1076)
T ss_pred ccCHHHHHHHHHHhhcccC-Cccc-ccCCCCCCCceEEEEcCC--------------HHHHHHHHHHHHHHHHHcCCChh
Confidence 9999998887733321000 0000 000001112333332222 23799999999999998899999
Q ss_pred eEEEEcccHHH-HHHHHHHhc
Q 006652 524 DIGIITPYAAQ-VVLLKILRS 543 (637)
Q Consensus 524 ~I~IItpy~~Q-~~~l~~l~~ 543 (637)
||+|+++-..+ ...|...+.
T Consensus 326 DIaVl~rd~~~Y~~~i~~iF~ 346 (1076)
T TIGR02774 326 DILVLLGDVDSYQLQLGKIFD 346 (1076)
T ss_pred heEEEcCCHHHHHHHHHHHHh
Confidence 99999998887 566666553
No 177
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0017 Score=74.03 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+|++|||||||||++..++..+.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcc
Confidence 468999999999999988887764
No 178
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.002 Score=71.19 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=26.5
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+.+..++... ..+|+.|||||||||++..++..+.
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455555422 3669999999999999988887764
No 179
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.18 E-value=0.00074 Score=67.76 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 196 NLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+.++|.+++..++. ..++++|.||+||||||++..++..+...+.+|+.+-
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 578889999888775 4679999999999999999998887755556666554
No 180
>PRK05973 replicative DNA helicase; Provisional
Probab=97.17 E-value=0.00071 Score=66.22 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=45.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
...+++|.|+||+|||+...+++...+++|.++++.+.--. .+.+.+|+...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~g 115 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRALG 115 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHcC
Confidence 45699999999999999999999999889999999988655 578888876654
No 181
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.17 E-value=0.0036 Score=69.86 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
....+-|..++-.++. .. +.+...|+|||.+.+-.+......|..++|+|||..-+....+.+.+
T Consensus 102 ~~p~~VQ~~~~~~ll~-G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 102 QRHFDVQLMGGLALLS-GR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CCCChHHHHHHHHHhC-CC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHH
Confidence 4456899999887776 33 89999999999988877766667799999999999888877776654
No 182
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.17 E-value=0.00083 Score=68.90 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEe
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK--RGSKILAC 246 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~ 246 (637)
..++++|...+..++......+|.||+||||||++.+++..+.. .+.+|+++
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti 180 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL 180 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe
Confidence 35788999999999887788999999999999999988877753 34566553
No 183
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0041 Score=69.43 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=26.8
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+.+..++..+ ..+|++||||+|||+++..++..+.-
T Consensus 25 v~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 25 VKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 33455555433 25699999999999999988887653
No 184
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.15 E-value=0.0013 Score=74.16 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
++-+.|.+++.......+ .+++-+.|||||.|.+--+......|..++|+|||..-+....+.+.
T Consensus 68 glrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~ 132 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMG 132 (762)
T ss_pred CCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHH
Confidence 345555555554444355 69999999999998776554445568899999999988877777653
No 185
>PRK04195 replication factor C large subunit; Provisional
Probab=97.14 E-value=0.0043 Score=68.18 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHcc------CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 197 LDHSQKDAISKALSS------KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~------~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++.+.+.+...+.. ...++|+||||||||+++..++..+
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 355565666555541 4679999999999999988777654
No 186
>PRK08116 hypothetical protein; Validated
Probab=97.09 E-value=0.0012 Score=66.37 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHc----------cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 198 DHSQKDAISKALS----------SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 198 n~~Q~~Av~~~l~----------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
++.|..|+..+.. .+..++++|+||||||+.+.+++..+.+.+.++++++.
T Consensus 90 ~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 90 DKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 5666666554441 12248899999999999999999999988888877763
No 187
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.08 E-value=0.0018 Score=63.58 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHc---cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 191 KPFNSNLDHSQKDAISKALS---SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 191 ~~~~~~Ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..+...-|.....++..... ..+.++|+||||||||+.+..+..++...+..+.++..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34445567777777766543 34689999999999999999999888887777766654
No 188
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.07 E-value=0.00073 Score=66.87 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=43.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
....++|.||||||||+.+...+...+++|.++++++.. ...+.+.+++...+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e-e~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE-EHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee-CCHHHHHHHHHHhC
Confidence 346899999999999999999998888899999999965 45667777766544
No 189
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0036 Score=69.20 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHH--HcCC-e-EEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEV--KRGS-K-ILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~--~~~~-~-ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...++-|..++-.++. ..-.+++++.|||||.. +.-++..+. .... . .||++||...+..+.+.+...
T Consensus 50 ~~pt~IQ~~~IP~~l~-g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 50 EEPTPIQLAAIPLILA-GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 4568999999999998 56788999999999864 444555544 2222 2 899999999999998877554
No 190
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00039 Score=68.96 Aligned_cols=26 Identities=38% Similarity=0.695 Sum_probs=22.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
-+.+.+++||||||||+...++++.|
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhh
Confidence 46799999999999999888877766
No 191
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0036 Score=70.34 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+..|++||||||||+++..++..+.-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 45699999999999999999888753
No 192
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.02 E-value=0.00098 Score=65.53 Aligned_cols=51 Identities=10% Similarity=0.270 Sum_probs=40.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...+++|.||||||||+.+..++..++++|.+++++++.... +++.+.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~-~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT-TEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHH
Confidence 356899999999999999999999998999999999865544 455544443
No 193
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0047 Score=66.78 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEec
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACA 247 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a 247 (637)
.+++.|.||+|+||||++..++..+... +++|.+++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4688899999999999999999888765 46676554
No 194
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.01 E-value=0.0015 Score=66.74 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEeccc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAAS 249 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~t 249 (637)
..+++.|...+..++......+|.||+||||||++..++..+... +.+|+++-.+
T Consensus 115 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 115 GIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 347888888999888878899999999999999999888776553 5777766543
No 195
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.00 E-value=0.0038 Score=67.60 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~ 248 (637)
...+|+||||||||+.+.++...+.. ++.+|++++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45889999999999999888777654 4677776654
No 196
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.00 E-value=0.0013 Score=67.61 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEeccch
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAASN 250 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~tn 250 (637)
..+++.|.+.+..++......+|.||+||||||++.+++..+. .+..+|+++-.+.
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 3478889999998888788999999999999999998887764 3456777655443
No 197
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.99 E-value=0.0029 Score=71.93 Aligned_cols=68 Identities=24% Similarity=0.290 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHH-HHHHHHHHc-------CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVV-EIILQEVKR-------GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~-~~i~~l~~~-------~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|..|+..+.. ...+||.+|-|||||-++. -++..+++. |-.+|.++|=.+-...+..+|...
T Consensus 21 ~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 5789999999999986 6789999999999998754 444555554 246899999998888888888643
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.97 E-value=0.0013 Score=60.50 Aligned_cols=41 Identities=24% Similarity=0.520 Sum_probs=35.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVD 254 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd 254 (637)
+++|.||||||||+++..++..+...+.+|++.+......+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 36899999999999999999999888999999887655443
No 199
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0055 Score=68.35 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=26.6
Q ss_pred HHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 203 DAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 203 ~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+.+..++... ..+|++|||||||||++..++..+.-
T Consensus 26 ~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 26 QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3455555432 35699999999999999988887753
No 200
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.95 E-value=0.0011 Score=66.61 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
..+++|.||||||||+...+++.+.+++|.++++++.-.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 468999999999999999999999888999999999754
No 201
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=96.95 E-value=0.013 Score=61.95 Aligned_cols=262 Identities=19% Similarity=0.182 Sum_probs=140.3
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHH-HHHHHHHHHH-----------HcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTT-TVVEIILQEV-----------KRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~-ti~~~i~~l~-----------~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.-++-|+.|+=..+. ++-.+-.+-.|||||. .+.-++..+. ..|..-+++|||...+..|.+--.+.
T Consensus 267 eptpIqR~aipl~lQ-~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ-NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCchHHHhhccchhc-cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 448899999987777 5566677889999993 3333333332 13678899999999998887765443
Q ss_pred ----CceEEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 006652 264 ----RVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQ 339 (637)
Q Consensus 264 ----~~~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (637)
+.+++++-.-.++...-
T Consensus 346 ~~~lg~r~vsvigg~s~EEq~----------------------------------------------------------- 366 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFEEQG----------------------------------------------------------- 366 (673)
T ss_pred cccccceEEEEecccchhhhh-----------------------------------------------------------
Confidence 45666553332211110
Q ss_pred HHHHHHHhhcCceeeeeccccc----ccccCCCCCCEEEEecCCCc----chHHHHHHHHhCCeEEEeCCCCCCCccccC
Q 006652 340 QLAVTDVIKNADVVLTTLTGAV----SRKLDNTSFDLVIIDEAAQA----LEIACWIALLKGSRCILAGDHLQLPPTVQS 411 (637)
Q Consensus 340 ~~~~~~il~~~~vi~~T~~~~~----~~~l~~~~fd~vIIDEA~q~----~e~~~l~~l~~~~~~vlvGD~~QL~p~v~s 411 (637)
-.+-..+.|+++|..-+. ...+......+|+.|||..+ .|++....|. |+|.+-.+
T Consensus 367 ----fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~------------~mPssn~k 430 (673)
T KOG0333|consen 367 ----FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILE------------QMPSSNAK 430 (673)
T ss_pred ----hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHH------------hCCccccC
Confidence 012234566666655433 22334456799999999765 5666654442 23322111
Q ss_pred HHHHhcCcCCcHHHHHHHHcCCc----cccccccccCCchhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCC
Q 006652 412 VEAEKKGLGRTLFERLADLYGDE----VTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGC 487 (637)
Q Consensus 412 ~~~~~~g~~~slf~rl~~~~~~~----~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~ 487 (637)
... -...--+++...+... .++|++. -|+|.+-.++..+|-+ +.++.+...|.
T Consensus 431 ~~t----de~~~~~~~~~~~~~~k~yrqT~mfta--tm~p~verlar~ylr~-----------------pv~vtig~~gk 487 (673)
T KOG0333|consen 431 PDT----DEKEGEERVRKNFSSSKKYRQTVMFTA--TMPPAVERLARSYLRR-----------------PVVVTIGSAGK 487 (673)
T ss_pred CCc----cchhhHHHHHhhcccccceeEEEEEec--CCChHHHHHHHHHhhC-----------------CeEEEeccCCC
Confidence 000 0000112333322221 1233333 3899999988876643 22333333332
Q ss_pred cccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhccCCCCCCceeccCCCCCCcccc
Q 006652 488 DMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKE 565 (637)
Q Consensus 488 ~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~i~V~Tvd~~QG~E~d 565 (637)
...-. ..-.+-..|-+.... +..++..+..+ -|-|..-++.-+..|.+.+.+ -++.+.|.|+.+|+|--
T Consensus 488 ~~~rv---eQ~v~m~~ed~k~kk-L~eil~~~~~p-piIIFvN~kk~~d~lAk~LeK----~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 488 PTPRV---EQKVEMVSEDEKRKK-LIEILESNFDP-PIIIFVNTKKGADALAKILEK----AGYKVTTLHGGKSQEQR 556 (673)
T ss_pred Cccch---heEEEEecchHHHHH-HHHHHHhCCCC-CEEEEEechhhHHHHHHHHhh----ccceEEEeeCCccHHHH
Confidence 11100 001111111122222 22333344333 477777888888888876643 45889999999998743
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.0016 Score=67.24 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
....+++||||||||+.+.+++..++.+|.+|++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 4678999999999999999999999999999988775
No 203
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.94 E-value=0.0021 Score=73.17 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCEEEEecCCCcchH--HHHHHHHhCCeEEEeCCCCC
Q 006652 369 SFDLVIIDEAAQALEI--ACWIALLKGSRCILAGDHLQ 404 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~--~~l~~l~~~~~~vlvGD~~Q 404 (637)
...++||||+..+... ..|.+.....+++++|+...
T Consensus 109 ~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTe 146 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTE 146 (725)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCC
Confidence 4579999999876543 45555566678899987543
No 204
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.94 E-value=0.0055 Score=71.61 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEe
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRL 270 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vri 270 (637)
..|.+-|++||..++. ..-+++..|.|+|||.+- .+-.++ .+..+||++|+.+.+..-..+|...++....+
T Consensus 459 ~sFRp~Q~eaI~aiL~-GrDVLVimPTGSGKSLcY--QLPAL~-~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L 530 (1195)
T PLN03137 459 HSFRPNQREIINATMS-GYDVFVLMPTGGGKSLTY--QLPALI-CPGITLVISPLVSLIQDQIMNLLQANIPAASL 530 (1195)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCccHHHHH--HHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5789999999999997 556899999999999653 222222 35689999999999877777776666655444
No 205
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.93 E-value=0.0032 Score=61.75 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 196 NLDHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
.-|..-.+++...+. ..+..+|.||||||||+++..+..++...+..++.+..++
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 20 GGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 344444555555432 3568999999999999999999988887777777665443
No 206
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.0018 Score=71.69 Aligned_cols=62 Identities=32% Similarity=0.365 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHHHHHHH----ccC-CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHH
Q 006652 192 PFNSNLDHSQKDAISKAL----SSK-NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVD 254 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l----~~~-~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd 254 (637)
.+...||++|+.....++ +.. ++.. .|++|||||...-.++..+-..|+.++.+|.|..|.-
T Consensus 113 ~~~~~l~~eqk~v~d~~~~~v~~~~g~~ff-~g~~gtgKt~l~~t~~~~~~~~g~~~~~v~~s~ia~~ 179 (540)
T KOG0987|consen 113 ELPKKLTPEQKRVYDAILEAVENNLGGVFF-YGFGGTGKTYLLKTLIAALRSRGKIVLNVASSGIAAL 179 (540)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhccccceee-eccCCccceeeHHHHHHHHhcCCceEEEeeecchhhh
Confidence 345789999998776333 223 3455 9999999999999999999888999999999887763
No 207
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.01 Score=61.89 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=42.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec-c--chHHHHHHHHHhcCCCceEEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-A--SNIAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~--tn~Avd~l~~rL~~~~~~~vr 269 (637)
.+.+..|-=|+|||||+..++.++.+.++++|++| - --+|.+.+..--.+.++++..
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 35778999999999999999999999998887664 3 345777766554444555543
No 208
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.93 E-value=0.0023 Score=61.25 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=35.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe-ccchHHHHHHHHHhcCC-CceEEEeCCCCCcChhHHHhhHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC-AASNIAVDNIVERLVPH-RVRLVRLGHPARLLPQVLESALDA 287 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~-a~tn~Avd~l~~rL~~~-~~~~vrig~~~~~~~~~~~~~l~~ 287 (637)
+.++.+||||+||||.+ .+|+.-+ +..+-.+ ++.-.-+..+..-+... ...++-+.--+++.....+..+..
T Consensus 51 ~h~lf~GPPG~GKTTLA-~IIA~e~--~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~Llpa 124 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA-RIIANEL--GVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPA 124 (233)
T ss_dssp -EEEEESSTTSSHHHHH-HHHHHHC--T--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHH
T ss_pred ceEEEECCCccchhHHH-HHHHhcc--CCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHH
Confidence 57899999999998654 4554433 3333333 23222122333333332 234666777777777666655544
No 209
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.92 E-value=0.00063 Score=60.29 Aligned_cols=22 Identities=50% Similarity=0.791 Sum_probs=19.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+|+||||||||+++..++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 4899999999999998888775
No 210
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0078 Score=66.54 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=26.6
Q ss_pred HHHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 200 SQKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 200 ~Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.-.+++..++... ...|++||||+||||++..++..+.
T Consensus 23 ~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 23 HVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344555555432 2468999999999998888887764
No 211
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0073 Score=66.21 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
..|++|||||||||++..++..+..
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4599999999999999888877754
No 212
>PRK10436 hypothetical protein; Provisional
Probab=96.91 E-value=0.0016 Score=70.24 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEE
Q 006652 195 SNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKIL 244 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~IL 244 (637)
-.+.+.|.+.+..++. ..++.+|.||.|||||||+.+++..+...+.+|+
T Consensus 200 LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~ 250 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINIC 250 (462)
T ss_pred cCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEE
Confidence 3578889888887765 6789999999999999999988877655554443
No 213
>PRK06851 hypothetical protein; Provisional
Probab=96.90 E-value=0.00091 Score=69.59 Aligned_cols=46 Identities=33% Similarity=0.664 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCe--EEEeccchHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSK--ILACAASNIAVDNIV 257 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~--ILv~a~tn~Avd~l~ 257 (637)
..+++|.|||||||||++..++..+.+.|.. .+.|+..|.++|-+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgvi 77 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVI 77 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEE
Confidence 5789999999999999999999999888876 678899998988774
No 214
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0027 Score=70.46 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=25.9
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+.+..++.+. ..+|++|||||||||++..++..+.
T Consensus 22 ~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 22 TEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33344555432 2468999999999999988887765
No 215
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0075 Score=69.19 Aligned_cols=68 Identities=19% Similarity=0.381 Sum_probs=51.6
Q ss_pred CCCHHHHHHH---HHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 196 NLDHSQKDAI---SKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 196 ~Ln~~Q~~Av---~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..-+.|...+ ..++......+|.+|.|||||.. ++..+......+++|++++.|+..-+.+.++....
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 3456676654 45555556699999999999975 44455555667899999999999999999987654
No 216
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.86 E-value=0.0048 Score=67.09 Aligned_cols=61 Identities=21% Similarity=0.398 Sum_probs=46.8
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH-HHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 203 DAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE-VKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+-+-.++..+.+++|.|.-|+||||-+-..+... .....+|.++=|-..|+-.++.|+...
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHH
Confidence 3344455568999999999999999887766544 222345999999999999999998753
No 217
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0094 Score=67.25 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=27.0
Q ss_pred HHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 201 QKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 201 Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
..+.+..++... ..+|++||||+|||+++..++..+.
T Consensus 26 ~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 26 IVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 344555555532 3568999999999999988887764
No 218
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.86 E-value=0.0018 Score=63.56 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=45.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRV 265 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~ 265 (637)
..+++|.|+||+|||+.+..++...+++|.++++++... ..+.+.+++...+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCC
Confidence 458899999999999999999998888999999998866 57788888766543
No 219
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.85 E-value=0.0025 Score=60.18 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH-----ccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 199 HSQKDAISKAL-----SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 199 ~~Q~~Av~~~l-----~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
++|.+.+...+ .....++|+|+||+|||+++.++...+...+.-++.+
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~ 58 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISI 58 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 35666677666 2356899999999999999999888887774334433
No 220
>PRK04328 hypothetical protein; Provisional
Probab=96.85 E-value=0.0017 Score=64.73 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=42.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
...++|.||||||||+....++...+++|.++++++.....- .+.+.+...+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~-~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPV-QVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHH-HHHHHHHHcC
Confidence 568999999999999999999998889999999999766444 4666655544
No 221
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.85 E-value=0.002 Score=63.60 Aligned_cols=54 Identities=17% Similarity=0.402 Sum_probs=44.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRV 265 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~ 265 (637)
...+++|.||||||||+.+.+++...+++|.++++++..+. .+.+.+++...+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~g~ 77 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESVKI 77 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHCCC
Confidence 35689999999999999999999888889999999998764 4667777666543
No 222
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.83 E-value=0.0018 Score=61.44 Aligned_cols=27 Identities=33% Similarity=0.631 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
-+..+|.|||||||||.+..++..|+-
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 467899999999999999999988874
No 223
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.82 E-value=0.0017 Score=70.92 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 195 SNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
-.++++|.+.+..++. ..++++|.||+|||||||+..++..+...+.+|+.
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiT 275 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILT 275 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEE
Confidence 4578999999888776 46799999999999999998887766544444443
No 224
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.0077 Score=69.81 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=57.1
Q ss_pred CCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
+...|++-|++|+...-. ..-++|.+|-|+|||.+.-..|...+..|+++..++|..+-.......|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 116 YPFELDPFQQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHH
Confidence 567899999999976554 6788999999999999999999999999999999999877666655444
No 225
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.80 E-value=0.0023 Score=68.14 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCe
Q 006652 195 SNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK 242 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ 242 (637)
..+++.|...+..++. .+|+.|+.||-|||||||+-..+..+.....+
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~n 288 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERN 288 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCce
Confidence 3568888888888887 67899999999999999999999888776655
No 226
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0099 Score=64.53 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=25.4
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+.+..++..+ ...|++|||||||||++..++..+.
T Consensus 22 v~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 22 VRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 34444554422 3689999999999998887776653
No 227
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.78 E-value=0.0053 Score=62.55 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCHHHHH---HHHHHHccCCeEEEEcCCCCchHHHHHHH-HHHHHHcCC-----eEEEeccchHHHHHHHHHhcC
Q 006652 197 LDHSQKD---AISKALSSKNVFMLHGPPGTGKTTTVVEI-ILQEVKRGS-----KILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 197 Ln~~Q~~---Av~~~l~~~~~~lI~GpPGTGKT~ti~~~-i~~l~~~~~-----~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.-+.|.+ +|..++...+..+|.+|.|||||..+... +.++...+. +|++++.|+.-.......+.+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3778888 44445556789999999999999765544 445555454 899999999877666555543
No 228
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.78 E-value=0.0053 Score=62.55 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCHHHHH---HHHHHHccCCeEEEEcCCCCchHHHHHHH-HHHHHHcCC-----eEEEeccchHHHHHHHHHhcC
Q 006652 197 LDHSQKD---AISKALSSKNVFMLHGPPGTGKTTTVVEI-ILQEVKRGS-----KILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 197 Ln~~Q~~---Av~~~l~~~~~~lI~GpPGTGKT~ti~~~-i~~l~~~~~-----~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.-+.|.+ +|..++...+..+|.+|.|||||..+... +.++...+. +|++++.|+.-.......+.+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3778888 44445556789999999999999765544 445555454 899999999877666555543
No 229
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0099 Score=65.69 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=26.5
Q ss_pred HHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 203 DAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 203 ~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+.+..++.. ....|++||||+|||+++..++..+.-
T Consensus 26 ~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 26 KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444455432 235789999999999999998888753
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=96.76 E-value=0.0048 Score=60.88 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
...+|+||+|||||+.+.++..++..++.++++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 568899999999999999888888878888887764
No 231
>PRK06921 hypothetical protein; Provisional
Probab=96.76 E-value=0.0023 Score=64.33 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~ 248 (637)
...++++||||||||+.+.+++..++++ |..|+.++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4578999999999999999999999987 888888775
No 232
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.75 E-value=0.0029 Score=60.07 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
..+++.|...+..++.....++|.||+|+||||++..++.. +....+++.+
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~-i~~~~~~i~i 58 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF-IPPDERIITI 58 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh-cCCCCCEEEE
Confidence 45789999999999988889999999999999998776544 4454555443
No 233
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.73 E-value=0.0026 Score=63.89 Aligned_cols=46 Identities=24% Similarity=0.532 Sum_probs=39.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNI 256 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l 256 (637)
...+++|.|+||||||+.+.+.+...++.|.+++.+|......+-+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELL 67 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHH
Confidence 4578999999999999999999999999999999999866555433
No 234
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.034 Score=55.71 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc-ch--HHHHHHHHHhcCCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA-SN--IAVDNIVERLVPHR 264 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~-tn--~Avd~l~~rL~~~~ 264 (637)
.+...+.||+|+||||++..+...+...+.++.+++. +. .++..+.......+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~ 130 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG 130 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC
Confidence 3688999999999999999998888777777876654 32 35555555433333
No 235
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0032 Score=65.39 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
..|+.||||||||+++..++..+.-.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 48999999999999999999988744
No 236
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.67 E-value=0.0036 Score=62.92 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.....++.||||||||+++..+...
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999999998877753
No 237
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.67 E-value=0.016 Score=53.57 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
...|++||+|+||++.+..++..++...
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999887543
No 238
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.66 E-value=0.0024 Score=70.17 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=44.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
....++|.||||||||+.+.+.+...+++|.+++++++ ....+.+..+....|
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 34589999999999999999999999999999999997 555667777765554
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.65 E-value=0.0031 Score=61.10 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
..++.|.||||||||+.+..++......+.++++++..+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 458999999999999999999999888888888887754
No 240
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.65 E-value=0.0017 Score=56.70 Aligned_cols=23 Identities=39% Similarity=0.751 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|||||||||++..+...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998887765
No 241
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.65 E-value=0.005 Score=63.96 Aligned_cols=37 Identities=38% Similarity=0.566 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~ 248 (637)
.++..+.||.|.|||||++.+++... ...++|-++|-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt 241 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT 241 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEe
Confidence 57899999999999999999999887 56678866654
No 242
>PRK08727 hypothetical protein; Validated
Probab=96.65 E-value=0.0027 Score=62.67 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
...+|+||||||||+.+.++...+.+.+.++.+++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 468999999999999999999999988988888764
No 243
>PTZ00293 thymidine kinase; Provisional
Probab=96.64 E-value=0.0093 Score=57.01 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
.+.+|.||-|+|||+-+..++......|++++++-|..
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 47899999999999989999998888999999998853
No 244
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.64 E-value=0.015 Score=64.91 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
...|++||||||||+++..++..+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578899999999999988887764
No 245
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=96.63 E-value=0.012 Score=66.32 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+.|....-..+ .+. +.+.+.|+|||.+++-.+....-.|..|+|+|||..-+....+.+.+
T Consensus 58 ~~vQlig~~~l~--~G~-Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 58 FDVQLIGGIALH--KGK-IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred cchHHhhhhhhc--CCc-eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHH
Confidence 344554443322 343 88999999999876544432334588999999999888877776544
No 246
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.62 E-value=0.0028 Score=61.84 Aligned_cols=37 Identities=30% Similarity=0.558 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..+++|.|+||||||+.+.+++..+...|.++++.+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4578999999999999999999999888989988853
No 247
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.62 E-value=0.0033 Score=70.19 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeE
Q 006652 195 SNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (637)
-.+.+.|.+.+..++. ..++++|.||+|||||||+..++..+.....+|
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i 347 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNI 347 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceE
Confidence 4578898888887766 578999999999999999988887664333343
No 248
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.61 E-value=0.063 Score=59.55 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEeccchHHHHHHHHHhcC
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+.+++-..+. +..+++..|=|.|||+++.-.+..++. .|.+|+++||.-..+.++.+++..
T Consensus 175 ~~~id~~~~~fk-q~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 175 LREIDRIFDEYG-KCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred HHHHHHHHHHHh-hcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 344455555554 679999999999999999877777665 789999999999999998888643
No 249
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.61 E-value=0.0038 Score=59.57 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=37.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH----------cCCeEEEeccchHHHHHHHHHhcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK----------RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~----------~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...+++|.||||+|||+.+..++..+.. .+.+||++..-.. ...+.+|+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 3579999999999999999999999886 5678999988766 5566666643
No 250
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.013 Score=65.61 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+...+.+..++... ...|++||||+|||+++..++..+.-
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 344455566655422 36899999999999999988888753
No 251
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.02 Score=62.73 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 203 DAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 203 ~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+.+..++... ...|++||||||||+++..++..+..
T Consensus 24 ~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 24 KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3444444422 34589999999999999998888753
No 252
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.59 E-value=0.003 Score=62.16 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=39.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...+++|.||||||||+.+..++...+.+|.++++++.-. ..+.+.++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~-~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE-SRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHH
Confidence 3468999999999999999998888888898998887633 33566555433
No 253
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=96.59 E-value=0.017 Score=63.97 Aligned_cols=45 Identities=22% Similarity=0.463 Sum_probs=38.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...+|.|-+|+||||.|..+.. .-.-+++.-|..|+.|+..+|..
T Consensus 60 ~~ylITGtAGaGKStsIq~L~~-----~ldCviTGaT~vAaQNls~~L~~ 104 (818)
T PF02689_consen 60 SVYLITGTAGAGKSTSIQTLAE-----NLDCVITGATVVAAQNLSSKLSR 104 (818)
T ss_pred EEEEEeccCCCCccchHHHHHh-----hhCeEEecchhhhHhHHHHHhcc
Confidence 4789999999999999876554 34789999999999999999973
No 254
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.58 E-value=0.0032 Score=61.75 Aligned_cols=38 Identities=26% Similarity=0.594 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..+++|.||||||||+.+.+++...+..+.++++++.-
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45899999999999999999999998888888888764
No 255
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.0039 Score=61.70 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=26.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
.+|+.||.||-|||||||++++|-++-+..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 579999999999999999999998876543
No 256
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.55 E-value=0.0031 Score=60.48 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEec
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACA 247 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a 247 (637)
+|+.+|.||+||||||++..++..+... +.+|+..-
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 3789999999999999998888777654 34555543
No 257
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.55 E-value=0.0085 Score=67.73 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=43.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 216 MLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 216 lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+..+.||+|||.+..++|...+..|+.+||+.|.-.-+..+.++|.+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~ 211 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRAL 211 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHH
Confidence 345557999999999999999999999999999999999999999764
No 258
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.55 E-value=0.0036 Score=63.93 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..++++-.++|...+...+..+|.||||||||+++..++..+
T Consensus 47 y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHH
Confidence 457888888888888777889999999999999988887765
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.53 E-value=0.0033 Score=64.38 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=32.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
-.+++||||||||+.+.+++..++..|.++.++...
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 588999999999999999999999999888877653
No 260
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.031 Score=58.45 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=28.9
Q ss_pred HHHHHHHHHHccCC---eEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 200 SQKDAISKALSSKN---VFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 200 ~Q~~Av~~~l~~~~---~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.-.+.+..++.... ..+|+||+|+|||+++-.++..++.
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 33444555555332 5899999999999999999888865
No 261
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.52 E-value=0.0045 Score=62.63 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=41.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...+++|.||||+|||+.+.+++..++.. |.+|++++.-. ..+.+..|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~ 79 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLL 79 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHH
Confidence 35699999999999999999999998877 99999998755 3455666654
No 262
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.50 E-value=0.0054 Score=57.76 Aligned_cols=58 Identities=24% Similarity=0.429 Sum_probs=38.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc--chHHHHHHHHHhcCCCceEEEeCCC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA--SNIAVDNIVERLVPHRVRLVRLGHP 273 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~--tn~Avd~l~~rL~~~~~~~vrig~~ 273 (637)
|+++|.|..||||||++.+++. ...++.++.|+.. -...+|. +.+.+.+..++.+.+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~--~~l~~~~~~v~~l~~g 60 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDA--ELLQEDGVPVVELNNG 60 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHH--HHHHTTT-EEEEECTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccch--hhhcccceEEEEecCC
Confidence 5789999999999999999998 6667888887753 2223332 2333446666666553
No 263
>PHA00350 putative assembly protein
Probab=96.50 E-value=0.0074 Score=63.38 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=31.7
Q ss_pred eEEEEcCCCCchHHHHHH-HHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 214 VFMLHGPPGTGKTTTVVE-IILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~-~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
+.+++|.||||||..++. .|...++.|.+| ++--..--.+.+.+++.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V-~TNI~Gl~le~i~~~~~ 50 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKV-ITNIPGLNLDVFEKVFG 50 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHhhcc
Confidence 679999999999998886 677788888644 43222133444544443
No 264
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.0088 Score=66.96 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 199 HSQKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
+...+.+..++... ..+|++||||||||+++..++..+.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 22 EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 33445555555432 3568999999999999988887764
No 265
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.49 E-value=0.039 Score=64.43 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHc---cCCe--EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHH----HHHHhcC
Q 006652 192 PFNSNLDHSQKDAISKALS---SKNV--FMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDN----IVERLVP 262 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~---~~~~--~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~----l~~rL~~ 262 (637)
.|...-++.|..||..+.. +..+ -||+|--|=|||-+++..+-..+..|++|.|++||---+.. +.+|+..
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 4677889999999998876 2222 58999999999999999999999999999999999988864 5555555
Q ss_pred CCceE
Q 006652 263 HRVRL 267 (637)
Q Consensus 263 ~~~~~ 267 (637)
+.+++
T Consensus 670 fPV~I 674 (1139)
T COG1197 670 FPVRI 674 (1139)
T ss_pred CCeeE
Confidence 54443
No 266
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0025 Score=61.95 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+.-|++||-.++. ..-++.|+-.|||||.|..--+.+.+. +...+|+++||+..+-.+.+-+...
T Consensus 51 S~IQqrAi~~Ilk-GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~al 118 (400)
T KOG0328|consen 51 SAIQQRAIPQILK-GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILAL 118 (400)
T ss_pred hHHHhhhhhhhhc-ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHh
Confidence 5578999999998 557889999999999887655555443 3467999999999988888877654
No 267
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.48 E-value=0.0033 Score=63.61 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+.+...+.+..+....+..+|.||+||||||++..++..+-....+|+++--
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 3445555666655557899999999999999998887665544478777654
No 268
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.47 E-value=0.0055 Score=70.09 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=37.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+...+.|+|||.+.+--+...+..|..|+|+|||..-+....+.+.+
T Consensus 98 ~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 98 NIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred ccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHH
Confidence 357889999999987655554455788999999999888877776654
No 269
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.47 E-value=0.0056 Score=62.68 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
..+++|.||||||||+.+.+++....+.|.+++++..-+..-...+++
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~ 102 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARK 102 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHH
Confidence 458999999999999999999999999999998887765444444433
No 270
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.45 E-value=0.0047 Score=61.29 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=39.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHh
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL 260 (637)
..+++|.|+||||||+.+.+++..++.. +.++++++.-.... ++..|+
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~-~~~~r~ 61 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE-QLLQRL 61 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHH-HHHHHH
Confidence 4589999999999999999999999887 99999999865444 445554
No 271
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.02 Score=63.58 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=26.6
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+.+.+++..+ +.+|++||||||||+++..++..+.
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 34455555432 4578899999999999998887775
No 272
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.45 E-value=0.0027 Score=63.87 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
...+++||||||||+++..++..+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999888877654
No 273
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.43 E-value=0.0045 Score=55.62 Aligned_cols=29 Identities=41% Similarity=0.660 Sum_probs=22.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+++.||||||||+++..++..+ +.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i 30 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRI 30 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEE
Confidence 6899999999999988888776 5444433
No 274
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.023 Score=65.76 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=26.0
Q ss_pred HHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 203 DAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 203 ~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
+.+..++.. ...+|++||||+|||+++..+++.|.
T Consensus 25 ~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 25 EPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555542 23578999999999999998888774
No 275
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.43 E-value=0.013 Score=56.99 Aligned_cols=58 Identities=17% Similarity=0.377 Sum_probs=43.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch-HHHHHHHHHhcCCCceEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN-IAVDNIVERLVPHRVRLVRL 270 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn-~Avd~l~~rL~~~~~~~vri 270 (637)
..+|++|++|||||+++.+++..+...|-|++=+.... .....+.+.|.....++|-+
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf 111 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILF 111 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEE
Confidence 47899999999999999999999999998877776655 34556666665554555433
No 276
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.39 E-value=0.0061 Score=52.87 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
...+||||||||.+.--++..+...|
T Consensus 56 lSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred EEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 34899999999999998888888776
No 277
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.39 E-value=0.012 Score=59.92 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRG--SKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...++-|++|+=.++. ..-++..+--|||||-+ +.=++..|+..+ -..||+|||...+-.|.+-+...
T Consensus 82 ~~PT~IQ~~aiP~~L~-g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~L 152 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALG-GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEAL 152 (476)
T ss_pred CCCchhhhhhcchhhC-CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHh
Confidence 4567889999999998 66788899999999964 556777777654 57899999999999998887665
No 278
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.39 E-value=0.0057 Score=50.65 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=30.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.++.|.+|+|||+++..++..+.+.|.+++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 578899999999999999999999999999888
No 279
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0018 Score=67.59 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
=.|+.||||||||+.|++++.+|
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998776
No 280
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=96.37 E-value=0.023 Score=66.90 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHc---cCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCeEEEeccchHHHHHHHHHh
Q 006652 195 SNLDHSQKDAISKALS---SKNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rL 260 (637)
..|=+.|..+|.-.+. ...-.++-=..|.|||..++.++.++... ..++||++|... +.+-..-+
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~Sl-L~nW~~Ei 238 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKST-LGNWMNEI 238 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHH-HHHHHHHH
Confidence 4688999999987653 23345666679999999998888887653 358999999654 34444433
No 281
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.36 E-value=0.0043 Score=68.14 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhcCCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
...++|.||||||||+.+.+.+..-+.+ |+++|++++- ...+++.+.....+
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcC
Confidence 5689999999999999999998876666 8999999985 55677777766654
No 282
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.16 Score=58.55 Aligned_cols=51 Identities=31% Similarity=0.518 Sum_probs=44.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHH---HHHHHhcCCC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVD---NIVERLVPHR 264 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd---~l~~rL~~~~ 264 (637)
.-+|.|-.|||||+.+.+-+...+++|++|..++|+-..-. ++++++...|
T Consensus 3 m~~lyg~~gtgkT~~l~~e~~~~~~~gkpviyIvP~q~sFe~E~~~L~~~~~~g 56 (1108)
T COG3857 3 MQLLYGRAGTGKTEILTEEIQEELEKGKPVIYIVPSQMSFEKEKEILERLRQGG 56 (1108)
T ss_pred eeeehhhccccHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHHhCcccCC
Confidence 35789999999999999999999999999999999887654 7777777666
No 283
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=96.35 E-value=0.022 Score=65.21 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+-|..+.-..+ .+. +.....|+|||-+.+-.+......|..++|+|||..-+....+.+.+
T Consensus 80 ~~vQl~~~~~l~--~G~-Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 80 YDVQLIGALVLH--EGN-IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred chHHHHhHHHHc--CCc-eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHH
Confidence 456655544333 343 89999999999987766655556799999999999888877776544
No 284
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.32 E-value=0.0055 Score=64.09 Aligned_cols=42 Identities=29% Similarity=0.517 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHccCC--eEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 198 DHSQKDAISKALSSKN--VFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~--~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
++...+.+..++.... ..+++||||||||+++..++..+...
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4556666666666443 78999999999999999988877643
No 285
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.32 E-value=0.0042 Score=60.71 Aligned_cols=35 Identities=34% Similarity=0.619 Sum_probs=28.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..=|.||||.||+|.+-+++..+.+.|++|-|+|-
T Consensus 31 ~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAV 65 (266)
T PF03308_consen 31 VIGITGPPGAGKSTLIDALIRELRERGKRVAVLAV 65 (266)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEE
Confidence 34489999999999999999999999999877763
No 286
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.29 E-value=0.058 Score=49.93 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=37.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIA 252 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~A 252 (637)
..++.+|+=++|=||||.+..++...+-.|.+|+|+=|=..+
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~ 68 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGG 68 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecC
Confidence 568999999999999999999999999999999999775544
No 287
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.29 E-value=0.0064 Score=47.31 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=22.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
..|.|+||+||||.+..+...+ .+.++.++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 5689999999999988888777 44444444
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.0057 Score=64.48 Aligned_cols=36 Identities=25% Similarity=0.525 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH-HHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE-VKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~~ILv~a~ 248 (637)
.++++.||+|+||||+++.++..+ ...|.+|++++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 467899999999999999999866 567888876654
No 289
>PHA00729 NTP-binding motif containing protein
Probab=96.28 E-value=0.0054 Score=59.28 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
..+|.|+|||||||.+..++..+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999888764
No 290
>PRK06851 hypothetical protein; Provisional
Probab=96.28 E-value=0.0054 Score=63.89 Aligned_cols=44 Identities=34% Similarity=0.559 Sum_probs=35.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE--eccchHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA--CAASNIAVDN 255 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv--~a~tn~Avd~ 255 (637)
....+|.|||||||||++..++..+.++|.+|.+ |+.-+..+|.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD~ 259 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDM 259 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcce
Confidence 4689999999999999999999999999988765 3444444443
No 291
>PF05729 NACHT: NACHT domain
Probab=96.27 E-value=0.0044 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
+.+|.|+||+|||+++..++..+...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 689999999999999999998887764
No 292
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.25 E-value=0.0087 Score=61.38 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=38.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
..++.|.||||||||+.+.+++....+.|.+++++.+-+..-...+++
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~ 102 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKK 102 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHH
Confidence 458999999999999999999999988998999888765544433333
No 293
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.026 Score=53.73 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=28.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH-----cCCeEEEeccch
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVK-----RGSKILACAASN 250 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~-----~~~~ILv~a~tn 250 (637)
.++|.||||+||||.+-.++..+.. .+++|.++--++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers 180 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS 180 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc
Confidence 4899999999999999988876643 256777766555
No 294
>PRK13768 GTPase; Provisional
Probab=96.22 E-value=0.0058 Score=61.02 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.++|.||+|+||||++..++..+...|.+|+++..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 67899999999999999999999889999988753
No 295
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.21 E-value=0.0034 Score=56.58 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
++++.|||||||||.+..+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998776644
No 296
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.028 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
...|++||+|+|||+++..++..+.-
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 35789999999999999999988763
No 297
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.20 E-value=0.011 Score=61.92 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEe
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILAC 246 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~ 246 (637)
.|.++..+.+ +...+.++|.||+||||||++..++.++... +.+|+.+
T Consensus 136 gl~~~~~~~l---~~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 136 GIEPDLFNSL---LPAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCCHHHHHHH---HhcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 3555544433 3357899999999999999999998887653 3455543
No 298
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.032 Score=59.29 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
-.|++||||+|||+++..++..+.-
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4789999999999999988877653
No 299
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.19 E-value=0.0043 Score=57.72 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=37.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
+++|.||||||||+.+..++.. .+.++++++-....-+++.+|+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHH
Confidence 4689999999999998888754 677888888777667778888654
No 300
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.19 E-value=0.0043 Score=63.07 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
..++.||||||||+++..++..+...|
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 588999999999999988888777654
No 301
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.18 E-value=0.0075 Score=54.24 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
++..|.||.||||||.+..++.+|.++|.++.++-.++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 46789999999999999999999999999988776543
No 302
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.18 E-value=0.0091 Score=63.99 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHc------cCCeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 199 HSQKDAISKALS------SKNVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 199 ~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
+.|.+.+...+. ..+..+|+||||||||+++..++..+...+
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 445555555542 235689999999999999999988876554
No 303
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.18 E-value=0.057 Score=60.86 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHh
Q 006652 195 SNLDHSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERL 260 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL 260 (637)
..+++.|.+++..... .....+|.+.=|=|||..+--.+..+...+ .+|+|+|||-.+++.+.+-+
T Consensus 210 l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 210 LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHH
Confidence 4678899887764433 234889999999999988764443333334 49999999999999988764
No 304
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0064 Score=54.64 Aligned_cols=29 Identities=38% Similarity=0.654 Sum_probs=25.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeE
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (637)
..|.||||+||||.+..++..|-..|-+|
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 57999999999999999998888777555
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.13 E-value=0.008 Score=63.88 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
..+...+.+..++...+..++.||||||||+++..+...+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 45666666777777788999999999999999887766654
No 306
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0051 Score=57.42 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
++.++.|+||+||||.+.+++..|-+.+.++..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 47889999999999999999998887776665443
No 307
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.11 E-value=0.021 Score=66.95 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=22.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
..+..++.||||+|||+++-.++..+..
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 3457889999999999999877777653
No 308
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.023 Score=64.53 Aligned_cols=45 Identities=31% Similarity=0.491 Sum_probs=32.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH-HcC-CeEEEecc-chH--HHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV-KRG-SKILACAA-SNI--AVDNIV 257 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~-~~~-~~ILv~a~-tn~--Avd~l~ 257 (637)
.++.+.||.|+|||||+..+...+. ..| ++|.+++. |-. |++.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~ 235 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLR 235 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHH
Confidence 4789999999999999999998874 455 57765543 333 444443
No 309
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.08 E-value=0.0084 Score=66.48 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=44.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
...+++|.||||||||+.+..++...+..|.+++++++... .+.+.+++...|
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~-~~~i~~~~~~~g 324 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES-RAQLIRNARSWG 324 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC-HHHHHHHHHHcC
Confidence 35688999999999999999999999999999999998765 666777765544
No 310
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.08 E-value=0.0089 Score=54.79 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=31.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..|.|++||||||++..++..+...|.+|.++-+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 56889999999999999999998889999888764
No 311
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.03 E-value=0.01 Score=64.34 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++|.|+||+|||+.+..++..+.+.+.++++++.-. ..+.+..|..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHHHHHc
Confidence 458999999999999999999999888899999988654 345666554433
No 312
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.02 E-value=0.0058 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+|.|+|||||||++.++...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999888886
No 313
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.01 E-value=0.009 Score=56.76 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHH
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
+.-++|+.-+.......++.||||||||+.+..+.
T Consensus 9 e~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~ 43 (206)
T PF01078_consen 9 EEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLP 43 (206)
T ss_dssp HHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHH
Confidence 45567777666656789999999999997765544
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.01 E-value=0.011 Score=62.25 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++|.|+||+|||+.+..++..+...+.+|++++.... .+.+..|..+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHH
Confidence 4689999999999999999999999888889999876543 4556655443
No 315
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.0054 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...|.|||||||||+...++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 35699999999999988777654
No 316
>CHL00181 cbbX CbbX; Provisional
Probab=96.01 E-value=0.0064 Score=61.84 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
..++.||||||||+++..++..+...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999888777654
No 317
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.00 E-value=0.0066 Score=56.43 Aligned_cols=29 Identities=38% Similarity=0.721 Sum_probs=23.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeE
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (637)
.+|.|+||+||||.+..++..+-+.+.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 57999999999999999998887665443
No 318
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.97 E-value=0.01 Score=60.89 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..++.|.||||+||||++..++..+...|.+|.+++.
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~ 70 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAV 70 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4577899999999999999999999989999988763
No 319
>PRK09354 recA recombinase A; Provisional
Probab=95.97 E-value=0.014 Score=60.41 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
..++.|.||||||||+.+.+++....+.|.+++++..-+..-...+++
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~ 107 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKK 107 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHH
Confidence 458999999999999999999999989999998888766554444433
No 320
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.95 E-value=0.011 Score=53.66 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..+.|++|+||||++..++..+...+.+++++...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 46789999999999999999999999999887643
No 321
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.92 E-value=0.034 Score=65.31 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+.+++.||||||||+++..+...+...+..++.+.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id 633 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID 633 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE
Confidence 36899999999999999888877765555554443
No 322
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.04 Score=56.69 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCCEEEEecCCCcchHHH--HHHHH----hCCeEEEeCC-CCCCCccccCH
Q 006652 369 SFDLVIIDEAAQALEIAC--WIALL----KGSRCILAGD-HLQLPPTVQSV 412 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~~~--l~~l~----~~~~~vlvGD-~~QL~p~v~s~ 412 (637)
.+.+||||+|..+++... |.-.+ ....+||+.+ +.+|.||+.|.
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 679999999988877532 33232 1256888887 68899998774
No 323
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.046 Score=56.89 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
...+++||||+|||+++..++..++-
T Consensus 29 ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 46799999999999999998888753
No 324
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.87 E-value=0.038 Score=64.75 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=26.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+++.||||+|||.++..++..+......+..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 5799999999999999999888765555444443
No 325
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.87 E-value=0.016 Score=51.29 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=28.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
...+.++.|+.|+||||.+..++..+- ..--|.+||=
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg---~~~~v~SPTf 57 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG---IQGNVTSPTF 57 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC---CCCcccCCCe
Confidence 456899999999999999988887752 2224777773
No 326
>PF12846 AAA_10: AAA-like domain
Probab=95.85 E-value=0.024 Score=58.05 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~ 272 (637)
++.++|.|++|+|||+++..++.+++..|..+++.=+...-.. +++. .+..++.++.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~-~~~~---~~~~~i~~~~ 57 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP-LARA---LGGQYIDIDP 57 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH-HHHh---cCceEEEeec
Confidence 3578999999999999999999999999999999988765555 3222 4556665443
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.84 E-value=0.019 Score=57.00 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+.=|.|+||.||+|.+-+++..+...|.+|-|+|
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA 86 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLA 86 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE
Confidence 5559999999999999999999999999988876
No 328
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=95.81 E-value=0.18 Score=53.30 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHH------cCCeEEEeccchHHHHHHHHHh
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVK------RGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~------~~~~ILv~a~tn~Avd~l~~rL 260 (637)
..+++-|.+.+.-.+. ..-++..+--|||||.. +.-.+..+++ ++-.++|||||..-+-.+..-+
T Consensus 103 ~~MT~VQ~~ti~pll~-gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~ea 174 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLE-GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEA 174 (543)
T ss_pred cchhHHHHhhcCccCC-CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHH
Confidence 5689999999988887 44688999999999974 4444444443 3578999999998776665443
No 329
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.80 E-value=0.015 Score=60.40 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=34.4
Q ss_pred HHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 200 SQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 200 ~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.....+..+.......+|.||+||||||++.+++.. +....+|+++
T Consensus 148 ~~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~-ip~~~ri~ti 193 (332)
T PRK13900 148 KIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALRE-IPAIERLITV 193 (332)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhh-CCCCCeEEEe
Confidence 345566666667889999999999999999877654 4456677654
No 330
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.80 E-value=0.017 Score=62.54 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=32.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
...+|+||||+|||+.+.++...+...+.+|+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 467899999999999999999998888889888875
No 331
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.80 E-value=0.013 Score=60.44 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=31.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+.-|.||||+||||++..++..+...|.+|.|++-
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 56699999999999999999999888988888765
No 332
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.79 E-value=0.021 Score=60.63 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHH-HHHHHHHHHHHc------------CCeEEEeccchHHHHHHHHHhc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTT-TVVEIILQEVKR------------GSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~-ti~~~i~~l~~~------------~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...++-|+-++..+.. ..=.++.|+-|+|||. -+.=++.++.+. .-+.|++|||+..|+.+.++-.
T Consensus 95 ~~ptpvQk~sip~i~~-Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~ 173 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISG-GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR 173 (482)
T ss_pred cCCCcceeeccceeec-CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH
Confidence 4568888888877665 4456899999999998 466677777654 2589999999999999998866
Q ss_pred CC
Q 006652 262 PH 263 (637)
Q Consensus 262 ~~ 263 (637)
+.
T Consensus 174 k~ 175 (482)
T KOG0335|consen 174 KF 175 (482)
T ss_pred hh
Confidence 54
No 333
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.78 E-value=0.074 Score=58.77 Aligned_cols=50 Identities=26% Similarity=0.240 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEeccchHHHHHHHHHhc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
+..+++.-|==.|||+.++.+|..++ ..|.+|+++|+....++.+.+++.
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~ 305 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIG 305 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHH
Confidence 56788999999999999997777666 369999999999999988888764
No 334
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.78 E-value=0.036 Score=59.77 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHH--------cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVK--------RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~--------~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...++-|....-.++.-. -.+..+--|||||-. +.=.|.++.. .+.++||++||...+..+.+-..++
T Consensus 112 ~~PtpIQaq~wp~~l~Gr-D~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALSGR-DLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCCchhhhcccceeccCC-ceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 356777888887777733 455667799999963 4444555543 1578999999999999888776654
No 335
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.77 E-value=0.013 Score=66.30 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHc-------cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALS-------SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~-------~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
=++|.+.|..++. ...+++|.|+||||||.|+..++..|..
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3666666666665 1124569999999999999998877743
No 336
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.76 E-value=0.014 Score=61.18 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=28.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEec
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACA 247 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a 247 (637)
..++.+|.||+|+||||++..++..+... +.+|+.+-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 46899999999999999999888776543 45555543
No 337
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.75 E-value=0.013 Score=62.38 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.-++++||||||||+++.+++..
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHH
Confidence 34889999999999988777654
No 338
>KOG4284 consensus DEAD box protein [Transcription]
Probab=95.74 E-value=0.0061 Score=65.72 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCeEEEeccchHHHHHHHHHhcCC
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
++-|..||-.++. .--.+||+-.|||||-+-+-++..-+.. .-.+++++||+.-+-.|.+-+.+.
T Consensus 49 tkiQaaAIP~~~~-kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v 116 (980)
T KOG4284|consen 49 TKIQAAAIPAIFS-KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKV 116 (980)
T ss_pred Cchhhhhhhhhhc-ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHh
Confidence 5678889988776 4457899999999997655444433322 357899999999888887766544
No 339
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.74 E-value=0.013 Score=60.40 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+..+++||||||||+.+..++..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999988776543
No 340
>PRK13764 ATPase; Provisional
Probab=95.74 E-value=0.018 Score=63.87 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.0
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEE
Q 006652 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKIL 244 (637)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~IL 244 (637)
......+|.|||||||||++.+++..+...+..|+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~ 289 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVK 289 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEE
Confidence 34577999999999999999998888776554443
No 341
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.72 E-value=0.039 Score=59.37 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~ 248 (637)
...+|+||||||||+.+.++...+.+. +.+++.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 367899999999999999998888765 677777754
No 342
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.72 E-value=0.017 Score=62.71 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=40.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...+++|.|+||+||||.+..++..+.+.+.++|+++.-.. .+.+..|..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~r 143 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIR 143 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHH
Confidence 34589999999999999999999999888889998887543 4556555443
No 343
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.71 E-value=0.012 Score=57.49 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
-.+|.||+|||||+.+..++..+.+.-..|.++|+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 56799999999999999999888777778888877
No 344
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.089 Score=54.21 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
+..|++||+|+||++++..++..++-.+
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5789999999999999999998887543
No 345
>PHA02244 ATPase-like protein
Probab=95.68 E-value=0.016 Score=59.99 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=25.8
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 203 DAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..+..++.....++|.||||||||+.+.++...
T Consensus 110 ~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 110 ADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 345556666677899999999999998877765
No 346
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.68 E-value=0.025 Score=58.56 Aligned_cols=49 Identities=24% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 197 LDHSQKDAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.+++..+.+...+.. ....+++||||||||+.+..+..++ +..++.+.+
T Consensus 25 ~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~ 76 (316)
T PHA02544 25 LPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNG 76 (316)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEecc
Confidence 455656666655542 2366679999999999988776654 334444443
No 347
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.68 E-value=0.068 Score=62.99 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
....++.||||+|||+++-.++..+..
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 457789999999999999877776654
No 348
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.67 E-value=0.033 Score=67.87 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=34.9
Q ss_pred EEcCCCCchHHHHHH-HHHHHHHc------------CCeEEEeccchHHHHHHHHHhc
Q 006652 217 LHGPPGTGKTTTVVE-IILQEVKR------------GSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 217 I~GpPGTGKT~ti~~-~i~~l~~~------------~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
|.+|.|||||.+..- ++..++.. +.++|+++|+.+-+..+.++|.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~ 58 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQ 58 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHH
Confidence 578999999987654 55566532 4689999999999988887764
No 349
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.65 E-value=0.0092 Score=56.79 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=26.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
-+|.||||+||||-...+-.-+-..|.++.++
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV 36 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV 36 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEE
Confidence 47999999999999888877777777766654
No 350
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.64 E-value=0.013 Score=58.97 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=35.3
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 204 AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
-+...+..+..+++.||||||||.++...+..+-.....+..+.+|-.......+++.+
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie 83 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIE 83 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCC
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHh
Confidence 34455556778999999999999999887765433222344444443333333444444
No 351
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.64 E-value=0.037 Score=60.35 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~t 249 (637)
+..+|+||||||||+.+.++...+.+. +.+++.++..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 468999999999999999999888876 6677766543
No 352
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.64 E-value=0.55 Score=43.65 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=47.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch----HHHHHHHHHhcCCCceEEEeCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN----IAVDNIVERLVPHRVRLVRLGHP 273 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn----~Avd~l~~rL~~~~~~~vrig~~ 273 (637)
.++.+.|.=++|=||||.+...+.+.+-.|.+|+++=|=. ..-+.+.+++. ++.+.+.|..
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~--~v~~~~~g~~ 84 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQ--NLDWVRCDLP 84 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCC--CcEEEECCCC
Confidence 4789999999999999999999999999999999986632 34455555543 5677776653
No 353
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.63 E-value=0.079 Score=61.41 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
....++.||||||||+++-.++..++..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3467899999999999988888777653
No 354
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.63 E-value=0.019 Score=53.90 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
..+.++.|+|||||||++..+...+...+..+.++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 34788999999999999988888887666666555
No 355
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.016 Score=60.78 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHc------cCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 198 DHSQKDAISKALS------SKNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 198 n~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
=++|.+.+..++. .+...+|.||||||||.|+..+..++...
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 4567666666664 23458999999999999999999888765
No 356
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.62 E-value=0.015 Score=60.69 Aligned_cols=24 Identities=42% Similarity=0.564 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+..+|+||||||||+++..++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 478999999999999998776654
No 357
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=0.13 Score=54.27 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=28.3
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+.+..++... .-.|++||+|+||++++..++..++-
T Consensus 28 ~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 28 EAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 34455555532 35889999999999999999998874
No 358
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.60 E-value=0.0095 Score=58.77 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=22.2
Q ss_pred EEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 217 LHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 217 I~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
|.|||||||||....+...+...+.++.++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV 30 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE
Confidence 689999999998888888776667666555
No 359
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.60 E-value=0.02 Score=59.96 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
..++++|.||.||||||++..++..+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999998887754
No 360
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.60 E-value=0.019 Score=53.84 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+.+|.|+||+||||++..+...+...+..+.++
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4778999999999999999998887777677655
No 361
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.59 E-value=0.015 Score=56.93 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=32.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcC------CeEEEeccch
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG------SKILACAASN 250 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~------~~ILv~a~tn 250 (637)
...++.|.||||+|||+.+..++...+.++ .+++.++..+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 356899999999999999999988877666 6776666543
No 362
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.57 E-value=0.0096 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|||||||||.+..++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999999888776543
No 363
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.56 E-value=0.13 Score=54.56 Aligned_cols=64 Identities=23% Similarity=0.461 Sum_probs=46.8
Q ss_pred CCHHHHHH---HHHHHccCCeEEEEcCCCCchHHHHHHHHHHH-HHc---CCeEEEeccchHHHHHHHHHh
Q 006652 197 LDHSQKDA---ISKALSSKNVFMLHGPPGTGKTTTVVEIILQE-VKR---GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 197 Ln~~Q~~A---v~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~---~~~ILv~a~tn~Avd~l~~rL 260 (637)
.=++|-.. ++++|.+.|..++.-|.|||||..+..++... ++- ..+++.|+.|-.-++...+.|
T Consensus 17 iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 17 IYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 34566543 66778889999999999999999887766544 332 468999999976665555444
No 364
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.55 E-value=0.041 Score=55.36 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHccCC--eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCC
Q 006652 198 DHSQKDAISKALSSKN--VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~--~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~ 272 (637)
|+......+.-+...+ ++-|.|+||+||||++..++..+... .++.|+.---... +=.+++...+..++.+.+
T Consensus 88 n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~-~Da~rI~~~g~pvvqi~t 162 (290)
T PRK10463 88 NNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTV-NDAARIRATGTPAIQVNT 162 (290)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcH-HHHHHHHhcCCcEEEecC
Confidence 4444444544444333 44589999999999999998887544 3555553222222 124566666777766644
No 365
>PRK07667 uridine kinase; Provisional
Probab=95.55 E-value=0.021 Score=54.50 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=30.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
++.|.|+|||||||++..+...+-..|.++.++..-+
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 6679999999999999888888877777776666544
No 366
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.55 E-value=0.027 Score=60.99 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=29.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~ 248 (637)
..+|+||||||||+.+.++...+.+. +.+|++++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 58999999999999999998888764 567887764
No 367
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.54 E-value=0.022 Score=49.39 Aligned_cols=44 Identities=32% Similarity=0.456 Sum_probs=34.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
.++.|.+|+|||++...++..+.+.+.+|+++---. +.+.+++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~---~~~~~~~~ 45 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP---DDLPERLS 45 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc---hhhHHHHh
Confidence 578999999999999999999988888887655332 45555443
No 368
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.53 E-value=0.02 Score=53.20 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
.+++.|.|++||||||.+..++..+...|.+|-++-++.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 357889999999999999999999887788887776543
No 369
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.53 E-value=0.014 Score=54.38 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=36.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc---chHHHHHHHHHhcCCCceEEEeC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA---SNIAVDNIVERLVPHRVRLVRLG 271 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~---tn~Avd~l~~rL~~~~~~~vrig 271 (637)
..-|-||||||||+.+-..+..|..+ .++.|++. |+.=++.+.+. .+.+++-+.
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~ 71 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVE 71 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEec
Confidence 44589999999999999999888776 77777753 44333333332 555555443
No 370
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.52 E-value=0.017 Score=64.06 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=42.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhcCCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
...+++|.|+||||||+.+.+.+...+.+ |.++|+++... ..+++.+++...+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee-~~~~i~~~~~~~g 83 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE-SPEDIIRNVASFG 83 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC-CHHHHHHHHHHcC
Confidence 35689999999999999999999887777 99999998765 5556666666554
No 371
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.51 E-value=0.017 Score=57.67 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=27.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+.++.|+|||||||.+..+...+-..+.++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 468999999999999999998887666666555
No 372
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.51 E-value=0.012 Score=54.82 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=34.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+|.||||||||+.+..++..+ +.+++.++.....-+++.+|+..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHH
Confidence 57999999999999987776542 456667766556666777776443
No 373
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.48 E-value=0.012 Score=50.15 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHc
Q 006652 216 MLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 216 lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
.|.||||+|||+.+..++..+.+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999988887643
No 374
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.019 Score=62.41 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=25.7
Q ss_pred HHHHHHHHccCC---eEEEEcCCCCchHHHHHHHHHHHH
Q 006652 202 KDAISKALSSKN---VFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 202 ~~Av~~~l~~~~---~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
...+..++.... ..+++|||||||||++..++..+.
T Consensus 23 ~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 23 KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555554332 368999999999999888877664
No 375
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.019 Score=58.35 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=16.7
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
=+|++||||||||-.+.+.+.
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~ 207 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVAN 207 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHh
Confidence 478999999999977665553
No 376
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.46 E-value=0.019 Score=61.58 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 204 AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+..++.+.+.++|.||||||||+++..+.....
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 3334444689999999999999998877776543
No 377
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.45 E-value=0.013 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
-++++|.|||||||||++..++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999988777654
No 378
>PRK06762 hypothetical protein; Provisional
Probab=95.43 E-value=0.026 Score=52.34 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
.+.+|.|+|||||||.+..+...+ +..+.++. .|.+...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~-----~D~~r~~l 42 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVS-----QDVVRRDM 42 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEec-----HHHHHHHh
Confidence 478899999999999888777665 33454443 26665543
No 379
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.42 E-value=0.02 Score=43.15 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+.++|.||.|+||||++-++...|..
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 38999999999999888777666553
No 380
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.42 E-value=0.05 Score=57.90 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 199 HSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 199 ~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
-.|-+||..... ....-.+.|.-|||||.|++..|.. -+...||+||+...+..+..-+.+.
T Consensus 15 GDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~---~~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 15 GDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAK---VQRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred CCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHH---hCCCeEEEecchhHHHHHHHHHHHh
Confidence 456677776654 2346789999999999999999876 3678899999999999999888765
No 381
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.41 E-value=0.02 Score=60.57 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
-.+++||||||||+++..++..+
T Consensus 158 gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999888776553
No 382
>PRK08118 topology modulation protein; Reviewed
Probab=95.40 E-value=0.013 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
-.+|.||||+||||.+..+...+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999998777666543
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.38 E-value=0.021 Score=53.72 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=27.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+..|.|+|||||||.+..++..+-..|.++.+++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~ 35 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISL 35 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEeh
Confidence 35799999999999998888777666666665543
No 384
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.38 E-value=0.023 Score=58.81 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHc-------cCCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 196 NLDHSQKDAISKALS-------SKNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~-------~~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
++++...+.|..... .+.+.++.|||||||||.+-.++..+-
T Consensus 55 G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 55 GMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345555555543322 246889999999999998887776663
No 385
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=95.37 E-value=0.021 Score=60.75 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHc------CCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKR------GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~------~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++-|++.|-.+|.- .-++=.+-.|||||-. ++-.+..|... |-..||++||+..+-.+.+-|.+
T Consensus 90 v~~teiQ~~~Ip~aL~G-~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k 163 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQG-HDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK 163 (758)
T ss_pred ccHHHHHHhhcchhccC-cccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH
Confidence 46799999999999983 3345556679999974 55566666543 57899999999999888887755
No 386
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.37 E-value=0.025 Score=53.99 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=29.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+.+|.|+||+||||.+..+...+-..|.+++++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36789999999999999998888877787776553
No 387
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.33 E-value=0.075 Score=61.14 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+++.||||||||+++..++..+
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999998776655
No 388
>PRK06696 uridine kinase; Validated
Probab=95.31 E-value=0.025 Score=55.33 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=28.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
-++.|.|+|||||||++..++..|-..|..+++++
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 36779999999999999888888766676666655
No 389
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.015 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i 233 (637)
.+..||.|-|||||||+...++
T Consensus 7 ~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHH
Confidence 5789999999999999877665
No 390
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.30 E-value=0.024 Score=58.98 Aligned_cols=50 Identities=18% Similarity=0.372 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+.+....+..+.......+|.||+||||||++..++.. +....+++.+=.
T Consensus 148 ~~~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~-i~~~~rivtiEd 197 (344)
T PRK13851 148 NGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISA-IPPQERLITIED 197 (344)
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcc-cCCCCCEEEECC
Confidence 45556667777767889999999999999999887655 344566665433
No 391
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.29 E-value=0.022 Score=62.19 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.-.+++||||||||+++..++..+.
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhc
Confidence 3589999999999998888877664
No 392
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=95.29 E-value=0.12 Score=60.25 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKR-GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...|=..|.+|.+.+.+ ...++|.-|.|||||-+ +.-++.++++. ..+-|++-|||+-+..=.+||.+.
T Consensus 68 ~~~lY~HQ~~A~~~~~~-G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~ 138 (851)
T COG1205 68 IERLYSHQVDALRLIRE-GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLREL 138 (851)
T ss_pred cccccHHHHHHHHHHHC-CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHH
Confidence 34588999999998876 56889999999999975 55666666664 357899999999998888888764
No 393
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.28 E-value=0.0092 Score=51.96 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=22.8
Q ss_pred CEEEEecCCCcchHHHHHHHH---hCCeEEEeCCCCCCCc
Q 006652 371 DLVIIDEAAQALEIACWIALL---KGSRCILAGDHLQLPP 407 (637)
Q Consensus 371 d~vIIDEA~q~~e~~~l~~l~---~~~~~vlvGD~~QL~p 407 (637)
.++++||...+.. ....+++ ...++-+-|....||.
T Consensus 64 ~ill~DEiNrapp-ktQsAlLeam~Er~Vt~~g~~~~lp~ 102 (131)
T PF07726_consen 64 NILLADEINRAPP-KTQSALLEAMEERQVTIDGQTYPLPD 102 (131)
T ss_dssp SEEEEETGGGS-H-HHHHHHHHHHHHSEEEETTEEEE--S
T ss_pred ceeeecccccCCH-HHHHHHHHHHHcCeEEeCCEEEECCC
Confidence 6999999987643 3333333 3477888888888876
No 394
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.28 E-value=0.052 Score=63.90 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
+.+++.||||||||+++..+...+...+..++.+-.+.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSE 633 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 35889999999999999999888776666666655443
No 395
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=95.25 E-value=0.028 Score=54.72 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=33.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI 251 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~ 251 (637)
+.-|.|++|+||||++..++..|..+|.+|.++-+++.
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~~ 40 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTHH 40 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 56799999999999999999999999999999976554
No 396
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.24 E-value=0.025 Score=56.93 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=31.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
+..|.|++||||||++..++..|.++| +|.++=...
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 567999999999999999999999999 787776543
No 397
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.23 E-value=0.024 Score=60.25 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.-++++||||||||+++..++..
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999988776644
No 398
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.23 E-value=0.025 Score=56.77 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
++.+|.|.|||||||.+.++...+-..+.+|.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47899999999999999888888888777777776
No 399
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.22 E-value=0.027 Score=60.50 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.-++++||||||||+++..++..+
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999988777653
No 400
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.22 E-value=0.035 Score=51.05 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=31.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
+..|.|++||||||++..++..+...|.+|-++-+.+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~ 39 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH 39 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5779999999999999999999888888887765543
No 401
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.22 E-value=0.027 Score=51.27 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+++|.|+|||||||.+..+...+...+.+++++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i 33 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 367999999999999988888877667555443
No 402
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.22 E-value=0.026 Score=61.91 Aligned_cols=25 Identities=44% Similarity=0.690 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.++.||||+|||||+..++..+
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999997777665
No 403
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.21 E-value=0.21 Score=52.44 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-Hc-----CC--eEEEeccchHHHHHHHHHh
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-KR-----GS--KILACAASNIAVDNIVERL 260 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~-----~~--~ILv~a~tn~Avd~l~~rL 260 (637)
...++-|..+|-..+. +.=+++.+|-|||||-.-+-=+...+ .+ +. .-||+|||...+..|.+-+
T Consensus 27 ~~mTpVQa~tIPlll~-~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~ 99 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK-NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVA 99 (567)
T ss_pred cccCHHHHhhhHHHhc-CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHH
Confidence 4679999999998887 55677999999999976443333333 21 23 5689999998887777654
No 404
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.19 E-value=0.031 Score=57.93 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcc--CCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 199 HSQKDAISKALSS--KNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 199 ~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
+++.+.+...+.. .+..+++||||||||+++..++..+...
T Consensus 23 ~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 23 EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4556666666552 2457999999999999998888776543
No 405
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.18 E-value=0.029 Score=58.50 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHH
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIA 252 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~A 252 (637)
.++...++..++...+.+++.||||||||+.+..++..+- .+-..+-|++.-..
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~-~~~~~i~~t~~l~p 82 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALG-LPFVRIQCTPDLLP 82 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhC-CCeEEEecCCCCCH
Confidence 4445555555555789999999999999988777766544 33333444443333
No 406
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.23 Score=51.24 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 196 NLDHSQKDAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.|++..+. +..++.. ..-.+++||+|+||++++..++..++-
T Consensus 6 W~~~~~~~-l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 6 WLQPTYQQ-ITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred chHHHHHH-HHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 34444444 3444442 246789999999999999999988864
No 407
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.18 E-value=0.092 Score=60.85 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+++.||||||||+++..+...+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 57999999999999888887665
No 408
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.18 Score=52.42 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCCCEEEEecCCCcchHHH--HHHHH----hCCeEEEeCC-CCCCCccccCH
Q 006652 368 TSFDLVIIDEAAQALEIAC--WIALL----KGSRCILAGD-HLQLPPTVQSV 412 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~~--l~~l~----~~~~~vlvGD-~~QL~p~v~s~ 412 (637)
..+.++|||+|..+++... |.-.+ ....+||+.. +.+|+||+.|.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR 182 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR 182 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc
Confidence 4679999999988876532 22222 1255676665 58899998774
No 409
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.14 E-value=0.027 Score=60.89 Aligned_cols=35 Identities=43% Similarity=0.668 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH-HcC-CeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV-KRG-SKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~-~~~-~~ILv~a 247 (637)
.++.+.||.|+|||||+..++..+. +.| .+|.+++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 5788999999999999999998885 444 4676554
No 410
>PRK08233 hypothetical protein; Provisional
Probab=95.09 E-value=0.016 Score=54.54 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+..|.|+|||||||.+..++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999987777664
No 411
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.026 Score=59.61 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
..+++|||||||||++..++..+.
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhc
Confidence 468999999999999988887764
No 412
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.017 Score=52.70 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=15.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
..+|.|.|||||||+.-.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 47899999999998765433
No 413
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.07 E-value=0.039 Score=50.22 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=29.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+..+.|.|||||||++.++...|...|.++.++--
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 56799999999999999999999888888877753
No 414
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.07 E-value=0.017 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
+.+|.|+||+||||++..+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999998877655
No 415
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.06 E-value=0.076 Score=61.85 Aligned_cols=76 Identities=32% Similarity=0.447 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC-----------CeEEEeccchHHHHHHHH----H
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-----------SKILACAASNIAVDNIVE----R 259 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-----------~~ILv~a~tn~Avd~l~~----r 259 (637)
..||..|.+.-..++......+++||.|+|||-+++--|.+-+..+ -+|...||..+.|+++.. |
T Consensus 308 ~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkR 387 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKR 387 (1674)
T ss_pred hhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhh
Confidence 4699999999999999888999999999999998877666665432 489999999999988876 5
Q ss_pred hcCCCceEEEe
Q 006652 260 LVPHRVRLVRL 270 (637)
Q Consensus 260 L~~~~~~~vri 270 (637)
+..+|+.+...
T Consensus 388 la~~GI~V~El 398 (1674)
T KOG0951|consen 388 LAPLGITVLEL 398 (1674)
T ss_pred ccccCcEEEEe
Confidence 66666655443
No 416
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.03 E-value=0.5 Score=43.80 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchH----HHHHHHHHhcCCCceEEEeCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI----AVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~----Avd~l~~rL~~~~~~~vrig~ 272 (637)
.+.+.|.-++|=||||.+..++...+-.|.+|+++=|=.. .-..+.++|. ++.+.+.|.
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~--~~~~~~~g~ 65 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLP--NVEIERFGK 65 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT----EEEE--T
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCC--eEEEEEcCC
Confidence 5778888889999999999999999999999999976332 3333444442 245555544
No 417
>PRK06620 hypothetical protein; Validated
Probab=95.01 E-value=0.018 Score=55.82 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.5
Q ss_pred CeEEEEcCCCCchHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVE 231 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~ 231 (637)
+..+|+||||||||+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3489999999999998875
No 418
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.01 E-value=0.022 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
....+|.|||||||||++..+...+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578899999999999988887765
No 419
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.01 E-value=0.029 Score=56.05 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+.++.|.||+||||+.+.++..+.+.|++||++..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 67899999999999999999999999999998864
No 420
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.99 E-value=0.036 Score=53.75 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=29.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.-|.|-.|+||||+.+.++..|.+.|++||++
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 34559999999999999999999999999988
No 421
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.99 E-value=0.021 Score=54.47 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHH-HHHHHHcCCeEEE
Q 006652 214 VFMLHGPPGTGKTTTVVEI-ILQEVKRGSKILA 245 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~-i~~l~~~~~~ILv 245 (637)
+.+|.|.||+|||..++.. +...++.|.+|..
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t 34 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT 34 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE
Confidence 5789999999999998888 7777777766554
No 422
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.98 E-value=0.038 Score=52.69 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=29.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+.+|.||+|+||||.+..+...+-..|.++.++.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999999999999999888877788876664
No 423
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.041 Score=54.22 Aligned_cols=25 Identities=48% Similarity=0.785 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
-+.+|+.||||.||||.+ .+|+.-+
T Consensus 52 lDHvLl~GPPGlGKTTLA-~IIA~Em 76 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLA-HIIANEL 76 (332)
T ss_pred cCeEEeeCCCCCcHHHHH-HHHHHHh
Confidence 468999999999999654 4554433
No 424
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.97 E-value=0.031 Score=54.54 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEecc
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAA 248 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~ 248 (637)
+-|.||+|+||||++..+...+.. .+.+|.+++.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~ 37 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITT 37 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEec
Confidence 458899999999998766665543 3445655443
No 425
>PRK03839 putative kinase; Provisional
Probab=94.97 E-value=0.022 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.|+|||||||+...++..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999877666554
No 426
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=94.97 E-value=0.073 Score=59.65 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=33.5
Q ss_pred CCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 221 PGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 221 PGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
-|.|||.|++-.+......|+.|-|+|+|..-+..=.+.+.
T Consensus 100 TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 100 TGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHH
Confidence 39999999888887778899999999999877766555543
No 427
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.90 E-value=0.02 Score=53.04 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
++|.|+|||||||++..+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 479999999999999877766
No 428
>PRK14531 adenylate kinase; Provisional
Probab=94.90 E-value=0.022 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-.+|.|||||||||....++..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987766654
No 429
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.093 Score=48.13 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHccCC-eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 195 SNLDHSQKDAISKALSSKN-VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~-~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
..++..++.+... .++ +.-..|.+|+||||++.++-..|.+.|..+-++-- |++...|
T Consensus 8 ~~v~~~~r~~~~~---~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-----DnvR~gL 66 (197)
T COG0529 8 HSVTKQEREALKG---QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-----DNVRHGL 66 (197)
T ss_pred cccCHHHHHHHhC---CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-----hhHhhcc
Confidence 3567777666543 344 44589999999999999999999999988877753 4555544
No 430
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.14 Score=53.83 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=35.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc---chHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA---SNIAVDNIV 257 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~---tn~Avd~l~ 257 (637)
++.+.|-.|.||+|.++.+...|++.+-+||+.|- ---||..+.
T Consensus 380 Vi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLr 426 (587)
T KOG0781|consen 380 VISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLR 426 (587)
T ss_pred EEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHH
Confidence 34589999999999999999999999999998753 334555553
No 431
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.85 E-value=0.07 Score=56.38 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=47.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHH-----HHHHHhcCCCceEEEeCCCC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVD-----NIVERLVPHRVRLVRLGHPA 274 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd-----~l~~rL~~~~~~~vrig~~~ 274 (637)
.+.-|.|+|||||||.+..++..|-++|.+|.++-++....| .=..|+.+.|...+-+.++.
T Consensus 206 ~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~~~~d~~g~Ds~r~~~aGa~~v~~~~~~ 272 (366)
T PRK14489 206 PLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHRVDIDKPGKDSHRLRAAGANPTMIVCPE 272 (366)
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcccCCCCCCChhHHHHhCCCceEEEEcCC
Confidence 477899999999999999999999999999999988776542 12445555666555554443
No 432
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.84 E-value=0.021 Score=52.03 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=16.8
Q ss_pred EEcCCCCchHHHHHHHHHHH
Q 006652 217 LHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 217 I~GpPGTGKT~ti~~~i~~l 236 (637)
|.|||||||||.+..++..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999888777653
No 433
>PRK04040 adenylate kinase; Provisional
Probab=94.83 E-value=0.025 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.|+|||||||++..+...+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 367899999999999988777665
No 434
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.82 E-value=0.028 Score=55.44 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=30.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc------CCeEEEeccch
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR------GSKILACAASN 250 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------~~~ILv~a~tn 250 (637)
...++.|.||||||||+.+..++.....+ +.+++.++.-+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 35689999999999999999998765443 25666665443
No 435
>PRK14530 adenylate kinase; Provisional
Probab=94.81 E-value=0.028 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+..+|.|||||||||.+..++..+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999888776554
No 436
>PRK14527 adenylate kinase; Provisional
Probab=94.81 E-value=0.027 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.+|.||||+||||.+..++..+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999887776543
No 437
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.80 E-value=0.036 Score=57.03 Aligned_cols=26 Identities=35% Similarity=0.647 Sum_probs=20.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+....|+.||||||||..+..+...|
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 35688999999999999998888765
No 438
>PRK14532 adenylate kinase; Provisional
Probab=94.78 E-value=0.022 Score=54.08 Aligned_cols=21 Identities=33% Similarity=0.732 Sum_probs=17.6
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+|.|||||||||....++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999987776644
No 439
>PRK06547 hypothetical protein; Provisional
Probab=94.78 E-value=0.039 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+.+|.|||||||||++..+...
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46678899999999998777654
No 440
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.77 E-value=0.023 Score=55.04 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
++..+|..||||||||.++.+++
T Consensus 150 APknVLFyGppGTGKTm~Akala 172 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALA 172 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHh
Confidence 35678999999999999877665
No 441
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=94.77 E-value=0.05 Score=57.92 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=35.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNI 256 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l 256 (637)
..++|.|.||||||+++..++.++..+|.+.+|.-++..-+..+
T Consensus 16 ~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERF 59 (386)
T ss_dssp G-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHh
Confidence 57899999999999999999999999999999999987554443
No 442
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.75 E-value=0.056 Score=49.72 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=35.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch--HHHHHHHHHhcCCCceEEEeCC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN--IAVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn--~Avd~l~~rL~~~~~~~vrig~ 272 (637)
++++|.|++|+||||.+..++... .+.++.++.... ..+|. +.+...+..++.+++
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~--~~~~~~~~~v~~l~~ 58 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDN--QLVVDTDEEIIEMNN 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhH--HHHhCCCceEEEeCC
Confidence 478999999999999998877653 366666654433 33443 233333444555543
No 443
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.75 E-value=0.053 Score=53.70 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=36.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH------------cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK------------RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~------------~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.+.+|.||||||||+.+..++..+.. .+.+||+++-=+. .+++.+|+...
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~-~~~i~~Rl~~i 63 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP-REEIHRRLEAI 63 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC-HHHHHHHHHHH
Confidence 36799999999999999999877542 3567888875443 34666666543
No 444
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.74 E-value=0.19 Score=48.97 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=29.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEE-EeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKIL-ACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~IL-v~a~tn~Avd~l~~rL 260 (637)
..++..|.|+-|||||.+.. .+......++... ++--...+...+.+++
T Consensus 50 ~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~~~~~ai 99 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDATLLEAI 99 (269)
T ss_pred CCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHHHHHHHH
Confidence 45699999999999999888 4434333333332 3333334444555554
No 445
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.73 E-value=0.035 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.||||+||||++-.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999998766554
No 446
>PLN02200 adenylate kinase family protein
Probab=94.71 E-value=0.027 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-+.+|.|||||||||.+..++..
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988877654
No 447
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.71 E-value=0.032 Score=52.35 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.++.||||+||||.+..+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999888776553
No 448
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.66 E-value=0.025 Score=53.82 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=17.5
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+|.|||||||||.+..+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999888766654
No 449
>PHA02533 17 large terminase protein; Provisional
Probab=94.65 E-value=0.36 Score=53.42 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH--HHcCCeEEEeccchHHHHHHHHHhc
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE--VKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l--~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
+..|++.|+..+..... ....+|.-|=..|||++++.++..+ ...+..|+++|++...+..+.+++.
T Consensus 57 Pf~L~p~Q~~i~~~~~~-~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik 125 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHK-NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTK 125 (534)
T ss_pred ecCCcHHHHHHHHHHhc-CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 35689999999887643 5677899999999999998766443 3567899999999999999887753
No 450
>PRK07261 topology modulation protein; Provisional
Probab=94.65 E-value=0.028 Score=52.55 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.6
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
++|.|+|||||||.+..+...
T Consensus 3 i~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999998776543
No 451
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.65 E-value=0.039 Score=52.84 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
++.|.||+|+||||++..+...+ .+.++.++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~ 33 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe
Confidence 35799999999999987776655 4445555544
No 452
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.64 E-value=0.054 Score=55.84 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHc----------cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 194 NSNLDHSQKDAISKALS----------SKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~----------~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...|+++|++++...+. .....++.|+|||||||+...+...+
T Consensus 105 l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 105 LEQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999888875 34578899999999999988766554
No 453
>PHA02542 41 41 helicase; Provisional
Probab=94.61 E-value=0.054 Score=58.96 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=40.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...+++|-|+||.|||+.+..++...++.|++|++.+.=- ..+.+..|+.
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM-~~~ql~~Rl~ 238 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEM-AEEVIAKRID 238 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccC-CHHHHHHHHH
Confidence 3468999999999999999999999888899999998633 3356666653
No 454
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.61 E-value=0.05 Score=55.37 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..+++.|...+..+....-..||.|+-||||||++-++... +....||+.+=-|
T Consensus 156 gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~-i~~~eRvItiEDt 209 (355)
T COG4962 156 GTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGF-IDSDERVITIEDT 209 (355)
T ss_pred CCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc-CCCcccEEEEeeh
Confidence 57899999999999886668999999999999998777654 4445688887654
No 455
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=94.59 E-value=0.045 Score=53.33 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=31.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+.++.|.||+|||++.+.+...+.+.|.+++++..
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~ 35 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 36789999999999999999999999999988754
No 456
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=0.2 Score=51.53 Aligned_cols=57 Identities=33% Similarity=0.484 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeE-EEeccchH--HHHHHHHHhcCCCceEE
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI-LACAASNI--AVDNIVERLVPHRVRLV 268 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I-Lv~a~tn~--Avd~l~~rL~~~~~~~v 268 (637)
..++++.|--|+|||||+..++.++-++|.++ ||||.|=. |-|.+..--.+.++.++
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 35788999999999999999999999998655 78877654 55666654444444443
No 457
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.59 E-value=0.11 Score=52.10 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=39.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...+++|-|+||.|||+.+..++..++.. +.+|++.+.=. ..+++..|+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm-~~~~l~~R~l 68 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM-SEEELAARLL 68 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS--HHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC-CHHHHHHHHH
Confidence 34599999999999999999999999887 69999999833 3445666653
No 458
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.57 E-value=0.023 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.3
Q ss_pred EEEcCCCCchHHHHHHHHHHH
Q 006652 216 MLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 216 lI~GpPGTGKT~ti~~~i~~l 236 (637)
+|.|||||||||++..+...+
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 688999999998887777654
No 459
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.55 E-value=0.031 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+..|.|+|||||||++..+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999988877664
No 460
>PRK14528 adenylate kinase; Provisional
Probab=94.54 E-value=0.031 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..+|.||||+||||++..+...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999987766544
No 461
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.51 E-value=0.05 Score=50.66 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=30.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+++..+-+|+||||+.+.++..+...|++||++=
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLD 35 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEe
Confidence 4677889999999999999999999999999863
No 462
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=94.50 E-value=0.058 Score=57.83 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHH-HHHHHHHHcCCeEEEeccc----hHHHHHHHHHhcCCCceE-
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVV-EIILQEVKRGSKILACAAS----NIAVDNIVERLVPHRVRL- 267 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~-~~i~~l~~~~~~ILv~a~t----n~Avd~l~~rL~~~~~~~- 267 (637)
...|-+-|..||++-|-...-.+|..+.+||||-+.- +-|..++..|++.|.+.|- |.--+++.+|..+.++++
T Consensus 214 ~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglkva 293 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVA 293 (830)
T ss_pred cceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEE
Confidence 4678999999999888756677888889999996532 2356667789999988774 444467788888888776
Q ss_pred EEeCC
Q 006652 268 VRLGH 272 (637)
Q Consensus 268 vrig~ 272 (637)
+|+|.
T Consensus 294 irVG~ 298 (830)
T COG1202 294 IRVGM 298 (830)
T ss_pred EEech
Confidence 78874
No 463
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.50 E-value=0.25 Score=52.10 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=48.9
Q ss_pred HHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHhcCC
Q 006652 200 SQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 200 ~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.|+.-.-..+..+.+.++.|-.|+||||-|-..+.....+ ...|.++-|-..|+-.++.|..+.
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadE 114 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADE 114 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHH
Confidence 4455555556668899999999999999988877766543 466777778888999999998653
No 464
>COG3911 Predicted ATPase [General function prediction only]
Probab=94.50 E-value=0.034 Score=49.23 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
.++++.|+||.||||.+.++. ..|.-+..-+++
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa----~~Gfatvee~~r 42 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALA----RAGFATVEEAGR 42 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHH----HcCceeeccchh
Confidence 489999999999999887665 346544444443
No 465
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.49 E-value=0.12 Score=59.52 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=47.9
Q ss_pred CHHHHH---HHHHHHcc-----CCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 198 DHSQKD---AISKALSS-----KNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 198 n~~Q~~---Av~~~l~~-----~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
=+.|.+ +|..++.. ....+|.+|.|||||.. ++-.+....+.+++|+|-|.|..--+.|..+
T Consensus 27 R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 27 RAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhh
Confidence 456666 77777774 36899999999999963 4444555566899999999999888888654
No 466
>PRK02496 adk adenylate kinase; Provisional
Probab=94.48 E-value=0.032 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+|.||||+||||++..+...+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999998887776553
No 467
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.47 E-value=0.064 Score=61.18 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=40.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
..+++|.||||||||+.+...+......|.+++++.+-+..-.+.++++
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~l 108 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL 108 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHc
Confidence 5689999999999999999999888888999988887776665555554
No 468
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.46 E-value=0.056 Score=56.25 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcCC----eEEEeccchHHHHHHHHHhc
Q 006652 204 AISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGS----KILACAASNIAVDNIVERLV 261 (637)
Q Consensus 204 Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~----~ILv~a~tn~Avd~l~~rL~ 261 (637)
+|...+. ...-.+|.||||||||+.+..++..+..... .++++.....-+.++.+.+.
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~ 186 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVK 186 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHh
Confidence 5554332 2335699999999999999998888876532 34455555556666666653
No 469
>PRK06761 hypothetical protein; Provisional
Probab=94.44 E-value=0.04 Score=55.41 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
.+.+|.||||+||||++..+...+...+-.+-+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 578999999999999999998887655555443
No 470
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.046 Score=59.85 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
+..+++|||||||||++..++..+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999988888774
No 471
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.44 E-value=0.061 Score=58.14 Aligned_cols=50 Identities=22% Similarity=0.425 Sum_probs=40.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEeccchHHHHHHHHHhc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...+++|-|+||+|||+.+..++..+. ..|.+|++++.= ...+++..|+.
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m~~~~l~~Rl~ 243 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-MSAEQLGERLL 243 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-CCHHHHHHHHH
Confidence 456999999999999999999998876 679999999854 45566677764
No 472
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.44 E-value=0.058 Score=55.39 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=36.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec--cchHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA--ASNIAVDNIVE 258 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a--~tn~Avd~l~~ 258 (637)
.+.++.|.-|+||||+.++.+..+..+|+++|+++ |.+...|-+-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~ 49 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQ 49 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCC
Confidence 36789999999999999999999999999999985 45555554443
No 473
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.42 E-value=0.033 Score=56.45 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..-.||.||||||||..++.+...|
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578999999999999999888776
No 474
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=94.42 E-value=0.67 Score=52.67 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHc----c----C-CeEEEEcCCCCchHHHHHHHHHHHHHc--C-----CeEEEeccchHHHHHHH
Q 006652 194 NSNLDHSQKDAISKALS----S----K-NVFMLHGPPGTGKTTTVVEIILQEVKR--G-----SKILACAASNIAVDNIV 257 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~----~----~-~~~lI~GpPGTGKT~ti~~~i~~l~~~--~-----~~ILv~a~tn~Avd~l~ 257 (637)
...|-+.|++.++.... . . +=.++.=.||+|||..++..++.++++ + .+.||+||+- -+.+-.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWk 314 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWK 314 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHHHH
Confidence 35789999999998765 1 1 113455569999999999999999875 4 7889999953 343433
Q ss_pred HH
Q 006652 258 ER 259 (637)
Q Consensus 258 ~r 259 (637)
..
T Consensus 315 kE 316 (776)
T KOG0390|consen 315 KE 316 (776)
T ss_pred HH
Confidence 33
No 475
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.034 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.749 Sum_probs=18.2
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+|.||||+||||.+..+...
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999988877765
No 476
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.025 Score=61.14 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
=+|+|||||+|||..+-+++.++
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhc
Confidence 37899999999999988887766
No 477
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.38 E-value=0.053 Score=52.45 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
..++.|.||+||||||++..+...+ .+..+.++.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~ 39 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIP 39 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEe
Confidence 3467899999999998887776655 333444443
No 478
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.37 E-value=0.05 Score=51.96 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSK 242 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ 242 (637)
+.-|.|||||||||++..+...|-+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 35699999999999998888887665543
No 479
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.36 E-value=0.035 Score=54.02 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=17.2
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+|.|||||||||+...++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999887666544
No 480
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=94.36 E-value=0.066 Score=50.84 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=30.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+++..+-.|+||||+++.++..+...|++||++-.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred CEEEcCCCCccHHHHHHHHHhcccccccccccccc
Confidence 46788999999999999999999999999988755
No 481
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=94.32 E-value=0.13 Score=57.06 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHc--cCCeEEEE-cCCCCchHHHHHHHHHHHHH-c--CCeEEEeccchHHHHHHHHHhcCC--Cce
Q 006652 195 SNLDHSQKDAISKALS--SKNVFMLH-GPPGTGKTTTVVEIILQEVK-R--GSKILACAASNIAVDNIVERLVPH--RVR 266 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~--~~~~~lI~-GpPGTGKT~ti~~~i~~l~~-~--~~~ILv~a~tn~Avd~l~~rL~~~--~~~ 266 (637)
..|-+.|.+-+.=... .+++-.|. ---|=|||--.++++.+|.. . ....||++| -+..++-...+.+. +++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P-~StL~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAP-KSTLDNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEee-HhhHHHHHHHHHHhCCCcc
Confidence 4567777776653332 35555444 45799999877777777765 2 468999999 45566666655544 233
Q ss_pred EEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006652 267 LVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDV 346 (637)
Q Consensus 267 ~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 346 (637)
++.... +..+|..+ .+++
T Consensus 245 ~~~~~G--------------------------------------------dk~eR~~~------------------~r~~ 262 (971)
T KOG0385|consen 245 VVVYHG--------------------------------------------DKEERAAL------------------RRDI 262 (971)
T ss_pred eEEEeC--------------------------------------------CHHHHHHH------------------HHHh
Confidence 332211 11111111 1122
Q ss_pred hh--cCceeeeeccccc--ccccCCCCCCEEEEecCCCcch-HHHHHHHHh----CCeEEEeCCCCC
Q 006652 347 IK--NADVVLTTLTGAV--SRKLDNTSFDLVIIDEAAQALE-IACWIALLK----GSRCILAGDHLQ 404 (637)
Q Consensus 347 l~--~~~vi~~T~~~~~--~~~l~~~~fd~vIIDEA~q~~e-~~~l~~l~~----~~~~vlvGD~~Q 404 (637)
+. ..+|+++|.-.+. ...+...++.++|||||..+-- -..|.-+++ ..++.+.|=|-|
T Consensus 263 ~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQ 329 (971)
T KOG0385|consen 263 MLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQ 329 (971)
T ss_pred hccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCccc
Confidence 22 4667666665544 2346677999999999998844 344444443 389999999999
No 482
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.29 E-value=0.059 Score=55.82 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=30.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc------CCeEEEeccch
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR------GSKILACAASN 250 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------~~~ILv~a~tn 250 (637)
...++.|.||||||||+.+..++.....+ +.++++++.-+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 35689999999999999999998776543 23666665433
No 483
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.27 E-value=0.036 Score=57.23 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+-..+|+||||||||..+-.++..+
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 3467899999999998877666553
No 484
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.25 E-value=0.035 Score=53.75 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=17.2
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+|.|||||||||.+..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999987766543
No 485
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.20 E-value=0.13 Score=54.46 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHcC-----CeEEEeccchHHHHHHHHH
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRG-----SKILACAASNIAVDNIVER 259 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~-----~~ILv~a~tn~Avd~l~~r 259 (637)
+-|...|=-+|.-. -.+-.+.-|||||.. ++-++..|+.++ .||||++||...+-.+..-
T Consensus 206 pIQ~a~IPvallgk-DIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV 271 (691)
T KOG0338|consen 206 PIQVATIPVALLGK-DICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSV 271 (691)
T ss_pred chhhhcccHHhhcc-hhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHH
Confidence 33444443333312 233456679999964 555666776654 5999999999876655443
No 486
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.19 E-value=0.21 Score=53.31 Aligned_cols=67 Identities=22% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHc--------CCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKR--------GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~--------~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..++.-|+++|=..|. ..-++|.++-|||||-. +.=+|..|... |-=-||++||+..+-.+.+-+.+
T Consensus 158 ~~pTsVQkq~IP~lL~-grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qK 233 (708)
T KOG0348|consen 158 SAPTSVQKQAIPVLLE-GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQK 233 (708)
T ss_pred CccchHhhcchhhhhc-CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHH
Confidence 5678899999998888 56789999999999975 33445555432 45579999999988777665443
No 487
>PRK13947 shikimate kinase; Provisional
Probab=94.17 E-value=0.041 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.|+|||||||+...++..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999887776554
No 488
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.17 E-value=0.21 Score=51.87 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCCCEEEEecCCCcchHH--HHHHHH--h--CCeEEEeCC-CCCCCccccCH
Q 006652 368 TSFDLVIIDEAAQALEIA--CWIALL--K--GSRCILAGD-HLQLPPTVQSV 412 (637)
Q Consensus 368 ~~fd~vIIDEA~q~~e~~--~l~~l~--~--~~~~vlvGD-~~QL~p~v~s~ 412 (637)
..+.++|||+|..+++.. .|.-.+ + ..-++|+-+ +.+|.||+.|.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 467999999998887753 233333 1 255677766 68899998774
No 489
>PRK13973 thymidylate kinase; Provisional
Probab=94.15 E-value=0.12 Score=50.26 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+.+|-|++|+||||.+..+...|-..|.++..+.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47789999999999999999988888888887773
No 490
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.068 Score=58.98 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=25.2
Q ss_pred HHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 204 AISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 204 Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+..++... ...+++||||||||+++..++..+.
T Consensus 27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555432 2478999999999999988887774
No 491
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.14 E-value=0.038 Score=60.29 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.-.|+.||||||||.++..++..
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45889999999999888777654
No 492
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=94.14 E-value=0.16 Score=57.95 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=36.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 216 MLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 216 lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
+..=.-|.|||.|++-.+...+..|..|-|+|||..-+..=.+.+
T Consensus 97 iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 97 IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHH
Confidence 556678999999988877777889999999999987665544443
No 493
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.13 E-value=0.068 Score=60.20 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC-CeEEEeccchHHHHHH
Q 006652 203 DAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACAASNIAVDNI 256 (637)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~a~tn~Avd~l 256 (637)
+++..++......++.||||||||+.+..++..+-... ..++++..++.....+
T Consensus 28 ~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~ 82 (608)
T TIGR00764 28 EIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPR 82 (608)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHH
Confidence 34555555567889999999999998888776554332 4555555443333333
No 494
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.12 E-value=0.13 Score=59.22 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=36.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+..-+-|+|||.+++-.+....-.|..|.|+|+|..-+....+.+..
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 456778999999987766655556788899999999877776666543
No 495
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.069 Score=57.14 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 202 KDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 202 ~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+.+.+++... ...+++||||+||||++..++..+.
T Consensus 25 ~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 25 TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455555532 2478999999999999988887764
No 496
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.10 E-value=0.078 Score=55.22 Aligned_cols=50 Identities=18% Similarity=0.370 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+++++...+..+.......+|.||+||||||++..++.. +....+++++
T Consensus 162 ~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~-i~~~~riv~i 211 (340)
T TIGR03819 162 TFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLAL-VAPDERIVLV 211 (340)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHcc-CCCCCcEEEE
Confidence 4678888888888877889999999999999998776544 4455565554
No 497
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.09 E-value=0.062 Score=55.59 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=31.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEeccch
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAASN 250 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~tn 250 (637)
+.++.|+||+||||.+..+...|. ..|.+|.+++.-.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 367899999999999998888886 5789999988744
No 498
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=94.05 E-value=0.2 Score=57.47 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=35.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+....-|+|||-+++-.+....-.|..|-|+|||..-+....+.+.+
T Consensus 97 ~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 97 KIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred chhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 367788999999876655543334678899999999887777766544
No 499
>PRK08506 replicative DNA helicase; Provisional
Probab=94.04 E-value=0.078 Score=57.98 Aligned_cols=51 Identities=14% Similarity=0.384 Sum_probs=43.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...+++|-|.||.|||+.+..++..++..|.+|++.+.= -..+++..|+..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla 241 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLS 241 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHH
Confidence 456899999999999999999999998889999998774 566777777643
No 500
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.04 E-value=0.063 Score=51.74 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH----cCCeEEEeccch
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK----RGSKILACAASN 250 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~----~~~~ILv~a~tn 250 (637)
.+..+|.|++|||||+++..++..++. ..-++.++-+..
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~ 80 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKG 80 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTS
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCc
Confidence 458999999999999999999999987 345666666653
Done!