Query 006652
Match_columns 637
No_of_seqs 446 out of 2636
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 05:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 4E-110 1E-114 944.7 58.1 620 13-637 2-643 (646)
2 2gk6_A Regulator of nonsense t 100.0 3.9E-82 1.3E-86 711.0 53.4 585 8-632 2-612 (624)
3 2wjy_A Regulator of nonsense t 100.0 8.9E-80 3E-84 702.1 58.4 588 5-632 175-788 (800)
4 2xzl_A ATP-dependent helicase 100.0 5.8E-80 2E-84 704.7 55.9 586 5-631 177-789 (802)
5 3lfu_A DNA helicase II; SF1 he 100.0 8E-34 2.7E-38 322.4 20.0 315 194-535 7-360 (647)
6 3e1s_A Exodeoxyribonuclease V, 100.0 1.2E-32 4.1E-37 304.1 14.1 288 190-609 183-544 (574)
7 1pjr_A PCRA; DNA repair, DNA r 100.0 6.8E-33 2.3E-37 316.6 11.7 312 195-537 10-366 (724)
8 1uaa_A REP helicase, protein ( 100.0 1.5E-31 5E-36 304.3 20.2 310 196-533 2-353 (673)
9 3upu_A ATP-dependent DNA helic 100.0 5.8E-30 2E-34 277.6 15.7 183 195-460 24-214 (459)
10 1w36_D RECD, exodeoxyribonucle 100.0 2E-28 6.7E-33 273.3 15.0 331 198-607 151-584 (608)
11 3vkw_A Replicase large subunit 99.9 5.3E-25 1.8E-29 230.8 19.7 273 212-625 161-436 (446)
12 3u4q_A ATP-dependent helicase/ 99.9 1.5E-23 5.2E-28 251.8 20.7 157 369-532 400-592 (1232)
13 1w36_B RECB, exodeoxyribonucle 99.9 1E-21 3.4E-26 235.4 15.8 155 369-538 377-567 (1180)
14 3dmn_A Putative DNA helicase; 99.7 2.2E-16 7.5E-21 147.3 10.8 141 440-606 2-154 (174)
15 3u4q_B ATP-dependent helicase/ 99.6 1.8E-14 6E-19 173.1 19.0 143 371-541 203-362 (1166)
16 3b6e_A Interferon-induced heli 98.9 3.2E-09 1.1E-13 102.0 9.7 67 194-261 31-104 (216)
17 2fz4_A DNA repair protein RAD2 98.9 9.9E-09 3.4E-13 100.4 12.2 73 194-270 91-164 (237)
18 2gxq_A Heat resistant RNA depe 98.8 2.2E-08 7.4E-13 95.6 11.9 68 195-263 22-95 (207)
19 2pl3_A Probable ATP-dependent 98.7 5E-08 1.7E-12 95.3 11.6 68 195-263 46-120 (236)
20 1rif_A DAR protein, DNA helica 98.7 3.1E-08 1.1E-12 99.6 10.1 68 195-263 112-180 (282)
21 1qde_A EIF4A, translation init 98.7 4.5E-08 1.5E-12 94.7 10.6 68 195-263 35-105 (224)
22 3iuy_A Probable ATP-dependent 98.7 6.8E-08 2.3E-12 93.8 11.5 68 195-263 41-117 (228)
23 1vec_A ATP-dependent RNA helic 98.7 8.7E-08 3E-12 91.3 11.8 67 195-262 24-93 (206)
24 1hv8_A Putative ATP-dependent 98.7 5.5E-08 1.9E-12 101.3 11.2 69 195-263 27-97 (367)
25 3ber_A Probable ATP-dependent 98.7 1.9E-07 6.4E-12 92.0 13.5 68 195-263 64-134 (249)
26 1t6n_A Probable ATP-dependent 98.7 1.6E-07 5.5E-12 90.5 12.7 68 195-263 35-105 (220)
27 3bor_A Human initiation factor 98.6 6.2E-08 2.1E-12 94.7 9.4 68 195-263 51-121 (237)
28 3fe2_A Probable ATP-dependent 98.6 2.6E-07 9E-12 90.5 13.2 67 195-262 50-124 (242)
29 3h1t_A Type I site-specific re 98.6 1.9E-07 6.4E-12 104.2 13.6 71 195-265 177-261 (590)
30 3oiy_A Reverse gyrase helicase 98.6 1.6E-07 5.6E-12 99.8 12.2 67 196-263 21-87 (414)
31 1wrb_A DJVLGB; RNA helicase, D 98.6 2.5E-07 8.4E-12 91.3 12.7 68 195-263 44-123 (253)
32 2fwr_A DNA repair protein RAD2 98.6 1.7E-07 5.8E-12 101.5 12.5 69 194-266 91-159 (472)
33 3ly5_A ATP-dependent RNA helic 98.6 2.4E-07 8.1E-12 92.0 12.2 68 195-263 75-149 (262)
34 2oxc_A Probable ATP-dependent 98.6 2.6E-07 9.1E-12 89.7 11.2 68 195-263 45-115 (230)
35 1s2m_A Putative ATP-dependent 98.6 2.5E-07 8.6E-12 97.7 12.0 68 195-263 42-112 (400)
36 2z0m_A 337AA long hypothetical 98.6 3.3E-07 1.1E-11 94.1 12.4 65 195-263 15-79 (337)
37 2oca_A DAR protein, ATP-depend 98.6 2.3E-07 8E-12 101.4 11.8 68 195-263 112-180 (510)
38 2zpa_A Uncharacterized protein 98.5 1.8E-07 6.1E-12 103.0 10.2 160 194-458 173-335 (671)
39 1wp9_A ATP-dependent RNA helic 98.5 5.8E-07 2E-11 97.0 13.8 67 195-263 8-75 (494)
40 1q0u_A Bstdead; DEAD protein, 98.5 9.3E-08 3.2E-12 92.2 6.5 67 195-262 25-94 (219)
41 4a2p_A RIG-I, retinoic acid in 98.5 5.3E-07 1.8E-11 99.5 13.2 68 195-263 6-78 (556)
42 3tbk_A RIG-I helicase domain; 98.5 6E-07 2.1E-11 99.0 12.5 68 195-263 3-75 (555)
43 3dkp_A Probable ATP-dependent 98.5 2.1E-07 7.1E-12 91.3 7.2 68 195-263 50-121 (245)
44 1xti_A Probable ATP-dependent 98.5 8.2E-07 2.8E-11 93.3 12.3 68 195-263 29-99 (391)
45 2j0s_A ATP-dependent RNA helic 98.4 7.9E-07 2.7E-11 94.2 12.1 68 195-263 58-128 (410)
46 1fuu_A Yeast initiation factor 98.4 5.6E-07 1.9E-11 94.6 10.7 67 195-262 42-111 (394)
47 1gm5_A RECG; helicase, replica 98.4 1.1E-06 3.8E-11 99.9 13.6 70 194-263 366-440 (780)
48 3pey_A ATP-dependent RNA helic 98.4 6.5E-07 2.2E-11 94.1 10.9 69 195-263 26-98 (395)
49 3eiq_A Eukaryotic initiation f 98.4 8.9E-07 3E-11 93.8 11.3 68 195-263 61-131 (414)
50 2i4i_A ATP-dependent RNA helic 98.4 1.7E-06 5.9E-11 91.7 13.3 67 195-262 36-123 (417)
51 2va8_A SSO2462, SKI2-type heli 98.4 8.4E-07 2.9E-11 101.3 10.7 68 195-262 29-97 (715)
52 4a4z_A Antiviral helicase SKI2 98.4 1.6E-06 5.6E-11 101.6 12.8 71 192-263 35-105 (997)
53 4a2q_A RIG-I, retinoic acid in 98.4 1.5E-06 5.3E-11 100.2 12.3 69 194-263 246-319 (797)
54 3l9o_A ATP-dependent RNA helic 98.3 1.3E-06 4.3E-11 103.5 11.3 71 192-263 180-250 (1108)
55 4gl2_A Interferon-induced heli 98.3 5.4E-07 1.9E-11 102.6 7.9 68 195-263 6-80 (699)
56 2zj8_A DNA helicase, putative 98.3 9.1E-07 3.1E-11 101.0 9.3 68 195-262 22-90 (720)
57 2ykg_A Probable ATP-dependent 98.3 2.5E-06 8.4E-11 97.1 12.6 68 195-263 12-84 (696)
58 4ddu_A Reverse gyrase; topoiso 98.3 2.3E-06 8E-11 101.2 12.7 68 195-263 77-144 (1104)
59 2xgj_A ATP-dependent RNA helic 98.3 1.7E-06 5.8E-11 101.5 11.4 70 193-263 83-152 (1010)
60 3fht_A ATP-dependent RNA helic 98.3 1.7E-06 5.6E-11 91.6 9.7 68 195-262 46-117 (412)
61 2eyq_A TRCF, transcription-rep 98.3 9E-06 3.1E-10 96.8 16.9 70 193-262 600-674 (1151)
62 2p6r_A Afuhel308 helicase; pro 98.3 8.9E-07 3E-11 100.8 7.7 67 195-262 24-90 (702)
63 2db3_A ATP-dependent RNA helic 98.3 4E-06 1.4E-10 89.6 12.4 68 195-263 77-152 (434)
64 3fho_A ATP-dependent RNA helic 98.2 7.9E-07 2.7E-11 97.1 5.5 68 196-263 141-212 (508)
65 4a2w_A RIG-I, retinoic acid in 98.2 2.5E-06 8.7E-11 99.8 10.0 69 194-263 246-319 (936)
66 3llm_A ATP-dependent RNA helic 98.2 5.3E-06 1.8E-10 80.7 10.6 66 196-262 61-131 (235)
67 3fmo_B ATP-dependent RNA helic 98.2 3.8E-06 1.3E-10 85.0 9.2 68 195-262 113-184 (300)
68 2l8b_A Protein TRAI, DNA helic 98.2 8.1E-06 2.8E-10 74.1 10.0 63 198-260 36-100 (189)
69 3fmp_B ATP-dependent RNA helic 98.1 3.1E-06 1.1E-10 91.6 8.3 68 195-262 113-184 (479)
70 2b8t_A Thymidine kinase; deoxy 98.1 4.3E-06 1.5E-10 80.2 7.8 39 212-250 12-50 (223)
71 3sqw_A ATP-dependent RNA helic 98.1 8.5E-06 2.9E-10 90.5 11.1 68 195-262 42-117 (579)
72 3i5x_A ATP-dependent RNA helic 98.1 5.6E-06 1.9E-10 91.6 9.4 68 195-262 93-168 (563)
73 3dmq_A RNA polymerase-associat 98.1 1.5E-05 5E-10 93.6 12.6 66 194-260 151-219 (968)
74 1gku_B Reverse gyrase, TOP-RG; 98.0 9.9E-06 3.4E-10 95.8 10.4 65 197-263 58-122 (1054)
75 3crv_A XPD/RAD3 related DNA he 98.0 1.3E-05 4.5E-10 88.3 10.6 73 196-271 3-82 (551)
76 1z63_A Helicase of the SNF2/RA 98.0 1.6E-05 5.4E-10 86.6 10.6 143 193-404 34-189 (500)
77 1g5t_A COB(I)alamin adenosyltr 98.0 9.1E-05 3.1E-09 68.9 13.8 59 211-272 27-89 (196)
78 3kl4_A SRP54, signal recogniti 98.0 4.3E-05 1.5E-09 80.5 12.9 46 213-258 98-146 (433)
79 2j9r_A Thymidine kinase; TK1, 98.0 1.8E-05 6.1E-10 74.7 8.9 38 213-250 29-66 (214)
80 2vl7_A XPD; helicase, unknown 97.9 2.2E-05 7.4E-10 86.2 9.2 75 196-273 7-84 (540)
81 2v1x_A ATP-dependent DNA helic 97.9 4.1E-05 1.4E-09 84.8 11.4 73 195-271 43-115 (591)
82 1yks_A Genome polyprotein [con 97.9 4.7E-05 1.6E-09 81.3 11.3 55 211-265 7-62 (440)
83 1z3i_X Similar to RAD54-like; 97.9 0.00016 5.6E-09 81.0 15.8 149 194-404 53-232 (644)
84 1oyw_A RECQ helicase, ATP-depe 97.9 5.6E-05 1.9E-09 82.6 11.7 73 195-271 24-96 (523)
85 2w00_A HSDR, R.ECOR124I; ATP-b 97.9 2.6E-05 8.9E-10 91.1 9.5 68 196-263 271-353 (1038)
86 3dm5_A SRP54, signal recogniti 97.9 0.0001 3.4E-09 77.7 13.0 56 213-268 101-159 (443)
87 2wv9_A Flavivirin protease NS2 97.9 2.9E-05 1E-09 87.0 9.3 63 203-265 227-295 (673)
88 1w4r_A Thymidine kinase; type 97.8 2.5E-05 8.6E-10 72.5 7.2 37 213-249 21-57 (195)
89 4f92_B U5 small nuclear ribonu 97.8 4.4E-05 1.5E-09 93.9 11.2 67 195-261 925-993 (1724)
90 2z83_A Helicase/nucleoside tri 97.8 6.4E-05 2.2E-09 80.7 10.5 55 209-263 18-73 (459)
91 2jlq_A Serine protease subunit 97.8 4E-05 1.4E-09 82.1 8.7 60 204-263 11-71 (451)
92 2orv_A Thymidine kinase; TP4A 97.7 0.00011 3.9E-09 69.8 9.4 38 213-250 20-57 (234)
93 3o8b_A HCV NS3 protease/helica 97.7 1.8E-05 6E-10 87.8 4.0 49 211-262 231-279 (666)
94 4f92_B U5 small nuclear ribonu 97.6 0.00011 3.9E-09 90.4 10.4 67 195-261 78-155 (1724)
95 2v6i_A RNA helicase; membrane, 97.6 0.00011 3.8E-09 78.2 9.2 51 212-262 2-53 (431)
96 3ec2_A DNA replication protein 97.6 0.00012 4.1E-09 67.7 7.4 50 198-247 16-74 (180)
97 2whx_A Serine protease/ntpase/ 97.5 0.00014 4.7E-09 80.9 8.4 60 204-264 179-239 (618)
98 3e2i_A Thymidine kinase; Zn-bi 97.5 0.00037 1.3E-08 65.5 9.8 39 212-250 28-66 (219)
99 1vma_A Cell division protein F 97.5 0.00054 1.8E-08 69.0 11.4 35 213-247 105-139 (306)
100 3mwy_W Chromo domain-containin 97.5 0.00026 8.7E-09 81.5 9.8 159 194-404 234-407 (800)
101 3rc3_A ATP-dependent RNA helic 97.4 0.00015 5.1E-09 81.1 7.3 52 212-267 155-206 (677)
102 2w58_A DNAI, primosome compone 97.3 0.00036 1.2E-08 65.7 6.8 36 213-248 55-90 (202)
103 2v1u_A Cell division control p 97.3 0.00088 3E-08 69.7 10.2 41 198-238 24-70 (387)
104 1zu4_A FTSY; GTPase, signal re 97.2 0.0034 1.1E-07 63.6 13.4 35 213-247 106-140 (320)
105 3bos_A Putative DNA replicatio 97.2 0.00074 2.5E-08 65.1 7.8 53 196-248 34-88 (242)
106 2v3c_C SRP54, signal recogniti 97.1 0.00068 2.3E-08 71.7 7.9 35 214-248 101-135 (432)
107 2orw_A Thymidine kinase; TMTK, 97.1 0.00049 1.7E-08 63.9 5.9 38 212-249 3-40 (184)
108 1j8m_F SRP54, signal recogniti 97.1 0.0023 7.7E-08 64.2 11.1 36 214-249 100-135 (297)
109 1a5t_A Delta prime, HOLB; zinc 97.1 0.0013 4.4E-08 67.4 9.3 25 214-238 26-50 (334)
110 2kjq_A DNAA-related protein; s 97.1 0.00049 1.7E-08 61.5 5.1 54 192-247 18-71 (149)
111 2gno_A DNA polymerase III, gam 97.0 0.0013 4.3E-08 66.4 7.9 44 369-412 82-132 (305)
112 1ls1_A Signal recognition part 97.0 0.002 6.7E-08 64.6 9.2 36 213-248 99-134 (295)
113 3te6_A Regulatory protein SIR3 97.0 0.00053 1.8E-08 69.2 4.9 28 211-238 44-71 (318)
114 2dr3_A UPF0273 protein PH0284; 96.9 0.0011 3.6E-08 64.4 6.6 52 211-263 22-73 (247)
115 1jbk_A CLPB protein; beta barr 96.9 0.0018 6.1E-08 59.7 7.6 40 199-238 28-69 (195)
116 1tf5_A Preprotein translocase 96.9 0.0061 2.1E-07 68.6 12.8 64 196-262 83-146 (844)
117 2xxa_A Signal recognition part 96.9 0.0034 1.2E-07 66.3 10.3 43 214-256 102-148 (433)
118 3n70_A Transport activator; si 96.9 0.00059 2E-08 60.6 3.7 34 210-243 22-55 (145)
119 2fsf_A Preprotein translocase 96.8 0.0052 1.8E-07 69.0 11.8 65 195-262 73-137 (853)
120 2xau_A PRE-mRNA-splicing facto 96.8 0.0015 5.1E-08 74.5 7.5 65 198-262 95-162 (773)
121 1tue_A Replication protein E1; 96.8 0.00079 2.7E-08 62.8 4.2 23 214-236 60-82 (212)
122 2qgz_A Helicase loader, putati 96.8 0.0014 4.9E-08 66.1 6.6 37 212-248 152-189 (308)
123 2r8r_A Sensor protein; KDPD, P 96.8 0.0012 4E-08 62.8 5.1 35 214-248 8-42 (228)
124 1xx6_A Thymidine kinase; NESG, 96.8 0.0013 4.4E-08 61.3 5.3 37 213-249 9-45 (191)
125 2p65_A Hypothetical protein PF 96.8 0.0018 6.2E-08 59.5 6.4 40 199-238 28-69 (187)
126 1l8q_A Chromosomal replication 96.7 0.003 1E-07 64.1 8.3 37 213-249 38-74 (324)
127 1nkt_A Preprotein translocase 96.7 0.0075 2.6E-07 68.0 11.9 64 196-262 111-174 (922)
128 2ffh_A Protein (FFH); SRP54, s 96.6 0.011 3.7E-07 62.1 11.4 35 213-247 99-133 (425)
129 2r2a_A Uncharacterized protein 96.6 0.0011 3.6E-08 62.4 3.3 34 213-246 6-45 (199)
130 4a15_A XPD helicase, ATP-depen 96.5 0.0046 1.6E-07 68.7 8.7 75 198-272 5-87 (620)
131 2ipc_A Preprotein translocase 96.5 0.0046 1.6E-07 69.6 8.3 64 196-262 79-142 (997)
132 1ofh_A ATP-dependent HSL prote 96.4 0.004 1.4E-07 62.6 6.7 25 212-236 50-74 (310)
133 2qby_B CDC6 homolog 3, cell di 96.4 0.0068 2.3E-07 63.0 8.5 41 199-239 26-72 (384)
134 3co5_A Putative two-component 96.4 0.0015 5E-08 57.9 2.8 24 210-233 25-48 (143)
135 3h4m_A Proteasome-activating n 96.3 0.003 1E-07 62.8 5.3 24 212-235 51-74 (285)
136 2bjv_A PSP operon transcriptio 96.3 0.0029 9.8E-08 62.3 5.0 37 210-246 27-63 (265)
137 2chg_A Replication factor C sm 96.3 0.0039 1.3E-07 58.9 5.8 42 198-239 22-65 (226)
138 1njg_A DNA polymerase III subu 96.3 0.0036 1.2E-07 60.0 5.6 41 198-238 28-71 (250)
139 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0044 1.5E-07 60.6 6.2 24 213-236 40-63 (262)
140 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0044 1.5E-07 59.3 6.0 48 212-260 23-70 (235)
141 2zts_A Putative uncharacterize 96.3 0.0051 1.7E-07 59.6 6.4 52 211-263 29-81 (251)
142 4dzz_A Plasmid partitioning pr 96.2 0.035 1.2E-06 51.8 11.8 35 214-248 4-38 (206)
143 3bh0_A DNAB-like replicative h 96.2 0.0049 1.7E-07 62.4 6.0 50 211-261 67-116 (315)
144 3hr8_A Protein RECA; alpha and 96.2 0.0032 1.1E-07 64.5 4.7 49 212-260 61-109 (356)
145 3syl_A Protein CBBX; photosynt 96.2 0.0049 1.7E-07 62.0 5.7 28 213-240 68-95 (309)
146 3io5_A Recombination and repai 96.2 0.0035 1.2E-07 62.5 4.5 49 212-260 28-78 (333)
147 1xjc_A MOBB protein homolog; s 96.1 0.0057 2E-07 55.5 5.4 38 213-250 5-42 (169)
148 1sxj_C Activator 1 40 kDa subu 96.1 0.0052 1.8E-07 62.9 5.7 40 198-237 30-71 (340)
149 2zr9_A Protein RECA, recombina 96.1 0.0044 1.5E-07 63.6 4.9 41 211-251 60-100 (349)
150 2z4s_A Chromosomal replication 96.1 0.011 3.7E-07 62.9 8.1 36 213-248 131-168 (440)
151 3t15_A Ribulose bisphosphate c 96.1 0.0033 1.1E-07 63.0 3.9 32 213-247 37-68 (293)
152 4b4t_M 26S protease regulatory 96.1 0.0029 1E-07 66.5 3.6 33 213-248 216-248 (434)
153 4fcw_A Chaperone protein CLPB; 96.1 0.0044 1.5E-07 62.3 4.8 34 213-246 48-81 (311)
154 2px0_A Flagellar biosynthesis 96.0 0.006 2E-07 61.1 5.5 36 212-247 105-141 (296)
155 1u94_A RECA protein, recombina 96.0 0.005 1.7E-07 63.3 5.0 40 211-250 62-101 (356)
156 3b9p_A CG5977-PA, isoform A; A 96.0 0.0047 1.6E-07 61.8 4.7 24 212-235 54-77 (297)
157 4b4t_K 26S protease regulatory 96.0 0.0033 1.1E-07 66.1 3.6 32 214-248 208-239 (428)
158 2r44_A Uncharacterized protein 96.0 0.0041 1.4E-07 63.4 4.0 37 200-236 34-70 (331)
159 4b4t_J 26S protease regulatory 96.0 0.0035 1.2E-07 65.0 3.5 33 213-248 183-215 (405)
160 1w36_C RECC, exodeoxyribonucle 95.9 0.0045 1.6E-07 73.6 4.8 77 548-624 656-757 (1122)
161 4b4t_L 26S protease subunit RP 95.9 0.0037 1.3E-07 65.8 3.6 33 213-248 216-248 (437)
162 1hqc_A RUVB; extended AAA-ATPa 95.9 0.031 1.1E-06 56.4 10.2 61 213-276 39-102 (324)
163 1xp8_A RECA protein, recombina 95.9 0.0062 2.1E-07 62.8 4.9 49 211-259 73-121 (366)
164 2j37_W Signal recognition part 95.9 0.012 3.9E-07 63.3 7.1 56 214-269 103-161 (504)
165 4a1f_A DNAB helicase, replicat 95.8 0.0096 3.3E-07 60.5 6.1 49 211-260 45-93 (338)
166 3u61_B DNA polymerase accessor 95.8 0.0086 3E-07 60.7 5.9 50 197-249 30-82 (324)
167 3eie_A Vacuolar protein sortin 95.8 0.0087 3E-07 60.7 5.8 23 213-235 52-74 (322)
168 1sxj_D Activator 1 41 kDa subu 95.8 0.0053 1.8E-07 63.0 4.1 38 200-237 44-83 (353)
169 3cf0_A Transitional endoplasmi 95.8 0.0084 2.9E-07 60.2 5.4 24 212-235 49-72 (301)
170 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0088 3E-07 60.7 5.4 24 213-236 46-69 (322)
171 4b4t_I 26S protease regulatory 95.7 0.005 1.7E-07 64.1 3.6 32 213-247 217-248 (437)
172 3hws_A ATP-dependent CLP prote 95.7 0.008 2.7E-07 62.1 5.2 25 212-236 51-75 (363)
173 1in4_A RUVB, holliday junction 95.7 0.0072 2.5E-07 61.7 4.7 24 213-236 52-75 (334)
174 1lv7_A FTSH; alpha/beta domain 95.7 0.0082 2.8E-07 58.6 5.0 24 213-236 46-69 (257)
175 1p9r_A General secretion pathw 95.7 0.011 3.8E-07 62.0 6.1 51 196-246 150-201 (418)
176 2qby_A CDC6 homolog 1, cell di 95.7 0.012 4E-07 61.0 6.2 49 198-246 25-82 (386)
177 1nks_A Adenylate kinase; therm 95.7 0.0092 3.2E-07 55.1 4.8 33 214-246 3-35 (194)
178 2z0h_A DTMP kinase, thymidylat 95.7 0.011 3.8E-07 54.9 5.4 33 214-246 2-34 (197)
179 1iqp_A RFCS; clamp loader, ext 95.6 0.011 3.7E-07 59.8 5.6 40 198-237 30-71 (327)
180 1fnn_A CDC6P, cell division co 95.6 0.013 4.3E-07 60.9 6.3 49 198-246 22-79 (389)
181 3uk6_A RUVB-like 2; hexameric 95.6 0.011 3.8E-07 61.0 5.8 25 213-237 71-95 (368)
182 1sxj_A Activator 1 95 kDa subu 95.6 0.015 5E-07 63.2 6.8 31 213-246 78-108 (516)
183 4b4t_H 26S protease regulatory 95.6 0.0054 1.8E-07 64.5 3.2 33 213-248 244-276 (467)
184 1c4o_A DNA nucleotide excision 95.6 0.027 9.4E-07 63.0 9.1 65 196-263 8-76 (664)
185 2yvu_A Probable adenylyl-sulfa 95.5 0.013 4.3E-07 54.1 5.3 35 213-247 14-48 (186)
186 2qp9_X Vacuolar protein sortin 95.5 0.01 3.4E-07 61.2 5.0 24 213-236 85-108 (355)
187 3pvs_A Replication-associated 95.5 0.012 4.2E-07 62.5 5.7 24 213-236 51-74 (447)
188 3bgw_A DNAB-like replicative h 95.5 0.013 4.4E-07 62.2 5.8 49 211-260 196-244 (444)
189 3kb2_A SPBC2 prophage-derived 95.5 0.0081 2.8E-07 54.4 3.7 23 214-236 3-25 (173)
190 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0094 3.2E-07 59.7 4.4 34 212-248 123-156 (331)
191 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.013 4.3E-07 57.5 5.3 35 213-247 5-39 (260)
192 2cvh_A DNA repair and recombin 95.5 0.012 4.1E-07 55.7 5.0 36 211-249 19-54 (220)
193 3pfi_A Holliday junction ATP-d 95.4 0.036 1.2E-06 56.4 8.8 23 213-235 56-78 (338)
194 3p32_A Probable GTPase RV1496/ 95.4 0.017 5.7E-07 59.5 6.2 37 213-249 80-116 (355)
195 2z43_A DNA repair and recombin 95.4 0.0096 3.3E-07 60.5 4.2 40 211-250 106-151 (324)
196 2zan_A Vacuolar protein sortin 95.4 0.019 6.7E-07 60.9 6.8 24 213-236 168-191 (444)
197 1d2n_A N-ethylmaleimide-sensit 95.4 0.0082 2.8E-07 59.2 3.6 23 213-235 65-87 (272)
198 2r6a_A DNAB helicase, replicat 95.4 0.018 6.2E-07 61.4 6.5 49 211-260 202-251 (454)
199 2r62_A Cell division protease 95.4 0.0052 1.8E-07 60.5 2.1 23 214-236 46-68 (268)
200 1nlf_A Regulatory protein REPA 95.4 0.018 6.3E-07 56.9 6.1 49 211-260 29-87 (279)
201 1cr0_A DNA primase/helicase; R 95.4 0.016 5.4E-07 57.9 5.6 49 211-260 34-83 (296)
202 1qhx_A CPT, protein (chloramph 95.3 0.0086 2.9E-07 54.7 3.3 24 213-236 4-27 (178)
203 2c9o_A RUVB-like 1; hexameric 95.3 0.017 5.9E-07 61.6 6.0 24 213-236 64-87 (456)
204 1np6_A Molybdopterin-guanine d 95.3 0.019 6.4E-07 52.5 5.4 37 212-248 6-42 (174)
205 2pbr_A DTMP kinase, thymidylat 95.3 0.017 5.9E-07 53.4 5.3 33 214-246 2-34 (195)
206 2chq_A Replication factor C sm 95.3 0.013 4.4E-07 59.0 4.7 41 198-238 22-64 (319)
207 1u0j_A DNA replication protein 95.3 0.024 8E-07 55.3 6.2 41 195-235 82-127 (267)
208 3d8b_A Fidgetin-like protein 1 95.2 0.014 4.9E-07 60.1 4.8 24 212-235 117-140 (357)
209 1jr3_A DNA polymerase III subu 95.2 0.017 5.9E-07 59.5 5.4 40 198-237 21-63 (373)
210 1yrb_A ATP(GTP)binding protein 95.2 0.014 4.9E-07 56.9 4.6 35 212-247 14-48 (262)
211 1q57_A DNA primase/helicase; d 95.2 0.014 4.7E-07 63.3 4.7 49 211-260 241-290 (503)
212 3vaa_A Shikimate kinase, SK; s 95.2 0.014 4.7E-07 54.6 4.1 25 212-236 25-49 (199)
213 1ojl_A Transcriptional regulat 95.1 0.011 3.6E-07 59.6 3.5 25 211-235 24-48 (304)
214 1sxj_B Activator 1 37 kDa subu 95.1 0.02 6.7E-07 57.7 5.5 41 198-238 26-68 (323)
215 3trf_A Shikimate kinase, SK; a 95.1 0.014 4.8E-07 53.6 4.1 25 212-236 5-29 (185)
216 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.014 4.7E-07 62.8 4.4 33 203-235 32-64 (500)
217 1kht_A Adenylate kinase; phosp 95.1 0.013 4.4E-07 54.1 3.7 28 213-240 4-31 (192)
218 2ehv_A Hypothetical protein PH 95.1 0.021 7.1E-07 55.2 5.3 39 211-249 29-68 (251)
219 1ly1_A Polynucleotide kinase; 95.1 0.012 4.1E-07 53.7 3.4 21 214-234 4-24 (181)
220 3vfd_A Spastin; ATPase, microt 95.0 0.019 6.5E-07 59.9 5.3 23 213-235 149-171 (389)
221 2x8a_A Nuclear valosin-contain 95.0 0.01 3.5E-07 58.7 3.1 21 215-235 47-67 (274)
222 2q6t_A DNAB replication FORK h 95.0 0.027 9.1E-07 59.9 6.4 50 211-261 199-249 (444)
223 3lw7_A Adenylate kinase relate 95.0 0.012 4.2E-07 53.2 3.2 20 213-232 2-21 (179)
224 1v5w_A DMC1, meiotic recombina 95.0 0.015 5E-07 59.6 4.1 49 212-260 122-177 (343)
225 2rhm_A Putative kinase; P-loop 95.0 0.014 4.9E-07 53.9 3.7 24 213-236 6-29 (193)
226 1w5s_A Origin recognition comp 94.9 0.023 7.9E-07 59.4 5.7 27 212-238 50-78 (412)
227 3iij_A Coilin-interacting nucl 94.9 0.017 5.8E-07 52.9 3.9 25 212-236 11-35 (180)
228 3e70_C DPA, signal recognition 94.9 0.023 8E-07 57.5 5.3 56 212-267 129-187 (328)
229 2plr_A DTMP kinase, probable t 94.9 0.029 1E-06 52.6 5.6 30 213-243 5-34 (213)
230 3umf_A Adenylate kinase; rossm 94.8 0.011 3.9E-07 56.0 2.6 25 212-236 29-53 (217)
231 1nn5_A Similar to deoxythymidy 94.8 0.03 1E-06 52.7 5.6 35 212-246 9-43 (215)
232 1ixz_A ATP-dependent metallopr 94.8 0.013 4.4E-07 57.1 3.0 21 215-235 52-72 (254)
233 3pxg_A Negative regulator of g 94.7 0.029 1E-06 60.0 5.8 40 199-238 186-227 (468)
234 3b9q_A Chloroplast SRP recepto 94.7 0.027 9.4E-07 56.4 5.2 35 213-247 101-135 (302)
235 1g8p_A Magnesium-chelatase 38 94.7 0.015 5.1E-07 59.5 3.3 25 212-236 45-69 (350)
236 1um8_A ATP-dependent CLP prote 94.7 0.015 5.3E-07 60.2 3.4 25 212-236 72-96 (376)
237 1rj9_A FTSY, signal recognitio 94.7 0.03 1E-06 56.2 5.3 37 212-248 102-138 (304)
238 3cm0_A Adenylate kinase; ATP-b 94.7 0.02 6.7E-07 52.7 3.7 23 214-236 6-28 (186)
239 2iyv_A Shikimate kinase, SK; t 94.7 0.02 6.8E-07 52.6 3.8 24 213-236 3-26 (184)
240 3bfv_A CAPA1, CAPB2, membrane 94.7 0.059 2E-06 53.0 7.4 35 213-247 83-118 (271)
241 3sr0_A Adenylate kinase; phosp 94.7 0.02 6.8E-07 53.9 3.8 22 214-235 2-23 (206)
242 3ug7_A Arsenical pump-driving 94.7 0.028 9.6E-07 57.6 5.2 46 213-260 27-72 (349)
243 1n0w_A DNA repair protein RAD5 94.6 0.023 7.8E-07 54.7 4.3 40 211-250 23-68 (243)
244 3bs4_A Uncharacterized protein 94.6 0.022 7.5E-07 55.5 4.1 52 212-264 21-72 (260)
245 1tev_A UMP-CMP kinase; ploop, 94.6 0.02 6.9E-07 52.9 3.7 24 213-236 4-27 (196)
246 2c95_A Adenylate kinase 1; tra 94.6 0.025 8.5E-07 52.4 4.3 25 212-236 9-33 (196)
247 1sxj_E Activator 1 40 kDa subu 94.6 0.022 7.5E-07 58.4 4.3 42 198-239 19-63 (354)
248 1kag_A SKI, shikimate kinase I 94.6 0.018 6.2E-07 52.2 3.3 23 213-235 5-27 (173)
249 1via_A Shikimate kinase; struc 94.6 0.02 6.7E-07 52.2 3.5 23 214-236 6-28 (175)
250 2cdn_A Adenylate kinase; phosp 94.6 0.021 7.1E-07 53.4 3.7 23 214-236 22-44 (201)
251 3cmu_A Protein RECA, recombina 94.6 0.047 1.6E-06 67.4 7.6 41 211-251 1426-1466(2050)
252 2ze6_A Isopentenyl transferase 94.6 0.02 7E-07 55.8 3.7 23 214-236 3-25 (253)
253 3zq6_A Putative arsenical pump 94.5 0.031 1.1E-06 56.7 5.2 37 213-249 15-51 (324)
254 2wwf_A Thymidilate kinase, put 94.5 0.034 1.2E-06 52.2 5.2 32 212-243 10-41 (212)
255 1zuh_A Shikimate kinase; alpha 94.5 0.024 8.2E-07 51.2 3.9 24 213-236 8-31 (168)
256 4edh_A DTMP kinase, thymidylat 94.5 0.033 1.1E-06 52.7 5.0 35 212-246 6-40 (213)
257 3fb4_A Adenylate kinase; psych 94.5 0.022 7.6E-07 53.8 3.8 22 215-236 3-24 (216)
258 3t61_A Gluconokinase; PSI-biol 94.4 0.022 7.6E-07 53.2 3.5 24 213-236 19-42 (202)
259 2bwj_A Adenylate kinase 5; pho 94.4 0.023 7.9E-07 52.7 3.6 25 212-236 12-36 (199)
260 1qf9_A UMP/CMP kinase, protein 94.4 0.024 8.1E-07 52.3 3.7 24 213-236 7-30 (194)
261 3jvv_A Twitching mobility prot 94.4 0.034 1.2E-06 57.0 5.1 36 211-246 122-158 (356)
262 3uie_A Adenylyl-sulfate kinase 94.4 0.05 1.7E-06 50.7 5.9 47 194-242 9-55 (200)
263 1e6c_A Shikimate kinase; phosp 94.4 0.024 8.1E-07 51.4 3.5 23 214-236 4-26 (173)
264 1iy2_A ATP-dependent metallopr 94.4 0.019 6.4E-07 56.8 3.0 21 215-235 76-96 (278)
265 3u4q_B ATP-dependent helicase/ 94.4 0.033 1.1E-06 66.8 5.7 75 548-622 585-692 (1166)
266 1zak_A Adenylate kinase; ATP:A 94.4 0.026 8.7E-07 53.7 3.8 24 213-236 6-29 (222)
267 1gvn_B Zeta; postsegregational 94.3 0.019 6.6E-07 57.1 3.0 22 214-235 35-56 (287)
268 1zp6_A Hypothetical protein AT 94.3 0.021 7.2E-07 52.7 3.1 23 212-234 9-31 (191)
269 2qen_A Walker-type ATPase; unk 94.3 0.038 1.3E-06 56.2 5.3 38 199-236 18-55 (350)
270 4eun_A Thermoresistant glucoki 94.3 0.03 1E-06 52.3 4.1 25 212-236 29-53 (200)
271 2og2_A Putative signal recogni 94.3 0.04 1.4E-06 56.4 5.3 35 213-247 158-192 (359)
272 2jaq_A Deoxyguanosine kinase; 94.3 0.027 9.2E-07 52.5 3.7 23 214-236 2-24 (205)
273 1gtv_A TMK, thymidylate kinase 94.2 0.014 4.8E-07 55.0 1.7 33 214-246 2-34 (214)
274 1aky_A Adenylate kinase; ATP:A 94.2 0.027 9.2E-07 53.5 3.7 24 213-236 5-28 (220)
275 1c9k_A COBU, adenosylcobinamid 94.2 0.012 4.1E-07 53.9 1.1 46 214-263 1-46 (180)
276 3dl0_A Adenylate kinase; phosp 94.2 0.022 7.5E-07 53.9 3.1 21 215-235 3-23 (216)
277 3cio_A ETK, tyrosine-protein k 94.2 0.079 2.7E-06 52.9 7.3 35 213-247 105-140 (299)
278 2fna_A Conserved hypothetical 94.2 0.042 1.4E-06 56.0 5.3 36 199-236 19-54 (357)
279 2pez_A Bifunctional 3'-phospho 94.2 0.049 1.7E-06 49.7 5.3 34 213-246 6-39 (179)
280 2oap_1 GSPE-2, type II secreti 94.1 0.032 1.1E-06 60.2 4.5 48 197-245 245-292 (511)
281 1rz3_A Hypothetical protein rb 94.1 0.048 1.6E-06 51.0 5.2 34 213-246 23-56 (201)
282 1y63_A LMAJ004144AAA protein; 94.1 0.032 1.1E-06 51.3 3.9 24 212-235 10-33 (184)
283 1g41_A Heat shock protein HSLU 94.1 0.043 1.5E-06 57.7 5.3 24 213-236 51-74 (444)
284 1m7g_A Adenylylsulfate kinase; 94.1 0.074 2.5E-06 50.0 6.6 50 196-247 11-61 (211)
285 1knq_A Gluconate kinase; ALFA/ 94.1 0.031 1.1E-06 50.8 3.8 24 213-236 9-32 (175)
286 4ag6_A VIRB4 ATPase, type IV s 94.1 0.04 1.4E-06 57.4 5.1 58 211-272 34-91 (392)
287 2p5t_B PEZT; postsegregational 94.1 0.036 1.2E-06 53.9 4.4 23 214-236 34-56 (253)
288 2vli_A Antibiotic resistance p 94.1 0.019 6.4E-07 52.6 2.1 23 213-235 6-28 (183)
289 4eaq_A DTMP kinase, thymidylat 94.0 0.037 1.3E-06 53.0 4.3 33 213-246 27-59 (229)
290 2xb4_A Adenylate kinase; ATP-b 94.0 0.031 1.1E-06 53.2 3.7 23 214-236 2-24 (223)
291 3tlx_A Adenylate kinase 2; str 94.0 0.031 1.1E-06 54.0 3.7 23 214-236 31-53 (243)
292 2pt5_A Shikimate kinase, SK; a 94.0 0.034 1.2E-06 50.0 3.7 23 214-236 2-24 (168)
293 2i1q_A DNA repair and recombin 93.9 0.025 8.5E-07 57.3 2.9 50 211-260 97-163 (322)
294 2qor_A Guanylate kinase; phosp 93.9 0.029 9.9E-07 52.6 3.2 26 211-236 11-36 (204)
295 2yhs_A FTSY, cell division pro 93.9 0.051 1.7E-06 57.8 5.3 34 213-246 294-327 (503)
296 1ak2_A Adenylate kinase isoenz 93.9 0.034 1.2E-06 53.3 3.7 24 213-236 17-40 (233)
297 1e9r_A Conjugal transfer prote 93.9 0.052 1.8E-06 57.4 5.5 43 212-254 53-95 (437)
298 1zd8_A GTP:AMP phosphotransfer 93.9 0.027 9.1E-07 53.8 2.9 23 213-235 8-30 (227)
299 1ukz_A Uridylate kinase; trans 93.8 0.029 9.9E-07 52.4 3.1 22 214-235 17-38 (203)
300 3tau_A Guanylate kinase, GMP k 93.8 0.037 1.3E-06 52.1 3.8 24 212-235 8-31 (208)
301 2www_A Methylmalonic aciduria 93.8 0.055 1.9E-06 55.4 5.3 36 213-248 75-110 (349)
302 3be4_A Adenylate kinase; malar 93.8 0.035 1.2E-06 52.5 3.6 23 214-236 7-29 (217)
303 2ewv_A Twitching motility prot 93.8 0.05 1.7E-06 56.2 5.0 37 211-247 135-172 (372)
304 1ye8_A Protein THEP1, hypothet 93.8 0.039 1.3E-06 50.6 3.7 23 214-236 2-24 (178)
305 3iqw_A Tail-anchored protein t 93.8 0.048 1.7E-06 55.4 4.8 38 212-249 16-53 (334)
306 3v9p_A DTMP kinase, thymidylat 93.8 0.046 1.6E-06 52.2 4.3 35 212-246 25-63 (227)
307 2bdt_A BH3686; alpha-beta prot 93.8 0.033 1.1E-06 51.3 3.2 21 214-234 4-24 (189)
308 1e4v_A Adenylate kinase; trans 93.8 0.035 1.2E-06 52.4 3.5 22 215-236 3-24 (214)
309 2eyu_A Twitching motility prot 93.7 0.059 2E-06 52.7 5.1 38 210-247 23-61 (261)
310 3hu3_A Transitional endoplasmi 93.7 0.043 1.5E-06 58.9 4.3 23 213-235 239-261 (489)
311 1ihu_A Arsenical pump-driving 93.7 0.06 2.1E-06 59.4 5.6 38 212-249 8-45 (589)
312 2woo_A ATPase GET3; tail-ancho 93.7 0.06 2.1E-06 54.6 5.2 37 212-248 19-55 (329)
313 2ce7_A Cell division protein F 93.6 0.035 1.2E-06 59.2 3.5 24 213-236 50-73 (476)
314 2qm8_A GTPase/ATPase; G protei 93.6 0.061 2.1E-06 54.8 5.3 37 212-248 55-91 (337)
315 3lv8_A DTMP kinase, thymidylat 93.6 0.066 2.3E-06 51.4 5.2 31 212-242 27-57 (236)
316 1byi_A Dethiobiotin synthase; 93.6 0.068 2.3E-06 50.6 5.3 35 214-248 4-38 (224)
317 2wsm_A Hydrogenase expression/ 93.6 0.067 2.3E-06 50.5 5.2 46 200-246 16-63 (221)
318 2bbw_A Adenylate kinase 4, AK4 93.6 0.046 1.6E-06 52.8 4.0 25 212-236 27-51 (246)
319 2o0j_A Terminase, DNA packagin 93.5 0.17 6E-06 52.2 8.4 66 195-261 162-229 (385)
320 3pxi_A Negative regulator of g 93.5 0.065 2.2E-06 61.1 5.7 39 198-236 185-225 (758)
321 2v54_A DTMP kinase, thymidylat 93.5 0.031 1.1E-06 52.1 2.5 32 213-246 5-36 (204)
322 2d7d_A Uvrabc system protein B 93.5 0.15 5.2E-06 56.9 8.5 65 196-263 12-80 (661)
323 4tmk_A Protein (thymidylate ki 93.5 0.075 2.6E-06 50.2 5.2 41 213-253 4-46 (213)
324 1kgd_A CASK, peripheral plasma 93.4 0.054 1.8E-06 49.6 4.0 24 212-235 5-28 (180)
325 1qvr_A CLPB protein; coiled co 93.3 0.097 3.3E-06 60.5 6.9 48 200-247 177-233 (854)
326 3pxi_A Negative regulator of g 93.3 0.08 2.7E-06 60.3 6.1 33 214-246 523-555 (758)
327 3io3_A DEHA2D07832P; chaperone 93.3 0.07 2.4E-06 54.5 5.0 38 212-249 18-57 (348)
328 2p67_A LAO/AO transport system 93.3 0.074 2.5E-06 54.2 5.2 36 213-248 57-92 (341)
329 3tr0_A Guanylate kinase, GMP k 93.2 0.057 2E-06 50.3 4.0 24 212-235 7-30 (205)
330 3cpe_A Terminase, DNA packagin 93.2 0.24 8.2E-06 54.5 9.6 67 194-261 161-229 (592)
331 2oze_A ORF delta'; para, walke 93.2 0.14 4.9E-06 50.8 7.2 33 214-246 37-71 (298)
332 1hyq_A MIND, cell division inh 93.2 0.084 2.9E-06 51.4 5.3 34 214-247 5-38 (263)
333 2ph1_A Nucleotide-binding prot 93.2 0.076 2.6E-06 51.8 5.0 35 213-247 20-54 (262)
334 2j41_A Guanylate kinase; GMP, 93.2 0.056 1.9E-06 50.4 3.8 24 212-235 6-29 (207)
335 1ex7_A Guanylate kinase; subst 93.2 0.056 1.9E-06 49.8 3.6 23 213-235 2-24 (186)
336 3k1j_A LON protease, ATP-depen 93.1 0.077 2.6E-06 58.7 5.4 38 199-236 47-84 (604)
337 3kjh_A CO dehydrogenase/acetyl 93.1 0.046 1.6E-06 52.7 3.2 32 217-248 5-36 (254)
338 3q9l_A Septum site-determining 93.1 0.082 2.8E-06 51.3 4.9 34 214-247 5-38 (260)
339 2afh_E Nitrogenase iron protei 93.0 0.086 2.9E-06 52.3 5.2 32 215-246 5-36 (289)
340 3m6a_A ATP-dependent protease 93.0 0.057 1.9E-06 58.9 4.1 25 212-236 108-132 (543)
341 1cp2_A CP2, nitrogenase iron p 93.0 0.081 2.8E-06 51.7 4.8 32 215-246 4-35 (269)
342 1g3q_A MIND ATPase, cell divis 93.0 0.087 3E-06 50.3 4.9 35 214-248 5-39 (237)
343 2woj_A ATPase GET3; tail-ancho 93.0 0.084 2.9E-06 54.1 5.0 39 212-250 18-58 (354)
344 1cke_A CK, MSSA, protein (cyti 92.9 0.062 2.1E-06 51.0 3.7 24 213-236 6-29 (227)
345 3cf2_A TER ATPase, transitiona 92.9 0.034 1.1E-06 63.0 2.0 22 214-235 240-261 (806)
346 1tf7_A KAIC; homohexamer, hexa 92.8 0.089 3E-06 57.1 5.3 49 211-260 280-328 (525)
347 3c8u_A Fructokinase; YP_612366 92.8 0.11 3.9E-06 48.6 5.4 28 213-240 23-50 (208)
348 1jjv_A Dephospho-COA kinase; P 92.8 0.057 1.9E-06 50.5 3.2 21 214-234 4-24 (206)
349 2dhr_A FTSH; AAA+ protein, hex 92.8 0.048 1.6E-06 58.5 3.0 22 214-235 66-87 (499)
350 3end_A Light-independent proto 92.8 0.096 3.3E-06 52.4 5.1 34 214-247 43-76 (307)
351 3hjn_A DTMP kinase, thymidylat 92.7 0.12 4.1E-06 48.1 5.4 34 214-247 2-35 (197)
352 3cmw_A Protein RECA, recombina 92.7 0.08 2.7E-06 64.5 5.1 50 211-260 382-431 (1706)
353 3b85_A Phosphate starvation-in 92.7 0.12 4.1E-06 48.6 5.3 38 197-235 8-45 (208)
354 1r6b_X CLPA protein; AAA+, N-t 92.7 0.11 3.9E-06 59.1 6.1 41 198-238 191-233 (758)
355 4gp7_A Metallophosphoesterase; 92.6 0.05 1.7E-06 49.4 2.5 20 212-231 9-28 (171)
356 3a00_A Guanylate kinase, GMP k 92.5 0.061 2.1E-06 49.5 3.0 24 213-236 2-25 (186)
357 3cmw_A Protein RECA, recombina 92.5 0.087 3E-06 64.2 5.1 50 211-260 33-82 (1706)
358 4a74_A DNA repair and recombin 92.5 0.08 2.7E-06 50.2 3.9 27 211-237 24-50 (231)
359 3cwq_A Para family chromosome 92.5 0.11 3.8E-06 48.8 4.8 32 214-246 3-34 (209)
360 3la6_A Tyrosine-protein kinase 92.5 0.18 6.1E-06 49.9 6.5 34 214-247 95-128 (286)
361 3ld9_A DTMP kinase, thymidylat 92.4 0.12 4.1E-06 49.0 5.0 33 213-245 22-55 (223)
362 2i3b_A HCR-ntpase, human cance 92.4 0.079 2.7E-06 49.0 3.5 33 213-247 2-34 (189)
363 2hf9_A Probable hydrogenase ni 92.3 0.13 4.6E-06 48.5 5.3 46 199-245 23-70 (226)
364 3ake_A Cytidylate kinase; CMP 92.2 0.095 3.3E-06 48.8 4.0 24 213-236 3-26 (208)
365 1svm_A Large T antigen; AAA+ f 92.2 0.096 3.3E-06 54.0 4.3 25 211-235 168-192 (377)
366 3ea0_A ATPase, para family; al 92.2 0.11 3.7E-06 49.9 4.5 35 214-248 7-42 (245)
367 3igf_A ALL4481 protein; two-do 92.2 0.076 2.6E-06 54.7 3.4 35 214-248 4-38 (374)
368 3lda_A DNA repair protein RAD5 92.2 0.095 3.3E-06 54.5 4.2 39 211-249 177-221 (400)
369 3r20_A Cytidylate kinase; stru 92.1 0.091 3.1E-06 50.3 3.7 25 212-236 9-33 (233)
370 2if2_A Dephospho-COA kinase; a 92.0 0.085 2.9E-06 49.1 3.3 21 214-234 3-23 (204)
371 1uj2_A Uridine-cytidine kinase 91.9 0.081 2.8E-06 51.3 3.2 23 214-236 24-46 (252)
372 1qvr_A CLPB protein; coiled co 91.9 0.1 3.6E-06 60.2 4.5 31 213-243 589-619 (854)
373 3crm_A TRNA delta(2)-isopenten 91.8 0.081 2.8E-06 53.2 3.0 24 213-236 6-29 (323)
374 1ltq_A Polynucleotide kinase; 91.8 0.089 3.1E-06 52.4 3.4 21 214-234 4-24 (301)
375 1lvg_A Guanylate kinase, GMP k 91.7 0.11 3.6E-06 48.4 3.7 25 212-236 4-28 (198)
376 2grj_A Dephospho-COA kinase; T 91.7 0.11 3.8E-06 48.1 3.8 22 214-235 14-35 (192)
377 1pzn_A RAD51, DNA repair and r 91.7 0.11 3.7E-06 53.2 3.9 26 211-236 130-155 (349)
378 3cmu_A Protein RECA, recombina 91.7 0.13 4.5E-06 63.5 5.3 45 211-255 1080-1124(2050)
379 3ney_A 55 kDa erythrocyte memb 91.7 0.12 4.2E-06 47.9 4.0 24 212-235 19-42 (197)
380 2qmh_A HPR kinase/phosphorylas 91.6 0.096 3.3E-06 48.5 3.1 23 213-235 35-57 (205)
381 3fkq_A NTRC-like two-domain pr 91.5 0.14 4.7E-06 52.9 4.6 36 214-249 146-181 (373)
382 1wcv_1 SOJ, segregation protei 91.5 0.11 3.6E-06 50.6 3.5 34 214-247 9-42 (257)
383 1r6b_X CLPA protein; AAA+, N-t 91.4 0.17 5.9E-06 57.6 5.7 30 214-246 490-519 (758)
384 2qt1_A Nicotinamide riboside k 91.4 0.1 3.4E-06 48.9 3.1 22 213-234 22-43 (207)
385 1f2t_A RAD50 ABC-ATPase; DNA d 91.4 0.13 4.3E-06 45.5 3.6 25 212-236 23-47 (149)
386 3k9g_A PF-32 protein; ssgcid, 91.4 0.11 3.8E-06 50.7 3.6 33 214-247 30-62 (267)
387 3cf2_A TER ATPase, transitiona 91.4 0.064 2.2E-06 60.7 2.0 22 214-235 513-534 (806)
388 3pg5_A Uncharacterized protein 91.3 0.094 3.2E-06 53.9 3.0 34 214-247 4-37 (361)
389 2xj4_A MIPZ; replication, cell 91.1 0.16 5.3E-06 50.3 4.4 33 214-246 7-39 (286)
390 2v9p_A Replication protein E1; 91.1 0.18 6.1E-06 50.3 4.7 34 211-247 125-158 (305)
391 1uf9_A TT1252 protein; P-loop, 91.0 0.12 4.2E-06 47.8 3.3 22 213-234 9-30 (203)
392 1sq5_A Pantothenate kinase; P- 91.0 0.24 8.3E-06 49.6 5.6 34 213-246 81-116 (308)
393 3nwj_A ATSK2; P loop, shikimat 90.9 0.15 5.1E-06 49.4 3.9 25 212-236 48-72 (250)
394 3fwy_A Light-independent proto 90.9 0.22 7.5E-06 50.0 5.3 36 213-248 49-84 (314)
395 1z6g_A Guanylate kinase; struc 90.9 0.13 4.5E-06 48.6 3.4 28 209-236 20-47 (218)
396 3asz_A Uridine kinase; cytidin 90.9 0.14 4.9E-06 47.9 3.7 23 213-235 7-29 (211)
397 1vht_A Dephospho-COA kinase; s 90.6 0.14 4.9E-06 48.2 3.4 21 214-234 6-26 (218)
398 2ga8_A Hypothetical 39.9 kDa p 90.6 0.2 7E-06 50.8 4.6 23 214-236 26-48 (359)
399 3f9v_A Minichromosome maintena 90.5 0.11 3.9E-06 57.1 2.9 20 214-233 329-348 (595)
400 3tqc_A Pantothenate kinase; bi 90.5 0.25 8.7E-06 49.6 5.3 34 214-248 94-130 (321)
401 3lnc_A Guanylate kinase, GMP k 90.5 0.071 2.4E-06 50.9 1.1 23 211-233 26-48 (231)
402 1nij_A Hypothetical protein YJ 90.4 0.12 4.1E-06 52.1 2.8 35 213-249 5-39 (318)
403 2pt7_A CAG-ALFA; ATPase, prote 90.4 0.11 3.9E-06 52.6 2.6 44 202-245 161-204 (330)
404 3d3q_A TRNA delta(2)-isopenten 90.4 0.14 4.8E-06 51.8 3.2 24 213-236 8-31 (340)
405 3tqf_A HPR(Ser) kinase; transf 90.4 0.22 7.5E-06 44.9 4.1 21 214-234 18-38 (181)
406 2gza_A Type IV secretion syste 90.4 0.15 5.2E-06 52.3 3.6 32 204-235 167-198 (361)
407 3gmt_A Adenylate kinase; ssgci 90.3 0.14 4.9E-06 48.6 3.1 22 215-236 11-32 (230)
408 3ice_A Transcription terminati 90.2 0.63 2.2E-05 47.7 7.8 62 199-260 159-226 (422)
409 4e22_A Cytidylate kinase; P-lo 90.1 0.17 5.9E-06 49.0 3.6 24 212-235 27-50 (252)
410 2f6r_A COA synthase, bifunctio 90.1 0.15 5.1E-06 50.4 3.1 20 214-233 77-96 (281)
411 2jeo_A Uridine-cytidine kinase 90.1 0.18 6.2E-06 48.6 3.6 24 213-236 26-49 (245)
412 3kta_A Chromosome segregation 90.0 0.18 6.1E-06 45.9 3.4 24 212-235 26-49 (182)
413 3exa_A TRNA delta(2)-isopenten 90.0 0.13 4.5E-06 51.2 2.6 25 212-236 3-27 (322)
414 1tf7_A KAIC; homohexamer, hexa 90.0 0.33 1.1E-05 52.5 6.1 39 211-249 38-77 (525)
415 3zvl_A Bifunctional polynucleo 90.0 0.12 4E-06 54.3 2.4 23 212-234 258-280 (416)
416 3ez2_A Plasmid partition prote 90.0 0.2 6.8E-06 52.2 4.2 52 197-248 84-151 (398)
417 3tmk_A Thymidylate kinase; pho 89.9 0.19 6.6E-06 47.4 3.6 26 212-237 5-30 (216)
418 4akg_A Glutathione S-transfera 89.8 0.23 8E-06 63.4 5.2 33 203-235 1258-1290(2695)
419 1x6v_B Bifunctional 3'-phospho 89.8 0.28 9.6E-06 53.8 5.3 57 190-246 28-86 (630)
420 1htw_A HI0065; nucleotide-bind 89.8 0.14 4.6E-06 45.9 2.3 34 211-245 32-65 (158)
421 1znw_A Guanylate kinase, GMP k 89.7 0.2 7E-06 46.8 3.6 25 211-235 19-43 (207)
422 3foz_A TRNA delta(2)-isopenten 89.7 0.15 5.3E-06 50.6 2.8 24 213-236 11-34 (316)
423 3qks_A DNA double-strand break 89.6 0.21 7.3E-06 46.6 3.6 26 212-237 23-48 (203)
424 3a8t_A Adenylate isopentenyltr 89.6 0.12 4.2E-06 52.0 2.0 24 213-236 41-64 (339)
425 4hlc_A DTMP kinase, thymidylat 89.5 0.45 1.6E-05 44.4 5.8 33 214-247 4-36 (205)
426 1q3t_A Cytidylate kinase; nucl 89.5 0.25 8.7E-06 47.2 4.2 24 213-236 17-40 (236)
427 1ypw_A Transitional endoplasmi 89.5 0.14 4.9E-06 58.4 2.8 23 213-235 239-261 (806)
428 1s96_A Guanylate kinase, GMP k 89.4 0.22 7.7E-06 47.1 3.6 25 211-235 15-39 (219)
429 1a7j_A Phosphoribulokinase; tr 89.4 0.22 7.4E-06 49.5 3.6 34 213-246 6-39 (290)
430 3eph_A TRNA isopentenyltransfe 89.3 0.2 7E-06 51.7 3.5 25 212-236 2-26 (409)
431 1odf_A YGR205W, hypothetical 3 89.3 0.23 7.8E-06 49.3 3.7 26 213-238 32-57 (290)
432 1ypw_A Transitional endoplasmi 89.2 0.12 4.2E-06 59.0 2.0 24 213-236 512-535 (806)
433 1tq4_A IIGP1, interferon-induc 89.1 0.31 1.1E-05 50.8 4.7 36 199-234 56-91 (413)
434 2gks_A Bifunctional SAT/APS ki 89.0 0.51 1.7E-05 51.2 6.5 42 214-260 374-415 (546)
435 2axn_A 6-phosphofructo-2-kinas 88.8 0.37 1.3E-05 52.0 5.3 33 213-245 36-68 (520)
436 1ihu_A Arsenical pump-driving 88.7 0.37 1.3E-05 53.0 5.3 37 212-248 327-363 (589)
437 2h92_A Cytidylate kinase; ross 88.6 0.22 7.5E-06 46.8 3.0 23 213-235 4-26 (219)
438 2ocp_A DGK, deoxyguanosine kin 88.5 0.22 7.4E-06 47.8 2.9 23 214-236 4-26 (241)
439 3aez_A Pantothenate kinase; tr 88.4 0.28 9.7E-06 49.1 3.7 24 213-236 91-114 (312)
440 3ez9_A Para; DNA binding, wing 88.3 0.19 6.4E-06 52.5 2.4 52 197-248 87-154 (403)
441 1z6t_A APAF-1, apoptotic prote 87.9 0.41 1.4E-05 52.6 5.0 37 199-235 130-170 (591)
442 2f1r_A Molybdopterin-guanine d 87.8 0.37 1.3E-05 43.6 3.7 30 213-242 3-32 (171)
443 3l0o_A Transcription terminati 87.4 0.38 1.3E-05 49.3 3.9 38 202-239 163-202 (427)
444 3fdi_A Uncharacterized protein 87.4 0.34 1.2E-05 45.1 3.4 25 212-236 6-30 (201)
445 2obl_A ESCN; ATPase, hydrolase 87.3 0.52 1.8E-05 48.0 5.0 33 203-235 60-94 (347)
446 3of5_A Dethiobiotin synthetase 86.7 0.64 2.2E-05 44.2 4.9 35 214-248 6-41 (228)
447 1m8p_A Sulfate adenylyltransfe 86.5 0.56 1.9E-05 51.2 4.9 34 214-247 398-432 (573)
448 1sky_E F1-ATPase, F1-ATP synth 86.3 0.75 2.6E-05 48.5 5.6 35 204-238 141-177 (473)
449 3jux_A Protein translocase sub 86.1 1.3 4.5E-05 49.1 7.5 61 199-262 78-138 (822)
450 1p5z_B DCK, deoxycytidine kina 85.7 0.16 5.5E-06 49.5 0.2 23 213-235 25-47 (263)
451 2dyk_A GTP-binding protein; GT 85.7 0.43 1.5E-05 41.8 3.0 20 214-233 3-22 (161)
452 2f9l_A RAB11B, member RAS onco 85.6 0.43 1.5E-05 44.0 3.1 21 214-234 7-27 (199)
453 1nrj_B SR-beta, signal recogni 85.3 0.47 1.6E-05 44.3 3.2 23 212-234 12-34 (218)
454 1bif_A 6-phosphofructo-2-kinas 85.2 0.5 1.7E-05 50.3 3.7 29 213-241 40-68 (469)
455 1oix_A RAS-related protein RAB 85.2 0.45 1.5E-05 43.6 2.9 21 214-234 31-51 (191)
456 2wji_A Ferrous iron transport 85.0 0.49 1.7E-05 42.1 3.1 20 214-233 5-24 (165)
457 3qkt_A DNA double-strand break 84.9 0.53 1.8E-05 47.8 3.6 26 212-237 23-48 (339)
458 1dek_A Deoxynucleoside monopho 84.8 1.3 4.5E-05 42.3 6.1 42 214-260 3-44 (241)
459 1z2a_A RAS-related protein RAB 84.7 0.52 1.8E-05 41.6 3.1 19 215-233 8-26 (168)
460 3vkg_A Dynein heavy chain, cyt 84.5 0.48 1.7E-05 61.2 3.6 47 201-249 1293-1339(3245)
461 1kao_A RAP2A; GTP-binding prot 84.4 0.54 1.8E-05 41.3 3.0 19 215-233 6-24 (167)
462 2rcn_A Probable GTPase ENGC; Y 84.3 0.82 2.8E-05 46.6 4.6 28 205-233 209-236 (358)
463 3hdt_A Putative kinase; struct 84.2 0.65 2.2E-05 44.0 3.6 24 213-236 15-38 (223)
464 2onk_A Molybdate/tungstate ABC 84.2 0.6 2E-05 44.8 3.4 34 211-246 24-58 (240)
465 2ce2_X GTPase HRAS; signaling 84.1 0.55 1.9E-05 41.1 3.0 19 215-233 6-24 (166)
466 2ged_A SR-beta, signal recogni 84.0 0.56 1.9E-05 42.7 3.0 21 213-233 49-69 (193)
467 2pcj_A ABC transporter, lipopr 83.9 0.61 2.1E-05 44.2 3.3 35 211-246 29-64 (224)
468 1wms_A RAB-9, RAB9, RAS-relate 83.6 0.6 2.1E-05 41.7 3.0 20 214-233 9-28 (177)
469 1g16_A RAS-related protein SEC 83.5 0.6 2E-05 41.3 3.0 19 215-233 6-24 (170)
470 3sop_A Neuronal-specific septi 83.5 0.57 2E-05 45.8 3.0 23 214-236 4-26 (270)
471 1sgw_A Putative ABC transporte 83.4 0.64 2.2E-05 43.7 3.2 35 211-246 34-69 (214)
472 2cbz_A Multidrug resistance-as 83.4 0.61 2.1E-05 44.6 3.1 23 211-233 30-52 (237)
473 1ek0_A Protein (GTP-binding pr 83.3 0.64 2.2E-05 41.0 3.1 19 215-233 6-24 (170)
474 3qf7_A RAD50; ABC-ATPase, ATPa 83.3 0.69 2.4E-05 47.4 3.6 25 212-236 23-47 (365)
475 3tif_A Uncharacterized ABC tra 83.1 0.71 2.4E-05 44.1 3.4 35 211-246 30-65 (235)
476 1u8z_A RAS-related protein RAL 83.1 0.66 2.3E-05 40.8 3.1 19 215-233 7-25 (168)
477 1ky3_A GTP-binding protein YPT 83.1 0.64 2.2E-05 41.6 3.0 20 214-233 10-29 (182)
478 2erx_A GTP-binding protein DI- 82.9 0.67 2.3E-05 40.9 3.0 19 215-233 6-24 (172)
479 2yv5_A YJEQ protein; hydrolase 82.7 0.98 3.3E-05 44.9 4.4 31 202-233 156-186 (302)
480 2nzj_A GTP-binding protein REM 82.7 0.69 2.4E-05 41.1 3.0 20 214-233 6-25 (175)
481 1z0j_A RAB-22, RAS-related pro 82.6 0.7 2.4E-05 40.8 3.0 19 215-233 9-27 (170)
482 2zej_A Dardarin, leucine-rich 82.6 0.58 2E-05 42.4 2.5 20 214-233 4-23 (184)
483 3q85_A GTP-binding protein REM 82.6 0.71 2.4E-05 40.8 3.1 19 215-233 5-23 (169)
484 2d2e_A SUFC protein; ABC-ATPas 82.4 0.83 2.8E-05 44.1 3.6 24 211-234 28-51 (250)
485 1r2q_A RAS-related protein RAB 82.3 0.74 2.5E-05 40.6 3.1 19 215-233 9-27 (170)
486 1svi_A GTP-binding protein YSX 82.3 0.67 2.3E-05 42.2 2.9 21 213-233 24-44 (195)
487 1z08_A RAS-related protein RAB 82.3 0.73 2.5E-05 40.7 3.0 20 214-233 8-27 (170)
488 1c1y_A RAS-related protein RAP 82.2 0.75 2.6E-05 40.4 3.1 19 215-233 6-24 (167)
489 2npi_A Protein CLP1; CLP1-PCF1 82.2 0.76 2.6E-05 48.6 3.5 43 205-247 131-175 (460)
490 2dpy_A FLII, flagellum-specifi 82.2 1.2 4.2E-05 46.7 5.1 53 203-256 146-201 (438)
491 1b0u_A Histidine permease; ABC 82.1 0.72 2.4E-05 44.9 3.1 35 211-246 31-66 (262)
492 3gfo_A Cobalt import ATP-bindi 82.0 0.79 2.7E-05 44.9 3.4 35 211-246 33-68 (275)
493 1u0l_A Probable GTPase ENGC; p 82.0 1.1 3.7E-05 44.5 4.5 29 204-233 162-190 (301)
494 1g6h_A High-affinity branched- 81.9 0.83 2.8E-05 44.3 3.4 35 211-246 32-67 (257)
495 1ji0_A ABC transporter; ATP bi 81.8 0.75 2.6E-05 44.1 3.1 35 211-246 31-66 (240)
496 2ck3_D ATP synthase subunit be 81.8 1.2 4.2E-05 46.8 4.8 59 203-261 142-205 (482)
497 2y8e_A RAB-protein 6, GH09086P 81.8 0.76 2.6E-05 41.0 3.0 20 214-233 16-35 (179)
498 2lkc_A Translation initiation 81.7 0.97 3.3E-05 40.3 3.6 22 212-233 8-29 (178)
499 3qxc_A Dethiobiotin synthetase 81.7 1.5 5E-05 42.1 5.0 36 213-248 22-58 (242)
500 2pze_A Cystic fibrosis transme 81.6 0.78 2.7E-05 43.6 3.1 23 211-233 33-55 (229)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=3.5e-110 Score=944.68 Aligned_cols=620 Identities=46% Similarity=0.734 Sum_probs=539.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecC---CCCCCCCCC
Q 006652 13 VSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTK---GDVLPAHKF 89 (637)
Q Consensus 13 ~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 89 (637)
.++++|+++|.+||.+|+++|+++..+.++++|.++++++|.||.+|.+.+..++++|+++++|.++. ...+|++.|
T Consensus 2 ~~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~ 81 (646)
T 4b3f_X 2 AAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSF 81 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999998765 356789999
Q ss_pred CCCCEEEEeeCCCCCCCCceEEEEEEEEeCCEEEEEecCCCCC----CCCCCeEEEEecchhhHHHHHHHHHHHHhcccC
Q 006652 90 GTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFDDIPEE----GLNSPLRLEKLANEVTYRRMKDALIQLSKGVQN 165 (637)
Q Consensus 90 ~~gd~v~~~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~~~~~----~~~~~~~l~~~~~~~t~~r~~~al~~~~~~~~~ 165 (637)
++||+|+|++..+. ......|+|+++..++|+|.++..++. .....|+++++.|++||+||+.||..+... ..
T Consensus 82 ~~Gd~v~~~~~~~~--~~~~~~g~v~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~-~~ 158 (646)
T 4b3f_X 82 TSGDIVGLYDAANE--GSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKY-HS 158 (646)
T ss_dssp CTTCEEEEEETTTT--SCCCEEEEEEEEETTEEEEECC-------CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTC-CS
T ss_pred CCCCEEEEEecCCC--CCceEEEEEEEEeCCEEEEEECCccccccccCCCCcEEEEEeccchHHHHHHHHHHHhhhc-cc
Confidence 99999999986432 345689999999999999999876544 234579999999999999999999999873 34
Q ss_pred CCCcCccccccCCCCCCcccccccCCCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 166 GPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 166 ~~~~~l~~~l~~~~~p~~~~~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
.+...++++|||..+|.+........+++..||++|++||..++.+++++||+||||||||+|++++|.++++++.+||+
T Consensus 159 ~~~~~l~~~l~~~~~p~~~~~~~~~~~~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv 238 (646)
T 4b3f_X 159 GPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLC 238 (646)
T ss_dssp STTHHHHHHHTTSSCCCCCCCCCCCCCSSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CchHHHHHHHcCCCCCCCccccCcccccCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 55667889999998887766555667788999999999999999878899999999999999999999999999999999
Q ss_pred eccchHHHHHHHHHhcCCCceEEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHH
Q 006652 246 CAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQ 325 (637)
Q Consensus 246 ~a~tn~Avd~l~~rL~~~~~~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 325 (637)
|||||.|||+|++||...+.+++|+|+++++.+.+..++++..+.+.+......++++++.....+..+..+...+..+.
T Consensus 239 ~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (646)
T 4b3f_X 239 CAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFR 318 (646)
T ss_dssp EESSHHHHHHHHHHHHHTTCCEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSH
T ss_pred EcCchHHHHHHHHHHHhcCCceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888888887765544333333333333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccccc----ccCCCCCCEEEEecCCCcchHHHHHHHHhCCeEEEeCC
Q 006652 326 KELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSR----KLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGD 401 (637)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~----~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~~~~vlvGD 401 (637)
..++.+.+.++..+.....+.+..+++|++|+.++... .+....||+||||||+|++++++|+|+.+++++|||||
T Consensus 319 ~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~~~~~ILVGD 398 (646)
T 4b3f_X 319 NEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGD 398 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGGGSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhccccceEEEcCC
Confidence 56677777777777778888999999999999988753 45677999999999999999999999999999999999
Q ss_pred CCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCc----------c
Q 006652 402 HLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVK----------R 471 (637)
Q Consensus 402 ~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~----------~ 471 (637)
|+||||++.+..+...|++.|+|+||.+.++.....+|++||||||+|++|+|+.||+|+|.+++.... .
T Consensus 399 ~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~ 478 (646)
T 4b3f_X 399 HKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAA 478 (646)
T ss_dssp TTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCC
T ss_pred ccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhcccccccc
Confidence 999999999999999999999999999988877677899999999999999999999999998765221 1
Q ss_pred CCCCCCcEEEEEccCCccccc-ccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhccCCCCCC
Q 006652 472 TSSTEPTLLLIDIAGCDMEEK-KDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKN 550 (637)
Q Consensus 472 ~~~~~~~~~~id~~~~~~~~~-~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~ 550 (637)
......|+.|+|+.|+...+. ...+.|+.|..||+.|..+++.|+..|+++++|||||||++|+.+|++.+.. ..++
T Consensus 479 ~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~--~~~~ 556 (646)
T 4b3f_X 479 TEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVH--RHPE 556 (646)
T ss_dssp CTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTT--TCTT
T ss_pred ccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHHHHH--hCCC
Confidence 223456899999998754332 3335788999999999999999999999999999999999999999976643 3468
Q ss_pred ceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccCCchHHHHHHHHHHHcCcccc
Q 006652 551 MEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLS 630 (637)
Q Consensus 551 i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~l~~~~~~~~~~~~ 630 (637)
|+|+|||+|||+|+|+||+|+||+|..+.+||+.|+||||||+||||++||||||..+|+++++|+.|++|++++|+|.+
T Consensus 557 i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~g~~~~ 636 (646)
T 4b3f_X 557 LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRT 636 (646)
T ss_dssp CEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHSSEEEE
T ss_pred CEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcCCHHHHHHHHHHHHCCCEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q 006652 631 GSEYLNE 637 (637)
Q Consensus 631 ~~~~~~~ 637 (637)
++||++|
T Consensus 637 ~~e~ldd 643 (646)
T 4b3f_X 637 AFEYLDD 643 (646)
T ss_dssp GGGTCSS
T ss_pred HHHhhhc
Confidence 9999987
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=3.9e-82 Score=710.95 Aligned_cols=585 Identities=28% Similarity=0.414 Sum_probs=439.1
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecCCCCCCCC
Q 006652 8 EKQSAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAH 87 (637)
Q Consensus 8 ~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (637)
.+.++.|+.+|.++|.+||.+|++++..... ..+..++.+ .+..++.++.++.|..+. ..+++
T Consensus 2 ~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ 64 (624)
T 2gk6_A 2 LGSRYEDAYQYQNIFGPLVKLEADYDKKLKE--------------SQTQDNITV-RWDLGLNKKRIAYFTLPK--TDSDM 64 (624)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHH--------------HTCEEEECE-EEEECTTSCEEEEEECC--------
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhccCceE-EeeecCCCceEEEEEecc--cccCC
Confidence 4678999999999999999999987754221 123445555 456788999999998765 34567
Q ss_pred CCCCCCEEEEeeCCCCCCCCceEEEEEEEEeC---CEEEEEecCCC--CCCCCCCeEEEEecchhhHHHHHHHHHHHHhc
Q 006652 88 KFGTHDVVVLKPNKADLGSPALGQGVVYRLKD---SSITVAFDDIP--EEGLNSPLRLEKLANEVTYRRMKDALIQLSKG 162 (637)
Q Consensus 88 ~~~~gd~v~~~~~~~~~~~~~~~~g~v~~~~~---~~i~v~~~~~~--~~~~~~~~~l~~~~~~~t~~r~~~al~~~~~~ 162 (637)
+|..||.|+|+..++. .......|+|+++.+ ..|+|.++... +......+.++++++++||+||..||..+...
T Consensus 65 ~~~~Gd~v~l~~~~~~-~~~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~ 143 (624)
T 2gk6_A 65 RLMQGDEICLRYKGDL-APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVD 143 (624)
T ss_dssp -CCTTCEEEEEECSSS-SCCCEEEEEEEECSCSSCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEEECCCC-CCCcEEEEEEEEecCCCCCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhc
Confidence 8999999999975332 233457899999965 68999995332 11233468999999999999999999998763
Q ss_pred ccCCCCcCccccccCCCCCCcccc---cccC-CCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 163 VQNGPAAGLIPVLFGEQKPTVLKK---DIAF-KPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 163 ~~~~~~~~l~~~l~~~~~p~~~~~---~~~~-~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
. ......+.+.+++...|..... ...+ .+....||++|++||..++. .++++|+||||||||+|+++++.+++.
T Consensus 144 ~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 144 E-TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp T-TSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred c-ccchHHHHHHhcCCCCccccccccCcccccccccCCCCHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 1 1112335566777654432111 0111 12346799999999999986 789999999999999999999999987
Q ss_pred -cCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCCCc--ChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhcc
Q 006652 239 -RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARL--LPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKT 315 (637)
Q Consensus 239 -~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (637)
.+.+||+|||||.|+|++.+++.+.+.+++|+|++.+. ...+....++..+...+....... +.+.
T Consensus 222 ~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~-----------l~~~ 290 (624)
T 2gk6_A 222 QGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK-----------LQQL 290 (624)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHH-----------HHTT
T ss_pred cCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccccchhhccchhhhhHHHHHHhccchHHHHH-----------HHHH
Confidence 78999999999999999999999999999999987642 222222334444433322211111 1111
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHh-CC
Q 006652 316 KDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLK-GS 394 (637)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~-~~ 394 (637)
+..... +.. ...+.++.........+++.++||++||.++.+..+....||+||||||+|++++++|+++.. ++
T Consensus 291 ~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~ 365 (624)
T 2gk6_A 291 KDETGE--LSS---ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK 365 (624)
T ss_dssp CC------CCH---HHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGGTTCCCSEEEETTGGGSCHHHHHHHHTTTBS
T ss_pred HHhhcc--cCH---HHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchhhhcCCCCEEEEecccccCcHHHHHHHHhcCC
Confidence 110000 000 000112222233456789999999999999887777778999999999999999999999875 58
Q ss_pred eEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCcc---
Q 006652 395 RCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR--- 471 (637)
Q Consensus 395 ~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~--- 471 (637)
++|+||||+||||++.+..+...|++.|+|+|+..... ..++|++||||||+|++|+|.+||+|+|.++......
T Consensus 366 ~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~--~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~ 443 (624)
T 2gk6_A 366 QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGI--RPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKK 443 (624)
T ss_dssp EEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTC--CCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCT
T ss_pred eEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCC--CcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhccc
Confidence 99999999999999999988889999999999986432 2578999999999999999999999999876542111
Q ss_pred ----C-CCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhccCC
Q 006652 472 ----T-SSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDD 546 (637)
Q Consensus 472 ----~-~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~ 546 (637)
. .....|+.|+++.|.+ +....+.|+.|..||+.|.+++..|+..|+++++|||||||++|+..|++.+....
T Consensus 444 ~~~~~~~~~~~p~~~~~~~g~~--~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~dIgVItpy~~Q~~~i~~~l~~~~ 521 (624)
T 2gk6_A 444 GFDFQWPQPDKPMFFYVTQGQE--EIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 521 (624)
T ss_dssp TCCCCCSSTTCCEEEEECCCCE--ECCTTSSCCEEHHHHHHHHHHHHHHHTTTCCGGGEEEECSCHHHHHHHHHHHHHSC
T ss_pred ccCCCCCCCCCCEEEEEcCCcc--eecCCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCHHHHHHHHHHHHhhc
Confidence 1 1235688999987753 22333578899999999999999999999999999999999999999997653322
Q ss_pred C-----CCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccCCchHHHHHHHH
Q 006652 547 K-----LKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEY 621 (637)
Q Consensus 547 ~-----~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~l~~~ 621 (637)
. ...+.|+|||+|||+|+|+||+|+||++..+.+||+.|+||||||+||||++|+||||..+|+.+++|+.|++|
T Consensus 522 ~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~~~~~~~li~~ 601 (624)
T 2gk6_A 522 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY 601 (624)
T ss_dssp SSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTTSHHHHHHHHH
T ss_pred cccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECHHHHccChHHHHHHHH
Confidence 2 14689999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHcCcccccc
Q 006652 622 FEEHAEYLSGS 632 (637)
Q Consensus 622 ~~~~~~~~~~~ 632 (637)
++++|+++.+.
T Consensus 602 ~~~~~~~~~~~ 612 (624)
T 2gk6_A 602 YKEQKVLVEGP 612 (624)
T ss_dssp HHHTTCCCCSC
T ss_pred HHHCCCEEeCC
Confidence 99999997653
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=8.9e-80 Score=702.09 Aligned_cols=588 Identities=27% Similarity=0.403 Sum_probs=449.3
Q ss_pred ccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecCCCCC
Q 006652 5 KTKEKQSAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVL 84 (637)
Q Consensus 5 ~~~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (637)
..+.+.++.++.+|.+.|.||+.+|++++..... ..++.++.+ .+..++.++.+..|..+. ..
T Consensus 175 ~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 237 (800)
T 2wjy_A 175 PQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE--------------SQTQDNITV-RWDLGLNKKRIAYFTLPK--TD 237 (800)
T ss_dssp CCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHH--------------HTCEEEECC-EEEECTTCCEEEEECCCB--CC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhhhhh--------------hhhccceEE-EEEecCCCeeEEEEEecc--cc
Confidence 3567889999999999999999999887754111 123445555 456788999999998766 23
Q ss_pred CCCCCCCCCEEEEeeCCCCCCCCceEEEEEEEEeC---CEEEEEecCCC--CCCCCCCeEEEEecchhhHHHHHHHHHHH
Q 006652 85 PAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKD---SSITVAFDDIP--EEGLNSPLRLEKLANEVTYRRMKDALIQL 159 (637)
Q Consensus 85 ~~~~~~~gd~v~~~~~~~~~~~~~~~~g~v~~~~~---~~i~v~~~~~~--~~~~~~~~~l~~~~~~~t~~r~~~al~~~ 159 (637)
+..+|..||.|.++...+. .......|+|+++.. ..|.|.++... +......+.++++++++||+||..||..+
T Consensus 238 ~~~~l~~GD~v~l~~~~~~-~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~ 316 (800)
T 2wjy_A 238 SDMRLMQGDEICLRYKGDL-APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTF 316 (800)
T ss_dssp C--CCCTTCEEEEEECSSS-SCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCC-CCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChHHHHHHHHHHH
Confidence 5568999999999975332 233457899999976 67888885322 11233458999999999999999999998
Q ss_pred HhcccCCCCcCccccccCCCCCCccccc---ccC-CCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 160 SKGVQNGPAAGLIPVLFGEQKPTVLKKD---IAF-KPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 160 ~~~~~~~~~~~l~~~l~~~~~p~~~~~~---~~~-~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.... ......+.+.+++...|...... ..+ ......||++|++||..++. .++++|+||||||||+|+++++.+
T Consensus 317 ~~~e-~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 317 AVDE-TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp HHCT-TSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT-SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhh-cchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 7632 11122345556665433221110 011 12346799999999999987 789999999999999999999999
Q ss_pred HHH-cCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCCC--cChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHH
Q 006652 236 EVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPAR--LLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKL 312 (637)
Q Consensus 236 l~~-~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (637)
++. .+.+||+|||||.|+|++.+++.+.+.+++|+|++.+ +...+...+++..+...+.....+.+. .+....
T Consensus 395 l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~----~~~~~~ 470 (800)
T 2wjy_A 395 LARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQ----QLKDET 470 (800)
T ss_dssp HHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHH----HHHTTT
T ss_pred HHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHH----HHHHhh
Confidence 987 6899999999999999999999999999999998764 222223334454444333222111111 111000
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHh
Q 006652 313 LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLK 392 (637)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~ 392 (637)
... .... .+.++.........+++.++||++|+.++....+....||+||||||+|++++++|+++..
T Consensus 471 ~~~-~~~~-----------~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~ 538 (800)
T 2wjy_A 471 GEL-SSAD-----------EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL 538 (800)
T ss_dssp SCC-CHHH-----------HHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTTCCCSEEEETTGGGSCHHHHHHHHTT
T ss_pred ccc-ChHH-----------HHHHHHHHHHHHHhhhccCCEEEEchhhhCChhhhcCCCCEEEEECCCCCCcHHHHHHHHh
Confidence 000 0000 0112222233456789999999999999887777778999999999999999999999876
Q ss_pred -CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCcc
Q 006652 393 -GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKR 471 (637)
Q Consensus 393 -~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~ 471 (637)
++++++||||+||||++.+..+...|++.|+|+|+..... ..++|++||||||+|++|+|.+||+|+|.++......
T Consensus 539 ~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~--~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r 616 (800)
T 2wjy_A 539 GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGI--RPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR 616 (800)
T ss_dssp TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTC--CCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGG
T ss_pred cCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCC--CceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhh
Confidence 5899999999999999999988889999999999986422 3578999999999999999999999999876542111
Q ss_pred --------CCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHhc
Q 006652 472 --------TSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRS 543 (637)
Q Consensus 472 --------~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~ 543 (637)
......|+.|+++.|.+. ....+.|+.|..||+.|.+++..|+..|+++++|||||||++|+..|++.+.
T Consensus 617 ~~~~~~~~~~~~~~p~~f~~~~g~e~--~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~ 694 (800)
T 2wjy_A 617 VKKGFDFQWPQPDKPMFFYVTQGQEE--IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQ 694 (800)
T ss_dssp SCTTCCCCCSSTTSCEEEEECCCCCE--ECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCEEEEEcCCcee--ecCCCCcccCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHHHH
Confidence 122457899999887532 2234578899999999999999999999999999999999999999996553
Q ss_pred cCCC-----CCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccCCchHHHHH
Q 006652 544 KDDK-----LKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRL 618 (637)
Q Consensus 544 ~~~~-----~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~l 618 (637)
.... ...+.|+|||+|||+|+|+||+|+||++..+.+||+.|+||||||+||||++|+||||..+|+.+++|+.|
T Consensus 695 ~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~~~w~~l 774 (800)
T 2wjy_A 695 FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL 774 (800)
T ss_dssp HHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSSHHHHHH
T ss_pred hcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHhccCHHHHHH
Confidence 2111 24799999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcccccc
Q 006652 619 IEYFEEHAEYLSGS 632 (637)
Q Consensus 619 ~~~~~~~~~~~~~~ 632 (637)
++|++++|+|+.+.
T Consensus 775 l~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 775 LNYYKEQKVLVEGP 788 (800)
T ss_dssp HHHHHHTTCEEESC
T ss_pred HHHHHHCCCEEeCC
Confidence 99999999997653
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-80 Score=704.74 Aligned_cols=586 Identities=28% Similarity=0.404 Sum_probs=443.3
Q ss_pred ccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhHHhhcCCeeecceEEeeeeccCCcEEEEEEecCCCCC
Q 006652 5 KTKEKQSAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVL 84 (637)
Q Consensus 5 ~~~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (637)
..+.+.+|.|..+|.+.|.|||.+|.+++... ....++.++.+ .+..++.++++++|..+... .
T Consensus 177 ~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~ 240 (802)
T 2xzl_A 177 IPPLLLRYQDAYEYQRSYGPLIKLEADYDKQL--------------KESQALEHISV-SWSLALNNRHLASFTLSTFE-S 240 (802)
T ss_dssp -CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHH--------------HCCC--CCBCE-EEEECTTSCEEEEEC-------
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhhh--------------hhHhhccCceE-eeeccCCCeEEEEEEecccc-c
Confidence 36778899999999999999999998876532 11223445555 44668889999999886532 3
Q ss_pred CCCCCCCCCEEEEeeCCCCCCCCceEEEEEEEEeC---CEEEEEecCCC---CCCCCCCeEEEEecchhhHHHHHHHHHH
Q 006652 85 PAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKD---SSITVAFDDIP---EEGLNSPLRLEKLANEVTYRRMKDALIQ 158 (637)
Q Consensus 85 ~~~~~~~gd~v~~~~~~~~~~~~~~~~g~v~~~~~---~~i~v~~~~~~---~~~~~~~~~l~~~~~~~t~~r~~~al~~ 158 (637)
++++|..||.|+++..++. .......|+|+++.+ ..|+|.++... +......+.++++++.+||+||..||..
T Consensus 241 ~~~~~~~GD~v~l~~~~~~-~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~ 319 (802)
T 2xzl_A 241 NELKVAIGDEMILWYSGMQ-HPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKK 319 (802)
T ss_dssp ---CCCTTCEEEEEECSSS-SSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCC-CCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHHHHH
Confidence 5568999999999965332 223457899999974 56889885321 2123345899999999999999999999
Q ss_pred HHhcccCCCCcCccccccCCCCCCcccc---cccC-CCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHH
Q 006652 159 LSKGVQNGPAAGLIPVLFGEQKPTVLKK---DIAF-KPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~---~~~~-~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
+.... ......+.+.+++...|..... ...+ .+....||++|++||..++. .++++|+||||||||+|+++++.
T Consensus 320 ~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 320 FAIDK-KSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp HHHCT-TSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcc-ccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHH
Confidence 87531 1112345667777654432111 0011 12346799999999999986 78999999999999999999999
Q ss_pred HHHH-cCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCCC--cChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHH
Q 006652 235 QEVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPAR--LLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGK 311 (637)
Q Consensus 235 ~l~~-~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (637)
++++ .+.+||+|||||.|+|++.+||.+.+.+++|+|++.+ +...+...+++..+...+.. ....+. .....
T Consensus 398 ~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~-~l~~l~----~~~~~ 472 (802)
T 2xzl_A 398 HLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKG-ELKNLL----KLKDE 472 (802)
T ss_dssp HHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCT-HHHHHH----HHHHH
T ss_pred HHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchhhhcchhhhhhHHHHHHhhcHH-HHHHHH----HHHHh
Confidence 9987 6899999999999999999999999999999998754 22333344455544433322 111111 11111
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHH
Q 006652 312 LLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL 391 (637)
Q Consensus 312 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~ 391 (637)
.... ..... +.+..........+++.++||++|+.++....+.. .||+||||||+|++++++++++.
T Consensus 473 ~~~l-s~~~~-----------~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~ 539 (802)
T 2xzl_A 473 VGEL-SASDT-----------KRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT-KFRTVLIDESTQASEPECLIPIV 539 (802)
T ss_dssp HSCC-CHHHH-----------HHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCCS-CCSEEEETTGGGSCHHHHHHHHT
T ss_pred hccC-CHHHH-----------HHHHHHHHHHHHHHhccCCEEEechhhcChHHHhc-cCCEEEEECccccchHHHHHHHH
Confidence 1100 00000 11111122344678999999999999988766666 99999999999999999999987
Q ss_pred h-CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCc
Q 006652 392 K-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVK 470 (637)
Q Consensus 392 ~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~ 470 (637)
. ++++++||||+||||++.+..+...|++.|+|+|+.... ...++|++||||||+|++|+|.+||+|+|.++.....
T Consensus 540 ~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~--~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~ 617 (802)
T 2xzl_A 540 KGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLG--HVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQ 617 (802)
T ss_dssp TTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTT--CCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTT
T ss_pred hCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcC--CCceEeeeecCCChHHHHHHHHHhcCCccccCCchhh
Confidence 5 589999999999999999998888999999999998642 2357899999999999999999999999987654211
Q ss_pred c--------CCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHh
Q 006652 471 R--------TSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILR 542 (637)
Q Consensus 471 ~--------~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~ 542 (637)
. ......|+.|+++.|.+ +....+.|+.|..||+.|.+++..|+..|+++++|||||||++|+..|++.+
T Consensus 618 r~~~~~~~~~~~~~~p~~f~~~~g~~--~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L 695 (802)
T 2xzl_A 618 RTVPNSKFPWPIRGIPMMFWANYGRE--EISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYM 695 (802)
T ss_dssp TCCTTCCCCCSSTTCCEEEEECCCCC--EECTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHH
T ss_pred hccccccCCCCCCCCCEEEEEcCCce--eecCCCCCcCCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHHHH
Confidence 1 11235688999987753 2223357889999999999999999999999999999999999999999755
Q ss_pred ccCC-----CCCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCccCCchHHHH
Q 006652 543 SKDD-----KLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKR 617 (637)
Q Consensus 543 ~~~~-----~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~l~~~~~~~~ 617 (637)
.... ....+.|+|||+|||+|+|+||+|+||++..+.+||+.++||||||+||||++|+||||..+|+.+++|+.
T Consensus 696 ~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~~~w~~ 775 (802)
T 2xzl_A 696 QMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNH 775 (802)
T ss_dssp HHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTSHHHHH
T ss_pred HHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhccChHHHH
Confidence 3211 12479999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccc
Q 006652 618 LIEYFEEHAEYLSG 631 (637)
Q Consensus 618 l~~~~~~~~~~~~~ 631 (637)
|++|++++|+|+.+
T Consensus 776 ll~~~~~~~~~~~~ 789 (802)
T 2xzl_A 776 LLIHFREKGCLVEG 789 (802)
T ss_dssp HHHHHHHHTCEEEE
T ss_pred HHHHHHHcCCeecC
Confidence 99999999999876
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=100.00 E-value=8e-34 Score=322.43 Aligned_cols=315 Identities=14% Similarity=0.152 Sum_probs=185.5
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC----CeEEEeccchHHHHHHHHHhcCC-C--ce
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG----SKILACAASNIAVDNIVERLVPH-R--VR 266 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~----~~ILv~a~tn~Avd~l~~rL~~~-~--~~ 266 (637)
...||++|++||.. ..+.++|.||||||||+|++++|.+++..+ .+||++||||+|++++.+||.+. + ..
T Consensus 7 ~~~Ln~~Q~~av~~---~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~ 83 (647)
T 3lfu_A 7 LDSLNDKQREAVAA---PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQG 83 (647)
T ss_dssp HTTCCHHHHHHHTC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCT
T ss_pred hhcCCHHHHHHHhC---CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccC
Confidence 35799999999973 468899999999999999999999999863 79999999999999999999754 1 11
Q ss_pred EEEeCCCCCcChhHHHhh---------------------HHHHHhcCC---ChhhHHHHHHHHHHHHHHHhccCChHH-H
Q 006652 267 LVRLGHPARLLPQVLESA---------------------LDAQVLRGD---NSSLASDIRKEMKALNGKLLKTKDKNT-R 321 (637)
Q Consensus 267 ~vrig~~~~~~~~~~~~~---------------------l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 321 (637)
-+.+++.+++...++... +...+.... .......+...+............... .
T Consensus 84 ~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~ 163 (647)
T 3lfu_A 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYG 163 (647)
T ss_dssp TCEEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----
T ss_pred CcEEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhcc
Confidence 223333322221111110 000000000 000011112222222211111100000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-cccc---CCCCCCEEEEecCCCcchHH--HHHHHH-hCC
Q 006652 322 REIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIA--CWIALL-KGS 394 (637)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEA~q~~e~~--~l~~l~-~~~ 394 (637)
......+..+.+.+.+.... ...++..+++..++.... ...+ -..+|++|+|||+||+++.+ ++..|. .+.
T Consensus 164 ~~~~~~~~~i~~~y~~~~~~--~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~ 241 (647)
T 3lfu_A 164 NPVEQTWQKVYQAYQEACDR--AGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTG 241 (647)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--HTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCHHHHHHHHHHhcCCC
Confidence 00011122222222221110 111111121111111110 0000 02368999999999997764 444455 347
Q ss_pred eEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCccCCC
Q 006652 395 RCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS 474 (637)
Q Consensus 395 ~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~ 474 (637)
++++|||++|..+.+ .|.+...|.++...++....+.|+.||||++.|++++|.+|+++....... ......
T Consensus 242 ~l~~vGD~~QsIy~f-------rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~-~~~~~~ 313 (647)
T 3lfu_A 242 KVMIVGDDDQSIYGW-------RGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKK-LWTDGA 313 (647)
T ss_dssp EEEEEECGGGCCCGG-------GTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC-CBCSSC
T ss_pred EEEEEcCchhhhccc-------cCCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCc-cccCCC
Confidence 899999999966543 566778888998888876678999999999999999999998764332221 111112
Q ss_pred CCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHH
Q 006652 475 TEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQV 535 (637)
Q Consensus 475 ~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~ 535 (637)
.+.++.++...+ ...|++.|+..+.+++..|++++||+||+|++.|.
T Consensus 314 ~~~~~~~~~~~~--------------~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~ 360 (647)
T 3lfu_A 314 DGEPISLYCAFN--------------ELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS 360 (647)
T ss_dssp CCCCEEEEEEEE--------------HHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGH
T ss_pred CCCceEEEecCC--------------hHHHHHHHHHHHHHHHHcCCCccCEEEEEeCchhH
Confidence 223444443221 24799999999999999999999999999987664
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.98 E-value=1.2e-32 Score=304.10 Aligned_cols=288 Identities=23% Similarity=0.262 Sum_probs=192.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEE
Q 006652 190 FKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 190 ~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vr 269 (637)
+.++...||++|+.|+..++. .++++|+|||||||||++..++..+...+.+|+++|||+.|++++.+++.
T Consensus 183 l~~~~~~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~-------- 253 (574)
T 3e1s_A 183 PKKARKGLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTG-------- 253 (574)
T ss_dssp CTTTTTTCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT--------
T ss_pred HHhhcCCCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhc--------
Confidence 344467899999999999887 78999999999999999999999999999999999999999999998752
Q ss_pred eCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006652 270 LGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKN 349 (637)
Q Consensus 270 ig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~ 349 (637)
......+. ++..
T Consensus 254 --~~a~Tih~------------------------------------------------------------------ll~~ 265 (574)
T 3e1s_A 254 --RTASTVHR------------------------------------------------------------------LLGY 265 (574)
T ss_dssp --SCEEEHHH------------------------------------------------------------------HTTE
T ss_pred --ccHHHHHH------------------------------------------------------------------HHcC
Confidence 11111110 0100
Q ss_pred CceeeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHH----hCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHH
Q 006652 350 ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL----KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFE 425 (637)
Q Consensus 350 ~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~----~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~ 425 (637)
.. .......-....+|+||||||+++....+ ..|+ .+.++|+|||++||||+..+ +.|.
T Consensus 266 ~~------~~~~~~~~~~~~~dvlIIDEasml~~~~~-~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~ 328 (574)
T 3e1s_A 266 GP------QGFRHNHLEPAPYDLLIVDEVSMMGDALM-LSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLL 328 (574)
T ss_dssp ET------TEESCSSSSCCSCSEEEECCGGGCCHHHH-HHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHH
T ss_pred Cc------chhhhhhcccccCCEEEEcCccCCCHHHH-HHHHHhCcCCCEEEEEecccccCCccCC----------cHHH
Confidence 00 00011111234789999999998865533 2333 35799999999999998543 3566
Q ss_pred HHHHHcCCccccccccccCCc--hhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHH
Q 006652 426 RLADLYGDEVTSMLTVQYRMH--EHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEG 503 (637)
Q Consensus 426 rl~~~~~~~~~~~L~~qYR~~--~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~ 503 (637)
.+.... ..+.|+.+||++ +.|..+++.+ ..|.+.... ..+.|+...... .
T Consensus 329 ~l~~~~---~~~~L~~~~R~~~~s~I~~~a~~i-~~g~~~~~~----------~d~~~~~~~~~~--------------~ 380 (574)
T 3e1s_A 329 ALAQAA---PTIKLTQVYRQAAKNPIIQAAHGL-LHGEAPAWG----------DKRLNLTEIEPD--------------G 380 (574)
T ss_dssp HHHHHS---CEEECCCCCHHHHTCHHHHHHHHH-HTTCCCCCC----------BTTEEEEECCST--------------T
T ss_pred HHHhcC---CEEEcceeEeCCCccHHHHHHHHH-hCCCCcccC----------CCeEEEeCCCHH--------------H
Confidence 666632 367899999998 6799988754 444332110 234454432210 1
Q ss_pred HHHHHHHHHHHHHHcCCCC-CeEEEEcccHHH---HHH----HHHHhccCC-----------------------------
Q 006652 504 EAEVAMAHAKRLIQSGVHA-SDIGIITPYAAQ---VVL----LKILRSKDD----------------------------- 546 (637)
Q Consensus 504 Ea~~v~~~v~~l~~~g~~~-~~I~IItpy~~Q---~~~----l~~l~~~~~----------------------------- 546 (637)
.+..+.+.+. ++.+ .++.|+||.+.. +.. +++.++...
T Consensus 381 ~~~~i~~~~~-----~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~N 455 (574)
T 3e1s_A 381 GARRVALMVR-----ELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFN 455 (574)
T ss_dssp CHHHHHHHHH-----HTTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCT
T ss_pred HHHHHHHHHh-----ccCcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceec
Confidence 1233333333 4444 788888887643 222 232221100
Q ss_pred ----------------------------CCCC---ceeccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhc
Q 006652 547 ----------------------------KLKN---MEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTR 595 (637)
Q Consensus 547 ----------------------------~~~~---i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTR 595 (637)
.++. ..+.|||+|||+|+|.||+.+..+.. .+.+++++|||+||
T Consensus 456 GdiG~i~~~~~~~l~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~~-----~~l~r~LlYvAiTR 530 (574)
T 3e1s_A 456 GTLGMVLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHM-----PMLSRNLVYTALTR 530 (574)
T ss_dssp TCEEEEEEECSSCEEEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGGG-----GGCCHHHHHHHHHT
T ss_pred CceeEEEcCCCCEEEEEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCccc-----cccccceEEEEeee
Confidence 0001 11369999999999999998865432 46788999999999
Q ss_pred cccceEEEecCCcc
Q 006652 596 ARRQCCLVCDTETV 609 (637)
Q Consensus 596 Ak~~liivg~~~~l 609 (637)
||+.|+|+|+...+
T Consensus 531 Ak~~l~lvg~~~~l 544 (574)
T 3e1s_A 531 ARDRFFSAGSASAW 544 (574)
T ss_dssp EEEEEEEEECHHHH
T ss_pred eeeEEEEEECHHHH
Confidence 99999999987654
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.98 E-value=6.8e-33 Score=316.55 Aligned_cols=312 Identities=16% Similarity=0.166 Sum_probs=184.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-Cc--eE
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-RV--RL 267 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~~--~~ 267 (637)
..||++|++||.. ..+..+|.|+||||||+|++++|.+++.. +.+||++||||+|+.+|.+|+.+. +. .-
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~ 86 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAED 86 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTT
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccC
Confidence 5799999999985 36789999999999999999999999974 379999999999999999998754 11 11
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcC---CCh---------hh----------------HHHHHHHHHHHHHHHhccCChH
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRG---DNS---------SL----------------ASDIRKEMKALNGKLLKTKDKN 319 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~---~~~---------~~----------------~~~~~~~~~~~~~~l~~~~~~~ 319 (637)
+.+++.+++...++ ....... .+. .+ ...+...+..............
T Consensus 87 ~~v~Tfhs~~~~il----r~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~ 162 (724)
T 1pjr_A 87 VWISTFHSMCVRIL----RRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFA 162 (724)
T ss_dssp SEEEEHHHHHHHHH----HHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHT
T ss_pred cEEeeHHHHHHHHH----HHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 23333332222221 1111000 000 00 1111111111111100000000
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-ccccC---CCCCCEEEEecCCCcchHH--HHHHHH
Q 006652 320 --TRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKLD---NTSFDLVIIDEAAQALEIA--CWIALL 391 (637)
Q Consensus 320 --~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l~---~~~fd~vIIDEA~q~~e~~--~l~~l~ 391 (637)
........+..+...|.+... ....++..+++..+..... ++.+. ..+|++|+|||+||++..+ ++..|.
T Consensus 163 ~~~~~~~~~~~~~iy~~Y~~~l~--~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~ 240 (724)
T 1pjr_A 163 KRASTYYEKVVSDVYQEYQQRLL--RNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLA 240 (724)
T ss_dssp TC---CHHHHHHHHHHHHHHHHH--HTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhHhcCCHHHHHHHHHHH
Confidence 000001112222222222111 1112333333332222111 11111 2479999999999998774 444454
Q ss_pred h-CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCc
Q 006652 392 K-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVK 470 (637)
Q Consensus 392 ~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~ 470 (637)
. +.++++|||++|..+.+ .|.+...|.++.+.+|....+.|..|||+++.|++++|.++.++.-..... ..
T Consensus 241 ~~~~~l~vVGD~~QsIY~f-------RGA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k~-l~ 312 (724)
T 1pjr_A 241 ERFQNICAVGDADQSIYRW-------RGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKR-IW 312 (724)
T ss_dssp TTTCCEEEEECGGGCCCGG-------GTCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC-CB
T ss_pred cCCCeEEEEECchhhcccc-------cCCCHHHHHHHHHHCCCCcEEECCCCCCCCHHHHHHHHHHHHhCccccCcc-cc
Confidence 4 36899999999977654 455667788888888776678999999999999999999997654322211 11
Q ss_pred cCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHH-cCCCCCeEEEEcccHHHHHH
Q 006652 471 RTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQ-SGVHASDIGIITPYAAQVVL 537 (637)
Q Consensus 471 ~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~-~g~~~~~I~IItpy~~Q~~~ 537 (637)
.....+.++.++.... ...|+..|+..+.+++. .|++++||+||++.++|...
T Consensus 313 ~~~~~g~~i~~~~~~~--------------~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~ 366 (724)
T 1pjr_A 313 TENPEGKPILYYEAMN--------------EADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRV 366 (724)
T ss_dssp CSSCCCCCEEEEEEEE--------------HHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHH
T ss_pred cccCCCCceEEEecCC--------------HHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHH
Confidence 1112233444443221 24789999999999987 78999999999988776543
No 8
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.5e-31 Score=304.31 Aligned_cols=310 Identities=15% Similarity=0.106 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEeccchHHHHHHHHHhcCC-C---ceE
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-R---VRL 267 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rL~~~-~---~~~ 267 (637)
.||++|++||.. ..+..+|.|+||||||+|++++|.+++.. +.+||++||||+|+.+|.+|+.+. + ..-
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~ 78 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTT
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccC
Confidence 599999999985 36899999999999999999999999864 479999999999999999998753 1 111
Q ss_pred EEeCCCCCcChhHHHhhHHHHHhcCCC------------------------hhhHHHHHHHHHHHHHHHhccCChHH--H
Q 006652 268 VRLGHPARLLPQVLESALDAQVLRGDN------------------------SSLASDIRKEMKALNGKLLKTKDKNT--R 321 (637)
Q Consensus 268 vrig~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 321 (637)
+.+++.+++...++...... .....+ ......+...+............... .
T Consensus 79 ~~v~Tfhs~~~~il~~~~~~-~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~ 157 (673)
T 1uaa_A 79 LMISTFHTLGLDIIKREYAA-LGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAI 157 (673)
T ss_dssp SEEEEHHHHHHHHHHHHHHH-TTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTTCCTTHHHHTCC
T ss_pred CEEEeHHHHHHHHHHHHHHH-hCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcCCCHHHHHHHhh
Confidence 23333333322222211100 000000 00111111111111111000000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeccccc-cccc---CCCCCCEEEEecCCCcchHH--HHHHHHh-CC
Q 006652 322 REIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIA--CWIALLK-GS 394 (637)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEA~q~~e~~--~l~~l~~-~~ 394 (637)
......+..+...|.+.... ...++..+++..+..... +..+ -..+|++|+|||+||++..+ ++..|.. +.
T Consensus 158 ~~~~~~~~~i~~~Y~~~l~~--~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~ 235 (673)
T 1uaa_A 158 GERDRIFAHCYGLYDAHLKA--CNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRA 235 (673)
T ss_dssp SHHHHHHHHHHHHHHHHHHH--HTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHHHHHHHHHHhcCCC
Confidence 00111222222222221110 111121222111111110 0111 12489999999999997765 4445554 47
Q ss_pred eEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhHHhhchhhccCCccccCCCCCccCCC
Q 006652 395 RCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSS 474 (637)
Q Consensus 395 ~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~ 474 (637)
++++|||++|..+.+ .|.....|.++...+|....+.|+.|||++++|++++|.+|.++....... ......
T Consensus 236 ~l~~vGD~~QsIy~f-------rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~~~-l~~~~~ 307 (673)
T 1uaa_A 236 RFTVVGDDDQSIYSW-------RGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKR-LFSELG 307 (673)
T ss_dssp CEEEECCGGGCCCGG-------GTBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSCCC-CCBSSC
T ss_pred eEEEEeCchhhhhhc-------cCCCHHHHHHHHHhCCCCeEEECCCCCCCChHHHHHHHHHHHhchhccccc-ccccCC
Confidence 899999999976654 455677888888888766678999999999999999999987653221111 111111
Q ss_pred CCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHH-HcCCCCCeEEEEcccHH
Q 006652 475 TEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLI-QSGVHASDIGIITPYAA 533 (637)
Q Consensus 475 ~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~-~~g~~~~~I~IItpy~~ 533 (637)
.+.++.++... ....|++.|+..+.+++ ..|++++||+||++.+.
T Consensus 308 ~g~~i~~~~~~--------------~~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~ 353 (673)
T 1uaa_A 308 YGAELKVLSAN--------------NEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNH 353 (673)
T ss_dssp CCCCBEEEECS--------------SHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSG
T ss_pred CCCCceEEecC--------------CHHHHHHHHHHHHHHHHhccCCCccCEEEEEechh
Confidence 12233333221 12478999999999988 67899999999986543
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.96 E-value=5.8e-30 Score=277.58 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=121.6
Q ss_pred CCCCHHHHHHHHHHHcc----CCeEEEEcCCCCchHHHHHHHHHHHHHcCC-eEEEeccchHHHHHHHHHhcCCCceEEE
Q 006652 195 SNLDHSQKDAISKALSS----KNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~----~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rL~~~~~~~vr 269 (637)
..||+.|++|+..++.. .++.+|.||||||||+++..++..+...+. +|+++||||.|++++.+++..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~------- 96 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGK------- 96 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSS-------
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhcc-------
Confidence 57999999999987653 469999999999999999999999998886 899999999999999998621
Q ss_pred eCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006652 270 LGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKN 349 (637)
Q Consensus 270 ig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~ 349 (637)
.....+.. +..... ....
T Consensus 97 ---~~~T~h~~--------~~~~~~---------------------------------------------------~~~~ 114 (459)
T 3upu_A 97 ---EASTIHSI--------LKINPV---------------------------------------------------TYEE 114 (459)
T ss_dssp ---CEEEHHHH--------HTEEEE---------------------------------------------------ECSS
T ss_pred ---chhhHHHH--------hccCcc---------------------------------------------------cccc
Confidence 11111100 000000 0000
Q ss_pred CceeeeecccccccccCCCCCCEEEEecCCCcchHHH--HHHHH-hCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHH
Q 006652 350 ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIAC--WIALL-KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFER 426 (637)
Q Consensus 350 ~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~--l~~l~-~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~r 426 (637)
. ..+.. ........+++||||||+++..... +..++ .+.++++|||+.|+||+..+... ..+..
T Consensus 115 ~-~~~~~-----~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~-------~~l~~ 181 (459)
T 3upu_A 115 N-VLFEQ-----KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENT-------AYISP 181 (459)
T ss_dssp C-EEEEE-----CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCS-------CCCCG
T ss_pred c-chhcc-----cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcch-------HhHHH
Confidence 0 00000 0111234789999999998754422 22222 35799999999999998754310 11111
Q ss_pred HHHHcCCccccccccccCCchhHHhhchhhccCC
Q 006652 427 LADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460 (637)
Q Consensus 427 l~~~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~ 460 (637)
+... +....+.|+.+||+++.|.++++.+..+.
T Consensus 182 ~~~~-~~~~~~~L~~~~R~~~~I~~~a~~lr~g~ 214 (459)
T 3upu_A 182 FFTH-KDFYQCELTEVKRSNAPIIDVATDVRNGK 214 (459)
T ss_dssp GGTC-TTEEEEECCCCCCCCCHHHHHHHHHHTTC
T ss_pred HHhc-CCCcEEeceeeeeCCcHHHHHHHHHHcCC
Confidence 1111 23447789999999999999999876443
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.95 E-value=2e-28 Score=273.34 Aligned_cols=331 Identities=21% Similarity=0.214 Sum_probs=174.8
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH----cCCeEEEeccchHHHHHHHHHhcCCCceEEEeCC-
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK----RGSKILACAASNIAVDNIVERLVPHRVRLVRLGH- 272 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~----~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~- 272 (637)
++.|+.|+..++. .++++|+||||||||||+..++..+.. .+.+|+++|||+.|++.+.+.+....... .+..
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDE 228 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSC
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHH
Confidence 7899999999997 789999999999999999999998874 46799999999999999998865321000 0000
Q ss_pred -------CCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006652 273 -------PARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTD 345 (637)
Q Consensus 273 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (637)
.....+.++..... . .
T Consensus 229 ~~~~~~~~~~Tih~ll~~~~~---------------------------------~------------------------~ 251 (608)
T 1w36_D 229 QKKRIPEDASTLHRLLGAQPG---------------------------------S------------------------Q 251 (608)
T ss_dssp CCCSCSCCCBTTTSCC----------------------------------------------------------------
T ss_pred HHhccchhhhhhHhhhccCCC---------------------------------c------------------------h
Confidence 00000000000000 0 0
Q ss_pred HhhcCceeeeecccccccccCCCCCCEEEEecCCCcchHHH--HHHH-HhCCeEEEeCCCCCCCccccCHH------HHh
Q 006652 346 VIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIAC--WIAL-LKGSRCILAGDHLQLPPTVQSVE------AEK 416 (637)
Q Consensus 346 il~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~--l~~l-~~~~~~vlvGD~~QL~p~v~s~~------~~~ 416 (637)
..........++|++|||||+++..+.. ++.. ..+.++||+||+.||||+..+.. ...
T Consensus 252 -------------~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~ 318 (608)
T 1w36_D 252 -------------RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 (608)
T ss_dssp -----------------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGT
T ss_pred -------------HHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHh
Confidence 0000011123789999999998765432 2222 23489999999999999876531 123
Q ss_pred cCcCCcHHHHHHHHcCCc--------------cccccccccCCchh--HHhhchhhccCCccccC-------CCCC---c
Q 006652 417 KGLGRTLFERLADLYGDE--------------VTSMLTVQYRMHEH--IMNWSSKQLYNSKIKAH-------PSGV---K 470 (637)
Q Consensus 417 ~g~~~slf~rl~~~~~~~--------------~~~~L~~qYR~~~~--I~~~~n~~fY~~~l~~~-------~~~~---~ 470 (637)
.|++.++++++...++.. ..+.|+.+||++++ |..+++.+ ..|..... .... .
T Consensus 319 ~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~ 397 (608)
T 1w36_D 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRL 397 (608)
T ss_dssp TCCCHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCB
T ss_pred ccccHHHHHHHHHhcCcccccccccccccccccEEecceeeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceEEEe
Confidence 578888899888654321 14789999999977 98887644 44432210 0000 0
Q ss_pred cCCC--------------------------CC------CcEEEEE-ccCCccc---------ccccCCCCc-----cCHH
Q 006652 471 RTSS--------------------------TE------PTLLLID-IAGCDME---------EKKDEEDST-----MNEG 503 (637)
Q Consensus 471 ~~~~--------------------------~~------~~~~~id-~~~~~~~---------~~~~~~~s~-----~N~~ 503 (637)
.... +. ..+..+. ....... +.....+.. ....
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~~~~g~~gv~~lN~~i~~~l~~~~~~~~~~~~~~~ 477 (608)
T 1w36_D 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 (608)
T ss_dssp CCSTTTHHHHHHHHHHHTHHHHHHHHTCCCSSTTHHHHTTEEEEESCSSSSSSHHHHHHHHHGGGTSCC-----------
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHhhhhhhCCccCCchhHHHHHHHHHHHhCccCccccccccccc
Confidence 0000 00 0011110 0000000 000000000 0000
Q ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHH-HHH-------HHh-ccCCCCCCceeccCCCCCCccccEEEEEeeec
Q 006652 504 EAEVAMAHAKRLIQSGVHASDIGIITPYAAQVV-LLK-------ILR-SKDDKLKNMEVSTVDGFQGREKEAIIISMVRS 574 (637)
Q Consensus 504 Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~-~l~-------~l~-~~~~~~~~i~V~Tvd~~QG~E~dvVIis~vrs 574 (637)
.-+.|+.. +.-...|+.++|||+|++...... .+. ... .....+....+.|||++||+|+|.||+.+...
T Consensus 478 ~Gd~Vm~~-~Nd~~~gl~NGdiG~V~~~~~~l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~ 556 (608)
T 1w36_D 478 EGRPVMIA-RNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ 556 (608)
T ss_dssp ----------------------------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSS
T ss_pred CCCeeeEe-eechhhcccCCCeEEEEEcCCeEEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCC
Confidence 00111111 111123677889999998753210 010 000 11123455778999999999999999987543
Q ss_pred CCCCccccCCCCCchhhhhhccccceEEEecCC
Q 006652 575 NSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTE 607 (637)
Q Consensus 575 ~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~ 607 (637)
.. ...+++.+|||+||||+.++++|+..
T Consensus 557 ~~-----~~~~~~~~Yva~tRa~~~l~l~~~~~ 584 (608)
T 1w36_D 557 RT-----PVVTRELVYTAVTRARRRLSLYADER 584 (608)
T ss_dssp CC-----SSSCHHHHHHHHTTBSSCEEEECCTT
T ss_pred cc-----chhhhhhHHhhhhhhhceEEEEECHH
Confidence 22 24477899999999999999999764
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.93 E-value=5.3e-25 Score=230.80 Aligned_cols=273 Identities=15% Similarity=0.134 Sum_probs=172.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCCCCCcChhHHHhhHHHHHhc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLR 291 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~~~~~~~~~~~~~l~~~~~~ 291 (637)
..+.+|.|+||||||+.|.+.+. ..+++++|||+.|++++.+++.+.+.. ..... .-.+++..+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-----~~~~lVlTpT~~aa~~l~~kl~~~~~~-----~~~~~----~V~T~dsfL-- 224 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVPGRQAAEMIRRRANASGII-----VATKD----NVRTVDSFL-- 224 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-----TTTCEEEESCHHHHHHHHHHHTTTSCC-----CCCTT----TEEEHHHHH--
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-----cCCeEEEeCCHHHHHHHHHHhhhcCcc-----ccccc----eEEEeHHhh--
Confidence 46899999999999999988763 268899999999999999998643210 00000 000111110
Q ss_pred CCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeecccccccccCCCCCC
Q 006652 292 GDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFD 371 (637)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~vi~~T~~~~~~~~l~~~~fd 371 (637)
++. .......+|
T Consensus 225 -------------------------------------------------------~~~-------------~~~~~~~~d 236 (446)
T 3vkw_A 225 -------------------------------------------------------MNY-------------GKGARCQFK 236 (446)
T ss_dssp -------------------------------------------------------HTT-------------TSSCCCCCS
T ss_pred -------------------------------------------------------cCC-------------CCCCCCcCC
Confidence 000 001123589
Q ss_pred EEEEecCCCcchHHH--HHHHHhCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCccccccccccCCchhH
Q 006652 372 LVIIDEAAQALEIAC--WIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHI 449 (637)
Q Consensus 372 ~vIIDEA~q~~e~~~--l~~l~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qYR~~~~I 449 (637)
+||||||+++....+ +..+.+..+++++||++||||+..... +... ..+.....+ ....++.+|||++++
T Consensus 237 ~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~~-----~~~~--~~~~~l~~~-~~~~~~~SyR~p~dv 308 (446)
T 3vkw_A 237 RLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTG-----FPYP--AHFAKLEVD-EVETRRTTLRCPADV 308 (446)
T ss_dssp EEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCSTT-----CCCC--HHHHSCCCS-EEEEECEESSCCHHH
T ss_pred EEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCCC-----ccch--hhhhhcccC-cEEEeeeEeCCCHHH
Confidence 999999997754433 344455699999999999999865431 2111 111111112 245689999999999
Q ss_pred HhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEc
Q 006652 450 MNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIIT 529 (637)
Q Consensus 450 ~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IIt 529 (637)
+.+.+.+ |++++..... ....+.+.++.+...-+. ...++ .--|||
T Consensus 309 ~~lLs~l-Y~~~V~t~s~-------~~~sv~~~~I~~~~~~~~-------------------------~~~~~-~g~iLt 354 (446)
T 3vkw_A 309 THFLNQR-YEGHVMCTSS-------EKKSVSQEMVSGAASINP-------------------------VSKPL-KGKILT 354 (446)
T ss_dssp HHHHHTT-SSSCCEECCC-------CCCCEEEEECCCGGGCCT-------------------------TTSCC-CSEEEE
T ss_pred HHHHHhh-cCCceEECCC-------cCceEEEecccccccccc-------------------------ccCCC-CCeEEE
Confidence 9999976 7765543221 234455555444210000 00011 235778
Q ss_pred ccHHHHHHHHHHhccCCCCCCce-eccCCCCCCccccEEEEEeeecCCCCccccCCCCCchhhhhhccccceEEEecCCc
Q 006652 530 PYAAQVVLLKILRSKDDKLKNME-VSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTET 608 (637)
Q Consensus 530 py~~Q~~~l~~l~~~~~~~~~i~-V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~rlnVAlTRAk~~liivg~~~~ 608 (637)
+..+.+..+.+. ++. +.|||++||.|+|.|.+....+. ....+..+..++|||+||||++|.++.-
T Consensus 355 ftq~~k~~L~~~--------G~~~~~Tv~e~QG~tf~~Vtlvr~~~~--~~~l~~~~~~~~~VALTRh~~~L~~~tv--- 421 (446)
T 3vkw_A 355 FTQSDKEALLSR--------GYADVHTVHEVQGETYADVSLVRLTPT--PVSIIARDSPHVLVSLSRHTKSLKYYTV--- 421 (446)
T ss_dssp SSHHHHHHHHTT--------TCCSCEETGGGTTCCEEEEEEEECCCS--CCTTCSTTCHHHHHHHSSEEEEEEEEES---
T ss_pred cCHHHHHHHHHh--------CCCCccCHHHcCCcccCeEEEEECCCC--CcccccCCccceEEEeecCCCEEEEEEe---
Confidence 888777777642 334 89999999999999987543322 2222345788999999999999999853
Q ss_pred cCCchHHHHHHHHHHHc
Q 006652 609 VSSDGFLKRLIEYFEEH 625 (637)
Q Consensus 609 l~~~~~~~~l~~~~~~~ 625 (637)
. +..|...+..+..-
T Consensus 422 -~-~D~~~~~i~~~~~~ 436 (446)
T 3vkw_A 422 -V-MDPLVSIIRDLERV 436 (446)
T ss_dssp -S-CCHHHHHHHHHHHS
T ss_pred -c-CChHHHHHHHhhhh
Confidence 2 55666666666653
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.91 E-value=1.5e-23 Score=251.83 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=97.2
Q ss_pred CCCEEEEecCCCcchHH--HHHHHHh----CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCC-----cccc
Q 006652 369 SFDLVIIDEAAQALEIA--CWIALLK----GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGD-----EVTS 437 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~~--~l~~l~~----~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~-----~~~~ 437 (637)
+|++|+|||+|+++..+ ++..|.. ..++++|||++|-.+.+ .|.+..+|..+...++. ...+
T Consensus 400 ~~~~IlVDEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~QsIY~F-------RgAd~~~f~~~~~~~~~~~~~~~~~i 472 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRF-------RLAEPLLFLSKYKRFTESGEGTGRKI 472 (1232)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGGCCCTT-------TTCCTHHHHHHHHHSBSSCTTSCEEE
T ss_pred CCCEEEEEccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchHHhHhc-------cCCCHHHHHHHHHHhhhhcCCCCcEe
Confidence 69999999999998775 3444444 36899999999976654 56667888888877742 1467
Q ss_pred ccccccCCchhHHhhchhhccCCc------cccCCC-CCcc----CCCCCCcEEEEEccCCcccccccCC-CCccCHHHH
Q 006652 438 MLTVQYRMHEHIMNWSSKQLYNSK------IKAHPS-GVKR----TSSTEPTLLLIDIAGCDMEEKKDEE-DSTMNEGEA 505 (637)
Q Consensus 438 ~L~~qYR~~~~I~~~~n~~fY~~~------l~~~~~-~~~~----~~~~~~~~~~id~~~~~~~~~~~~~-~s~~N~~Ea 505 (637)
.|+.|||++++|++++|.+|.... +..... .... ......++.++-.......+..... .-.....||
T Consensus 473 ~L~~NyRS~~~Il~~~n~lf~~~~~~~~~~i~y~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ea 552 (1232)
T 3u4q_A 473 DLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEA 552 (1232)
T ss_dssp EECEESSSCHHHHHHHHHHHHTTSCHHHHSSCCCTTTSCEECCCCCCCSSCSEEEEEEC-------------CHHHHHHH
T ss_pred ECCCCCCCChHHHHHHHHHHhhccccccccCCCchhhhcccCccCccCCCCCeEEEEecCCccccccccccccccHHHHH
Confidence 899999999999999999886431 100000 0000 0011222332222111000000000 001234689
Q ss_pred HHHHHHHHHHHHcC-------------CCCCeEEEEcccH
Q 006652 506 EVAMAHAKRLIQSG-------------VHASDIGIITPYA 532 (637)
Q Consensus 506 ~~v~~~v~~l~~~g-------------~~~~~I~IItpy~ 532 (637)
..|...+.+++..| +.++||+||++.+
T Consensus 553 ~~iA~~I~~l~~~~~~v~d~~~~~~r~~~~~DIAIL~R~~ 592 (1232)
T 3u4q_A 553 KAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSM 592 (1232)
T ss_dssp HHHHHHHHHHHTSCCCBC---CCCCBCCCSTTEEEEESSS
T ss_pred HHHHHHHHHHHhcCCceecccccccCCCCcCCEEEEEECc
Confidence 99999999998764 6789999998644
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.86 E-value=1e-21 Score=235.36 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=94.1
Q ss_pred CCCEEEEecCCCcchHH--HHHHHHh---CCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcCCcccccccccc
Q 006652 369 SFDLVIIDEAAQALEIA--CWIALLK---GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQY 443 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~~--~l~~l~~---~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~~~~~~~L~~qY 443 (637)
+|++|+|||+|+++..+ ++..|.. +..+++|||++|..+.+.+. +...|.++...+. ..+.|.+||
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQSIY~FRGA-------d~~~~~~~~~~~~--~~~~L~~Ny 447 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGA-------DIFTYMKARSEVH--AHYTLDTNW 447 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCCGGGTC-------CHHHHHHHHHHCC--CEEECCEET
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccccccCcCC-------CHHHHHHHHHhcC--CceeCCCCc
Confidence 69999999999997764 4555554 36899999999977765433 2223434444332 267899999
Q ss_pred CCchhHHhhchhhccCCcccc--CCCCCcc---C-----------CCCCCcEEEEEccCCcccccccCCCCccCHHHHHH
Q 006652 444 RMHEHIMNWSSKQLYNSKIKA--HPSGVKR---T-----------SSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEV 507 (637)
Q Consensus 444 R~~~~I~~~~n~~fY~~~l~~--~~~~~~~---~-----------~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~ 507 (637)
|++++|++++|.+|-...-.. ....... . ....+++.++-..+.. . ........|++.
T Consensus 448 RS~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~--~~~~~~~~ea~~ 521 (1180)
T 1w36_B 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----C--GVGDYQSTMAQV 521 (1180)
T ss_dssp TSCHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCSSC----C--CTTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCCCc----c--CcchHHHHHHHH
Confidence 999999999999885432100 0000000 0 0001123222111100 0 001123468999
Q ss_pred HHHHHHHHHH---------------cCCCCCeEEEEcccHHHHHHH
Q 006652 508 AMAHAKRLIQ---------------SGVHASDIGIITPYAAQVVLL 538 (637)
Q Consensus 508 v~~~v~~l~~---------------~g~~~~~I~IItpy~~Q~~~l 538 (637)
|...|.+++. .|+.++||+|+++.+.|...+
T Consensus 522 iA~~I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i 567 (1180)
T 1w36_B 522 CAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567 (1180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHH
Confidence 9999999886 357889999998776644333
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.66 E-value=2.2e-16 Score=147.29 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=98.1
Q ss_pred ccccCCchhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHHHHcC
Q 006652 440 TVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG 519 (637)
Q Consensus 440 ~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g 519 (637)
++|||++++|++++|.++.++.-. ......+.+..++.... ...|+..|.+.+.. ...|
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~~------~~~~~~G~~p~~~~~~~--------------~~~e~~~i~~~I~~-~~~g 60 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEAV------TAFDRQGDLPNVVVTPN--------------FEAGVDQVVDQLAM-NDSE 60 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC--------------CCCCCCEEEEESS--------------HHHHHHHHHHHHHH-HHHT
T ss_pred CCCCCChHHHHHHHHHHhcCCCcc------cCCCCCCCCCEEEEeCC--------------HHHHHHHHHHHHHH-hccC
Confidence 579999999999999888765310 00011112222222211 13688899988888 5555
Q ss_pred CCCCeEEEEcccHHHHHHHHHHhccC------------CCCCCceeccCCCCCCccccEEEEEeeecCCCCccccCCCCC
Q 006652 520 VHASDIGIITPYAAQVVLLKILRSKD------------DKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRR 587 (637)
Q Consensus 520 ~~~~~I~IItpy~~Q~~~l~~l~~~~------------~~~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~~~~gfl~d~~ 587 (637)
.++||||++.+.|...+.+.+... ....+|.|.|+|.+||+|||.||+..+..... ....++|
T Consensus 61 --~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~~---~~~~~~~ 135 (174)
T 3dmn_A 61 --RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENY---QREDERQ 135 (174)
T ss_dssp --TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTS---CSGGGHH
T ss_pred --CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCcccC---CChhhhc
Confidence 689999999999999888654321 11257999999999999999999987654321 1245678
Q ss_pred chhhhhhccccceEEEecC
Q 006652 588 RMNVAVTRARRQCCLVCDT 606 (637)
Q Consensus 588 rlnVAlTRAk~~liivg~~ 606 (637)
.||||+||||+.|+|++..
T Consensus 136 llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 136 LLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp HHHHHHTTEEEEEEEEEES
T ss_pred eeEEEecCcccEEEEEeCC
Confidence 9999999999999999864
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.58 E-value=1.8e-14 Score=173.12 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=93.8
Q ss_pred CEEEEecCCCcchHH--HHHHHHh-CCeEE--EeCC--------CCCCCccccCHHHHhcCcCCcHHHHHHHH--cCCcc
Q 006652 371 DLVIIDEAAQALEIA--CWIALLK-GSRCI--LAGD--------HLQLPPTVQSVEAEKKGLGRTLFERLADL--YGDEV 435 (637)
Q Consensus 371 d~vIIDEA~q~~e~~--~l~~l~~-~~~~v--lvGD--------~~QL~p~v~s~~~~~~g~~~slf~rl~~~--~~~~~ 435 (637)
++|+|||+|+++..+ ++..|.. +.+++ +||| ++|-.+.+. |.....|.++... ++...
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~r-------ga~~~~l~~~~~~~~~~~~~ 275 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMT-------GKTYYRLHQKAKELNLDITY 275 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHH-------HHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhH-------HHHHHHHHHHHHHcCCCccc
Confidence 899999999997774 4445553 45554 6699 677544332 2223345566655 45444
Q ss_pred ccccccccCCchhHHhhchhhccCCccccCCCCCccCCCCCCcEEEEEccCCcccccccCCCCccCHHHHHHHHHHHHHH
Q 006652 436 TSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRL 515 (637)
Q Consensus 436 ~~~L~~qYR~~~~I~~~~n~~fY~~~l~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l 515 (637)
.+.|..|||+++.|.++.++.+....- . .......++.++...+ ...|++.|+..+.++
T Consensus 276 ~~~L~~nyRs~~~il~~i~~~~~~~~~----~---~~~~~~~~i~i~~~~~--------------~~~Ea~~ia~~I~~l 334 (1166)
T 3u4q_B 276 KELSGTERHTKTPELAHLEAQYEARPA----I---PYAEKQEALTVMQAAN--------------RRAELEGIAREIHAL 334 (1166)
T ss_dssp EEECSCSTTTTCHHHHHHHHSSSCSSC----C---CCCSCCSSEEEEEESS--------------HHHHHHHHHHHHHHH
T ss_pred ceecCCCCCCCCHHHHHHHHhHhhcCC----C---ccCCCCCCeEEEEcCC--------------hHHHHHHHHHHHHHH
Confidence 678999999999999888765532110 0 0011223344433221 237899999999999
Q ss_pred HH-cCCCCCeEEEEcccH-HHHHHHHHH
Q 006652 516 IQ-SGVHASDIGIITPYA-AQVVLLKIL 541 (637)
Q Consensus 516 ~~-~g~~~~~I~IItpy~-~Q~~~l~~l 541 (637)
+. .|++++||+||++.+ .|...+...
T Consensus 335 ~~~~g~~~~diAVL~R~~~~~~~~i~~~ 362 (1166)
T 3u4q_B 335 VREKGYRYKDVAILARQPEDYKDMVKEV 362 (1166)
T ss_dssp HHTSCCCGGGEEEEESCGGGTHHHHHHH
T ss_pred HHhcCCChhheEEEeCChHHHHHHHHHH
Confidence 88 789999999999997 477666543
No 16
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.90 E-value=3.2e-09 Score=101.98 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc------CCeEEEeccchHHHHH-HHHHhc
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR------GSKILACAASNIAVDN-IVERLV 261 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------~~~ILv~a~tn~Avd~-l~~rL~ 261 (637)
...|++.|.+|+..++. ....+|.||+|||||.+....+..++.. +.++|+++|+...++. +.+.+.
T Consensus 31 ~~~l~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CCCCCHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred CCCchHHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 45799999999999887 5678999999999999998888776543 6799999999998887 544443
No 17
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.88 E-value=9.9e-09 Score=100.39 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCce-EEEe
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVR-LVRL 270 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~-~vri 270 (637)
...|++.|.+|+..++. .+-.+|.||+|+|||.++...+..+ +.++|+++|+...+.++.+.+.+.+.. +..+
T Consensus 91 ~~~l~~~Q~~ai~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~ 164 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV-DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEF 164 (237)
T ss_dssp CCCCCHHHHHHHHHHTT-TSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEE
T ss_pred CCCcCHHHHHHHHHHHh-CCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 46799999999998887 4569999999999999987776553 789999999999999999998776555 4433
No 18
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.81 E-value=2.2e-08 Score=95.57 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH------cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+++..++. ....++.+|+|||||.+....+...+. .+.++|+++||...+..+.+++.+.
T Consensus 22 ~~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE-GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcC-CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 4689999999999887 567999999999999986655555432 4678999999999999999888654
No 19
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.73 E-value=5e-08 Score=95.26 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-------HcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-------KRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-------~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ....+|.+|.|||||.+....+...+ ..+.++|+++||...+..+.+.+.+.
T Consensus 46 ~~~~~~Q~~~i~~~~~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ-GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CBCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999887 56789999999999997665444443 24679999999999999998887654
No 20
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.72 E-value=3.1e-08 Score=99.63 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCC-eEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++.|.+|+..++. .+-.+|.+|+|+|||.++...+..++..+. ++|+++||+..+.+..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 3789999999999887 456788999999999999888887776654 9999999999999999888654
No 21
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.71 E-value=4.5e-08 Score=94.67 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-H--cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-K--RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~--~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-.+|.+|+|||||.+..-.+.+.+ . .+.++|+++||...+..+.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~-~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 4689999999999887 55789999999999988444333333 2 3569999999999999888877543
No 22
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.70 E-value=6.8e-08 Score=93.75 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH---------HcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV---------KRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~---------~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-.++.+|.|||||.+..-.+...+ ..+.++|+++||+..+..+.+++.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~-~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ-GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 4689999999999887 56789999999999987554443332 15678999999999999998887654
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.69 E-value=8.7e-08 Score=91.29 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++. ..-+++.+|+|||||.+....+...+. .+.++|+++||...+..+.+++.+
T Consensus 24 ~~~~~~Q~~~i~~~~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 93 (206)
T 1vec_A 24 EKPSPIQEESIPIALS-GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQ 93 (206)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcc-CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHH
Confidence 4689999999999887 567899999999999876655544432 356899999999999988887754
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.69 E-value=5.5e-08 Score=101.27 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|++|+..++......++.+|+|||||.+....+..++.. +.++|+++||...++++.+++.+.
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 468999999999998844689999999999999887777666543 779999999999999999887653
No 25
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.66 E-value=1.9e-07 Score=92.01 Aligned_cols=68 Identities=21% Similarity=0.137 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH-HHHc--CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ-EVKR--GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~-l~~~--~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-.++.+|.|||||.+....+.. +... +.++|+++||...+..+.+++.+.
T Consensus 64 ~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ-GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999887 567899999999999876554444 3443 457999999999999998877543
No 26
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.66 E-value=1.6e-07 Score=90.51 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-.++.+|+|||||.+....+...+.. +.++|+++||...++.+.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 35 EHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 3589999999999887 4568999999999998877666665443 358999999999999988776543
No 27
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.65 E-value=6.2e-08 Score=94.72 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-++|.+|+|||||.+....+...+. .+.++|+++||...+..+.+.+.+.
T Consensus 51 ~~~~~~Q~~ai~~i~~-~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK-GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 4589999999999887 557899999999999886555554443 4579999999999999998887653
No 28
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.62 E-value=2.6e-07 Score=90.49 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH--------cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK--------RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~--------~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++. ..-.++.+|.|||||.+..-.+...+. .+.++|+++||+..+..+.+.+.+
T Consensus 50 ~~~~~~Q~~~i~~~~~-g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS-GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4689999999999887 567899999999999885444433332 367899999999999998877654
No 29
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.62 E-value=1.9e-07 Score=104.16 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHc---------CCeEEEeccchHHHHHHH-HHh
Q 006652 195 SNLDHSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKR---------GSKILACAASNIAVDNIV-ERL 260 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~---------~~~ILv~a~tn~Avd~l~-~rL 260 (637)
..|.+.|.+||..++. ..+-.++.+|.|||||.++..++..++.. +.++|+++||+..++... +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4799999999998875 34567999999999999999999888874 489999999999999988 665
Q ss_pred cCCCc
Q 006652 261 VPHRV 265 (637)
Q Consensus 261 ~~~~~ 265 (637)
...+.
T Consensus 257 ~~~~~ 261 (590)
T 3h1t_A 257 TPFGD 261 (590)
T ss_dssp TTTCS
T ss_pred Hhcch
Confidence 55443
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.61 E-value=1.6e-07 Score=99.77 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.+++.|.+|+..++. ...+++.+|.|||||.+....+..+...+.++|+++||...+..+.+++.+.
T Consensus 21 ~~~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp CCCHHHHHHHHHHTT-TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 578999999999887 5578999999999999666666666678899999999999999999998773
No 31
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.61 E-value=2.5e-07 Score=91.33 Aligned_cols=68 Identities=22% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc------------CCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR------------GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------------~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++. ..-.++.+|.|||||.+....+...+.. +.++|+++||...+..+.+++.+
T Consensus 44 ~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 122 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE-HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQK 122 (253)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHH
Confidence 4689999999999887 5578999999999998766555544432 35899999999999998887755
Q ss_pred C
Q 006652 263 H 263 (637)
Q Consensus 263 ~ 263 (637)
.
T Consensus 123 ~ 123 (253)
T 1wrb_A 123 F 123 (253)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.61 E-value=1.7e-07 Score=101.48 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCce
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVR 266 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~ 266 (637)
...|++.|.+|+..++. .+-.+|.||.|+|||.+....+..+ +.++||++|+...+.+..+++.+.+.+
T Consensus 91 ~~~l~~~Q~~ai~~i~~-~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~ 159 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV-DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEE 159 (472)
T ss_dssp CCCBCHHHHHHHHHHTT-TTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGG
T ss_pred CCCcCHHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCc
Confidence 46799999999998887 5569999999999999988777654 789999999999999999999886555
No 33
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.60 E-value=2.4e-07 Score=92.04 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH-HH------cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE-VK------RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l-~~------~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++-|.+++..++. ..-.+++||.|||||.+..-.+.+. .+ .+.++|+++||...+.++.+.+.+.
T Consensus 75 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE-GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CBCCHHHHHHHHHHHH-TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3589999999999887 4568999999999998855544443 33 4788999999999999998887653
No 34
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.56 E-value=2.6e-07 Score=89.71 Aligned_cols=68 Identities=21% Similarity=0.131 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHH-HHHHH--cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII-LQEVK--RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i-~~l~~--~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+++..++. ..-.++.+|.|||||.+..-.+ ..+.. .+.++|+++||...+..+.+++.+.
T Consensus 45 ~~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRC-GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3589999999999887 5678999999999998754433 33332 3579999999999999998887654
No 35
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.56 E-value=2.5e-07 Score=97.67 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++.|.+|+..++. ..-.+|.+|+|||||.+....+...+. .+.++|+++||...+..+.+++.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~-~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT-GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 3689999999999887 456899999999999877666655543 3568999999999999888877643
No 36
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.56 E-value=3.3e-07 Score=94.14 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++.|++|+..++. ....+|.+|+|+|||.+....+. ..+.++|+++|+...+.++.+++.+.
T Consensus 15 ~~l~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ-GKNVVVRAKTGSGKTAAYAIPIL---ELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHH---HHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEcCCCCcHHHHHHHHHH---hhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999998887 56799999999999987655443 35889999999999999999888643
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.55 E-value=2.3e-07 Score=101.45 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCC-eEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++.|.+||..++. ..-.+|.||.|+|||.++...+..++..++ ++|+++||...+.+..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~~~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHH-HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999887 467899999999999999888888776665 9999999999999999988654
No 38
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.54 E-value=1.8e-07 Score=103.04 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=110.6
Q ss_pred CCCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCC
Q 006652 194 NSNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~ 272 (637)
...++.+|.+|+...+. ..+..+|.|++|+|||+++-..+..+. .+++|||||..|+..+.+-..+. +.+
T Consensus 173 ~~~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~~~~~~-i~~----- 243 (671)
T 2zpa_A 173 TGAPQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQFAGEK-FRF----- 243 (671)
T ss_dssp CSSCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHHHHGGG-CCB-----
T ss_pred CCCCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHHHhhCC-eEE-----
Confidence 34789999999988776 356889999999999988777777664 35799999999999877653210 000
Q ss_pred CCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Q 006652 273 PARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADV 352 (637)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~~~v 352 (637)
+.|. . ++.
T Consensus 244 ---~~Pd-------~----------------------------------------------------------~~~---- 251 (671)
T 2zpa_A 244 ---IAPD-------A----------------------------------------------------------LLA---- 251 (671)
T ss_dssp ---CCHH-------H----------------------------------------------------------HHH----
T ss_pred ---eCch-------h----------------------------------------------------------hhh----
Confidence 0000 0 000
Q ss_pred eeeecccccccccCCCCCCEEEEecCCCcchHHHHHHHHhCCeEEEeCCCCCCCccccCHHHHhcCcCCcHHHHHHHHcC
Q 006652 353 VLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 432 (637)
Q Consensus 353 i~~T~~~~~~~~l~~~~fd~vIIDEA~q~~e~~~l~~l~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~slf~rl~~~~~ 432 (637)
.....|++|||||+.+..+-+...+....+++++..-++... .+..+--++....+
T Consensus 252 -------------~~~~~dlliVDEAAaIp~pll~~ll~~~~~v~~~tTv~GYEG-----------tGrgf~lk~~~~L~ 307 (671)
T 2zpa_A 252 -------------SDEQADWLVVDEAAAIPAPLLHQLVSRFPRTLLTTTVQGYEG-----------TGRGFLLKFCARFP 307 (671)
T ss_dssp -------------SCCCCSEEEEETGGGSCHHHHHHHHTTSSEEEEEEEBSSTTB-----------BCHHHHHHHHHTST
T ss_pred -------------CcccCCEEEEEchhcCCHHHHHHHHhhCCeEEEEecCCcCCC-----------cCcccccccHhhcC
Confidence 012469999999996655544443334579999998887443 34444456666667
Q ss_pred CccccccccccCC--chhHHhhchhhcc
Q 006652 433 DEVTSMLTVQYRM--HEHIMNWSSKQLY 458 (637)
Q Consensus 433 ~~~~~~L~~qYR~--~~~I~~~~n~~fY 458 (637)
....+.|+.-.|= +..|-.|.++.+-
T Consensus 308 ~~~~~~L~~piR~a~~DplE~wl~~~ll 335 (671)
T 2zpa_A 308 HLHRFELQQPIRWAQGCPLEKMVSEALV 335 (671)
T ss_dssp TCEEEECCSCSSSCTTCHHHHHHHHHHT
T ss_pred CCcEEEccCceecCCCCCHHHHHHHhhC
Confidence 6667889988887 6689999887774
No 39
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.52 E-value=5.8e-07 Score=96.99 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|.+.|.+++..++. . -.+|.+|+|+|||.++...+..++. .+.++|+++|+...+.+..+.+.+.
T Consensus 8 ~~l~~~Q~~~i~~~~~-~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE-T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HCCCHHHHHHHHHGGG-S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh-C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3689999999999887 3 7899999999999998888777664 6889999999999999998887654
No 40
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.52 E-value=9.3e-08 Score=92.17 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++. ....++.+|.|||||.+....+...+. .+.++|+++||...+..+.+.+.+
T Consensus 25 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 94 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR-GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLK 94 (219)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHH
Confidence 4589999999999887 567899999999999886555544433 356899999999999998887654
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.51 E-value=5.3e-07 Score=99.52 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++.|.+|+..++. ..-.+|.+|.|||||.+....+.+.+.. +.++|+++||...+....+.+.+.
T Consensus 6 ~~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp --CCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999987 5578999999999999888777777665 789999999999998888877654
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.47 E-value=6e-07 Score=98.96 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|.+.|.+|+..++. ..-++|.+|.|+|||.+....+...+.. +.++|+++||...+....+.+.+.
T Consensus 3 ~~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhC-CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3689999999999987 5678999999999999888877777665 789999999999988888877654
No 43
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.45 E-value=2.1e-07 Score=91.34 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH----cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK----RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~----~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-.++.+|.|||||.+..-.+...+. .+.++|+++||...+..+.+.+.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH-GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999887 456899999999999885554444443 4568999999999999998887654
No 44
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.45 E-value=8.2e-07 Score=93.29 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|++.|.+|+..++. ..-.+|.+|+|+|||.+....+...+. .+.++|+++||...+.++.+.+.+.
T Consensus 29 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp CSCCHHHHHHHHHHTT-TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 3589999999999887 567899999999999877666655543 2569999999999999988776543
No 45
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.45 E-value=7.9e-07 Score=94.20 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|++|+..++. ..-.++.+|.|||||.+....+.+.+. .+.++|+++||...+..+.+.+.+.
T Consensus 58 ~~~~~~Q~~ai~~i~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK-GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 3589999999999887 556899999999999887766665543 4689999999999999998877653
No 46
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.44 E-value=5.6e-07 Score=94.61 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..|++.|++|+..++. ..-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+.+.+
T Consensus 42 ~~~~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~ 111 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMA 111 (394)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 4689999999999887 566899999999999886555544433 367999999999999998887654
No 47
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.44 E-value=1.1e-06 Score=99.88 Aligned_cols=70 Identities=23% Similarity=0.210 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHcc-----CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDHSQKDAISKALSS-----KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~-----~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...|++.|++|+..++.. ....+|+||.|||||.+....+...+..|.++++++||...+..+.+++.+.
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 448999999999988762 1368999999999999998888888888999999999999999888877543
No 48
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.43 E-value=6.5e-07 Score=94.05 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++.. ....+|.+|.|||||.+....+...+. .+.++|+++||...+..+.+++.+.
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999873 267899999999999987766655543 4679999999999999999887653
No 49
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.41 E-value=8.9e-07 Score=93.81 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-.+|.+|.|||||.+....+...+. .+.++|+++||...+..+.+++.+.
T Consensus 61 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK-GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhC-CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 4689999999999887 456899999999999986666655543 4678999999999999998887654
No 50
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.40 E-value=1.7e-06 Score=91.68 Aligned_cols=67 Identities=25% Similarity=0.210 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHH-HHHHHHHcC--------------------CeEEEeccchHHH
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE-IILQEVKRG--------------------SKILACAASNIAV 253 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~-~i~~l~~~~--------------------~~ILv~a~tn~Av 253 (637)
..+++.|.+|+..++. ...++|.+|.|||||.+..- ++..+...+ .++|+++||...+
T Consensus 36 ~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 114 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE-KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELA 114 (417)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHcc-CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHH
Confidence 4689999999998886 56789999999999986443 444444322 4799999999999
Q ss_pred HHHHHHhcC
Q 006652 254 DNIVERLVP 262 (637)
Q Consensus 254 d~l~~rL~~ 262 (637)
..+.+++.+
T Consensus 115 ~q~~~~~~~ 123 (417)
T 2i4i_A 115 VQIYEEARK 123 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.38 E-value=8.4e-07 Score=101.26 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH-HHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE-VKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..|++.|.+|+..++..+..++|.||.|||||+++...+... ...+.++++++|+...+.+..+++..
T Consensus 29 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp CBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 478999999999855557899999999999999986665544 44789999999999999999998843
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.36 E-value=1.6e-06 Score=101.57 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 192 PFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.+...|++.|.+||..++. ...++|.||.|||||.+....+..+...+.+++|++|+...+....+++.+.
T Consensus 35 ~~~f~l~~~Q~~aI~~il~-g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQ-GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHT-TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3556799999999998887 6789999999999999877778788888999999999999999999999875
No 53
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.35 E-value=1.5e-06 Score=100.22 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...|.+.|.+|+..++. ..-.+|.+|.|||||.+....+..++.. +.++||++||...+.+..+.+.+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~-~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh-CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 35789999999999987 5678999999999999888888777765 789999999999998888777654
No 54
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.3e-06 Score=103.48 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 192 PFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.+...|++.|.+|+..++. ...++|.||.|||||.+....+...+..+.++++++||...+....+++.+.
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~ 250 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 250 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 3456799999999998776 6788999999999999988888888889999999999999999999988764
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.33 E-value=5.4e-07 Score=102.58 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC------CeEEEeccchHHHHHH-HHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG------SKILACAASNIAVDNI-VERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~------~~ILv~a~tn~Avd~l-~~rL~~~ 263 (637)
..|.+.|.+|+..++. ..-++|.+|.|+|||.+....+..++..+ .++||++|+...+... .+.+.+.
T Consensus 6 ~~l~~~Q~~~i~~il~-g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE-GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp -CCCHHHHHHHHHHHS-SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHh-CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 4689999999999997 56799999999999999888887766542 7999999999998888 7777654
No 56
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.32 E-value=9.1e-07 Score=101.00 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHH-HHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE-IILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~-~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..|++.|.+++..++.....++|.||.|||||+++.- ++..+...+.++++++|+...+.++.+++.+
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 4689999999998444478999999999999998744 4444555789999999999999999999854
No 57
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.31 E-value=2.5e-06 Score=97.07 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcC-----CeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-----SKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-----~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..|.+.|.+++..++. ...++|.+|.|+|||.+....+...+..+ .++|+++||...+.+..+.+.+.
T Consensus 12 ~~lr~~Q~~~i~~~l~-g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp -CCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 5689999999999887 56789999999999998887777665432 78999999998888887776543
No 58
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.31 E-value=2.3e-06 Score=101.18 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++.|.+|+..++. ..-+++++|.|||||.+..-.+..++..+.++|+++||...+..+.+++.+.
T Consensus 77 f~pt~iQ~~ai~~il~-g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp SCCCHHHHHHHHHHTT-TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 3689999999999887 5578999999999999777777777788999999999999999999999874
No 59
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.7e-06 Score=101.50 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+...|++.|.+|+..++. ...++|.||.|+|||.+....+...+..+.++|+++||...+....+.+.+.
T Consensus 83 ~~f~L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHH
Confidence 455799999999999876 6789999999999999887777777788999999999999999988887654
No 60
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.28 E-value=1.7e-06 Score=91.59 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++.. ...++|.+|.|||||.+....+...+. .+.++|+++||...+..+.+++.+
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 117 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 117 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHH
Confidence 57899999999999873 368899999999999886555544433 234899999999999999776654
No 61
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.28 E-value=9e-06 Score=96.82 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCCCCCHHHHHHHHHHHcc---CC--eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 193 FNSNLDHSQKDAISKALSS---KN--VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~---~~--~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
+...+++.|.+|+..++.. .. -.+|+||.|+|||.++...+..++..|.++|+++||...+....+++.+
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHH
Confidence 4556899999999988861 22 7899999999999998877777778899999999999999888877653
No 62
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.27 E-value=8.9e-07 Score=100.78 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..|++.|.+++...+. ...++|.||.|||||+++...+...+..+.++++++|+...+.+..+++..
T Consensus 24 ~~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~ 90 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKK 90 (702)
T ss_dssp -CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHH
Confidence 3688999999998665 778999999999999988777766666788999999999999999999853
No 63
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.27 E-value=4e-06 Score=89.56 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHH-HHHHHHHc-------CCeEEEeccchHHHHHHHHHhcCC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE-IILQEVKR-------GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~-~i~~l~~~-------~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+++-|++|+..++. ..-.++.+|.|||||.+..- ++..+... +.++|+++||...+..+.+.+.+.
T Consensus 77 ~~pt~iQ~~ai~~i~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS-GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 3589999999999887 56789999999999986443 44455543 458999999999999998877653
No 64
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.22 E-value=7.9e-07 Score=97.12 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHc---CCeEEEeccchHHHHHHHHHhcCC
Q 006652 196 NLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.+++.|.+|+..++.. ...++|.||.|||||.+....+...+.. +.++|+++|++..++++.+++.+.
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 5789999999998873 3789999999999999876666555443 458999999999999999987654
No 65
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.21 E-value=2.5e-06 Score=99.80 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCeEEEeccchHHHHHHHHHhcCC
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...|.+.|.+|+..++. ..-.+|.+|.|+|||.+....+..++.. +.++||++||...+.+..+.+.+.
T Consensus 246 ~~~~r~~Q~~ai~~il~-g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 35689999999999987 5678999999999999887777766654 789999999999998888777654
No 66
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.20 E-value=5.3e-06 Score=80.70 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH-HHcCC----eEEEeccchHHHHHHHHHhcC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE-VKRGS----KILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~----~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.+.+.|.+++..+.. ...++|.||.|||||+.+...+... ...+. ++++++|+...+..+.+++..
T Consensus 61 p~~~~q~~~i~~i~~-g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 61 PVKKFESEILEAISQ-NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGGHHHHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 467789999988876 7799999999999999877665543 33443 899999999999998888753
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.18 E-value=3.8e-06 Score=84.97 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHH-HHHHHHHHc--CCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVV-EIILQEVKR--GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~-~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++-|..|+..++.. ..-+++++|.|||||.+.. .++..+... +.++|+++||...+..+.+.+..
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~ 184 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHH
Confidence 46789999999988873 2578999999999998744 344333332 34799999999999988766654
No 68
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=98.17 E-value=8.1e-06 Score=74.05 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHH-HHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 198 DHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVV-EIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 198 n~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~-~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
+..|..|+...+. .+++.+|+|+.||+||++.+ +++...-+.|++|.++||+..+...+.+..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~ 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc
Confidence 4789999998876 56799999999999999844 444444567999999999999999988774
No 69
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.14 E-value=3.1e-06 Score=91.65 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHcC---CeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRG---SKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~---~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++.. ...++++||.|||||.+....+...+..+ .++|+++||...+..+.+.+.+
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 45788899999998873 36899999999999988655444444332 3899999999999998666543
No 70
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.12 E-value=4.3e-06 Score=80.21 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=34.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
..+.+|.||||+||||.+..++..+...|.+|++..|.-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 458899999999999999999999999999999997643
No 71
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.11 E-value=8.5e-06 Score=90.47 Aligned_cols=68 Identities=24% Similarity=0.211 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHc-------CCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKR-------GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~-------~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++.. ..-+++++|.|||||.+..-.+...+.. +.++||++||...+..+.+.+.+
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 46899999999999842 4578999999999998755555444432 24899999999999999888765
No 72
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.10 E-value=5.6e-06 Score=91.62 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHcC-------CeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRG-------SKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-------~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..+++.|.+|+..++.. ..-+++.+|.|||||.+..-.+.+.+..+ .++|+++||...+..+.+.+.+
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 45899999999999852 45789999999999987555444444332 4899999999999999888765
No 73
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.07 E-value=1.5e-05 Score=93.60 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHcCC--eEEEeccchHHHHHHHHHh
Q 006652 194 NSNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRGS--KILACAASNIAVDNIVERL 260 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~--~ILv~a~tn~Avd~l~~rL 260 (637)
...|.+.|.+|+..++.. .+-.++.++.|+|||.++..++..+...|. ++||++|+ ..+.+....+
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHH
Confidence 467999999999988873 346789999999999999999999888765 99999999 6666666655
No 74
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.04 E-value=9.9e-06 Score=95.77 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+ +-|.+++..++. ...+++.||.|||||....-++..+...+.++|+++||...+..+.+++.+.
T Consensus 58 p-~iQ~~ai~~il~-g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILR-KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHT-TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh-CCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 6 999999999997 5688999999999998666667777778899999999999999998887643
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.03 E-value=1.3e-05 Score=88.28 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCCHHHHHHHH---HHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC----CceEE
Q 006652 196 NLDHSQKDAIS---KALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH----RVRLV 268 (637)
Q Consensus 196 ~Ln~~Q~~Av~---~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~----~~~~v 268 (637)
.+-+.|.+++. .++......+|++|.|||||.+..--+.. .+.+|++++||+..++.+.+.+... +++++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 35678988554 45555678999999999998754333222 6789999999999999998877665 44444
Q ss_pred EeC
Q 006652 269 RLG 271 (637)
Q Consensus 269 rig 271 (637)
-+.
T Consensus 80 ~l~ 82 (551)
T 3crv_A 80 FLV 82 (551)
T ss_dssp ECC
T ss_pred EEc
Confidence 443
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.01 E-value=1.6e-05 Score=86.59 Aligned_cols=143 Identities=20% Similarity=0.232 Sum_probs=93.6
Q ss_pred CCCCCCHHHHHHHHHHH---ccCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CeEEEeccchHHHHHHHHHhcCCC--c
Q 006652 193 FNSNLDHSQKDAISKAL---SSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERLVPHR--V 265 (637)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rL~~~~--~ 265 (637)
+...|.+.|.++|..+. ....-.++..+.|+|||.++..++..+...+ .++||++|+. .+.+..+.+.+.. .
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAPHL 112 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCTTS
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCCCc
Confidence 45679999999987654 2344577888999999999998888887654 7899999965 5666666665431 2
Q ss_pred eEEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006652 266 RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTD 345 (637)
Q Consensus 266 ~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (637)
++..+..... ..
T Consensus 113 ~v~~~~g~~~--------------------------------------------------------------------~~ 124 (500)
T 1z63_A 113 RFAVFHEDRS--------------------------------------------------------------------KI 124 (500)
T ss_dssp CEEECSSSTT--------------------------------------------------------------------SC
T ss_pred eEEEEecCch--------------------------------------------------------------------hc
Confidence 2221111000 00
Q ss_pred HhhcCceeeeeccccccc-ccCCCCCCEEEEecCCCcchH--HHHHHHH---hCCeEEEeCCCCC
Q 006652 346 VIKNADVVLTTLTGAVSR-KLDNTSFDLVIIDEAAQALEI--ACWIALL---KGSRCILAGDHLQ 404 (637)
Q Consensus 346 il~~~~vi~~T~~~~~~~-~l~~~~fd~vIIDEA~q~~e~--~~l~~l~---~~~~~vlvGD~~Q 404 (637)
....++|+++|....... .+....|++||||||..+..+ .....+. ...++.|-|=|-|
T Consensus 125 ~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 125 KLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp CGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCST
T ss_pred cccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCC
Confidence 134578888887765432 244568999999999877433 1222222 2367888898876
No 77
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.99 E-value=9.1e-05 Score=68.85 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=47.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchH----HHHHHHHHhcCCCceEEEeCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI----AVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~----Avd~l~~rL~~~~~~~vrig~ 272 (637)
..+.++|.+++|+||||.+..++...+..|.+|+++-|-.. .-.++.++| ++.+.+.|.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g~ 89 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH---GVEFQVMAT 89 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG---TCEEEECCT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC---CcEEEEccc
Confidence 46899999999999999999999999999999999977542 233455555 367777775
No 78
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.99 E-value=4.3e-05 Score=80.51 Aligned_cols=46 Identities=35% Similarity=0.407 Sum_probs=35.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec-cc--hHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-AS--NIAVDNIVE 258 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~t--n~Avd~l~~ 258 (637)
.++++.||||+|||||+..++..+...|.+|++++ .+ ..|.+.+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~ 146 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQ 146 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHH
Confidence 37789999999999999999999998998887654 33 234444443
No 79
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.99 E-value=1.8e-05 Score=74.74 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=34.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
.+.++.||+|+||||.+..++..+...|.+|++..|.-
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 47789999999999999999999999999999998753
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.90 E-value=2.2e-05 Score=86.24 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHH---HHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCC
Q 006652 196 NLDHSQKDAISK---ALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 196 ~Ln~~Q~~Av~~---~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~ 272 (637)
.+.+.|.+++.. ++......+|++|.|||||.+.. +- .+..+.+|++++||+..++.+.+.+...+++++.+..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l--~~-~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVE--VL-GMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHH--HH-HHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHH--HH-HHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 467789886543 44456789999999999996432 22 2345789999999999999999988877766665554
Q ss_pred C
Q 006652 273 P 273 (637)
Q Consensus 273 ~ 273 (637)
.
T Consensus 84 r 84 (540)
T 2vl7_A 84 K 84 (540)
T ss_dssp -
T ss_pred C
Confidence 3
No 81
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.90 E-value=4.1e-05 Score=84.76 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig 271 (637)
..+.+.|.++|..++. ..-+++.+|.|+|||.+..--+ +..+.++||++|+...+....++|.+.++.+..+.
T Consensus 43 ~~~rp~Q~~~i~~il~-g~d~lv~~pTGsGKTl~~~lpa---l~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~ 115 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA-GKEVFLVMPTGGGKSLCYQLPA---LCSDGFTLVICPLISLMEDQLMVLKQLGISATMLN 115 (591)
T ss_dssp CSCCTTHHHHHHHHHT-TCCEEEECCTTSCTTHHHHHHH---HTSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEECCCChHHHHHHHHH---HHcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4678899999999998 5568999999999997543222 23466999999999999999999887776655443
No 82
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.88 E-value=4.7e-05 Score=81.27 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=46.5
Q ss_pred cCCeEEEEcCCCCchHHHH-HHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCc
Q 006652 211 SKNVFMLHGPPGTGKTTTV-VEIILQEVKRGSKILACAASNIAVDNIVERLVPHRV 265 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti-~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~ 265 (637)
.....+|+||.|||||.+. ..++..+...+.++|+++||...+.++.+.+...++
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v 62 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDV 62 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCe
Confidence 3568999999999999984 556666677788999999999999999999986654
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.87 E-value=0.00016 Score=81.00 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHc--------cCCeEEEEcCCCCchHHHHHHHHHHHHHcC-------CeEEEeccchHHHHHHHH
Q 006652 194 NSNLDHSQKDAISKALS--------SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-------SKILACAASNIAVDNIVE 258 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~--------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-------~~ILv~a~tn~Avd~l~~ 258 (637)
...|-+.|+++|...+. ...-.++.-+.|+|||.+++.++..+...+ .++||++|+ ..+.+-.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 35789999999987653 223467888999999999999999987653 469999997 55666655
Q ss_pred HhcCC---CceEEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q 006652 259 RLVPH---RVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEE 335 (637)
Q Consensus 259 rL~~~---~~~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 335 (637)
.+.+. ....+.+.+..+ ... .
T Consensus 132 E~~~~~~~~~~~~~~~~g~~---~~~--------------------~--------------------------------- 155 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSK---DEI--------------------D--------------------------------- 155 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCH---HHH--------------------H---------------------------------
T ss_pred HHHHHcCCCeeEEEEeCCCH---HHH--------------------H---------------------------------
Confidence 55433 122232221110 000 0
Q ss_pred HHHHHHHHHHHh------hcCceeeeecccccc--cccCCCCCCEEEEecCCCcchH--HH---HHHHHhCCeEEEeCCC
Q 006652 336 RKRQQLAVTDVI------KNADVVLTTLTGAVS--RKLDNTSFDLVIIDEAAQALEI--AC---WIALLKGSRCILAGDH 402 (637)
Q Consensus 336 ~~~~~~~~~~il------~~~~vi~~T~~~~~~--~~l~~~~fd~vIIDEA~q~~e~--~~---l~~l~~~~~~vlvGD~ 402 (637)
......+ ...+|+++|...... ..+....|++||+|||..+..+ .. +..+....++.|-|=|
T Consensus 156 -----~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTP 230 (644)
T 1z3i_X 156 -----SKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTP 230 (644)
T ss_dssp -----HHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSC
T ss_pred -----HHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCc
Confidence 0001111 236788888776542 3455678999999999877322 22 2223234789999998
Q ss_pred CC
Q 006652 403 LQ 404 (637)
Q Consensus 403 ~Q 404 (637)
-|
T Consensus 231 iq 232 (644)
T 1z3i_X 231 IQ 232 (644)
T ss_dssp SG
T ss_pred cc
Confidence 77
No 84
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.87 E-value=5.6e-05 Score=82.58 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig 271 (637)
..+.+.|.+++..++. ..-++|.+|.|+|||.+.. +-.+ ..+.++||++|+.+.+.+..+++.+.++.+..+.
T Consensus 24 ~~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~--lp~l-~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~ 96 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS-GRDCLVVMPTGGGKSLCYQ--IPAL-LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLN 96 (523)
T ss_dssp SSCCTTHHHHHHHHHT-TCCEEEECSCHHHHHHHHH--HHHH-HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEECCCCcHHHHHHH--HHHH-HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEe
Confidence 3578899999999987 5578899999999996433 2222 3456899999999999999999988776655443
No 85
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.86 E-value=2.6e-05 Score=91.14 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHcc-------------CCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEeccchHHHHHHHHHh
Q 006652 196 NLDHSQKDAISKALSS-------------KNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~-------------~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rL 260 (637)
.+.+.|..||..++.. ..-.+|+.|.|||||.++..++..+... ..+||+++|++..++.+.+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 4889999999988751 1357999999999999987776433322 369999999999999988877
Q ss_pred cCC
Q 006652 261 VPH 263 (637)
Q Consensus 261 ~~~ 263 (637)
...
T Consensus 351 ~~f 353 (1038)
T 2w00_A 351 QRF 353 (1038)
T ss_dssp HTT
T ss_pred HHh
Confidence 654
No 86
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.86 E-value=0.0001 Score=77.73 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=40.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec-c--chHHHHHHHHHhcCCCceEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-A--SNIAVDNIVERLVPHRVRLV 268 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~--tn~Avd~l~~rL~~~~~~~v 268 (637)
.++++.||||+|||||+..++.++.+.|.+|++++ . ...|++.+...-...++.++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 47789999999999999999999999998887665 2 23455555443333344443
No 87
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.85 E-value=2.9e-05 Score=86.97 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=49.5
Q ss_pred HHHHHHH-----ccCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCc
Q 006652 203 DAISKAL-----SSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRV 265 (637)
Q Consensus 203 ~Av~~~l-----~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~ 265 (637)
.+|..++ ......+|+||.|||||.+ +..++..+...+.++|+++||...+.++.+++...++
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~i 295 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPV 295 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCCe
Confidence 5665544 2367899999999999998 5666667777889999999999999999999976643
No 88
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.85 E-value=2.5e-05 Score=72.50 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=34.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
.+.+|.||.|+|||+-+..++......+.+|++.+|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4889999999999999999999999999999999875
No 89
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.83 E-value=4.4e-05 Score=93.92 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-H-cCCeEEEeccchHHHHHHHHHhc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-K-RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~-~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
..+|+-|.+++...+.++..++|.+|.|||||.+..-.+...+ + .+.++++++|+.+.+.+..+.+.
T Consensus 925 ~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~ 993 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWY 993 (1724)
T ss_dssp SBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHH
Confidence 4589999999999988778899999999999997665555444 3 36789999999999998877664
No 90
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.80 E-value=6.4e-05 Score=80.74 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=47.4
Q ss_pred HccCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 209 LSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 209 l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+.....++|.||.|||||.+ +..++..+...+.++|+++||...+.++.+++...
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~ 73 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL 73 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc
Confidence 44567899999999999997 66777777778899999999999999999998643
No 91
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.78 E-value=4e-05 Score=82.14 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=50.4
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 204 AISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
++..++..++.+++.||.|||||.+ +..++..+...+.++|+++||...+.++.+.+...
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc
Confidence 3445565677889999999999995 77777778888899999999999999999998643
No 92
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.71 E-value=0.00011 Score=69.84 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=34.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
.+.++.||.|+||||.+..++......|.+|++..|.-
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 47899999999999999999999999999999998753
No 93
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.69 E-value=1.8e-05 Score=87.77 Aligned_cols=49 Identities=31% Similarity=0.329 Sum_probs=40.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
.....+++||.|||||+.+.. .+++.+.++|+++||...+.++.+++.+
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l---~ll~~g~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHH---HHHHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHH---HHHHCCCeEEEEcchHHHHHHHHHHHHH
Confidence 466899999999999976554 3445788999999999999999888754
No 94
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.63 E-value=0.00011 Score=90.35 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-----------cCCeEEEeccchHHHHHHHHHhc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-----------RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-----------~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
..||+-|.+++..++.++..++|.+|-|+|||.++.-.+...+. .+.++++++|+.+-+.+..+.+.
T Consensus 78 ~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 57999999999999987889999999999999876555544442 25789999999998888776654
No 95
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.63 E-value=0.00011 Score=78.21 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCCchHHHH-HHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 212 KNVFMLHGPPGTGKTTTV-VEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti-~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...++|+||.|||||.+. ..++..++..+.++++++||...++++.+.+..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~ 53 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG 53 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC
Confidence 357899999999999985 566667788899999999999999999998863
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.57 E-value=0.00012 Score=67.70 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHc--------cCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEec
Q 006652 198 DHSQKDAISKALS--------SKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACA 247 (637)
Q Consensus 198 n~~Q~~Av~~~l~--------~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a 247 (637)
++.|+.|+..+.. ....++|.|||||||||++..++..+. ..|..++.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6789988887762 246789999999999999998888876 5676666544
No 97
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.53 E-value=0.00014 Score=80.91 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=49.3
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 204 AISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
++..++ ....+++.||.|||||.+ +..++..+...+.++|+++||...+.++.+.+....
T Consensus 179 ~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~~ 239 (618)
T 2whx_A 179 DEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLP 239 (618)
T ss_dssp CGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred CHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCCc
Confidence 343333 467899999999999997 577777777888899999999999999999986443
No 98
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.51 E-value=0.00037 Score=65.51 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
..+.+|.||.|+||||.+..++..+...+.++++..|.-
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 358899999999999999999988888999999998854
No 99
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.49 E-value=0.00054 Score=69.00 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+++|.||+|+||||++..++..+...+.+|++.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 36889999999999999999998888888887764
No 100
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00026 Score=81.53 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=95.2
Q ss_pred CCCCCHHHHHHHHHHH---ccCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEeccchHHHHHHHHHhcCC--Cc
Q 006652 194 NSNLDHSQKDAISKAL---SSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH--RV 265 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rL~~~--~~ 265 (637)
...|-+.|.++|..++ ....-.++.-+.|+|||.+++.++..+.. .+.++||++|+ ..+.+..+.+.+. +.
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL-STMPAWLDTFEKWAPDL 312 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCT-TTHHHHHHHHHHHSTTC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECc-hHHHHHHHHHHHHCCCc
Confidence 4679999999997554 23556789999999999999988887753 35789999994 4566666665543 23
Q ss_pred eEEEeCCCCCcChhHHHhhHHHHHhcCCChhhHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006652 266 RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTD 345 (637)
Q Consensus 266 ~~vrig~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (637)
.++.......... .+.... -.... .....
T Consensus 313 ~v~~~~g~~~~r~-----~~~~~~------------------------~~~~~----------------------~~~~~ 341 (800)
T 3mwy_W 313 NCICYMGNQKSRD-----TIREYE------------------------FYTNP----------------------RAKGK 341 (800)
T ss_dssp CEEECCCSSHHHH-----HHHHHH------------------------SCSCC---------------------------
T ss_pred eEEEEeCCHHHHH-----HHHHHH------------------------hhccc----------------------ccccc
Confidence 3332221110000 000000 00000 00011
Q ss_pred HhhcCceeeeeccccccc--ccCCCCCCEEEEecCCCcc--hHHHHHHHH---hCCeEEEeCCCCC
Q 006652 346 VIKNADVVLTTLTGAVSR--KLDNTSFDLVIIDEAAQAL--EIACWIALL---KGSRCILAGDHLQ 404 (637)
Q Consensus 346 il~~~~vi~~T~~~~~~~--~l~~~~fd~vIIDEA~q~~--e~~~l~~l~---~~~~~vlvGD~~Q 404 (637)
....++|+++|...+... .+....|++||||||..+. .......+. ...++.|-|=|-|
T Consensus 342 ~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 342 KTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred ccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCC
Confidence 234678899888776532 3455689999999998873 222222222 2368899999876
No 101
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.44 E-value=0.00015 Score=81.11 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=40.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceE
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRL 267 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~ 267 (637)
...+++.||+|||||+.+... +... .+.++++||..++.++.+++.+.+..+
T Consensus 155 rk~vlv~apTGSGKT~~al~~---l~~~-~~gl~l~PtR~LA~Qi~~~l~~~g~~v 206 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAIQK---YFSA-KSGVYCGPLKLLAHEIFEKSNAAGVPC 206 (677)
T ss_dssp CEEEEEECCTTSSHHHHHHHH---HHHS-SSEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHH---HHhc-CCeEEEeCHHHHHHHHHHHHHhcCCcE
Confidence 568999999999999944433 3333 455899999999999999998876554
No 102
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.28 E-value=0.00036 Score=65.74 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..++|+||||||||+++..+...+...+.+++++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 678999999999999999888888777777766543
No 103
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.25 E-value=0.00088 Score=69.70 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHc------cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALS------SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+.+.+.+...+. ....++|+||||||||+++..++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566666666552 3457999999999999999888877654
No 104
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.20 E-value=0.0034 Score=63.62 Aligned_cols=35 Identities=43% Similarity=0.601 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.++.|.||+|+||||++..++..+...+.+|++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47889999999999999999999888888888774
No 105
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.16 E-value=0.00074 Score=65.09 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 196 NLDHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.-+....+.+..... .....+|.||||||||+++..++..+...+.++..+..
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 34 AGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp -CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 345666666766654 25689999999999999999998888777777766654
No 106
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.15 E-value=0.00068 Score=71.69 Aligned_cols=35 Identities=43% Similarity=0.458 Sum_probs=31.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+.+|.|+||+||||++..++..+...|.+|++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 68899999999999999999999988988887753
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.12 E-value=0.00049 Score=63.87 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..+.+|.||||+||||.+..++..+...|.+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 35789999999999999999999998899999998876
No 108
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.12 E-value=0.0023 Score=64.20 Aligned_cols=36 Identities=42% Similarity=0.450 Sum_probs=31.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
+..+.|++|+||||++..++..+...|.+|+++..-
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 677889999999999999999998889888877543
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.11 E-value=0.0013 Score=67.36 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
..+++||||||||+++..++..+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhC
Confidence 5899999999999999988888764
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.07 E-value=0.00049 Score=61.51 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 192 PFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+....|.++..++... ....++|.||||||||+++..+...+...|.+++.+.
T Consensus 18 ~f~~g~n~~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 18 KFLGTENAELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCCSCCTHHHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred hcCcCccHHHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 34446787777776655 3668999999999999999988887766665554443
No 111
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0013 Score=66.35 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCCEEEEecCCCcchHH--HHHHHHh----CCeEEEe-CCCCCCCccccCH
Q 006652 369 SFDLVIIDEAAQALEIA--CWIALLK----GSRCILA-GDHLQLPPTVQSV 412 (637)
Q Consensus 369 ~fd~vIIDEA~q~~e~~--~l~~l~~----~~~~vlv-GD~~QL~p~v~s~ 412 (637)
.+.+||||||..++... .|...+. ...+|++ -++..+.|++.|.
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 57999999998876543 2333332 2456655 4677888888776
No 112
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.98 E-value=0.002 Score=64.65 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.+..|.|++|+||||++..++..+...+.+|++...
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 366677999999999999999988888888887653
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00053 Score=69.23 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=24.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
..+..+|.||||||||+++..++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999988865
No 114
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.93 E-value=0.0011 Score=64.39 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=42.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...+++|.||||+|||+.+..++..++..+.++++++.... ...+.+++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHc
Confidence 45689999999999999999999998888989998886554 46666666544
No 115
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.90 E-value=0.0018 Score=59.69 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+.+.+.+...+. .....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445555555554 2357899999999999999888887765
No 116
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.89 E-value=0.0061 Score=68.61 Aligned_cols=64 Identities=13% Similarity=-0.009 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..++-|..++-.++. +- +.+.+.|||||-+.+--+....-.|..++|+|||..-+....+-+..
T Consensus 83 ~pt~VQ~~~ip~ll~--G~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 83 FPFKVQLMGGVALHD--GN-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp CCCHHHHHHHHHHHT--TS-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhC--CC-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 568999999988776 33 89999999999765544432223588999999999888777665543
No 117
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.87 E-value=0.0034 Score=66.30 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=34.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEecc---chHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAA---SNIAVDNI 256 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~---tn~Avd~l 256 (637)
+.++.|++|+||||+++.++..+... |++|++++- ...|.+.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 66778999999999999999999998 999987743 23455543
No 118
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.00059 Score=60.60 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=23.8
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeE
Q 006652 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (637)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (637)
.....++|+||||||||+++..+.......+..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~ 55 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF 55 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE
Confidence 3456889999999999988876654433334333
No 119
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.84 E-value=0.0052 Score=68.99 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
....+-|..++-.++. +- +...+.|||||-+.+--+......|.+++|+|||..-+..+.+.+..
T Consensus 73 ~~p~~VQ~~~i~~ll~--G~-Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNE--RC-IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp CCCCHHHHHHHHHHHS--SE-EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCCChHHHhhcccccC--Ce-eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHH
Confidence 3567899999987776 44 89999999999766544433234688999999999888776665543
No 120
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.82 E-value=0.0015 Score=74.54 Aligned_cols=65 Identities=20% Similarity=0.424 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-Hc--CCeEEEeccchHHHHHHHHHhcC
Q 006652 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-KR--GSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~--~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...|+.++..++.....++|.||.|||||+.+..++.... .. +.+|++++|+..++..+.+++.+
T Consensus 95 ~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 4578888888887677999999999999996655543322 12 67899999999999998887743
No 121
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.82 E-value=0.00079 Score=62.83 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.||||||||+.+..++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887765
No 122
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.82 E-value=0.0014 Score=66.10 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~ 248 (637)
....+|+||||||||+++..++..+. ..|.+++++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46789999999999999999999998 88888876654
No 123
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.77 E-value=0.0012 Score=62.81 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=30.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..++.|+||+||||+++.++..+...|.+|+++.-
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 46889999999999999999999999998875543
No 124
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.77 E-value=0.0013 Score=61.32 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=34.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
.+.++.||+|+||||.+..++..+...|.+|++..|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3789999999999999999999999999999999886
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.76 E-value=0.0018 Score=59.46 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcc--CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 199 HSQKDAISKALSS--KNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 199 ~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+.+.+.+...+.. ....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444555555542 457899999999999999888887765
No 126
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.73 E-value=0.003 Score=64.14 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
...+|+||||||||+++..++..+...+.+++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4789999999999999998888887777777776543
No 127
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.72 E-value=0.0075 Score=67.98 Aligned_cols=64 Identities=14% Similarity=0.005 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
...+-|..++-..+. +- +.+.+-|||||-+.+--+....-.|..++|+|||..-+....+-+..
T Consensus 111 rP~~VQ~~~ip~Ll~--G~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 111 RPFDVQVMGAAALHL--GN-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp CCCHHHHHHHHHHHT--TE-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhc--CC-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHH
Confidence 568899999887775 44 89999999999765544432233588999999999888766665543
No 128
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.58 E-value=0.011 Score=62.12 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=30.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.++.|.||+|+||||++..++..+...+.+|++..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 36778899999999999999999888888888765
No 129
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.57 E-value=0.0011 Score=62.37 Aligned_cols=34 Identities=24% Similarity=0.589 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH-----HcC-CeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV-----KRG-SKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~-----~~~-~~ILv~ 246 (637)
-+.+|.|+||||||+.++..+..+. +.| .++.+|
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~ 45 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFT 45 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEe
Confidence 4789999999999999888776654 455 455445
No 130
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.53 E-value=0.0046 Score=68.67 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=54.5
Q ss_pred CHHHHHHHH---HHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC----CceEEE
Q 006652 198 DHSQKDAIS---KALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPH----RVRLVR 269 (637)
Q Consensus 198 n~~Q~~Av~---~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~----~~~~vr 269 (637)
-+.|++.+. .++......++.+|.|||||.. +.-++..+...+.+|+++|+|+..+..+.+-+... +++++-
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~ 84 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIP 84 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEE
Confidence 467877765 4454577999999999999965 45555555567899999999999888887766543 344444
Q ss_pred eCC
Q 006652 270 LGH 272 (637)
Q Consensus 270 ig~ 272 (637)
+..
T Consensus 85 l~g 87 (620)
T 4a15_A 85 MQG 87 (620)
T ss_dssp CCC
T ss_pred EEC
Confidence 443
No 131
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0046 Score=69.63 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
..++-|..++-..+. .. +.+...|||||.+.+--+....-.|..++|+|||..-+....+-+..
T Consensus 79 ~Pt~VQ~~~ip~Llq-G~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHE-GK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHT-TS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccC-Cc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 568999999987776 33 88999999999876554433334688999999999888776665543
No 132
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.41 E-value=0.004 Score=62.56 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...++++||||||||+++..+...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999888777665
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.39 E-value=0.0068 Score=62.95 Aligned_cols=41 Identities=22% Similarity=0.108 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcc------CCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 199 HSQKDAISKALSS------KNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 199 ~~Q~~Av~~~l~~------~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
+.+.+.+...+.. .+.++|+||||||||+++..++..+...
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4555555544431 4579999999999999998888877554
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.39 E-value=0.0015 Score=57.87 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.8
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHH
Q 006652 210 SSKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
.....++|+||||||||+++..+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 345678999999999998765443
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.34 E-value=0.003 Score=62.77 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...++|+||||||||+++..++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999988777654
No 136
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.34 E-value=0.0029 Score=62.28 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=25.7
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.....++|+||||||||+++..+...+...+..++.+
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 3467899999999999988776665543334444444
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.34 E-value=0.0039 Score=58.89 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 198 DHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
.+...+.+...+... +..+|.||||||||+++..++..+...
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455666676666533 358999999999999988888776543
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.33 E-value=0.0036 Score=59.96 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+...+.+...+... ...+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455556666666533 37899999999999998888776653
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.31 E-value=0.0044 Score=60.58 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+|+||||||||+++..+...+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999888776653
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.30 E-value=0.0044 Score=59.27 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=37.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
..+++|.||||+||||++..++..+...+.+|++.+.... .+.+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~ 70 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQA 70 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHH
Confidence 4689999999999999999999888777888888775443 34444444
No 141
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.0051 Score=59.58 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=40.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH-HHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQE-VKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
...+++|.|+||+|||+.+.+++... ...+.++++++.... .+.+.+++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHc
Confidence 35689999999999999999988765 455788998887554 45666666543
No 142
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.22 E-value=0.035 Score=51.78 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+++..+-.|+||||+++.++..+...|.+|+++-.
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34556778999999999999999999999998854
No 143
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.22 E-value=0.0049 Score=62.40 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=41.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...+++|.|+||+|||+.+..++..++.++.+|++.+.- ...+.+..|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHH
Confidence 456999999999999999999999988888999999875 34556666653
No 144
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.21 E-value=0.0032 Score=64.51 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=38.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
..+++|.||||+||||.+..++..+...+.+|++++.-...-...++++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHc
Confidence 4589999999999999999999998888888888876554433455554
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.16 E-value=0.0049 Score=62.00 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
..++|+||||||||+++..++..+...+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999988888776543
No 146
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.16 E-value=0.0035 Score=62.55 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEeccchHHHHHHHHHh
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rL 260 (637)
.++++|.||||||||+.+..++..+.+. +.+++.+..-+..-...+++|
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh
Confidence 3588999999999999999999998876 788888876554433334443
No 147
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.13 E-value=0.0057 Score=55.51 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=32.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
.+..|.|++||||||++..++..|...|.+|.++....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 57889999999999999999998888888887777544
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.0052 Score=62.90 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHccCCe--EEEEcCCCCchHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALSSKNV--FMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~~~--~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
++...+.+...+....+ .+++|||||||||++..++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34555566666664444 89999999999999988887765
No 149
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.08 E-value=0.0044 Score=63.61 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=35.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI 251 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~ 251 (637)
...+++|.|||||||||.+..++..+...+.++++++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 45689999999999999999999999888888888876543
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.08 E-value=0.011 Score=62.87 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHc--CCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~ 248 (637)
+..+|+||||||||+++..+...+... +.+++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 478999999999999998888777655 666666554
No 151
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.08 E-value=0.0033 Score=62.97 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
..++++||||||||+++..++..+ +..++.+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 367899999999999888877765 44444443
No 152
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0029 Score=66.49 Aligned_cols=33 Identities=36% Similarity=0.469 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.=+|++||||||||.++.+++..+ +..++.+..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 358899999999999887776553 455555544
No 153
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.06 E-value=0.0044 Score=62.34 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
..++++||||||||+++..+...+...+..++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4789999999999999888777765544444443
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.03 E-value=0.006 Score=61.07 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEec
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACA 247 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a 247 (637)
..++.|.||+|+||||++..++..+.. .|++|++++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 458889999999999999999988875 788888765
No 155
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.03 E-value=0.005 Score=63.31 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=35.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccch
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (637)
...+++|.||||+|||+.+..++..+...|.++++++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4568999999999999999999999998888898887644
No 156
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.01 E-value=0.0047 Score=61.78 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...++|+||||||||+++..+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999988777654
No 157
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0033 Score=66.06 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
=+|++||||||||+++.+++..+ +..++.+..
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 47899999999999988877653 445554443
No 158
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.96 E-value=0.0041 Score=63.39 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 200 SQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 200 ~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+++..++...+..++.||||||||+++..+...+
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3444555555556789999999999999887766543
No 159
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0035 Score=64.97 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.=+|++||||||||.++.+++..+ +..++.+..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 347899999999999888776552 444544443
No 160
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=95.93 E-value=0.0045 Score=73.59 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=56.9
Q ss_pred CCCceeccCCCCCCccccEEEEEeeecCCC----Ccccc--------C-------CCCCchhhhhhccccceEEEecCCc
Q 006652 548 LKNMEVSTVDGFQGREKEAIIISMVRSNSK----KEVGF--------L-------SDRRRMNVAVTRARRQCCLVCDTET 608 (637)
Q Consensus 548 ~~~i~V~Tvd~~QG~E~dvVIis~vrs~~~----~~~gf--------l-------~d~~rlnVAlTRAk~~liivg~~~~ 608 (637)
.+.|.|+|+|.++|.|||+|++..+..... ...+| . .+++.+||||||||+.|+|......
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 478999999999999999999987654321 11122 1 1234589999999999999865432
Q ss_pred ------cCCchHHHHHHHHHHH
Q 006652 609 ------VSSDGFLKRLIEYFEE 624 (637)
Q Consensus 609 ------l~~~~~~~~l~~~~~~ 624 (637)
...+.+..++.+++..
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l~~ 757 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYIGQ 757 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHHHT
T ss_pred CCCCCcCCCCHHHHHHHHHHHH
Confidence 3357899999988865
No 161
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0037 Score=65.75 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.=+|++||||||||.++.+++..+ +..++.+..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 457899999999999988777553 445554443
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.87 E-value=0.031 Score=56.40 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=35.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEE-EeccchHHHHHHHHHhcC--CCceEEEeCCCCCc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKIL-ACAASNIAVDNIVERLVP--HRVRLVRLGHPARL 276 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~IL-v~a~tn~Avd~l~~rL~~--~~~~~vrig~~~~~ 276 (637)
..++|+||||||||+++..+...+ +..+. +.++.-....++...+.. ....++-+.....+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l 102 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRL 102 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCccc
Confidence 578999999999999988877654 33333 323322234455555544 12334444443333
No 163
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.86 E-value=0.0062 Score=62.78 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=38.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (637)
...+++|.||||+|||+.+..++..+...+.+|++++.-...-....++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~ 121 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARA 121 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHH
Confidence 4568999999999999999999999988888999888765433333333
No 164
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.85 E-value=0.012 Score=63.32 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=40.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc---chHHHHHHHHHhcCCCceEEE
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA---SNIAVDNIVERLVPHRVRLVR 269 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~---tn~Avd~l~~rL~~~~~~~vr 269 (637)
.++|.|+||+||||++..++..+...|++|++++. ...|++.+...-...++.++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 56788999999999999999999988988888765 445555543322223444443
No 165
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.84 E-value=0.0096 Score=60.53 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=41.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.|+||+|||+.+..++..+...|.+|++.+.-. ...++..|+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHH
Confidence 4569999999999999999999999988999999998744 345666665
No 166
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.84 E-value=0.0086 Score=60.69 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 197 LDHSQKDAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
-++...+.+...+.. ....++.||||||||+++..+...+ +..++.+..+
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 356667777777762 2467888889999999988776554 4445444433
No 167
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.83 E-value=0.0087 Score=60.72 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++++||||||||+++..++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999988777655
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0053 Score=62.96 Aligned_cols=38 Identities=32% Similarity=0.544 Sum_probs=28.5
Q ss_pred HHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 200 SQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 200 ~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
...+.+..++... +..++.||||||||+++..++..+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445666666533 4589999999999999988887764
No 169
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.79 E-value=0.0084 Score=60.22 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...++|+||||||||+++..++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999988877654
No 170
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.75 E-value=0.0088 Score=60.71 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..++++||||||||+++..++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468999999999999988777654
No 171
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.005 Score=64.11 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.=+|++||||||||.++.+++..+ +..++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~ 248 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT---SATFLRIV 248 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCceECCCCchHHHHHHHHHHHh---CCCEEEEE
Confidence 458899999999999887777553 44444443
No 172
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.74 E-value=0.008 Score=62.12 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...++++||||||||+++..+...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999887776554
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.73 E-value=0.0072 Score=61.69 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+++.|||||||||++..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 678999999999998887766554
No 174
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.73 E-value=0.0082 Score=58.64 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.-++|.||||||||+++..+...+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 458999999999999888776543
No 175
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.70 E-value=0.011 Score=62.04 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 196 NLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+...+..++..++. ..++++|.||.|+||||++..++..+-....+|++.
T Consensus 150 g~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 467788888887765 346899999999999999998877654334456554
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.68 E-value=0.012 Score=60.96 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHcc------CCeEEEEcCCCCchHHHHHHHHHHHHHc---CCeEEEe
Q 006652 198 DHSQKDAISKALSS------KNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILAC 246 (637)
Q Consensus 198 n~~Q~~Av~~~l~~------~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~ 246 (637)
-+.+.+.+...+.. ...++|.||||||||+++..++..+... +..++.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34556666655542 4579999999999999998888776554 4454443
No 177
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.66 E-value=0.0092 Score=55.13 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=26.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+.+|.|||||||||.+..+...+-..|..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 578999999999999988888776666666655
No 178
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.66 E-value=0.011 Score=54.88 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=26.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+..|.|||||||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 568999999999999988888777677776543
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.011 Score=59.81 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+...+.+...+... +..+++||||||||+++..++..+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 456666666666532 3689999999999999988887764
No 180
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.63 E-value=0.013 Score=60.88 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHcc------CC--eEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 198 DHSQKDAISKALSS------KN--VFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 198 n~~Q~~Av~~~l~~------~~--~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
.+.+.+.+...+.. .. .++|.||||||||+++..++..+... +..++.+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 34555555555531 13 79999999999999998877766544 4455544
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.62 E-value=0.011 Score=60.97 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
...+|.||||||||+++..++..+-
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3789999999999998888777664
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.015 Score=63.24 Aligned_cols=31 Identities=42% Similarity=0.572 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
...+|.||||||||+++..++..+ +..++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEE
Confidence 589999999999999988777665 5555444
No 183
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0054 Score=64.51 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.=+|++||||||||.++.+++..+ +..++.+..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 358999999999998887776543 444444443
No 184
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.58 E-value=0.027 Score=62.97 Aligned_cols=65 Identities=25% Similarity=0.318 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHc--cCC--eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 196 NLDHSQKDAISKALS--SKN--VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~--~~~--~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
.++..|..|+..... ..+ ..++.|.+|||||.+++.++..+ ++.+||+|++...+..+.+.|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 678889888876543 122 46789999999999999888654 668999999999999999998765
No 185
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.55 E-value=0.013 Score=54.13 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+.+|.|+||+||||++..+...+-..|.++.++.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 47789999999999999998888877777776653
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.53 E-value=0.01 Score=61.18 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.-++++||||||||+++..++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 358899999999999988777664
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.52 E-value=0.012 Score=62.46 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.++++||||||||+++..+...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999998887666543
No 188
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.51 E-value=0.013 Score=62.18 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=39.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.|+||+|||+.+..++..++.+|.+|++.+.-.. .+.+..|+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~ 244 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRL 244 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHH
Confidence 45699999999999999999999999888999999987532 33445554
No 189
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.50 E-value=0.0081 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|||||||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887766553
No 190
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.50 E-value=0.0094 Score=59.71 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
....+|.||||||||+.+.+++.. .|.++++++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 456799999999999999988766 4555554444
No 191
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.49 E-value=0.013 Score=57.53 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+.+|.|+|||||||++..+...+...|..++++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 47889999999999999988888776777766544
No 192
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.49 E-value=0.012 Score=55.70 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=29.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
...+++|.||||+||||.+..++. ..+.++++++..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 346899999999999999998887 567788777643
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.45 E-value=0.036 Score=56.37 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++|+||||||||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999988877554
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.42 E-value=0.017 Score=59.52 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=32.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..+.|.|+||+||||++..++..+...|.+|+++...
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3678999999999999999999998889999888653
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.40 E-value=0.0096 Score=60.46 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=32.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc------CCeEEEeccch
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR------GSKILACAASN 250 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------~~~ILv~a~tn 250 (637)
...+++|.||||||||+.+..++.....+ +.++++++..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45689999999999999999998876554 67888877655
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.39 E-value=0.019 Score=60.93 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..++++||||||||+++..++..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999988777654
No 197
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.38 E-value=0.0082 Score=59.21 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...+|+||||||||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999998877765
No 198
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.38 E-value=0.018 Score=61.39 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=39.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.|+||+|||+.+..++..+.. .|.+|++.+.-... ..+..|+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHH
Confidence 4569999999999999999999998876 57899998865443 4566664
No 199
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.38 E-value=0.0052 Score=60.47 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++|+||||||||+++..++..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999988777653
No 200
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.37 E-value=0.018 Score=56.94 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=33.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc----------CCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR----------GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----------~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.||||+||||.+..++..+... +.++++++.-... +.+..++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~ 87 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRL 87 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHH
Confidence 45799999999999999999888755431 3567666554432 4444443
No 201
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.35 E-value=0.016 Score=57.94 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=36.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.||||+||||.+..++..+... |.+|++.+.... ...+..|+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~ 83 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 83 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHH
Confidence 45699999999999999999988887765 768888765432 23344443
No 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.35 E-value=0.0086 Score=54.71 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.|||||||||++..+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999888776553
No 203
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.30 E-value=0.017 Score=61.61 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.-.++.||||||||+++..++..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 468999999999999988777664
No 204
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.29 E-value=0.019 Score=52.47 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
-+++.|.||+|+||||++..++..+...+.++-++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3578999999999999999999887777777765554
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.29 E-value=0.017 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+.+|.|+|||||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999888887776567665543
No 206
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.29 E-value=0.013 Score=58.98 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+...+.+...+... +..+++||||||||+++..++..+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 445555666555422 35899999999999999888877653
No 207
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.26 E-value=0.024 Score=55.33 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=29.7
Q ss_pred CCCCHHHHHH-HHHHHcc----CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 195 SNLDHSQKDA-ISKALSS----KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 195 ~~Ln~~Q~~A-v~~~l~~----~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+.|+.+... +...+.. ....++.||||||||..+.+++..
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 4678887554 4444442 236899999999999998877754
No 208
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.014 Score=60.09 Aligned_cols=24 Identities=46% Similarity=0.580 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...++|+||||||||+++..++..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998877654
No 209
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.17 E-value=0.017 Score=59.55 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.+...+.+..++... ...+|+||||||||+++..++..+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555566655522 3579999999999999987776653
No 210
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.17 E-value=0.014 Score=56.93 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
..++++.|.||+||||++..++..+. .|.+|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 35788999999999999999999998 999998876
No 211
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.16 E-value=0.014 Score=63.27 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=40.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.|+||+|||+.+..++..++.+ |.+|++++.-.. ..++..|+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 45689999999999999999999998876 889999987554 34666665
No 212
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.15 E-value=0.014 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
....+|.|||||||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4588999999999999988877665
No 213
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.14 E-value=0.011 Score=59.57 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
....++|+||||||||+++..+...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4568999999999999887666544
No 214
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.02 Score=57.71 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+...+.+...+... +..+++||||||||+++..++..+..
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 344555666666532 34899999999999999888877653
No 215
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.11 E-value=0.014 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
....+|.|||||||||++..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999888777654
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.11 E-value=0.014 Score=62.82 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 203 DAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
+++..++...+..++.||||||||+++..+...
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 344444445789999999999999887766654
No 217
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.09 E-value=0.013 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
.+.+|.|||||||||++..+...+-..|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999888877665555
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.07 E-value=0.021 Score=55.18 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=29.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEeccc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAAS 249 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~t 249 (637)
...++.|.||+|+||||++..++...+ ..+..+++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 457999999999999999988886554 666666655543
No 219
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.05 E-value=0.012 Score=53.68 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
+.+|.|||||||||.+..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 678999999999998877665
No 220
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.05 E-value=0.019 Score=59.86 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..+||+||||||||+++..++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999988776543
No 221
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.05 E-value=0.01 Score=58.68 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=17.8
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
+++.||||||||+++..++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999988766543
No 222
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.03 E-value=0.027 Score=59.89 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=39.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEEeccchHHHHHHHHHhc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...+++|.|+||+|||+.+..++..... .|.+|++.+.-.. ...+..|+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHH
Confidence 4569999999999999999999998886 4889999887544 345666653
No 223
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.99 E-value=0.012 Score=53.23 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCchHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEI 232 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~ 232 (637)
.+.+|.|||||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46789999999999987766
No 224
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.97 E-value=0.015 Score=59.61 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH------cCCeEEEeccchH-HHHHHHHHh
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAASNI-AVDNIVERL 260 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~tn~-Avd~l~~rL 260 (637)
..+++|.||||||||+.+..++..... .+.++++++..+. ..+.+.+++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~ 177 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 177 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 458999999999999999998877544 3678888776553 234444443
No 225
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.96 E-value=0.014 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.|+|||||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999988777655
No 226
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.95 E-value=0.023 Score=59.43 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCeEEE--EcCCCCchHHHHHHHHHHHHH
Q 006652 212 KNVFML--HGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 212 ~~~~lI--~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+..+| .||||||||+++..++..+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 457888 999999999999888877654
No 227
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.90 E-value=0.017 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.+|.|||||||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999888776554
No 228
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.89 E-value=0.023 Score=57.54 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec-cc--hHHHHHHHHHhcCCCceE
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-AS--NIAVDNIVERLVPHRVRL 267 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~t--n~Avd~l~~rL~~~~~~~ 267 (637)
..++.|.||+|+||||++..++..+...+.+|++.+ .+ ..|.+.+...-...++.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~ 187 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceE
Confidence 347889999999999999999888877777777664 32 234454443322334433
No 229
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.85 E-value=0.029 Score=52.57 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (637)
.+.+|.|||||||||++..+...+-..| .+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 3678999999999999988887765445 44
No 230
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.83 E-value=0.011 Score=56.01 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.+|.||||+||||.+..++..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999877666553
No 231
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.82 E-value=0.03 Score=52.66 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
..+.+|.|+|||||||++..+...+-..+-.+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 35788999999999999998888776666665433
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.82 E-value=0.013 Score=57.10 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.0
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
++|.|||||||||++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999988776654
No 233
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.74 E-value=0.029 Score=59.99 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+...+.+..++. ..+..++.||||||||+++-.++..+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 444555555553 3457899999999999988877766643
No 234
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.72 E-value=0.027 Score=56.37 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.++.|.||.|+||||++..++..+...+.+|++.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47889999999999999998888776777887765
No 235
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.70 E-value=0.015 Score=59.49 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.++|+||||||||+++..+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4579999999999999887766543
No 236
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.68 E-value=0.015 Score=60.22 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...++++||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887776654
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.67 E-value=0.03 Score=56.16 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..++.|.||.|+||||++..++..+...+.+|++.+-
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 3588899999999999999888877766777877653
No 238
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.66 E-value=0.02 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|||||||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887776553
No 239
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.66 E-value=0.02 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+|.|+|||||||+...+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999887776554
No 240
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.66 E-value=0.059 Score=53.01 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=29.8
Q ss_pred CeEEEEcC-CCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGP-PGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~Gp-PGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+..|.++ ||.||||+.+.++..+.+.|++||++-
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35666655 999999999999999999999999873
No 241
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.65 E-value=0.02 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..+|.||||+||+|.+..++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999887766654
No 242
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.65 E-value=0.028 Score=57.61 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=37.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
.+.++.|-+|+||||+.++++..+...|++||++.--- + .++...+
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~-~~l~~~l 72 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-A-HSLRDIF 72 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-T-CHHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-C-CCHHHHh
Confidence 47888999999999999999999999999999987543 2 2444444
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.63 E-value=0.023 Score=54.65 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=29.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH------cCCeEEEeccch
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAASN 250 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~tn 250 (637)
...+++|.||||+||||++..++...+. .+.+++.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3568999999999999999988876433 245666665433
No 244
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.63 E-value=0.022 Score=55.52 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~ 264 (637)
...++|.|+||||||+...+.+...+++|.+++++++.. ....+..+....|
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHcC
Confidence 347899999999999888999999999999999999954 4455666655544
No 245
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.62 E-value=0.02 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.|+|||||||++..+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887766543
No 246
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.61 E-value=0.025 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.+|.|||||||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999888776654
No 247
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.60 E-value=0.022 Score=58.37 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHH-cc--CCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 198 DHSQKDAISKAL-SS--KNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 198 n~~Q~~Av~~~l-~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
++...+++..++ .. .+..+|.|||||||||++..++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 456666666666 32 1348999999999999998888766543
No 248
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.60 E-value=0.018 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.++.|.|||||||||++..+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999987666544
No 249
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.60 E-value=0.02 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.|||||||||++..+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999887776553
No 250
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.59 E-value=0.021 Score=53.38 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|||||||||++..+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999887776654
No 251
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.57 E-value=0.047 Score=67.37 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=37.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI 251 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~ 251 (637)
....++|.||||||||+.+.+++...+.+|.++++.++.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 45689999999999999999999999999999999998764
No 252
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.56 E-value=0.02 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999988877654
No 253
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.55 E-value=0.031 Score=56.67 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
.+++..|-+|+||||++++++..+.+.|++||++..-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4788999999999999999999999999999998754
No 254
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.54 E-value=0.034 Score=52.19 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeE
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (637)
..+.+|.|+|||||||++..+...+-..+-.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34788999999999999988887776555555
No 255
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.52 E-value=0.024 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+|.|+|||||||+...+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999887666543
No 256
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.51 E-value=0.033 Score=52.69 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.-+.+|.||||+||||.+..+...+-..|..|.++
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 34778999999999999999888887778777554
No 257
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.49 E-value=0.022 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=18.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+|.|||||||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999887776554
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.42 E-value=0.022 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+++|.||||+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999887776654
No 259
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.42 E-value=0.023 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.+|.|||||||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999887776654
No 260
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.41 E-value=0.024 Score=52.29 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.|||||||||++..+...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887766543
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.37 E-value=0.034 Score=56.99 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=28.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
..++++|.||.|+||||++..++..+-.. +.+|+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 45799999999999999999888776554 5566543
No 262
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.37 E-value=0.05 Score=50.70 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCe
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK 242 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ 242 (637)
...++..++.+... ....++.|.||+|+||||++..+...+-..|..
T Consensus 9 ~~~~~~~~~~~~~~--~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 9 ECSVEKVDRQRLLD--QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp -CCCCHHHHHHHHT--SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccccCHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 34566666654421 224577899999999999988887777655543
No 263
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.37 E-value=0.024 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|+|||||||++..+...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887776554
No 264
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.37 E-value=0.019 Score=56.83 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.0
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
++|.|||||||||++..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 799999999999988776654
No 265
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=94.36 E-value=0.033 Score=66.76 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCCceeccCCCCCCccccEEEEEeeecCC----CCccccCC------------------------CCCchhhhhhccccc
Q 006652 548 LKNMEVSTVDGFQGREKEAIIISMVRSNS----KKEVGFLS------------------------DRRRMNVAVTRARRQ 599 (637)
Q Consensus 548 ~~~i~V~Tvd~~QG~E~dvVIis~vrs~~----~~~~gfl~------------------------d~~rlnVAlTRAk~~ 599 (637)
.+.|.|+|+|..+|.|+++|++..+.... ...-+|+. +++.+|||+|||++.
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~ 664 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDR 664 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSE
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCe
Confidence 46899999999999999999998875432 11122321 224489999999999
Q ss_pred eEEEecC-----CccCCchHHHHHHHHH
Q 006652 600 CCLVCDT-----ETVSSDGFLKRLIEYF 622 (637)
Q Consensus 600 liivg~~-----~~l~~~~~~~~l~~~~ 622 (637)
|++.... ..+..++++..+..++
T Consensus 665 L~lsy~~~~~~~~~~~pS~~l~el~~~~ 692 (1166)
T 3u4q_B 665 LYVSYPIADAEGKTLLPSMIVKRLEELF 692 (1166)
T ss_dssp EEEEEESSCSSSCCCCBCHHHHHHHHHS
T ss_pred EEEEEeccCCCCCccCCCHHHHHHHHHc
Confidence 9988532 3345678888887765
No 266
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.35 E-value=0.026 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.|||||||||.+..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999887776654
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.35 E-value=0.019 Score=57.11 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
+++|.|||||||||++..+...
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999998877654
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.33 E-value=0.021 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
..++.|.||||+||||++..+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 34788999999999998876654
No 269
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.30 E-value=0.038 Score=56.20 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+.+.+...+...+.++|.||+|+|||+.+.+++..+
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 45556666666545799999999999999998877653
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.30 E-value=0.03 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..++.|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4588999999999999888776655
No 271
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.26 E-value=0.04 Score=56.42 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.++.|.||.|+||||++..++..+...+.+|++.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 37889999999999999998888776677787765
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.26 E-value=0.027 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|+|||||||.+..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999888777654
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.24 E-value=0.014 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=25.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+++|.|||||||||.+..++..+-..|..|.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999888887776556566544
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.24 E-value=0.027 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+|.|||||||||.+..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999887776654
No 275
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.23 E-value=0.012 Score=53.92 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=29.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
+++|.||||||||+.+..++.. +.+++.++.....-+++.+|+..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 3689999999999888776643 567777776554456666666543
No 276
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.22 E-value=0.022 Score=53.85 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=17.5
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+|.|||||||||++..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999988776654
No 277
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.22 E-value=0.079 Score=52.95 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=30.3
Q ss_pred CeEEEEcC-CCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGP-PGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~Gp-PGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
.+..|.|+ ||.||||+.+.++..+...|++||++-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 46667765 899999999999999999999999874
No 278
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.17 E-value=0.042 Score=56.01 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+.+.+.. +.. ++++|.||+|+|||+.+.+++..+
T Consensus 19 ~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 455666777 764 799999999999999998887664
No 279
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.17 E-value=0.049 Score=49.67 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+..|.|+|||||||++..+...+...|..++.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 4678999999999998887777665556554433
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.14 E-value=0.032 Score=60.16 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
+++.+.+.+..++.....++|.||+||||||++..++. ++.+..+++.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~-~i~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMM-FIPPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG-GSCTTCCEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh-hCCCCCCEEE
Confidence 67777777877777566799999999999999987654 3444445443
No 281
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.14 E-value=0.048 Score=50.97 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.++.|.||+|+||||++..+...+-..+..|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3678999999999999887777665556666555
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.14 E-value=0.032 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
....+|.|||||||||++..+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347889999999999988766654
No 283
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.14 E-value=0.043 Score=57.74 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+..++.||||||||+++..++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 568999999999999887776554
No 284
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.13 E-value=0.074 Score=50.02 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCeEEEec
Q 006652 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACA 247 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a 247 (637)
.....++.... .....+.+|.|+||+||||++..+...+- ..|..+.++.
T Consensus 11 ~~~~~~r~~~~--~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 11 ALTRSERTELR--NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCCHHHHHHHH--TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCHHHhhccc--CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44566666533 22234778999999999998888777765 5565555553
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.13 E-value=0.031 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++.|.||||+||||++..+...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 478899999999999887766543
No 286
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.11 E-value=0.04 Score=57.41 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=44.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCceEEEeCC
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~~~~~vrig~ 272 (637)
.++.++|.||+|+|||+++..++.++...+.+|+++-|.+.... +++. .+..+++++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~---~gg~~~~~~~ 91 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKE-MCRK---LGGVWINCTG 91 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHH-HHHH---TTCEEEETTS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHH-HHHH---cCCEEEEECC
Confidence 36789999999999999999999998888999999988765443 3333 2456666653
No 287
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.08 E-value=0.036 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.|||||||||++..+...+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999887766543
No 288
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.05 E-value=0.019 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=15.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+.+|.|+|||||||++..+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999988776544
No 289
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.04 E-value=0.037 Score=52.98 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+.+|.||||+||||.+..+...+-. +..++.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 47789999999999998887777655 6566544
No 290
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.03 E-value=0.031 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|||||||||.+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999888777654
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.01 E-value=0.031 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.|||||||||.+..+...+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776554
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.00 E-value=0.034 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.052 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.|+|||||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999887766544
No 293
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.91 E-value=0.025 Score=57.30 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=34.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH------------HcC----CeEEEeccchHH-HHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEV------------KRG----SKILACAASNIA-VDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~------------~~~----~~ILv~a~tn~A-vd~l~~rL 260 (637)
...+++|.||||||||+.+..++.... ..| .++++++..+.. .+.+.+++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 345899999999999999999887642 223 688887765531 34444443
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.90 E-value=0.029 Score=52.58 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+.+|.||||+||||++..++..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999887766554
No 295
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.90 E-value=0.051 Score=57.78 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.++.|.||.|+||||++..++..+...+.+|++.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 3788999999999999999888777777888886
No 296
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.90 E-value=0.034 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+|.|+|||||||.+..+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999888777664
No 297
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.90 E-value=0.052 Score=57.44 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=38.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVD 254 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd 254 (637)
...++|.||+|||||+++..++.+++..|..++|+=|......
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4689999999999999999999999999999999999886654
No 298
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.89 E-value=0.027 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+.+|.|||||||||.+..+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999988766654
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.85 E-value=0.029 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
+.+|.|||||||||++..+...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999988776654
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.84 E-value=0.037 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..+++|.||+|+||||++..++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457889999999999988776644
No 301
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.82 E-value=0.055 Score=55.39 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..+.|.|+||+||||++-.++..+...+.+|.|++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 467899999999999999999888888888888875
No 302
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.82 E-value=0.035 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.|||||||||.+..+...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999887777655
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.81 E-value=0.05 Score=56.21 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=29.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEec
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACA 247 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a 247 (637)
..++++|.||+|+||||++..++..+-.. ..+|++.-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 45689999999999999999888776554 56776543
No 304
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.79 E-value=0.039 Score=50.56 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.|.||+|+||||++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999887766554
No 305
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.79 E-value=0.048 Score=55.37 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..+.++.|-+|+||||+.+.++..+...|++||++.--
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 35889999999999999999999999999999888654
No 306
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.77 E-value=0.046 Score=52.16 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc----CCeEEEe
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILAC 246 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~ 246 (637)
.-+.+|.||||+||||.+..+...+-.. |..|.++
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 3478899999999999999888888766 7777554
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.76 E-value=0.033 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.774 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
+++|.||||+||||++..+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 678999999999999887754
No 308
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.76 E-value=0.035 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+|.|||||||||.+..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999887777654
No 309
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.74 E-value=0.059 Score=52.70 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=28.6
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEec
Q 006652 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACA 247 (637)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a 247 (637)
...++++|.||.|+||||++..++..+-.. ..+|++.-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 345689999999999999998877765443 45666543
No 310
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.66 E-value=0.043 Score=58.87 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++|+||||||||+++..+...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999988776544
No 311
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.65 E-value=0.06 Score=59.40 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
..++++.|.+|+||||+.+.++..+.+.|++||++...
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 45889999999999999999999999999999997654
No 312
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.65 E-value=0.06 Score=54.61 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..+.++.|-+|.||||+.+.++..+.+.|++||++.-
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4688899999999999999999999999999998754
No 313
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.65 E-value=0.035 Score=59.21 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.-++|.||||||||+++..+...+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999888776543
No 314
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.65 E-value=0.061 Score=54.75 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..++.|.||||+||||++..++..+...+.+|.+.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 3578899999999999999888777777788888764
No 315
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.63 E-value=0.066 Score=51.40 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCe
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSK 242 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ 242 (637)
..+.+|.||||+||||.+..+...+-..+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4578899999999999999999888877776
No 316
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.61 E-value=0.068 Score=50.61 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=30.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+++..+-+|+||||+.+.++..+.+.|++|+++=|
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 45556679999999999999999999999998643
No 317
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.59 E-value=0.067 Score=50.46 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 200 SQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 200 ~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+.+.+...+. ....++|.|+||+||||++..++..+... .++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 34444444332 24578899999999999998888776443 455544
No 318
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.56 E-value=0.046 Score=52.84 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..++.|.||||+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999887776554
No 319
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.48 E-value=0.17 Score=52.15 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEeccchHHHHHHHHHhc
Q 006652 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
..|++.|+..+..... ....+|..|-+.|||++++..+...+ ..+.+|+++|+|...+.++.+++.
T Consensus 162 ~~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~ 229 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTK 229 (385)
T ss_dssp CCCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4789999998876433 57899999999999999888877643 346799999999998887776653
No 320
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.47 E-value=0.065 Score=61.06 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 198 n~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+...+.+..++. .....++.||||||||+++-.++..+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3555555666663 34578999999999999887777665
No 321
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.47 E-value=0.031 Score=52.12 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+.+|.|||||||||++..+...+ .|..++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEE
Confidence 478899999999999988777655 33444443
No 322
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.46 E-value=0.15 Score=56.87 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHc--cCC--eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Q 006652 196 NLDHSQKDAISKALS--SKN--VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (637)
Q Consensus 196 ~Ln~~Q~~Av~~~l~--~~~--~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~~ 263 (637)
..+..|..|+..... ..+ ..++.|.+|||||.+++.++..+ ++++||+|++...+..+.+.|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHH
Confidence 567788888775443 122 56789999999999999887654 568999999999999999988765
No 323
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.46 E-value=0.075 Score=50.18 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCC-eEEEe-ccchHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILAC-AASNIAV 253 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~-a~tn~Av 253 (637)
.+.++.|++|+||||.+..+...|-..|. .+.++ -|+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~ 46 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL 46 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHH
Confidence 47789999999999999999888887775 55443 3444333
No 324
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.39 E-value=0.054 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++.|.||+|+||||++..+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458899999999999988776654
No 325
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.32 E-value=0.097 Score=60.46 Aligned_cols=48 Identities=31% Similarity=0.453 Sum_probs=32.9
Q ss_pred HHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH-------cCCeEEEec
Q 006652 200 SQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK-------RGSKILACA 247 (637)
Q Consensus 200 ~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~-------~~~~ILv~a 247 (637)
...+.+..++. .....++.||||||||+++-.++..+.. .+.+++.+.
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 44444444554 2346799999999999988888877755 356666554
No 326
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.32 E-value=0.08 Score=60.33 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+++.||||||||+++..+...+...+..++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 589999999999999988887776555555444
No 327
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.31 E-value=0.07 Score=54.47 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEeccc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAAS 249 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~t 249 (637)
..+.++.|-+|+||||+.+.++..+. ..|++||++..-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 35899999999999999999999999 889999888654
No 328
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.26 E-value=0.074 Score=54.23 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..+.|.|+||+||||++..++..+...+.+|.+++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 467899999999999999998888778888877754
No 329
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.23 E-value=0.057 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++.|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458889999999999988766544
No 330
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.23 E-value=0.24 Score=54.54 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH--cCCeEEEeccchHHHHHHHHHhc
Q 006652 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAASNIAVDNIVERLV 261 (637)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~tn~Avd~l~~rL~ 261 (637)
...|++.|+..+..... ....+|.+|.|+|||++++..+...+- ++.+|+++++|...+..+.+.+.
T Consensus 161 ~~~l~p~Q~~i~~~l~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~ 229 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTK 229 (592)
T ss_dssp BCCCCHHHHHHHHHHHH-CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhcc-ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH
Confidence 35789999998876533 568999999999999998877665543 35699999999999888877654
No 331
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.22 E-value=0.14 Score=50.83 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=28.3
Q ss_pred eEEEE--cCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLH--GPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~--GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+++.. +-.|+||||+.+.++..+...|++||++
T Consensus 37 i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 37 IVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp EEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 44444 5899999999999999999999999985
No 332
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.19 E-value=0.084 Score=51.41 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+++..+-+|+||||+++.++..+.+.|.+||++-
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5677889999999999999999999999999875
No 333
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.18 E-value=0.076 Score=51.83 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
-+++..+-.|+||||+++.++..|.+.|++||++=
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35667888899999999999999999999999864
No 334
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.18 E-value=0.056 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++.|.||||+||||++..+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999887766544
No 335
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.15 E-value=0.056 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+.+|.||+|+||||++..++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999987766544
No 336
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.12 E-value=0.077 Score=58.68 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..-.+.+..++.....++|.|||||||||++..+...+
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34445666666667799999999999998887666543
No 337
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.11 E-value=0.046 Score=52.70 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=29.0
Q ss_pred EEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 217 LHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 217 I~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
|.|-+|+||||+++.++..+.+.|++||++-.
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 48999999999999999999999999998743
No 338
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.05 E-value=0.082 Score=51.31 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+++..+-.|+||||+++.++..|.+.|++||++=
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5566788999999999999999999999999863
No 339
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.05 E-value=0.086 Score=52.27 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=28.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
..|.|-+|+||||+.+.++..|.+.|++||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34579999999999999999999999999986
No 340
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.01 E-value=0.057 Score=58.87 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+++.||||||||+++..+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999998887666554
No 341
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.99 E-value=0.081 Score=51.72 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=28.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
..|.|-.|+||||+.+.++..|.+.|++||++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 34478999999999999999999999999985
No 342
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.98 E-value=0.087 Score=50.34 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=30.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+++..+-+|+||||+.+.++..+.+.|.+||++-.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 45667789999999999999999999999998754
No 343
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.95 E-value=0.084 Score=54.11 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEeccch
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAASN 250 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~tn 250 (637)
..+.+..|-+|.||||+.++++..+. +.|++||++..--
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 45788999999999999999999999 8899999886543
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.91 E-value=0.062 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
....|.|||||||||++..+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999887666543
No 345
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.85 E-value=0.034 Score=63.01 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-+|++||||||||+++.+++..
T Consensus 240 GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999888766644
No 346
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.84 E-value=0.089 Score=57.13 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=36.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.||||+||||.+..++..+...|.+++.+++-+.. ..+..++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~-~~l~~~~ 328 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR-AQLLRNA 328 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH-HHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHH
Confidence 456899999999999999998888777678888777765542 2444443
No 347
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.82 E-value=0.11 Score=48.60 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (637)
.++.|.||+|+||||++..+...+-..|
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4778999999999998876665554334
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.79 E-value=0.057 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
+..|.|||||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999998876653
No 349
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.78 E-value=0.048 Score=58.48 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-++|.||||||||+++..+...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999888776654
No 350
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.75 E-value=0.096 Score=52.43 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=30.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+..|.|-.|+||||+++.++..|.+.|++||++-
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4455599999999999999999999999999874
No 351
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.73 E-value=0.12 Score=48.08 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=29.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+..|-|+.|+||||.+..+...|-+.|.+++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4578999999999999999988888898887764
No 352
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.72 E-value=0.08 Score=64.55 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=41.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.||||+|||+.+.+++......|.++++++.-...-...++++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~l 431 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL 431 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHc
Confidence 45689999999999999999999999999999999988765544444443
No 353
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.67 E-value=0.12 Score=48.59 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-+..|+.++..+- ...++.|.||.|+||||.+..+...
T Consensus 8 k~~g~~~~l~~i~-~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAID-TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHHH-HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCHhHHHHHHhcc-CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567778887764 3679999999999999987766554
No 354
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.66 E-value=0.11 Score=59.06 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 198 DHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 198 n~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.+.+.+.+...+. .....++.||||||||+++..++..+..
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3455555666655 3457899999999999998888877644
No 355
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.65 E-value=0.05 Score=49.40 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCchHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVE 231 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~ 231 (637)
..++.|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45889999999999999876
No 356
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.55 E-value=0.061 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++.|.||.|+||||++..+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999887666543
No 357
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.54 E-value=0.087 Score=64.23 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=41.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
...+++|.||||||||+.+.+++...+..|.++++++.....-+...+++
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~l 82 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL 82 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhh
Confidence 34689999999999999999999999999999999988776544444443
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.52 E-value=0.08 Score=50.22 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
...++.|.||+|+||||++..++..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999988876544
No 359
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.48 E-value=0.11 Score=48.81 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=28.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+++..+-.|+||||+.+.++..+.+.| +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 456788899999999999999999999 99885
No 360
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.48 E-value=0.18 Score=49.95 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+.+..+-||.||||+.+.++..+.+.|++||++-
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444556999999999999999999999999884
No 361
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.42 E-value=0.12 Score=49.05 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH-cCCeEEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILA 245 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv 245 (637)
-+.+|.|++|+||||.+..+...+-. .|..+.+
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 36778999999999999999988887 7877776
No 362
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.35 E-value=0.079 Score=49.00 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=25.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
..+.|.||+|+||||++..++..+-..| |.+..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G--i~~~g 34 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG--VPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT--CCCEE
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC--EEEcC
Confidence 3678999999999999988877766444 55443
No 363
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.33 E-value=0.13 Score=48.53 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcc--CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 199 HSQKDAISKALSS--KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 199 ~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
+.|.+.+...+.. ....+|.|.||+||||++..++..+... .++.+
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~ 70 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIAC 70 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEE
Confidence 4445445444432 3456788999999999999888776544 44433
No 364
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.22 E-value=0.095 Score=48.82 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
++..|.|||||||||++..+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 377899999999999887766544
No 365
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.22 E-value=0.096 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
....++|.|||||||||.+..++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999988877754
No 366
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.21 E-value=0.11 Score=49.92 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=30.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~ 248 (637)
+++..+-.|+||||+++.++..+... |++||++-.
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 45667779999999999999999998 999998854
No 367
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.18 E-value=0.076 Score=54.72 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=31.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
+.++.|..|+||||+.+.++..+...|++||++..
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 67889999999999999999999999999988765
No 368
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.15 E-value=0.095 Score=54.55 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=28.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH------cCCeEEEeccc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAAS 249 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~t 249 (637)
...++.|.||||+||||.+..++..... .+.+++++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4568999999999999999887655543 24566666543
No 369
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.13 E-value=0.091 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.-+..|.||||+||||++..+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999998887766554
No 370
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.96 E-value=0.085 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.234 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
...|.|||||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 467999999999998776665
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.94 E-value=0.081 Score=51.31 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+..|.|||||||||+...+...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999887666544
No 372
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.86 E-value=0.1 Score=60.21 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (637)
+.++|.||||||||+++..+...+...+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~ 619 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 619 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcE
Confidence 3689999999999998887777665444333
No 373
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.77 E-value=0.081 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.||+||||||+...++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378899999999999888777653
No 374
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.76 E-value=0.089 Score=52.42 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
+.+|.|||||||||.+..+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999998877665
No 375
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.74 E-value=0.11 Score=48.43 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+.|.||+|+||||++..+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578899999999999887766543
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.72 E-value=0.11 Score=48.09 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
+..|.|+|||||||+...+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999988766654
No 377
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.70 E-value=0.11 Score=53.21 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...++.|.|||||||||.+..++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999988887665
No 378
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.70 E-value=0.13 Score=63.54 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=38.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDN 255 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~ 255 (637)
....++|.||||||||+.+.+++...++.|.++++++..+..-+-
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L 1124 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 1124 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHH
Confidence 456899999999999999999999999999999999987643333
No 379
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.68 E-value=0.12 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..+++|.||+|+||||++..++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468899999999999988776644
No 380
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.62 E-value=0.096 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...+|.||+|+|||+++.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999998877644
No 381
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.55 E-value=0.14 Score=52.94 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=31.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
+++..|-+|+||||+++.++..|...|++||++-.-
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 566677999999999999999999999999988643
No 382
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.47 E-value=0.11 Score=50.60 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+++..+-+|+||||+.+.++..+.+.|.+||++-
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3444578899999999999999999999999874
No 383
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.44 E-value=0.17 Score=57.55 Aligned_cols=30 Identities=33% Similarity=0.617 Sum_probs=23.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+++.||||||||+++..+...+ +..++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEE
Confidence 68999999999999888777665 4444433
No 384
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.44 E-value=0.1 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
.++.|.||||+||||++..+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999988765543
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.38 E-value=0.13 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++.+|.||.|+|||+++-++...+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999987766544
No 386
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.37 E-value=0.11 Score=50.68 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=28.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+++..+-.|+||||+++.++..|. .|.+||++-
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 455678899999999999999999 999998873
No 387
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.36 E-value=0.064 Score=60.74 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-+|++||||||||.++.+++..
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHT
T ss_pred eEEEecCCCCCchHHHHHHHHH
Confidence 3789999999999777666644
No 388
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=91.27 E-value=0.094 Score=53.92 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=30.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+++..+-+|+||||+++.++..|...|++||++=
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID 37 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVD 37 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4566788999999999999999999999999883
No 389
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.14 E-value=0.16 Score=50.34 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+++..+-.|+||||+.+.++..|.+.|.+||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 455667889999999999999999999999885
No 390
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.10 E-value=0.18 Score=50.31 Aligned_cols=34 Identities=35% Similarity=0.557 Sum_probs=25.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
....+.|.||+|+||||.+..+...+ ..+|++..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v 158 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA 158 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence 45688999999999998887766655 44665433
No 391
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.97 E-value=0.12 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
.+..|.|+|||||||++..+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999988766654
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.96 E-value=0.24 Score=49.55 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH--HcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~ 246 (637)
.++.|.||+|+||||++..+...+- ..+..|.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 3778999999999998876554443 233456663
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.94 E-value=0.15 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
...+.|.||||+||||++..+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999887766544
No 394
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.94 E-value=0.22 Score=49.99 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=32.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
.+.-|.|==|.|||||.+.++..|.+.|+|||++=.
T Consensus 49 KVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~ 84 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 84 (314)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 477788999999999999999999999999998853
No 395
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.93 E-value=0.13 Score=48.65 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=21.2
Q ss_pred HccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 209 LSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 209 l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+....++.|.||.|+||||++..++..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3345688999999999999887766543
No 396
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.91 E-value=0.14 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.++.|.||+||||||++..+...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999887655543
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.58 E-value=0.14 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
+..|.|+|||||||++..+..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999998766543
No 398
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.56 E-value=0.2 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+|.||||+||||++..++..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999987776655
No 399
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.55 E-value=0.11 Score=57.11 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
.+++.||||||||+++..+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSS
T ss_pred ceEEECCCchHHHHHHHHHH
Confidence 69999999999998775544
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.53 E-value=0.25 Score=49.60 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH---cCCeEEEecc
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAA 248 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~ 248 (637)
++-|.||+|+||||++..+ ..++. .+.+|.+++.
T Consensus 94 iigI~GpsGSGKSTl~~~L-~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVL-KALLSRWPDHPNVEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHHHHH-HHHHTTSTTCCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHH-HHHhcccCCCCeEEEEee
Confidence 6789999999999987654 44443 2345555543
No 401
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.47 E-value=0.071 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=15.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
...++.|.||+|+||||++..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34588899999999999887666
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.45 E-value=0.12 Score=52.11 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=26.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
++++|.|+-|+||||++..+.... .+.+|.|+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEec
Confidence 578999999999999987766542 56677776653
No 403
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.44 E-value=0.11 Score=52.59 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=28.9
Q ss_pred HHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 202 KDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 202 ~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
.+-+...+.....++|.||.|+||||++..++..+-.....|.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 34455555556799999999999999877665443222334444
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.41 E-value=0.14 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.||+||||||++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378899999999999988887664
No 405
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.37 E-value=0.22 Score=44.91 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
-++|.|++|+||||++.+++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988775
No 406
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.35 E-value=0.15 Score=52.33 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=24.8
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 204 AISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-+...+.....++|.||.|+||||++..++..
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34555556679999999999999988876654
No 407
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.31 E-value=0.14 Score=48.64 Aligned_cols=22 Identities=36% Similarity=0.458 Sum_probs=17.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.-|.|||||||||.+..++..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 4589999999999887766554
No 408
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.18 E-value=0.63 Score=47.69 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcCC--e--EEEeccchHHHHHHHHHh
Q 006652 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGS--K--ILACAASNIAVDNIVERL 260 (637)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~--~--ILv~a~tn~Avd~l~~rL 260 (637)
+.-.+||...+. ...-..|.||||+|||+.+..++..+.+.+. . ++.+.-...-|.++.+.+
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh
Confidence 444567766554 3457899999999999999887777655432 2 234455555666665554
No 409
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.10 E-value=0.17 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++.|.||+||||||++..+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 357889999999999988776644
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.07 E-value=0.15 Score=50.36 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
+..|.|||||||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999887766
No 411
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.05 E-value=0.18 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++-|.||.|+||||++..+...+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999887665544
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.05 E-value=0.18 Score=45.91 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.++.+|.||.|+||||++-++...
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999887665543
No 413
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.01 E-value=0.13 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+.+|.||+|+|||+++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578899999999999998887654
No 414
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.00 E-value=0.33 Score=52.54 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=27.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHH-HHHHHHcCCeEEEeccc
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEI-ILQEVKRGSKILACAAS 249 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~-i~~l~~~~~~ILv~a~t 249 (637)
...+++|.||||+||||.+..+ +.-+...+...+.++..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4568999999999999999886 45566645444444443
No 415
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.00 E-value=0.12 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
..+++|.|+|||||||.+..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999998876654
No 416
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.99 E-value=0.2 Score=52.19 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHc------c----CCeEEEEcCCCCchHHHHHHHHHHHH------HcCCeEEEecc
Q 006652 197 LDHSQKDAISKALS------S----KNVFMLHGPPGTGKTTTVVEIILQEV------KRGSKILACAA 248 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~------~----~~~~lI~GpPGTGKT~ti~~~i~~l~------~~~~~ILv~a~ 248 (637)
++.+|...+...+. . .-+++..|-.|+||||+.+.++..|. ..|++||++=.
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~ 151 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDL 151 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 46777777766542 0 12566778999999999999999988 46899988744
No 417
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.89 E-value=0.19 Score=47.38 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
..+.++.||+|+||||.+..+...+-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34788999999999999888777664
No 418
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.84 E-value=0.23 Score=63.40 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=25.5
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 203 DAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..+..++.....+++.||||||||.++...+..
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 345556666678999999999999988766654
No 419
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.83 E-value=0.28 Score=53.85 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=36.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH--ccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 190 FKPFNSNLDHSQKDAISKAL--SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 190 ~~~~~~~Ln~~Q~~Av~~~l--~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
+.|.....+.+++.+...-- ....+.+|.|+|||||||++..+...|...|..++.+
T Consensus 28 ~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 28 VTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp ------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34444567888777653200 0123678999999999999999888887777666554
No 420
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.79 E-value=0.14 Score=45.87 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
...++.|.||-|+||||.+..++..+ .....|.+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~ 65 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKS 65 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEE
Confidence 34588999999999999988887766 33334443
No 421
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.74 E-value=0.2 Score=46.76 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...++.|.||.|+||||++..+...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999988766544
No 422
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.72 E-value=0.15 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.||+|+|||+++..++..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 478899999999999998887663
No 423
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.56 E-value=0.21 Score=46.61 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
.++.+|.||.|+|||+++-++...+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 57999999999999998877665554
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.56 E-value=0.12 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.+|.||+|||||++...++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999998887553
No 425
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.53 E-value=0.45 Score=44.42 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (637)
+..|-|+.|+||||.+..+...| .+|.+++.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL-VKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEee
Confidence 67899999999999887777666 4576766653
No 426
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.47 E-value=0.25 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
....|.|||||||||++..+...+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999877666543
No 427
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.46 E-value=0.14 Score=58.45 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
..++|+||||||||+++..+...
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999877666543
No 428
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.39 E-value=0.22 Score=47.09 Aligned_cols=25 Identities=16% Similarity=0.573 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
...++.|.||.|+||||++..+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999988766543
No 429
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.36 E-value=0.22 Score=49.46 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (637)
.+..|.||+||||||++..+...+-..+.++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI 39 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 39 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEe
Confidence 4678999999999998887776554444444333
No 430
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.33 E-value=0.2 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+++|.||+|||||+++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478899999999999998888765
No 431
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.28 E-value=0.23 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
.++.|.||+|+||||++..+...+-.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 36779999999999987766665543
No 432
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.24 E-value=0.12 Score=59.03 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+++.||||||||+++..++..+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999877776554
No 433
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.13 E-value=0.31 Score=50.82 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHH
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
...++++..+....+++.|.||+|+||||++-.+..
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 344555555555556889999999999998876654
No 434
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.00 E-value=0.51 Score=51.24 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=31.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
+.++.|+|||||||++..+...+-..|..+.++. .|.+...+
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld-----~D~ir~~l 415 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD-----GDVVRTHL 415 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----HHHHHHHT
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC-----chHhhhhh
Confidence 5678999999999998888887777787776665 45555443
No 435
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.85 E-value=0.37 Score=52.03 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEE
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (637)
.++++.|+||+||||+...++..+-..+....+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v 68 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKV 68 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence 478899999999999999888877555544433
No 436
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.67 E-value=0.37 Score=53.00 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..+.++.|.+|+||||+.++++..+.+.|.+++++..
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~ 363 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTS 363 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeC
Confidence 3477889999999999999999999999999999743
No 437
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.65 E-value=0.22 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
-+..|.|+|||||||++..+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999987666543
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.50 E-value=0.22 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
+.+|.|++|+||||.+..+...+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 67899999999999887776554
No 439
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.36 E-value=0.28 Score=49.14 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++.|.||+|+||||++..+...+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 467899999999998876554443
No 440
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=88.28 E-value=0.19 Score=52.51 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHc--------c--CCeEEEEcCCCCchHHHHHHHHHHHH------HcCCeEEEecc
Q 006652 197 LDHSQKDAISKALS--------S--KNVFMLHGPPGTGKTTTVVEIILQEV------KRGSKILACAA 248 (637)
Q Consensus 197 Ln~~Q~~Av~~~l~--------~--~~~~lI~GpPGTGKT~ti~~~i~~l~------~~~~~ILv~a~ 248 (637)
++.+|...+..... . .-++++.|-.|+||||+.+.++..|. ..|++||++=.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~ 154 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDL 154 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 56777777765421 1 12566779999999999999999988 67899988743
No 441
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.89 E-value=0.41 Score=52.60 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 199 HSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 199 ~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
+...+.+...+. ..+++.|+||+|.|||+.+.+.+..
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 445556666664 2458899999999999999887643
No 442
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.78 E-value=0.37 Score=43.62 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCe
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSK 242 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ 242 (637)
..+.|.||.|+||||++..++..+-..|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~ 32 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLR 32 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCc
Confidence 367899999999999888777776655433
No 443
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=87.45 E-value=0.38 Score=49.26 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 006652 202 KDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (637)
Q Consensus 202 ~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (637)
.+||..... ...-.+|.||||||||+++..++.+....
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 456765443 23567999999999999998888877653
No 444
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.37 E-value=0.34 Score=45.08 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
..+..|.||+||||||+...++..|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4688999999999999888777654
No 445
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.33 E-value=0.52 Score=47.96 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=25.2
Q ss_pred HHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHH
Q 006652 203 DAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 203 ~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.||...+. ......|.||+|+||||++..++..
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 57777654 4568999999999999996655554
No 446
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=86.68 E-value=0.64 Score=44.19 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=30.3
Q ss_pred eEEEEcC-CCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 214 VFMLHGP-PGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 214 ~~lI~Gp-PGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
..+|.|. +|+|||++.+.++..+.++|.+|...=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 4667777 9999999999999999999999888654
No 447
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=86.47 E-value=0.56 Score=51.21 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcC-CeEEEec
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACA 247 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~a 247 (637)
+.+|.|+|||||||++..+...|-..| ..+.++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 567999999999998888887777666 5554443
No 448
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=86.28 E-value=0.75 Score=48.47 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=27.0
Q ss_pred HHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006652 204 AISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (637)
Q Consensus 204 Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (637)
+|..... ..+..+|.||||+|||+.+..++.....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 5554332 3467899999999999999999887654
No 449
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=86.13 E-value=1.3 Score=49.08 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHhcC
Q 006652 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (637)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL~~ 262 (637)
+.|.-..-. |. .| -+..=..|+|||.++.-.+..-.-.|+.|.|+|+|..-+..-.+-+.+
T Consensus 78 dvQligg~~-L~-~G-~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 78 DVQVMGGIA-LH-EG-KVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp HHHHHHHHH-HH-TT-CEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-Hh-CC-ChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHH
Confidence 455544432 32 23 266778999999876544433334699999999999877665555443
No 450
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.75 E-value=0.16 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (637)
.+.+|.|++||||||.+..+...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47789999999999988766544
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.73 E-value=0.43 Score=41.82 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=16.9
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
-.+|.|+||+|||+.+..++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999887665
No 452
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.63 E-value=0.43 Score=43.99 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.0
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
-++|.|++|+||||.+..++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 357999999999998776653
No 453
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.32 E-value=0.47 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
..-.+|.|+||+|||+.+..++.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34678999999999998876654
No 454
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.23 E-value=0.5 Score=50.34 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCC
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGS 241 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~ 241 (637)
-.+++.|.||+||||++..++..+-....
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 36789999999999999888877754443
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.17 E-value=0.45 Score=43.61 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (637)
.++|.|++|+||||.+..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999998876553
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.02 E-value=0.49 Score=42.05 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.0
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
.++|.|+||+|||+.+..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999887665
No 457
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=84.89 E-value=0.53 Score=47.77 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (637)
+++.+|.||.|+|||+.+-++...+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999998877665554
No 458
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=84.80 E-value=1.3 Score=42.34 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=30.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccchHHHHHHHHHh
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rL 260 (637)
+..|.|+|||||||+...+... .| +-++++.......+.+.+
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~---~g--~~~~~~~~~~~~~~~~~~ 44 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN---YS--AVKYQLAGPIKDALAYAW 44 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---SC--EEECCTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cC--CeEEecChHHHHHHHHHc
Confidence 4578999999999987655432 24 445788887777777765
No 459
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.66 E-value=0.52 Score=41.57 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=16.4
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999887665
No 460
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.47 E-value=0.48 Score=61.19 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=31.2
Q ss_pred HHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHcCCeEEEeccc
Q 006652 201 QKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (637)
Q Consensus 201 Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (637)
....+...+.....+++.||||||||.++...+..+ .+..++.+.+|
T Consensus 1293 ~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l--~~~~~~~infS 1339 (3245)
T 3vkg_A 1293 HVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAF--PDFEVVSLNFS 1339 (3245)
T ss_dssp HHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGC--TTEEEEEECCC
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhC--CCCceEEEEee
Confidence 334556666666789999999999999887666443 23344444443
No 461
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.39 E-value=0.54 Score=41.30 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=16.2
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999876655
No 462
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.31 E-value=0.82 Score=46.56 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=21.3
Q ss_pred HHHHHccCCeEEEEcCCCCchHHHHHHHH
Q 006652 205 ISKALSSKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 205 v~~~l~~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
+...+. ...+.|.||||+||||++-.++
T Consensus 209 L~~~~~-G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 209 LEEALT-GRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHT-TSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhcC-CCEEEEECCCCccHHHHHHHHh
Confidence 444443 5689999999999998886555
No 463
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=84.22 E-value=0.65 Score=43.97 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+..|.|+||||||++...++..+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 467899999999999887777654
No 464
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.20 E-value=0.6 Score=44.78 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=23.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
. .++.|.||.|+||||.+..+. -+..+ ...|.+.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIA-GIVKPDRGEVRLN 58 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEET
T ss_pred C-EEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEC
Confidence 5 788999999999998876544 33332 2355553
No 465
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=84.14 E-value=0.55 Score=41.14 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.4
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|++|+|||+.+..++
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999877665
No 466
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.95 E-value=0.56 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCchHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i 233 (637)
.-++|.|++|+|||+.+..+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999887665
No 467
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.88 E-value=0.61 Score=44.17 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=23.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
...++.|.||.|+||||.+..+. -+..+ ...|.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG-LLDAPTEGKVFLE 64 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEEC
Confidence 35688999999999998765443 33332 2355543
No 468
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=83.59 E-value=0.6 Score=41.65 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=16.7
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
-.+|.|+||+|||+.+..++
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999877664
No 469
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=83.55 E-value=0.6 Score=41.25 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5799999999999887665
No 470
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.53 E-value=0.57 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.+.|.||.|+||||++-.+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999888777654
No 471
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.40 E-value=0.64 Score=43.70 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=23.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
...++.|.||.|+||||.+..+. -+..+ ...|.+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~ 69 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIS-TYLKPLKGEIIYN 69 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEEC
Confidence 35688999999999998876544 33332 2355554
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.39 E-value=0.61 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
...++.|.||.|+||||.+..+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999998876554
No 473
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.34 E-value=0.64 Score=41.01 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999887665
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.28 E-value=0.69 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (637)
.++++|.||.|+||||.+-++...+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998775554444
No 475
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.14 E-value=0.71 Score=44.11 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=23.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
...++.|.||.|+||||.+..+. -+..+ ...|.+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYID 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEEC
Confidence 35689999999999998765443 33332 2355554
No 476
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=83.13 E-value=0.66 Score=40.76 Aligned_cols=19 Identities=21% Similarity=0.580 Sum_probs=16.2
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999876655
No 477
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.12 E-value=0.64 Score=41.58 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
-.+|.|+||+|||+.+..++
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999887665
No 478
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.89 E-value=0.67 Score=40.95 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=16.2
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999887655
No 479
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=82.70 E-value=0.98 Score=44.94 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=23.8
Q ss_pred HHHHHHHHccCCeEEEEcCCCCchHHHHHHHH
Q 006652 202 KDAISKALSSKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 202 ~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
.+.+...+. ..+..+.||+|+||||++-.+.
T Consensus 156 i~~L~~~l~-G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-CcEEEEECCCCCCHHHHHHHHH
Confidence 334555554 5688999999999999988776
No 480
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=82.66 E-value=0.69 Score=41.10 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.4
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
-.+|.|+||+|||+.+..++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 36799999999999876554
No 481
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.64 E-value=0.7 Score=40.80 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6799999999999887664
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=82.57 E-value=0.58 Score=42.40 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
-++|.|+||+|||+.+..++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999887655
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=82.56 E-value=0.71 Score=40.79 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=15.8
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999998876553
No 484
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.35 E-value=0.83 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIIL 234 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~ 234 (637)
...++.|.||.|+||||.+..+.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999988776554
No 485
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=82.33 E-value=0.74 Score=40.59 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.2
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999886665
No 486
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.31 E-value=0.67 Score=42.19 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCchHHHHHHHH
Q 006652 213 NVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i 233 (637)
.-.+|.|+||+|||+.+..++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999887765
No 487
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=82.30 E-value=0.73 Score=40.71 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
-.+|.|+||+|||+.+..++
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 35799999999999886655
No 488
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=82.20 E-value=0.75 Score=40.44 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.1
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006652 215 FMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (637)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999877665
No 489
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.18 E-value=0.76 Score=48.64 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=29.3
Q ss_pred HHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHc-C-CeEEEec
Q 006652 205 ISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-G-SKILACA 247 (637)
Q Consensus 205 v~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~-~~ILv~a 247 (637)
+...+.....+.|.||.|+||||.+..++..+... | ..|++-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 44444456789999999999998877666554433 4 3377654
No 490
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=82.16 E-value=1.2 Score=46.74 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcC-CeEEEeccchHHHHHH
Q 006652 203 DAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACAASNIAVDNI 256 (637)
Q Consensus 203 ~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~a~tn~Avd~l 256 (637)
.++...+. ......|.||.|+||||++..++.. .... ..|.++.....-+..+
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCCHHHHHHH
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEeceecHHHHHH
Confidence 47776644 4468899999999999986555444 4332 2455554433234343
No 491
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.08 E-value=0.72 Score=44.88 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=23.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
...++.|.||.|+||||.+..+. -+..+ ...|.+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVN 66 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEEC
Confidence 35688999999999998876544 33332 2355553
No 492
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.02 E-value=0.79 Score=44.92 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=23.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
...++.|.||.|+||||++..+.- ++.+ ...|.+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G-l~~p~~G~I~~~ 68 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG-ILKPSSGRILFD 68 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT-SSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc-CCCCCCeEEEEC
Confidence 356899999999999988765543 3332 2355554
No 493
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=82.01 E-value=1.1 Score=44.53 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=21.7
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHH
Q 006652 204 AISKALSSKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
.+...+. ..+..|.||+|+||||++-.+.
T Consensus 162 ~lf~~l~-geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 162 ELKEYLK-GKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHS-SSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHhc-CCeEEEECCCCCcHHHHHHHhc
Confidence 3444444 6789999999999998876554
No 494
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.88 E-value=0.83 Score=44.27 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=23.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
...++.|.||.|+||||.+..+.- +..+ ...|.+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~~ 67 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG-FLKADEGRVYFE 67 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEEC
Confidence 356899999999999988765543 3332 2355553
No 495
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.84 E-value=0.75 Score=44.06 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=23.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCeEEEe
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (637)
...++.|.||.|+||||.+..+. -+..+ ...|.+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFN 66 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEEC
Confidence 35688999999999998876544 33332 2355553
No 496
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=81.81 E-value=1.2 Score=46.81 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHcC-CeEE--EeccchHHHHHHHHHhc
Q 006652 203 DAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKIL--ACAASNIAVDNIVERLV 261 (637)
Q Consensus 203 ~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~IL--v~a~tn~Avd~l~~rL~ 261 (637)
++|...+. ..+-..|.||||+|||+++.+++.+..+.. .-++ .|.-...-+.++.+.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~ 205 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 205 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhh
Confidence 56765443 345689999999999999999998765432 2222 23334445555555553
No 497
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=81.78 E-value=0.76 Score=40.95 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=16.6
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006652 214 VFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (637)
-.+|.|+||+|||+.+..++
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999999877665
No 498
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=81.67 E-value=0.97 Score=40.29 Aligned_cols=22 Identities=32% Similarity=0.310 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 006652 212 KNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i 233 (637)
..-.+|.|+||+|||+.+..+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3467899999999999887664
No 499
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=81.66 E-value=1.5 Score=42.09 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=30.6
Q ss_pred CeEEEEcC-CCCchHHHHHHHHHHHHHcCCeEEEecc
Q 006652 213 NVFMLHGP-PGTGKTTTVVEIILQEVKRGSKILACAA 248 (637)
Q Consensus 213 ~~~lI~Gp-PGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (637)
...+|.|. +|+|||++.+.++..|.++|.+|.+.=|
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 35667776 9999999999999999999999887744
No 500
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.62 E-value=0.78 Score=43.62 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH
Q 006652 211 SKNVFMLHGPPGTGKTTTVVEII 233 (637)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i 233 (637)
...++.|.||.|+||||.+..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45688999999999998876544
Done!