Query 006654
Match_columns 636
No_of_seqs 454 out of 3300
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 4.3E-29 9.4E-34 243.9 13.6 123 340-486 15-147 (186)
2 cd02905 Macro_GDAP2_like Macro 100.0 1.7E-28 3.6E-33 230.6 13.7 119 344-484 2-125 (140)
3 PRK04143 hypothetical protein; 99.9 2.2E-26 4.8E-31 236.0 13.9 126 341-486 81-220 (264)
4 cd02906 Macro_1 Macro domain, 99.9 2.4E-26 5.3E-31 217.8 12.5 122 344-484 1-135 (147)
5 cd02908 Macro_Appr_pase_like M 99.9 2.8E-25 6.1E-30 214.5 13.3 119 344-485 1-124 (165)
6 cd02907 Macro_Af1521_BAL_like 99.9 6.1E-25 1.3E-29 214.1 14.2 122 342-484 1-130 (175)
7 PRK00431 RNase III inhibitor; 99.9 1.5E-24 3.2E-29 211.7 13.5 122 341-484 1-130 (177)
8 cd02903 Macro_BAL_like Macro d 99.9 3E-24 6.6E-29 201.2 13.3 115 344-484 2-123 (137)
9 COG2110 Predicted phosphatase 99.9 1.2E-23 2.5E-28 204.0 12.3 121 342-484 2-132 (179)
10 cd03330 Macro_2 Macro domain, 99.9 2.2E-22 4.7E-27 187.5 13.3 114 345-483 2-120 (133)
11 PRK04143 hypothetical protein; 99.8 3.6E-20 7.8E-25 190.3 4.8 197 111-319 25-245 (264)
12 TIGR01663 PNK-3'Pase polynucle 99.8 1.1E-18 2.5E-23 195.1 16.6 142 16-165 365-507 (526)
13 smart00506 A1pp Appr-1"-p proc 99.8 2.3E-18 4.9E-23 159.3 13.7 116 345-482 2-124 (133)
14 cd02749 Macro Macro domain, a 99.8 5.7E-18 1.2E-22 159.5 13.4 117 345-482 2-127 (147)
15 cd02900 Macro_Appr_pase Macro 99.8 2.5E-18 5.3E-23 168.6 11.1 134 343-485 19-172 (186)
16 PF13671 AAA_33: AAA domain; P 99.7 1.1E-17 2.4E-22 155.7 11.8 127 22-151 1-143 (143)
17 COG4639 Predicted kinase [Gene 99.7 1E-16 2.2E-21 150.5 12.5 136 19-165 1-150 (168)
18 PF01661 Macro: Macro domain; 99.7 4.5E-17 9.7E-22 147.2 8.4 100 367-481 1-108 (118)
19 PHA02530 pseT polynucleotide k 99.7 9.1E-16 2E-20 161.1 16.8 126 19-151 1-143 (300)
20 KOG2633 Hismacro and SEC14 dom 99.7 1.1E-16 2.4E-21 156.2 8.7 114 342-484 32-150 (200)
21 PRK13341 recombination factor 99.7 9.1E-18 2E-22 194.7 0.3 127 339-486 471-663 (725)
22 PRK06762 hypothetical protein; 99.6 1.2E-14 2.6E-19 139.5 16.8 147 19-174 1-156 (166)
23 COG4088 Predicted nucleotide k 99.6 9.8E-15 2.1E-19 142.8 12.3 133 21-161 2-151 (261)
24 TIGR03574 selen_PSTK L-seryl-t 99.6 1.9E-14 4E-19 147.7 15.0 130 22-158 1-142 (249)
25 cd02904 Macro_H2A_like Macro d 99.6 5E-16 1.1E-20 152.2 2.1 128 168-311 33-163 (186)
26 PF08433 KTI12: Chromatin asso 99.6 2.1E-14 4.5E-19 149.2 13.7 134 21-159 2-148 (270)
27 PRK14527 adenylate kinase; Pro 99.5 5.7E-13 1.2E-17 131.3 16.4 128 17-148 3-153 (191)
28 cd02021 GntK Gluconate kinase 99.5 5.8E-13 1.3E-17 125.6 14.9 126 22-156 1-143 (150)
29 PLN02674 adenylate kinase 99.5 4E-13 8.7E-18 137.4 14.3 175 20-207 31-243 (244)
30 PRK14531 adenylate kinase; Pro 99.5 1.2E-12 2.6E-17 128.2 16.9 107 19-127 1-130 (183)
31 TIGR01313 therm_gnt_kin carboh 99.4 1E-12 2.2E-17 125.8 13.7 139 23-174 1-155 (163)
32 cd02901 Macro_Poa1p_like Macro 99.4 5.5E-13 1.2E-17 125.1 11.5 112 345-480 2-122 (140)
33 KOG3079 Uridylate kinase/adeny 99.4 3.4E-12 7.3E-17 123.3 15.9 153 16-174 4-185 (195)
34 TIGR01359 UMP_CMP_kin_fam UMP- 99.4 2.4E-12 5.1E-17 125.3 15.0 105 22-128 1-127 (183)
35 PRK14532 adenylate kinase; Pro 99.4 2.7E-12 5.8E-17 125.8 15.3 123 22-147 2-148 (188)
36 cd00227 CPT Chloramphenicol (C 99.4 6.1E-12 1.3E-16 122.3 14.1 105 21-127 3-133 (175)
37 TIGR01351 adk adenylate kinase 99.4 1.8E-11 4E-16 122.5 17.4 103 23-129 2-128 (210)
38 cd02905 Macro_GDAP2_like Macro 99.4 2.4E-13 5.2E-18 128.0 2.9 105 194-308 35-140 (140)
39 PRK14530 adenylate kinase; Pro 99.4 4.4E-12 9.6E-17 127.3 12.2 173 22-209 5-213 (215)
40 COG0645 Predicted kinase [Gene 99.3 1.5E-11 3.2E-16 117.9 14.0 127 20-152 1-147 (170)
41 PRK00279 adk adenylate kinase; 99.3 3.8E-11 8.2E-16 120.6 17.3 106 22-129 2-131 (215)
42 PLN02459 probable adenylate ki 99.3 6.6E-11 1.4E-15 122.0 18.2 184 20-210 29-252 (261)
43 PRK14528 adenylate kinase; Pro 99.3 7.6E-11 1.6E-15 116.1 17.2 121 22-145 3-147 (186)
44 TIGR03575 selen_PSTK_euk L-ser 99.3 2.6E-11 5.7E-16 129.5 13.9 132 22-160 1-204 (340)
45 PRK14529 adenylate kinase; Pro 99.3 3.2E-11 6.9E-16 122.1 13.6 105 23-129 3-130 (223)
46 PLN02200 adenylate kinase fami 99.3 8.3E-11 1.8E-15 120.1 15.6 105 19-127 42-168 (234)
47 cd01428 ADK Adenylate kinase ( 99.3 9.1E-11 2E-15 114.9 15.2 104 23-128 2-128 (194)
48 PRK13808 adenylate kinase; Pro 99.3 6.9E-11 1.5E-15 125.8 15.3 102 23-126 3-128 (333)
49 PRK02496 adk adenylate kinase; 99.3 8.1E-11 1.8E-15 115.1 14.6 119 22-148 3-145 (184)
50 KOG3354 Gluconate kinase [Carb 99.3 1.3E-10 2.9E-15 109.2 14.9 131 17-155 9-162 (191)
51 cd02906 Macro_1 Macro domain, 99.3 1.5E-12 3.3E-17 123.7 1.9 108 188-305 34-147 (147)
52 PRK14526 adenylate kinase; Pro 99.3 2.2E-10 4.8E-15 115.2 17.5 171 23-210 3-210 (211)
53 PF06414 Zeta_toxin: Zeta toxi 99.2 4.5E-11 9.8E-16 118.7 11.0 114 16-129 11-145 (199)
54 COG0563 Adk Adenylate kinase a 99.2 1.6E-10 3.6E-15 113.1 14.2 145 22-175 2-172 (178)
55 TIGR01360 aden_kin_iso1 adenyl 99.2 3.7E-10 7.9E-15 109.9 16.2 122 20-146 3-147 (188)
56 PTZ00088 adenylate kinase 1; P 99.2 2.9E-10 6.2E-15 115.8 15.8 106 19-129 5-134 (229)
57 COG3265 GntK Gluconate kinase 99.2 1.8E-10 3.8E-15 107.9 12.8 134 26-173 1-150 (161)
58 cd02908 Macro_Appr_pase_like M 99.2 1.3E-11 2.9E-16 119.3 4.1 112 190-312 31-142 (165)
59 PRK09825 idnK D-gluconate kina 99.2 7E-10 1.5E-14 108.5 15.4 135 21-169 4-155 (176)
60 PF00406 ADK: Adenylate kinase 99.2 3.9E-10 8.4E-15 106.8 13.2 98 25-124 1-122 (151)
61 PRK11545 gntK gluconate kinase 99.2 6.1E-10 1.3E-14 107.5 14.5 134 26-173 1-151 (163)
62 cd02027 APSK Adenosine 5'-phos 99.2 2.7E-10 5.8E-15 108.3 11.6 101 22-124 1-116 (149)
63 KOG2134 Polynucleotide kinase 99.1 6.7E-14 1.5E-18 147.4 -16.1 413 84-557 3-421 (422)
64 PRK06217 hypothetical protein; 99.1 1E-09 2.2E-14 107.5 13.9 99 21-128 2-107 (183)
65 PF08303 tRNA_lig_kinase: tRNA 99.1 1.9E-09 4.2E-14 103.1 14.2 139 22-164 1-166 (168)
66 KOG3078 Adenylate kinase [Nucl 99.1 6.9E-10 1.5E-14 112.0 10.7 175 19-210 14-225 (235)
67 PF01583 APS_kinase: Adenylyls 99.1 1.8E-09 3.8E-14 103.5 13.0 103 19-123 1-118 (156)
68 cd02903 Macro_BAL_like Macro d 99.1 7.1E-11 1.5E-15 110.9 3.0 102 194-307 36-137 (137)
69 COG0703 AroK Shikimate kinase 99.0 1.2E-09 2.5E-14 105.8 11.1 115 22-146 4-135 (172)
70 cd02907 Macro_Af1521_BAL_like 99.0 1.3E-10 2.7E-15 113.5 4.4 114 188-312 31-149 (175)
71 COG2110 Predicted phosphatase 99.0 8.1E-11 1.8E-15 114.7 3.0 129 168-310 16-149 (179)
72 PRK08118 topology modulation p 99.0 1.3E-09 2.8E-14 105.6 11.0 96 22-127 3-101 (167)
73 PRK13948 shikimate kinase; Pro 99.0 2.5E-09 5.5E-14 105.1 12.3 101 16-124 6-122 (182)
74 TIGR00455 apsK adenylylsulfate 99.0 3.8E-09 8.3E-14 103.3 13.2 106 16-123 14-134 (184)
75 PRK07261 topology modulation p 99.0 1.4E-09 3E-14 105.8 9.9 98 22-128 2-102 (171)
76 PRK13946 shikimate kinase; Pro 99.0 3.6E-09 7.7E-14 103.9 12.6 122 19-149 9-146 (184)
77 KOG3062 RNA polymerase II elon 99.0 2.1E-09 4.5E-14 106.8 10.6 138 21-161 2-155 (281)
78 PLN02842 nucleotide kinase 99.0 3.9E-09 8.5E-14 117.7 13.2 170 24-209 1-202 (505)
79 PRK00431 RNase III inhibitor; 99.0 3.9E-10 8.4E-15 110.2 4.6 111 194-313 37-150 (177)
80 PRK10078 ribose 1,5-bisphospho 99.0 1.8E-08 3.8E-13 99.1 16.2 102 20-127 2-133 (186)
81 PRK05057 aroK shikimate kinase 99.0 6.3E-09 1.4E-13 101.3 12.9 143 20-173 4-162 (172)
82 KOG0562 Predicted hydrolase (H 99.0 2E-10 4.4E-15 107.9 1.7 55 559-616 2-56 (184)
83 PRK00131 aroK shikimate kinase 99.0 6.4E-09 1.4E-13 99.6 12.0 122 18-148 2-139 (175)
84 PRK00625 shikimate kinase; Pro 98.9 5.7E-09 1.2E-13 101.8 11.6 98 22-127 2-118 (173)
85 KOG2134 Polynucleotide kinase 98.9 1.2E-09 2.7E-14 115.6 7.0 145 14-166 263-408 (422)
86 PRK13947 shikimate kinase; Pro 98.9 6.7E-09 1.4E-13 100.0 11.1 100 22-129 3-118 (171)
87 PRK03846 adenylylsulfate kinas 98.9 1.5E-08 3.3E-13 100.5 13.8 106 14-121 18-138 (198)
88 PRK13949 shikimate kinase; Pro 98.9 1.2E-08 2.6E-13 99.1 12.4 96 22-125 3-114 (169)
89 KOG2633 Hismacro and SEC14 dom 98.9 7.2E-10 1.6E-14 108.8 3.0 101 194-313 61-170 (200)
90 PRK14737 gmk guanylate kinase; 98.9 4.8E-08 1.1E-12 96.4 15.3 134 18-164 2-169 (186)
91 PRK05537 bifunctional sulfate 98.9 1.8E-08 3.9E-13 115.1 13.9 104 18-122 390-509 (568)
92 PRK01184 hypothetical protein; 98.9 3.7E-08 8E-13 96.2 14.1 100 21-127 2-126 (184)
93 cd00464 SK Shikimate kinase (S 98.8 2E-08 4.2E-13 94.6 11.0 98 23-128 2-115 (154)
94 PRK00889 adenylylsulfate kinas 98.8 1.9E-08 4.2E-13 97.5 11.2 102 18-122 2-117 (175)
95 COG0529 CysC Adenylylsulfate k 98.8 3.3E-08 7.2E-13 95.4 12.2 107 15-123 18-139 (197)
96 PRK06547 hypothetical protein; 98.8 2.2E-08 4.9E-13 97.6 11.2 106 17-128 12-141 (172)
97 PF07931 CPT: Chloramphenicol 98.8 3.3E-08 7.1E-13 96.5 12.1 108 21-130 2-135 (174)
98 PF01591 6PF2K: 6-phosphofruct 98.8 4.2E-08 9.1E-13 99.3 13.3 131 17-147 9-167 (222)
99 PRK05541 adenylylsulfate kinas 98.8 1.5E-08 3.3E-13 98.3 9.8 104 18-124 5-121 (176)
100 PRK05506 bifunctional sulfate 98.8 4.1E-08 8.9E-13 114.0 14.8 105 16-122 456-575 (632)
101 COG0194 Gmk Guanylate kinase [ 98.8 3.9E-08 8.4E-13 95.9 12.1 136 19-169 3-172 (191)
102 PRK14021 bifunctional shikimat 98.8 3.4E-08 7.4E-13 112.5 13.1 137 18-163 4-157 (542)
103 PRK03839 putative kinase; Prov 98.8 2.3E-08 4.9E-13 97.5 9.5 91 22-127 2-102 (180)
104 PHA02595 tk.4 hypothetical pro 98.7 6.2E-08 1.3E-12 92.9 10.5 117 344-480 2-126 (154)
105 KOG4622 Predicted nucleotide k 98.7 1.8E-08 3.9E-13 98.1 6.4 133 21-158 2-170 (291)
106 PRK03731 aroL shikimate kinase 98.7 1.6E-07 3.4E-12 90.6 12.4 99 21-127 3-116 (171)
107 PRK08356 hypothetical protein; 98.7 5.3E-07 1.2E-11 89.3 16.4 99 20-127 5-137 (195)
108 PRK06696 uridine kinase; Valid 98.7 1.8E-07 3.9E-12 94.7 12.7 103 17-127 19-169 (223)
109 PRK12339 2-phosphoglycerate ki 98.7 2.7E-07 5.8E-12 92.0 13.5 105 19-129 2-144 (197)
110 TIGR02322 phosphon_PhnN phosph 98.7 5.9E-07 1.3E-11 87.2 15.6 113 21-146 2-145 (179)
111 PRK14738 gmk guanylate kinase; 98.7 1.5E-07 3.2E-12 94.2 11.0 122 14-148 7-161 (206)
112 PRK05480 uridine/cytidine kina 98.6 7.2E-07 1.6E-11 89.0 15.1 119 18-148 4-166 (209)
113 TIGR03263 guanyl_kin guanylate 98.6 8.7E-07 1.9E-11 86.0 15.2 101 21-127 2-135 (180)
114 cd02020 CMPK Cytidine monophos 98.6 5.2E-08 1.1E-12 90.7 5.7 95 22-127 1-105 (147)
115 COG4185 Uncharacterized protei 98.6 2.1E-07 4.5E-12 88.5 9.5 143 19-165 1-156 (187)
116 cd03330 Macro_2 Macro domain, 98.6 1.3E-08 2.8E-13 94.8 1.4 104 189-305 30-133 (133)
117 cd01672 TMPK Thymidine monopho 98.6 8.9E-07 1.9E-11 86.4 14.3 151 21-174 1-192 (200)
118 smart00072 GuKc Guanylate kina 98.6 4.2E-07 9E-12 89.2 11.9 133 20-165 2-168 (184)
119 PF13207 AAA_17: AAA domain; P 98.6 1.1E-07 2.4E-12 86.0 6.9 94 22-126 1-111 (121)
120 PRK00300 gmk guanylate kinase; 98.6 6.2E-07 1.4E-11 88.9 12.8 104 19-127 4-139 (205)
121 PRK08233 hypothetical protein; 98.6 3.4E-07 7.3E-12 88.6 10.2 97 20-127 3-120 (182)
122 PRK08154 anaerobic benzoate ca 98.5 5.6E-07 1.2E-11 95.7 12.4 126 15-148 128-270 (309)
123 KOG3347 Predicted nucleotide k 98.5 2.7E-07 5.9E-12 86.8 8.6 112 22-147 9-135 (176)
124 PTZ00301 uridine kinase; Provi 98.5 1.4E-06 3E-11 87.8 14.2 132 19-163 2-187 (210)
125 PRK04182 cytidylate kinase; Pr 98.5 1.2E-06 2.6E-11 84.4 13.3 94 22-127 2-114 (180)
126 PRK12338 hypothetical protein; 98.5 1.4E-06 3.1E-11 92.5 14.5 106 19-128 3-153 (319)
127 PRK00081 coaE dephospho-CoA ki 98.5 6.4E-07 1.4E-11 88.8 11.2 111 20-148 2-161 (194)
128 PRK04040 adenylate kinase; Pro 98.5 1.6E-06 3.4E-11 85.9 13.8 102 19-124 1-130 (188)
129 PRK13975 thymidylate kinase; P 98.5 1.5E-06 3.2E-11 85.5 13.6 107 19-126 1-135 (196)
130 COG1102 Cmk Cytidylate kinase 98.5 5.2E-07 1.1E-11 86.1 9.5 94 22-127 2-113 (179)
131 PF01202 SKI: Shikimate kinase 98.5 1.5E-07 3.3E-12 90.1 5.8 93 29-129 1-109 (158)
132 COG1936 Predicted nucleotide k 98.5 7.6E-07 1.6E-11 86.0 9.8 94 22-130 2-108 (180)
133 cd02024 NRK1 Nicotinamide ribo 98.5 8.4E-07 1.8E-11 87.7 10.3 35 22-57 1-35 (187)
134 PRK13973 thymidylate kinase; P 98.5 5.9E-06 1.3E-10 83.1 16.5 108 20-127 3-151 (213)
135 COG0572 Udk Uridine kinase [Nu 98.4 2.3E-06 4.9E-11 86.1 12.8 132 18-163 6-188 (218)
136 PLN02199 shikimate kinase 98.4 2.3E-06 5E-11 89.8 13.4 96 20-124 102-214 (303)
137 TIGR02173 cyt_kin_arch cytidyl 98.4 8.8E-07 1.9E-11 84.8 9.5 95 22-127 2-114 (171)
138 PRK00698 tmk thymidylate kinas 98.4 2.3E-06 5.1E-11 84.4 12.6 108 20-127 3-150 (205)
139 PRK04220 2-phosphoglycerate ki 98.4 3E-06 6.6E-11 89.3 12.8 110 16-129 88-239 (301)
140 cd02022 DPCK Dephospho-coenzym 98.4 1.3E-06 2.7E-11 85.5 9.1 109 22-148 1-158 (179)
141 PRK05416 glmZ(sRNA)-inactivati 98.4 5.5E-06 1.2E-10 87.3 14.3 105 18-130 4-112 (288)
142 TIGR00235 udk uridine kinase. 98.4 3.6E-06 7.9E-11 84.1 12.3 105 17-128 3-149 (207)
143 PRK07667 uridine kinase; Provi 98.4 3.1E-06 6.8E-11 83.8 11.7 102 18-127 15-161 (193)
144 TIGR00041 DTMP_kinase thymidyl 98.4 4.6E-06 1E-10 81.9 12.5 108 20-127 3-150 (195)
145 PF00625 Guanylate_kin: Guanyl 98.3 1.4E-05 3.1E-10 78.1 15.3 134 19-165 1-168 (183)
146 PRK14730 coaE dephospho-CoA ki 98.3 3.2E-06 7E-11 84.0 10.8 35 21-57 2-36 (195)
147 TIGR00152 dephospho-CoA kinase 98.3 2.2E-06 4.8E-11 84.2 9.4 110 22-148 1-160 (188)
148 PLN02924 thymidylate kinase 98.3 6.6E-06 1.4E-10 83.4 12.9 107 17-123 13-154 (220)
149 cd01673 dNK Deoxyribonucleosid 98.3 3.8E-06 8.3E-11 82.6 10.8 104 22-127 1-147 (193)
150 cd02900 Macro_Appr_pase Macro 98.3 2.3E-07 5E-12 91.5 2.0 52 257-308 133-186 (186)
151 PRK12337 2-phosphoglycerate ki 98.3 1.3E-05 2.9E-10 88.7 15.3 108 18-129 253-408 (475)
152 PRK13951 bifunctional shikimat 98.3 3.6E-06 7.9E-11 94.8 11.0 95 22-125 2-112 (488)
153 PTZ00322 6-phosphofructo-2-kin 98.3 3.6E-06 7.8E-11 98.4 11.3 127 20-149 215-367 (664)
154 PF11969 DcpS_C: Scavenger mRN 98.3 5.7E-07 1.2E-11 82.2 3.3 50 566-616 5-54 (116)
155 PRK13341 recombination factor 98.3 1.8E-07 3.9E-12 109.5 -0.3 80 232-313 592-681 (725)
156 cd02030 NDUO42 NADH:Ubiquinone 98.2 2.4E-05 5.1E-10 79.1 13.9 150 22-175 1-214 (219)
157 cd02028 UMPK_like Uridine mono 98.2 1.2E-05 2.6E-10 78.9 11.0 111 22-143 1-154 (179)
158 PLN02348 phosphoribulokinase 98.2 1.6E-05 3.5E-10 86.4 12.3 120 17-147 46-222 (395)
159 PF00485 PRK: Phosphoribulokin 98.1 1.4E-05 3E-10 79.1 10.5 112 22-145 1-164 (194)
160 cd02023 UMPK Uridine monophosp 98.1 3.9E-05 8.4E-10 75.9 13.5 36 22-57 1-37 (198)
161 PRK14733 coaE dephospho-CoA ki 98.1 1.9E-05 4.1E-10 79.2 11.3 113 19-148 5-165 (204)
162 PF13238 AAA_18: AAA domain; P 98.1 2.1E-06 4.6E-11 77.6 3.9 95 23-128 1-115 (129)
163 PRK14731 coaE dephospho-CoA ki 98.1 1.7E-05 3.7E-10 79.6 10.8 36 18-56 3-38 (208)
164 KOG0635 Adenosine 5'-phosphosu 98.1 1.5E-05 3.3E-10 75.2 9.5 105 16-122 27-146 (207)
165 PRK14732 coaE dephospho-CoA ki 98.1 1.4E-05 3.1E-10 79.5 9.6 109 22-148 1-158 (196)
166 PF01661 Macro: Macro domain; 98.1 1.1E-06 2.4E-11 79.2 1.2 98 194-300 17-118 (118)
167 PRK09270 nucleoside triphospha 98.0 3.6E-05 7.7E-10 78.2 11.5 122 16-146 29-198 (229)
168 PLN02422 dephospho-CoA kinase 98.0 2.9E-05 6.3E-10 79.3 10.2 109 22-148 3-162 (232)
169 PRK07429 phosphoribulokinase; 98.0 7.3E-05 1.6E-09 80.2 13.7 119 17-146 5-163 (327)
170 PRK05439 pantothenate kinase; 98.0 2E-05 4.4E-10 83.7 9.1 110 16-128 82-240 (311)
171 PRK14734 coaE dephospho-CoA ki 98.0 2.3E-05 5E-10 78.3 9.0 33 21-56 2-34 (200)
172 COG3709 Uncharacterized compon 98.0 0.00016 3.4E-09 69.4 13.1 140 19-175 4-175 (192)
173 PTZ00451 dephospho-CoA kinase; 97.9 6.1E-05 1.3E-09 77.6 11.1 34 21-56 2-35 (244)
174 PLN02772 guanylate kinase 97.9 0.00014 3E-09 79.3 14.1 134 19-164 134-303 (398)
175 PRK06761 hypothetical protein; 97.9 3.4E-05 7.3E-10 81.0 9.1 106 20-128 3-130 (282)
176 PF00004 AAA: ATPase family as 97.9 6.2E-05 1.4E-09 68.3 9.1 64 23-86 1-67 (132)
177 COG1428 Deoxynucleoside kinase 97.9 0.00024 5.3E-09 70.9 13.8 109 20-128 4-150 (216)
178 PRK13477 bifunctional pantoate 97.9 0.00016 3.4E-09 81.8 14.1 37 19-57 283-319 (512)
179 PRK07933 thymidylate kinase; V 97.9 0.00025 5.4E-09 71.5 14.2 106 22-127 2-155 (213)
180 cd02025 PanK Pantothenate kina 97.9 5.4E-05 1.2E-09 76.7 9.2 36 22-57 1-41 (220)
181 PF01121 CoaE: Dephospho-CoA k 97.9 3.9E-05 8.5E-10 75.5 7.9 110 21-148 1-159 (180)
182 TIGR00017 cmk cytidylate kinas 97.8 0.00036 7.7E-09 70.7 14.7 35 19-55 1-35 (217)
183 PRK13974 thymidylate kinase; P 97.8 0.00049 1.1E-08 69.2 15.1 108 20-127 3-157 (212)
184 cd02749 Macro Macro domain, a 97.8 8.5E-06 1.8E-10 76.6 2.1 102 194-304 35-146 (147)
185 PLN02318 phosphoribulokinase/u 97.8 0.00013 2.9E-09 82.9 11.7 40 17-57 62-101 (656)
186 PF02223 Thymidylate_kin: Thym 97.8 0.00032 6.9E-09 68.6 12.5 144 26-174 2-184 (186)
187 cd02019 NK Nucleoside/nucleoti 97.7 8.5E-05 1.8E-09 61.3 6.7 61 22-113 1-63 (69)
188 PRK15453 phosphoribulokinase; 97.7 0.00037 8E-09 73.0 12.9 40 18-57 3-45 (290)
189 cd02026 PRK Phosphoribulokinas 97.7 0.00024 5.2E-09 74.4 11.0 114 22-146 1-154 (273)
190 TIGR00554 panK_bact pantothena 97.7 0.00015 3.2E-09 76.5 9.2 40 17-56 59-103 (290)
191 smart00506 A1pp Appr-1"-p proc 97.7 1.3E-05 2.9E-10 73.9 1.0 66 235-300 68-133 (133)
192 PRK00091 miaA tRNA delta(2)-is 97.6 0.00037 7.9E-09 74.2 11.5 37 18-56 2-38 (307)
193 cd00071 GMPK Guanosine monopho 97.6 0.00016 3.5E-09 67.8 7.9 88 22-115 1-121 (137)
194 PLN02165 adenylate isopentenyl 97.6 0.00048 1E-08 73.8 12.4 108 19-128 42-198 (334)
195 COG0237 CoaE Dephospho-CoA kin 97.6 0.00018 3.9E-09 72.0 8.4 35 19-56 1-35 (201)
196 KOG3308 Uncharacterized protei 97.6 0.00018 3.9E-09 71.2 8.1 37 20-57 4-40 (225)
197 PRK03333 coaE dephospho-CoA ki 97.6 0.00025 5.5E-09 78.1 10.0 33 22-57 3-35 (395)
198 COG0125 Tmk Thymidylate kinase 97.6 0.0014 3E-08 66.0 14.4 110 19-128 2-151 (208)
199 KOG3877 NADH:ubiquinone oxidor 97.5 0.00074 1.6E-08 69.7 10.9 111 17-127 68-240 (393)
200 COG2074 2-phosphoglycerate kin 97.5 0.0005 1.1E-08 70.3 9.4 110 14-128 83-233 (299)
201 PRK13976 thymidylate kinase; P 97.5 0.00098 2.1E-08 67.1 11.5 104 22-125 2-145 (209)
202 COG3896 Chloramphenicol 3-O-ph 97.5 0.00098 2.1E-08 63.7 10.6 113 16-129 19-164 (205)
203 cd02029 PRK_like Phosphoribulo 97.5 0.0006 1.3E-08 70.9 9.9 37 22-58 1-40 (277)
204 PHA00729 NTP-binding motif con 97.4 0.00088 1.9E-08 68.1 10.7 105 20-127 17-141 (226)
205 KOG0733 Nuclear AAA ATPase (VC 97.3 0.00084 1.8E-08 75.8 9.8 67 19-85 222-290 (802)
206 PRK09087 hypothetical protein; 97.3 0.0014 3E-08 66.8 10.6 120 22-148 46-185 (226)
207 COG0283 Cmk Cytidylate kinase 97.3 0.0051 1.1E-07 61.8 14.1 32 21-54 5-36 (222)
208 PLN00020 ribulose bisphosphate 97.3 0.00076 1.7E-08 73.0 8.6 52 17-68 145-196 (413)
209 PF03668 ATP_bind_2: P-loop AT 97.3 0.0057 1.2E-07 64.1 14.3 115 21-148 2-125 (284)
210 PF14519 Macro_2: Macro-like d 97.3 0.0012 2.5E-08 68.6 9.1 162 314-485 14-200 (280)
211 PF05496 RuvB_N: Holliday junc 97.2 0.00067 1.5E-08 68.8 7.0 71 20-96 50-120 (233)
212 smart00382 AAA ATPases associa 97.2 0.00089 1.9E-08 59.7 7.0 36 20-55 2-40 (148)
213 PF00448 SRP54: SRP54-type pro 97.2 0.0012 2.7E-08 65.7 8.6 39 20-58 1-42 (196)
214 PRK05800 cobU adenosylcobinami 97.1 0.00047 1E-08 67.2 4.7 32 22-53 3-34 (170)
215 COG1072 CoaA Panthothenate kin 97.1 0.0018 3.8E-08 67.3 9.0 111 16-130 78-236 (283)
216 cd00009 AAA The AAA+ (ATPases 97.1 0.0023 4.9E-08 57.9 8.7 81 19-99 18-107 (151)
217 KOG0738 AAA+-type ATPase [Post 97.1 0.0041 8.9E-08 67.2 11.7 64 22-85 247-312 (491)
218 KOG1969 DNA replication checkp 97.1 0.0043 9.3E-08 71.5 12.2 38 16-53 322-359 (877)
219 PRK08084 DNA replication initi 97.1 0.0028 6.2E-08 64.8 10.0 24 21-44 46-69 (235)
220 TIGR01425 SRP54_euk signal rec 97.1 0.0041 8.9E-08 69.0 11.8 40 18-57 98-140 (429)
221 KOG0744 AAA+-type ATPase [Post 97.1 0.0025 5.3E-08 67.4 9.3 26 20-45 177-202 (423)
222 PF01745 IPT: Isopentenyl tran 97.0 0.0051 1.1E-07 61.9 10.8 129 21-153 2-165 (233)
223 PRK11860 bifunctional 3-phosph 97.0 0.0087 1.9E-07 70.3 14.6 36 20-57 442-477 (661)
224 TIGR00174 miaA tRNA isopenteny 97.0 0.0064 1.4E-07 64.2 11.8 33 22-56 1-33 (287)
225 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0017 3.6E-08 73.5 7.9 51 18-68 257-307 (489)
226 PF13401 AAA_22: AAA domain; P 97.0 0.0045 9.8E-08 56.3 9.4 95 19-114 3-125 (131)
227 COG2019 AdkA Archaeal adenylat 97.0 0.0089 1.9E-07 57.9 11.4 33 20-53 4-36 (189)
228 TIGR02881 spore_V_K stage V sp 97.0 0.0072 1.6E-07 62.6 11.9 66 20-87 42-115 (261)
229 PRK00771 signal recognition pa 97.0 0.0053 1.1E-07 68.5 11.5 41 18-58 93-136 (437)
230 cd03115 SRP The signal recogni 96.9 0.0092 2E-07 57.6 11.6 36 22-57 2-40 (173)
231 COG5324 Uncharacterized conser 96.9 0.0092 2E-07 65.7 12.4 154 20-177 374-546 (758)
232 PRK03992 proteasome-activating 96.9 0.0017 3.7E-08 71.4 7.2 46 18-63 163-208 (389)
233 PRK10867 signal recognition pa 96.9 0.0087 1.9E-07 66.7 12.6 41 18-58 98-142 (433)
234 KOG0739 AAA+-type ATPase [Post 96.9 0.0015 3.2E-08 68.3 5.8 69 17-85 162-233 (439)
235 PRK06620 hypothetical protein; 96.9 0.0074 1.6E-07 61.0 10.7 25 21-45 45-69 (214)
236 PF13173 AAA_14: AAA domain 96.9 0.0029 6.2E-08 58.3 6.9 78 21-99 3-83 (128)
237 PRK09518 bifunctional cytidyla 96.9 0.007 1.5E-07 71.7 11.9 33 22-56 3-35 (712)
238 cd02901 Macro_Poa1p_like Macro 96.8 0.00046 1E-08 64.6 1.5 49 257-305 90-138 (140)
239 PHA02544 44 clamp loader, smal 96.8 0.0082 1.8E-07 63.6 11.2 108 16-126 39-152 (316)
240 COG2256 MGS1 ATPase related to 96.8 0.0034 7.4E-08 68.2 8.2 80 21-103 49-131 (436)
241 KOG1384 tRNA delta(2)-isopente 96.8 0.0084 1.8E-07 63.6 10.8 108 19-128 6-161 (348)
242 PRK14974 cell division protein 96.8 0.009 1.9E-07 64.5 11.0 40 18-57 138-180 (336)
243 PTZ00454 26S protease regulato 96.8 0.0028 6E-08 70.0 7.3 39 18-56 177-215 (398)
244 PLN02748 tRNA dimethylallyltra 96.8 0.003 6.4E-08 70.9 7.5 37 17-55 19-55 (468)
245 TIGR00064 ftsY signal recognit 96.8 0.0076 1.6E-07 63.2 10.0 41 17-57 69-112 (272)
246 PRK05201 hslU ATP-dependent pr 96.8 0.0024 5.3E-08 70.3 6.5 43 20-62 50-93 (443)
247 TIGR00959 ffh signal recogniti 96.7 0.011 2.5E-07 65.7 11.8 41 18-58 97-141 (428)
248 PHA03132 thymidine kinase; Pro 96.7 0.012 2.6E-07 67.4 12.1 26 20-45 257-282 (580)
249 PRK10416 signal recognition pa 96.7 0.0041 8.9E-08 66.6 8.0 40 18-57 112-154 (318)
250 TIGR01242 26Sp45 26S proteasom 96.7 0.0027 5.8E-08 69.1 6.6 38 19-56 155-192 (364)
251 PTZ00361 26 proteosome regulat 96.7 0.0032 7E-08 70.2 7.3 44 19-62 216-259 (438)
252 COG1618 Predicted nucleotide k 96.7 0.017 3.6E-07 55.8 10.9 26 19-44 4-29 (179)
253 COG0541 Ffh Signal recognition 96.7 0.016 3.4E-07 63.8 12.1 42 17-58 97-141 (451)
254 CHL00181 cbbX CbbX; Provisiona 96.7 0.02 4.4E-07 60.4 12.7 66 20-87 59-132 (287)
255 KOG0730 AAA+-type ATPase [Post 96.7 0.011 2.3E-07 67.8 11.0 39 18-56 466-504 (693)
256 PF07728 AAA_5: AAA domain (dy 96.7 0.0018 3.9E-08 60.0 4.1 30 23-52 2-31 (139)
257 TIGR00390 hslU ATP-dependent p 96.6 0.0035 7.5E-08 69.1 6.7 44 19-62 46-90 (441)
258 KOG0780 Signal recognition par 96.6 0.0084 1.8E-07 64.8 9.2 101 15-115 96-225 (483)
259 KOG4238 Bifunctional ATP sulfu 96.6 0.0034 7.4E-08 66.8 6.1 104 21-124 51-169 (627)
260 PLN02840 tRNA dimethylallyltra 96.6 0.0053 1.2E-07 67.8 7.9 38 16-55 17-54 (421)
261 PRK04195 replication factor C 96.6 0.012 2.6E-07 66.5 10.6 37 18-54 37-73 (482)
262 PRK12377 putative replication 96.6 0.0076 1.6E-07 62.4 8.2 104 20-123 101-215 (248)
263 TIGR02640 gas_vesic_GvpN gas v 96.5 0.0057 1.2E-07 63.6 7.3 31 22-52 23-53 (262)
264 PHA02244 ATPase-like protein 96.5 0.0072 1.6E-07 65.7 8.2 68 23-92 122-195 (383)
265 KOG3220 Similar to bacterial d 96.5 0.022 4.7E-07 56.8 10.7 110 21-148 2-162 (225)
266 cd03331 Macro_Poa1p_like_SNF2 96.5 0.029 6.2E-07 53.9 11.3 124 345-478 2-132 (152)
267 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0021 4.4E-08 69.7 3.7 29 17-45 75-103 (361)
268 KOG0733 Nuclear AAA ATPase (VC 96.5 0.004 8.6E-08 70.5 5.9 49 20-68 545-593 (802)
269 PRK12724 flagellar biosynthesi 96.5 0.0099 2.1E-07 65.7 8.9 40 19-58 222-265 (432)
270 PRK14961 DNA polymerase III su 96.5 0.021 4.4E-07 62.3 11.3 110 17-127 35-171 (363)
271 PRK00080 ruvB Holliday junctio 96.4 0.0073 1.6E-07 64.7 7.6 64 19-88 50-113 (328)
272 PRK14962 DNA polymerase III su 96.4 0.011 2.3E-07 66.8 9.2 30 16-45 32-61 (472)
273 PRK06893 DNA replication initi 96.4 0.023 4.9E-07 57.9 10.8 24 21-44 40-63 (229)
274 PRK13342 recombination factor 96.4 0.016 3.5E-07 64.2 10.5 77 20-99 36-115 (413)
275 TIGR01241 FtsH_fam ATP-depende 96.4 0.0045 9.7E-08 70.2 6.2 40 18-57 86-125 (495)
276 PRK00023 cmk cytidylate kinase 96.4 0.0026 5.6E-08 64.8 3.8 35 20-56 4-38 (225)
277 TIGR01243 CDC48 AAA family ATP 96.4 0.0071 1.5E-07 71.9 8.0 50 19-68 486-535 (733)
278 PRK14956 DNA polymerase III su 96.4 0.018 3.9E-07 64.8 10.5 110 17-127 37-173 (484)
279 TIGR00635 ruvB Holliday juncti 96.4 0.0086 1.9E-07 63.1 7.4 64 19-88 29-92 (305)
280 TIGR02880 cbbX_cfxQ probable R 96.4 0.036 7.7E-07 58.5 12.0 65 22-87 60-131 (284)
281 COG0466 Lon ATP-dependent Lon 96.4 0.0064 1.4E-07 70.2 6.7 40 19-58 349-388 (782)
282 COG0464 SpoVK ATPases of the A 96.3 0.0078 1.7E-07 68.1 7.4 56 17-72 273-328 (494)
283 PRK08116 hypothetical protein; 96.3 0.012 2.6E-07 61.6 8.2 102 20-122 114-229 (268)
284 KOG2702 Predicted panthothenat 96.3 0.0074 1.6E-07 61.1 6.1 28 16-43 115-142 (323)
285 TIGR01243 CDC48 AAA family ATP 96.3 0.0088 1.9E-07 71.1 7.9 69 18-86 210-280 (733)
286 TIGR03499 FlhF flagellar biosy 96.3 0.0075 1.6E-07 63.5 6.3 39 19-57 193-236 (282)
287 PRK11889 flhF flagellar biosyn 96.3 0.023 4.9E-07 62.5 10.0 39 19-57 240-281 (436)
288 PRK14722 flhF flagellar biosyn 96.2 0.02 4.4E-07 62.6 9.6 71 19-90 136-228 (374)
289 PRK08727 hypothetical protein; 96.2 0.047 1E-06 55.7 11.7 23 21-43 42-64 (233)
290 PRK12726 flagellar biosynthesi 96.2 0.029 6.3E-07 61.4 10.5 41 18-58 204-247 (407)
291 PRK12723 flagellar biosynthesi 96.2 0.011 2.4E-07 65.0 7.2 40 18-57 172-218 (388)
292 KOG0234 Fructose-6-phosphate 2 96.2 0.04 8.7E-07 60.7 11.3 130 16-145 24-182 (438)
293 PRK05342 clpX ATP-dependent pr 96.1 0.012 2.7E-07 65.2 7.3 37 21-57 109-145 (412)
294 PF03029 ATP_bind_1: Conserved 96.1 0.0051 1.1E-07 63.2 3.7 30 25-54 1-33 (238)
295 PRK05642 DNA replication initi 96.0 0.027 5.9E-07 57.6 8.9 36 21-56 46-84 (234)
296 TIGR03689 pup_AAA proteasome A 96.0 0.014 3E-07 66.3 7.2 27 19-45 215-241 (512)
297 CHL00176 ftsH cell division pr 96.0 0.011 2.4E-07 69.0 6.5 39 19-57 215-253 (638)
298 PLN03025 replication factor C 96.0 0.03 6.5E-07 59.8 9.3 26 18-44 33-58 (319)
299 COG1660 Predicted P-loop-conta 96.0 0.026 5.7E-07 58.2 8.3 102 21-131 2-110 (286)
300 PRK12323 DNA polymerase III su 96.0 0.045 9.7E-07 63.6 11.1 113 15-127 33-176 (700)
301 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.013 2.9E-07 58.6 6.1 63 17-87 35-100 (226)
302 PRK14957 DNA polymerase III su 95.9 0.059 1.3E-06 61.8 11.9 111 17-127 35-171 (546)
303 PRK07952 DNA replication prote 95.9 0.026 5.7E-07 58.3 8.3 102 21-122 100-213 (244)
304 COG1419 FlhF Flagellar GTP-bin 95.9 0.027 5.9E-07 61.7 8.6 81 19-99 202-306 (407)
305 TIGR00362 DnaA chromosomal rep 95.9 0.11 2.3E-06 57.5 13.3 67 21-87 137-209 (405)
306 KOG0707 Guanylate kinase [Nucl 95.9 0.11 2.4E-06 52.8 12.2 117 17-146 33-184 (231)
307 PRK06921 hypothetical protein; 95.9 0.031 6.6E-07 58.5 8.5 98 20-119 117-230 (266)
308 TIGR01618 phage_P_loop phage n 95.9 0.011 2.4E-07 60.1 5.0 35 17-55 9-43 (220)
309 PRK14955 DNA polymerase III su 95.9 0.056 1.2E-06 59.7 11.0 30 16-45 34-63 (397)
310 COG1222 RPT1 ATP-dependent 26S 95.8 0.012 2.6E-07 63.2 5.4 53 19-71 184-236 (406)
311 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.045 9.7E-07 51.6 8.8 85 19-103 25-117 (144)
312 KOG4359 Protein kinase C inhib 95.8 0.0056 1.2E-07 56.8 2.3 40 576-616 47-86 (166)
313 TIGR01650 PD_CobS cobaltochela 95.8 0.0096 2.1E-07 63.8 4.3 32 21-52 65-96 (327)
314 PRK12402 replication factor C 95.8 0.063 1.4E-06 57.0 10.7 24 22-45 38-61 (337)
315 COG2884 FtsE Predicted ATPase 95.8 0.12 2.5E-06 51.5 11.4 56 69-127 147-208 (223)
316 KOG1533 Predicted GTPase [Gene 95.8 0.007 1.5E-07 61.5 3.1 35 23-57 5-42 (290)
317 PRK14949 DNA polymerase III su 95.7 0.087 1.9E-06 63.2 12.5 31 15-45 33-63 (944)
318 TIGR00150 HI0065_YjeE ATPase, 95.7 0.0098 2.1E-07 55.8 3.8 27 19-45 21-47 (133)
319 PRK12422 chromosomal replicati 95.7 0.12 2.6E-06 58.0 13.0 35 22-56 143-180 (445)
320 PRK14960 DNA polymerase III su 95.7 0.066 1.4E-06 62.3 11.1 30 16-45 33-62 (702)
321 PRK04296 thymidine kinase; Pro 95.7 0.093 2E-06 51.9 10.9 91 20-112 2-115 (190)
322 KOG0737 AAA+-type ATPase [Post 95.7 0.013 2.7E-07 63.2 4.9 52 17-68 124-175 (386)
323 cd01131 PilT Pilus retraction 95.7 0.096 2.1E-06 52.1 11.0 24 22-45 3-26 (198)
324 PRK14963 DNA polymerase III su 95.6 0.057 1.2E-06 61.5 10.2 30 16-45 32-61 (504)
325 PRK06645 DNA polymerase III su 95.6 0.091 2E-06 59.8 11.8 30 16-45 39-68 (507)
326 PRK07003 DNA polymerase III su 95.6 0.053 1.1E-06 63.9 9.9 112 16-127 34-171 (830)
327 PF06068 TIP49: TIP49 C-termin 95.6 0.016 3.4E-07 62.8 5.3 43 20-62 50-94 (398)
328 PRK07764 DNA polymerase III su 95.6 0.07 1.5E-06 64.1 11.2 112 16-127 33-172 (824)
329 PF13521 AAA_28: AAA domain; P 95.6 0.012 2.5E-07 56.4 3.8 26 23-51 2-27 (163)
330 PRK00149 dnaA chromosomal repl 95.6 0.14 3.1E-06 57.4 13.1 65 22-86 150-220 (450)
331 PF05729 NACHT: NACHT domain 95.6 0.0095 2.1E-07 55.9 3.2 24 21-44 1-24 (166)
332 PRK14958 DNA polymerase III su 95.6 0.062 1.4E-06 61.3 10.3 111 16-127 34-171 (509)
333 PRK05703 flhF flagellar biosyn 95.6 0.057 1.2E-06 60.2 9.7 38 20-57 221-263 (424)
334 PLN02796 D-glycerate 3-kinase 95.6 0.015 3.2E-07 62.8 4.9 39 18-56 98-139 (347)
335 PRK14723 flhF flagellar biosyn 95.6 0.088 1.9E-06 62.3 11.6 71 19-90 184-276 (767)
336 cd00544 CobU Adenosylcobinamid 95.5 0.014 3E-07 57.0 4.2 32 22-53 1-32 (169)
337 PRK09183 transposase/IS protei 95.5 0.045 9.8E-07 56.9 8.2 103 20-122 102-214 (259)
338 PLN03046 D-glycerate 3-kinase; 95.5 0.016 3.5E-07 64.0 4.9 40 17-56 209-251 (460)
339 PRK08099 bifunctional DNA-bind 95.5 0.034 7.3E-07 61.5 7.6 39 19-57 218-257 (399)
340 PRK09169 hypothetical protein; 95.5 0.028 6E-07 71.8 7.5 98 21-128 2111-2223(2316)
341 PF01695 IstB_IS21: IstB-like 95.5 0.014 3.1E-07 57.2 4.1 103 19-125 46-161 (178)
342 cd03222 ABC_RNaseL_inhibitor T 95.5 0.035 7.6E-07 54.5 6.8 81 19-99 24-113 (177)
343 KOG0651 26S proteasome regulat 95.5 0.04 8.7E-07 58.3 7.4 57 19-75 165-221 (388)
344 PRK08181 transposase; Validate 95.4 0.036 7.7E-07 58.1 7.1 102 20-121 106-216 (269)
345 PRK12727 flagellar biosynthesi 95.4 0.044 9.5E-07 62.3 8.2 39 19-57 349-392 (559)
346 PRK14964 DNA polymerase III su 95.4 0.097 2.1E-06 59.3 11.0 112 16-128 31-169 (491)
347 PRK14952 DNA polymerase III su 95.4 0.14 3.1E-06 59.2 12.5 113 15-127 30-170 (584)
348 PRK06835 DNA replication prote 95.4 0.04 8.6E-07 59.4 7.3 101 21-122 184-297 (329)
349 PF00308 Bac_DnaA: Bacterial d 95.3 0.19 4.2E-06 50.9 11.9 122 22-148 36-198 (219)
350 PF07726 AAA_3: ATPase family 95.3 0.013 2.9E-07 54.5 3.1 30 23-52 2-31 (131)
351 PRK14721 flhF flagellar biosyn 95.3 0.078 1.7E-06 58.9 9.6 71 19-90 190-282 (420)
352 PRK00440 rfc replication facto 95.3 0.11 2.3E-06 54.8 10.3 22 23-44 41-62 (319)
353 KOG0731 AAA+-type ATPase conta 95.3 0.026 5.5E-07 66.3 5.9 40 20-59 344-383 (774)
354 PRK06995 flhF flagellar biosyn 95.3 0.1 2.2E-06 59.0 10.4 39 19-57 255-298 (484)
355 COG2255 RuvB Holliday junction 95.2 0.035 7.7E-07 58.1 6.2 70 20-95 52-121 (332)
356 COG1126 GlnQ ABC-type polar am 95.2 0.014 3E-07 58.9 3.1 25 18-42 26-50 (240)
357 cd01130 VirB11-like_ATPase Typ 95.2 0.28 6.2E-06 48.1 12.4 109 19-128 24-150 (186)
358 PRK10751 molybdopterin-guanine 95.2 0.019 4E-07 56.3 3.9 27 19-45 5-31 (173)
359 PF02367 UPF0079: Uncharacteri 95.2 0.022 4.8E-07 52.7 4.2 28 18-45 13-40 (123)
360 PF13245 AAA_19: Part of AAA d 95.2 0.018 3.8E-07 48.7 3.3 23 20-42 10-32 (76)
361 PRK06526 transposase; Provisio 95.2 0.03 6.6E-07 58.1 5.7 101 20-120 98-207 (254)
362 COG1224 TIP49 DNA helicase TIP 95.2 0.03 6.4E-07 60.2 5.6 56 20-75 65-122 (450)
363 TIGR00382 clpX endopeptidase C 95.2 0.019 4E-07 63.7 4.3 33 21-53 117-149 (413)
364 PRK10733 hflB ATP-dependent me 95.2 0.033 7.3E-07 65.3 6.6 39 20-58 185-223 (644)
365 PRK14086 dnaA chromosomal repl 95.2 0.16 3.4E-06 58.9 11.7 34 23-56 317-355 (617)
366 PRK07994 DNA polymerase III su 95.1 0.092 2E-06 61.4 9.9 30 16-45 34-63 (647)
367 PRK14088 dnaA chromosomal repl 95.1 0.23 5E-06 55.7 12.6 23 22-44 132-154 (440)
368 TIGR02397 dnaX_nterm DNA polym 95.1 0.22 4.7E-06 53.5 12.1 29 17-45 33-61 (355)
369 PRK13768 GTPase; Provisional 95.1 0.024 5.3E-07 58.7 4.6 37 19-55 1-40 (253)
370 cd00984 DnaB_C DnaB helicase C 95.1 0.23 5.1E-06 50.3 11.7 36 18-53 11-50 (242)
371 cd01120 RecA-like_NTPases RecA 95.0 0.022 4.8E-07 52.9 3.8 23 22-44 1-23 (165)
372 PRK08903 DnaA regulatory inact 95.0 0.15 3.1E-06 51.5 10.0 34 20-53 42-78 (227)
373 cd00983 recA RecA is a bacter 95.0 0.083 1.8E-06 56.8 8.5 36 18-53 53-91 (325)
374 cd01278 aprataxin_related apra 95.0 0.022 4.8E-07 50.5 3.5 32 575-606 15-46 (104)
375 TIGR00678 holB DNA polymerase 95.0 0.18 3.8E-06 49.4 10.2 30 16-45 10-39 (188)
376 COG0467 RAD55 RecA-superfamily 95.0 0.023 5E-07 58.8 4.2 70 18-87 21-93 (260)
377 COG0324 MiaA tRNA delta(2)-iso 95.0 0.069 1.5E-06 56.8 7.7 36 19-56 2-37 (308)
378 cd00820 PEPCK_HprK Phosphoenol 95.0 0.029 6.4E-07 50.6 4.2 33 20-56 15-47 (107)
379 COG1223 Predicted ATPase (AAA+ 95.0 0.24 5.2E-06 51.4 11.2 40 18-57 149-188 (368)
380 PF13191 AAA_16: AAA ATPase do 95.0 0.019 4E-07 55.2 3.1 30 16-45 20-49 (185)
381 PRK12269 bifunctional cytidyla 95.0 0.023 4.9E-07 68.4 4.4 36 20-57 34-69 (863)
382 TIGR03015 pepcterm_ATPase puta 94.9 0.021 4.6E-07 58.7 3.6 28 18-45 41-68 (269)
383 KOG0727 26S proteasome regulat 94.9 0.028 6.1E-07 57.8 4.3 44 19-62 188-231 (408)
384 COG1855 ATPase (PilT family) [ 94.9 0.018 3.8E-07 63.5 3.0 26 20-45 263-288 (604)
385 PRK14729 miaA tRNA delta(2)-is 94.9 0.073 1.6E-06 56.6 7.6 34 20-56 4-37 (300)
386 PRK09435 membrane ATPase/prote 94.9 0.027 6E-07 60.7 4.4 39 17-55 53-94 (332)
387 KOG0734 AAA+-type ATPase conta 94.9 0.035 7.6E-07 62.3 5.2 38 20-57 337-374 (752)
388 PRK08691 DNA polymerase III su 94.9 0.14 3E-06 60.1 10.2 31 15-45 33-63 (709)
389 cd03216 ABC_Carb_Monos_I This 94.9 0.1 2.2E-06 50.1 7.9 81 19-99 25-124 (163)
390 cd03223 ABCD_peroxisomal_ALDP 94.8 0.18 4E-06 48.5 9.6 85 19-103 26-138 (166)
391 PF00910 RNA_helicase: RNA hel 94.8 0.02 4.3E-07 51.2 2.7 23 23-45 1-23 (107)
392 TIGR00763 lon ATP-dependent pr 94.8 0.061 1.3E-06 64.5 7.5 34 20-53 347-380 (775)
393 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.058 1.3E-06 54.4 6.3 36 18-53 18-56 (229)
394 TIGR02639 ClpA ATP-dependent C 94.8 0.055 1.2E-06 64.4 7.1 25 20-44 203-227 (731)
395 PF07724 AAA_2: AAA domain (Cd 94.8 0.043 9.3E-07 53.6 5.1 39 20-58 3-45 (171)
396 KOG0741 AAA+-type ATPase [Post 94.8 0.083 1.8E-06 59.4 7.8 103 22-149 258-362 (744)
397 PF00931 NB-ARC: NB-ARC domain 94.8 0.094 2E-06 54.3 8.0 26 18-43 17-42 (287)
398 PRK14970 DNA polymerase III su 94.8 0.14 3E-06 55.7 9.6 30 16-45 35-64 (367)
399 PRK05896 DNA polymerase III su 94.8 0.21 4.6E-06 57.8 11.4 29 17-45 35-63 (605)
400 TIGR03877 thermo_KaiC_1 KaiC d 94.7 0.06 1.3E-06 55.0 6.3 63 18-87 19-91 (237)
401 PRK14969 DNA polymerase III su 94.7 0.22 4.7E-06 57.1 11.3 29 17-45 35-63 (527)
402 PRK09361 radB DNA repair and r 94.6 0.054 1.2E-06 54.6 5.6 54 1-54 1-60 (225)
403 PF06745 KaiC: KaiC; InterPro 94.6 0.023 4.9E-07 57.3 2.8 36 18-53 17-56 (226)
404 KOG0735 AAA+-type ATPase [Post 94.6 0.17 3.8E-06 58.7 9.9 63 20-82 701-763 (952)
405 PRK08939 primosomal protein Dn 94.5 0.16 3.4E-06 54.3 9.0 105 19-123 155-270 (306)
406 PRK14951 DNA polymerase III su 94.5 0.29 6.2E-06 57.1 11.8 30 16-45 34-63 (618)
407 TIGR03707 PPK2_P_aer polyphosp 94.5 0.23 5.1E-06 50.8 9.9 108 18-130 29-161 (230)
408 PRK14950 DNA polymerase III su 94.5 0.23 5E-06 57.7 11.1 29 17-45 35-63 (585)
409 PRK14954 DNA polymerase III su 94.5 0.27 5.9E-06 57.4 11.5 29 17-45 35-63 (620)
410 TIGR02012 tigrfam_recA protein 94.5 0.1 2.3E-06 56.0 7.5 35 19-53 54-91 (321)
411 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.2 4.3E-06 47.5 8.7 80 20-99 25-122 (157)
412 COG1484 DnaC DNA replication p 94.4 0.098 2.1E-06 54.3 7.1 81 19-99 104-192 (254)
413 KOG0989 Replication factor C, 94.4 0.16 3.4E-06 53.9 8.4 107 20-127 57-181 (346)
414 TIGR00750 lao LAO/AO transport 94.4 0.049 1.1E-06 57.8 4.9 39 17-55 31-72 (300)
415 COG0470 HolB ATPase involved i 94.4 0.23 4.9E-06 52.3 9.9 28 18-45 22-49 (325)
416 TIGR01526 nadR_NMN_Atrans nico 94.4 0.042 9.1E-07 59.1 4.3 29 20-48 162-190 (325)
417 PF03266 NTPase_1: NTPase; In 94.4 0.033 7.1E-07 54.2 3.2 22 23-44 2-23 (168)
418 PRK05564 DNA polymerase III su 94.4 0.27 5.9E-06 52.3 10.4 112 15-127 21-145 (313)
419 PRK06731 flhF flagellar biosyn 94.3 0.2 4.3E-06 52.6 9.2 39 19-57 74-115 (270)
420 PRK15455 PrkA family serine pr 94.3 0.03 6.5E-07 64.1 3.2 28 18-45 101-128 (644)
421 COG1219 ClpX ATP-dependent pro 94.3 0.042 9.1E-07 58.3 4.1 55 20-76 97-152 (408)
422 TIGR00101 ureG urease accessor 94.3 0.04 8.7E-07 55.0 3.8 26 20-45 1-26 (199)
423 PF01230 HIT: HIT domain; Int 94.3 0.027 5.8E-07 49.4 2.2 38 576-614 6-43 (98)
424 KOG1532 GTPase XAB1, interacts 94.3 0.043 9.2E-07 57.1 3.9 39 16-54 15-56 (366)
425 PF08477 Miro: Miro-like prote 94.3 0.038 8.3E-07 49.2 3.2 22 23-44 2-23 (119)
426 PRK07133 DNA polymerase III su 94.2 0.28 6.1E-06 57.9 11.0 30 16-45 36-65 (725)
427 PF03215 Rad17: Rad17 cell cyc 94.2 0.039 8.4E-07 63.0 3.9 29 18-46 43-71 (519)
428 PRK06647 DNA polymerase III su 94.2 0.37 8E-06 55.7 11.8 112 16-127 34-171 (563)
429 TIGR00073 hypB hydrogenase acc 94.2 0.043 9.3E-07 54.8 3.8 29 17-45 19-47 (207)
430 PF10662 PduV-EutP: Ethanolami 94.2 0.034 7.5E-07 52.8 2.9 22 22-43 3-24 (143)
431 PTZ00202 tuzin; Provisional 94.2 0.26 5.5E-06 55.1 9.9 34 19-52 285-318 (550)
432 PRK08451 DNA polymerase III su 94.2 0.28 6.1E-06 56.2 10.6 30 16-45 32-61 (535)
433 cd01918 HprK_C HprK/P, the bif 94.1 0.046 9.9E-07 52.3 3.6 33 21-56 15-47 (149)
434 PRK14948 DNA polymerase III su 94.1 0.29 6.2E-06 57.2 10.8 26 20-45 38-63 (620)
435 PRK05707 DNA polymerase III su 94.1 0.62 1.3E-05 50.3 12.7 123 4-127 6-158 (328)
436 COG4240 Predicted kinase [Gene 94.1 0.11 2.4E-06 52.9 6.3 68 18-85 48-140 (300)
437 CHL00206 ycf2 Ycf2; Provisiona 94.1 0.049 1.1E-06 69.2 4.6 41 18-58 1628-1668(2281)
438 PRK14965 DNA polymerase III su 94.1 0.39 8.4E-06 55.7 11.8 111 16-127 34-171 (576)
439 cd03228 ABCC_MRP_Like The MRP 94.1 0.41 8.8E-06 46.2 10.2 26 19-44 27-52 (171)
440 PRK14959 DNA polymerase III su 94.1 0.36 7.9E-06 56.2 11.4 27 19-45 37-63 (624)
441 cd01124 KaiC KaiC is a circadi 94.1 0.057 1.2E-06 52.2 4.2 31 23-53 2-35 (187)
442 PRK08533 flagellar accessory p 94.1 0.087 1.9E-06 53.8 5.7 25 19-43 23-47 (230)
443 PRK06305 DNA polymerase III su 94.0 0.32 6.9E-06 54.8 10.6 29 17-45 36-64 (451)
444 KOG0741 AAA+-type ATPase [Post 94.0 0.1 2.2E-06 58.7 6.5 64 19-85 537-606 (744)
445 PF00005 ABC_tran: ABC transpo 94.0 0.037 8E-07 50.9 2.6 26 19-44 10-35 (137)
446 PF04665 Pox_A32: Poxvirus A32 94.0 0.054 1.2E-06 55.8 4.0 29 18-46 11-39 (241)
447 PF01926 MMR_HSR1: 50S ribosom 94.0 0.044 9.6E-07 49.0 3.0 21 23-43 2-22 (116)
448 PRK00089 era GTPase Era; Revie 93.9 0.32 6.9E-06 51.0 9.8 24 19-42 4-27 (292)
449 cd04163 Era Era subfamily. Er 93.9 0.049 1.1E-06 50.3 3.3 24 20-43 3-26 (168)
450 PRK11331 5-methylcytosine-spec 93.9 0.086 1.9E-06 58.9 5.7 26 20-45 194-219 (459)
451 TIGR03709 PPK2_rel_1 polyphosp 93.9 0.27 5.9E-06 51.4 9.1 108 18-130 54-186 (264)
452 PF13479 AAA_24: AAA domain 93.9 0.1 2.2E-06 52.5 5.8 22 19-40 2-23 (213)
453 TIGR02237 recomb_radB DNA repa 93.9 0.059 1.3E-06 53.5 4.0 37 18-54 10-49 (209)
454 cd01129 PulE-GspE PulE/GspE Th 93.9 0.42 9E-06 49.9 10.4 81 19-99 79-170 (264)
455 COG0396 sufC Cysteine desulfur 93.9 0.048 1E-06 55.5 3.3 37 19-57 29-65 (251)
456 PF01078 Mg_chelatase: Magnesi 93.9 0.041 9E-07 55.3 2.8 26 20-45 22-47 (206)
457 PRK04328 hypothetical protein; 93.8 0.12 2.6E-06 53.4 6.2 62 18-86 21-92 (249)
458 PRK09111 DNA polymerase III su 93.8 0.4 8.7E-06 55.8 11.1 31 15-45 41-71 (598)
459 cd01394 radB RadB. The archaea 93.8 0.061 1.3E-06 53.9 3.9 37 18-54 17-56 (218)
460 PF03205 MobB: Molybdopterin g 93.8 0.058 1.3E-06 50.9 3.5 23 22-44 2-24 (140)
461 COG0714 MoxR-like ATPases [Gen 93.8 0.066 1.4E-06 57.5 4.4 31 22-52 45-75 (329)
462 PF03796 DnaB_C: DnaB-like hel 93.8 0.29 6.4E-06 50.5 9.1 95 18-112 17-137 (259)
463 cd01122 GP4d_helicase GP4d_hel 93.8 0.53 1.2E-05 48.6 11.0 35 19-53 29-67 (271)
464 PF01443 Viral_helicase1: Vira 93.8 0.041 8.9E-07 55.2 2.6 21 23-43 1-21 (234)
465 COG0465 HflB ATP-dependent Zn 93.7 0.089 1.9E-06 60.6 5.4 41 18-58 181-221 (596)
466 PF13189 Cytidylate_kin2: Cyti 93.7 0.74 1.6E-05 45.0 11.3 33 22-56 1-33 (179)
467 TIGR02788 VirB11 P-type DNA tr 93.7 0.87 1.9E-05 48.5 12.7 125 19-145 143-284 (308)
468 CHL00095 clpC Clp protease ATP 93.7 0.12 2.7E-06 62.2 6.9 65 21-85 201-279 (821)
469 PRK00411 cdc6 cell division co 93.6 0.19 4.1E-06 54.9 7.7 27 18-44 53-79 (394)
470 PRK13900 type IV secretion sys 93.6 0.75 1.6E-05 49.7 12.1 108 19-127 159-284 (332)
471 KOG1534 Putative transcription 93.6 0.07 1.5E-06 53.6 3.7 35 21-55 4-41 (273)
472 KOG2028 ATPase related to the 93.5 0.15 3.1E-06 55.2 6.2 23 23-45 165-187 (554)
473 cd03114 ArgK-like The function 93.5 0.075 1.6E-06 50.5 3.8 33 23-55 2-37 (148)
474 TIGR03708 poly_P_AMP_trns poly 93.5 0.64 1.4E-05 52.7 11.7 112 17-130 37-170 (493)
475 KOG4235 Mitochondrial thymidin 93.5 1.1 2.3E-05 44.8 11.7 47 100-149 148-195 (244)
476 cd03116 MobB Molybdenum is an 93.5 0.073 1.6E-06 51.4 3.6 25 21-45 2-26 (159)
477 PRK10787 DNA-binding ATP-depen 93.5 0.086 1.9E-06 63.1 5.0 38 19-56 348-385 (784)
478 TIGR00176 mobB molybdopterin-g 93.4 0.059 1.3E-06 51.7 2.9 23 22-44 1-23 (155)
479 COG0552 FtsY Signal recognitio 93.4 0.34 7.3E-06 52.0 8.8 41 17-57 136-179 (340)
480 PRK14087 dnaA chromosomal repl 93.4 0.23 5.1E-06 55.8 8.1 104 23-127 144-265 (450)
481 TIGR01420 pilT_fam pilus retra 93.4 0.67 1.5E-05 50.2 11.4 106 20-126 122-243 (343)
482 PF08298 AAA_PrkA: PrkA AAA do 93.4 0.073 1.6E-06 57.5 3.9 30 16-45 84-113 (358)
483 COG3911 Predicted ATPase [Gene 93.4 0.071 1.5E-06 50.9 3.3 37 21-57 10-46 (183)
484 PRK13764 ATPase; Provisional 93.4 0.36 7.8E-06 56.1 9.7 27 19-45 256-282 (602)
485 PRK10865 protein disaggregatio 93.4 0.16 3.6E-06 61.4 7.3 25 20-44 199-223 (857)
486 PRK05563 DNA polymerase III su 93.4 0.46 1E-05 54.9 10.6 29 17-45 35-63 (559)
487 PRK09354 recA recombinase A; P 93.3 0.29 6.3E-06 53.2 8.4 36 18-53 58-96 (349)
488 PHA02624 large T antigen; Prov 93.3 0.1 2.2E-06 60.1 4.9 30 16-45 427-456 (647)
489 TIGR00436 era GTP-binding prot 93.3 0.43 9.3E-06 49.7 9.4 22 22-43 2-23 (270)
490 PRK10463 hydrogenase nickel in 93.3 0.1 2.3E-06 55.1 4.7 35 18-52 102-138 (290)
491 KOG0743 AAA+-type ATPase [Post 93.3 0.14 3.1E-06 56.6 5.9 32 22-53 237-268 (457)
492 COG1117 PstB ABC-type phosphat 93.2 0.069 1.5E-06 54.0 3.1 28 18-45 31-58 (253)
493 COG5192 BMS1 GTP-binding prote 93.2 0.084 1.8E-06 59.4 4.0 29 17-45 66-94 (1077)
494 TIGR01166 cbiO cobalt transpor 93.2 0.073 1.6E-06 52.2 3.2 26 19-44 17-42 (190)
495 PRK14953 DNA polymerase III su 93.2 0.81 1.8E-05 52.0 12.0 29 17-45 35-63 (486)
496 cd03292 ABC_FtsE_transporter F 93.2 0.071 1.5E-06 53.1 3.2 26 19-44 26-51 (214)
497 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.2 0.073 1.6E-06 53.2 3.3 26 19-44 29-54 (218)
498 PRK07940 DNA polymerase III su 93.1 1.1 2.4E-05 49.5 12.8 27 19-45 35-61 (394)
499 PF13555 AAA_29: P-loop contai 93.1 0.092 2E-06 42.8 3.2 22 21-42 24-45 (62)
500 cd03225 ABC_cobalt_CbiO_domain 93.1 0.078 1.7E-06 52.7 3.4 26 19-44 26-51 (211)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=99.96 E-value=4.3e-29 Score=243.93 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=109.0
Q ss_pred cCCeEEEEEEccc--ceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecC
Q 006654 340 INPKKFFTFVGDI--TRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL 414 (636)
Q Consensus 340 ~~~~~v~v~~GDI--t~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l 414 (636)
+.+.+|.|++||| |++. +||||||||++|. ++|||++||+++||++|++||+++. +++++|++++|+
T Consensus 15 ~~~~~i~i~~gDI~~t~~~------vDaIVNaaN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~- 86 (186)
T cd02904 15 FLGQKLSLVQSDISIGSID------VEGIVHPTNADID-LKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQ- 86 (186)
T ss_pred cCCCEEEEEECCcccccee------ccEEEcCCccccC-CCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEcc-
Confidence 4568899999999 9997 9999999999999 8999999999999999999998763 789999999998
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR 486 (636)
Q Consensus 415 ~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~ 486 (636)
.+.|+|+||||+|||.|+.. +..++|++||++||++| .|||||+||++.+-.|.-+
T Consensus 87 ------a~~Lp~k~VIHtVgP~~~~~----------~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~ 147 (186)
T cd02904 87 ------AHGLPAKFVIHCHSPQWGSD----------KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQT 147 (186)
T ss_pred ------CCCCCCCEEEEeCCCCCCCC----------chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHH
Confidence 24589999999999999653 24789999999999986 5999999999977776543
No 2
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=99.96 E-value=1.7e-28 Score=230.57 Aligned_cols=119 Identities=20% Similarity=0.242 Sum_probs=106.3
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCC
Q 006654 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423 (636)
Q Consensus 344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~ 423 (636)
+|.|++||||+++ +|||||+||+.|. ++|||++||+++||++|++||++. +++++|++++|+ ...
T Consensus 2 ki~l~~GdIt~~~------vDaIVNaan~~l~-~~ggv~~aI~~aaG~~l~~e~~~~-~~~~~G~~~~T~-------~~~ 66 (140)
T cd02905 2 RIVLWEGDICNLN------VDAIVNSTNETLT-DKNPISDKIFARAGSELREEIQTL-GGCRTGEAKLTK-------GYN 66 (140)
T ss_pred eEEEEeCccCccc------CCEEEeCCccccC-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCcEEEec-------CCC
Confidence 5889999999998 9999999999999 899999999999999999999987 779999999999 245
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 424 l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
|+|+||||+|||+|+...+ ..+.++|++||+++|+.| .|||||+||++....|.
T Consensus 67 L~~k~VIH~vgP~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~ 125 (140)
T cd02905 67 LPARFIIHTVGPKYNVKYR-------TAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPP 125 (140)
T ss_pred CCccEEEEecCCccCCCCC-------cHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCH
Confidence 8899999999999987533 245789999999999986 59999999988776654
No 3
>PRK04143 hypothetical protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=236.05 Aligned_cols=126 Identities=27% Similarity=0.255 Sum_probs=108.6
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCC-----ChhhHHHHHhhcHHHHHHHHHhc----CCCCCCcEEE
Q 006654 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-----GGVNAAIFSAAGPALEVATAERA----KSLYPGNSVI 411 (636)
Q Consensus 341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~g-----gGVa~AI~~aaG~~l~~e~~~~~----~~~~~G~avv 411 (636)
.+.+|.||+||||++. +||||||||+.|. ++ |||++||+++||++|+++|+++. ..+++|+|++
T Consensus 81 ~~~~i~i~~GDIt~l~------vDAIVNAANs~L~-g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~i 153 (264)
T PRK04143 81 KYDNIFLWQGDITRLK------VDAIVNAANSRLL-GCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKI 153 (264)
T ss_pred CCCEEEEEECCcceee------cCEEEeCcccccc-cCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 4678999999999998 9999999999998 54 89999999999999999999873 4689999999
Q ss_pred ecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654 412 VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR 486 (636)
Q Consensus 412 T~l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~ 486 (636)
|+ + +.|+|+||||||||.|+.+.. .....++|++||++||+.| .||||||||+|.+..|.-+
T Consensus 154 T~------~-~nLp~kyVIHtVgP~~~~g~~------~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~ 220 (264)
T PRK04143 154 TR------A-YNLPAKYVIHTVGPIIRKQPV------SPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEE 220 (264)
T ss_pred ec------C-CCCCCCEEEEECCCcccCCCC------CcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHH
Confidence 99 3 458899999999999977321 1245789999999999986 5999999999987776544
No 4
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.94 E-value=2.4e-26 Score=217.79 Aligned_cols=122 Identities=26% Similarity=0.229 Sum_probs=104.0
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcC----CCChhhHHHHHhhcHHHHHHHHHhc----CCCCCCcEEEecCC
Q 006654 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKP----GGGGVNAAIFSAAGPALEVATAERA----KSLYPGNSVIVPLP 415 (636)
Q Consensus 344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~----~ggGVa~AI~~aaG~~l~~e~~~~~----~~~~~G~avvT~l~ 415 (636)
+|+|++|||+++. +||||||||+.|.. ++|||++||+++||++|++||+++. +.+++|++++|+
T Consensus 1 ~i~v~~GdIt~~~------~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~-- 72 (147)
T cd02906 1 SIYLWKGDITTLK------VDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITP-- 72 (147)
T ss_pred CeEEEECCcCCcc------CCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEe--
Confidence 4789999999998 99999999999971 3489999999999999999998873 368999999999
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
.+.|+|+||||+|||.|.....+ ..+.++|++||+++|+.| .|||||+||++.+..+.
T Consensus 73 -----~~~L~~k~VIHavgP~~~~~~~~------~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~ 135 (147)
T cd02906 73 -----GYNLPAKYVIHTVGPIIERGLTT------PIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQ 135 (147)
T ss_pred -----CCCCCCCEEEEECCCcccCCCCC------ccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCH
Confidence 24478999999999999765320 245789999999999987 69999999988766553
No 5
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=99.92 E-value=2.8e-25 Score=214.48 Aligned_cols=119 Identities=33% Similarity=0.335 Sum_probs=104.9
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCC
Q 006654 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423 (636)
Q Consensus 344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~ 423 (636)
+|+|++|||+++. +||||||||+.|. ++|||++||+++||++|++||+++ +++++|++++|+ .+.
T Consensus 1 ~i~i~~GdI~~~~------~daIVn~an~~l~-~~ggv~~ai~~~~G~~l~~e~~~~-~~~~~G~~v~T~-------~~~ 65 (165)
T cd02908 1 KIEIIQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECREL-RGCPTGEAVITS-------GYN 65 (165)
T ss_pred CeEEEecccceee------cCEEEECCCCccc-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCCEEEee-------CCC
Confidence 4789999999998 9999999999999 899999999999999999999998 678999999998 245
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 424 l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
|+|+||||+|||.|..... ...++|++||+++|+.+ .|||||+||.+.+..+.-
T Consensus 66 l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~ 124 (165)
T cd02908 66 LPAKYVIHTVGPVWRGGQH--------NEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLD 124 (165)
T ss_pred CCCCEEEEEcCCcccCCCC--------cHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHH
Confidence 8899999999999976521 45799999999999975 589999999886665543
No 6
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=99.92 E-value=6.1e-25 Score=214.06 Aligned_cols=122 Identities=29% Similarity=0.318 Sum_probs=107.4
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecCCCCC
Q 006654 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS 418 (636)
Q Consensus 342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l~~~~ 418 (636)
|++|+|++|||+++. +||||||||..|. ++|||++||+++||++|++||+++ .+++++|++++|+
T Consensus 1 ~~~i~i~~GdI~~~~------~DaIVn~an~~~~-~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~----- 68 (175)
T cd02907 1 GVTLSVIKGDITRFP------VDAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTS----- 68 (175)
T ss_pred CcEEEEEECCcceee------cCEEEECCCCCcC-CCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEec-----
Confidence 578999999999997 9999999999999 899999999999999999999876 3789999999998
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 419 ~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
.+.|+|++|||+|||.|..... ..+.++|++||++||+.+ .|||||+||.+....+.
T Consensus 69 --~~~L~~k~IiH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~ 130 (175)
T cd02907 69 --AGKLPCKYVIHAVGPRWSGGEA-------EECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPL 130 (175)
T ss_pred --CCCCCCCEEEEeCCCcCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCH
Confidence 3458899999999999977532 246799999999999986 59999999988655543
No 7
>PRK00431 RNase III inhibitor; Provisional
Probab=99.92 E-value=1.5e-24 Score=211.73 Aligned_cols=122 Identities=32% Similarity=0.341 Sum_probs=107.7
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCC
Q 006654 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST 417 (636)
Q Consensus 341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~ 417 (636)
+|++|.|++|||+++. +||||||||.+|. ++|||++||+++||++|++||+++. +++++|++++|+
T Consensus 1 ~~~~i~i~~Gdi~~~~------~daIVn~aN~~~~-~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~---- 69 (177)
T PRK00431 1 MGMRIEVVQGDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITS---- 69 (177)
T ss_pred CCcEEEEEeCCccccc------CCEEEECCCcccc-CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEec----
Confidence 4689999999999997 9999999999999 8999999999999999999999873 789999999998
Q ss_pred CCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 418 ~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
.+.|+|++|||+|||.|+.... .+.+.|++||+++|+.+ .|||||+||.+....+-
T Consensus 70 ---~~~l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~ 130 (177)
T PRK00431 70 ---AGRLPAKYVIHTVGPVWRGGED--------NEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPL 130 (177)
T ss_pred ---CCCCCCCEEEEecCCeecCCCC--------cHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCH
Confidence 2458899999999999976532 25799999999999875 69999999988655553
No 8
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.91 E-value=3e-24 Score=201.19 Aligned_cols=115 Identities=25% Similarity=0.236 Sum_probs=100.5
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCC-CcCCCChhhHHHHHhhcHHHHHHHHHhcCCCC-CCcEEEecCCCCCCCC
Q 006654 344 KFFTFVGDITRLYTGGGLCCNVIANAANWR-LKPGGGGVNAAIFSAAGPALEVATAERAKSLY-PGNSVIVPLPSTSPLC 421 (636)
Q Consensus 344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~-L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~-~G~avvT~l~~~~~~~ 421 (636)
+|+|++|||++++ +|||||+||+. +. ++|||++||+++||++|++||+++ ..+. +|++++|+ .
T Consensus 2 ~i~i~~GdI~~~~------~DaIVN~an~~~~~-~~ggv~~aI~~~~G~~l~~~~~~~-~~~~~~G~~~vT~-------~ 66 (137)
T cd02903 2 TLQVAKGDIEDET------TDVIVNSVNPDLFL-LKGGVSKAILRKAGPELQKELDKA-KLGQTVGSVIVTK-------G 66 (137)
T ss_pred EEEEEeCccCCcc------CCEEEECCCCccCC-CCCCHHHHHHHhccHHHHHHHHHH-cCCCCCCeEEEec-------C
Confidence 6899999999998 99999999999 66 899999999999999999999998 4444 69999998 2
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
+.|+|+||||+++|+|... ..+.|++||++||+.+ .|||||+||++.+..+.
T Consensus 67 ~~L~~k~IiH~~~p~~~~~-----------~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~ 123 (137)
T cd02903 67 GNLPCKYVYHVVLPNWSNG-----------ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPK 123 (137)
T ss_pred CCCCCCEEEEecCCCCCCc-----------hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCH
Confidence 4478999999999999643 3689999999999975 69999999988765543
No 9
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=203.97 Aligned_cols=121 Identities=35% Similarity=0.394 Sum_probs=105.9
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc-----CCCCCCcEEEecCCC
Q 006654 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA-----KSLYPGNSVIVPLPS 416 (636)
Q Consensus 342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~-----~~~~~G~avvT~l~~ 416 (636)
+..|.+++||||++. +|||||+||+.|. +||||+.||++++||+|+++|.+.. +.+++|+|++|+
T Consensus 2 ~~~i~~v~GDIt~~~------~daIVnaAN~~l~-~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~--- 71 (179)
T COG2110 2 MTNIRVVQGDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITE--- 71 (179)
T ss_pred CceEEEEecccceee------hhheeecccccCC-CCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEcc---
Confidence 467999999999997 9999999999999 9999999999999999999999974 336789999999
Q ss_pred CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 417 ~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
.++|+.+||||+|||.|....+ ...+.|+.||+++|+++ .|||||+|+++.+-.+-
T Consensus 72 ----~~~l~a~~ViH~vgp~~~~g~~--------~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~ 132 (179)
T COG2110 72 ----AGRLPAKYVIHTVGPSWRGGSK--------DEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPL 132 (179)
T ss_pred ----CcCCCCCEEEecCCCcccCCCh--------hHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCH
Confidence 3557789999999999877643 35689999999999986 59999999988765543
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.88 E-value=2.2e-22 Score=187.46 Aligned_cols=114 Identities=30% Similarity=0.309 Sum_probs=100.9
Q ss_pred EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCC
Q 006654 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE 424 (636)
Q Consensus 345 v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~l 424 (636)
|++++|||+++. +|||||++|..|. ++|||+++|++++|++++++|.+. +++++|++++|+ .+.|
T Consensus 2 i~i~~GdI~~~~------~DaIVn~~N~~~~-~g~Gva~ai~~~~G~~~~~~~~~~-~~~~~G~~~~t~-------~~~l 66 (133)
T cd03330 2 LEVVQGDITKVD------ADAIVNAANSRLR-MGGGVAGAIKRAGGSVIEREAVRK-APIPVGEAVITG-------AGDL 66 (133)
T ss_pred EEEEEccccccc------CCEEEeCCCCCCC-CCCcHHHHHHHHhCHHHHHHHHHc-CCCCCCeEEEEe-------CCCC
Confidence 789999999997 9999999999999 899999999999999999999886 789999999997 2457
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHH-----HhhccccCCCCCCCc
Q 006654 425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLSKGCNE 483 (636)
Q Consensus 425 ~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~~~~~~~~ 483 (636)
+|++|||+++|.+.. . ...+.|++||+++|+.+. |||||+||.+.+..+
T Consensus 67 ~~k~Iih~~~~~~~~-~---------~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~ 120 (133)
T cd03330 67 PARYVIHAATMEEPG-R---------SSEESVRKATRAALALADELGIESVAFPAMGTGVGGLP 120 (133)
T ss_pred CCCEEEEeCCCCCCC-C---------CHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCC
Confidence 889999999998654 2 236799999999999874 999999998866554
No 11
>PRK04143 hypothetical protein; Provisional
Probab=99.79 E-value=3.6e-20 Score=190.33 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=148.8
Q ss_pred EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCC-----------ccEEEEeCC---hhHHHHHHHHh
Q 006654 111 LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG-----------FSRITLCQN---ENDVQAALDTY 176 (636)
Q Consensus 111 Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Eg-----------fd~Viii~~---~~~vdaiv~~~ 176 (636)
+.+|.+...+|..-|...+.++|..++++.++.+.+.+.......+ -..+.+... .-++|+++++.
T Consensus 25 ~~~~~~~~~~~~~~r~l~n~r~p~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~i~~GDIt~l~vDAIVNAA 104 (264)
T PRK04143 25 LPLPNDLEEQQDLLRALANVRPALPLSDEYLNLQDAYLQDENAERGVVDLKDLQPIKYDNIFLWQGDITRLKVDAIVNAA 104 (264)
T ss_pred ccCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHhhcCcccHHhcCccCCCEEEEEECCcceeecCEEEeCc
Confidence 5667777778888888888888888888877765544321110001 123433332 23578888863
Q ss_pred --ccCCCCcccC-CCccCCCCCchhhHHHHHH----HHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccc
Q 006654 177 --SGLGPLDTLP-HGSFGQKNPDAKIQLGIMK----FLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLS 249 (636)
Q Consensus 177 --~~Lgpfd~~p-hgc~~~~~~~~~v~~~i~k----~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (636)
..+|+| .| |||.++ ++|.++|.+|+. +++++|+..++|.. + .|.++++.|.++-|.+-|.+
T Consensus 105 Ns~L~g~~--~p~~ggId~-aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a-~--------iT~~~nLp~kyVIHtVgP~~ 172 (264)
T PRK04143 105 NSRLLGCF--QPNHDCIDN-AIHTFAGVQLRLDCAEIMTEQGRKEATGQA-K--------ITRAYNLPAKYVIHTVGPII 172 (264)
T ss_pred ccccccCC--CCCCCcHHH-HHHHHhChHHHHHHHHHHHHcCCCCCCceE-E--------EecCCCCCCCEEEEECCCcc
Confidence 366888 77 899999 999999999985 45556777788852 2 36677888888888888877
Q ss_pred ccc--chhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEEEEe
Q 006654 250 DAA--GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLV 319 (636)
Q Consensus 250 ~~~--~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~-~~~v~~ 319 (636)
..+ +....++|..||.+||.+|++++++|||||+||||+||||.++||+|++++|++|+++++. .+++++
T Consensus 173 ~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~ 245 (264)
T PRK04143 173 RKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSKLKVVFN 245 (264)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 642 3455778999999999999999999999999999999999999999999999999998865 456553
No 12
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.79 E-value=1.1e-18 Score=195.06 Aligned_cols=142 Identities=26% Similarity=0.412 Sum_probs=127.0
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD 95 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~ 95 (636)
...+|.||+|+|+|||||||||+++++..+ +.+|++|.+. .+..+...+.++|++|++||||+||.++++|..
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g--~~~vn~D~lg-----~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~ 437 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAG--YKHVNADTLG-----STQNCLTACERALDQGKRCAIDNTNPDAASRAK 437 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcC--CeEECcHHHH-----HHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHH
Confidence 346799999999999999999999999877 8899999983 567788999999999999999999999999999
Q ss_pred HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCC
Q 006654 96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (636)
Q Consensus 96 l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~ 165 (636)
|+++ ++.++++++++|++|.++|++|+..|...... ...++++++.+|.++|++|...|||..|..++-
T Consensus 438 ~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s-~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 438 FLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSA-HIKIKDMVFNGMKKKFEAPALAEGFIAIHEINF 507 (526)
T ss_pred HHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcc-cCCCCHHHHHHHHhhCCCCCcccCceEEEEEeC
Confidence 9999 99999999999999999999999999763221 236788999999999999999999999887653
No 13
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.78 E-value=2.3e-18 Score=159.26 Aligned_cols=116 Identities=32% Similarity=0.317 Sum_probs=98.3
Q ss_pred EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH-HHHHHHhc-CCCCCCcEEEecCCCCCCCCC
Q 006654 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL-EVATAERA-KSLYPGNSVIVPLPSTSPLCG 422 (636)
Q Consensus 345 v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l-~~e~~~~~-~~~~~G~avvT~l~~~~~~~~ 422 (636)
+++++|||+++. +|+|||++|..+. ++||++++|++++|+++ ++++.+.. +.+++|++++|+. +
T Consensus 2 i~~~~Gdi~~~~------~d~IV~~~n~~~~-~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~-------~ 67 (133)
T smart00506 2 LKVVKGDITKPR------ADAIVNAANSDGA-HGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEG-------G 67 (133)
T ss_pred eEEEeCCCCccc------CCEEEECCCcccC-CCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecC-------C
Confidence 678999999997 9999999999999 89999999999999996 66666553 4799999999982 3
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCC
Q 006654 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCN 482 (636)
Q Consensus 423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~ 482 (636)
.+++++|||+++|.|.... ..+.+.|++||++||+.+ .||+||.||.+....
T Consensus 68 ~~~~~~Iih~~~p~~~~~~--------~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~ 124 (133)
T smart00506 68 NLPAKYVIHAVGPRASGHS--------NEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGV 124 (133)
T ss_pred CCCCCEEEEeCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCC
Confidence 3778999999999997642 246899999999999875 499999999775443
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.76 E-value=5.7e-18 Score=159.51 Aligned_cols=117 Identities=31% Similarity=0.353 Sum_probs=99.6
Q ss_pred EEEEEcccce-ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcC--CCCCCcEEEecCCCCCCCC
Q 006654 345 FFTFVGDITR-LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK--SLYPGNSVIVPLPSTSPLC 421 (636)
Q Consensus 345 v~v~~GDIt~-~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~--~~~~G~avvT~l~~~~~~~ 421 (636)
|.+++|||++ .. +|+|||++|..+. +|||++.+|++++|+++++++++... .+++|++++|+.
T Consensus 2 i~~~~GDi~~~~~------~d~IVn~~n~~~~-~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~------- 67 (147)
T cd02749 2 IKVVSGDITKPLG------SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKG------- 67 (147)
T ss_pred EEEEECCCCCCCC------CCEEEeCCCCCCC-CCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcC-------
Confidence 6789999999 76 9999999999999 89999999999999999999998742 268999999982
Q ss_pred CCCC-ccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCC
Q 006654 422 GREG-VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCN 482 (636)
Q Consensus 422 ~~l~-~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~ 482 (636)
+.++ +++|||+++|.|....+ ..+.++|++||++||..+ .|||||.||.+....
T Consensus 68 ~~~~~~~~vih~~~p~~~~~~~-------~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~ 127 (147)
T cd02749 68 YNLDGAKYLIHIVGPKYNQGNN-------KAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGF 127 (147)
T ss_pred CCCCcCCEEEEeCCCCCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCC
Confidence 2344 89999999999976532 245789999999999875 479999999775544
No 15
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.76 E-value=2.5e-18 Score=168.64 Aligned_cols=134 Identities=19% Similarity=0.125 Sum_probs=99.1
Q ss_pred eEEEEEEcccceecc----cCcccccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh-----cCCCCCCcEEEe
Q 006654 343 KKFFTFVGDITRLYT----GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER-----AKSLYPGNSVIV 412 (636)
Q Consensus 343 ~~v~v~~GDIt~~~~----~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG-~~l~~e~~~~-----~~~~~~G~avvT 412 (636)
..+.++.|+++++.. ....++||||||||+.+. +||||++||++++| ++|+++|++. .+.+++|++++|
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~-mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it 97 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGY-LDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV 97 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccC-CCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence 446667777766541 011128999999999999 99999999999999 6999999664 388999999999
Q ss_pred cCCC---CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-------HHhhccccCCCCCCC
Q 006654 413 PLPS---TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-------LSIVRSQEKLSKGCN 482 (636)
Q Consensus 413 ~l~~---~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-------~siaf~~~~~~~~~~ 482 (636)
+... ....+++.+++||||++++.+..... ...+.|++||+++|..+ .|||||+||++.+..
T Consensus 98 ~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~--------~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~ 169 (186)
T cd02900 98 PLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVI--------TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGV 169 (186)
T ss_pred cCCCCccccccccccCCCEEEEcCcccCCCCCC--------CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCC
Confidence 9211 00013344599999998765531111 23689999999999865 489999999998876
Q ss_pred cCc
Q 006654 483 EDI 485 (636)
Q Consensus 483 ~~~ 485 (636)
+.-
T Consensus 170 p~~ 172 (186)
T cd02900 170 PPE 172 (186)
T ss_pred CHH
Confidence 643
No 16
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.74 E-value=1.1e-17 Score=155.73 Aligned_cols=127 Identities=31% Similarity=0.418 Sum_probs=100.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC--------c-------HHHHHHHHHHHHhCCCeEEEeCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG--------T-------KVQCLTSASSALKKGKSVFLDRC 86 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~--------~-------~~~~~~~~~~~L~~G~~VIID~t 86 (636)
||+|+|+|||||||||+.|++.++ +.+|+.|.++....+ . ...+...+...+..|.++|+|++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~ 78 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNT 78 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccC
Confidence 689999999999999999999988 889999998632111 0 11234667788899999999999
Q ss_pred CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654 87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (636)
Q Consensus 87 n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P 151 (636)
|+..+.|..|.++ +..++.+.+|+|++|.+++.+|+..|..+.. ....++.+++++|++.|++|
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 79 NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD-KRFEVPEEVFDRMLARFEPP 143 (143)
T ss_dssp --SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT-TS----HHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc-ccccCcHHHHHHHHHhhccC
Confidence 9999999999999 9999999999999999999999999998653 23358999999999999887
No 17
>COG4639 Predicted kinase [General function prediction only]
Probab=99.70 E-value=1e-16 Score=150.55 Aligned_cols=136 Identities=27% Similarity=0.351 Sum_probs=110.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC---------CC----cHHHHHHHHHHHHhCCCeEEEeC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SG----TKVQCLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~---------~~----~~~~~~~~~~~~L~~G~~VIID~ 85 (636)
|+.|++|+|+|||||||||++.... ...++.|+++... .+ .++.+...+..+|+.|+..|+|+
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~----~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA 76 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQ----NYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA 76 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCCC----cceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 5689999999999999999987654 3468877776421 12 34455688889999999999999
Q ss_pred CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeC
Q 006654 86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ 164 (636)
Q Consensus 86 tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~ 164 (636)
||..+++|..++++ +.+|+...+|+|++|.++|.+|+..|.+ .+|.+++.+|.+....+...|+|..+....
T Consensus 77 tn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R-------qv~~~VI~r~~r~~~~~l~~e~~~~~~~~~ 149 (168)
T COG4639 77 TNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER-------QVPEEVIPRMLRETIDLLEKEPFRYVWTLS 149 (168)
T ss_pred ccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch-------hCCHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 99999999999999 9999999999999999999999997776 699999999998744444467766654443
Q ss_pred C
Q 006654 165 N 165 (636)
Q Consensus 165 ~ 165 (636)
.
T Consensus 150 s 150 (168)
T COG4639 150 S 150 (168)
T ss_pred C
Confidence 3
No 18
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.69 E-value=4.5e-17 Score=147.21 Aligned_cols=100 Identities=35% Similarity=0.446 Sum_probs=86.7
Q ss_pred EeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCC
Q 006654 367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPN 443 (636)
Q Consensus 367 VNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~ 443 (636)
||+||..|. ++|||+++|++++|++++++|+++. +.+++|++++|+ .+.+++++|||+|||.|.....
T Consensus 1 Vn~~N~~~~-~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~-------~~~l~~~~Iih~v~P~~~~~~~- 71 (118)
T PF01661_consen 1 VNAANCFLS-MGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTP-------GGNLPCKYIIHAVGPTYNSPGE- 71 (118)
T ss_dssp EEEEETTSS-BSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEE-------ETTSSSSEEEEEEEEETTTSTS-
T ss_pred CcCCCCCCC-CCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeec-------CCCccccceEEEecceeccccc-
Confidence 899999999 8999999999999999999998873 669999999998 2456789999999999975422
Q ss_pred CCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCC
Q 006654 444 CLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGC 481 (636)
Q Consensus 444 ~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~ 481 (636)
....+.|++||+++|+.+ .||+||+||.+..-
T Consensus 72 ------~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g 108 (118)
T PF01661_consen 72 ------KNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGG 108 (118)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTS
T ss_pred ------cccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCC
Confidence 257899999999999975 59999999977543
No 19
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.67 E-value=9.1e-16 Score=161.05 Aligned_cols=126 Identities=28% Similarity=0.398 Sum_probs=104.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC---------c--H-----HHHHHHHHHHHhCCCeEE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--K-----VQCLTSASSALKKGKSVF 82 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~---------~--~-----~~~~~~~~~~L~~G~~VI 82 (636)
|+.+|+|+|+|||||||+|+.|++.++ .+.+++.|.++..... . . ......+.+++..|..||
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vI 79 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVI 79 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 578999999999999999999999983 3788999998632111 0 1 112355567778899999
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P 151 (636)
+|++++...+|..|..+ +..++.+.+++|++|.+++.+|+..|..+ .++.+++++|+++++.+
T Consensus 80 id~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~ 143 (300)
T PHA02530 80 ISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER------AVPEDVLRSMFKQMKEY 143 (300)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC------CCCHHHHHHHHHHHHHh
Confidence 99999999999999999 88888888899999999999999999654 58999999999887654
No 20
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=1.1e-16 Score=156.25 Aligned_cols=114 Identities=25% Similarity=0.271 Sum_probs=97.9
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCC
Q 006654 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (636)
Q Consensus 342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~ 421 (636)
.-.+.+|+||++.+. +|||| |. +|||++.+|+++|||++..||..+ ..|++|.+.+|. +
T Consensus 32 ~~~i~lwr~d~~~l~------v~avv------l~-~g~~~~~ai~~aagp~l~~e~~~~-~~c~tG~ak~t~-------~ 90 (200)
T KOG2633|consen 32 NGGISLWRGDGKTLE------VDAVV------LL-GGKGVDEAIHRAAGPELPLECAYL-HGCRTGAAKSTG-------G 90 (200)
T ss_pred ccCeeEeeccccccc------ceeee------ec-cCcchhHHHHHhcCCcchHHHHhh-cCCCCCeeEecC-------C
Confidence 356889999999998 99999 66 899999999999999999999998 449999999998 2
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
..|++++|||+|||.|...+- +...-|..||+|||..| .+||||+|+.+...++.
T Consensus 91 ~~Lpak~vIHtvgP~~~~d~~--------~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~ 150 (200)
T KOG2633|consen 91 YGLPAKRVIHTVGPRWKEDKL--------QECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPW 150 (200)
T ss_pred CCCceeEEEEecCchhhccch--------HHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccH
Confidence 347889999999999976532 33347999999999986 47999999988777764
No 21
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=9.1e-18 Score=194.67 Aligned_cols=127 Identities=19% Similarity=0.088 Sum_probs=108.1
Q ss_pred hcCCeEEEEEE----cccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH---HHHHHHh-----------
Q 006654 339 HINPKKFFTFV----GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAER----------- 400 (636)
Q Consensus 339 ~~~~~~v~v~~----GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l---~~e~~~~----------- 400 (636)
..+|.++.+++ ||||.+. +|+|||+||..|. +||||++||+++||+++ +++|+++
T Consensus 471 ~~~~~~~~~~~~~~~~dit~~~------~d~ivnaan~~ll-~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 543 (725)
T PRK13341 471 GQEGERLAILRDRLWSDITWQR------HDRVLNLANRSLL-WALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLE 543 (725)
T ss_pred hhcccHHHHHHHHHhccccccc------cceeEEccCccch-hhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhh
Confidence 34678899999 9999997 9999999999999 99999999999999999 8888762
Q ss_pred ------------------------cCCCCCCcEEEec---------CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 006654 401 ------------------------AKSLYPGNSVIVP---------LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDG 447 (636)
Q Consensus 401 ------------------------~~~~~~G~avvT~---------l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~ 447 (636)
.|+|++|++++|. |+ ..++|.|++|||+|||.|....+
T Consensus 544 rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~----~~g~L~~~~vIh~vGp~~~~~~~----- 614 (725)
T PRK13341 544 RPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLT----PAGKLKLLYSIPAVGPAWALLSE----- 614 (725)
T ss_pred CccccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcC----CCCeeEEEEeccccChHhhhcCc-----
Confidence 4889999999991 22 14678999999999999977532
Q ss_pred CccchHHHHHHHHHHHHHhH-----H----------HhhccccCCCCCCCcCcc
Q 006654 448 DYVKGCEILRKAYTSLFEGF-----L----------SIVRSQEKLSKGCNEDIR 486 (636)
Q Consensus 448 ~~~~~~~~L~~ay~~~L~~a-----~----------siaf~~~~~~~~~~~~~~ 486 (636)
.+.|.+||+++|..| . |||||+|+.+.+-.|.-+
T Consensus 615 -----~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~ 663 (725)
T PRK13341 615 -----DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEEL 663 (725)
T ss_pred -----cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCccc
Confidence 479999999999974 5 999999998877766544
No 22
>PRK06762 hypothetical protein; Provisional
Probab=99.62 E-value=1.2e-14 Score=139.49 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=110.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC--------CcHHHHHHHHHHHHhCCCeEEEeCCCCCH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GTKVQCLTSASSALKKGKSVFLDRCNLER 90 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~--------~~~~~~~~~~~~~L~~G~~VIID~tn~~~ 90 (636)
||.+|+|+|+|||||||+|+.|++.++..+.+++.|.++.... .....+...+...+..|..||+|+++...
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~ 80 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD 80 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence 6899999999999999999999999865577889999874211 12233345555667889999999987777
Q ss_pred HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCChhHH
Q 006654 91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV 169 (636)
Q Consensus 91 ~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~~~v 169 (636)
..|..+..+ ...+.++..|+|++|.++|.+|+..|... ...+++.+++++..++.+. .++.+ +.++...+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~-----~~~~~~~l~~~~~~~~~~~---~~~~~-~~~~~~~~ 151 (166)
T PRK06762 81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS-----HEFGEDDMRRWWNPHDTLG---VIGET-IFTDNLSL 151 (166)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc-----ccCCHHHHHHHHhhcCCcC---CCCeE-EecCCCCH
Confidence 778778778 77787888999999999999999999762 1467888999988876653 23444 33343455
Q ss_pred HHHHH
Q 006654 170 QAALD 174 (636)
Q Consensus 170 daiv~ 174 (636)
++++.
T Consensus 152 ~~v~~ 156 (166)
T PRK06762 152 KDIFD 156 (166)
T ss_pred HHHHH
Confidence 55554
No 23
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.59 E-value=9.8e-15 Score=142.79 Aligned_cols=133 Identities=21% Similarity=0.270 Sum_probs=102.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC-C--CeEEeehhhhc---C-CCCC----cHHH-----HHHHHHHHHhCCCeEEEe
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA-R--PWARICQDTIN---K-GKSG----TKVQ-----CLTSASSALKKGKSVFLD 84 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~-~--~~~~Is~D~ir---~-~~~~----~~~~-----~~~~~~~~L~~G~~VIID 84 (636)
.||++.|+|||||||||+.|++.+. . ...++..|..+ . +..+ .... ....+..+++ ..-||+|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvD 80 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVD 80 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEe
Confidence 4789999999999999999998875 1 23444544332 1 1111 1111 1133334444 4679999
Q ss_pred CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEE
Q 006654 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT 161 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Vi 161 (636)
++|+....|..+... ++..+.+++|++.+|.++|.+|+..|+. +.|++++++++.+|++|.....|+...
T Consensus 81 dtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-------pip~Evl~qly~RfEePn~~~rWDspl 151 (261)
T COG4088 81 DTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-------PIPEEVLRQLYDRFEEPNPDRRWDSPL 151 (261)
T ss_pred cccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-------CCCHHHHHHHHHhhcCCCCCccccCce
Confidence 999999999999999 9999999999999999999999987766 799999999999999999877788644
No 24
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.58 E-value=1.9e-14 Score=147.73 Aligned_cols=130 Identities=24% Similarity=0.332 Sum_probs=104.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC---CCc-----HHHHHHHHHHHHhCCCeEEEeCCCCCH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---SGT-----KVQCLTSASSALKKGKSVFLDRCNLER 90 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~---~~~-----~~~~~~~~~~~L~~G~~VIID~tn~~~ 90 (636)
||+|+|+|||||||+|++|++.+. ..+.+++.|.++... ... .......+.+++..|..||+|++|+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~ 80 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN 80 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence 589999999999999999998763 456788888875432 111 112235677788889999999999999
Q ss_pred HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCcc
Q 006654 91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS 158 (636)
Q Consensus 91 ~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd 158 (636)
..|..+..+ +..+..+.+|++++|.++|.+|+..|.. .+++++++++..+|++|.....|+
T Consensus 81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-------~~~~~~i~~l~~r~e~p~~~~~wd 142 (249)
T TIGR03574 81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-------KIPNEVIKDMYEKFDEPGTKYSWD 142 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-------CCCHHHHHHHHHhhCCCCCCCCcc
Confidence 999999888 8888888999999999999999998854 367889999999999998654443
No 25
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=99.57 E-value=5e-16 Score=152.23 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=100.2
Q ss_pred HHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcC---CCCCCCCCCcccCCCCCCcccccccccccCcce
Q 006654 168 DVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEI 244 (636)
Q Consensus 168 ~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (636)
++|+++++.+..- ..+|+.+. +++.++|.+|++-.++.. ..-.+|. ++ .|.+.++.|.++.|.
T Consensus 33 ~vDaIVNaaN~~L----~~ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~-~~--------iT~a~~Lp~k~VIHt 98 (186)
T cd02904 33 DVEGIVHPTNADI----DLKGEVGN-ALEKKGGKEFVEAVKELRKSNGPLEIAG-AA--------VSQAHGLPAKFVIHC 98 (186)
T ss_pred eccEEEcCCcccc----CCCCcHhH-HHHHHcCHHHHHHHHHHHHhcCCCCCCC-EE--------EccCCCCCCCEEEEe
Confidence 5777887643221 22567777 999999999998765431 1223443 11 255677888888888
Q ss_pred ecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 006654 245 TSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL 311 (636)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~ 311 (636)
+.|.|.. ...+++|..||.+||.+|++++++|||||+||||+||||.++||+|++++|++|+.++
T Consensus 99 VgP~~~~--~~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 99 HSPQWGS--DKCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred CCCCCCC--CchHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8888864 3446789999999999999999999999999999999999999999999999999985
No 26
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.57 E-value=2.1e-14 Score=149.23 Aligned_cols=134 Identities=23% Similarity=0.325 Sum_probs=93.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC--CCC-------cHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG--KSG-------TKVQCLTSASSALKKGKSVFLDRCNL 88 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~--~~~-------~~~~~~~~~~~~L~~G~~VIID~tn~ 88 (636)
.||+|+|+|||||||+|++|.+.+. ..+.+++.|.+.-. ... .+..+...+.+.|.....||+|+.|+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNY 81 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCch
Confidence 4799999999999999999987643 34667787666511 111 12345578888898888999999999
Q ss_pred CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccE
Q 006654 89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR 159 (636)
Q Consensus 89 ~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~ 159 (636)
.+..|.++..+ +..+..+++|++++|.+.|++|+.+|.... .+++++++.|..+||+|.....|+.
T Consensus 82 iKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-----~~~~e~i~~m~~RfE~P~~~nrWD~ 148 (270)
T PF08433_consen 82 IKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-----RYPEETIDDMIQRFEEPDPKNRWDS 148 (270)
T ss_dssp SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S-HHHHHHHHHH---TTSS-GGGS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-----CCCHHHHHHHHHHhcCCCCCCCccC
Confidence 99999999999 999999999999999999999999998732 4899999999999999998666774
No 27
>PRK14527 adenylate kinase; Provisional
Probab=99.50 E-value=5.7e-13 Score=131.31 Aligned_cols=128 Identities=23% Similarity=0.275 Sum_probs=92.4
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK 77 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~ 77 (636)
.+++.+|+++|+|||||||+|+.|+++++ +.+++.|++ +.. ...+...+...+...+..
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~--~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~ 80 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELG--LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAG 80 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhC--CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Confidence 35788999999999999999999999998 667776444 321 111233345666666654
Q ss_pred --CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654 78 --GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 78 --G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f 148 (636)
+.+||+|+++.+..++..|..+ ...+..+ .+++|++|.+++.+|+..|....+ +.++ .++++++-.+.|
T Consensus 81 ~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~dd-~~~~~~~R~~~y 153 (191)
T PRK14527 81 MEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEG-RSDD-NEETVRRRQQVY 153 (191)
T ss_pred CCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCC-CCCC-CHHHHHHHHHHH
Confidence 4579999999999999888877 6666666 578999999999999999986443 2333 344444444333
No 28
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.49 E-value=5.8e-13 Score=125.61 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=95.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CCCc---HHH----HHHHHHHHH-hCCCeEEEe
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQ----CLTSASSAL-KKGKSVFLD 84 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~~~---~~~----~~~~~~~~L-~~G~~VIID 84 (636)
||+|+|+|||||||+|+.|++.++ +.+++.|.++.. .... ... +...+...+ ..|.++|+|
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid 78 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG--APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVA 78 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC--CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 589999999999999999999987 667888888752 1000 111 112223333 478899999
Q ss_pred CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCC
Q 006654 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG 156 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Eg 156 (636)
.++.....|..+..+. .+..+.+|++.+|.+++.+|+..|..+ ..+.+.+..+...|+.|...++
T Consensus 79 ~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~~~------~~~~~~~~~~~~~~~~p~~~~~ 143 (150)
T cd02021 79 CSALKRIYRDILRGGA-ANPRVRFVHLDGPREVLAERLAARKGH------FMPADLLDSQFETLEPPGEDEE 143 (150)
T ss_pred eccccHHHHHHHHhcC-CCCCEEEEEEECCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC
Confidence 9998888887775554 466788999999999999999999764 3558889999999999986554
No 29
>PLN02674 adenylate kinase
Probab=99.48 E-value=4e-13 Score=137.43 Aligned_cols=175 Identities=15% Similarity=0.222 Sum_probs=118.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK--- 77 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~--- 77 (636)
+..|+|+|+|||||||+|+.|++.++ +.||+.+++ |.. ...+...+...+.++|..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 45688999999999999999999998 888987444 321 122334445666777744
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 006654 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE 155 (636)
Q Consensus 78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~E 155 (636)
+++||+|+++++..|.+.|..+ ...+..+ .+++|++|.+++.+|+..|..++.. .+.++..|.+|. .+
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~---------g~~yn~~~~pp~-~~ 178 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSS---------GRTYHTKFAPPK-VP 178 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcccccccc---------CCccccccCCCc-cc
Confidence 3579999999999999999877 6656555 6889999999999999999765432 233444566665 34
Q ss_pred CccEE----EEeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHH
Q 006654 156 GFSRI----TLCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFL 207 (636)
Q Consensus 156 gfd~V----iii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l 207 (636)
+.+++ .+.+.++..+.+.++ |+ ...|. + ..+ +...++ .....|+..|.++|
T Consensus 179 ~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~-~~~~eV~~~i~~~l 243 (244)
T PLN02674 179 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAE-KPPKEVTAEVQKAL 243 (244)
T ss_pred CcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHh
Confidence 44332 234556666666655 32 33333 1 112 444555 66777778887766
No 30
>PRK14531 adenylate kinase; Provisional
Probab=99.48 E-value=1.2e-12 Score=128.24 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=80.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCCC------------------CCcHHHHHHHHHHHHh--C
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKGK------------------SGTKVQCLTSASSALK--K 77 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~~------------------~~~~~~~~~~~~~~L~--~ 77 (636)
|+..|+++|+|||||||+|+.|++.++ +.+|+. |.++... ..+...+...+...|. .
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g--~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~ 78 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHG--LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN 78 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc
Confidence 345689999999999999999999998 677887 5555321 1122223344454554 3
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccc
Q 006654 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+.++|||+++.+..++..|..+ ...+..+ .+++|++|.+++.+|+..|.+
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 5679999999999999998877 6555544 588999999999999999964
No 31
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.45 E-value=1e-12 Score=125.76 Aligned_cols=139 Identities=18% Similarity=0.201 Sum_probs=99.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CC-C-----cH-HHHHHHHHHHHhCCCeEEEeCC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KS-G-----TK-VQCLTSASSALKKGKSVFLDRC 86 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~-~-----~~-~~~~~~~~~~L~~G~~VIID~t 86 (636)
|+|+|+|||||||+|+.|++.++ +.+++.|.+... .. . .+ ..+...+...+..|..+|+|.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t 78 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCS 78 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 57899999999999999999988 666888886321 10 0 11 1233556667777887899999
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCCh
Q 006654 87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (636)
Q Consensus 87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~ 166 (636)
++....|..+ +..+..+.+++|++|.+++.+|+..|..+ ..+.+.+++++..++.|...+. ++.+++..
T Consensus 79 ~~~~~~r~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~e~--~~~~id~~ 147 (163)
T TIGR01313 79 ALKRHYRDIL---REAEPNLHFIYLSGDKDVILERMKARKGH------FMKADMLESQFAALEEPLADET--DVLRVDID 147 (163)
T ss_pred ccHHHHHHHH---HhcCCCEEEEEEeCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCCCCCCCC--ceEEEECC
Confidence 8877777655 45566778899999999999999999753 3456778888888888765542 34556655
Q ss_pred hHHHHHHH
Q 006654 167 NDVQAALD 174 (636)
Q Consensus 167 ~~vdaiv~ 174 (636)
...+.+.+
T Consensus 148 ~~~~~~~~ 155 (163)
T TIGR01313 148 QPLEGVEE 155 (163)
T ss_pred CCHHHHHH
Confidence 45554444
No 32
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.45 E-value=5.5e-13 Score=125.12 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=90.7
Q ss_pred EEEEEccccee-cccCcccccEEEeCCCCCCcCCCChhhHHHHHh--hcH-HHHHHHHHhcCCCCCCcEEEecCCCCCCC
Q 006654 345 FFTFVGDITRL-YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSA--AGP-ALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (636)
Q Consensus 345 v~v~~GDIt~~-~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~a--aG~-~l~~e~~~~~~~~~~G~avvT~l~~~~~~ 420 (636)
|.+++|||++. . +|+|||++|..+. +|+|++.+|.++ +++ ++++.|++. .+.+|++++++.
T Consensus 2 i~~v~GDi~~~~~------~d~Iv~~~N~~~~-mG~Gia~~i~~~~p~~~~~~~~~~~~~--~~~~G~~~~~~~------ 66 (140)
T cd02901 2 ITYVKGDLLHAPE------AAALAHAVNCDGV-MGKGIALQFKEKFPEFVEEYRAACKKK--ELLLGGVAVLER------ 66 (140)
T ss_pred eEEEcCccccCCC------CCEEEEEEcCCCc-cChHHHHHHHHHCcHHHHHHHHHHHhc--CCCCCcEEEEec------
Confidence 67899999999 6 9999999999999 999999999997 443 777777764 466888877662
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHH-----HhhccccCCCCC
Q 006654 421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLSKG 480 (636)
Q Consensus 421 ~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~~~~~ 480 (636)
.+.+++++|+|+++|.|....+ ..+.|++|++++++.+. |||||.||.+-+
T Consensus 67 ~~~~~~~~I~~~~t~~~~~~~~---------~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~ 122 (140)
T cd02901 67 GSSLVSRYIYNLPTKVHYGPKS---------RYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLG 122 (140)
T ss_pred CCCCCceEEEEeeccCCCCCCC---------cHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCC
Confidence 2335679999999998865322 36899999999999874 999999997643
No 33
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.43 E-value=3.4e-12 Score=123.31 Aligned_cols=153 Identities=18% Similarity=0.332 Sum_probs=106.1
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCCC-------------------CCcHHHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKGK-------------------SGTKVQCLTSASSAL 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~~-------------------~~~~~~~~~~~~~~L 75 (636)
...++.+|++.|.|||||.|++.+++++++ |.|++. |.+|++. ..+.+.+..++.++|
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am 81 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAM 81 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHH
Confidence 456788999999999999999999999999 999997 5555321 112334456666666
Q ss_pred hCC---CeEEEeCCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh--
Q 006654 76 KKG---KSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-- 148 (636)
Q Consensus 76 ~~G---~~VIID~tn~~~~~R~~l~~l-~-~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f-- 148 (636)
.+- ..++||+++++..|+..|... . .... +++|+++.++|++|+..|...+. +.++..+.+-.|+.-..
T Consensus 82 ~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~f---vl~fdc~ee~~l~Rll~R~q~~~-R~DDn~esikkR~et~~~~ 157 (195)
T KOG3079|consen 82 RSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDF---VLFFDCPEETMLKRLLHRGQSNS-RSDDNEESIKKRLETYNKS 157 (195)
T ss_pred HhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHhhcccCC-CCCCchHHHHHHHHHHHHc
Confidence 443 239999999999999999877 5 3443 88999999999999999988644 45555544444433221
Q ss_pred cCCCc--cCCccEEEEeCChhHHHHHHH
Q 006654 149 ELPKL--SEGFSRITLCQNENDVQAALD 174 (636)
Q Consensus 149 e~P~~--~Egfd~Viii~~~~~vdaiv~ 174 (636)
..|-. ++.-..+.-++.+.+++++..
T Consensus 158 t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~ 185 (195)
T KOG3079|consen 158 TLPVIEYYEKKGKLLKINAERSVDDVFE 185 (195)
T ss_pred chHHHHHHHccCcEEEecCCCCHHHHHH
Confidence 22222 444345555665555655544
No 34
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.43 E-value=2.4e-12 Score=125.34 Aligned_cols=105 Identities=22% Similarity=0.358 Sum_probs=78.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC--CCe
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK--GKS 80 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~--G~~ 80 (636)
+|+++|+|||||||+|+.|+++++ +.+|+. |.++.. ...+.......+.+++.. +++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 78 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKK 78 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCc
Confidence 489999999999999999999998 788987 455422 111222233445555543 568
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
||||+++.+..++..|..+ ......-.+++|++|.+++.+|+..|...
T Consensus 79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~ 127 (183)
T TIGR01359 79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS 127 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc
Confidence 9999999999999999877 43222224889999999999999999764
No 35
>PRK14532 adenylate kinase; Provisional
Probab=99.43 E-value=2.7e-12 Score=125.83 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=87.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh-hhcCC------------------CCCcHHHHHHHHHHHH---hCCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD-TINKG------------------KSGTKVQCLTSASSAL---KKGK 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D-~ir~~------------------~~~~~~~~~~~~~~~L---~~G~ 79 (636)
.|+|+|+|||||||+|+.|++.++ +.+|+.| .+++. ...+...+...+.+.+ ..+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG--MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAG 79 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence 378999999999999999999998 7889884 44421 1112222334444444 3457
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~ 147 (636)
++|+|+++.+..|+..+.++ ...+..+ .+++|++|.+++.+|+..|..... +++...+.+.+++...
T Consensus 80 g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~-r~dd~~~~~~~Rl~~~ 148 (188)
T PRK14532 80 GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQG-RPDDNPEVFVTRLDAY 148 (188)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCC-CCCCCHHHHHHHHHHH
Confidence 89999999999999998877 6666555 689999999999999999964322 3444555555555443
No 36
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.38 E-value=6.1e-12 Score=122.27 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=80.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------------CC------------cHHHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------------SG------------TKVQCLTSASSAL 75 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------------~~------------~~~~~~~~~~~~L 75 (636)
.+|+|+|+|||||||+|+.|++.++.++.+++.|.++... .+ ........+.+.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l 82 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMA 82 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999987667888888764210 00 0112336677888
Q ss_pred hCCCeEEEeCCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 KKGKSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 ~~G~~VIID~tn~-~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..|..||+|.++. ....|..+..+ .+.++..|++.+|.++|.+|+.+|..
T Consensus 83 ~~G~~VIvD~~~~~~~~~r~~~~~~--~~~~~~~v~l~~~~~~l~~R~~~R~~ 133 (175)
T cd00227 83 RAGANVIADDVFLGRAALQDCWRSF--VGLDVLWVGVRCPGEVAEGRETARGD 133 (175)
T ss_pred hCCCcEEEeeeccCCHHHHHHHHHh--cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence 9999999999877 55666656555 23567889999999999999999975
No 37
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.37 E-value=1.8e-11 Score=122.46 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=79.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC----CC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK----GK 79 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~----G~ 79 (636)
|+++|+|||||||+|+.|++.++ +.+|+. |.++.. ...+...+...+...|.. ++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG--LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 78999999999999999999998 778887 444421 112333445666677755 56
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
+||||+++.+..++..|... .. ....+|+|++|.+++.+|+..|...+
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~~~ 128 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRICP 128 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCccC
Confidence 89999999999999888776 42 12258999999999999999997643
No 38
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=99.36 E-value=2.4e-13 Score=128.05 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=88.2
Q ss_pred CCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccc-hhhcccCChhhhhhhcccC
Q 006654 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGS 272 (636)
Q Consensus 194 ~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~ 272 (636)
+++.++|.+|+.-+++.+. -.+|.. . .|.++++.|.++-|.+.|.|.... .+.++.|..||.+||.+|.
T Consensus 35 aI~~aaG~~l~~e~~~~~~-~~~G~~-~--------~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~ 104 (140)
T cd02905 35 KIFARAGSELREEIQTLGG-CRTGEA-K--------LTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAK 104 (140)
T ss_pred HHHHHhCHHHHHHHHHhCC-CCCCcE-E--------EecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 8899999999988887765 345531 1 356778888888888888887532 2346788999999999999
Q ss_pred CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 006654 273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV 308 (636)
Q Consensus 273 ~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~ 308 (636)
+++++|||||+||||+||||.++||+|+++++++|+
T Consensus 105 ~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 105 ELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred HcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999985
No 39
>PRK14530 adenylate kinase; Provisional
Probab=99.36 E-value=4.4e-12 Score=127.35 Aligned_cols=173 Identities=13% Similarity=0.154 Sum_probs=108.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCCC------CC----------------cHHHHHHHHHHHHhCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGK------SG----------------TKVQCLTSASSALKKG 78 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~~------~~----------------~~~~~~~~~~~~L~~G 78 (636)
.|+++|+|||||||+|+.|++.++ +.+|+.+++ +... .. ........+...+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~ 82 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA 82 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence 588999999999999999999998 677876444 3211 01 1122334455566667
Q ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCcc
Q 006654 79 KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS 158 (636)
Q Consensus 79 ~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd 158 (636)
.++|+|+++.+..++..+..+...+ .+|+|++|.+++.+|+..|...+.. ...++..+.+|...+..+
T Consensus 83 ~~~IldG~pr~~~q~~~l~~~~~~d---~vI~Ld~~~~~l~~Rl~~R~~~~~~---------g~~~~~~~~~p~~~~~~~ 150 (215)
T PRK14530 83 DGFVLDGYPRNLEQAEYLESITDLD---VVLYLDVSEEELVDRLTGRRVCPDC---------GANYHVEFNQPEEEGVCD 150 (215)
T ss_pred CCEEEcCCCCCHHHHHHHHHhcCCC---EEEEEeCCHHHHHHHHhCCCcCccc---------CCccccCCCCCcccccCc
Confidence 7899999999998887775542222 3889999999999999999764321 223444455665332212
Q ss_pred E---EEEeCChhHHHHHHHH---hc-cCCCC----cccC--CCccCCCCCchhhHHHHHHHHhh
Q 006654 159 R---ITLCQNENDVQAALDT---YS-GLGPL----DTLP--HGSFGQKNPDAKIQLGIMKFLKK 209 (636)
Q Consensus 159 ~---Viii~~~~~vdaiv~~---~~-~Lgpf----d~~p--hgc~~~~~~~~~v~~~i~k~l~~ 209 (636)
. -...+.++..+.+.++ |+ ...|. ...+ +...++ .+...|+..|..+|.+
T Consensus 151 ~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~-~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 151 ECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGE-QTPDEVWADIQDAIDD 213 (215)
T ss_pred ccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECC-CCHHHHHHHHHHHHhc
Confidence 0 1133444445555544 32 22222 1112 334455 6778888888888864
No 40
>COG0645 Predicted kinase [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=117.88 Aligned_cols=127 Identities=25% Similarity=0.238 Sum_probs=107.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------------------cHHHHHHHHHHHHhCCCe
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------------TKVQCLTSASSALKKGKS 80 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------------------~~~~~~~~~~~~L~~G~~ 80 (636)
++++++.|.|||||||+|+.|++.++ ..+|.+|.++...++ .+..+...+...|..|.+
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lg--A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~ 78 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLG--AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHS 78 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcC--ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 36899999999999999999999998 788999999754333 123456788899999999
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK 152 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~ 152 (636)
||+|.++..+.+|..+..+ +..+..+..|.+..|.+++..|+..|...+ .+-.-.+++.+...+++..
T Consensus 79 VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~----sDA~~~il~~q~~~~~~~~ 147 (170)
T COG0645 79 VVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDA----SDATFDILRVQLAEDEPWT 147 (170)
T ss_pred EEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCc----ccchHHHHHHHHhhhCCcc
Confidence 9999999999999999999 999999999999999999999999998722 1445677888888887655
No 41
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.34 E-value=3.8e-11 Score=120.63 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=80.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh-hhcCC------------------CCCcHHHHHHHHHHHHhC---CC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD-TINKG------------------KSGTKVQCLTSASSALKK---GK 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D-~ir~~------------------~~~~~~~~~~~~~~~L~~---G~ 79 (636)
.|++.|+|||||||+|+.|++.++ +.+++.+ .++.. ...+.......+.+.+.. +.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccC
Confidence 488999999999999999999998 7788874 44321 111223344556666654 34
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
+||||+++.+..++..|.+. ...+..+ .+|+|++|.+++.+|+..|...+
T Consensus 80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~ 131 (215)
T PRK00279 80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICP 131 (215)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccC
Confidence 79999999999998888766 5555444 68999999999999999997654
No 42
>PLN02459 probable adenylate kinase
Probab=99.32 E-value=6.6e-11 Score=121.98 Aligned_cols=184 Identities=14% Similarity=0.096 Sum_probs=112.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcC------------------CCCCcHHHHHHHHHHHHhC---
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK--- 77 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~------------------~~~~~~~~~~~~~~~~L~~--- 77 (636)
+..|+++|+|||||||+|+.|++.++ +.||+. |.+|. +...+...+...+.+.|..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~ 106 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE 106 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence 34578899999999999999999998 788886 44432 2222445556777777754
Q ss_pred --CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHH--H---HhhhcC
Q 006654 78 --GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR--M---LQKKEL 150 (636)
Q Consensus 78 --G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~r--m---~~~fe~ 150 (636)
.++||||+++++..|...|..+... -.+|+|++|.+++.+|+..|...+..... .....+.. + -..+.+
T Consensus 107 ~~~~g~iLDGFPRt~~Qa~~Le~~~~i---d~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~-Yn~~~~~~~~~~~~~~~~~~ 182 (261)
T PLN02459 107 EGESGFILDGFPRTVRQAEILEGVTDI---DLVVNLKLREEVLVEKCLGRRICSECGKN-FNVADIDLKGEDGRPGIVMP 182 (261)
T ss_pred cCCceEEEeCCCCCHHHHHHHHhcCCC---CEEEEEECCHHHHHHHhhccccccccCcc-ccccccccccccccccccCC
Confidence 2579999999999999988655211 24889999999999999999765432000 00000000 0 000223
Q ss_pred CCcc-CCccEEEEeCChhHHHHHHHH---hc-cCCCC----cccC--CCccCCCCCchhhHHHHHHHHhhc
Q 006654 151 PKLS-EGFSRITLCQNENDVQAALDT---YS-GLGPL----DTLP--HGSFGQKNPDAKIQLGIMKFLKKV 210 (636)
Q Consensus 151 P~~~-Egfd~Viii~~~~~vdaiv~~---~~-~Lgpf----d~~p--hgc~~~~~~~~~v~~~i~k~l~~~ 210 (636)
|... +....-.+.+.++..+.+.++ |+ ...|. ...+ |...++ .....|+.+|.+.|+.+
T Consensus 183 p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~-~~~~eV~~~i~~~l~~~ 252 (261)
T PLN02459 183 PLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELP-GGIPETWPRLLQALNLD 252 (261)
T ss_pred CCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCC-CCHHHHHHHHHHHhchh
Confidence 3211 111111234555566666554 32 22333 1222 445555 67788999999998654
No 43
>PRK14528 adenylate kinase; Provisional
Probab=99.31 E-value=7.6e-11 Score=116.09 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=85.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---CC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK---GK 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~---G~ 79 (636)
.|++.|+|||||||+|+.|++.++ +.+++.+++ +.. ...+.......+.+.+.+ ..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~--~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~ 80 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS--IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN 80 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccC
Confidence 478999999999999999999998 667776555 321 011122223445555543 35
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~ 145 (636)
.+|||+++.+..+...+..+ ...+..+ .+|+|++|.+++.+|+..|....+ +.++.++.+.+|+.
T Consensus 81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~g-r~dd~~e~i~~Rl~ 147 (186)
T PRK14528 81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEG-RADDNEATIKNRLD 147 (186)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccC-CCCCCHHHHHHHHH
Confidence 69999999999999988777 5444444 688999999999999999976544 34445555555543
No 44
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.29 E-value=2.6e-11 Score=129.55 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=101.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcC-----CCCC------------------------------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINK-----GKSG------------------------------ 62 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~-----~~~~------------------------------ 62 (636)
+.+|+|+|||||||+++.|+..+. ....+++.|++.. ...+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999886543 3466788877641 1110
Q ss_pred ----------cHHHH---------------------HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEE
Q 006654 63 ----------TKVQC---------------------LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVV 110 (636)
Q Consensus 63 ----------~~~~~---------------------~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~ 110 (636)
.+... ...+...+..+..+|+|++|+.+..|..+..+ +..+..+.+||
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ 160 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF 160 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 01000 01122333445569999999999999999999 99999999999
Q ss_pred EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc-cCCccEE
Q 006654 111 LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL-SEGFSRI 160 (636)
Q Consensus 111 Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~-~Egfd~V 160 (636)
+++|.++|.+|+.+|.. .+++++++.|..+||.|.. ...|+.-
T Consensus 161 ld~ple~~l~RN~~R~~-------~v~devie~m~~r~E~P~~~~nrWd~p 204 (340)
T TIGR03575 161 LDCPVESCLLRNKQRPV-------PLPDETIQLMGRKIEKPNPEKNAWEHN 204 (340)
T ss_pred EeCCHHHHHHHHhcCCC-------CCCHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 99999999999999964 6899999999999999996 6777754
No 45
>PRK14529 adenylate kinase; Provisional
Probab=99.29 E-value=3.2e-11 Score=122.07 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=81.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCCC------------------CCcHHHHHHHHHHHHhC--CCeE
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKGK------------------SGTKVQCLTSASSALKK--GKSV 81 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~~------------------~~~~~~~~~~~~~~L~~--G~~V 81 (636)
|+|.|+|||||||+|+.|++.++ +.+++. |.+++.. ..+.+.+...+.+.|.. .+++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 78899999999999999999998 666764 4444321 11233445666677744 4679
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654 82 FLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
|||+++++..|.+.|..+ ...+..+ .+++|++|++++.+|+..|..++
T Consensus 81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~ 130 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCK 130 (223)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcccc
Confidence 999999999999998776 5555444 68999999999999999997654
No 46
>PLN02200 adenylate kinase family protein
Probab=99.27 E-value=8.3e-11 Score=120.07 Aligned_cols=105 Identities=19% Similarity=0.403 Sum_probs=78.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC--
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK-- 77 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~-- 77 (636)
.|.+|+++|+|||||||+|+.|++.++ +.||+. |.++.. ...+.+.....+.+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g--~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG--FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999998 778887 555421 111223333445555542
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+.++|||+++.+..++..|..+ ... .-.+++|++|.+++.+|+..|..
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~~~~--pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERIIGAE--PNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHhccC--CCEEEEEECCHHHHHHHHHcCcC
Confidence 4579999999999999888766 321 12478999999999999999864
No 47
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.27 E-value=9.1e-11 Score=114.88 Aligned_cols=104 Identities=23% Similarity=0.304 Sum_probs=80.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---CCe
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK---GKS 80 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~---G~~ 80 (636)
|+++|+|||||||+|+.|++.++ +.+++.|++ +.. .......+...+...|.. ++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence 78999999999999999999998 778887554 321 111223344566666654 578
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
+|+|+++.+..++..|... ...+....+|+|++|.+++.+|+..|...
T Consensus 80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 9999999999999888777 54445557899999999999999999864
No 48
>PRK13808 adenylate kinase; Provisional
Probab=99.27 E-value=6.9e-11 Score=125.78 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=78.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC---CCe
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK---GKS 80 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~---G~~ 80 (636)
|+|+|+|||||||+|+.|++.++ +.||+. |.|+.. ...+.+.+..++.+.|.. ..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg--l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG--IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 78899999999999999999998 678886 444421 112334444566666643 357
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~ 126 (636)
||||+++.+..|.+.|..+ ...+..+ .+|+|++|.+++++|+..|.
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~ 128 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRV 128 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence 9999999999999988777 5555544 68899999999999999884
No 49
>PRK02496 adk adenylate kinase; Provisional
Probab=99.26 E-value=8.1e-11 Score=115.06 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=81.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~---G~ 79 (636)
.|++.|+|||||||+|+.|++.++ +.+++.+++ +. +...........+.+.+.. ..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH--IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence 478899999999999999999998 667876443 22 1111223333555555542 35
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f 148 (636)
+||||+++.+..+...+..+ ...+. ...+++|++|.+++.+|+..|.+. ...++.+++....|
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------dd~~~~~~~r~~~y 145 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK------DDTEEVIRRRLEVY 145 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC------CCCHHHHHHHHHHH
Confidence 69999999999888777665 44433 236789999999999999999652 22445555544444
No 50
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.3e-10 Score=109.25 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=103.0
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------C------CCCcHH-HHHHHHHHHHhCCCe
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------G------KSGTKV-QCLTSASSALKKGKS 80 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~------~~~~~~-~~~~~~~~~L~~G~~ 80 (636)
++-+.+|+++|++||||||+++.|.++++ +..++.|++.. + .+-.|- .+...++.++..|..
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~--~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~ 86 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELG--LKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQG 86 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhC--CcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCe
Confidence 34566899999999999999999999999 55589888842 1 111222 233566677778999
Q ss_pred EEEeCCCCCHHHHHHHHHh-C-----C-CCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc
Q 006654 81 VFLDRCNLEREQRTDFVKL-G-----G-PEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL 153 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~-----~-~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~ 153 (636)
||+-+..+.+..|.-+..- + . ...++++|++..+.+++.+|+..|..| -.|.+.+.+|.+.+|+|..
T Consensus 87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH------FMp~~lleSQf~~LE~p~~ 160 (191)
T KOG3354|consen 87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH------FMPADLLESQFATLEAPDA 160 (191)
T ss_pred EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc------cCCHHHHHHHHHhccCCCC
Confidence 9999988888888766552 2 1 224678999999999999999999997 7899999999999999997
Q ss_pred cC
Q 006654 154 SE 155 (636)
Q Consensus 154 ~E 155 (636)
.|
T Consensus 161 ~e 162 (191)
T KOG3354|consen 161 DE 162 (191)
T ss_pred Cc
Confidence 55
No 51
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.26 E-value=1.5e-12 Score=123.66 Aligned_cols=108 Identities=12% Similarity=0.015 Sum_probs=87.7
Q ss_pred CccCCCCCchhhHHHHHHHHhh----cCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccc--hhhcccCC
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKK----VDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTEN 261 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 261 (636)
|+.+. .++.++|.+|+..+++ .+...++|.- . .|...++.|.++-|.+.+.|.... ...++.|.
T Consensus 34 ggv~~-aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a-~--------~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~ 103 (147)
T cd02906 34 RCIDN-IIHTFAGPQLRQACFELMTKQGREEPTGQA-K--------ITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLA 103 (147)
T ss_pred CcHHH-HHHHHhCHHHHHHHHHHHHhcCCCCCCCeE-E--------EEeCCCCCCCEEEEECCCcccCCCCCccHHHHHH
Confidence 56767 8999999999976544 3444566641 1 355677888899998888876532 34577899
Q ss_pred hhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654 262 PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (636)
Q Consensus 262 ~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~ 305 (636)
.||.+||.++.+++++|||||+||||+||||.++||+|++++|+
T Consensus 104 ~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 104 KCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999984
No 52
>PRK14526 adenylate kinase; Provisional
Probab=99.25 E-value=2.2e-10 Score=115.18 Aligned_cols=171 Identities=13% Similarity=0.183 Sum_probs=110.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---CCe
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK---GKS 80 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~---G~~ 80 (636)
|+|+|+|||||||+|+.|++.++ +.+++.+.+ ++. ...+.......+.+.|.. ..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~--~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN--YYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence 77899999999999999999988 667875444 322 111222334556666643 457
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccE
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR 159 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~ 159 (636)
||||+++++..|...|... .. ..+++|++|.+++.+|+..|...+.. ...++..|.+|.. ++..+
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~~~----~~vi~l~~~~~~~~~Rl~~R~~~~~~---------g~~y~~~~~pp~~-~~~~~ 146 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFLPN----IKIINFLIDEELLIKRLSGRRICKSC---------NNIFNIYTLPTKE-KGICD 146 (211)
T ss_pred EEEECCCCCHHHHHHHHHhcCC----CEEEEEECCHHHHHHHHHCCCccccc---------CCccccccCCCCc-cCcCC
Confidence 9999999999999888665 32 24678899999999999999875432 2223334555543 22111
Q ss_pred ----EEEeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHHhhc
Q 006654 160 ----ITLCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFLKKV 210 (636)
Q Consensus 160 ----Viii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l~~~ 210 (636)
-...+.++..+.+.++ |+ ...|. + ..+ +...++ .+...|+..|.+.|++.
T Consensus 147 ~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~-~~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 147 VCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDAS-KDIDEVKKKLIEIISKK 210 (211)
T ss_pred CCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHccc
Confidence 1234555556666554 33 33333 1 112 445555 67788899999998763
No 53
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.23 E-value=4.5e-11 Score=118.72 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=80.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCCCCc---------------H----HHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGT---------------K----VQCLTSASSAL 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~~~~---------------~----~~~~~~~~~~L 75 (636)
....|.+++|.|+|||||||++..+...+ ...+++|+.|.++...... . ......+..++
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~ 90 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI 90 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999987 4468899999997542210 0 11225566777
Q ss_pred hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 76 ~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
..+.++|+|++.........+++. ++.||.+.++++.+|.++.+.|+..|....
T Consensus 91 ~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~ 145 (199)
T PF06414_consen 91 ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEG 145 (199)
T ss_dssp HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred HcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence 889999999998888777777777 889999999999999999999999997654
No 54
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.6e-10 Score=113.14 Aligned_cols=145 Identities=18% Similarity=0.272 Sum_probs=95.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCCCCC------------------cHHHHHHHHHHHHhCC---C
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSG------------------TKVQCLTSASSALKKG---K 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~~~~------------------~~~~~~~~~~~~L~~G---~ 79 (636)
.|+++|+|||||||+|++|++.++ ..||+++++ +.+... +.......+...+... .
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 478999999999999999999987 889997555 322111 1222224455555443 2
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh--cCCCccC
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--ELPKLSE 155 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f--e~P~~~E 155 (636)
.||+|+++.+..+...+.++ .+.+.+. .++.++++.+.+..|...|.. +.++.++.+.+|+.... ..|.. +
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----r~dd~~~~~~~R~~~y~~~~~pli-~ 154 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----REDDNEETVKKRLKVYHEQTAPLI-E 154 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc----cccCCHHHHHHHHHHHHhcccchh-h
Confidence 79999999999999888877 6666444 788999999999999999975 22345555555544322 23332 1
Q ss_pred CccEEEEeCChhHHHHHHHH
Q 006654 156 GFSRITLCQNENDVQAALDT 175 (636)
Q Consensus 156 gfd~Viii~~~~~vdaiv~~ 175 (636)
-+. ..++...+++.+.+.
T Consensus 155 ~y~--~~id~~~~i~~v~~~ 172 (178)
T COG0563 155 YYS--VTIDGSGEIEEVLAD 172 (178)
T ss_pred hhe--eeccCCCCHHHHHHH
Confidence 111 334455555655543
No 55
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.21 E-value=3.7e-10 Score=109.92 Aligned_cols=122 Identities=20% Similarity=0.318 Sum_probs=80.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHH----HHHHHh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTS----ASSALK 76 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~----~~~~L~ 76 (636)
..+|+++|+|||||||+|+.|++.++ +.+++.+++ +.. ...+...+... +...+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG--FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG 80 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC
Confidence 45789999999999999999999998 677877443 221 01111122222 333345
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 77 KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 77 ~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
.+.+||+|+++.+..+...+... ......+++|++|.+++.+|+..|..... +.+...+.+.+++..
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~d~~~~~~~~r~~~ 147 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSEDTMVKRLLKRAETSG-RVDDNEKTIKKRLET 147 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcccccCC-CCCCCHHHHHHHHHH
Confidence 67889999998887666655333 12233589999999999999999975322 333444444455543
No 56
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.21 E-value=2.9e-10 Score=115.75 Aligned_cols=106 Identities=21% Similarity=0.235 Sum_probs=79.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-CC------------------CCCcHHHHHHHHHHHHhC--
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KG------------------KSGTKVQCLTSASSALKK-- 77 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~~------------------~~~~~~~~~~~~~~~L~~-- 77 (636)
.|..|+|+|+|||||||+|+.|++.++ +.+|+.|++. +. ...+.+.+...+.+.+.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence 345589999999999999999999998 7788876653 21 111233444555566543
Q ss_pred ---CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 78 ---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 78 ---G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
+.+||+|+++.+..|+..+.... ..-.+++|++|.+++.+|+..|..++
T Consensus 83 ~~~~~g~iLDGfPRt~~Qa~~l~~~~---~~~~vi~l~~~~~~~~~Rl~~Rr~~~ 134 (229)
T PTZ00088 83 DDCFKGFILDGFPRNLKQCKELGKIT---NIDLFVNIYLPRNILIKKLLGRRICN 134 (229)
T ss_pred cccCceEEEecCCCCHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHcCcCCC
Confidence 46799999999999998875442 12247899999999999999997654
No 57
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.8e-10 Score=107.94 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=98.1
Q ss_pred EccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------CC------CCcHHHHH-HHHHHHHhCCCeEEEeCCCCC
Q 006654 26 VGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GK------SGTKVQCL-TSASSALKKGKSVFLDRCNLE 89 (636)
Q Consensus 26 vG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~~------~~~~~~~~-~~~~~~L~~G~~VIID~tn~~ 89 (636)
+|..||||||+++.|+++++ +..|+.|++.. +. +-.|-+.+ ..+......++.+||-+..+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg--~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALK 78 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG--AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALK 78 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC--CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHH
Confidence 49999999999999999999 56699888742 11 11232222 333333455666788887888
Q ss_pred HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCChhHH
Q 006654 90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV 169 (636)
Q Consensus 90 ~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~~~v 169 (636)
+.+|..+ +.....+.+|||+.+.+++.+|...|..| -.+...+++|...+|+|...| +++.++....+
T Consensus 79 r~YRD~L---R~~~~~~~Fv~L~g~~~~i~~Rm~~R~gH------FM~~~ll~SQfa~LE~P~~de---~vi~idi~~~~ 146 (161)
T COG3265 79 RSYRDLL---REANPGLRFVYLDGDFDLILERMKARKGH------FMPASLLDSQFATLEEPGADE---DVLTIDIDQPP 146 (161)
T ss_pred HHHHHHH---hccCCCeEEEEecCCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCC---CEEEeeCCCCH
Confidence 8888766 44444578999999999999999999998 789999999999999999766 34444443344
Q ss_pred HHHH
Q 006654 170 QAAL 173 (636)
Q Consensus 170 daiv 173 (636)
+.++
T Consensus 147 e~vv 150 (161)
T COG3265 147 EEVV 150 (161)
T ss_pred HHHH
Confidence 4444
No 58
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=99.18 E-value=1.3e-11 Score=119.26 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=92.4
Q ss_pred cCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhc
Q 006654 190 FGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQ 269 (636)
Q Consensus 190 ~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~ 269 (636)
.+. ++....|.+|++.+++.+.. .+|.- . .|...++.|.+.-|++.|.|........+.|..++.+||.
T Consensus 31 v~~-ai~~~~G~~l~~e~~~~~~~-~~G~~-v--------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~ 99 (165)
T cd02908 31 VDG-AIHRAAGPELLEECRELRGC-PTGEA-V--------ITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLE 99 (165)
T ss_pred HHH-HHHHHhCHHHHHHHHHhCCC-CCCCE-E--------EeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHH
Confidence 444 78999999999999876654 44531 1 2455677788999988888875434557788999999999
Q ss_pred ccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654 270 NGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (636)
Q Consensus 270 ~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (636)
.+.+.+++|||||+||||+||||.++||+++++++++|+++..
T Consensus 100 ~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~ 142 (165)
T cd02908 100 LARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHD 142 (165)
T ss_pred HHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999998743
No 59
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.16 E-value=7e-10 Score=108.47 Aligned_cols=135 Identities=20% Similarity=0.202 Sum_probs=92.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CCC------cHHHHH-HHHHHHHhC-CCeEEE
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSG------TKVQCL-TSASSALKK-GKSVFL 83 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~~------~~~~~~-~~~~~~L~~-G~~VII 83 (636)
.+++++|++||||||+++.++..++ ..+++.|.+... ... .+.... ..+...+.. ..++|+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~--~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv 81 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS--AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV 81 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC--CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5789999999999999999999887 457887764321 000 121222 222222232 345666
Q ss_pred eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEe
Q 006654 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii 163 (636)
.+++....|..+ ++.+..+.+|+|++|.+++.+|+..|..+ ..+.+++.+|...+++|...|. .++.+
T Consensus 82 -~s~~~~~~R~~~---r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~~~~~vl~~Q~~~~e~~~~~e~--~~~~~ 149 (176)
T PRK09825 82 -CSSLKKQYRDIL---RKSSPNVHFLWLDGDYETILARMQRRAGH------FMPPDLLQSQFDALERPCADEH--DIARI 149 (176)
T ss_pred -EEecCHHHHHHH---HhhCCCEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHcCCCCCCcC--CeEEE
Confidence 667877777655 55566788999999999999999999764 4688999999999998876553 24444
Q ss_pred CChhHH
Q 006654 164 QNENDV 169 (636)
Q Consensus 164 ~~~~~v 169 (636)
+....+
T Consensus 150 d~~~~~ 155 (176)
T PRK09825 150 DVNHDI 155 (176)
T ss_pred ECCCCH
Confidence 444333
No 60
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.16 E-value=3.9e-10 Score=106.84 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=72.5
Q ss_pred EEccCCCcHHHHHHHHHHHcCCCeEEeehhh-hc------------------CCCCCcHHHHHHHHHHHHhC---CCeEE
Q 006654 25 MVGAPGSGKSTFCEHVMRSSARPWARICQDT-IN------------------KGKSGTKVQCLTSASSALKK---GKSVF 82 (636)
Q Consensus 25 LvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-ir------------------~~~~~~~~~~~~~~~~~L~~---G~~VI 82 (636)
++|+|||||||+|+.|+++++ +.||+..+ ++ ++...+.+.+...+...|.. .+++|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceee
Confidence 689999999999999999998 88998633 33 22222344455666666654 47899
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHh
Q 006654 83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~ 124 (636)
||+++.+..+...|..+ ...+..+ .+|+|++|.+.+.+|+..
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 99999999999998875 4344444 789999999999999887
No 61
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.16 E-value=6.1e-10 Score=107.46 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=89.4
Q ss_pred EccCCCcHHHHHHHHHHHcCCCeEEeehhhhc------CCCCC---------cHHHHH-HHHHHHHhC-CCeEEEeCCCC
Q 006654 26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSG---------TKVQCL-TSASSALKK-GKSVFLDRCNL 88 (636)
Q Consensus 26 vG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir------~~~~~---------~~~~~~-~~~~~~L~~-G~~VIID~tn~ 88 (636)
+|+|||||||+++.|+..++ ..+++.|.+. ....+ .+.... ..+...+.. |..||+ .+++
T Consensus 1 ~G~sGsGKSTla~~la~~l~--~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~s~~ 77 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-CSAL 77 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC--CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-Eecc
Confidence 59999999999999999998 5678887742 11111 111111 222222333 444555 7788
Q ss_pred CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCChhH
Q 006654 89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNEND 168 (636)
Q Consensus 89 ~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~~~ 168 (636)
....|..+ ++.+.++.+|++++|.++|.+|+..|..+ ..+.+++..|...+++|...|. .++.++....
T Consensus 78 ~~~~r~~~---~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~a~~~vl~~Q~~~~ep~~~~e~--~~~~id~~~~ 146 (163)
T PRK11545 78 KKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET--DVLVVDIDQP 146 (163)
T ss_pred hHHHHHHH---HccCCCEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHcCCCCCCCC--CEEEEeCCCC
Confidence 77777555 55667789999999999999999999764 2377889999999998876552 3445554444
Q ss_pred HHHHH
Q 006654 169 VQAAL 173 (636)
Q Consensus 169 vdaiv 173 (636)
++.++
T Consensus 147 ~~~~~ 151 (163)
T PRK11545 147 LEGVV 151 (163)
T ss_pred HHHHH
Confidence 33333
No 62
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.15 E-value=2.7e-10 Score=108.27 Aligned_cols=101 Identities=27% Similarity=0.351 Sum_probs=77.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC---CC----cHHH----HHHHHHHHHhCCCeEEEeCCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---SG----TKVQ----CLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~---~~----~~~~----~~~~~~~~L~~G~~VIID~tn 87 (636)
+|+|+|+|||||||+|+.|++.+ +..+.+++.|.++... .+ .... ....+...++.|..||+|.++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 47899999999999999999887 4446678888886421 11 1111 123344456789999999999
Q ss_pred CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 88 ~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
.....|..+..+ . +..+.+++|++|.++|.+|..+
T Consensus 81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence 999999888887 5 6788899999999999999654
No 63
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=99.12 E-value=6.7e-14 Score=147.40 Aligned_cols=413 Identities=23% Similarity=0.185 Sum_probs=249.1
Q ss_pred eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEe
Q 006654 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii 163 (636)
|.++..+. +..++.......+++..+...+.+.+..+...|..|.......-......-|+..++.+....++..+.+.
T Consensus 3 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~q~~ds~~~~~~v~~~~~~~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD 81 (422)
T KOG2134|consen 3 DRERLLRE-DSEFISYGLHEFEVHKKVTPEPAQSKDSDLVGTLVHLPQKIGGRWSSTENGMLQIFTLPKVNGGSKIIMFD 81 (422)
T ss_pred cccccccc-chhHHhcCCcccceeecccCCccccccCcccccccccccccCCCcccccCcceEEeeccccCCCcceEEEe
Confidence 44555555 55665553344455666667788888888888775543333334445556667777888877787887776
Q ss_pred CChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcc
Q 006654 164 QNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE 243 (636)
Q Consensus 164 ~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (636)
-+...+++....+-.++|-|+..-.|....+..+..+.+|+.|+........-+. -..+..
T Consensus 82 ~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~---~~~~~f---------------- 142 (422)
T KOG2134|consen 82 YDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGK---LELEEF---------------- 142 (422)
T ss_pred cCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCc---chHHHH----------------
Confidence 6655666555555567888777655665556777777888888866444333222 000000
Q ss_pred eecccccccchhhc---ccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEE-Ee
Q 006654 244 ITSLLSDAAGEEVK---GTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLV-LV 319 (636)
Q Consensus 244 ~~~~~~~~~~~~~~---~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v-~~ 319 (636)
+...+ ..+.+-.. +-.+..--..++|.+|.-.|.+-...++..|.+-+..|+-+...-... ..
T Consensus 143 ---------~~Ki~~i~anl~vPi~----~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~ 209 (422)
T KOG2134|consen 143 ---------KKKIKAIVANLGVPIQ----LLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALR 209 (422)
T ss_pred ---------HHHHHHHHHhcCCceE----EeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCcccccc
Confidence 00000 00111100 000111124566666555555555555555555555555543221111 22
Q ss_pred ccCcchhhhhhhhHHhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCCh--hhHHHHHhhcHHHHHHH
Q 006654 320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGG--VNAAIFSAAGPALEVAT 397 (636)
Q Consensus 320 ~~~~~s~~Ls~vs~~~~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggG--Va~AI~~aaG~~l~~e~ 397 (636)
+....+.....+...+-.+-.....++...++++ +...+...+.+|+|++|+.|.+.++| |..+++.++|+....+.
T Consensus 210 ~kkd~S~~D~~FAaN~gvkF~tPeefF~g~~~~~-~~~~~fdp~n~i~~~t~~~~~~~~~~eiV~~vgfp~sGks~f~a~ 288 (422)
T KOG2134|consen 210 RKKDHSSADRKFAANAGVKFKTPEEFFLGVGVVT-WNSPGFDPKNVISRATSLCLKLDGHGEIVVAVGFPGSGKSTFAAK 288 (422)
T ss_pred CcccccHHHHHHHHhcCCccCCHHHHhccccccc-cCCCCCCchhHHhhhcchhcccCCCCcEEEEEecCCCCcchhhhh
Confidence 2333333332222222122223445677788888 76677777899999999999988888 99999999999988876
Q ss_pred HHhcCCCCCCcEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCC
Q 006654 398 AERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL 477 (636)
Q Consensus 398 ~~~~~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~ 477 (636)
.=......++++.+.+.|++|++.+....++++|+|+ ++.+|+-..++|--.+..++.+|-+||++..|...-+-..
T Consensus 289 ~~~~~~y~~vn~d~lg~~~~C~~~~~e~l~~~~sVvi---dnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~ 365 (422)
T KOG2134|consen 289 RVVPNGYKIVNADTLGTPQNCLLANAEALKHGKSVVI---DNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNN 365 (422)
T ss_pred hcccCceeEeecccCCCchhhHHHHHHHhhcccEEee---CCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccc
Confidence 6555666777887777888899999899999999998 3334443333333445677788888887776665532221
Q ss_pred CCCCCcCcccCCCccCCCCccccCCcccCCCccccCCCccccccccccccccccccccccccccccccccccCcccccch
Q 006654 478 SKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAW 557 (636)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (636)
. ..++|| ++-+.+.+| ...++|+|++|++++.+++.+...+-. +....+..+.|.|
T Consensus 366 ~----------fR~~~~-------~~~~~~~dm----~~~~~k~kf~~ptl~egft~i~ev~f~---~~~~~~ekl~k~~ 421 (422)
T KOG2134|consen 366 R----------FRELSD-------SVKDSGSDM----VFNSEKSKFQKPTLDEGFTNILEVPFK---DTRESGEKLYKMW 421 (422)
T ss_pred c----------chhhcc-------chhcccccc----eeehhhccccCchHhhhhhhhhccchh---hhhhhhhhHhhcc
Confidence 1 111222 111223344 678999999999999999988887755 3555566666766
No 64
>PRK06217 hypothetical protein; Validated
Probab=99.11 E-value=1e-09 Score=107.48 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=71.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------CCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------SGTKVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R 93 (636)
..|+|+|.|||||||+|++|++.++ +.+++.|.+.... ..+.+.....+.+.+..+..+|||++... . +
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~-~-~ 77 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD--IPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG-W-G 77 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH-H-H
Confidence 3589999999999999999999998 5578888775321 22344445666677777788999985432 1 1
Q ss_pred HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 94 TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 94 ~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
..+. ...+. +|+|++|.++|.+|+..|...
T Consensus 78 ~~~~--~~~d~---~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 78 DPLE--PLFDL---VVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred HHHH--hhCCE---EEEEECCHHHHHHHHHcCccc
Confidence 1111 33343 789999999999999999753
No 65
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=99.09 E-value=1.9e-09 Score=103.09 Aligned_cols=139 Identities=17% Similarity=0.277 Sum_probs=100.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH--hCCCeEEEeCCCCCHHHHHHHHHh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDRCNLEREQRTDFVKL 99 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L--~~G~~VIID~tn~~~~~R~~l~~l 99 (636)
+|+-++.+||||||+|..|..-+|. |.|+..|.+... ....+.+.+.+.| .....||+|..|.....|+.+.+.
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~ 76 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFED 76 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHH
Confidence 4678999999999999999999874 889999999433 4555677888888 555679999999999999987766
Q ss_pred -CC--C-------CCeEEEEEEeCC--H----HHHHHHHHhcccccCC-CCCC----ChHHHHHHHHhhhcCCCc----c
Q 006654 100 -GG--P-------EVDVHAVVLDLP--A----KLCISRSVKRIEHEGN-LQGG----KAAAVVNRMLQKKELPKL----S 154 (636)
Q Consensus 100 -~~--~-------g~~v~vV~Ld~p--~----e~l~~R~~~R~~~~~~-~~~~----vp~evi~rm~~~fe~P~~----~ 154 (636)
.. . +..+.++.+..+ . +++.+|+.+|+..... +.+. ....+++.+.++|++... -
T Consensus 77 ~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~~~~pD 156 (168)
T PF08303_consen 77 VSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDPDREPD 156 (168)
T ss_pred HHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 32 2 333333333322 2 5789999999964333 3322 235688888999987554 4
Q ss_pred CCccEEEEeC
Q 006654 155 EGFSRITLCQ 164 (636)
Q Consensus 155 Egfd~Viii~ 164 (636)
.+|+.|+.++
T Consensus 157 ~~FD~vI~L~ 166 (168)
T PF08303_consen 157 SGFDHVIDLD 166 (168)
T ss_pred cccCEeEeCc
Confidence 5788887654
No 66
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.07 E-value=6.9e-10 Score=112.04 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=122.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhCC-
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKKG- 78 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~G- 78 (636)
++.-++++|+|||||+|+|+.+.+.++ .+||.+ |.+|+. ...+.+.+..++...|..+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~--~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFG--VIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcC--CccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc
Confidence 567789999999999999999999998 667775 555531 2223444455555567666
Q ss_pred --CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 006654 79 --KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE 155 (636)
Q Consensus 79 --~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~E 155 (636)
+++|+|+++.+..+...+.+. ...+ .++.|.+|++.+.+|+..|..|+.. .+.++..|.+|.. .
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d---~Vi~l~vp~~~L~~ri~~r~ihp~s---------G~~Yh~~~~pPk~-~ 158 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQID---LVINLKVPEEVLVDRITGRRIHPAS---------GRVYHLEFNPPKV-P 158 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcc---eEEEecCCHHHHHHHHhcccccCcc---------cceecccccCCcc-c
Confidence 679999999999888776555 4444 4889999999999999999998754 5666677878774 4
Q ss_pred CccEEE----EeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHHhhc
Q 006654 156 GFSRIT----LCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFLKKV 210 (636)
Q Consensus 156 gfd~Vi----ii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l~~~ 210 (636)
+.++++ +.+.++..+++..+ |. ...|. + ..+ ....+. ....+|..++.+|.+.
T Consensus 159 ~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~--~~~~v~~~v~~~l~~~ 225 (235)
T KOG3078|consen 159 GKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGE--KPEEVFPNVYAFLSKK 225 (235)
T ss_pred cccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCc--chhHhHHHHHHHHHhh
Confidence 667765 44555555555544 44 33443 2 222 122222 3688999999999874
No 67
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.06 E-value=1.8e-09 Score=103.45 Aligned_cols=103 Identities=22% Similarity=0.265 Sum_probs=75.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCC----cH-------HHHHHHHHHHHhCCCeEEEe
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK-------VQCLTSASSALKKGKSVFLD 84 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~----~~-------~~~~~~~~~~L~~G~~VIID 84 (636)
++.+|+|+|+|||||||+|++|.+++ +.....++.|.+|.+... +. .++...+.....+|..||++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 46789999999999999999998776 456789999999975322 11 12234555556889999999
Q ss_pred CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
.....++.|....++ ... .+.-||+++|.++|.+|..
T Consensus 81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTT
T ss_pred eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCc
Confidence 999999999888877 543 5678999999999999953
No 68
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.06 E-value=7.1e-11 Score=110.87 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=83.1
Q ss_pred CCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhcccCC
Q 006654 194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS 273 (636)
Q Consensus 194 ~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~ 273 (636)
+++.++|.++++.+++......+|. .. .|.+.++.|.+.-|.+.+.+.. . ....+..++.+||.++.+
T Consensus 36 aI~~~~G~~l~~~~~~~~~~~~~G~--~~-------vT~~~~L~~k~IiH~~~p~~~~--~-~~~~l~~~~~~~L~~a~~ 103 (137)
T cd02903 36 AILRKAGPELQKELDKAKLGQTVGS--VI-------VTKGGNLPCKYVYHVVLPNWSN--G-ALKILKDIVSECLEKCEE 103 (137)
T ss_pred HHHHhccHHHHHHHHHHcCCCCCCe--EE-------EecCCCCCCCEEEEecCCCCCC--c-hHHHHHHHHHHHHHHHHH
Confidence 7889999999999887655544443 21 1344566788888887777765 2 456788899999999999
Q ss_pred CCCCccccccCccCCCCCChHHHHHHHHHHHHHH
Q 006654 274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF 307 (636)
Q Consensus 274 ~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f 307 (636)
.+++|||||+||||+||||.++||+++++++.+|
T Consensus 104 ~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 104 LSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999876
No 69
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.05 E-value=1.2e-09 Score=105.80 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=75.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------------cHHHHHHHHHH-HHhCCCeEEEeC--
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASS-ALKKGKSVFLDR-- 85 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------------~~~~~~~~~~~-~L~~G~~VIID~-- 85 (636)
-|+|+|+|||||||+++.|++.++.+| +|.|.+.+...+ .++.+...+.. .+..+ +.||..
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F--~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~~ViaTGG 80 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF--IDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEED-NAVIATGG 80 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc--ccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEECCC
Confidence 489999999999999999999999554 777777433222 11223344444 44444 444443
Q ss_pred -CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 86 -CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 86 -tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
...+++.|..+ +..+. +|||++|.+++.+|+.....+|.. ....+.+.++..++
T Consensus 81 G~v~~~enr~~l---~~~g~---vv~L~~~~e~l~~Rl~~~~~RPll-~~~~~~~~l~~L~~ 135 (172)
T COG0703 81 GAVLSEENRNLL---KKRGI---VVYLDAPFETLYERLQRDRKRPLL-QTEDPREELEELLE 135 (172)
T ss_pred ccccCHHHHHHH---HhCCe---EEEEeCCHHHHHHHhccccCCCcc-cCCChHHHHHHHHH
Confidence 56777888777 55554 899999999999999955554442 23444444555444
No 70
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=99.05 E-value=1.3e-10 Score=113.54 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=89.6
Q ss_pred CccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccc-hhhcccCCh
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENP 262 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 262 (636)
|..+. +++.+.|.++++.++.. |. -++|. .. .|.+.++.|.++-|.+.|.|.... ....+.+..
T Consensus 31 ggv~~-ai~~~~G~~l~~e~~~~~~~~g~-~~~G~--~~-------~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~ 99 (175)
T cd02907 31 GGLAL-AIVKAGGPEIQEESDEYVRKNGP-VPTGE--VV-------VTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKK 99 (175)
T ss_pred CCHHH-HHHHHHhHHHHHHHHHHHHhcCC-CCCCc--EE-------EecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHH
Confidence 45555 78899999998776542 32 24554 11 133446678888888888776532 345678889
Q ss_pred hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654 263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (636)
Q Consensus 263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (636)
++.+||..+.+++++|||||+||||+||||.++||+++++++.+|+.+++
T Consensus 100 ~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~ 149 (175)
T cd02907 100 AILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKG 149 (175)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999863
No 71
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=99.04 E-value=8.1e-11 Score=114.65 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=92.7
Q ss_pred HHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhc-----CCCCCCCCCCcccCCCCCCcccccccccccCc
Q 006654 168 DVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKV-----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQ 242 (636)
Q Consensus 168 ~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (636)
.+|+++++-+ |+. ..+|+.|. +++...+++|.+-.... +-..++|. ++ -|...+++...+-
T Consensus 16 ~~daIVnaAN---~~l-~~gGGVd~-AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~-Av--------it~~~~l~a~~Vi 81 (179)
T COG2110 16 EADAIVNAAN---SQL-LGGGGVAG-AIHRAAGPQLEEECAEIAPKRGGGRIPVGE-AV--------ITEAGRLPAKYVI 81 (179)
T ss_pred ehhheeeccc---ccC-CCCCcHHH-HHHHHhhHHHHHHHHHHhhhhcCCCCCceE-EE--------EccCcCCCCCEEE
Confidence 6777776533 221 11578878 89999999999666653 22234443 11 1122233333444
Q ss_pred ceecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHh
Q 006654 243 EITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310 (636)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~ 310 (636)
|.+.+.|..+++...+.+..++..||.++.+++++|||||+||||+||||.+++++|+++++.+|+..
T Consensus 82 H~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~ 149 (179)
T COG2110 82 HTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE 149 (179)
T ss_pred ecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc
Confidence 44445555456777789999999999999999999999999999999999999999999999999975
No 72
>PRK08118 topology modulation protein; Reviewed
Probab=99.04 E-value=1.3e-09 Score=105.63 Aligned_cols=96 Identities=22% Similarity=0.347 Sum_probs=64.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--CCCCC-cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK 98 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~~~~~-~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~ 98 (636)
.|+++|+|||||||+|++|++.++. .+++.|.+. .++.. +.+.....+.+.+ .+..+|+|+. +.......+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~--~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~-~~~~wVidG~-~~~~~~~~l-- 76 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI--PVHHLDALFWKPNWEGVPKEEQITVQNELV-KEDEWIIDGN-YGGTMDIRL-- 76 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--CceecchhhcccCCcCCCHHHHHHHHHHHh-cCCCEEEeCC-cchHHHHHH--
Confidence 4889999999999999999999984 446666554 22322 3333334444444 4567999994 332221112
Q ss_pred hCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 99 LGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 99 l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+ .+|+|++|.++|..|+..|..
T Consensus 77 -~~~d---~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 77 -NAAD---TIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred -HhCC---EEEEEeCCHHHHHHHHHHHHH
Confidence 2222 289999999999999999965
No 73
>PRK13948 shikimate kinase; Provisional
Probab=99.02 E-value=2.5e-09 Score=105.14 Aligned_cols=101 Identities=18% Similarity=0.110 Sum_probs=68.6
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------------cHHHHHHH-HHHHHhCCCeE
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTS-ASSALKKGKSV 81 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------------~~~~~~~~-~~~~L~~G~~V 81 (636)
...++.+|+|+|+|||||||+++.|++.++ +..+|.|.+.....+ .+.++... +.+.+..+..|
T Consensus 6 ~~~~~~~I~LiG~~GsGKSTvg~~La~~lg--~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~V 83 (182)
T PRK13948 6 IERPVTWVALAGFMGTGKSRIGWELSRALM--LHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAV 83 (182)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeE
Confidence 345678999999999999999999999998 455788876543222 12222233 33333444444
Q ss_pred EEe--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 82 FLD--RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 82 IID--~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
|.- ++...+..|..+ ++.+. +|||++|.+++.+|+..
T Consensus 84 Ia~GgG~v~~~~n~~~l---~~~g~---vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 84 ISLGGGTFMHEENRRKL---LSRGP---VVVLWASPETIYERTRP 122 (182)
T ss_pred EECCCcEEcCHHHHHHH---HcCCe---EEEEECCHHHHHHHhcC
Confidence 432 466777777766 44444 78999999999999843
No 74
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.01 E-value=3.8e-09 Score=103.33 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=80.6
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC-----CcH------HHHHHHHHHHHhCCCeE
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-----GTK------VQCLTSASSALKKGKSV 81 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~-----~~~------~~~~~~~~~~L~~G~~V 81 (636)
...++.+|+|+|+|||||||+|+.|...+. ....+++.|.++.... ... ..+...+...+..|..|
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V 93 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIV 93 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 446788999999999999999999998763 2356788888864311 111 11224455667889999
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
|+|.++....+|..+..+ ... .+.++++++|.+++.+|..
T Consensus 94 I~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 94 ITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred EEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCc
Confidence 999999999999888887 544 5678999999999999943
No 75
>PRK07261 topology modulation protein; Provisional
Probab=99.01 E-value=1.4e-09 Score=105.77 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=70.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--CCC-cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--KSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK 98 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--~~~-~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~ 98 (636)
.|+++|+|||||||||+.|++.++. .+++.|.++.. +.. +.+.....+.+.+..+. +|+|++.........+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~--~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l-- 76 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC--PVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERM-- 76 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC--CeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHH--
Confidence 4889999999999999999999884 45666766532 222 34455677777777665 9999975443323333
Q ss_pred hCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 99 LGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 99 l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.... .+|+|++|..+|..|+.+|..+
T Consensus 77 -~~ad---~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 77 -QEAD---QIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred -HHCC---EEEEEcCCHHHHHHHHHHHHHH
Confidence 2222 2889999999999999999754
No 76
>PRK13946 shikimate kinase; Provisional
Probab=99.00 E-value=3.6e-09 Score=103.91 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=79.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHH-HHHHHHHHhCCCeEEEe
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQC-LTSASSALKKGKSVFLD 84 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~-~~~~~~~L~~G~~VIID 84 (636)
.+..|+|+|+|||||||+++.|++.++ +.+++.|.+.....+. .... ...+.+.+..+..||..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg--~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~ 86 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG--LPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT 86 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC--CCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 456899999999999999999999999 4557877654322220 0111 13333344455556655
Q ss_pred C--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654 85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (636)
Q Consensus 85 ~--tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe 149 (636)
+ +.+.+..|..+ +..+. .|||++|.+++.+|+..|..++.. ....+.+.++++.+.+.
T Consensus 87 ggg~~~~~~~r~~l---~~~~~---~v~L~a~~e~~~~Rl~~r~~rp~~-~~~~~~~~i~~~~~~R~ 146 (184)
T PRK13946 87 GGGAFMNEETRAAI---AEKGI---SVWLKADLDVLWERVSRRDTRPLL-RTADPKETLARLMEERY 146 (184)
T ss_pred CCCCcCCHHHHHHH---HcCCE---EEEEECCHHHHHHHhcCCCCCCcC-CCCChHHHHHHHHHHHH
Confidence 4 45666666655 33333 689999999999999988765421 12345567777776664
No 77
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.99 E-value=2.1e-09 Score=106.79 Aligned_cols=138 Identities=21% Similarity=0.294 Sum_probs=107.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhh-hcCC---CCCc-------HHHHHHHHHHHHhCCCeEEEeC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDT-INKG---KSGT-------KVQCLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~-ir~~---~~~~-------~~~~~~~~~~~L~~G~~VIID~ 85 (636)
.||+++|.|.|||||.|+.|.+.+. +..+.|..|. +.-+ ..+. +..+...+.+.|..+..||+|.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~Ds 81 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDS 81 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEec
Confidence 3789999999999999999886653 2133333222 2211 1221 2235578888999999999999
Q ss_pred CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEE
Q 006654 86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT 161 (636)
Q Consensus 86 tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Vi 161 (636)
-|+-+-.|.++-.+ +..++..++|+..+|.++|.+.+..|..... ++.++++++.+..+||+|.....||.-.
T Consensus 82 lNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e---~gy~~e~le~L~~RyEeP~s~NRWDsPL 155 (281)
T KOG3062|consen 82 LNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGE---DGYDDELLEALVQRYEEPNSRNRWDSPL 155 (281)
T ss_pred ccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCC---CCCCHHHHHHHHHHhhCCCccccccCcc
Confidence 99999999999888 8888888999999999999999988876322 3588999999999999999988888643
No 78
>PLN02842 nucleotide kinase
Probab=98.98 E-value=3.9e-09 Score=117.67 Aligned_cols=170 Identities=21% Similarity=0.261 Sum_probs=103.2
Q ss_pred EEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-hcCC------------------CCCcHHHHHHHHHHHHhC----CCe
Q 006654 24 IMVGAPGSGKSTFCEHVMRSSARPWARICQDT-INKG------------------KSGTKVQCLTSASSALKK----GKS 80 (636)
Q Consensus 24 vLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-ir~~------------------~~~~~~~~~~~~~~~L~~----G~~ 80 (636)
++.|+|||||||+|+.|++.++ +.||+.++ ++.. ...+...+...+..++.. ..+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg--~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G 78 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG--LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKG 78 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCc
Confidence 4789999999999999999998 67777543 3321 122333444555555532 346
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccE
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR 159 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~ 159 (636)
+|||+++++..+.+.+... .... .+|+|++|.+++.+|+..|...+.. ...++..+.+|...+.-.+
T Consensus 79 ~ILDGfPRt~~Qa~~Le~~~~~PD---lVI~LDvpdevlleRl~gR~~dp~t---------G~iYh~~~~pP~~~~~~~r 146 (505)
T PLN02842 79 WLLDGYPRSFAQAQSLEKLKIRPD---IFILLDVPDEILIDRCVGRRLDPVT---------GKIYHIKNFPPESEEIKAR 146 (505)
T ss_pred EEEeCCCCcHHHHHHHHhcCCCCC---EEEEEeCCHHHHHHHHhcccccccc---------CCccccccCCCCccccccc
Confidence 9999999998877666444 2222 4899999999999999998765332 1122223334432221112
Q ss_pred EEEeCChhHHHHHHHH---hc-cCCCC-cccC---CCccCCCCCchhhHHHHHHHHhh
Q 006654 160 ITLCQNENDVQAALDT---YS-GLGPL-DTLP---HGSFGQKNPDAKIQLGIMKFLKK 209 (636)
Q Consensus 160 Viii~~~~~vdaiv~~---~~-~Lgpf-d~~p---hgc~~~~~~~~~v~~~i~k~l~~ 209 (636)
...+.++..+.+.++ |+ ...|. +.-+ +.+.++ .+...|..+|.++|.+
T Consensus 147 -L~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAs-qs~EeVfeeI~~iL~~ 202 (505)
T PLN02842 147 -LITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGN-RPKEVVFEEISSLLSQ 202 (505)
T ss_pred -cccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECC-CCHHHHHHHHHHHHHH
Confidence 123445555656555 44 33443 2122 445555 6677777788877765
No 79
>PRK00431 RNase III inhibitor; Provisional
Probab=98.97 E-value=3.9e-10 Score=110.24 Aligned_cols=111 Identities=13% Similarity=0.175 Sum_probs=87.1
Q ss_pred CCchhhHHHHHHHHhhc--C-CCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhcc
Q 006654 194 NPDAKIQLGIMKFLKKV--D-APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQN 270 (636)
Q Consensus 194 ~~~~~v~~~i~k~l~~~--g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~ 270 (636)
++....|.++++.+++. + ..-.+|. .. .|...++.|.+..|++.|.|........+.|..++.+||..
T Consensus 37 aI~~~~G~~l~~e~~~~~~~~~~l~~G~--~~-------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~ 107 (177)
T PRK00431 37 AIHRAAGPEILEECRELRQQQGPCPTGE--AV-------ITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLRL 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCe--EE-------EecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHHH
Confidence 78888888988877654 1 2223443 11 13445677888888888877653333567888999999999
Q ss_pred cCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654 271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN 313 (636)
Q Consensus 271 ~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~ 313 (636)
+.+.+++|||||+||||+||||.++||+++++++.+|++....
T Consensus 108 a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~ 150 (177)
T PRK00431 108 AAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKS 150 (177)
T ss_pred HHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999876544
No 80
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.97 E-value=1.8e-08 Score=99.06 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=64.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC------CCC-cHHHHH----------------------HH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKVQCL----------------------TS 70 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~------~~~-~~~~~~----------------------~~ 70 (636)
..+++|+||+||||||+++.|+...+..+...+...-+.. ... ..+... ..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE 81 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence 4579999999999999999998876633322221111100 000 000000 23
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 71 ASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 71 ~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+.+.+..|..||++++ +..+..+ +..+....+|++++|.+++.+|+..|.+
T Consensus 82 ~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~ 133 (186)
T PRK10078 82 IDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR 133 (186)
T ss_pred HHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence 5567788999999884 3333333 3344456688999999999999998854
No 81
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.97 E-value=6.3e-09 Score=101.26 Aligned_cols=143 Identities=16% Similarity=0.210 Sum_probs=82.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEeC-
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR- 85 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID~- 85 (636)
+..|+|+|++||||||+++.|++.++ +..++.|.......+. +......+...+.....+|+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~--~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC--CcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 44689999999999999999999988 4557777543221110 0111223333344344555553
Q ss_pred --CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEe
Q 006654 86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC 163 (636)
Q Consensus 86 --tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii 163 (636)
...++..|..+ +..+. +|||++|.++|.+|+..|..+|.. .+.-+.+.+..++... .|. ++.+.++.+-
T Consensus 82 gg~v~~~~~~~~l---~~~~~---vv~L~~~~e~~~~Ri~~~~~rP~~-~~~~~~~~~~~l~~~R-~~~-Y~~~Ad~~id 152 (172)
T PRK05057 82 GGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPLL-QVDDPREVLEALANER-NPL-YEEIADVTIR 152 (172)
T ss_pred CchhCCHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCHHHHHHHHHHHH-HHH-HHhhCCEEEE
Confidence 34455655444 34443 889999999999999876655432 1223345565555544 333 3443444443
Q ss_pred CChhHHHHHH
Q 006654 164 QNENDVQAAL 173 (636)
Q Consensus 164 ~~~~~vdaiv 173 (636)
.+...+++++
T Consensus 153 t~~~s~~ei~ 162 (172)
T PRK05057 153 TDDQSAKVVA 162 (172)
T ss_pred CCCCCHHHHH
Confidence 3333344433
No 82
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=98.96 E-value=2e-10 Score=107.93 Aligned_cols=55 Identities=31% Similarity=0.383 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccccc
Q 006654 559 SWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINK 616 (636)
Q Consensus 559 ~~~~a~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~~~ 616 (636)
||+.||..++-.||+ .++..-|+||||+|+||||++|+|||||...+|+|-++.+
T Consensus 2 sw~~~i~~~i~k~e~---V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~q 56 (184)
T KOG0562|consen 2 SWHEAIVMDIPKPEN---VYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQ 56 (184)
T ss_pred chhhhhhhcCCccce---eeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHH
Confidence 688666655555554 4555558999999999999999999999999999988764
No 83
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.95 E-value=6.4e-09 Score=99.60 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=71.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCC-eEEE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGK-SVFL 83 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~-~VII 83 (636)
.++.+|+|+|+|||||||+|+.|++.++ +..++.|.+.....+. +.+....+...+..+. .||.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~ 79 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG--YDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIS 79 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3567899999999999999999999998 5567777764332220 1111122233333333 3444
Q ss_pred eCC--CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654 84 DRC--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 84 D~t--n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f 148 (636)
.+. .+....|..+ +..+ .+|++++|.+.+.+|+..|..++... ..-..+.+..++...
T Consensus 80 ~g~~~~~~~~~r~~l---~~~~---~~v~l~~~~~~~~~R~~~~~~r~~~~-~~~~~~~~~~~~~~~ 139 (175)
T PRK00131 80 TGGGAVLREENRALL---RERG---TVVYLDASFEELLRRLRRDRNRPLLQ-TNDPKEKLRDLYEER 139 (175)
T ss_pred eCCCEeecHHHHHHH---HhCC---EEEEEECCHHHHHHHhcCCCCCCcCC-CCChHHHHHHHHHHH
Confidence 332 2333444333 2222 47899999999999999876533211 122334455555444
No 84
>PRK00625 shikimate kinase; Provisional
Probab=98.95 E-value=5.7e-09 Score=101.85 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=63.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-----cHH------------HHHHHHHHHHhCCCeEEEe
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----TKV------------QCLTSASSALKKGKSVFLD 84 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-----~~~------------~~~~~~~~~L~~G~~VIID 84 (636)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+-....+ +.. .....+.+.+.....||..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~--~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~ 79 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS--LPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVAL 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEEC
Confidence 489999999999999999999998 566888765322111 211 1223334445444445544
Q ss_pred C--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 85 ~--tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+ +....+.+.. ++..+. +|||++|.+++.+|+..|..
T Consensus 80 GGg~~~~~e~~~~---l~~~~~---Vv~L~~~~e~l~~Rl~~R~~ 118 (173)
T PRK00625 80 GGGTLMIEPSYAH---IRNRGL---LVLLSLPIATIYQRLQKRGL 118 (173)
T ss_pred CCCccCCHHHHHH---HhcCCE---EEEEECCHHHHHHHHhcCCC
Confidence 4 3344444433 333443 89999999999999998865
No 85
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=98.94 E-value=1.2e-09 Score=115.61 Aligned_cols=145 Identities=27% Similarity=0.389 Sum_probs=122.2
Q ss_pred ccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (636)
Q Consensus 14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R 93 (636)
++..+.+.+|+++|.|||||||++.......+ +.++++|.+ +++..|.....++|..|+.||+|.||.....|
T Consensus 263 ~~~~~~~eiV~~vgfp~sGks~f~a~~~~~~~--y~~vn~d~l-----g~~~~C~~~~~e~l~~~~sVvidnt~pd~~sr 335 (422)
T KOG2134|consen 263 LKLDGHGEIVVAVGFPGSGKSTFAAKRVVPNG--YKIVNADTL-----GTPQNCLLANAEALKHGKSVVIDNTNPDAESR 335 (422)
T ss_pred cccCCCCcEEEEEecCCCCcchhhhhhcccCc--eeEeecccC-----CCchhhHHHHHHHhhcccEEeeCCCCcchHHH
Confidence 34556669999999999999999999887766 888899887 78889999999999999999999999999999
Q ss_pred HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCCh
Q 006654 94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE 166 (636)
Q Consensus 94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~ 166 (636)
..|++. .+.+.++.++.+..+.+.....+..|..+.. ..+..++-++..+..+|+.|.+.|||-.+..++..
T Consensus 336 ~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~-~~~~~~dm~~~~~k~kf~~ptl~egft~i~ev~f~ 408 (422)
T KOG2134|consen 336 KYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDS-VKDSGSDMVFNSEKSKFQKPTLDEGFTNILEVPFK 408 (422)
T ss_pred HHHhhhHHHhCccceeeeeccHHHhhhccccchhhccc-hhcccccceeehhhccccCchHhhhhhhhhccchh
Confidence 999999 8888999999999999887777777765321 12345566778888899999999999988766654
No 86
>PRK13947 shikimate kinase; Provisional
Probab=98.93 E-value=6.7e-09 Score=99.97 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=65.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEeC---
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR--- 85 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID~--- 85 (636)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+. +......+.+.+.....+|+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g 80 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS--FGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG 80 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC--CCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence 389999999999999999999999 5568887765443221 1122233444454444455543
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
..+....+..+ ++.+. +|+|++|.+.+.+|+..|..++
T Consensus 81 ~vl~~~~~~~l---~~~~~---vv~L~~~~~~l~~Rl~~r~~rp 118 (171)
T PRK13947 81 VVLNPENVVQL---RKNGV---VICLKARPEVILRRVGKKKSRP 118 (171)
T ss_pred CcCCHHHHHHH---HhCCE---EEEEECCHHHHHHHhcCCCCCC
Confidence 23444443332 44443 8899999999999999886543
No 87
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.92 E-value=1.5e-08 Score=100.52 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=78.7
Q ss_pred ccccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC---CC----cH----HHHHHHHHHHHhCCC
Q 006654 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---SG----TK----VQCLTSASSALKKGK 79 (636)
Q Consensus 14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~---~~----~~----~~~~~~~~~~L~~G~ 79 (636)
...+++|.+|+|+|+|||||||+|+.|+..+ +.....++.|.++... .+ .. ..+...+...+..|.
T Consensus 18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~ 97 (198)
T PRK03846 18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGL 97 (198)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCC
Confidence 3556788999999999999999999999875 2346778888776431 11 11 122244555667888
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHH
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR 121 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R 121 (636)
.||.+..+.....|..+.++ ...+ +.+|||++|.+++.+|
T Consensus 98 ~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 98 VVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTPLAICEAR 138 (198)
T ss_pred EEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCCHHHHHhc
Confidence 88877777788999999888 6553 4578999999999999
No 88
>PRK13949 shikimate kinase; Provisional
Probab=98.91 E-value=1.2e-08 Score=99.09 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=61.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEE-eC--
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFL-DR-- 85 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VII-D~-- 85 (636)
-|+|+|+|||||||+++.|++.++ +.+++.|.+.....+ + +.++...+...+.....+|| ++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~--~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg 80 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG--LSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG 80 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 389999999999999999999998 555777766422111 1 11222333333443344555 44
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
......++..+ ++.+. +|||++|.+.+.+|+..+
T Consensus 81 ~~~~~~~~~~l---~~~~~---vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 81 APCFFDNMELM---NASGT---TVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred ccCCHHHHHHH---HhCCe---EEEEECCHHHHHHHHhcC
Confidence 23344455444 34454 789999999999999854
No 89
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=7.2e-10 Score=108.79 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=76.2
Q ss_pred CCchhhHHHHHHHHhhcCC-----CCCCCC---CCcccCCCCCCcccccccccccCcceecccccc-cchhhcccCChhh
Q 006654 194 NPDAKIQLGIMKFLKKVDA-----PSNTGS---TASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEV 264 (636)
Q Consensus 194 ~~~~~v~~~i~k~l~~~g~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 264 (636)
++|..+++++.--+..+.. .-.++. |+++++|+++ |.|.. ..++.. .|..||
T Consensus 61 ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~Lpak~vIHtvg------------------P~~~~d~~~~~~-~L~~~~ 121 (200)
T KOG2633|consen 61 AIHRAAGPELPLECAYLHGCRTGAAKSTGGYGLPAKRVIHTVG------------------PRWKEDKLQECY-FLHSCY 121 (200)
T ss_pred HHHHhcCCcchHHHHhhcCCCCCeeEecCCCCCceeEEEEecC------------------chhhccchHHHH-HHHHHH
Confidence 5566666666655554322 222332 7888888776 34443 123333 588899
Q ss_pred hhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654 265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN 313 (636)
Q Consensus 265 ~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~ 313 (636)
.|||.+|...++.+||||+||+|+||||.+.||++++++++.|++.++.
T Consensus 122 rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d 170 (200)
T KOG2633|consen 122 RSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKD 170 (200)
T ss_pred HHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999866
No 90
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.87 E-value=4.8e-08 Score=96.39 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=79.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeE--------------------Eeehhhhc----CCCCCcH--------H
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA--------------------RICQDTIN----KGKSGTK--------V 65 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~--------------------~Is~D~ir----~~~~~~~--------~ 65 (636)
.+|.+|+|+|||||||||++++|.+.++..+. .++.+.+. .+.+..+ -
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 46889999999999999999999987642111 11111111 1100000 0
Q ss_pred HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCChHHHHHH
Q 006654 66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNR 143 (636)
Q Consensus 66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~-p~e~l~~R~~~R~~~~~~~~~~vp~evi~r 143 (636)
.-...+.+.+.+|+.+|+|- .+..+..+ ...+..+.+|++.+ +.+++.+|+..|.. ...+++-.+
T Consensus 82 t~~~~i~~~~~~g~~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~-------~s~e~i~~R 148 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGT-------DSEESIEKR 148 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence 11244677889999999998 44555555 43333335677766 46889999998865 233455555
Q ss_pred HHhhhcCCCccCCccEEEEeC
Q 006654 144 MLQKKELPKLSEGFSRITLCQ 164 (636)
Q Consensus 144 m~~~fe~P~~~Egfd~Viii~ 164 (636)
+.++..+-.....||.++.-+
T Consensus 149 l~~~~~e~~~~~~~D~vI~N~ 169 (186)
T PRK14737 149 IENGIIELDEANEFDYKIIND 169 (186)
T ss_pred HHHHHHHHhhhccCCEEEECc
Confidence 555432222234566664443
No 91
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.87 E-value=1.8e-08 Score=115.13 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=81.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC----CeEEeehhhhcCCCCC----cH---H----HHHHHHHHHHhCCCeEE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKGKSG----TK---V----QCLTSASSALKKGKSVF 82 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~----~~~~Is~D~ir~~~~~----~~---~----~~~~~~~~~L~~G~~VI 82 (636)
..+.+|+|+|+|||||||+|+.|++.++. .+..++.|.++.+..+ +. . .+...+...++.|..+|
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI 469 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAI 469 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 35679999999999999999999998872 3477899998754322 11 1 11234455678899999
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
+|.++.....|..+.++ ++.+ .+.+|+|++|.++|.+|+
T Consensus 470 ~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~ 509 (568)
T PRK05537 470 CAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRD 509 (568)
T ss_pred EEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhc
Confidence 99999999999999888 7655 356789999999999996
No 92
>PRK01184 hypothetical protein; Provisional
Probab=98.87 E-value=3.7e-08 Score=96.22 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=68.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC-----CC------CcH----------HHHHHHHHHHHhC-
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG-----KS------GTK----------VQCLTSASSALKK- 77 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~-----~~------~~~----------~~~~~~~~~~L~~- 77 (636)
.+|+|+|+|||||||+|+ ++++++ +.+++. |.+++. .. +.. ......+...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREK 78 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhc
Confidence 479999999999999987 788888 667876 555432 11 000 0111232334433
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 78 -G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+..||+|++ +...++..|.+. . ..+.+|++++|.+++.+|+..|..
T Consensus 79 ~~~~vvidg~-r~~~e~~~~~~~~~---~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 79 GDEVVVIDGV-RGDAEVEYFRKEFP---EDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred CCCcEEEeCC-CCHHHHHHHHHhCC---cccEEEEEECCHHHHHHHHHHcCC
Confidence 567999997 677777766555 3 234688999999999999998864
No 93
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.85 E-value=2e-08 Score=94.60 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=62.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEeCCC--
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLDRCN-- 87 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID~tn-- 87 (636)
|+|+|+|||||||+|+.|++.++ +..++.|.+.....+ . +......+...+.....+||+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG--LPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC--CCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 78999999999999999999998 556788776533222 1 011112233344444455555322
Q ss_pred -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 88 -~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.....|..+ ...+ .+||+++|.+++.+|+..|..+
T Consensus 80 i~~~~~~~~~---~~~~---~~i~l~~~~e~~~~R~~~r~~r 115 (154)
T cd00464 80 VLREENRRLL---LENG---IVVWLDASPEELLERLARDKTR 115 (154)
T ss_pred cCcHHHHHHH---HcCC---eEEEEeCCHHHHHHHhccCCCC
Confidence 333332222 3333 3889999999999999998744
No 94
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.84 E-value=1.9e-08 Score=97.52 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=70.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC----C---cHH----HHHHHHHHHHhCCCeEEE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS----G---TKV----QCLTSASSALKKGKSVFL 83 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~----~---~~~----~~~~~~~~~L~~G~~VII 83 (636)
+++.+|+|+|+|||||||+|+.|+..+. ..+.+++.|.++.... . ... .+...+...+..|..||+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3567999999999999999999998763 2356788887753211 1 111 111233333467888999
Q ss_pred eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 006654 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
|+++.....|..+..+. ..+.+|++++|.+++.+|.
T Consensus 82 ~~~~~~~~~~~~l~~~~---~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 82 SAISPYRETREEVRANI---GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred ecCCCCHHHHHHHHhhc---CCeEEEEEcCCHHHHHHhC
Confidence 99877667776665541 2456899999999999995
No 95
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.84 E-value=3.3e-08 Score=95.43 Aligned_cols=107 Identities=23% Similarity=0.274 Sum_probs=78.4
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCC---C-cHH-------HHHHHHHHHHhCCCe
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-TKV-------QCLTSASSALKKGKS 80 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~---~-~~~-------~~~~~~~~~L~~G~~ 80 (636)
....++.+|+|.|++||||||+|.+|.+++ |.....+|.|.+|.+.. + +.+ ++...+.....+|--
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~i 97 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLI 97 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeE
Confidence 455678899999999999999999998775 45567899999986532 2 111 122333344466777
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
+|+.......+.|+.-.++ .+. .+.-||+++|.++|.+|--
T Consensus 98 viva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RDp 139 (197)
T COG0529 98 VIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRDP 139 (197)
T ss_pred EEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcCc
Confidence 7777777888888888777 443 4567899999999998854
No 96
>PRK06547 hypothetical protein; Provisional
Probab=98.83 E-value=2.2e-08 Score=97.59 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=70.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHH---HHHHHHHH--------------------
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---QCLTSASS-------------------- 73 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~---~~~~~~~~-------------------- 73 (636)
...+.+|++.|+|||||||+|+.|++.++ +..++.|.+...+.+... .+...+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~ 89 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG--FQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV 89 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence 45678889999999999999999999987 556888888765433211 11111111
Q ss_pred HHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 74 ~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.+..+..+|++++...... +.++ .+ +..+..|++++|.+++.+|...|..+
T Consensus 90 ~l~~~~vVIvEG~~al~~~---~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~ 141 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAA---NVALASL-LGEVLTVWLDGPEALRKERALARDPD 141 (172)
T ss_pred EeCCCCeEEEEehhhccHH---HHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch
Confidence 0112345888996443222 3333 33 33356899999999999999999864
No 97
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.83 E-value=3.3e-08 Score=96.55 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=75.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC----C----CC-----------c-----HHHHHHHHHHHHh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG----K----SG-----------T-----KVQCLTSASSALK 76 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~----~----~~-----------~-----~~~~~~~~~~~L~ 76 (636)
.+|+|-|+|.|||||+|+.|...+..+|.++.-|.+... . .+ . .......+....+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~ 81 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR 81 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999888531 0 01 1 1123356667778
Q ss_pred CCCeEEEeCCCCCHHH-HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 77 KGKSVFLDRCNLEREQ-RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 77 ~G~~VIID~tn~~~~~-R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
.|.+||+|+....... ...|.++ . ++++..|-+.||.+++.+|...|+.+..
T Consensus 82 aG~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~RgDR~~ 135 (174)
T PF07931_consen 82 AGNNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERARGDRPI 135 (174)
T ss_dssp TT-EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHHHTSSST
T ss_pred CCCCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHhcCCcch
Confidence 9999999997777664 4555455 4 4667788889999999999999998643
No 98
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.83 E-value=4.2e-08 Score=99.28 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=79.6
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC---------C--c----------HHHHHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS---------G--T----------KVQCLTSAS 72 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~---------~--~----------~~~~~~~~~ 72 (636)
...+.+|+|+|+||.|||++|++|.+-+. ....+++...+|.... . . ...+++.+.
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~ 88 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI 88 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999997653 4455666555542110 0 0 112345566
Q ss_pred HHHh--CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc-CCCCCCChHHHHHHHHhh
Q 006654 73 SALK--KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE-GNLQGGKAAAVVNRMLQK 147 (636)
Q Consensus 73 ~~L~--~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~-~~~~~~vp~evi~rm~~~ 147 (636)
..|. .|..-|+|+||.+.+.|+.+.+. .+.+..+.+|..-++++.+++++..+.... ....+-.++++++.+.++
T Consensus 89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R 167 (222)
T PF01591_consen 89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR 167 (222)
T ss_dssp HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence 6776 34567999999999999999999 877877666666788888898888776542 112234556666665544
No 99
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.83 E-value=1.5e-08 Score=98.27 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=69.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC--CC--cHHH-----HHHHHHH-HHhCCCeEEEe
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK--SG--TKVQ-----CLTSASS-ALKKGKSVFLD 84 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~--~~--~~~~-----~~~~~~~-~L~~G~~VIID 84 (636)
.+|.+|+++|+|||||||+|+.|++.+. ..+..++.|.++... .+ .... ....+.+ ....|..||+|
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~ 84 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVT 84 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4677999999999999999999998775 235678888886421 11 1111 1122222 33678899999
Q ss_pred CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
+++...+.+..+..+ .....+|||++|.+++.+|...
T Consensus 85 ~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 85 TISMFDEIYAYNRKH---LPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred eCCcHHHHHHHHHhh---cCCeEEEEEeCCHHHHHHhchh
Confidence 987655444444333 1123578999999999999753
No 100
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.82 E-value=4.1e-08 Score=113.97 Aligned_cols=105 Identities=27% Similarity=0.293 Sum_probs=81.3
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCC----cH-------HHHHHHHHHHHhCCCeE
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK-------VQCLTSASSALKKGKSV 81 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~----~~-------~~~~~~~~~~L~~G~~V 81 (636)
...+|.+|+|+|+|||||||+|+.|++.+ +..+.+++.|.++..... +. ..+...+...+..|..|
T Consensus 456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~V 535 (632)
T PRK05506 456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIV 535 (632)
T ss_pred hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 34468999999999999999999999886 334688999999864321 11 12224455566889999
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
|+|.++..+..|..+.++ ... .+.++||++|.++|.+|.
T Consensus 536 ivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 536 LVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred EEECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence 999999999999888777 543 567899999999999995
No 101
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.82 E-value=3.9e-08 Score=95.95 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=90.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee--------------------hhhhc----CCCCCcHH--------H
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC--------------------QDTIN----KGKSGTKV--------Q 66 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is--------------------~D~ir----~~~~~~~~--------~ 66 (636)
+..|++|.||+|+||||+.++|.+..+ ....|+ .+.+. .+.+..|. .
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 578999999999999999999998874 222233 12111 11111111 1
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 006654 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (636)
Q Consensus 67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~L-d~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm 144 (636)
....+...+..|+.||+|- ..+....+ +..+ .+..|++ .++.+++.+|+..|+. +..+.+-+||
T Consensus 82 ~~~~ve~~~~~G~~vildI------d~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgt-------ds~e~I~~Rl 147 (191)
T COG0194 82 SREPVEQALAEGKDVILDI------DVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGT-------DSEEVIARRL 147 (191)
T ss_pred cHHHHHHHHhcCCeEEEEE------ehHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCC-------CCHHHHHHHH
Confidence 2356778899999999998 55555556 4554 4444555 5667999999999987 4666777777
Q ss_pred HhhhcCCCccCCccEEEEeCChhHH
Q 006654 145 LQKKELPKLSEGFSRITLCQNENDV 169 (636)
Q Consensus 145 ~~~fe~P~~~Egfd~Viii~~~~~v 169 (636)
.+...+-.....|+.+++-++.+.+
T Consensus 148 ~~a~~Ei~~~~~fdyvivNdd~e~a 172 (191)
T COG0194 148 ENAKKEISHADEFDYVIVNDDLEKA 172 (191)
T ss_pred HHHHHHHHHHHhCCEEEECccHHHH
Confidence 7766555555668988666554443
No 102
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.80 E-value=3.4e-08 Score=112.54 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=84.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEe
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLD 84 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID 84 (636)
.....|+|+|+|||||||+++.|++.++.+ .+|.|.+.+...+ + ++++...+.+.+....+.||.
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~--fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs 81 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLP--FADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFS 81 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCC--EEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 345679999999999999999999999944 5777766433222 1 122223333333322344554
Q ss_pred C---CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEE
Q 006654 85 R---CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (636)
Q Consensus 85 ~---tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~V 160 (636)
. ....++.|..+.++ ++.+. +|||+.|.+.+.+|+..+..+|... ..+.+.++.++++. .|. ++.+.++
T Consensus 82 ~GGG~v~~~~n~~~L~~~~~~~g~---vv~L~~~~~~l~~Rl~~~~~RPll~--~~~~~~~~~l~~~R-~~~-Y~~~Ad~ 154 (542)
T PRK14021 82 LGGGAPMTPSTQHALASYIAHGGR---VVYLDADPKEAMERANRGGGRPMLN--GDANKRWKKLFKQR-DPV-FRQVANV 154 (542)
T ss_pred CCCchhCCHHHHHHHHHHHhcCCE---EEEEECCHHHHHHHHhCCCCCCCCC--CCcHHHHHHHHHHH-HHH-HHhhCCE
Confidence 3 46677788877666 66665 8899999999999987655444321 12234445554432 333 3444455
Q ss_pred EEe
Q 006654 161 TLC 163 (636)
Q Consensus 161 iii 163 (636)
.+.
T Consensus 155 ~i~ 157 (542)
T PRK14021 155 HVH 157 (542)
T ss_pred EEE
Confidence 443
No 103
>PRK03839 putative kinase; Provisional
Probab=98.79 E-value=2.3e-08 Score=97.46 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=60.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-CC----c-----HHHHHHHHHHHHhCCCeEEEeCCCCCHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG----T-----KVQCLTSASSALKKGKSVFLDRCNLERE 91 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-~~----~-----~~~~~~~~~~~L~~G~~VIID~tn~~~~ 91 (636)
+|+|+|+|||||||+|+.|++.++ +.+++.|.+.... .+ . ...+...+.+. ..+..+|+|+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~--~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vIidG~~~--- 75 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG--YEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE-FKEKNVVLDGHLS--- 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-ccCCCEEEEeccc---
Confidence 589999999999999999999998 6667776653211 11 1 11222233222 2356799999421
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 92 ~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
. +...+. +++|+++.+++.+|+..|..
T Consensus 76 ---~---l~~~~~---vi~L~~~~~~~~~Rl~~R~~ 102 (180)
T PRK03839 76 ---H---LLPVDY---VIVLRAHPKIIKERLKERGY 102 (180)
T ss_pred ---c---ccCCCE---EEEEECCHHHHHHHHHHcCC
Confidence 1 122232 78999999999999998853
No 104
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=98.73 E-value=6.2e-08 Score=92.86 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=84.8
Q ss_pred EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCcEEEecCCCCCCCC
Q 006654 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLPSTSPLC 421 (636)
Q Consensus 344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~--~~~~~G~avvT~l~~~~~~~ 421 (636)
.+..++|||++... ...++|||++|..+. +|+|||.+|.++.+ ++.++.++.. +..+.|++.+.+. .
T Consensus 2 ~i~~v~GDl~~~~~---~~~~~i~h~~N~~g~-mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~------~ 70 (154)
T PHA02595 2 IVDYIKGDIVALFL---QGKGNIAHGCNCFHT-MGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEK------Y 70 (154)
T ss_pred eEEEECCccccccc---CCCceEEEeeCCCCc-CChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEe------e
Confidence 37789999988731 125699999999999 99999999999995 5666655542 4567899977431 1
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH------HHhhccccCCCCC
Q 006654 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF------LSIVRSQEKLSKG 480 (636)
Q Consensus 422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a------~siaf~~~~~~~~ 480 (636)
+..+-++|+|..+- |+...+ -..+.|++|++++.+.+ .|||+|.||.+.+
T Consensus 71 ~~~~~~~I~nl~tq-~~~~~~--------~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~Glg 126 (154)
T PHA02595 71 VGGHKAYCFNLYTQ-FDPGPN--------LEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIA 126 (154)
T ss_pred ccCCCEEEEEEecc-CCCCCC--------CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCC
Confidence 22334799999776 755432 12567888888887765 5899999997743
No 105
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.72 E-value=1.8e-08 Score=98.09 Aligned_cols=133 Identities=20% Similarity=0.364 Sum_probs=98.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCCC-----------CcHHHHHHHHHHHHh---------
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS-----------GTKVQCLTSASSALK--------- 76 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~~-----------~~~~~~~~~~~~~L~--------- 76 (636)
.++.++|.|+||||||++++.-... +...|++-|++.-... +..+-.++.+..+..
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv 81 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV 81 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence 3688999999999999999864322 2245667777752211 111112233333333
Q ss_pred ----------CCCe-EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 006654 77 ----------KGKS-VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (636)
Q Consensus 77 ----------~G~~-VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm 144 (636)
.|+. +++|+..+.+..|..+.++ +.+|+.+-.||+......|++|+..|.... ..+.++++.|
T Consensus 82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda~-----k~~~dtiRki 156 (291)
T KOG4622|consen 82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDAE-----KQKNDTIRKI 156 (291)
T ss_pred eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccch-----hCccHHHHHH
Confidence 2333 6778878888999999999 999999999999999999999999998743 4778999999
Q ss_pred HhhhcCCCccCCcc
Q 006654 145 LQKKELPKLSEGFS 158 (636)
Q Consensus 145 ~~~fe~P~~~Egfd 158 (636)
.+++|.|...|.|.
T Consensus 157 ~EklE~PD~~ea~e 170 (291)
T KOG4622|consen 157 FEKLEDPDEIEALE 170 (291)
T ss_pred HHhccCccHHHHHH
Confidence 99999999877663
No 106
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.70 E-value=1.6e-07 Score=90.63 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=64.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc----------H---HHHHHHHHHHHhCCCeEEEeCC-
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT----------K---VQCLTSASSALKKGKSVFLDRC- 86 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~----------~---~~~~~~~~~~L~~G~~VIID~t- 86 (636)
..|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+. + ......+.+.+..+..||.-+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg--~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG--YRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 4588999999999999999999998 5567887765322211 1 1112333345555444444332
Q ss_pred -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 87 -n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
.+....|..+ +..+. +|||++|.+++.+|+..|..
T Consensus 81 ~vl~~~~~~~l---~~~~~---~v~l~~~~~~~~~Rl~~r~~ 116 (171)
T PRK03731 81 IILTEENRHFM---RNNGI---VIYLCAPVSVLANRLEANPE 116 (171)
T ss_pred ccCCHHHHHHH---HhCCE---EEEEECCHHHHHHHHccccc
Confidence 3445555433 33343 88999999999999998754
No 107
>PRK08356 hypothetical protein; Provisional
Probab=98.70 E-value=5.3e-07 Score=89.28 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=66.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-h----cCC-----C-------C----Cc---H----------H
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-I----NKG-----K-------S----GT---K----------V 65 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-i----r~~-----~-------~----~~---~----------~ 65 (636)
..+|+++|+|||||||+|+.|. +++ +.+|+..+ + +.. + . .. + .
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g--~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKG--FCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCC--CcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 3578999999999999999995 566 55666532 1 111 0 0 00 0 1
Q ss_pred HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+.+.+.+.....|++|+. .+..++..+... + ..+|++++|.+++.+|+..|..
T Consensus 82 ~~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~---~--~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 82 ILIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM---G--GKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred HHHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhc---C--CEEEEEECCHHHHHHHHHhcCC
Confidence 112344455544557999997 888888776433 1 1478999999999999999875
No 108
>PRK06696 uridine kinase; Validated
Probab=98.68 E-value=1.8e-07 Score=94.67 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=66.4
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC-----------CC------cHHHHHHHHHHHH-
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----------SG------TKVQCLTSASSAL- 75 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~-----------~~------~~~~~~~~~~~~L- 75 (636)
.+.|.+|.+.|+|||||||+|++|++.+ +..+.+++.|.+...+ .+ .+..+...+...+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 4578999999999999999999999988 4456777887774221 00 0111111111111
Q ss_pred ---------------------------hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 ---------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 ---------------------------~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+..||+|+..+.......+.+ ..|++++|.+++.+|...|..
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d--------~~i~v~~~~e~~~~R~~~Rd~ 169 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWD--------YKIFLDTDFEVSRRRGAKRDT 169 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCC--------EEEEEECCHHHHHHHHHHhhh
Confidence 11234777885544333322222 378999999999999999974
No 109
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.68 E-value=2.7e-07 Score=92.01 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=72.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC--------------------C--cH------------
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------------------G--TK------------ 64 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~--------------------~--~~------------ 64 (636)
.+.+|++.|+|||||||+|+.|+.+++.. ..+..|.+|+... + ..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~ 80 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAID-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQAR 80 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCe-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHH
Confidence 46799999999999999999999998832 3566676652100 0 00
Q ss_pred ---HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeC-CHHHHHHHHHhccccc
Q 006654 65 ---VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEHE 129 (636)
Q Consensus 65 ---~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~-p~e~l~~R~~~R~~~~ 129 (636)
..+...+.+.+.+|.++|+|++++.+..+... ...+ +.++++.+ +.+++.+|+..|....
T Consensus 81 ~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~---~~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~ 144 (197)
T PRK12339 81 AIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN---RTNN--IRAFYLYIRDAELHRSRLADRINYT 144 (197)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH---HhcC--eEEEEEEeCCHHHHHHHHHHHhhcc
Confidence 01224567788999999999999888777432 1122 23445544 6788889999998653
No 110
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.68 E-value=5.9e-07 Score=87.24 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=66.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCC--eEEeeh------------------hhhc----CCCCCcH-------HHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ------------------DTIN----KGKSGTK-------VQCLT 69 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is~------------------D~ir----~~~~~~~-------~~~~~ 69 (636)
.+++++|+|||||||+++.|+..++.. ..++.. +.+. .+.+... .-...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 478999999999999999998876521 111111 1110 1101000 00112
Q ss_pred HHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 70 ~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
.+...+..|..||+|+. ...+..+.+. ...+.+|+|++|.+++.+|+..|.. ..++.+..++.+
T Consensus 82 ~i~~~~~~g~~vv~~g~---~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~R~~-------~~~~~~~~rl~~ 145 (179)
T TIGR02322 82 EIDQWLEAGDVVVVNGS---RAVLPEARQR---YPNLLVVNITASPDVLAQRLAARGR-------ESREEIEERLAR 145 (179)
T ss_pred HHHHHHhcCCEEEEECC---HHHHHHHHHH---CCCcEEEEEECCHHHHHHHHHHcCC-------CCHHHHHHHHHH
Confidence 34456678889999984 2222222222 1134688999999999999999854 234455555543
No 111
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.65 E-value=1.5e-07 Score=94.24 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=69.6
Q ss_pred ccccCccEEEEEEccCCCcHHHHHHHHHHHcCCC--------------------eEEeehhhhc----CCCCCcH----H
Q 006654 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------------------WARICQDTIN----KGKSGTK----V 65 (636)
Q Consensus 14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--------------------~~~Is~D~ir----~~~~~~~----~ 65 (636)
+..+..+.+|+|+|||||||||+++.|.+..... +..++.+.+. .+.+..+ .
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g 86 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYG 86 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcC
Confidence 3467789999999999999999999997643210 1111222211 1111100 0
Q ss_pred ----HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHH
Q 006654 66 ----QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (636)
Q Consensus 66 ----~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~L-d~p~e~l~~R~~~R~~~~~~~~~~vp~ev 140 (636)
.-...+...+++|+.+|+|... ..+.. +++....+.++++ .++.+++.+|+..|..+ ...++
T Consensus 87 ~~YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~---l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~-------~~~~~ 153 (206)
T PRK14738 87 NYYGVPKAPVRQALASGRDVIVKVDV---QGAAS---IKRLVPEAVFIFLAPPSMDELTRRLELRRTE-------SPEEL 153 (206)
T ss_pred ceecCCHHHHHHHHHcCCcEEEEcCH---HHHHH---HHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC-------CHHHH
Confidence 0114567788999999998722 22222 2222223333333 35577899999998753 23455
Q ss_pred HHHHHhhh
Q 006654 141 VNRMLQKK 148 (636)
Q Consensus 141 i~rm~~~f 148 (636)
.+++...+
T Consensus 154 ~~Rl~~~~ 161 (206)
T PRK14738 154 ERRLATAP 161 (206)
T ss_pred HHHHHHHH
Confidence 56665544
No 112
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.63 E-value=7.2e-07 Score=89.03 Aligned_cols=119 Identities=26% Similarity=0.370 Sum_probs=74.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC-CCeEEeehhhhcCCC------------CC-----cHHHHHHHHHHHHhCC-
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGK------------SG-----TKVQCLTSASSALKKG- 78 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~Is~D~ir~~~------------~~-----~~~~~~~~~~~~L~~G- 78 (636)
.++.+|.|+|++|||||||++.|.+.++ ..+..+++|.+.... .. ....+.+.+ ..+..|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~ 82 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHL-KALKAGK 82 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHH-HHHHcCC
Confidence 4688999999999999999999999884 235667887764211 00 112222222 222222
Q ss_pred ------------------------CeEEEeCCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 006654 79 ------------------------KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (636)
Q Consensus 79 ------------------------~~VIID~tn~~~-~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~ 133 (636)
..+|+|+..+.. .....+.++ .|++++|.+++++|...|..+..
T Consensus 83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~--------~I~v~~~~~~~~~R~~~Rd~~~r--- 151 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDI--------KIFVDTPLDIRLIRRLKRDVNER--- 151 (209)
T ss_pred ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhce--------eEEEeCChhHHHHHHHhhcchhc---
Confidence 137778754432 222223222 78999999999999999975332
Q ss_pred CCChHHHHHHHHhhh
Q 006654 134 GGKAAAVVNRMLQKK 148 (636)
Q Consensus 134 ~~vp~evi~rm~~~f 148 (636)
+...++++.++.++.
T Consensus 152 g~~~e~~~~~~~~~~ 166 (209)
T PRK05480 152 GRSLESVINQYLSTV 166 (209)
T ss_pred CCCHHHHHHHHHHhh
Confidence 135566666665543
No 113
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.63 E-value=8.7e-07 Score=85.95 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=61.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEE--------------------eehhhhc----CCCCC--------cHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTIN----KGKSG--------TKVQCL 68 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~--------------------Is~D~ir----~~~~~--------~~~~~~ 68 (636)
.+|+|+|++||||||+++.|++.++..+.. ++.+.+. .+... ......
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 478999999999999999999875421111 1111111 00000 001113
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 69 ~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+...+.+|+.+|+|.. ...+..+ ...+..+.++++..+.+.+.+|+..|..
T Consensus 82 ~~i~~~~~~g~~vi~d~~------~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~ 135 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEID------VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGT 135 (180)
T ss_pred HHHHHHHHCCCeEEEECC------HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC
Confidence 557788899999999973 2222233 3333334455557788999999998865
No 114
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.60 E-value=5.2e-08 Score=90.72 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=60.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC----------CcHHHHHHHHHHHHhCCCeEEEeCCCCCHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------GTKVQCLTSASSALKKGKSVFLDRCNLERE 91 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~----------~~~~~~~~~~~~~L~~G~~VIID~tn~~~~ 91 (636)
+|+++|+|||||||+|+.|++.++ +.+++.|.+..... ......+......+..+..+|+|+......
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~--~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~ 78 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG--LPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV 78 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE
Confidence 478999999999999999999998 44567664432110 011111223333355556799999432110
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 92 ~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..... ..+|+|.+|.++..+|+.+|..
T Consensus 79 ------~~~~~---~~~i~l~~~~~~r~~R~~~r~~ 105 (147)
T cd02020 79 ------VFPDA---DLKIFLTASPEVRAKRRAKQLQ 105 (147)
T ss_pred ------EcCCC---CEEEEEECCHHHHHHHHHHHHH
Confidence 01111 1378999999999999999754
No 115
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=2.1e-07 Score=88.51 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=99.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---CCCc------HHHHHHHHHHHHhCCCeEEEeCCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSGT------KVQCLTSASSALKKGKSVFLDRCNLE 89 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---~~~~------~~~~~~~~~~~L~~G~~VIID~tn~~ 89 (636)
||.+.++.|+.||||||+...+...+...+..+|.|.+..+ +..+ .+.....+...++.|.+++.+.|--.
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~ 80 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG 80 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence 67899999999999999988766555545788999999633 1111 12234566677789999999986655
Q ss_pred HHHHHHHHHh-CCCCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHHHHHh-hhcC-CCccCCccEEEEeCC
Q 006654 90 REQRTDFVKL-GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ-KKEL-PKLSEGFSRITLCQN 165 (636)
Q Consensus 90 ~~~R~~l~~l-~~~g~~v~vV~Ld~p~-e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~-~fe~-P~~~Egfd~Viii~~ 165 (636)
...++ +++. +..|+-+...|+-++. |+.++|+..|-...|+ .+|++.+++-+. ..+. +...+-.++..+.++
T Consensus 81 ~s~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH---~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydN 156 (187)
T COG4185 81 PSILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGH---DIPEDKIRRRYRRSLELLAQALTLADRATIYDN 156 (187)
T ss_pred chHHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHHHHHHHhhcceeEEecC
Confidence 55554 4455 8889988777776654 6889999999887776 899988876554 3332 222333455555444
No 116
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=98.60 E-value=1.3e-08 Score=94.83 Aligned_cols=104 Identities=9% Similarity=0.037 Sum_probs=76.4
Q ss_pred ccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhh
Q 006654 189 SFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVN 268 (636)
Q Consensus 189 c~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l 268 (636)
..+. +++..++.++++-+.+.+. ..+|.. . .|.+.++.|.+..|.+.+..+. ....+.+..++.+|+
T Consensus 30 Gva~-ai~~~~G~~~~~~~~~~~~-~~~G~~-~--------~t~~~~l~~k~Iih~~~~~~~~--~~~~~~l~~~~~~~l 96 (133)
T cd03330 30 GVAG-AIKRAGGSVIEREAVRKAP-IPVGEA-V--------ITGAGDLPARYVIHAATMEEPG--RSSEESVRKATRAAL 96 (133)
T ss_pred cHHH-HHHHHhCHHHHHHHHHcCC-CCCCeE-E--------EEeCCCCCCCEEEEeCCCCCCC--CCHHHHHHHHHHHHH
Confidence 3444 6777777777776665543 334541 1 1344566677777776554433 333457888999999
Q ss_pred cccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654 269 QNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (636)
Q Consensus 269 ~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~ 305 (636)
..+++++++|||||+|+||++|||.++|+++|.++++
T Consensus 97 ~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i~ 133 (133)
T cd03330 97 ALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVIE 133 (133)
T ss_pred HHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999873
No 117
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.59 E-value=8.9e-07 Score=86.37 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=81.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh-------hhhc---CCC----CCcH-H---------H-HHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN---KGK----SGTK-V---------Q-CLTSAS 72 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~-------D~ir---~~~----~~~~-~---------~-~~~~~~ 72 (636)
.+|++.|++||||||+++.|++.+ |..+..+.. ..++ ... .... . . ....+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999887 322322221 1221 111 1111 0 0 112233
Q ss_pred HHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHH
Q 006654 73 SALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA 139 (636)
Q Consensus 73 ~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~e 139 (636)
..+..|..||+|...+.. .....+..+ .....+..+++|++|.+++.+|+..|...... .....+
T Consensus 81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~ 158 (200)
T cd01672 81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD--EQEGLE 158 (200)
T ss_pred HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--hhhhHH
Confidence 456788899999644332 222223333 33223446899999999999999999763210 022344
Q ss_pred HHHHHHhhhcCCCccCCccEEEEeCChhHHHHHHH
Q 006654 140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD 174 (636)
Q Consensus 140 vi~rm~~~fe~P~~~Egfd~Viii~~~~~vdaiv~ 174 (636)
..+++...++......+. .+.+++....++.+..
T Consensus 159 ~~~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~ 192 (200)
T cd01672 159 FHERVREGYLELAAQEPE-RIIVIDASQPLEEVLA 192 (200)
T ss_pred HHHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence 444444444332211122 3445555444554443
No 118
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.59 E-value=4.2e-07 Score=89.22 Aligned_cols=133 Identities=12% Similarity=0.146 Sum_probs=75.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCe--EEee-------------------hhhhc----CCCCCc--------HHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPW--ARIC-------------------QDTIN----KGKSGT--------KVQ 66 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~--~~Is-------------------~D~ir----~~~~~~--------~~~ 66 (636)
+++|+|+||+||||+|+++.|.+.++..+ ++.. .+.+. .+.+.. .-.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 46899999999999999999998863112 1111 11110 110000 001
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~ 145 (636)
....+.+.+..|+.+|+|.. ...+..+++......+|++. .+.+++.+|+..|.. ..++.+-+|+.
T Consensus 82 ~~~~i~~~~~~~~~~ild~~------~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~-------~~~~~i~~rl~ 148 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDID------PQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGT-------ETAERIQKRLA 148 (184)
T ss_pred CHHHHHHHHHcCCeEEEEEC------HHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHHHHH
Confidence 12456777888999999994 22223331112334577886 556779999998865 23444555555
Q ss_pred hhhcCCCccCCccEEEEeCC
Q 006654 146 QKKELPKLSEGFSRITLCQN 165 (636)
Q Consensus 146 ~~fe~P~~~Egfd~Viii~~ 165 (636)
........+..|+.++..++
T Consensus 149 ~a~~~~~~~~~fd~~I~n~~ 168 (184)
T smart00072 149 AAQKEAQEYHLFDYVIVNDD 168 (184)
T ss_pred HHHHHHhhhccCCEEEECcC
Confidence 32222222345777655443
No 119
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.58 E-value=1.1e-07 Score=85.97 Aligned_cols=94 Identities=27% Similarity=0.394 Sum_probs=54.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-c-CCCC----Cc---HH---HHHHHHHHHHh---CCCeEEEeCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-KGKS----GT---KV---QCLTSASSALK---KGKSVFLDRC 86 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r-~~~~----~~---~~---~~~~~~~~~L~---~G~~VIID~t 86 (636)
+|+++|+|||||||+|+.|++.++ +.+++.|++ . ..+. .. .. .........+. .+..+|+|+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~ 78 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG--FPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGS 78 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--CEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC--CeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCC
Confidence 589999999999999999999998 677787774 2 1111 11 11 12233333332 4567999994
Q ss_pred CCCHHH--HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 87 NLEREQ--RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 87 n~~~~~--R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
.. ... +..+. ..++++..|.+.+..|..+|.
T Consensus 79 ~~-~~~~~~~~~~--------~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 79 YE-SEMEIRLPEF--------DHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp SC-HCCHSCCHHG--------GCEEEEEEEEHHHHHHHHHHH
T ss_pred Cc-cchhhhhhcC--------CEEEEEECCCHHHHHHHHHHH
Confidence 32 211 11111 136777777765555555553
No 120
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.57 E-value=6.2e-07 Score=88.90 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=62.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEE--------------------eehhhhcC----CCC-------Cc-HHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTINK----GKS-------GT-KVQ 66 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~--------------------Is~D~ir~----~~~-------~~-~~~ 66 (636)
+..+|+|+|++||||||+++.|+..++..+.. ++.+.+.. +.+ +. ...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 56789999999999999999999886511111 11111110 000 00 001
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
....+...+..|..+|+|... .....+.+. .+..+.++++..+.+++.+|+..|..
T Consensus 84 ~~~~i~~~l~~g~~vi~dl~~---~g~~~l~~~--~~~~~~I~i~~~s~~~l~~Rl~~R~~ 139 (205)
T PRK00300 84 PRSPVEEALAAGKDVLLEIDW---QGARQVKKK--MPDAVSIFILPPSLEELERRLRGRGT 139 (205)
T ss_pred cHHHHHHHHHcCCeEEEeCCH---HHHHHHHHh--CCCcEEEEEECcCHHHHHHHHHhcCC
Confidence 135577888999999999732 222222222 22233455556778999999999865
No 121
>PRK08233 hypothetical protein; Provisional
Probab=98.56 E-value=3.4e-07 Score=88.59 Aligned_cols=97 Identities=12% Similarity=0.209 Sum_probs=57.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCC--------CC---C-----cHHHHHHHHHHHHhCC--Ce
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKG--------KS---G-----TKVQCLTSASSALKKG--KS 80 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~--------~~---~-----~~~~~~~~~~~~L~~G--~~ 80 (636)
+.+|++.|+|||||||+|+.|++.++. ...+.+ .++.. +. . ....+...+...+... ..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFD--RYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDY 80 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC--CEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceE
Confidence 578999999999999999999998862 233333 33211 10 0 1112223444434333 23
Q ss_pred EEEeCCCCCHH--HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 81 VFLDRCNLERE--QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 81 VIID~tn~~~~--~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
||+|+ ++... ....+.+ .+|+|++|.+++.+|...|..
T Consensus 81 vivd~-~~~~~~~~~~~~~d--------~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 81 IIVDY-PFAYLNSEMRQFID--------VTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred EEEee-ehhhccHHHHHHcC--------EEEEEcCCHHHHHHHHHHHHh
Confidence 55565 43321 1222212 388999999999999888864
No 122
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.55 E-value=5.6e-07 Score=95.67 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=72.4
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHH-HHHHHHHhCCCe
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCL-TSASSALKKGKS 80 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~-~~~~~~L~~G~~ 80 (636)
.+..+...|+|+|+|||||||+++.|++.++.++ ++.|.......+. ..... ..+.+.+.....
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~--id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~ 205 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPF--VELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEE 205 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCE--EeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCC
Confidence 4556778899999999999999999999999544 5766654322221 01111 223333443334
Q ss_pred EEEeCC-C--CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654 81 VFLDRC-N--LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 81 VIID~t-n--~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f 148 (636)
+||... . .....+. .+...+ .+|||++|.+++.+|+..|..........-..+.++.+++..
T Consensus 206 ~VI~~Ggg~v~~~~~~~---~l~~~~---~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 206 MVLATGGGIVSEPATFD---LLLSHC---YTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred EEEECCCchhCCHHHHH---HHHhCC---EEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence 555442 2 1222222 231222 488999999999999998864211011122334555555444
No 123
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.55 E-value=2.7e-07 Score=86.81 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=75.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC-----C-------CCcHHHHHHHHHHHHhCCCeEEEeC--C
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG-----K-------SGTKVQCLTSASSALKKGKSVFLDR--C 86 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~-----~-------~~~~~~~~~~~~~~L~~G~~VIID~--t 86 (636)
-|+++|-||+||||+|.+|++.++.. +|+- |.++++ + ....+.+++.+...|..| +.|+|- |
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~--~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IVDyHgC 85 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLE--YIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIVDYHGC 85 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCc--eEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcC-CcEEeeccc
Confidence 47899999999999999999999944 4553 333221 1 112445677888888775 566776 3
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654 87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (636)
Q Consensus 87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~ 147 (636)
.+-+ ++|.++ +++|.+|.+.|.+|+..|+-+.......+..+++.-..+.
T Consensus 86 d~Fp---erwfdl--------VvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~ee 135 (176)
T KOG3347|consen 86 DFFP---ERWFDL--------VVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEE 135 (176)
T ss_pred Cccc---hhheeE--------EEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHH
Confidence 3332 345444 8899999999999999998754333334445555555543
No 124
>PTZ00301 uridine kinase; Provisional
Probab=98.54 E-value=1.4e-06 Score=87.76 Aligned_cols=132 Identities=19% Similarity=0.276 Sum_probs=77.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----CCC-eEEeehhhhcCCC------------CC-----cHHHHHHHHHHHHh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARP-WARICQDTINKGK------------SG-----TKVQCLTSASSALK 76 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~-~~~Is~D~ir~~~------------~~-----~~~~~~~~~~~~L~ 76 (636)
++.+|.+.|+|||||||||+.|++.+ +.. ...++.|.+.... +. ....+.+.+ ..|+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~ 80 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELK 80 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHH
Confidence 45789999999999999999988665 322 3467777774211 01 122222333 4444
Q ss_pred CC-------------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 006654 77 KG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (636)
Q Consensus 77 ~G-------------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~ 131 (636)
+| .-+|++|...... ..+.++ .+. .+|+++|.+++..|...|.....+
T Consensus 81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l--~D~---~ifvd~~~d~~~~Rr~~Rd~~~rG 153 (210)
T PTZ00301 81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNE--MDC---LIFVDTPLDICLIRRAKRDMRERG 153 (210)
T ss_pred cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHh--CCE---EEEEeCChhHHHHHHHhhhHHhcC
Confidence 43 1367788544211 122222 122 589999999999999999875432
Q ss_pred CCCCChHHHHHHHHh-------hhcCCCccCCccEEEEe
Q 006654 132 LQGGKAAAVVNRMLQ-------KKELPKLSEGFSRITLC 163 (636)
Q Consensus 132 ~~~~vp~evi~rm~~-------~fe~P~~~Egfd~Viii 163 (636)
..++.++.++.. .|..|.. ...++++-
T Consensus 154 ---~~~e~v~~~~~~~v~~~~~~~I~p~k--~~ADiIi~ 187 (210)
T PTZ00301 154 ---RTFESVIEQYEATVRPMYYAYVEPSK--VYADIIVP 187 (210)
T ss_pred ---CCHHHHHHHHHHhhcccHHHHcCccc--cCCcEEEc
Confidence 345666654443 3556653 23455443
No 125
>PRK04182 cytidylate kinase; Provisional
Probab=98.53 E-value=1.2e-06 Score=84.43 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=59.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC--CCCC-------------c-HHHHHHHHHHHHh-CCCeEEE
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK--GKSG-------------T-KVQCLTSASSALK-KGKSVFL 83 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~--~~~~-------------~-~~~~~~~~~~~L~-~G~~VII 83 (636)
+|+|+|+|||||||+|+.|++.++ +.+++.|++ +. ...+ . ...........+. .+.++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg--~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 79 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG--LKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVL 79 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999998 556775443 21 0001 0 0111122222333 5667888
Q ss_pred eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
|+... .| + ... ....|+|++|.+++.+|+..|..
T Consensus 80 ~g~~~------~~--~~~~~--~~~~V~l~a~~e~~~~Rl~~r~~ 114 (180)
T PRK04182 80 EGRLA------GW--MAKDY--ADLKIWLKAPLEVRAERIAEREG 114 (180)
T ss_pred EEeec------ce--EecCC--CCEEEEEECCHHHHHHHHHhccC
Confidence 88321 11 2 211 23478999999999999998864
No 126
>PRK12338 hypothetical protein; Provisional
Probab=98.52 E-value=1.4e-06 Score=92.48 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=73.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe-ehhhhcCCCCC------------c----H-----------------
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-CQDTINKGKSG------------T----K----------------- 64 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I-s~D~ir~~~~~------------~----~----------------- 64 (636)
+|.+|++.|+|||||||+|+.|++.++ +.++ +.|.++.-..+ . |
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~--~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~ 80 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN--IKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC 80 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC--CeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence 578999999999999999999999998 4445 66666421000 0 0
Q ss_pred ----HHH-------HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 65 ----VQC-------LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 65 ----~~~-------~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.++ ...+.++++.|.++||+|..+.+...... . ......+.++++..+.+..++|...|...
T Consensus 81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~-~-~~~~~~v~~~vl~~dee~h~~Rf~~R~~~ 153 (319)
T PRK12338 81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE-Q-FEENASIHFFILSADEEVHKERFVKRAME 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh-h-hcccCceEEEEEECCHHHHHHHHHHhhhc
Confidence 011 13445567788999999998888655432 1 11223456667778889999999998864
No 127
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.52 E-value=6.4e-07 Score=88.84 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=68.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC--------------C--------C--c------------
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------S--------G--T------------ 63 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~--------------~--------~--~------------ 63 (636)
+.+|.|+|++||||||+++.|.+ +| +.+++.|.+.... + + .
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~ 78 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDP 78 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCH
Confidence 46899999999999999999988 77 6778877763110 0 1 0
Q ss_pred ----------HHHHHHHHHHHHhCC---CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 64 ----------KVQCLTSASSALKKG---KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 64 ----------~~~~~~~~~~~L~~G---~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
+..+...+.+.+... ..+|+|..-+.......+ .+ .++++.+|.++..+|+.+|..
T Consensus 79 ~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~-----~D---~vi~V~a~~e~~~~Rl~~R~~--- 147 (194)
T PRK00081 79 EARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKL-----VD---RVLVVDAPPETQLERLMARDG--- 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhh-----CC---eEEEEECCHHHHHHHHHHcCC---
Confidence 001113333333332 467888843333222222 11 378899999999999999854
Q ss_pred CCCCCChHHHHHHHHhhh
Q 006654 131 NLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 131 ~~~~~vp~evi~rm~~~f 148 (636)
...+++..++..++
T Consensus 148 ----~s~e~~~~ri~~Q~ 161 (194)
T PRK00081 148 ----LSEEEAEAIIASQM 161 (194)
T ss_pred ----CCHHHHHHHHHHhC
Confidence 23345556665543
No 128
>PRK04040 adenylate kinase; Provisional
Probab=98.52 E-value=1.6e-06 Score=85.86 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=58.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc------CCCCCcH-----------HHHHHHHHHH---HhCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSGTK-----------VQCLTSASSA---LKKG 78 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir------~~~~~~~-----------~~~~~~~~~~---L~~G 78 (636)
+|.+|+++|+|||||||+++.|++.++..+.+++.+.+. .+...+. ......+.+. +..+
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~ 80 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGE 80 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcC
Confidence 467899999999999999999999983125556655542 1111111 1111223322 3445
Q ss_pred CeEEEeCC--------CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 79 KSVFLDRC--------NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 79 ~~VIID~t--------n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
..+|+|+- .+....+.-+..+ . +-.+++|.+|.++..+|...
T Consensus 81 ~~~~~~~h~~i~~~~g~~~~~~~~~~~~l---~-pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 81 GPVIVDTHATIKTPAGYLPGLPEWVLEEL---N-PDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred CCEEEeeeeeeccCCCCcCCCCHHHHhhc---C-CCEEEEEeCCHHHHHHHHhc
Confidence 66999991 1111122222222 1 22467888888887777664
No 129
>PRK13975 thymidylate kinase; Provisional
Probab=98.52 E-value=1.5e-06 Score=85.51 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=60.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-----hcC----CCCCc----------HHHHHHHHHHHHhCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-----INK----GKSGT----------KVQCLTSASSALKKGK 79 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-----ir~----~~~~~----------~~~~~~~~~~~L~~G~ 79 (636)
|..+|++.|++||||||+++.|++.++..+.....|. +++ ..... ..+.+..+...+.. .
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~ 79 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-R 79 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 3578999999999999999999999873222222211 111 10010 01112333444444 6
Q ss_pred eEEEeCCCCCHHHH-------HHHH-Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 80 SVFLDRCNLEREQR-------TDFV-KL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 80 ~VIID~tn~~~~~R-------~~l~-~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
.||+|...+..-.. ..|. .+ .....+-.+++|++|.+++.+|+..|.
T Consensus 80 ~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 80 DVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred EEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 78999743321000 0111 11 111112258899999999999999886
No 130
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=5.2e-07 Score=86.13 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=62.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---CCC--------------cHHHHH-HHHHHHHhCCCeEEE
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSG--------------TKVQCL-TSASSALKKGKSVFL 83 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---~~~--------------~~~~~~-~~~~~~L~~G~~VII 83 (636)
+|.+.|+|||||||+|+.|++.+| +.+++...++.+ ..+ ..+..+ +...+... ..++|+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVl 78 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVL 78 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEE
Confidence 578999999999999999999999 677886444321 111 111222 23333334 567898
Q ss_pred eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
++ .-..|+- + .+.-..|||..|.++-.+|++.|..
T Consensus 79 eg------rLA~Wi~-k--~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 79 EG------RLAGWIV-R--EYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred hh------hhHHHHh-c--cccceEEEEeCcHHHHHHHHHHhcC
Confidence 88 2233322 2 1222368999999999999999986
No 131
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.50 E-value=1.5e-07 Score=90.12 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEeC---CCCCHHH
Q 006654 29 PGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR---CNLEREQ 92 (636)
Q Consensus 29 PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID~---tn~~~~~ 92 (636)
|||||||+++.|++.++ +..+|.|.+.....+. +......+...+....+.||.. .....+.
T Consensus 1 ~GsGKStvg~~lA~~L~--~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~ 78 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG--RPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEEN 78 (158)
T ss_dssp TTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred CCCcHHHHHHHHHHHhC--CCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence 79999999999999999 6668888875433331 1223344444444443555555 5566666
Q ss_pred HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 93 R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
+..+. +.+. +|||+.+.+.+.+|+..+..+|
T Consensus 79 ~~~L~---~~g~---vI~L~~~~~~l~~Rl~~~~~Rp 109 (158)
T PF01202_consen 79 RELLK---ENGL---VIYLDADPEELAERLRARDNRP 109 (158)
T ss_dssp HHHHH---HHSE---EEEEE--HHHHHHHHHHHCTSG
T ss_pred HHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCCC
Confidence 66653 2333 8999999999999998887744
No 132
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.47 E-value=7.6e-07 Score=85.96 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=60.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------CCCc----HHHHHHHHHHHHhCCCeEEEeCCCCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------KSGT----KVQCLTSASSALKKGKSVFLDRCNLE 89 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------~~~~----~~~~~~~~~~~L~~G~~VIID~tn~~ 89 (636)
+|++.|.||.||||+|+.|. .++..+.+++ +..... ...+ .+.+...+...+ ...+.|+|+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~-el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-~~~~~Ivd~---- 74 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN-ELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL-REGSGIVDS---- 74 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH-HHHHhcCCeeccCCccceEEeeHHHHHHHHHHHh-ccCCeEeec----
Confidence 68999999999999999999 8884444444 322211 1111 122223333333 446788898
Q ss_pred HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 90 ~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
.+.-+ .... .+|+|.++.+.+.+|+..|+-.+.
T Consensus 75 -----H~~hl~~~~d---lVvVLR~~p~~L~~RLk~RGy~~e 108 (180)
T COG1936 75 -----HLSHLLPDCD---LVVVLRADPEVLYERLKGRGYSEE 108 (180)
T ss_pred -----hhhhcCCCCC---EEEEEcCCHHHHHHHHHHcCCCHH
Confidence 22223 2222 388999999999999999987543
No 133
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.46 E-value=8.4e-07 Score=87.71 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=29.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
+|.+.|+|||||||+|+.|++.++ .+.+|+.|.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~-~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP-NCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CCeEEcccccc
Confidence 478999999999999999999984 26678888774
No 134
>PRK13973 thymidylate kinase; Provisional
Probab=98.46 E-value=5.9e-06 Score=83.14 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=67.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEee-------hhhhcC----C---CCCcH-----------HHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC-------QDTINK----G---KSGTK-----------VQCLTSA 71 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is-------~D~ir~----~---~~~~~-----------~~~~~~~ 71 (636)
..+|++-|++||||||+++.|++.+ |..+..+. .+.+|+ . ..... +.+...+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i 82 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVI 82 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987 43332231 123321 1 11111 1122456
Q ss_pred HHHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 72 SSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 72 ~~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+|.+|..||.|..-++. .+...+... .....+=.+++|++|.+++.+|+.+|..
T Consensus 83 ~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~ 151 (213)
T PRK13973 83 RPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG 151 (213)
T ss_pred HHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence 6788899999999955222 122222222 1111233689999999999999999964
No 135
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.45 E-value=2.3e-06 Score=86.05 Aligned_cols=132 Identities=23% Similarity=0.322 Sum_probs=82.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCCCCC-----------------cHHHHHHHHHHHHhCC-
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGKSG-----------------TKVQCLTSASSALKKG- 78 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~~~~-----------------~~~~~~~~~~~~L~~G- 78 (636)
.++.+|-+.|++||||||+|+.|.+.++. ....|++|.+...... .+ .++..-...|.+|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~-dLl~~~L~~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDL-DLLIEHLKDLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcH-HHHHHHHHHHHcCC
Confidence 35689999999999999999999999983 3467898888532110 11 1222223334433
Q ss_pred ------------------------CeEEEeCCCCCHHHH-HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 006654 79 ------------------------KSVFLDRCNLEREQR-TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133 (636)
Q Consensus 79 ------------------------~~VIID~tn~~~~~R-~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~ 133 (636)
+-|||+|...-...| ..+.++ -||+++|.+++..|...|.....+
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~--------kIfvdtd~D~RliRri~RD~~~rg-- 154 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDL--------KIFVDTDADVRLIRRIKRDVQERG-- 154 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCE--------EEEEeCCccHHHHHHHHHHHHHhC--
Confidence 237778865433322 223222 679999999999999988865332
Q ss_pred CCChHHHHHH-------HHhhhcCCCccCCccEEEEe
Q 006654 134 GGKAAAVVNR-------MLQKKELPKLSEGFSRITLC 163 (636)
Q Consensus 134 ~~vp~evi~r-------m~~~fe~P~~~Egfd~Viii 163 (636)
..++.++.+ |+.+|-+|. ..+.++++-
T Consensus 155 -~~~e~vi~qy~~~vkp~~~~fIept--k~~ADiiip 188 (218)
T COG0572 155 -RDLESVIEQYVKTVRPMYEQFIEPT--KKYADIIIP 188 (218)
T ss_pred -CCHHHHHHHHHHhhChhhhhccCcc--cccceEEee
Confidence 345555554 445566665 234555443
No 136
>PLN02199 shikimate kinase
Probab=98.44 E-value=2.3e-06 Score=89.76 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=65.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-CCc-------------HHHHHHHHHHHHhCCCeEEEeC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SGT-------------KVQCLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-~~~-------------~~~~~~~~~~~L~~G~~VIID~ 85 (636)
...|+|+|+|||||||+++.|++.++ +..||.|.+.+.. .+. +.+....+...+.....+||..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg--~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VISt 179 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG--YTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVST 179 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 45789999999999999999999998 5568888765432 121 1122334444444444556654
Q ss_pred ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
....+..|..+ + .|. +|||++|.+.+.+|+..
T Consensus 180 GGG~V~~~~n~~~L---~-~G~---vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 180 GGGAVIRPINWKYM---H-KGI---SIWLDVPLEALAHRIAA 214 (303)
T ss_pred CCcccCCHHHHHHH---h-CCe---EEEEECCHHHHHHHHhh
Confidence 34555555533 3 354 89999999999999985
No 137
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.44 E-value=8.8e-07 Score=84.80 Aligned_cols=95 Identities=22% Similarity=0.264 Sum_probs=60.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---CCC-c-------------HHHHH-HHHHHHHhCCCeEEE
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSG-T-------------KVQCL-TSASSALKKGKSVFL 83 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---~~~-~-------------~~~~~-~~~~~~L~~G~~VII 83 (636)
+|++.|+|||||||+|+.|++.++ +.+++.|.+... ..+ . ....+ ..+......+..+|+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi 79 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS--LKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVL 79 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999998 566887543211 000 0 01111 222223335667899
Q ss_pred eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
|+.... | .+... .. ..|++.+|.+++.+|+.+|..
T Consensus 80 ~g~~~~------~-~~~~~-~d-~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 80 ESRLAG------W-IVREY-AD-VKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred Eecccc------e-eecCC-cC-EEEEEECCHHHHHHHHHHccC
Confidence 984321 1 01111 11 368999999999999999965
No 138
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.43 E-value=2.3e-06 Score=84.41 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=63.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh-----------hhhcC--CCCCcHH-----------HHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----------DTINK--GKSGTKV-----------QCLTSAS 72 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~-----------D~ir~--~~~~~~~-----------~~~~~~~ 72 (636)
..+|++.|++||||||+++.|++.+. ..+..... ..+.. .....+. .....+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~ 82 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK 82 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999998753 11221110 11111 1111111 1113344
Q ss_pred HHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 73 SALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 73 ~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+..|..||+|...+.. .+-..+... .....+-.+|+|++|.+++.+|+.+|..
T Consensus 83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~ 150 (205)
T PRK00698 83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGE 150 (205)
T ss_pred HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 566789999999633332 111122222 2212233689999999999999999974
No 139
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.39 E-value=3e-06 Score=89.27 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=76.3
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC--------------------CCC------CcH-----
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKS------GTK----- 64 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~--------------------~~~------~~~----- 64 (636)
...+|.+|++.|++||||||+|.+|++.++.+ ..+++|.+++ .|. ...
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~ 166 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIY 166 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhh
Confidence 33578999999999999999999999999844 3678888861 111 000
Q ss_pred ---HH-------HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhccccc
Q 006654 65 ---VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE 129 (636)
Q Consensus 65 ---~~-------~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~ 129 (636)
.+ +...+.+++.+|.++|+.|.++.+.....+... . ..+..+++. .+.+...+|...|....
T Consensus 167 g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~--~-~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 167 GFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLE--N-PNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhc--C-CCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 01 225566778899999999999988765543211 1 123344555 45588899999998865
No 140
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.38 E-value=1.3e-06 Score=85.49 Aligned_cols=109 Identities=24% Similarity=0.250 Sum_probs=67.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC--------------CC--------c--H-------------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------SG--------T--K------------- 64 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~--------------~~--------~--~------------- 64 (636)
+|.|+|.|||||||+++.|.+ +| +.+++.|.+.... ++ . +
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 77 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG--IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC--CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence 478999999999999999998 77 6678877763210 00 0 0
Q ss_pred ---------HHHHHHHHHHHhC---CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 006654 65 ---------VQCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (636)
Q Consensus 65 ---------~~~~~~~~~~L~~---G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~ 132 (636)
..+...+.+.+.. ...+|+|..-+.......+.+ .++++++|.++..+|+..|..
T Consensus 78 ~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~D--------~vv~V~a~~~~ri~Rl~~Rd~----- 144 (179)
T cd02022 78 RKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLVD--------RVIVVDAPPEIQIERLMKRDG----- 144 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhCC--------eEEEEECCHHHHHHHHHHcCC-----
Confidence 0111222222222 235677763332222122211 278999999999999999965
Q ss_pred CCCChHHHHHHHHhhh
Q 006654 133 QGGKAAAVVNRMLQKK 148 (636)
Q Consensus 133 ~~~vp~evi~rm~~~f 148 (636)
...+++..++..++
T Consensus 145 --~s~~~~~~r~~~Q~ 158 (179)
T cd02022 145 --LSEEEAEARIASQM 158 (179)
T ss_pred --CCHHHHHHHHHhcC
Confidence 24467777777765
No 141
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.37 E-value=5.5e-06 Score=87.28 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=64.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHH-HhCCCeEEEeCCCCC--HHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA-LKKGKSVFLDRCNLE--REQRT 94 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~-L~~G~~VIID~tn~~--~~~R~ 94 (636)
.+..+|++.|++||||||+++.|.. .| +..++.-.. .....+...+... ....-.+++|..+.. ...+.
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g--~~~~d~~~~-----~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~ 75 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED-LG--YYCVDNLPP-----SLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPE 75 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH-cC--CeEECCcCH-----HHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHH
Confidence 4557899999999999999999964 45 444432110 0111222222211 112236888987542 23444
Q ss_pred HHHHhCCCCCeEEEEEEeCCHHHHHHHHHh-cccccC
Q 006654 95 DFVKLGGPEVDVHAVVLDLPAKLCISRSVK-RIEHEG 130 (636)
Q Consensus 95 ~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~-R~~~~~ 130 (636)
.+..++..+..+.+|||+++.+++.+|+.. |..|+.
T Consensus 76 ~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPL 112 (288)
T PRK05416 76 ALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPL 112 (288)
T ss_pred HHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCc
Confidence 455554447778889999999999999975 334543
No 142
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.37 E-value=3.6e-06 Score=84.08 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=63.3
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCC------------CCC---cH-HHHHHHHHHHHhCC-
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKG------------KSG---TK-VQCLTSASSALKKG- 78 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~------------~~~---~~-~~~~~~~~~~L~~G- 78 (636)
++++.+|.++|++|||||||++.|+..++. ....+++|.+... .+. .. ...+......|..|
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 456789999999999999999999987652 3456777665311 000 01 11222233334433
Q ss_pred ------------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 79 ------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 79 ------------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
..||+|+....... .+..+ .+ .+|++++|.+++..|...|...
T Consensus 83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~~~--~d---~~I~v~~~~~~~l~R~~~R~~~ 149 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLRDL--MD---LKIFVDTPLDIRLIRRIERDIN 149 (207)
T ss_pred CEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHHHh--CC---EEEEEECChhHHHHHHHHHHHH
Confidence 23667764332111 11111 12 3789999999999999998754
No 143
>PRK07667 uridine kinase; Provisional
Probab=98.37 E-value=3.1e-06 Score=83.83 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=64.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC--------CC------Cc-H--HHHHHHHHHHHhC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG--------KS------GT-K--VQCLTSASSALKK 77 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~--------~~------~~-~--~~~~~~~~~~L~~ 77 (636)
+.+.+|.|.|+|||||||+|+.|++.++ .+...++.|.+... .. .. + ..+...+...|+.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~ 94 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN 94 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence 4558999999999999999999998763 45667888775321 10 00 1 1111223233333
Q ss_pred C-------------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 78 G-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 78 G-------------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+ ..+|+|+..+.......+.+ .+|++++|.++..+|..+|..
T Consensus 95 ~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d--------~~v~V~~~~~~~~~R~~~r~~ 161 (193)
T PRK07667 95 ETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFH--------YMVYLDCPRETRFLRESEETQ 161 (193)
T ss_pred CCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhce--------EEEEEECCHHHHHHHHhcccH
Confidence 3 34677885543322222222 378999999999999998764
No 144
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.35 E-value=4.6e-06 Score=81.92 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=63.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeeh-------hhhcC----CC---CCc--H---------HHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-------DTINK----GK---SGT--K---------VQCLTSA 71 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~-------D~ir~----~~---~~~--~---------~~~~~~~ 71 (636)
..+|++.|+|||||||+++.|++.++. ....+.. +.++. .. ... . ......+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i 82 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKI 82 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988752 1222210 11111 10 110 0 0112345
Q ss_pred HHHHhCCCeEEEeCCCCCHH---------HHHHHHHh-CCC-C-CeEEEEEEeCCHHHHHHHHHhccc
Q 006654 72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGP-E-VDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 72 ~~~L~~G~~VIID~tn~~~~---------~R~~l~~l-~~~-g-~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+..|..||+|...++.. .+..+..+ ... . .+-.+|+|++|.+++.+|+..|..
T Consensus 83 ~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 83 KPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 56677888899997432221 01111111 111 1 123589999999999999999865
No 145
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.33 E-value=1.4e-05 Score=78.14 Aligned_cols=134 Identities=15% Similarity=0.255 Sum_probs=75.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeE-Eee--------------------hhhhc----CCCCCc--------HH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC--------------------QDTIN----KGKSGT--------KV 65 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is--------------------~D~ir----~~~~~~--------~~ 65 (636)
++++|+|+||+||||+|+++.|.+.++..+. .+. .+.+. .+.+-. .-
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 3568999999999999999999998763231 111 11110 000000 00
Q ss_pred HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 006654 66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNRM 144 (636)
Q Consensus 66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~-p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm 144 (636)
.....+...+..|+.+|+|. ....+..++..+....+|++.+ +.+.+.+|+..|.. ....++.+++
T Consensus 81 t~~~~i~~~~~~gk~~il~~------~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~-------~~~~~i~~r~ 147 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDV------DPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD-------ESEEEIEERL 147 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEE------THHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH-------CHHHHHHHHH
T ss_pred hccchhhHhhhcCCcEEEEc------cHHHHHHHHhcccCceEEEEEccchHHHHHHHhcccc-------ccHHHHHHHH
Confidence 01256677889999999997 2344444522255566777765 46888888877765 2233444443
Q ss_pred HhhhcCCCccCCccEEEEeCC
Q 006654 145 LQKKELPKLSEGFSRITLCQN 165 (636)
Q Consensus 145 ~~~fe~P~~~Egfd~Viii~~ 165 (636)
...-..-.....|+.++.-++
T Consensus 148 ~~~~~~~~~~~~fd~vi~n~~ 168 (183)
T PF00625_consen 148 ERAEKEFEHYNEFDYVIVNDD 168 (183)
T ss_dssp HHHHHHHGGGGGSSEEEECSS
T ss_pred HHHHHHHhHhhcCCEEEECcC
Confidence 332111111222888766443
No 146
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.33 E-value=3.2e-06 Score=84.02 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=30.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.+|.++|++||||||+++.|++.+| +.++|.|.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g--~~~i~~D~~~ 36 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG--IPILDADIYA 36 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC--CeEeeCcHHH
Confidence 4689999999999999999999888 6678887773
No 147
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.32 E-value=2.2e-06 Score=84.25 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=67.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-----C-----------------CCc----------------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-----K-----------------SGT---------------- 63 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-----~-----------------~~~---------------- 63 (636)
+|.++|.+||||||+++.|++..+ +.+++.|.+... . .|.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~ 78 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH--FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEE 78 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC--CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHH
Confidence 378999999999999999998865 667888777210 0 010
Q ss_pred --------HHHHHHHHHHHH----hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 006654 64 --------KVQCLTSASSAL----KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (636)
Q Consensus 64 --------~~~~~~~~~~~L----~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~ 131 (636)
+..+...+.+.+ ..|..||++...+.......+ .+ .++++++|.+++.+|+..|..
T Consensus 79 ~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-----~D---~vv~V~~~~~~~~~Rl~~R~~---- 146 (188)
T TIGR00152 79 LKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-----CD---RVIVVDVSPQLQLERLMQRDN---- 146 (188)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-----CC---EEEEEECCHHHHHHHHHHcCC----
Confidence 001112222222 234467777743332211112 11 278899999999999999974
Q ss_pred CCCCChHHHHHHHHhhh
Q 006654 132 LQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 132 ~~~~vp~evi~rm~~~f 148 (636)
...+++.+++..++
T Consensus 147 ---~s~~~~~~r~~~q~ 160 (188)
T TIGR00152 147 ---LTEEEVQKRLASQM 160 (188)
T ss_pred ---CCHHHHHHHHHhcC
Confidence 23466667776664
No 148
>PLN02924 thymidylate kinase
Probab=98.32 E-value=6.6e-06 Score=83.43 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=66.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEee-hh-------hhc----CC-CCCc----------HHHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-QD-------TIN----KG-KSGT----------KVQCLTS 70 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is-~D-------~ir----~~-~~~~----------~~~~~~~ 70 (636)
..+..+|++.|++||||||+++.|++.+.. ....+. .+ .++ .. .... +.+....
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~ 92 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL 92 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999988752 121111 00 111 11 0111 1112245
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHH-------HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 71 ASSALKKGKSVFLDRCNLEREQR-------TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 71 ~~~~L~~G~~VIID~tn~~~~~R-------~~l~~-l-~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
+..+|..|..||+|...++.-.. ..|.. + .....+=.+++|++|.+++.+|..
T Consensus 93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 67788899999999977643211 23333 2 222223368999999999999864
No 149
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.31 E-value=3.8e-06 Score=82.56 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=61.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh---------h---cCCC--CCcHHHH------HHHHHHH---HhCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT---------I---NKGK--SGTKVQC------LTSASSA---LKKG 78 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~---------i---r~~~--~~~~~~~------~~~~~~~---L~~G 78 (636)
+|++.|++||||||+++.|++..+ +..+.... + ..+. .....+. .+...+. +..|
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~--~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~ 78 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG--YEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTG 78 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 478999999999999999998766 22232211 1 0110 0000110 1111222 3478
Q ss_pred CeEEEeCCCCCHHH---------------H---HHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 79 KSVFLDRCNLEREQ---------------R---TDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 79 ~~VIID~tn~~~~~---------------R---~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..||+|...+.... . ..|... .....+-.+|+|++|.+++.+|+.+|.+
T Consensus 79 ~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r 147 (193)
T cd01673 79 QGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR 147 (193)
T ss_pred CceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence 89999996554211 1 112222 2223344789999999999999999875
No 150
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=98.31 E-value=2.3e-07 Score=91.46 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=48.0
Q ss_pred cccCChhhhhhhcccCCC--CCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 006654 257 KGTENPEVASVNQNGSSS--DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV 308 (636)
Q Consensus 257 ~~~l~~~~~s~l~~~~~~--~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~ 308 (636)
.+.+..|+.++|..++.+ +++|||||+||||+||||.++||+++..++++|+
T Consensus 133 ~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 133 TEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 467888999999998887 8999999999999999999999999999999883
No 151
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.29 E-value=1.3e-05 Score=88.68 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=74.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC--------C------------C-------CC-----cH-
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G------------K-------SG-----TK- 64 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~--------~------------~-------~~-----~~- 64 (636)
..|.+|+++|+||+||||+|.+|+..++.. ..|+.|.++. + | .+ ..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~-~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~ 331 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGIT-RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRA 331 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCc-EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchH
Confidence 469999999999999999999999999832 2567777642 0 0 00 00
Q ss_pred -------HH-------HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhccccc
Q 006654 65 -------VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE 129 (636)
Q Consensus 65 -------~~-------~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~ 129 (636)
.+ +...+.+.+..|.++|||+.++.+..+... ...+..+..+.+. -+.++..+|...|....
T Consensus 332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~---~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~ 408 (475)
T PRK12337 332 EVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHP---YQAGALVVPMLVTLPDEALHRRRFELRDRET 408 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHH---HhcCCceEEEEEEECCHHHHHHHHHHHhhhc
Confidence 11 225667888999999999999999876522 2223333323333 46678899999998753
No 152
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.28 E-value=3.6e-06 Score=94.81 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=61.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEe-C--
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLD-R-- 85 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID-~-- 85 (636)
.|+|+|+|||||||+++.|++.++ +.+++.|.+.....+. ..+....+.+.+......||. +
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg--~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg 79 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD--LQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG 79 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence 489999999999999999999998 6668888775433221 111222333333323334443 3
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
..+...+|..+ ++. .+|||++|.+++.+|+..|
T Consensus 80 vv~~~~~r~~l---~~~----~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 80 VVIDPENRELL---KKE----KTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred cccChHHHHHH---hcC----eEEEEECCHHHHHHHhccC
Confidence 23445556544 322 2789999999999999765
No 153
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.28 E-value=3.6e-06 Score=98.42 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=78.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC----------CcHH---HHH----HHHHHHH-hCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS----------GTKV---QCL----TSASSAL-KKG 78 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~----------~~~~---~~~----~~~~~~L-~~G 78 (636)
..+++|+|+||+||||+|++|++.++ .....++.+.++.... .... ++. ..+...+ ..|
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~G 294 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTD 294 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45899999999999999999999874 2233444444442111 1111 111 1122223 357
Q ss_pred CeEEEeCCCCCHHHHHHHHHh-CCCCC----eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654 79 KSVFLDRCNLEREQRTDFVKL-GGPEV----DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (636)
Q Consensus 79 ~~VIID~tn~~~~~R~~l~~l-~~~g~----~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe 149 (636)
..+|+|++|.+...|..+.+. ++.+. .+.++..-+.+...++|+..|..... + +.++++..+++++++
T Consensus 295 gvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~--~-~~~e~~~~~~~~~~~ 367 (664)
T PTZ00322 295 GVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMF--P-GAPEDFVDRYYEVIE 367 (664)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHH
Confidence 789999999999999888777 65553 44444444555566777776654321 1 356677677666553
No 154
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.26 E-value=5.7e-07 Score=82.16 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=38.6
Q ss_pred HHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccccc
Q 006654 566 RTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINK 616 (636)
Q Consensus 566 ~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~~~ 616 (636)
.+|..+|. +..|||.||++|+|+|.||||..|+|||||...+.++.++++
T Consensus 5 ~~i~~~~~-~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~ 54 (116)
T PF11969_consen 5 CIIIRGEE-PERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTP 54 (116)
T ss_dssp HHHTTSSS-GGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--G
T ss_pred eEeEcCCC-CCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCH
Confidence 34555555 567999999999999999999999999999999999988864
No 155
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.25 E-value=1.8e-07 Score=109.53 Aligned_cols=80 Identities=14% Similarity=0.012 Sum_probs=72.4
Q ss_pred cccccccccCcceecccccccchhhcccCChhhhhhhcccCCCCCC----------ccccccCccCCCCCChHHHHHHHH
Q 006654 232 TEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVII 301 (636)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~----------SiAfPaIStG~~gfP~~~aa~Iiv 301 (636)
.+.++.|.++-|.+-++|..+.+ .+.++.||.+||.+|++++++ |||||+||||+||||.++|+.|++
T Consensus 592 ~~g~L~~~~vIh~vGp~~~~~~~--~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~ 669 (725)
T PRK13341 592 PAGKLKLLYSIPAVGPAWALLSE--DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDS 669 (725)
T ss_pred CCCeeEEEEeccccChHhhhcCc--cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCH
Confidence 67788899988988888876433 678999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 006654 302 EKVEEFVNKLGN 313 (636)
Q Consensus 302 ~tv~~f~~~~~~ 313 (636)
+++++|+.+++.
T Consensus 670 ~~i~~~~~~~~~ 681 (725)
T PRK13341 670 KLIKRWLAQGPD 681 (725)
T ss_pred HHHHHHHhcCCc
Confidence 999999998765
No 156
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.20 E-value=2.4e-05 Score=79.12 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=80.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEee-------h-------h----------hhcCC-C----CCcHHH------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC-------Q-------D----------TINKG-K----SGTKVQ------ 66 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is-------~-------D----------~ir~~-~----~~~~~~------ 66 (636)
+|++-|.-||||||+++.|++.++.....-. . + .+..+ . .....+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4789999999999999999998762111000 0 0 01111 1 111111
Q ss_pred ----HHHHHHHHHhCCCeEEEeCCCCCH---------------HHHHHHHHh-----CCCCCeEEEEEEeCCHHHHHHHH
Q 006654 67 ----CLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKL-----GGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 67 ----~~~~~~~~L~~G~~VIID~tn~~~---------------~~R~~l~~l-----~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
....+...+..|..||+|...+.. .....+..+ .....+-.+|+|++|.+.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 112223345678899999963332 111112222 11122236899999999999999
Q ss_pred HhcccccCCCCCCChHHHHHHHHhhhcC---CCccCCccEEEEeCCh--hHHHHHHHH
Q 006654 123 VKRIEHEGNLQGGKAAAVVNRMLQKKEL---PKLSEGFSRITLCQNE--NDVQAALDT 175 (636)
Q Consensus 123 ~~R~~~~~~~~~~vp~evi~rm~~~fe~---P~~~Egfd~Viii~~~--~~vdaiv~~ 175 (636)
.+|.+... ..++.+.+++....|+. +. ++...+++.++.. ..++.++..
T Consensus 161 ~~R~~~~e---~~~~~~yl~~l~~~y~~~~~~~-~~~~~~~i~id~~~~~~~e~i~~~ 214 (219)
T cd02030 161 KKRGDPHE---MKVTSAYLQDIENAYKKTFLPE-ISEHSEVLQYDWTEAGDTEKVVED 214 (219)
T ss_pred HHcCCchh---hcccHHHHHHHHHHHHHHHHHh-hccCCCEEEEeCCChhhHHHHHHH
Confidence 99875321 13555555444443322 21 1122456666544 566666654
No 157
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.18 E-value=1.2e-05 Score=78.88 Aligned_cols=111 Identities=21% Similarity=0.185 Sum_probs=67.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC------CCc-------HHHHHHHHHHHHhCC-------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK------SGT-------KVQCLTSASSALKKG------- 78 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~------~~~-------~~~~~~~~~~~L~~G------- 78 (636)
+|.+.|+|||||||||+.|++.+. .+...|+.|.+.... .+. ....+......|.+|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 478999999999999999998863 457789998886411 111 111222222334433
Q ss_pred -------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHH-HHHHHHhcccccCCCCCCChH
Q 006654 79 -------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL-CISRSVKRIEHEGNLQGGKAA 138 (636)
Q Consensus 79 -------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~-l~~R~~~R~~~~~~~~~~vp~ 138 (636)
.-+|++|.......-..+.+ ..|++++|.++ ++.|-..|....++ ...+
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d--------~~I~vd~~~~~~rl~rri~RD~~~rg---~~~~ 149 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLD--------IRVAVSGGVHLNRLLRRVVRDIQFRG---YSAE 149 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcC--------EEEEEeCCccHHHHHHHHHHhHHhhC---CCHH
Confidence 23777885543322222212 27899999998 77777777754332 3455
Q ss_pred HHHHH
Q 006654 139 AVVNR 143 (636)
Q Consensus 139 evi~r 143 (636)
+++.+
T Consensus 150 ~~i~~ 154 (179)
T cd02028 150 LTILM 154 (179)
T ss_pred HHhhh
Confidence 55554
No 158
>PLN02348 phosphoribulokinase
Probab=98.16 E-value=1.6e-05 Score=86.44 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=74.1
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCC------------------CeEEeehhhhcC-CC-----CC---------c
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR------------------PWARICQDTINK-GK-----SG---------T 63 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~------------------~~~~Is~D~ir~-~~-----~~---------~ 63 (636)
...|.+|-+.|++||||||||+.|+..++. ....|+.|++.. .. .+ .
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~d 125 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANN 125 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccccc
Confidence 356889999999999999999999998752 246788888741 10 01 1
Q ss_pred HHHHHHHHHHHHhCCC------------------------eEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHH
Q 006654 64 KVQCLTSASSALKKGK------------------------SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCI 119 (636)
Q Consensus 64 ~~~~~~~~~~~L~~G~------------------------~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~ 119 (636)
.+ .+......|++|+ .+|++|....... .+. ...+ ..||+++|.++..
T Consensus 126 fD-ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~lr--~l~D---~~IyVd~~~dvrl 197 (395)
T PLN02348 126 FD-LMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--RVR--DLLD---FSIYLDISDDVKF 197 (395)
T ss_pred HH-HHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--ccc--ccCc---EEEEEECCHHHHH
Confidence 22 2344455666663 3566763321111 110 1111 3789999999998
Q ss_pred HHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654 120 SRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (636)
Q Consensus 120 ~R~~~R~~~~~~~~~~vp~evi~rm~~~ 147 (636)
.|..+|.....+ ...+++..++.++
T Consensus 198 ~RRI~RD~~eRG---~S~EeV~~~i~ar 222 (395)
T PLN02348 198 AWKIQRDMAERG---HSLESIKASIEAR 222 (395)
T ss_pred HHHHHhhHhhcC---CCHHHHHHHHHhc
Confidence 888888754221 3456666665443
No 159
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.14 E-value=1.4e-05 Score=79.10 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=66.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCC---C----eEEeehhhhcC------------CC--CC-----cHHHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSAR---P----WARICQDTINK------------GK--SG-----TKVQCLTSASSAL 75 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~---~----~~~Is~D~ir~------------~~--~~-----~~~~~~~~~~~~L 75 (636)
+|.+.|+|||||||||++|+..++. . ...++.|.+.. .. +. ..+.+ ......|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l-~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLL-KEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHH-HHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHH-HHHHHHH
Confidence 5889999999999999999998862 2 23455554420 00 01 12233 3344456
Q ss_pred hCC-------------------------CeEEEeCCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 76 KKG-------------------------KSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 76 ~~G-------------------------~~VIID~tn~-~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
++| .-||++|... ..+.-..+.++ .||++++.++++.|...|....
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~--------~ifld~~~~~~l~Rri~RD~~~ 151 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDL--------KIFLDADEDLRLERRIQRDVAE 151 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SE--------EEEEEE-HHHHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeeccccee--------EEEecccHHHHHHHHhhhhccc
Confidence 544 2378888552 22221222222 6799999999999999997643
Q ss_pred CCCCCCChHHHHHHHH
Q 006654 130 GNLQGGKAAAVVNRML 145 (636)
Q Consensus 130 ~~~~~~vp~evi~rm~ 145 (636)
.+ ..+++++.++.
T Consensus 152 rG---~~~~~~~~~~~ 164 (194)
T PF00485_consen 152 RG---RSPEEVIAQYE 164 (194)
T ss_dssp S----S-HHHHHHHHH
T ss_pred cC---CcceeEEEEee
Confidence 22 35566665544
No 160
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.13 E-value=3.9e-05 Score=75.86 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC-CCeEEeehhhhc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTIN 57 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~Is~D~ir 57 (636)
+|.|+|++||||||+++.|...++ .....++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 478999999999999999998863 235667777764
No 161
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.13 E-value=1.9e-05 Score=79.19 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=69.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------------C-------Cc---------------
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------------S-------GT--------------- 63 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------------~-------~~--------------- 63 (636)
.|..|.|+|.+||||||+++.|++.+| +.+++.|.+.... + +.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg--~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLN--LNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE 82 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcC--CeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence 467899999999999999999998888 4567766653110 0 00
Q ss_pred ---------HHHHHHHHHHHHhCC--CeEEEeCCCCCHHHH--HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 64 ---------KVQCLTSASSALKKG--KSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 64 ---------~~~~~~~~~~~L~~G--~~VIID~tn~~~~~R--~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
+..+...+.+.+... ..+|+|..-+-+... ..+.+ .++++.+|.++..+|+.+|...
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D--------~vi~V~a~~e~ri~Rl~~Rd~~-- 152 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLK--------KVIVIKADLETRIRRLMERDGK-- 152 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCC--------EEEEEECCHHHHHHHHHHcCCC--
Confidence 011112333333322 356777733322111 11111 2778899999999999999652
Q ss_pred CCCCCChHHHHHHHHhhh
Q 006654 131 NLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 131 ~~~~~vp~evi~rm~~~f 148 (636)
..+++..++..++
T Consensus 153 -----s~~~a~~ri~~Q~ 165 (204)
T PRK14733 153 -----NRQQAVAFINLQI 165 (204)
T ss_pred -----CHHHHHHHHHhCC
Confidence 3466677777665
No 162
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.12 E-value=2.1e-06 Score=77.64 Aligned_cols=95 Identities=23% Similarity=0.197 Sum_probs=55.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-----------hhhc-CC-CCCcH---HHHHHHHHHH---HhCCCeEEE
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----------DTIN-KG-KSGTK---VQCLTSASSA---LKKGKSVFL 83 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-----------D~ir-~~-~~~~~---~~~~~~~~~~---L~~G~~VII 83 (636)
|+|.|+|||||||+|+.|++.++ ..+.+. +... .. ..... ......+... ...+..+|+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 78 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIII 78 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEE
Confidence 68999999999999999999863 111110 0000 00 11111 1223333332 456778999
Q ss_pred eCCCCCHHHHHHHHHhCCCCCeEEE-EEEeCCHHHHHHHHHhcccc
Q 006654 84 DRCNLEREQRTDFVKLGGPEVDVHA-VVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l~~~g~~v~v-V~Ld~p~e~l~~R~~~R~~~ 128 (636)
|+....... ....... |+|++|.+++.+|+..|...
T Consensus 79 d~~~~~~~~---------~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 79 DGILSNLEL---------ERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp EESSEEECE---------TTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ecccchhcc---------cccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 995432211 1111223 89999999999999999875
No 163
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.12 E-value=1.7e-05 Score=79.56 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
..+.+|.++|.+||||||+++.|.. +| +..++.|.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g--~~v~d~D~i 38 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MG--CELFEADRV 38 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC--CeEEeccHH
Confidence 3467899999999999999999986 56 566776644
No 164
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.11 E-value=1.5e-05 Score=75.22 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=68.1
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCCC-------cHHH---HHHHHHHHH-hCCCeE
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG-------TKVQ---CLTSASSAL-KKGKSV 81 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~~-------~~~~---~~~~~~~~L-~~G~~V 81 (636)
..++..+|+|.|++||||||+|-+|.+.+. .....+|.|.+|.+... .+.+ .+..+.... ..|--.
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic 106 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC 106 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence 345667899999999999999999987653 34567899998865322 1111 122333333 333333
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
|.+-...++..|..-..+ .+. .+.-||+++|.++|.+|-
T Consensus 107 iaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 107 IASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD 146 (207)
T ss_pred eehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence 434444555667666666 443 566789999999999874
No 165
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.09 E-value=1.4e-05 Score=79.53 Aligned_cols=109 Identities=22% Similarity=0.197 Sum_probs=66.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------CC--------Cc----------------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KS--------GT---------------- 63 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------~~--------~~---------------- 63 (636)
+|.++|.+||||||+++.+.+ .| +..++.|.+... .+ +.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g--~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~ 77 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG--AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK 77 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC--CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence 478999999999999998864 56 667887776211 00 10
Q ss_pred --------HHHHHHHHHHHH---hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 006654 64 --------KVQCLTSASSAL---KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132 (636)
Q Consensus 64 --------~~~~~~~~~~~L---~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~ 132 (636)
+..+...+.+.+ ..+..+|+|..-+.+.....+.+ .++++.+|.++..+|+.+|..
T Consensus 78 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D--------~vi~V~a~~e~r~~RL~~R~g----- 144 (196)
T PRK14732 78 LKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCD--------ATVTVDSDPEESILRTISRDG----- 144 (196)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCC--------EEEEEECCHHHHHHHHHHcCC-----
Confidence 001112222222 23445677774443333233322 278899999999999999954
Q ss_pred CCCChHHHHHHHHhhh
Q 006654 133 QGGKAAAVVNRMLQKK 148 (636)
Q Consensus 133 ~~~vp~evi~rm~~~f 148 (636)
...+++..++..++
T Consensus 145 --~s~e~a~~ri~~Q~ 158 (196)
T PRK14732 145 --MKKEDVLARIASQL 158 (196)
T ss_pred --CCHHHHHHHHHHcC
Confidence 23466777776654
No 166
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=98.08 E-value=1.1e-06 Score=79.21 Aligned_cols=98 Identities=9% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCchhhHHHHHHHHhhc---CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccc-cchhhcccCChhhhhhhc
Q 006654 194 NPDAKIQLGIMKFLKKV---DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEVASVNQ 269 (636)
Q Consensus 194 ~~~~~v~~~i~k~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~s~l~ 269 (636)
.+...++..+.+..++. .....+|.-. .+...++.+.+..|.+.+.+.. ......+.+..++..|++
T Consensus 17 ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~---------~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~ 87 (118)
T PF01661_consen 17 AIFKAAGPALQEECKEIKKKGGELPVGEVI---------VTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQ 87 (118)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHSSSTTSEE---------EEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHhhcccCcccCCCee---------eecCCCccccceEEEecceeccccccccHHHHHHHHHHHHH
Confidence 45556666666555542 1234555411 1344566688888887776642 225567788889999999
Q ss_pred ccCCCCCCccccccCccCCCCCChHHHHHHH
Q 006654 270 NGSSSDVPTLAFPSLSTSDFQFNNEKASDVI 300 (636)
Q Consensus 270 ~~~~~~~~SiAfPaIStG~~gfP~~~aa~Ii 300 (636)
.+++++++|||||+|+||++|||.+++++|+
T Consensus 88 ~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 88 KAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999986
No 167
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.04 E-value=3.6e-05 Score=78.25 Aligned_cols=122 Identities=22% Similarity=0.246 Sum_probs=69.7
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEE-eehhhhcCC--------C------CC--cHHHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWAR-ICQDTINKG--------K------SG--TKVQCLTSASSAL 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~-Is~D~ir~~--------~------~~--~~~~~~~~~~~~L 75 (636)
...++.++.|.|++|||||||++.|+..+.. .... +..|.+... . .. ....+. .+...|
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~-~~l~~l 107 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA-ALLRRL 107 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH-HHHHHH
Confidence 3467899999999999999999999877652 1222 554443210 0 00 111221 222222
Q ss_pred hCC---------------------------CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 ~~G---------------------------~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..| ..+|+|+...... ...|..+ ...+ .++++++|.+++++|...|..
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~-~~~~~~l~~~~D---~vi~v~~~~~~~~~R~~~R~~ 183 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLD-EEPWRRLAGLFD---FTIFLDAPAEVLRERLVARKL 183 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeec-cccHHHHHhhCC---EEEEEECCHHHHHHHHHHHHH
Confidence 211 2367788544321 1233223 2222 378999999999999999964
Q ss_pred ccCCCCCCChHHHHHHHHh
Q 006654 128 HEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 128 ~~~~~~~~vp~evi~rm~~ 146 (636)
..+ ...+++..++.+
T Consensus 184 ~~g----~s~~~~~~~~~~ 198 (229)
T PRK09270 184 AGG----LSPEAAEAFVLR 198 (229)
T ss_pred hcC----CCHHHHHHHHHh
Confidence 222 244556666653
No 168
>PLN02422 dephospho-CoA kinase
Probab=98.01 E-value=2.9e-05 Score=79.31 Aligned_cols=109 Identities=22% Similarity=0.183 Sum_probs=67.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------CC--------Cc----------------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KS--------GT---------------- 63 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------~~--------~~---------------- 63 (636)
+|.+.|.+||||||+++.|+ ++| +.++|.|.+... .+ +.
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g--~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSG--IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC--CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 68999999999999999998 567 677888776211 00 10
Q ss_pred --------HHHHHHHHHHHH----hCC-CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 64 --------KVQCLTSASSAL----KKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 64 --------~~~~~~~~~~~L----~~G-~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
+..+...+.+.+ ..+ ..+|+|..-+-+.....+.+ .++++++|.++..+|+.+|..
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D--------~vI~V~a~~e~ri~RL~~R~g--- 148 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTK--------PVVVVWVDPETQLERLMARDG--- 148 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCC--------EEEEEECCHHHHHHHHHHcCC---
Confidence 011112221111 123 45777874333322222211 278899999999999999964
Q ss_pred CCCCCChHHHHHHHHhhh
Q 006654 131 NLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 131 ~~~~~vp~evi~rm~~~f 148 (636)
-..+++.+++..++
T Consensus 149 ----~s~eea~~Ri~~Q~ 162 (232)
T PLN02422 149 ----LSEEQARNRINAQM 162 (232)
T ss_pred ----CCHHHHHHHHHHcC
Confidence 24466777776655
No 169
>PRK07429 phosphoribulokinase; Provisional
Probab=98.01 E-value=7.3e-05 Score=80.21 Aligned_cols=119 Identities=23% Similarity=0.322 Sum_probs=72.1
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcC---------CCC-----CcHHHHHHHHHHHHhCC---
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINK---------GKS-----GTKVQCLTSASSALKKG--- 78 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~---------~~~-----~~~~~~~~~~~~~L~~G--- 78 (636)
..+|.+|.+.|++||||||+++.|+..++. ....++.|.+.. +.. ......+....+.|..|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 357889999999999999999999988763 245667776631 100 01112223233444443
Q ss_pred ---------------------CeEEEeCCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 006654 79 ---------------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK 136 (636)
Q Consensus 79 ---------------------~~VIID~tn-~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~v 136 (636)
..||+|+.. +.......+.++ .||+++|.++...|..+|...... ..
T Consensus 85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~--------~I~Vda~~evr~~Rri~Rd~~rrG---~s 153 (327)
T PRK07429 85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDF--------KVYLDPPEEVKIAWKIKRDMAKRG---HT 153 (327)
T ss_pred ecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCE--------EEEEECCHHHHHHHHHHHHHhhcC---CC
Confidence 247778853 332222233233 789999999998887777754221 34
Q ss_pred hHHHHHHHHh
Q 006654 137 AAAVVNRMLQ 146 (636)
Q Consensus 137 p~evi~rm~~ 146 (636)
.+++..++.+
T Consensus 154 ~eei~~~i~~ 163 (327)
T PRK07429 154 YEQVLAEIEA 163 (327)
T ss_pred HHHHHHHHHH
Confidence 4556665544
No 170
>PRK05439 pantothenate kinase; Provisional
Probab=98.00 E-value=2e-05 Score=83.71 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=66.6
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCC-----------CCC---cH-HHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKG-----------KSG---TK-VQCLTSASSAL 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~-----------~~~---~~-~~~~~~~~~~L 75 (636)
..+.|.+|.+.|+|||||||+|+.|+..++ .....|+.|.+... ..+ +. ...+......|
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 456789999999999999999999987553 23567787776311 111 11 12233334444
Q ss_pred hCCC---------------------------eEEEeCCCCCHHHHH-HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 76 KKGK---------------------------SVFLDRCNLEREQRT-DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 76 ~~G~---------------------------~VIID~tn~~~~~R~-~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
++|+ -+|++|.+.-...+. .|..+ .-.+ ..||+++|.+++.+|..+|.
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D---~~IfVda~~~~~~~w~i~R~ 238 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFD---FSIYVDADEDLIEKWYIERF 238 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCC---EEEEEECCHHHHHHHHHHHH
Confidence 4432 256677553322221 22222 1122 26899999999999888886
Q ss_pred cc
Q 006654 127 EH 128 (636)
Q Consensus 127 ~~ 128 (636)
.+
T Consensus 239 ~~ 240 (311)
T PRK05439 239 LK 240 (311)
T ss_pred HH
Confidence 53
No 171
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.00 E-value=2.3e-05 Score=78.28 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.+|.++|.+||||||+++.|+. +| +.+++.|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g--~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG--FLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC--CeEEeCcHH
Confidence 4689999999999999999987 66 678998865
No 172
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.95 E-value=0.00016 Score=69.39 Aligned_cols=140 Identities=17% Similarity=0.253 Sum_probs=90.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC-CCeEEe-----eh--hh------------hc----CC-CCCcHHH------H
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARI-----CQ--DT------------IN----KG-KSGTKVQ------C 67 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~I-----s~--D~------------ir----~~-~~~~~~~------~ 67 (636)
|..+|+++||+|+||-|+.......+. .+-.++ .. |. +. ++ ...+|.. +
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 678999999999999999888776654 221222 11 11 10 00 0012221 1
Q ss_pred HHHHHHHHhCCCeEEEeCC-CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 68 LTSASSALKKGKSVFLDRC-NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 68 ~~~~~~~L~~G~~VIID~t-n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
-..+...|..|..||+.+. ..-+..|..|- ...++.+.++.+++.+|+.+|++ +..+++..|+.+
T Consensus 84 p~eId~wl~~G~vvl~NgSRa~Lp~arrry~-------~Llvv~ita~p~VLaqRL~~RGR-------Es~eeI~aRL~R 149 (192)
T COG3709 84 PAEIDLWLAAGDVVLVNGSRAVLPQARRRYP-------QLLVVCITASPEVLAQRLAERGR-------ESREEILARLAR 149 (192)
T ss_pred chhHHHHHhCCCEEEEeccHhhhHHHHHhhh-------cceeEEEecCHHHHHHHHHHhcc-------CCHHHHHHHHHh
Confidence 2667788999999998883 22334444442 34578889999999999999998 467888888876
Q ss_pred hhcCCCccCCccEEEEeCChhHHHHHHHH
Q 006654 147 KKELPKLSEGFSRITLCQNENDVQAALDT 175 (636)
Q Consensus 147 ~fe~P~~~Egfd~Viii~~~~~vdaiv~~ 175 (636)
.-..-. .+ .+|+.+++..+.+...+.
T Consensus 150 ~a~~~~--~~-~dv~~idNsG~l~~ag~~ 175 (192)
T COG3709 150 AARYTA--GP-GDVTTIDNSGELEDAGER 175 (192)
T ss_pred hccccc--CC-CCeEEEcCCCcHHHHHHH
Confidence 543321 23 356677777777666655
No 173
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.94 E-value=6.1e-05 Score=77.58 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=29.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.+|.|.|..||||||+++.|.+.+| +..||.|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G--~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH--IEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CeEEehHHH
Confidence 4689999999999999999998877 667888776
No 174
>PLN02772 guanylate kinase
Probab=97.93 E-value=0.00014 Score=79.28 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=74.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCe----EEe-----------------ehhhhc----CCCCCcH--------H
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW----ARI-----------------CQDTIN----KGKSGTK--------V 65 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~----~~I-----------------s~D~ir----~~~~~~~--------~ 65 (636)
...+++|+||+|+||+|+.++|.+.++..+ .+. +.+.+. .+.+..+ -
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 456899999999999999999988653111 111 111110 1111100 0
Q ss_pred HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654 66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~ 145 (636)
.-...+...+++|+.+|+|- ...-+..+.+.. -..+.++....+.+++.+|+..|... ..+.+.+|+.
T Consensus 214 Tsk~~V~~vl~~Gk~vILdL---D~qGar~Lr~~~--l~~v~IFI~PPSlEeLe~RL~~RGte-------seE~I~kRL~ 281 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDI---DVQGARSVRASS--LEAIFIFICPPSMEELEKRLRARGTE-------TEEQIQKRLR 281 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeC---CHHHHHHHHHhc--CCeEEEEEeCCCHHHHHHHHHhcCCC-------CHHHHHHHHH
Confidence 11255677789999999986 333333332221 11233444456689999999999762 3445555554
Q ss_pred hhh-cCC--CccCCccEEEEeC
Q 006654 146 QKK-ELP--KLSEGFSRITLCQ 164 (636)
Q Consensus 146 ~~f-e~P--~~~Egfd~Viii~ 164 (636)
... +.. .....|+.+++-+
T Consensus 282 ~A~~Ei~~~~~~~~fD~vIvND 303 (398)
T PLN02772 282 NAEAELEQGKSSGIFDHILYND 303 (398)
T ss_pred HHHHHHhhccccCCCCEEEECC
Confidence 431 221 1123467765543
No 175
>PRK06761 hypothetical protein; Provisional
Probab=97.93 E-value=3.4e-05 Score=81.00 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=66.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe----ehhhhcC----CCC-CcHH---HH--------HHHHHHHHhCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARI----CQDTINK----GKS-GTKV---QC--------LTSASSALKKGK 79 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I----s~D~ir~----~~~-~~~~---~~--------~~~~~~~L~~G~ 79 (636)
..+|++.|+|||||||+++.+++.+......+ +.|.... +.. .+.. .. .....+.+..|.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 46899999999999999999999886321111 1121110 000 0111 11 124445667788
Q ss_pred eEEEeCCCCCHHHHHHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 80 SVFLDRCNLEREQRTDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~-l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.+|+-..-+...+|..+.. + ... .+..++ .+|.+.+.+|...|..|
T Consensus 83 ~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~p~e~i~~R~~~rw~~ 130 (282)
T PRK06761 83 YYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-ELPFDKNTELITDRWND 130 (282)
T ss_pred eEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cCCHHHHHHHHHHHHHH
Confidence 8888877777777776653 1 111 233344 99999999999999875
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.89 E-value=6.2e-05 Score=68.27 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=45.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH-HHHHHHHhCC--CeEEEeCC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKKG--KSVFLDRC 86 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~-~~~~~~L~~G--~~VIID~t 86 (636)
|+|.|+||+||||+++.+++.++.++..++...+.....+...+.+ ..+..+-..+ .-+++|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 6899999999999999999999977788888777654444433333 3333333333 34778884
No 177
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.89 E-value=0.00024 Score=70.95 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=64.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCe--EEeeh----hhhcCCC--CCcHHH------HHHHHHHHHhCC-----Ce
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPW--ARICQ----DTINKGK--SGTKVQ------CLTSASSALKKG-----KS 80 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~--~~Is~----D~ir~~~--~~~~~~------~~~~~~~~L~~G-----~~ 80 (636)
..+|++.|+=|+||||+|+.|+++++... ..+.. |.+.+.. .....| .++....++..+ ++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drs 83 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNILDRS 83 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 45799999999999999999999998321 11221 3332221 111111 113334444443 23
Q ss_pred EEEeC----------CCCCHHHHHHHHHh---------CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 81 VFLDR----------CNLEREQRTDFVKL---------GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 81 VIID~----------tn~~~~~R~~l~~l---------~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
|+-|. -++.+....-+.++ ...+.+=.+|+|+++.+++++|+.+|++.
T Consensus 84 I~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~ 150 (216)
T COG1428 84 IFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRP 150 (216)
T ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 33333 33444444333333 22334447899999999999999999874
No 178
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.89 E-value=0.00016 Score=81.76 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.+.+|.+.|++||||||+|+.|++.++ +.+++.|.++
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~Y 319 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMY 319 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCcee
Confidence 567899999999999999999999998 7788876654
No 179
>PRK07933 thymidylate kinase; Validated
Probab=97.88 E-value=0.00025 Score=71.54 Aligned_cols=106 Identities=23% Similarity=0.289 Sum_probs=64.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh---------hhhc----CC--CC--Cc----------HHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ---------DTIN----KG--KS--GT----------KVQCLTSA 71 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~---------D~ir----~~--~~--~~----------~~~~~~~~ 71 (636)
+|++-|+-||||||+++.|++.+. ..+..+.. +.++ .. .. .. +.+....+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I 81 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDEL 81 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHH
Confidence 789999999999999999998764 12222211 1111 10 00 00 01112446
Q ss_pred HHHHhCCCeEEEeCCCCCHH-------------HHHHHHHh-C--CCC--CeEEEEEEeCCHHHHHHHHHhccc
Q 006654 72 SSALKKGKSVFLDRCNLERE-------------QRTDFVKL-G--GPE--VDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 72 ~~~L~~G~~VIID~tn~~~~-------------~R~~l~~l-~--~~g--~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+|..|..||.|...++.- .-..|+.. . ..+ .+=.+|+|++|.++..+|+.+|..
T Consensus 82 ~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~ 155 (213)
T PRK07933 82 AGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA 155 (213)
T ss_pred HHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence 66778899999999554432 11233332 2 112 233689999999999999999864
No 180
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.87 E-value=5.4e-05 Score=76.75 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN 57 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir 57 (636)
+|.+.|++||||||+|+.|+..+. .....|+.|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 477999999999999999998763 234567777663
No 181
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.87 E-value=3.9e-05 Score=75.47 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=65.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC----------------------CCc---------------
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK----------------------SGT--------------- 63 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~----------------------~~~--------------- 63 (636)
.+|.++|..||||||+++.|.+ +| +..+|.|.+.... .+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G--~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~ 77 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LG--FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPE 77 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT---EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CC--CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHH
Confidence 3689999999999999999988 77 7789987773110 010
Q ss_pred ---------HHHHHHHHHHHHh---CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 006654 64 ---------KVQCLTSASSALK---KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131 (636)
Q Consensus 64 ---------~~~~~~~~~~~L~---~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~ 131 (636)
+..+...+.+.+. ....+|+|..-+.+.....+ .+ .++++.+|.++..+|+.+|...
T Consensus 78 ~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~-----~D---~vi~V~a~~e~ri~Rl~~R~~~--- 146 (180)
T PF01121_consen 78 KLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKL-----CD---EVIVVYAPEEIRIKRLMERDGL--- 146 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGG-----SS---EEEEEE--HHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhh-----hc---eEEEEECCHHHHHHHHHhhCCC---
Confidence 0111233333332 22568888855554422222 12 2778899999999999999752
Q ss_pred CCCCChHHHHHHHHhhh
Q 006654 132 LQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 132 ~~~~vp~evi~rm~~~f 148 (636)
..+++..++..++
T Consensus 147 ----~~~~~~~ri~~Q~ 159 (180)
T PF01121_consen 147 ----SEEEAEARIASQM 159 (180)
T ss_dssp ----THHHHHHHHHTS-
T ss_pred ----cHHHHHHHHHhCC
Confidence 3455566666554
No 182
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.85 E-value=0.00036 Score=70.71 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=29.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ 55 (636)
|+.+|.+.|++||||||+++.|+++++ +.+++.+.
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~--~~~~~~g~ 35 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLG--YAYLDSGA 35 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC--CceeeCch
Confidence 456899999999999999999999988 55566543
No 183
>PRK13974 thymidylate kinase; Provisional
Probab=97.82 E-value=0.00049 Score=69.22 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=62.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC--------CeEEee-----------hhhhcCCC----CCcH-----------H
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARIC-----------QDTINKGK----SGTK-----------V 65 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--------~~~~Is-----------~D~ir~~~----~~~~-----------~ 65 (636)
..+|++.|++||||||+++.|++.+.. .+.... ++.+.... .... .
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987641 111111 01111110 0111 0
Q ss_pred HHHHHHHHHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 66 QCLTSASSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 66 ~~~~~~~~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
.+...+..+|..|..||.|....+. .+-..+..+ ...-.+-.+++|++|.+++.+|+..|..
T Consensus 83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d 157 (212)
T PRK13974 83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP 157 (212)
T ss_pred HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence 1112356677888888888743322 112223222 2111233689999999999999987743
No 184
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=97.81 E-value=8.5e-06 Score=76.64 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=74.8
Q ss_pred CCchhhHHHHHHHHhhcCCCC--CCCCCCcccCCCCCCcccccccc-cccCcceecccccccc-hhhcccCChhhhhhhc
Q 006654 194 NPDAKIQLGIMKFLKKVDAPS--NTGSTASSTQDPVPPQITEEKNS-CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQ 269 (636)
Q Consensus 194 ~~~~~v~~~i~k~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~ 269 (636)
++....+.++.+.+++..... ++|. ..+ +...+.+ +...-|.+.+.+.... ....+.+..++.+||.
T Consensus 35 ai~~~~g~~~~~~~~~~~~~~~~~~G~--~~~-------t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~ 105 (147)
T cd02749 35 AISKKAGKELEEESKKLRKELELQVGE--AVL-------TKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLK 105 (147)
T ss_pred HHHHHhCHHHHHHHHHHhcccCCCCCC--EEE-------CcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 566666777777776644332 4554 111 2234555 7788887777666532 2345678889999999
Q ss_pred ccCCCCCCccccccCccCCCCC------ChHHHHHHHHHHH
Q 006654 270 NGSSSDVPTLAFPSLSTSDFQF------NNEKASDVIIEKV 304 (636)
Q Consensus 270 ~~~~~~~~SiAfPaIStG~~gf------P~~~aa~Iiv~tv 304 (636)
.+...++.|||||.|+||++|| |.+.+++|+..++
T Consensus 106 ~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 106 EAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred HHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999998875
No 185
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.80 E-value=0.00013 Score=82.90 Aligned_cols=40 Identities=35% Similarity=0.428 Sum_probs=31.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
...+.+|.+.|++||||||||+.|+..++ ....|+.|.+.
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp-~vgvIsmDdy~ 101 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVISMDNYN 101 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC-CcEEEEEccee
Confidence 34578999999999999999999998874 24567766653
No 186
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.77 E-value=0.00032 Score=68.58 Aligned_cols=144 Identities=17% Similarity=0.112 Sum_probs=76.0
Q ss_pred EccCCCcHHHHHHHHHHHcCC-CeE-Eeeh------------hhhcCCCCCcH------------HHHHHHHHHHHhCCC
Q 006654 26 VGAPGSGKSTFCEHVMRSSAR-PWA-RICQ------------DTINKGKSGTK------------VQCLTSASSALKKGK 79 (636)
Q Consensus 26 vG~PGSGKSTlAr~Lak~~~~-~~~-~Is~------------D~ir~~~~~~~------------~~~~~~~~~~L~~G~ 79 (636)
=|+.||||||+++.|.+.+.. ... .+.. +.+........ ..+...+..+|..|.
T Consensus 2 EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g~ 81 (186)
T PF02223_consen 2 EGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRGK 81 (186)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 499999999999999987651 121 1210 11121111110 112245567889999
Q ss_pred eEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 80 SVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 80 ~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
.||+|..-++ ...-..+... -.. .+=.+++|++|.+++.+|+..|.... ....-..+.++++..
T Consensus 82 ~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~-~PDl~~~Ldv~pe~~~~R~~~r~~~~--~~~~~~~~~~~~~~~ 158 (186)
T PF02223_consen 82 IVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLP-KPDLTFFLDVDPEEALKRIAKRGEKD--DEEEEDLEYLRRVRE 158 (186)
T ss_dssp EEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTT-E-SEEEEEECCHHHHHHHHHHTSSTT--TTTTHHHHHHHHHHH
T ss_pred EEEEechhHHHHHhCccccCCcchhhhHHHHHhcCC-CCCEEEEEecCHHHHHHHHHcCCccc--hHHHHHHHHHHHHHH
Confidence 9999982111 1122222222 101 22258899999999999999998811 111223344444444
Q ss_pred hhcCCCccCCccEEEEeCChhHHHHHHH
Q 006654 147 KKELPKLSEGFSRITLCQNENDVQAALD 174 (636)
Q Consensus 147 ~fe~P~~~Egfd~Viii~~~~~vdaiv~ 174 (636)
.|..-.. ......+++....++++.+
T Consensus 159 ~y~~l~~--~~~~~~iid~~~~~e~v~~ 184 (186)
T PF02223_consen 159 AYLELAK--DPNNWVIIDASRSIEEVHE 184 (186)
T ss_dssp HHHHHHH--TTTTEEEEETTS-HHHHHH
T ss_pred HHHHHHc--CCCCEEEEECCCCHHHHHh
Confidence 4322111 1123445555555666554
No 187
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.74 E-value=8.5e-05 Score=61.34 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=41.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC-CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL- 99 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l- 99 (636)
+|+++|+|||||||+++.|++.++ ..+.+++. .+|+|+......+|. ..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~--------------------------~~I~eg~~~~~~~~~--~~~~ 52 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE--------------------------IVILEGLYASYKSRD--ARIR 52 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE--------------------------EEEecchhhhhhhHH--hhcc
Confidence 378899999999999999999852 23444543 789999777666544 222
Q ss_pred CCCCCeEEEEEEeC
Q 006654 100 GGPEVDVHAVVLDL 113 (636)
Q Consensus 100 ~~~g~~v~vV~Ld~ 113 (636)
...+. .+|+++
T Consensus 53 ~~~d~---~Iyld~ 63 (69)
T cd02019 53 DLADL---KIYLDA 63 (69)
T ss_pred ccccE---EEEEEe
Confidence 33333 566665
No 188
>PRK15453 phosphoribulokinase; Provisional
Probab=97.73 E-value=0.00037 Score=72.98 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir 57 (636)
.++.+|.++|.|||||||+|+.+++.++ .....++.|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 3567899999999999999999988764 235678888775
No 189
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.70 E-value=0.00024 Score=74.43 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=64.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCC------CCC-----cH---HHHHHHHHHHHhCC--------
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKG------KSG-----TK---VQCLTSASSALKKG-------- 78 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~------~~~-----~~---~~~~~~~~~~L~~G-------- 78 (636)
+|.++|++||||||+++.|+..++. ....++.|.+..- ..+ .. ...+......|+.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 4789999999999999999987652 2456777765310 000 00 11122233344443
Q ss_pred ----------------CeEEEeCCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654 79 ----------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (636)
Q Consensus 79 ----------------~~VIID~tn-~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi 141 (636)
..+|+++.. +.......+.++ .||+++|.++...|..+|.....+ ...+++.
T Consensus 81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~--------~I~vd~~~e~r~~r~i~Rd~~rrG---~s~e~v~ 149 (273)
T cd02026 81 NHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDF--------SVYLDISDEVKFAWKIQRDMAERG---HSLEDVL 149 (273)
T ss_pred cccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccE--------EEEEECChhHHHHHHHHHHHHHhC---CCHHHHH
Confidence 236677743 222222222222 789999999997766666543221 2445566
Q ss_pred HHHHh
Q 006654 142 NRMLQ 146 (636)
Q Consensus 142 ~rm~~ 146 (636)
.++..
T Consensus 150 ~~i~~ 154 (273)
T cd02026 150 ASIEA 154 (273)
T ss_pred HHHHh
Confidence 65543
No 190
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.68 E-value=0.00015 Score=76.53 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=30.1
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~i 56 (636)
...|.+|.+.|++||||||+|+.|...+. .....++.|.+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 35689999999999999999998765542 13455676665
No 191
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=97.67 E-value=1.3e-05 Score=73.86 Aligned_cols=66 Identities=6% Similarity=0.022 Sum_probs=54.5
Q ss_pred ccccccCcceecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHH
Q 006654 235 KNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVI 300 (636)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Ii 300 (636)
++.+....|.+.+.+........+.+..++.+|+..+.+.+++|||||+|+||.+|||.+++++++
T Consensus 68 ~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 68 NLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred CCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 456677777777666653235567888899999999999999999999999999999999999874
No 192
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.64 E-value=0.00037 Score=74.23 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=31.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.++.+|+++||+||||||+|..|++.++ ..+|+.|.+
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~--~~iis~Ds~ 38 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLN--GEIISADSM 38 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCC--CcEEecccc
Confidence 3567999999999999999999999987 456777663
No 193
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.64 E-value=0.00016 Score=67.79 Aligned_cols=88 Identities=19% Similarity=0.319 Sum_probs=52.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEE-e--------------------ehhhhc----CCCC-------C-cHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTIN----KGKS-------G-TKVQCL 68 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~-I--------------------s~D~ir----~~~~-------~-~~~~~~ 68 (636)
+|+|+||+||||||+++.|++.++..+.. + +.+.+. .+.+ + ......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 47899999999999999999875422111 1 111110 0000 0 000123
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCH
Q 006654 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPA 115 (636)
Q Consensus 69 ~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~ 115 (636)
..+.+.++.|+.+|+|. .+.....++.......+|++.+|+
T Consensus 81 ~~i~~~~~~g~~~il~~------~~~~~~~l~~~~~~~~~I~i~~~~ 121 (137)
T cd00071 81 AAVEEALAEGKIVILEI------DVQGARQVKKSYPDAVSIFILPPD 121 (137)
T ss_pred HHHHHHHhCCCeEEEEe------cHHHHHHHHHcCCCeEEEEEECCC
Confidence 55677788999999998 444444443344566788888883
No 194
>PLN02165 adenylate isopentenyltransferase
Probab=97.64 E-value=0.00048 Score=73.81 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=65.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--C---------------CC-----------CC--cHHHH-
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--K---------------GK-----------SG--TKVQC- 67 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~---------------~~-----------~~--~~~~~- 67 (636)
+..+|+|+||+||||||+|..|++.++ ..+|+.|.+. . +. .+ +....
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~--~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP--SEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC--CceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 455899999999999999999999987 4557766551 0 00 00 11111
Q ss_pred ---HHHHHHHHhCCCe-EEEeCCCCCHHHHHH-H-------HHh-CC-----CCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 68 ---LTSASSALKKGKS-VFLDRCNLEREQRTD-F-------VKL-GG-----PEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 68 ---~~~~~~~L~~G~~-VIID~tn~~~~~R~~-l-------~~l-~~-----~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
...+.+....|+. |++-+|.++-..-.. + ..- +. ..+.+.+++++.+.+++.+|+.+|-..
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd~ 198 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVDE 198 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 2333444556664 555556543322211 0 000 11 124456788999999999999999763
No 195
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.63 E-value=0.00018 Score=72.05 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=30.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
++.+|.|+|.|||||||+|+.+.+ +| +..++.|.+
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G--~~vidaD~v 35 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LG--FPVIDADDV 35 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cC--CeEEEccHH
Confidence 467899999999999999999988 77 677887776
No 196
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00018 Score=71.22 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=32.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
-.+|-|.|+..|||||||+.|.+.++ ....|++|+++
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~-~~~lIhqDDFy 40 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFP-GCSLIHQDDFY 40 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHcc-CCeeecccccc
Confidence 36788999999999999999999887 45689999985
No 197
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.60 E-value=0.00025 Score=78.06 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=28.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.|.|+|.+||||||+++.|++ +| +..||.|.+.
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G--~~vidaD~i~ 35 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LG--AVVVDADVLA 35 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC--CeEEehHHHH
Confidence 589999999999999999987 67 6778888773
No 198
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.0014 Score=66.04 Aligned_cols=110 Identities=25% Similarity=0.314 Sum_probs=69.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEee-------hhhhc----CC--CCCc----------H-HHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-------QDTIN----KG--KSGT----------K-VQCLTSA 71 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is-------~D~ir----~~--~~~~----------~-~~~~~~~ 71 (636)
+..+|++=|+=||||||+++.|.+.+.. .+...- ...+| ++ .... + +.+...+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i 81 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI 81 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999877642 111111 02222 21 1111 1 1134666
Q ss_pred HHHHhCCCeEEEeCCCCCHHHHH--------HHH----Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 72 SSALKKGKSVFLDRCNLEREQRT--------DFV----KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 72 ~~~L~~G~~VIID~tn~~~~~R~--------~l~----~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
..++..|..||+|.+..+.-..+ .|. .. ...-.+-.+++|++|.++..+|+.+|...
T Consensus 82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 77788999999999655443222 122 22 21002336899999999999999999775
No 199
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.50 E-value=0.00074 Score=69.68 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=72.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCCCC------------C----------------c----
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGKS------------G----------------T---- 63 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~~~------------~----------------~---- 63 (636)
...-++|++-|+-|||||+||++|+++++. .|..+..|++.-... + .
T Consensus 68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~ 147 (393)
T KOG3877|consen 68 HENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAA 147 (393)
T ss_pred cccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHH
Confidence 344579999999999999999999999982 222234444421100 0 0
Q ss_pred ---------HHHHHHHHHHHHhCCCeEEEeCCCCCH---------------HHHHHHHHh-C----CCCCeEEEEEEeCC
Q 006654 64 ---------KVQCLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKL-G----GPEVDVHAVVLDLP 114 (636)
Q Consensus 64 ---------~~~~~~~~~~~L~~G~~VIID~tn~~~---------------~~R~~l~~l-~----~~g~~v~vV~Ld~p 114 (636)
..+....+.-.|..|.+||++.+++.. ..+.-+-.+ + +.-.+..+|||++|
T Consensus 148 ~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P 227 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP 227 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence 123335566677889999999977654 122222222 1 11223468999999
Q ss_pred HHHHHHHHHhccc
Q 006654 115 AKLCISRSVKRIE 127 (636)
Q Consensus 115 ~e~l~~R~~~R~~ 127 (636)
...+.+|+.+|+.
T Consensus 228 v~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 228 VNKVLENIKRRGN 240 (393)
T ss_pred cHHHHHHHHhcCC
Confidence 9999999999986
No 200
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.0005 Score=70.28 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=75.7
Q ss_pred ccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------------C-------------
Q 006654 14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------------K------------- 60 (636)
Q Consensus 14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------------~------------- 60 (636)
+.+...|.+|++-|+||.||||+|..++.++|.. ..|++|.+|+- |
T Consensus 83 ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~-~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~pii 161 (299)
T COG2074 83 IRKMKRPLIILIGGASGVGKSTIAGELARRLGIR-SVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPII 161 (299)
T ss_pred HhccCCCeEEEecCCCCCChhHHHHHHHHHcCCc-eeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchh
Confidence 3566679999999999999999999999999954 45888888621 0
Q ss_pred CCcHHH-------HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 006654 61 SGTKVQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDV-HAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 61 ~~~~~~-------~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.|..++ +-..+.+++.+|.++||.+.++-+..-..- .. +..+ .++..-.+.++...|.-.|.+.
T Consensus 162 aGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~---~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~ 233 (299)
T COG2074 162 AGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE---AL-GNNVFMFMLYIADEELHRERFYDRIRY 233 (299)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh---hh-ccceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 000111 125667899999999999988777433221 11 1222 3333345677888899999763
No 201
>PRK13976 thymidylate kinase; Provisional
Probab=97.48 E-value=0.00098 Score=67.14 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=61.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCC--C--eEEeeh--------hhhcC---C--CCCcH-----------HHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSAR--P--WARICQ--------DTINK---G--KSGTK-----------VQCLTSASS 73 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~--~--~~~Is~--------D~ir~---~--~~~~~-----------~~~~~~~~~ 73 (636)
+|++-|+-||||||+++.|++.+.. + -+++.. ..++. + ..... +.+...+..
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p 81 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILP 81 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999877642 1 111111 11221 0 11110 111244667
Q ss_pred HHhCCCeEEEeCCCCCHHHHH--------HHH-Hh-C--CCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 74 ALKKGKSVFLDRCNLEREQRT--------DFV-KL-G--GPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 74 ~L~~G~~VIID~tn~~~~~R~--------~l~-~l-~--~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
+|.+|..||.|....+.-..+ .|. .+ . ....+=.+|+|++|.+++.+|+..|
T Consensus 82 ~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 82 ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence 888999999999655432211 122 22 1 1112336889999999999998644
No 202
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.48 E-value=0.00098 Score=63.72 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=77.2
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-------------CCC---------------c-HHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------KSG---------------T-KVQ 66 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-------------~~~---------------~-~~~ 66 (636)
...+.++|+|-|.|-||||++|.++...+..+|.||.-|.+.+. +.+ . .+.
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 44566899999999999999999999888778999987776311 000 0 011
Q ss_pred H---HH-HHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 67 C---LT-SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 67 ~---~~-~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
. .. .+...+.+|.++|.|+.--++..--.-.+ .-.++.+..|-+.+|+|+..+|-..|..+.
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r-~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~ 164 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLR-VLEGCRVWMVGVHVPDEEGARRELRRGDRH 164 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHH-HHhCCceEEEEeeccHHHHHHHHhhcCCcC
Confidence 1 12 23334467889999995544333222222 346778888889999999999988887643
No 203
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.47 E-value=0.0006 Score=70.94 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK 58 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~ 58 (636)
+|.++|.+||||||+++++.+.++ .....|+.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 478899999999999999987764 3467889888753
No 204
>PHA00729 NTP-binding motif containing protein
Probab=97.45 E-value=0.00088 Score=68.13 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=59.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh--cCC---CCCcHHHHHHHHHHHHhCC---CeEEEeCCCCCH-
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--NKG---KSGTKVQCLTSASSALKKG---KSVFLDRCNLER- 90 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i--r~~---~~~~~~~~~~~~~~~L~~G---~~VIID~tn~~~- 90 (636)
...|++.|+||+||||+|.+++...+.....+..+.. ..+ ...+...+...+..++... .-+|||+.-.-.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~ 96 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLS 96 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhc
Confidence 3578999999999999999999886522222322211 111 1123344445555444432 236999922111
Q ss_pred ---HHHH------HHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 91 ---EQRT------DFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 91 ---~~R~------~l~~l-~-~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+.+. .+..+ . ... .+++..+..+.|.+|+.+|+-
T Consensus 97 ~~~wh~~~~~~yf~L~~aLrSR~~---l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 97 KYVWYEDYMKTFYKIYALIRTRVS---AVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred ccchhhhccchHHHHHHHHHhhCc---EEEEecCCHHHHHHHHHhCCC
Confidence 1211 12222 2 222 366778889999999999875
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00084 Score=75.78 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=49.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHH-HHHHHHhC-CCeEEEeC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT-SASSALKK-GKSVFLDR 85 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~-~~~~~L~~-G~~VIID~ 85 (636)
+|+=|+|-||||||||.||++++.+++.++.-|+.-.+-.+..|..++-++ ....+... ...++||.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDe 290 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDE 290 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeec
Confidence 466789999999999999999999999999889888887777776555443 33333333 23466666
No 206
>PRK09087 hypothetical protein; Validated
Probab=97.34 E-value=0.0014 Score=66.84 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=66.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--------------CC---CCCcHHHHHHHHHHHHhCCCeEEEe
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KG---KSGTKVQCLTSASSALKKGKSVFLD 84 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--------------~~---~~~~~~~~~~~~~~~L~~G~~VIID 84 (636)
.++|+|++|||||++++.+++..+ ...++.+.+. ++ ...+...++..+-....+|+.+|+-
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD--ALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC--CEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 479999999999999999988766 3334432111 00 1123444556666666778888877
Q ss_pred CCCCCHHHHHHHHHh-C--CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654 85 RCNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l-~--~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f 148 (636)
++..........-++ . ..+. ++.+..|.+..+..+.+|.-... .-.++++++.-+.+++
T Consensus 124 s~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~~~~~~~--~~~l~~ev~~~La~~~ 185 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIFKLFADR--QLYVDPHVVYYLVSRM 185 (226)
T ss_pred CCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHh
Confidence 643222222212222 1 2232 55666666544433333322111 1257778777777765
No 207
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.0051 Score=61.83 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=28.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D 54 (636)
.+|.+=||.||||||+|+.++++++ |.++++.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg--~~yldTG 36 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG--FHYLDTG 36 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC--CCeeccc
Confidence 6788999999999999999999999 6668753
No 208
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.30 E-value=0.00076 Score=72.97 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=46.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~ 68 (636)
-..|..+.|.||||+|||.+|+.++++++..+..++...+...+.|..+..+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~I 196 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLI 196 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHH
Confidence 3568899999999999999999999999988899999999999999876544
No 209
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.26 E-value=0.0057 Score=64.12 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=68.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhC------CCeEEEeCCCCCH--HH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK------GKSVFLDRCNLER--EQ 92 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~------G~~VIID~tn~~~--~~ 92 (636)
.+|++.|++||||||-.+.|-. +| |..|| .+ +. .++....+.+.. .-.+++|.-+..- .-
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED-~G--y~cvD--Nl------P~-~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~ 69 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALED-LG--YYCVD--NL------PP-SLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL 69 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHh-cC--eeEEc--CC------cH-HHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence 5799999999999998887754 45 54443 22 11 122222233331 1147888854332 22
Q ss_pred HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH-hcccccCCCCCCChHHHHHHHHhhh
Q 006654 93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHEGNLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 93 R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~-~R~~~~~~~~~~vp~evi~rm~~~f 148 (636)
...+..+++.+..+.++||+++++++++|-. .|..||....+... +.+.+-.+.+
T Consensus 70 ~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~l-e~I~~Er~~L 125 (284)
T PF03668_consen 70 FEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLL-EAIEKERELL 125 (284)
T ss_pred HHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcH-HHHHHHHHHH
Confidence 2233333555888999999999999999876 56677765333333 4454444444
No 210
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=97.25 E-value=0.0012 Score=68.57 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=83.5
Q ss_pred eEEEEeccCcc-hhhhhhhhHHhhhhhc-CCeEEEEEEcccceecc-------cCcccccEEEeCCCCCCcCCCChhhHH
Q 006654 314 ARLVLVDLTQG-SKILSLVRAKAAQKHI-NPKKFFTFVGDITRLYT-------GGGLCCNVIANAANWRLKPGGGGVNAA 384 (636)
Q Consensus 314 ~~~v~~~~~~~-s~~Ls~vs~~~~~~~~-~~~~v~v~~GDIt~~~~-------~~~~~~daIVNaaN~~L~~~ggGVa~A 384 (636)
.++++.|.+.- .+.+ +..-...-+ ++..+.+..|++..+.. .....+++||.|||+-.. +|||.+.|
T Consensus 14 mkiil~D~N~~v~k~W---~~~l~~~~~~~~~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGy-MgGGFDLa 89 (280)
T PF14519_consen 14 MKIILCDTNPIVCKCW---KKHLPKALISSSNYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGY-MGGGFDLA 89 (280)
T ss_dssp -EEEEEES-HHHHHHH---HHH-----------EEEEES-HHHHHHHTTSS--------EEEEEEEETT-----SHHHHH
T ss_pred ceEEEEcCCHHHHHHH---HHHccHhhhccCceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhccc-CCCchhHH
Confidence 68888877642 1222 111111111 23348888998877641 123458999999999999 89999999
Q ss_pred HHHhhc-HHHHHHHHHhc--CCCCCCcEEEecCCC---CCCCCCCCCccEEEEecC---CC---CCCCCCCCCCCCccch
Q 006654 385 IFSAAG-PALEVATAERA--KSLYPGNSVIVPLPS---TSPLCGREGVTHVIHVLG---PN---MNPRRPNCLDGDYVKG 452 (636)
Q Consensus 385 I~~aaG-~~l~~e~~~~~--~~~~~G~avvT~l~~---~~~~~~~l~~k~VIH~Vg---P~---~~~~~~~~~~~~~~~~ 452 (636)
|.+.-| ..++..+++.. ...++|.+-+..++- .+-.++.-+++||||+=. |. |.... .+...
T Consensus 90 i~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~------~~~t~ 163 (280)
T PF14519_consen 90 ISEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREV------PYETG 163 (280)
T ss_dssp HHHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-------TTTTT
T ss_pred HHHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhH------HHHHH
Confidence 999976 45666566542 337899988877432 111235578999999832 22 22221 23345
Q ss_pred HHHHHHHHHHHHHhH----HHhhccccCCCCCCCcCc
Q 006654 453 CEILRKAYTSLFEGF----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 453 ~~~L~~ay~~~L~~a----~siaf~~~~~~~~~~~~~ 485 (636)
.+.+.++.++.|..+ .+|..|-+|+|-+.-+.-
T Consensus 164 ~~~vfn~~WN~l~~~p~~IdtLiiPGLgTGyGgV~p~ 200 (280)
T PF14519_consen 164 WSLVFNAMWNALRHAPEDIDTLIIPGLGTGYGGVPPE 200 (280)
T ss_dssp HHHHHHHHHHHHHTS-TT-SEEEE--SSSSTT---HH
T ss_pred HHHHHHHHHHhhccCCCCCCeEEECCcccccCCCCHH
Confidence 677888899988753 589999999887665443
No 211
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.24 E-value=0.00067 Score=68.80 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=42.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF 96 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l 96 (636)
..-++|.||||.||||+|+.++.+++..+..++...+.. . .. +..+...++.+.-++||-.+.-....+++
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k----~-~d-l~~il~~l~~~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK----A-GD-LAAILTNLKEGDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----C-HH-HHHHHHT--TT-EEEECTCCC--HHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----H-HH-HHHHHHhcCCCcEEEEechhhccHHHHHH
Confidence 345789999999999999999999997776666533321 1 11 13334456777788899987555444433
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.00089 Score=59.75 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=28.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCC---eEEeehhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDT 55 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~---~~~Is~D~ 55 (636)
+..++++|+|||||||+++.++..+... +..++.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 3568999999999999999999988743 55555443
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.21 E-value=0.0012 Score=65.73 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=31.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~ 58 (636)
|.+|+|+||+|+||||.+.+|+..+ +.....++.|.+|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 7899999999999999998888654 45577888888874
No 214
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.15 E-value=0.00047 Score=67.23 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=27.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
++++.|+|||||||||..++..++.++.++.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 58999999999999999999987755556665
No 215
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.14 E-value=0.0018 Score=67.29 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=67.1
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCC----C-eEEeehhhh--------------cCCCCCcHH-HHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----P-WARICQDTI--------------NKGKSGTKV-QCLTSASSAL 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~----~-~~~Is~D~i--------------r~~~~~~~~-~~~~~~~~~L 75 (636)
..+.|.+|.++|+||+||||+|+.|...+.+ + ...+-+|-+ |.|...+.+ ..+-.....+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v 157 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV 157 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence 3567899999999999999999998866541 1 222333332 122222222 1122222333
Q ss_pred hCC---------------------------CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 ~~G---------------------------~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
++| +-+|+.|.|+-.... .|..+ .-.+. .||+|++.+.+.+|...|..
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~~sdffDf---SIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLFLSDFFDF---SIYVDADEELLEERYIERFL 233 (283)
T ss_pred hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-ccccccccceE---EEEecCCHHHHHHHHHHHHH
Confidence 322 247778865544333 44444 33333 78999999999999999987
Q ss_pred ccC
Q 006654 128 HEG 130 (636)
Q Consensus 128 ~~~ 130 (636)
..+
T Consensus 234 ~~g 236 (283)
T COG1072 234 KFG 236 (283)
T ss_pred hcc
Confidence 543
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.13 E-value=0.0023 Score=57.86 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=45.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHH-----HHHHHHHHHhCCCeEEEeCCCCC-
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQ-----CLTSASSALKKGKSVFLDRCNLE- 89 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~-----~~~~~~~~L~~G~~VIID~tn~~- 89 (636)
....+++.|+||+||||+++.++..+ +..+..++.............. ..............+|+|..+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34578899999999999999999886 4445555544333221111100 01111222234456899997643
Q ss_pred HHHHHHHHHh
Q 006654 90 REQRTDFVKL 99 (636)
Q Consensus 90 ~~~R~~l~~l 99 (636)
......+..+
T Consensus 98 ~~~~~~~~~~ 107 (151)
T cd00009 98 RGAQNALLRV 107 (151)
T ss_pred HHHHHHHHHH
Confidence 2334444444
No 217
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0041 Score=67.20 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=48.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH--hCCCeEEEeC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDR 85 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L--~~G~~VIID~ 85 (636)
=|+|+||||+|||-||++++.+.+-.|..|+.-.+-..|.|..+.+++.+-+.. .+...++||-
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhh
Confidence 578999999999999999999998777788888888888888776554443222 3344456654
No 218
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.09 E-value=0.0043 Score=71.53 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=32.1
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
..++.++++|+||||-||||+|+.+|+..|..++.||.
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA 359 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA 359 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence 45567899999999999999999999999955566664
No 219
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.09 E-value=0.0028 Score=64.77 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..++|.||||+|||++++.++...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988654
No 220
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.08 E-value=0.0041 Score=68.99 Aligned_cols=40 Identities=33% Similarity=0.480 Sum_probs=33.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.+|.+|+|+|++||||||.+.+|+..+ +.....++.|.+|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 458999999999999999999998655 4556778888876
No 221
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0025 Score=67.44 Aligned_cols=26 Identities=27% Similarity=0.769 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
-++|+|-||||.|||++|++|++++-
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 36899999999999999999999874
No 222
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.04 E-value=0.0051 Score=61.88 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=70.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--C------C------CCC----------------cHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--K------G------KSG----------------TKVQCLTS 70 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~------~------~~~----------------~~~~~~~~ 70 (636)
.+++++||+|+|||.+|-.++++++ +..|+.|.+. . + ..+ +..+..+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g--~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~ 79 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTG--APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHER 79 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhC--CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHH
Confidence 4789999999999999999999999 5556655542 0 0 000 11222222
Q ss_pred HHH---HHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHH-HHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654 71 ASS---ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAK-LCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 71 ~~~---~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e-~l~~R~~~R~~~~~~~~~~vp~evi~rm~ 145 (636)
+.. .+..++.+|+.+-..+.-.+- +.+. -..++.+++.++.+|++ .-..|..+|...... |+.-....+....
T Consensus 80 Li~~v~~~~~~~~~IlEGGSISLl~~m-~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~-p~~~~~Sll~EL~ 157 (233)
T PF01745_consen 80 LISEVNSYSAHGGLILEGGSISLLNCM-AQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR-PDSSGPSLLEELV 157 (233)
T ss_dssp HHHHHHTTTTSSEEEEEE--HHHHHHH-HH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS---SSS--HHHHHH
T ss_pred HHHHHHhccccCceEEeCchHHHHHHH-HhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC-CCCCCCcHHHHHH
Confidence 222 224477899999544432222 2333 45778899999988775 456788777654322 2334456777777
Q ss_pred hhhcCCCc
Q 006654 146 QKKELPKL 153 (636)
Q Consensus 146 ~~fe~P~~ 153 (636)
..+..|..
T Consensus 158 ~lW~~p~~ 165 (233)
T PF01745_consen 158 ALWNDPAL 165 (233)
T ss_dssp HHHTSTTH
T ss_pred HHHhCccc
Confidence 77777664
No 223
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.03 E-value=0.0087 Score=70.30 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=31.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
..+|.+.||+||||||+|+.|+++++ +.+++.+.++
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~--~~~~~~~~~~ 477 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG--YHYLDSGALY 477 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC--CeEecHHHhh
Confidence 34788899999999999999999999 6678877664
No 224
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.00 E-value=0.0064 Score=64.17 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=27.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+|+++||+|||||++|..|++.++ ..+|+.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~--~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN--AEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC--CcEEEechh
Confidence 479999999999999999999987 445666554
No 225
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.00 E-value=0.0017 Score=73.45 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=41.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~ 68 (636)
..|.=|+|.||||+|||.+|+.++.+.+.++..++...+..++.+..+..+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l 307 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM 307 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence 356678999999999999999999999988888888777777766654433
No 226
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.99 E-value=0.0045 Score=56.26 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=52.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc--------CCCeEEeehhhh--------------cCC-CC-CcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS--------ARPWARICQDTI--------------NKG-KS-GTKVQCLTSASSA 74 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~--------~~~~~~Is~D~i--------------r~~-~~-~~~~~~~~~~~~~ 74 (636)
...++++.|+||+|||++++.+++.+ ...+..++.... ... .. .+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45679999999999999999999876 333444442111 111 11 2445566777777
Q ss_pred HhCCC--eEEEeCCCC--CHHHHHHHHHhCCCCCeEEEEEEeCC
Q 006654 75 LKKGK--SVFLDRCNL--EREQRTDFVKLGGPEVDVHAVVLDLP 114 (636)
Q Consensus 75 L~~G~--~VIID~tn~--~~~~R~~l~~l~~~g~~v~vV~Ld~p 114 (636)
+.... -+|||.... ....-..+..+.+ ...+.+|++-.|
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 76665 488898543 2233333333422 445555555544
No 227
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0089 Score=57.91 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
+.+++++|.||+||||+.+...+.+ ..+..+|.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~ivNy 36 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHKIVNY 36 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhceeeeH
Confidence 5789999999999999999988877 12444554
No 228
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.97 E-value=0.0072 Score=62.63 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=38.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHHHH-HHHHHHHHhCCCeEEEeCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQC-LTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~~~-~~~~~~~L~~G~~VIID~tn 87 (636)
..-++|.|+||+||||+|+.+++.+. ..+..++...+...+.+..... ...+.. ..|..++||...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~--a~~~VL~IDE~~ 115 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKK--ALGGVLFIDEAY 115 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHh--ccCCEEEEechh
Confidence 44578999999999999999987642 1233344433433333332221 122221 135567888754
No 229
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.97 E-value=0.0053 Score=68.49 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~ 58 (636)
.+|.+|+|+|++|+||||.+.+|+..+ +.....++.|.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 468999999999999999999998655 34466678777653
No 230
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.94 E-value=0.0092 Score=57.57 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
++++.|+|||||||++..++..+ +.....++.|.++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68899999999999999988664 4446667777553
No 231
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.0092 Score=65.72 Aligned_cols=154 Identities=18% Similarity=0.301 Sum_probs=98.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCe-EEEeCCCCCHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVK 98 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~-VIID~tn~~~~~R~~l~~ 98 (636)
.+|++-+..-||||||.|+.|.+-++ |.++..|.+ .+.-++. .+.+.+.+..+.|.. |++|..|.....|..+..
T Consensus 374 ~tll~pia~igcgktt~ak~l~~lf~--w~~vqnd~l-sgk~~~k-~~~kai~~~~r~~~~~v~~drnnh~~~~r~~lq~ 449 (758)
T COG5324 374 FTLLVPIATIGCGKTTVAKILEKLFG--WPVVQNDNL-SGKGGPK-RFAKAIIEEFRNGHSVVFADRNNHISNMRSTLQT 449 (758)
T ss_pred eEEEEEEEEeccCcccHHHHHHHHcC--CcccccCCC-CCCCchh-HHHHHHHHHhccCceEEEEcccchhhhhhhhhhc
Confidence 45889999999999999999999998 999998888 4443333 334555666677765 677888877778866633
Q ss_pred h---CCCCCeEEEEEEe-CCH--HHHHHHHHhcccccCCCCC--CC--hHHHHHHHHhhhcCCCc----cCCccEEEEeC
Q 006654 99 L---GGPEVDVHAVVLD-LPA--KLCISRSVKRIEHEGNLQG--GK--AAAVVNRMLQKKELPKL----SEGFSRITLCQ 164 (636)
Q Consensus 99 l---~~~g~~v~vV~Ld-~p~--e~l~~R~~~R~~~~~~~~~--~v--p~evi~rm~~~fe~P~~----~Egfd~Viii~ 164 (636)
- -.-|..+..+-++ .|. +...+|+.+|+.+..+..- ++ ...++..+++++.+-.. ...|++++.++
T Consensus 450 d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~~~d~~~d~~ield 529 (758)
T COG5324 450 DILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGNKHDANYDDIIELD 529 (758)
T ss_pred ceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCCCccccccceeecc
Confidence 2 2233333333232 222 6678899999986544211 11 12456667777766443 34577777665
Q ss_pred C----hhHHHHHHHHhc
Q 006654 165 N----ENDVQAALDTYS 177 (636)
Q Consensus 165 ~----~~~vdaiv~~~~ 177 (636)
. .+.+..+++.++
T Consensus 530 ~~~~sl~nar~i~n~~~ 546 (758)
T COG5324 530 PLIGSLENARRIVNYFK 546 (758)
T ss_pred cccchhhhHHHHHHHHH
Confidence 3 334555555554
No 232
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.93 E-value=0.0017 Score=71.38 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=36.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT 63 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~ 63 (636)
..|.-|+|.|+||+|||++|+.++...+.++..++...+...+.+.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~ 208 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGE 208 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccc
Confidence 3466789999999999999999999998777777765554444443
No 233
>PRK10867 signal recognition particle protein; Provisional
Probab=96.92 E-value=0.0087 Score=66.66 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=32.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINK 58 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~ 58 (636)
.+|.+|+++|++||||||++.+|+..+ +.....++.|.+|.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 468999999999999999888877543 55567788887763
No 234
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0015 Score=68.29 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=52.0
Q ss_pred cCcc-EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCe--EEEeC
Q 006654 17 KWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDR 85 (636)
Q Consensus 17 ~~~p-~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~--VIID~ 85 (636)
..+| +=|+|.||||.|||+||++++-+.+-.|..++..++-..|.|..+.+++.+-+..++.++ +.||-
T Consensus 162 kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDE 233 (439)
T KOG0739|consen 162 KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDE 233 (439)
T ss_pred CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 3344 468999999999999999999888766667777777788999888877666666666554 44453
No 235
>PRK06620 hypothetical protein; Validated
Probab=96.88 E-value=0.0074 Score=60.98 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..++|.|+||||||++++.+++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4579999999999999999887765
No 236
>PF13173 AAA_14: AAA domain
Probab=96.85 E-value=0.0029 Score=58.30 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=47.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCCcHHHHHHHHHHHHh-CCCeEEEeCCCCCHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALK-KGKSVFLDRCNLEREQRTDFV 97 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~-~G~~VIID~tn~~~~~R~~l~ 97 (636)
.+++|.|+.|+||||+++++++.+. ..+..++.|+.+........ +.+.+.+... ....++||-....+.....+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk 81 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALK 81 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence 4689999999999999999998765 44556666555432111111 2233333332 335689999776665444444
Q ss_pred Hh
Q 006654 98 KL 99 (636)
Q Consensus 98 ~l 99 (636)
.+
T Consensus 82 ~l 83 (128)
T PF13173_consen 82 FL 83 (128)
T ss_pred HH
Confidence 44
No 237
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.85 E-value=0.007 Score=71.70 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+|.+.|+|||||||+|+.|++.++ |.++++..+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~--~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG--YAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeecCcE
Confidence 688999999999999999999998 666776554
No 238
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=96.84 E-value=0.00046 Score=64.64 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=43.4
Q ss_pred cccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654 257 KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (636)
Q Consensus 257 ~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~ 305 (636)
.+.++.+..++++.+.++++.|||||.|++|++|||.+++++||.+...
T Consensus 90 ~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~ 138 (140)
T cd02901 90 YEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 4567778888888898899999999999999999999999999988764
No 239
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.84 E-value=0.0082 Score=63.60 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=57.0
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH---hCCCeEEEeCCCCC--H
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL---KKGKSVFLDRCNLE--R 90 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L---~~G~~VIID~tn~~--~ 90 (636)
.+..|.++++.|+||+||||+++.+++..+..+..++... . ................ ...+.+|||..... .
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~ 115 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA 115 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH
Confidence 3445778888999999999999999998775555555433 1 1000001111111111 23456899986433 3
Q ss_pred HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 91 ~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
.....+..+ ........+|...-....+...+..|.
T Consensus 116 ~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 116 DAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 344445554 433222333333223334445555554
No 240
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0034 Score=68.18 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=50.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCe--EEEeCCC-CCHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDRCN-LEREQRTDFV 97 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~--VIID~tn-~~~~~R~~l~ 97 (636)
.-.||.||||+||||+|+.|+...+..|..+|.-.- +. ..-+.+++.++..+..|+. ++||-.+ +++.|...++
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--gv-kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--GV-KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--cH-HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence 346899999999999999999999877766663111 00 0122345666555655654 5678765 4555555554
Q ss_pred HhCCCC
Q 006654 98 KLGGPE 103 (636)
Q Consensus 98 ~l~~~g 103 (636)
-.-+.|
T Consensus 126 p~vE~G 131 (436)
T COG2256 126 PHVENG 131 (436)
T ss_pred hhhcCC
Confidence 443344
No 241
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0084 Score=63.60 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=73.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--CC------------CCC---------------cHHH---
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KG------------KSG---------------TKVQ--- 66 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~~------------~~~---------------~~~~--- 66 (636)
+-.+|+++|+.|||||.||-.||.+++ ...|+.|-+. .+ ..+ +..+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~--~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFP--GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCC--ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 567999999999999999999999987 6678876652 11 000 1111
Q ss_pred -HHHHHHHHHhCCC-eEEEeCCCCCHHHHHHH-H--H----------h-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 67 -CLTSASSALKKGK-SVFLDRCNLEREQRTDF-V--K----------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 67 -~~~~~~~~L~~G~-~VIID~tn~~~~~R~~l-~--~----------l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
....+.+..++|+ ++|+-|+|+.-..-..- . + + .+..|..++++++++..++-+|+.+|-..
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~ 161 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDD 161 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHH
Confidence 2245556667777 58888888664322110 0 0 1 12236678999999999999999999763
No 242
>PRK14974 cell division protein FtsY; Provisional
Probab=96.79 E-value=0.009 Score=64.49 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=30.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.+|.+|+++|+||+||||.+.+++..+ +.....++.|.+|
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 458899999999999999888877543 3345567777665
No 243
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.78 E-value=0.0028 Score=69.97 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=31.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
..|.-++|.||||+|||++|+.++...+.++..+..-.+
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 356778999999999999999999998877766654333
No 244
>PLN02748 tRNA dimethylallyltransferase
Probab=96.77 E-value=0.003 Score=70.86 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=31.8
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ 55 (636)
..++.+|+++||+||||||||..|++.++ ..+|+.|.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~--~eii~~Ds 55 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFP--VEIINADS 55 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC--eeEEcCch
Confidence 34567999999999999999999999987 66788774
No 245
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.76 E-value=0.0076 Score=63.20 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=32.1
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
..++.+|+++|+||+||||.+.+|+..+ +.....++.|.+|
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 3457899999999999999999988655 3445678888764
No 246
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.75 E-value=0.0024 Score=70.35 Aligned_cols=43 Identities=19% Similarity=0.482 Sum_probs=36.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-CCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG 62 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-~~~~ 62 (636)
|.-|+|+||||+||||+|+.|++.++.++.+++...+.. +|.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 577899999999999999999999998888888766664 5655
No 247
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.75 E-value=0.011 Score=65.66 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=33.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINK 58 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~ 58 (636)
.+|.+++++|+|||||||.+.+|+..+ +.....++.|.+|.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 468999999999999999988887653 44567788887753
No 248
>PHA03132 thymidine kinase; Provisional
Probab=96.74 E-value=0.012 Score=67.44 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..+|++-|+-||||||+++.|++.++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg 282 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILG 282 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999998874
No 249
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.74 E-value=0.0041 Score=66.62 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=31.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.++.+++++||+||||||++..|+..+ +.....++.|.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 467899999999999999999998655 3345667778765
No 250
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.73 E-value=0.0027 Score=69.11 Aligned_cols=38 Identities=21% Similarity=0.467 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.|.-++|.|+||+|||++|+.++..++.++..+....+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 35568999999999999999999998877666654433
No 251
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.72 E-value=0.0032 Score=70.17 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~ 62 (636)
.|.-++|.|+||+|||++|+.++..++.++..+....+...+.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~G 259 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLG 259 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcc
Confidence 56678899999999999999999998866766665444333333
No 252
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.017 Score=55.83 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
++.-|++.|+||+||||++.+++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45678999999999999999998665
No 253
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.70 E-value=0.016 Score=63.81 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=34.0
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~ 58 (636)
..+|.+|+|+|+-||||||.|-+|+..+ +.....++.|.+|.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 4578999999999999999999887554 44566788888873
No 254
>CHL00181 cbbX CbbX; Provisional
Probab=96.69 E-value=0.02 Score=60.45 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=39.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn 87 (636)
..-++|.|+||+||||+|+.+++.+. .++..++.+.+.....+... .....+.+ ..|.-++||...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~--a~ggVLfIDE~~ 132 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK--AMGGVLFIDEAY 132 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH--ccCCEEEEEccc
Confidence 34588999999999999999987642 13556666655433333211 11122221 235567888753
No 255
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.011 Score=67.80 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=32.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
..|+=|+|-|||||||||+|++++.+.+.+|.-|..-++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL 504 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL 504 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH
Confidence 467789999999999999999999998877766654333
No 256
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.66 E-value=0.0018 Score=60.03 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=26.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
|+|+|+||+|||++++.+++.++.++..+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~ 31 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRIN 31 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEE
Confidence 689999999999999999999986665554
No 257
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.64 E-value=0.0035 Score=69.14 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=35.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-CCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGKSG 62 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~~~~~ 62 (636)
.|.-|+|+||||+||||+|+.|++.++.++.+++.-.+. .++.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 467899999999999999999999999888777754454 35555
No 258
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.0084 Score=64.75 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=64.5
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC---------------Cc------HHHHHHH
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS---------------GT------KVQCLTS 70 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~---------------~~------~~~~~~~ 70 (636)
...++|.+|+++|+.||||||.+-+++..+. .....++.|.+|.+.+ ++ .....+-
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 5567899999999999999999999986653 3457889999975421 11 1112244
Q ss_pred HHHHHhCCCe-EEEeCCCCCHHHHHHHHHh----CCCCCeEEEEEEeCCH
Q 006654 71 ASSALKKGKS-VFLDRCNLEREQRTDFVKL----GGPEVDVHAVVLDLPA 115 (636)
Q Consensus 71 ~~~~L~~G~~-VIID~tn~~~~~R~~l~~l----~~~g~~v~vV~Ld~p~ 115 (636)
+.++-+++.. ||+|+.-+.+.+...+.++ +.....-.++++|.+.
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 4555556654 5667665555444444333 4444445667777765
No 259
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0034 Score=66.77 Aligned_cols=104 Identities=20% Similarity=0.310 Sum_probs=72.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCC---C----cHHHHH---HHHHHHH-hCCCeEEEeCC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKS---G----TKVQCL---TSASSAL-KKGKSVFLDRC 86 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~---~----~~~~~~---~~~~~~L-~~G~~VIID~t 86 (636)
.-|++.|++|+||||++-+|.+. .|.++.-++.|.||.+.. + .+++.+ ..+.... .+|-..|-.-.
T Consensus 51 ctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcitsfi 130 (627)
T KOG4238|consen 51 CTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITSFI 130 (627)
T ss_pred eeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeehhc
Confidence 45789999999999998887654 456777889999986521 1 122222 2333333 34433343434
Q ss_pred CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 87 n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
....+.|....++ ...+.++.-|+++.|.++|.+|..+
T Consensus 131 spf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k 169 (627)
T KOG4238|consen 131 SPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVK 169 (627)
T ss_pred ChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChH
Confidence 4455788888888 8888888888999999999998654
No 260
>PLN02840 tRNA dimethylallyltransferase
Probab=96.61 E-value=0.0053 Score=67.83 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=30.1
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ 55 (636)
+..+..+|+++||+||||||+|..|++.++. ..|+.|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~--~iis~Ds 54 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNG--EIISADS 54 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCC--CeEeccc
Confidence 3345668999999999999999999999884 3455544
No 261
>PRK04195 replication factor C large subunit; Provisional
Probab=96.56 E-value=0.012 Score=66.53 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=30.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D 54 (636)
..+..++|.||||+||||+|+.+++.++..+..++..
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 3467889999999999999999999998555556543
No 262
>PRK12377 putative replication protein; Provisional
Probab=96.55 E-value=0.0076 Score=62.38 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=60.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH--HHHHHHHHHHhCCCeEEEeCC---CCCHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRC---NLERE 91 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~--~~~~~~~~~L~~G~~VIID~t---n~~~~ 91 (636)
..-++|.|+||+|||++|.+++..+ +..+..++..++......... .....+.+.+..-..+|||.. ..+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 3568999999999999999998765 333444554333221100000 012344566777778999996 44556
Q ss_pred HHHHHHHh--CCCCC-eEEEEEEeCCHHHHHHHHH
Q 006654 92 QRTDFVKL--GGPEV-DVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 92 ~R~~l~~l--~~~g~-~v~vV~Ld~p~e~l~~R~~ 123 (636)
....+..+ ..+.. ...+|-=+.+.+.+.+++.
T Consensus 181 ~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~ 215 (248)
T PRK12377 181 EQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG 215 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhh
Confidence 55555555 33321 2234444667776655433
No 263
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.54 E-value=0.0057 Score=63.58 Aligned_cols=31 Identities=39% Similarity=0.552 Sum_probs=27.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
-++|.|+||+|||++|+.+++.++.++..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~ 53 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLIN 53 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4678999999999999999998887777664
No 264
>PHA02244 ATPase-like protein
Probab=96.54 E-value=0.0072 Score=65.71 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=46.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehh--hhc-C---CCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHH
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQD--TIN-K---GKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQ 92 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D--~ir-~---~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~ 92 (636)
|+|.|+||+|||++|+.++..++.++..++.. .+. . ...+.+ ....+.++++.|..+|||..+.....
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKF--HETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccc--cchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 67899999999999999999999888777631 110 0 111111 11344566788999999998755433
No 265
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.53 E-value=0.022 Score=56.78 Aligned_cols=110 Identities=24% Similarity=0.279 Sum_probs=68.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------CCC------------------------
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KSG------------------------ 62 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------~~~------------------------ 62 (636)
.+|-|.|--||||||+++.+. .+| +..||.|.+... .+|
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALG--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcC--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 467899999999999999887 667 566887766310 000
Q ss_pred --------c----HHHHHHHHHHHHhCCCe-EEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 63 --------T----KVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 63 --------~----~~~~~~~~~~~L~~G~~-VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
+ +..+++.+...+-.|.. +|+|. ++--+. .|..+ -...|.+-|+.++.++|+.+|..
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi-PLLFE~--~~~~~-----~~~tvvV~cd~~~Ql~Rl~~Rd~-- 148 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI-PLLFEA--KLLKI-----CHKTVVVTCDEELQLERLVERDE-- 148 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec-hHHHHH--hHHhh-----eeeEEEEEECcHHHHHHHHHhcc--
Confidence 0 11234555666677876 55666 433333 23222 12366777899999999999974
Q ss_pred CCCCCCChHHHHHHHHhhh
Q 006654 130 GNLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 130 ~~~~~~vp~evi~rm~~~f 148 (636)
-..+++-.|...++
T Consensus 149 -----lse~dAe~Rl~sQm 162 (225)
T KOG3220|consen 149 -----LSEEDAENRLQSQM 162 (225)
T ss_pred -----ccHHHHHHHHHhcC
Confidence 12344455555554
No 266
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=96.52 E-value=0.029 Score=53.86 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=81.5
Q ss_pred EEEEEcccceecccCcccccEEEeCCCCCCcCCC-ChhhHHHHHhhcH--HHHHHHHHhcCCCCCCcEEEecCCCCCCCC
Q 006654 345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-GGVNAAIFSAAGP--ALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (636)
Q Consensus 345 v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~g-gGVa~AI~~aaG~--~l~~e~~~~~~~~~~G~avvT~l~~~~~~~ 421 (636)
|..++||+++.... +.+..+|++..|..-. .| ||+++||.++.-. ...+.|.+. +.+.-|++.+++.......
T Consensus 2 I~yv~GD~~~p~~~-~~~~~iI~H~cN~~G~-WG~gGia~al~~k~p~~~~~Y~~~~~~-~dl~LG~~~li~v~~~~~~- 77 (152)
T cd03331 2 VRYVYGDVTHPSAV-CAEDAIIVHCVDDSGH-WGRGGLFTALEKRSDQPRKAYELAGKM-KDLHLGDLHLFPIDDKNSR- 77 (152)
T ss_pred eEEEeCccCCCCcc-CCCCeEEEEEECCCCC-CCcchHHHHHHHhCCcHHHHHHHHHhc-CCCccccEEEEEeccccCC-
Confidence 67899999998621 0124599999999998 77 7999999998742 222234443 5677999999884221111
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH----HHhhccccCCC
Q 006654 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLS 478 (636)
Q Consensus 422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a----~siaf~~~~~~ 478 (636)
.-+-.+|...++....+..+. ..-+...|++|...+-..+ .||.+|-||.+
T Consensus 78 -~~~~~~va~l~~q~~~~~~~~-----~~~~~~aL~~~L~~~~~~a~~~~~sVhmPrIg~G 132 (152)
T cd03331 78 -LKGPDWVALIVAQHRDKSNPL-----SGIKLSALEKGLKKIYFAAKQKSASVHLPRIGHS 132 (152)
T ss_pred -CCCCeEEEEEEeEccCCCCCC-----CccCHHHHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 122368999999887655221 1234566666666655543 47899988854
No 267
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.50 E-value=0.0021 Score=69.67 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.8
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.....+++|+|||||||||+|+.|++.++
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34568899999999999999999998876
No 268
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.004 Score=70.52 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=40.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~ 68 (636)
|.=|+|+||||||||-+|++++.+.+..|..|-.-++.+.+.|..+..+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAV 593 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAV 593 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHH
Confidence 6668999999999999999999999988888877777777766655433
No 269
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.0099 Score=65.74 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=31.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINK 58 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~ 58 (636)
++.+++++|++||||||++.+|+..+ +.....++.|.+|.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46789999999999999999998654 33456677787663
No 270
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.021 Score=62.31 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=59.4
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEeeh--------hhhc-CCC-CCcHHHHHHHHHHHHh-
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARICQ--------DTIN-KGK-SGTKVQCLTSASSALK- 76 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is~--------D~ir-~~~-~~~~~~~~~~~~~~L~- 76 (636)
...+..+++.||||+||||+|+.+++.+.... +..+. |.+. +.. ...... ++.+.+.+.
T Consensus 35 ~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~ 113 (363)
T PRK14961 35 GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDNIYY 113 (363)
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHhc
Confidence 34577889999999999999999999875210 00000 1111 110 011122 233333322
Q ss_pred -----CCCeEEEeCCCC-CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 77 -----KGKSVFLDRCNL-EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 77 -----~G~~VIID~tn~-~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+-+|||.... +......+++. .+....+.+|......+.+.+++..|..
T Consensus 114 ~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~ 171 (363)
T PRK14961 114 SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCL 171 (363)
T ss_pred CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhce
Confidence 124689998653 33344456555 5444444455554455566677777764
No 271
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.45 E-value=0.0073 Score=64.72 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=42.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL 88 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~ 88 (636)
.+..+++.||||+||||+|+.++..++..+..++...+.. . ..+..+...+..+..++||....
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-----~-~~l~~~l~~l~~~~vl~IDEi~~ 113 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-----P-GDLAAILTNLEEGDVLFIDEIHR 113 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-----h-HHHHHHHHhcccCCEEEEecHhh
Confidence 3456789999999999999999999885444343322211 1 11233344566777889998653
No 272
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.011 Score=66.77 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+..|..+++.||||+||||+|+.+++.++
T Consensus 32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 32 KNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344566789999999999999999999875
No 273
>PRK06893 DNA replication initiation factor; Validated
Probab=96.44 E-value=0.023 Score=57.88 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..++|.|+||+|||++++.++..+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 367999999999999999998764
No 274
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.44 E-value=0.016 Score=64.15 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=46.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCCC-CCHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN-LEREQRTDF 96 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~tn-~~~~~R~~l 96 (636)
+.-++|.|+||+||||+|+.+++..+..+..++..... .......+..+..... .+..++||... ++..+...+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L 112 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL 112 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH
Confidence 33577899999999999999999888667666542110 0011122333332233 33457888864 455555555
Q ss_pred HHh
Q 006654 97 VKL 99 (636)
Q Consensus 97 ~~l 99 (636)
+..
T Consensus 113 L~~ 115 (413)
T PRK13342 113 LPH 115 (413)
T ss_pred HHH
Confidence 555
No 275
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.44 E-value=0.0045 Score=70.22 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=32.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
..|.-++|.||||+|||++|+.++...+.++..++...+.
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 3455689999999999999999999998777777765543
No 276
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.42 E-value=0.0026 Score=64.76 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+.+|.+.|+|||||||+|+.|++.++ +.+++.+.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~--~~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG--FHYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--CCcccCchh
Confidence 46899999999999999999999998 556776553
No 277
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.41 E-value=0.0071 Score=71.85 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=39.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~ 68 (636)
.|.-++|.||||+|||++|+.++...+.++..++..++...+.+..+..+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i 535 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI 535 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH
Confidence 45568899999999999999999999988877877666666666554433
No 278
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.018 Score=64.79 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=59.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCe------EEe---eh--------hhhc-CC-CCCcHHHHHHHHHHHH--
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW------ARI---CQ--------DTIN-KG-KSGTKVQCLTSASSAL-- 75 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~------~~I---s~--------D~ir-~~-~~~~~~~~~~~~~~~L-- 75 (636)
...+..+++.|+||+||||+|+.+++.++... +.. +. |.+. +. .....+. ++.+.+.+
T Consensus 37 ~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~-IReL~e~l~~ 115 (484)
T PRK14956 37 GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIEN-IRELRDNVKF 115 (484)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHH-HHHHHHHHHh
Confidence 33466789999999999999999999876310 000 10 1110 00 0000111 12222222
Q ss_pred --hCC--CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 --KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 --~~G--~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..| +.+|||-.. ++......+++. .+....+.+|........+..++..|..
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 122 368999865 555566666666 5544444444444455566677777754
No 279
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.36 E-value=0.0086 Score=63.08 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=40.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL 88 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~ 88 (636)
.+..++|.||||+|||++|+.++..++..+..++...+. .... +......+..+..++||....
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~-l~~~l~~~~~~~vl~iDEi~~ 92 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-----KPGD-LAAILTNLEEGDVLFIDEIHR 92 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-----Cchh-HHHHHHhcccCCEEEEehHhh
Confidence 345588999999999999999999987544333322111 1111 222334456677789998653
No 280
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.36 E-value=0.036 Score=58.47 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=38.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
-+++.|+||+||||+|+.+++.+. .++..++.+.+.....+........+.+. ..|..++||...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~-a~~gvL~iDEi~ 131 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR-AMGGVLFIDEAY 131 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH-ccCcEEEEechh
Confidence 588999999999999988876542 13556666555433333222111111111 134567888753
No 281
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0064 Score=70.19 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=35.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~ 58 (636)
+..++.|+||||.|||++++.+|+.+++.|++++..=+|+
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrD 388 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRD 388 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcccc
Confidence 4468899999999999999999999999999999755554
No 282
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0078 Score=68.13 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=44.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS 72 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~ 72 (636)
-..+.-++|.||||+|||.+|++++...+.++..++.-.+...|.+..+..++.+-
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F 328 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELF 328 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHH
Confidence 34566899999999999999999999888777777766777888887766554433
No 283
>PRK08116 hypothetical protein; Validated
Probab=96.34 E-value=0.012 Score=61.59 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=58.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCC----CCCcHHHHHHHHHHHHhCCCeEEEeCCC---CC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG----KSGTKVQCLTSASSALKKGKSVFLDRCN---LE 89 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~----~~~~~~~~~~~~~~~L~~G~~VIID~tn---~~ 89 (636)
..-++|.|+||+|||.||..++..+ +.++..++...+... .......-...+.+.+.....+|||+.. .+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t 193 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT 193 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence 3458999999999999999998764 445555665443211 1000011123345566666778999952 34
Q ss_pred HHHHHHHHHh--CC--CCCeEEEEEEeCCHHHHHHHH
Q 006654 90 REQRTDFVKL--GG--PEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 90 ~~~R~~l~~l--~~--~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
.+....+..+ .. .+. ..++--+.+.+.+..+.
T Consensus 194 ~~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~ 229 (268)
T PRK08116 194 EWAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQY 229 (268)
T ss_pred HHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHH
Confidence 4555555554 22 222 23444567776665543
No 284
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.30 E-value=0.0074 Score=61.14 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=23.8
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+....++-|+|+||+||||.+..+.+.
T Consensus 115 ~~n~~~l~glag~pGtgkst~~a~v~~a 142 (323)
T KOG2702|consen 115 TSNNEELTGLAGRPGTGKSTRIAAVDNA 142 (323)
T ss_pred cccchheeeeecCCCCcchhHHHHHHhh
Confidence 3455679999999999999999998764
No 285
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.30 E-value=0.0088 Score=71.09 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=46.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHH-HHHHHHhCC-CeEEEeCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT-SASSALKKG-KSVFLDRC 86 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~-~~~~~L~~G-~~VIID~t 86 (636)
..|.-|+|.|+||+||||+++.++..++.++..++...+.....+.....+. ....+.... ..++||..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEi 280 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEI 280 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehh
Confidence 3456789999999999999999999998777778766665555454433332 333333322 34777873
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.26 E-value=0.0075 Score=63.49 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir 57 (636)
.+.+|+|+||+|+||||++.+|+..+ + .....|+.|.++
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 57799999999999999999988654 3 456778888765
No 287
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.023 Score=62.49 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
+|.+|+|+|++|+||||++.+|+..+ +.....++.|.+|
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 46789999999999999999998654 2345677888775
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.02 Score=62.58 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=46.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhcCCCCC-----------------cHHHHHHHHHHHHh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKSG-----------------TKVQCLTSASSALK 76 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir~~~~~-----------------~~~~~~~~~~~~L~ 76 (636)
...+++|+||+|+||||++.+|+..+ + .....+..|.++.+... +... +..+...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-l~~~l~~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-HHHHHHHhc
Confidence 45689999999999999999998653 3 24556777777532110 0111 123344556
Q ss_pred CCCeEEEeCCCCCH
Q 006654 77 KGKSVFLDRCNLER 90 (636)
Q Consensus 77 ~G~~VIID~tn~~~ 90 (636)
....++||..-+.+
T Consensus 215 ~~DlVLIDTaG~~~ 228 (374)
T PRK14722 215 NKHMVLIDTIGMSQ 228 (374)
T ss_pred CCCEEEEcCCCCCc
Confidence 66778999976654
No 289
>PRK08727 hypothetical protein; Validated
Probab=96.22 E-value=0.047 Score=55.75 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..++|.|++|+|||++++.++..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998654
No 290
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.029 Score=61.41 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK 58 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~ 58 (636)
..+.+++++||.|+||||++.+|+..+ +.....++.|.+|.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 457899999999999999999998654 34466788888764
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.011 Score=64.97 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=32.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc-------CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~-------~~~~~~Is~D~ir 57 (636)
..|.+|+++|++|+||||.+.+|+..+ +.....++.|.+|
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 357899999999999999999998754 2345667888775
No 292
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.04 Score=60.70 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=79.6
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC---------CC----C----cHHH----HHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---------KS----G----TKVQ----CLTSA 71 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~---------~~----~----~~~~----~~~~~ 71 (636)
....+.+|+|+|+|++|||.++.++-+-+. .+....+...+++. .+ . .+.+ ....+
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~ 103 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL 103 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence 345678999999999999999999987654 11122222222210 00 0 1112 22333
Q ss_pred HHHH--hCCCeEEEeCCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHh-cccccCCCCCCChHHHHHHHH
Q 006654 72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVK-RIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 72 ~~~L--~~G~~VIID~tn~~~~~R~~l~~l-~-~~g~~v~vV~Ld~p~e~l~~R~~~-R~~~~~~~~~~vp~evi~rm~ 145 (636)
...+ ..|...|.|.||-++..|..+... + +.+..+..+.--+.+..++.++.. +........+-..+++.+-+.
T Consensus 104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl 182 (438)
T KOG0234|consen 104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFL 182 (438)
T ss_pred HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHH
Confidence 3444 356678999999999999999999 6 677777666666777777777776 443322222333444444433
No 293
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.11 E-value=0.012 Score=65.18 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=31.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.-++|+||||+|||++|+.|++.++.++..++...+.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 4588999999999999999999998888777765553
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.06 E-value=0.0051 Score=63.19 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=21.6
Q ss_pred EEccCCCcHHHHHHHHHHHcC---CCeEEeehh
Q 006654 25 MVGAPGSGKSTFCEHVMRSSA---RPWARICQD 54 (636)
Q Consensus 25 LvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D 54 (636)
++|||||||||+++.+.+-+. ++...||.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 479999999999999887654 556667643
No 295
>PRK05642 DNA replication initiation factor; Validated
Probab=96.03 E-value=0.027 Score=57.55 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i 56 (636)
..++|.|++|+|||.|++.++... +..+..++.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 467899999999999999987542 334555665544
No 296
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.01 E-value=0.014 Score=66.33 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.|.-++|.||||+|||++|+.++..++
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 456689999999999999999999876
No 297
>CHL00176 ftsH cell division protein; Validated
Probab=96.00 E-value=0.011 Score=69.01 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=32.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.|.-++|.||||+|||++|+.++.+.+.++..++...+.
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 356689999999999999999999988777777655543
No 298
>PLN03025 replication factor C subunit; Provisional
Probab=95.98 E-value=0.03 Score=59.80 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..|. +++.||||+||||+|+.+++.+
T Consensus 33 ~~~~-lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 33 NMPN-LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 3454 6789999999999999999886
No 299
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.97 E-value=0.026 Score=58.23 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=60.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhC---CCeEEEeCCCCCH-HHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK---GKSVFLDRCNLER-EQRTDF 96 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~---G~~VIID~tn~~~-~~R~~l 96 (636)
.+|++.|++|||||+-.+.|-. +| |..+ |.+-. .....+.+.+. .... .-.|++|--++.- ..-..+
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lED-lG--yycv--DNLPp---~Llp~~~~~~~-~~~~~~~kvAv~iDiRs~~~~~~l~~~ 72 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLED-LG--YYCV--DNLPP---QLLPKLADLML-TLESRITKVAVVIDVRSREFFGDLEEV 72 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHh-cC--eeee--cCCCH---HHHHHHHHHHh-hcccCCceEEEEEecccchhHHHHHHH
Confidence 4789999999999998887754 45 5333 33310 01111222221 1111 1248889866532 222333
Q ss_pred HHh-CCC-CCeEEEEEEeCCHHHHHHHHH-hcccccCC
Q 006654 97 VKL-GGP-EVDVHAVVLDLPAKLCISRSV-KRIEHEGN 131 (636)
Q Consensus 97 ~~l-~~~-g~~v~vV~Ld~p~e~l~~R~~-~R~~~~~~ 131 (636)
+.. ++. ++.+.+++|+++.+++++|-. .|..||..
T Consensus 73 l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~ 110 (286)
T COG1660 73 LDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLS 110 (286)
T ss_pred HHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCC
Confidence 333 444 456789999999999999976 45566654
No 300
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.045 Score=63.58 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=63.5
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe--------------EEeeh--------hhhc-CC-CCCcHHHHHHH
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW--------------ARICQ--------DTIN-KG-KSGTKVQCLTS 70 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~--------------~~Is~--------D~ir-~~-~~~~~~~~~~~ 70 (636)
.....+..++|.|++|.||||+|+.|++.+.+.- +..|. |.+. +. ....-+++.+.
T Consensus 33 ~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReL 112 (700)
T PRK12323 33 EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQL 112 (700)
T ss_pred HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHH
Confidence 3445678899999999999999999999876310 00010 1111 00 00111222122
Q ss_pred HHHHH---hCC--CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 71 ASSAL---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 71 ~~~~L---~~G--~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+.... ..| +.+|||... ++......+++. .+....+.+|........+...+..|..
T Consensus 113 ie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 113 LDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred HHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 22111 122 468999865 555566666666 6654445566666666666666666654
No 301
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.95 E-value=0.013 Score=58.65 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=40.3
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
...+..++|.|+||+||||+|+.++.... ..+..++.+.+.... ..+...+.....+|||...
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~ 100 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVE 100 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChh
Confidence 34566889999999999999999987653 345556554442110 1222334445568888854
No 302
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.059 Score=61.82 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=58.6
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCe------EEee-----------hhhhc-CC--CCCcH--HHHHHHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW------ARIC-----------QDTIN-KG--KSGTK--VQCLTSASSA 74 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~------~~Is-----------~D~ir-~~--~~~~~--~~~~~~~~~~ 74 (636)
...+..+++.|+||+||||+|+.+++.+.+.. +..+ .|.+. +. ..+-. ..+...+...
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~ 114 (546)
T PRK14957 35 QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYM 114 (546)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhh
Confidence 34566789999999999999999998765210 0000 01111 10 11111 1122222211
Q ss_pred Hh--CCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 75 LK--KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 75 L~--~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
-. ..+-+|||... ++......+++. .+....+.+|........+..-+..|..
T Consensus 115 p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~ 171 (546)
T PRK14957 115 PSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCI 171 (546)
T ss_pred hhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhee
Confidence 11 23468888854 555566667666 6543334455555555544444666653
No 303
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.93 E-value=0.026 Score=58.26 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=57.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcH---HHHHHHHHHHHhCCCeEEEeCCC---CCHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK---VQCLTSASSALKKGKSVFLDRCN---LERE 91 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~---~~~~~~~~~~L~~G~~VIID~tn---~~~~ 91 (636)
..++|.|+||+|||+++.+++..+ +..+..++..++......+. ..-...+.+.+..-..+|||+.. .+.+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~ 179 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRY 179 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHH
Confidence 468999999999999999998776 33455555433321110000 01112344556666678999953 3334
Q ss_pred HHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHH
Q 006654 92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 92 ~R~~l~~l--~~~g-~~v~vV~Ld~p~e~l~~R~ 122 (636)
....+..+ .++. ....++-=+.+.+.+.+++
T Consensus 180 ~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~ 213 (244)
T PRK07952 180 EKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL 213 (244)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHh
Confidence 44444444 2222 2223444467777766544
No 304
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.91 E-value=0.027 Score=61.69 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=57.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCCCCC----------------cHHHHHHHHHHHHhC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSG----------------TKVQCLTSASSALKK 77 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~~~~----------------~~~~~~~~~~~~L~~ 77 (636)
+..+|+|+||.|.||||--.+||.++. .....|.+|.+|-+... ...+-+..+...|+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 478999999999999998888887654 34678899999865322 112234666777787
Q ss_pred CCeEEEeCCCCCHH---HHHHHHHh
Q 006654 78 GKSVFLDRCNLERE---QRTDFVKL 99 (636)
Q Consensus 78 G~~VIID~tn~~~~---~R~~l~~l 99 (636)
-+.|.||..-++.. ...++..+
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~ 306 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKEL 306 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHH
Confidence 78899999766654 44444444
No 305
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.88 E-value=0.11 Score=57.50 Aligned_cols=67 Identities=7% Similarity=0.105 Sum_probs=37.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn 87 (636)
..++|.|+||+|||+++++++..+ +..+..++.+.+......... .......+.++.-..+|||...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhh
Confidence 357899999999999999988654 334555665444211000000 0012223344445567778754
No 306
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.11 Score=52.80 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=67.8
Q ss_pred cCcc-EEEEEEccCCCcHHHHHHHHHHHcCCCe-EEeehhhh--c----------------------CCCCCcHH-----
Q 006654 17 KWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI--N----------------------KGKSGTKV----- 65 (636)
Q Consensus 17 ~~~p-~LIvLvG~PGSGKSTlAr~Lak~~~~~~-~~Is~D~i--r----------------------~~~~~~~~----- 65 (636)
++++ .-++|+|+.|+||+|+...|.++++..+ +.++.+.- | ++.+..+.
T Consensus 33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn 112 (231)
T KOG0707|consen 33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGN 112 (231)
T ss_pred CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcc
Confidence 3344 6789999999999999999999987322 22221110 0 00000000
Q ss_pred ---HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654 66 ---QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (636)
Q Consensus 66 ---~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi 141 (636)
.....+++....|+..|+|-- .+.-..++......+.+++. ++..++.+|+..|.. +.-.+.+
T Consensus 113 ~yGtsi~av~~~~~~gk~~ildId------~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt-------e~~~~l~ 179 (231)
T KOG0707|consen 113 KYGTSIAAVQRLMLSGKVCILDID------LQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGT-------ETEESLL 179 (231)
T ss_pred cCCchHHHHHHHHhcCCcceeehh------hcCceeeecCCCceEEEEecCCcchhHHHHhhccCc-------chHHHHH
Confidence 112455566677777777661 11111112233344555655 667899999999955 4667777
Q ss_pred HHHHh
Q 006654 142 NRMLQ 146 (636)
Q Consensus 142 ~rm~~ 146 (636)
+++..
T Consensus 180 ~r~~s 184 (231)
T KOG0707|consen 180 KRLKS 184 (231)
T ss_pred HHHHh
Confidence 77773
No 307
>PRK06921 hypothetical protein; Provisional
Probab=95.86 E-value=0.031 Score=58.46 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=52.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC--------
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-------- 87 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-------- 87 (636)
..-++|.|+||+|||+++.+++..+ +..+..+....+......... ......+.+..-..+|||+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~-~~~~~~~~~~~~dlLiIDDl~~~~~g~e~ 195 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFD-LLEAKLNRMKKVEVLFIDDLFKPVNGKPR 195 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHH-HHHHHHHHhcCCCEEEEeccccccCCCcc
Confidence 4568999999999999999998764 323333443222111000111 112234455666779999962
Q ss_pred CCHHHHHHHHHh--CC--CCCeEEEEEEeCCHHHHH
Q 006654 88 LEREQRTDFVKL--GG--PEVDVHAVVLDLPAKLCI 119 (636)
Q Consensus 88 ~~~~~R~~l~~l--~~--~g~~v~vV~Ld~p~e~l~ 119 (636)
.+.+....+..+ .. .+. ..+|--+.+.+.+.
T Consensus 196 ~t~~~~~~lf~iin~R~~~~k-~tIitsn~~~~el~ 230 (266)
T PRK06921 196 ATEWQIEQMYSVLNYRYLNHK-PILISSELTIDELL 230 (266)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHh
Confidence 234444444444 22 122 23444466666554
No 308
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.86 E-value=0.011 Score=60.10 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=25.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ 55 (636)
+..|.++++.|+||+||||+|+.+..+ ..+++.|.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~----~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGK----TLVLSFDM 43 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCC----CEEEeccc
Confidence 344678999999999999999998522 34455544
No 309
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.056 Score=59.67 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=25.7
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....|.-+++.||||+||||+|+.+++.+.
T Consensus 34 ~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 34 MGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred hCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 344567789999999999999999999875
No 310
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.012 Score=63.18 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=39.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~ 71 (636)
+|.=|+|-||||.|||-+|++.|.+.++.|.++..-.+-+...|.-.++++.+
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel 236 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL 236 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence 46668999999999999999999999888877776666555555444444333
No 311
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.83 E-value=0.045 Score=51.60 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=52.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehh-hh-c-CCCCCcHHHHHHHHHHHHhCCCeEEEeC--CCCCHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQD-TI-N-KGKSGTKVQCLTSASSALKKGKSVFLDR--CNLERE 91 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D-~i-r-~~~~~~~~~~~~~~~~~L~~G~~VIID~--tn~~~~ 91 (636)
+..++.++|++|||||||.+.++..... .-+.++.. .+ . ....+-..+.+..++..+.+..-+|+|. .++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 4467899999999999999999865431 11222210 00 0 0011112234456666667777889998 457778
Q ss_pred HHHHHHHh-CCCC
Q 006654 92 QRTDFVKL-GGPE 103 (636)
Q Consensus 92 ~R~~l~~l-~~~g 103 (636)
.+..+.++ ++.+
T Consensus 105 ~~~~l~~~l~~~~ 117 (144)
T cd03221 105 SIEALEEALKEYP 117 (144)
T ss_pred HHHHHHHHHHHcC
Confidence 88888777 5544
No 312
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=95.79 E-value=0.0056 Score=56.80 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=31.9
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccccc
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINK 616 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~~~ 616 (636)
..++-.+++.||+||.+|+|+-||||||+. -++++-+++|
T Consensus 47 ell~~En~~~V~fkDikPaA~~HYLvipK~-Hi~~~~~L~k 86 (166)
T KOG4359|consen 47 ELLHCENEDLVCFKDIKPAATHHYLVVPKK-HIGNCRTLRK 86 (166)
T ss_pred ceeEecCCcEEEEecCCccccceEEEechH-HcCChhhcch
Confidence 457778899999999999999999999985 3455555444
No 313
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.76 E-value=0.0096 Score=63.81 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=28.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
.-|+|.|+||+||||+++.+++.++.++..|+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~ 96 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVN 96 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 34899999999999999999999997777665
No 314
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.76 E-value=0.063 Score=57.05 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+++.||||+||||+|+.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999998764
No 315
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.76 E-value=0.12 Score=51.47 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCeEEEeC--CCCCHHHHHHHHHh----CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 69 TSASSALKKGKSVFLDR--CNLEREQRTDFVKL----GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 69 ~~~~~~L~~G~~VIID~--tn~~~~~R~~l~~l----~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..++....+....+.|- -|+.+....+..++ ...|+ .|.+.+-+..+..+...|..
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~Gt---TVl~ATHd~~lv~~~~~rvl 208 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT---TVLMATHDLELVNRMRHRVL 208 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCc---EEEEEeccHHHHHhccCcEE
Confidence 33333344444555554 47888766666555 44555 67778888888888777754
No 316
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.76 E-value=0.007 Score=61.48 Aligned_cols=35 Identities=40% Similarity=0.779 Sum_probs=27.3
Q ss_pred EEEEccCCCcHHHHHHHH---HHHcCCCeEEeehhhhc
Q 006654 23 VIMVGAPGSGKSTFCEHV---MRSSARPWARICQDTIN 57 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~L---ak~~~~~~~~Is~D~ir 57 (636)
-+++|||||||||++.-. ....|+++..+|.|--.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN 42 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN 42 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence 478999999999998764 45667778888876543
No 317
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.087 Score=63.18 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=26.8
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..+..+..++|.|+||+||||+|+.+++.+.
T Consensus 33 ~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 33 TQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 3445678889999999999999999999876
No 318
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.73 E-value=0.0098 Score=55.78 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+|+|.|.+|||||||++.+++.++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999999987
No 319
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.73 E-value=0.12 Score=58.03 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=25.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i 56 (636)
-++|.|+||+|||+|++.++..+ +..+..++.+.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 36789999999999999998754 334455555443
No 320
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.066 Score=62.33 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=26.1
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....+..+++.|+||+||||+|+.+++.+.
T Consensus 33 ~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 33 RGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344577899999999999999999999876
No 321
>PRK04296 thymidine kinase; Provisional
Probab=95.71 E-value=0.093 Score=51.90 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=52.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh--hhh---c---CCC--------CCcHHHHHHHHHHHHhCC--
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--DTI---N---KGK--------SGTKVQCLTSASSALKKG-- 78 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~--D~i---r---~~~--------~~~~~~~~~~~~~~L~~G-- 78 (636)
..++++.|+||+||||++..++.++ +..+..+.. |.- . ... .......+..+.+ ..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 4688999999999999999988765 333444422 211 0 000 0011222333333 233
Q ss_pred CeEEEeCCCCC-HHHHHHHHHh-CCCCCeEEEEEEe
Q 006654 79 KSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLD 112 (636)
Q Consensus 79 ~~VIID~tn~~-~~~R~~l~~l-~~~g~~v~vV~Ld 112 (636)
.-||||-..+- .++-..+.+. +..+..+.+.-++
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 34899997654 4555667666 7777765554444
No 322
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.013 Score=63.20 Aligned_cols=52 Identities=12% Similarity=0.299 Sum_probs=42.4
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL 68 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~ 68 (636)
-.+|.-|+|.||||+|||-+|++++++.+.++.-++...+...|++....+.
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHH
Confidence 3467889999999999999999999999987877776677677777665543
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.71 E-value=0.096 Score=52.09 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+|+++|++||||||+.+.++....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999887664
No 324
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.057 Score=61.48 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.2
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....+..+++.|+||+||||+|+.+++.+.
T Consensus 32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445678899999999999999999998864
No 325
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.091 Score=59.85 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.8
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....+..++|.|+||+||||+|+.+++.++
T Consensus 39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 344467789999999999999999999876
No 326
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.053 Score=63.89 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=59.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEeeh--------hhhc-CC-CCCcHHHHHHHHHHHH-
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARICQ--------DTIN-KG-KSGTKVQCLTSASSAL- 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is~--------D~ir-~~-~~~~~~~~~~~~~~~L- 75 (636)
....+..++|.|++|+||||+++.|++.+.+.. +..|. |.+. +. .....+++...+....
T Consensus 34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~ 113 (830)
T PRK07003 34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVY 113 (830)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHh
Confidence 344577889999999999999999999875210 00111 1111 00 0001112212222111
Q ss_pred ----hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 ----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 ----~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+.+|||... ++......+++. .+....+.+|+.......+..-+..|..
T Consensus 114 ~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq 171 (830)
T PRK07003 114 APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCL 171 (830)
T ss_pred ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheE
Confidence 123568999865 444444556666 5544344555555555555555666654
No 327
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.62 E-value=0.016 Score=62.83 Aligned_cols=43 Identities=19% Similarity=0.440 Sum_probs=32.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSG 62 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~ 62 (636)
.+.|+|+||||+|||.+|-.+++++| .||+.++.-+++.....
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 46788999999999999999999998 58999998887654433
No 328
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.07 Score=64.11 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=62.1
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCC---------eEEee----------hhhhc-CC-CCCcHHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---------WARIC----------QDTIN-KG-KSGTKVQCLTSASSA 74 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---------~~~Is----------~D~ir-~~-~~~~~~~~~~~~~~~ 74 (636)
....+..++|.|++|+||||+|+.|++.+.+. .+..| .|.+. +. ....-+++.....+.
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~ 112 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERA 112 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHH
Confidence 34456678999999999999999999987521 00001 11111 11 111122222211111
Q ss_pred ----H-hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 75 ----L-KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 75 ----L-~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+ ...+.+|||... ++......++++ .+....+++|++....+.+..-+..|..
T Consensus 113 ~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~ 172 (824)
T PRK07764 113 FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH 172 (824)
T ss_pred HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence 1 233468999864 555666667777 6655555566555555556666666654
No 329
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.60 E-value=0.012 Score=56.37 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=20.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEe
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARI 51 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~I 51 (636)
|+|+|.||+||||+++.|++. + +..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g--~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-G--YPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T---EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-C--CeEE
Confidence 789999999999999999988 6 4444
No 330
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.59 E-value=0.14 Score=57.38 Aligned_cols=65 Identities=8% Similarity=0.122 Sum_probs=36.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRC 86 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~t 86 (636)
-++|.|+||+|||+|++.++... +..+..++.+.+......... .......+.++.-..+|||..
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi 220 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDI 220 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehh
Confidence 47899999999999999998765 223445555443211100000 011223344455556777774
No 331
>PF05729 NACHT: NACHT domain
Probab=95.59 E-value=0.0095 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+++++.|.||+||||+++.++...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 368999999999999999988664
No 332
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.062 Score=61.26 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=59.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEeeh--------hhhc-CC-CCCcHHHHHHHHHHHH-
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARICQ--------DTIN-KG-KSGTKVQCLTSASSAL- 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is~--------D~ir-~~-~~~~~~~~~~~~~~~L- 75 (636)
....+..+++.|+||+||||+|+.+++.+.+.- +..+. |.+. +. .....+.+ +.+.+.+
T Consensus 34 ~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~ 112 (509)
T PRK14958 34 QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIP 112 (509)
T ss_pred hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHh
Confidence 345577889999999999999999999875210 00010 1111 00 00111111 2222222
Q ss_pred ---hCC--CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 ---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 ---~~G--~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..| +.+|||... ++......+++. .+....+.+|....+...+..-+..|..
T Consensus 113 ~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~ 171 (509)
T PRK14958 113 YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCL 171 (509)
T ss_pred hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhh
Confidence 122 468999975 455555666666 5544444555555555444444555543
No 333
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.58 E-value=0.057 Score=60.23 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=29.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir 57 (636)
..+++++||+|+||||.+.+|+..+ +.....|+.|.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 4589999999999999998887543 2346678888764
No 334
>PLN02796 D-glycerate 3-kinase
Probab=95.57 E-value=0.015 Score=62.81 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=30.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~D~i 56 (636)
..|.+|.++|++||||||+++.|...+.. ....|+.|.+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 46889999999999999999999877642 2345555544
No 335
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.088 Score=62.35 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=46.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhcCCC----------C-------CcHHHHHHHHHHHHh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGK----------S-------GTKVQCLTSASSALK 76 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir~~~----------~-------~~~~~~~~~~~~~L~ 76 (636)
.+.+|+|+||.|+||||.+.+|+..+ + .....++.|.+|.+. . .+... +..+.+.++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~~ 262 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALG 262 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHhc
Confidence 36799999999999999999988654 2 245567777765221 0 01222 234445556
Q ss_pred CCCeEEEeCCCCCH
Q 006654 77 KGKSVFLDRCNLER 90 (636)
Q Consensus 77 ~G~~VIID~tn~~~ 90 (636)
....||||+..+.+
T Consensus 263 ~~D~VLIDTAGRs~ 276 (767)
T PRK14723 263 DKHLVLIDTVGMSQ 276 (767)
T ss_pred CCCEEEEeCCCCCc
Confidence 66679999976554
No 336
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.55 E-value=0.014 Score=56.98 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=25.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
++++.|+||||||+||.+++...+.+...+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 47899999999999999999876645555543
No 337
>PRK09183 transposase/IS protein; Provisional
Probab=95.54 E-value=0.045 Score=56.94 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=51.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH--HHHHHHHHHHhCCCeEEEeCCC---CCHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCN---LERE 91 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~--~~~~~~~~~L~~G~~VIID~tn---~~~~ 91 (636)
...++|+|+||+|||++|..++... +..+..++...+......... .........+.....+|||... ++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence 4568899999999999999996542 323333443222111000000 0111222224444568999954 4444
Q ss_pred HHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHH
Q 006654 92 QRTDFVKL--GGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 92 ~R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
....+..+ ..+.....++-=+.+.+.+.++.
T Consensus 182 ~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 182 EANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHh
Confidence 44445454 22221223444466666655443
No 338
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.51 E-value=0.016 Score=63.96 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i 56 (636)
..+|.+|.+.|++||||||+++.|...+. .....|+.|++
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 34789999999999999999999976653 22556676665
No 339
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.51 E-value=0.034 Score=61.49 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=30.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCe-EEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~-~~Is~D~ir 57 (636)
....|+++|.+|||||||+++|++.++..+ ..+.++.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 356799999999999999999999988543 334555554
No 340
>PRK09169 hypothetical protein; Validated
Probab=95.49 E-value=0.028 Score=71.79 Aligned_cols=98 Identities=10% Similarity=-0.052 Sum_probs=64.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-----------C-CcHHHHHHHHHHHHhCCCeEEEeCC--
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-----------S-GTKVQCLTSASSALKKGKSVFLDRC-- 86 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-----------~-~~~~~~~~~~~~~L~~G~~VIID~t-- 86 (636)
.-|+|+|++|+||||+++.|+..++..+ ++.|...... . ...+.....+.+.++ ..+||..-
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~F--iDtD~kIeks~GrkI~rIFa~eG~FRe~Eaa~V~Dllr--~~vVLSTGGG 2186 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDK--PHSVRKIAKKIGKKIARIQALRGLSPEQAAARVRDALR--WEVVLPAEGF 2186 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCc--cccHHHHHHHhCCCHHHHHHhcCchHHHHHHHHHHHhc--CCeEEeCCCC
Confidence 3589999999999999999999998444 5655443211 1 122233355555554 45666653
Q ss_pred -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 87 -n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
....+.|..+ +..|+ +||+..+.+.+.+|......+
T Consensus 2187 av~~~enr~~L---~~~Gl---vV~L~an~~tl~~Rty~g~NR 2223 (2316)
T PRK09169 2187 GAAVEQARQAL---GAKGL---RVMRINNGFAAPDTTYAGLNV 2223 (2316)
T ss_pred cccCHHHHHHH---HHCCE---EEEEECCHHHHHHHhccCCCC
Confidence 3444555444 55666 889999999998888655443
No 341
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.49 E-value=0.014 Score=57.22 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=53.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc----CCC-CCcHHHHHHHHHHHHhCCCeEEEeCCCCC-
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN----KGK-SGTKVQCLTSASSALKKGKSVFLDRCNLE- 89 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir----~~~-~~~~~~~~~~~~~~L~~G~~VIID~tn~~- 89 (636)
...-++|.|+||+|||.+|..++.+. +.....++...+. ... .+.. ......+..-..+|||+.-..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~----~~~~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSY----EELLKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTH----CHHHHHHHTSSCEEEETCTSS-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccch----hhhcCccccccEecccccceee
Confidence 34568999999999999999987653 4445556654442 221 1111 223455666678999995443
Q ss_pred --HHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 90 --REQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 90 --~~~R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
.+.+..+.++ .+++....+|-=+.+.+.+.+....|
T Consensus 122 ~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDR 161 (178)
T ss_dssp --HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT-----
T ss_pred ecccccccchhhhhHhhcccCeEeeCCCchhhHhhccccc
Confidence 3344333333 22222233444466666666555544
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.47 E-value=0.035 Score=54.50 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=49.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehhhh---cCCCCCc--HHHHHHHHHHHHhCCCeEEEeC--CCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTI---NKGKSGT--KVQCLTSASSALKKGKSVFLDR--CNLE 89 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D~i---r~~~~~~--~~~~~~~~~~~L~~G~~VIID~--tn~~ 89 (636)
+..++.|+|+.|||||||.+.++..... ..+.++.-.+ .+...-+ ..+.+..++..+.....+++|- ..+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 4568899999999999999998865431 1233332111 1111011 2334566666667778889998 3577
Q ss_pred HHHHHHHHHh
Q 006654 90 REQRTDFVKL 99 (636)
Q Consensus 90 ~~~R~~l~~l 99 (636)
...+..+.++
T Consensus 104 ~~~~~~l~~~ 113 (177)
T cd03222 104 IEQRLNAARA 113 (177)
T ss_pred HHHHHHHHHH
Confidence 7777665555
No 343
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.04 Score=58.29 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=44.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL 75 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L 75 (636)
.|..+.|.||||.|||-+|+.+++..+..+..+....+-.+..|...++++..-+..
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA 221 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA 221 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH
Confidence 577889999999999999999999999878777777777777776655544333333
No 344
>PRK08181 transposase; Validated
Probab=95.44 E-value=0.036 Score=58.12 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=55.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC---CCHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN---LEREQ 92 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn---~~~~~ 92 (636)
..-++|+|+||+|||.+|..++... +..+..++...+.+....... .-.....+.+..-..+|||... .+.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~ 185 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAE 185 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHH
Confidence 3458999999999999999998543 333444454333221100000 0112234455666779999853 34455
Q ss_pred HHHHHHh--CCCCCeEEEEEEeCCHHHHHHH
Q 006654 93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISR 121 (636)
Q Consensus 93 R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R 121 (636)
...+..+ ..++....+|--+.+...+..+
T Consensus 186 ~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~ 216 (269)
T PRK08181 186 TSVLFELISARYERRSILITANQPFGEWNRV 216 (269)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCHHHHHHh
Confidence 5555555 2222223344446666655543
No 345
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.044 Score=62.31 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=30.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir 57 (636)
...+|+|+|++|+||||++.+|+..+ +.....++.|.++
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 35789999999999999999988643 2345677887765
No 346
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.097 Score=59.33 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=61.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCC---------eEEee--------hhhhc-CCC-CCcHHHHHHHHHHHH-
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---------WARIC--------QDTIN-KGK-SGTKVQCLTSASSAL- 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---------~~~Is--------~D~ir-~~~-~~~~~~~~~~~~~~L- 75 (636)
...-+.-+++.|+||+||||+|+.+++.+.+. .+..| .|.+. +.. ...-+++ +.+.+..
T Consensus 31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddI-R~Iie~~~ 109 (491)
T PRK14964 31 LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDI-KVILENSC 109 (491)
T ss_pred cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHH-HHHHHHHH
Confidence 34456678999999999999999999865310 00001 11111 110 0111221 2222222
Q ss_pred -----hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 76 -----~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
...+-+|||... ++......+++. .+....+.+|+.....+-+...+..|...
T Consensus 110 ~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~ 169 (491)
T PRK14964 110 YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQR 169 (491)
T ss_pred hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhee
Confidence 233568999864 455555566666 55444445555555555666777777653
No 347
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.14 Score=59.24 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=62.1
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcCCC---------eEEee----------hhhhc-CC-CCCcHHH---HHHH
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---------WARIC----------QDTIN-KG-KSGTKVQ---CLTS 70 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---------~~~Is----------~D~ir-~~-~~~~~~~---~~~~ 70 (636)
.....+..+++.|++|+||||+|+.+++.+.+. .+..+ .|.+. ++ ....-++ +...
T Consensus 30 ~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~ 109 (584)
T PRK14952 30 DAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDR 109 (584)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHH
Confidence 344567788999999999999999999886521 00001 11111 11 0111112 1122
Q ss_pred HHHH--HhCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 71 ASSA--LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 71 ~~~~--L~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+... ....+.+|||... ++......+++. .+....+.+|.+....+.+..-+..|..
T Consensus 110 ~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~ 170 (584)
T PRK14952 110 AFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH 170 (584)
T ss_pred HHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence 2111 1234578999875 455555566666 6554455555555555555666666654
No 348
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.36 E-value=0.04 Score=59.40 Aligned_cols=101 Identities=9% Similarity=0.103 Sum_probs=56.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC----CCcHHHHHHHHHHHHhCCCeEEEeCC---CCCH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRC---NLER 90 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~----~~~~~~~~~~~~~~L~~G~~VIID~t---n~~~ 90 (636)
.-++|.|+||+|||+||.+++..+ +..+..++.+++.... ....... ....+.+..-..+|||+. ..+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~DLLIIDDlG~e~~t~ 262 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKEL-EEVYDLLINCDLLIIDDLGTEKITE 262 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhH-HHHHHHhccCCEEEEeccCCCCCCH
Confidence 568999999999999999998765 3334445554442211 0000111 111455566677899994 3445
Q ss_pred HHHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHH
Q 006654 91 EQRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 91 ~~R~~l~~l--~~~g-~~v~vV~Ld~p~e~l~~R~ 122 (636)
+....+..+ .... ....+|--+.+.+.+..+.
T Consensus 263 ~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 555555555 2211 1223444566666665443
No 349
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.34 E-value=0.19 Score=50.90 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=58.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhc--------CC----------------------CCC---c
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN--------KG----------------------KSG---T 63 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir--------~~----------------------~~~---~ 63 (636)
.++|.|++|+|||.|.++++.+. +..+..++.+.+. .+ ..+ .
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence 36899999999999999986542 2334556543321 00 000 1
Q ss_pred HHHHHHHHHHHHhCCCeEEEeC-CCCCH-H-HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHH
Q 006654 64 KVQCLTSASSALKKGKSVFLDR-CNLER-E-QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (636)
Q Consensus 64 ~~~~~~~~~~~L~~G~~VIID~-tn~~~-~-~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~ev 140 (636)
...++.........|+.+|+.+ ..... . ...++...-..|. ++-+..|.+....++..+...... -.+++++
T Consensus 116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl---~~~l~~pd~~~r~~il~~~a~~~~--~~l~~~v 190 (219)
T PF00308_consen 116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL---VVELQPPDDEDRRRILQKKAKERG--IELPEEV 190 (219)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE---EEEE----HHHHHHHHHHHHHHTT----S-HHH
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc---hhhcCCCCHHHHHHHHHHHHHHhC--CCCcHHH
Confidence 1234455556667777777655 11111 0 1111211112233 455666665544444443322111 1578888
Q ss_pred HHHHHhhh
Q 006654 141 VNRMLQKK 148 (636)
Q Consensus 141 i~rm~~~f 148 (636)
++-+.+++
T Consensus 191 ~~~l~~~~ 198 (219)
T PF00308_consen 191 IEYLARRF 198 (219)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 88877765
No 350
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.34 E-value=0.013 Score=54.51 Aligned_cols=30 Identities=37% Similarity=0.643 Sum_probs=22.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
++|.|+||.||||+++.+++..+..+.+|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq 31 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ 31 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence 689999999999999999999987776663
No 351
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.078 Score=58.94 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=44.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhcCCCC----------C-------cHHHHHHHHHHHHh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS----------G-------TKVQCLTSASSALK 76 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir~~~~----------~-------~~~~~~~~~~~~L~ 76 (636)
++.++.|+|++|+||||+..+|+..+ + .....+..|.++-+.. + .... ...+...++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~d-l~~al~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHH-HHHHHHHhc
Confidence 45789999999999999999998653 2 2334455566542210 0 1112 234444566
Q ss_pred CCCeEEEeCCCCCH
Q 006654 77 KGKSVFLDRCNLER 90 (636)
Q Consensus 77 ~G~~VIID~tn~~~ 90 (636)
....++||..-+.+
T Consensus 269 ~~d~VLIDTaGrsq 282 (420)
T PRK14721 269 GKHMVLIDTVGMSQ 282 (420)
T ss_pred CCCEEEecCCCCCc
Confidence 66778999865554
No 352
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.30 E-value=0.11 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHc
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+++.|+||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999875
No 353
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.026 Score=66.28 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG 59 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~ 59 (636)
|+=++|+||||+|||-||+++|.+.+.||..++.-++-+.
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 6668999999999999999999999999988887665443
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.26 E-value=0.1 Score=59.04 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=30.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir 57 (636)
++.+++|+||+|+||||.+.+|+..+ + ..+..++.|.+|
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 45799999999999999999998654 2 245567777764
No 355
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.25 E-value=0.035 Score=58.08 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=46.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD 95 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~ 95 (636)
.--++|.||||-||||+|..++.+++..+...+.-.+. ..--+..+...|+.|..+.||-.+.-...-++
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE 121 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPAVEE 121 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------ChhhHHHHHhcCCcCCeEEEehhhhcChhHHH
Confidence 34689999999999999999999999555444433221 11112444566788888888886655544443
No 356
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.24 E-value=0.014 Score=58.93 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
.+..+++++||+|||||||.|.+-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3567899999999999999999863
No 357
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.24 E-value=0.28 Score=48.10 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=59.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee-hhhhcC---CCC-----------CcHHHHHHHHHHHHhCCCeE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINK---GKS-----------GTKVQCLTSASSALKKGKSV 81 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is-~D~ir~---~~~-----------~~~~~~~~~~~~~L~~G~~V 81 (636)
....++++|++||||||+.+.|...... ....+. ...+.. .+. .........+...++....+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 4568999999999999999999876542 222221 122211 000 00112335555667766666
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccc
Q 006654 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH 128 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~ 128 (636)
|+=+.-+..+.+. +++....|..-.+-.+. -+.....+|+..+...
T Consensus 104 i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~ 150 (186)
T cd01130 104 IIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSN 150 (186)
T ss_pred EEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhh
Confidence 6666566666543 33331222220122232 3456677888877664
No 358
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.24 E-value=0.019 Score=56.33 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
++.++.++|++|||||||++++...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 566899999999999999999987764
No 359
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.23 E-value=0.022 Score=52.73 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+...+|+|.|.-|||||||+|.+++.++
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999999887
No 360
>PF13245 AAA_19: Part of AAA domain
Probab=95.22 E-value=0.018 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
..++++.|+|||||||.+..++.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999955555443
No 361
>PRK06526 transposase; Provisional
Probab=95.22 E-value=0.03 Score=58.11 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=50.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcH-HHHHHHHHHHHhCCCeEEEeCCCC---CHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCNL---EREQ 92 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~-~~~~~~~~~~L~~G~~VIID~tn~---~~~~ 92 (636)
+.-++|+|+||+|||++|..++... +..+..++...+.+...... ..........+..-..+|||.... ..+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~ 177 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEA 177 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHH
Confidence 4568999999999999999987653 32222222222211000000 000111223344445689999653 3455
Q ss_pred HHHHHHh--CCCCCeEEEEEEeCCHHHHHH
Q 006654 93 RTDFVKL--GGPEVDVHAVVLDLPAKLCIS 120 (636)
Q Consensus 93 R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~ 120 (636)
+..+..+ ..+.....++.-+.|...+.+
T Consensus 178 ~~~L~~li~~r~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 178 ANLFFQLVSSRYERASLIVTSNKPFGRWGE 207 (254)
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCCHHHHHH
Confidence 5444444 222222234445667665443
No 362
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.20 E-value=0.03 Score=60.24 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=40.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCCcHHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSAL 75 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L 75 (636)
.+-|+++||||+|||-+|-.+++++| .||+-++...++.....-.+.+.+.+++++
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraI 122 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAI 122 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHhh
Confidence 35689999999999999999999998 578888877776544333333444444444
No 363
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.19 E-value=0.019 Score=63.70 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=28.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
.-++|.||||+|||++|+.|++.++.++..++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 468999999999999999999998866755554
No 364
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.18 E-value=0.033 Score=65.25 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=32.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~ 58 (636)
|.=|+|+|+||+||||+++.++.+.+.++..++...+..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 344899999999999999999999998887777655543
No 365
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.16 E-value=0.16 Score=58.95 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=25.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhh
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI 56 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~i 56 (636)
++|.|.+|+|||.|+..++... +..+..++.+.+
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 7999999999999999998754 223445555443
No 366
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.092 Score=61.36 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=25.8
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....+..+++.|++|+||||+|+.+++.+.
T Consensus 34 ~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 34 LGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 344567789999999999999999999876
No 367
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.10 E-value=0.23 Score=55.70 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
-++|.|+||+|||++++.++..+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Confidence 48999999999999999988753
No 368
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.10 E-value=0.22 Score=53.47 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=25.0
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+..+..++|.|+||+||||+|+.+++.+.
T Consensus 33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 33 GRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567889999999999999999998864
No 369
>PRK13768 GTPase; Provisional
Probab=95.09 E-value=0.024 Score=58.68 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ 55 (636)
|+.++++.|++||||||++..++..+ |.+...++.|-
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 56789999999999999998887544 45566676553
No 370
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.08 E-value=0.23 Score=50.27 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=27.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~ 53 (636)
.+..++++.|+||+|||||+.+++... +.+...++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 355799999999999999999886543 445555663
No 371
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.05 E-value=0.022 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
++++.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998765
No 372
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.05 E-value=0.15 Score=51.50 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~ 53 (636)
...++|.|+||+|||++|+.++... +..+..++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 4568999999999999999998764 234555554
No 373
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.03 E-value=0.083 Score=56.79 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~ 53 (636)
+...++.+.|+|||||||||-+++... +..+..|+.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 345689999999999999999987543 444556664
No 374
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=95.02 E-value=0.022 Score=50.48 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=29.3
Q ss_pred CCCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 575 KDDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 575 ~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
+..++|.+++++++.|.||++..|+||+||.-
T Consensus 15 ~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h 46 (104)
T cd01278 15 PEDQVYEDDRVVVFKDIYPKARHHYLVIPKEH 46 (104)
T ss_pred CccEEEeCCCEEEEECCCCCCCceEEEEecCC
Confidence 34599999999999999999999999999974
No 375
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.02 E-value=0.18 Score=49.40 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.3
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...-+..+++.|+||+||||+|+.+++.+.
T Consensus 10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 10 KGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 334567899999999999999999998863
No 376
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.02 E-value=0.023 Score=58.76 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=41.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
++..++++.|+||||||+|+.+++... |.+...++.+.-.........+.--........|...|+|...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~ 93 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL 93 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence 566789999999999999999987543 3445556554321110001111101112556777888888843
No 377
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.01 E-value=0.069 Score=56.83 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
++.+|+++||.|||||-+|-.|+++++ ..+||.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~--~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLG--GEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcC--CcEEecchh
Confidence 467899999999999999999999998 556776654
No 378
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.01 E-value=0.029 Score=50.64 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
...+.|+|++||||||+++.+. .+ ...++.|++
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G--~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KR--KHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CC--eEEEeeEeH
Confidence 4678999999999999999987 23 344554443
No 379
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.98 E-value=0.24 Score=51.45 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=34.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
..|+-|++-||||.|||-+|++|+.+...++.++..-.+.
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 4688899999999999999999999988778777765543
No 380
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.98 E-value=0.019 Score=55.20 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=19.3
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....+.++++.|++|+||||+.+++.+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344578899999999999999999876654
No 381
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=94.96 E-value=0.023 Score=68.38 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
..+|.+-|||||||||+|+.|++.++ +.+++++.++
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~--~~~~~~g~~y 69 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLG--AQCLNTGSFY 69 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHH
Confidence 35899999999999999999999999 6678876653
No 382
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.93 E-value=0.021 Score=58.74 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=24.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..+.+++++|++||||||+++.++..+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455789999999999999999998765
No 383
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.028 Score=57.79 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=33.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~ 62 (636)
+|+=++|.||||+|||-++++.+......|.++....+-....|
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 56778999999999999999999877666766665555443333
No 384
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.92 E-value=0.018 Score=63.47 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..=|++.|+||+||||||++|++-+.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHH
Confidence 34488999999999999999997654
No 385
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=94.92 E-value=0.073 Score=56.63 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=28.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+.+|+++||.|||||.+|-.|++..+ ..||.|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~---eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKA---EIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC---cEEeccHH
Confidence 44899999999999999999999943 56777665
No 386
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.89 E-value=0.027 Score=60.66 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=29.6
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ 55 (636)
.+++.+|.+.|+||||||||+..|...+ +.....++.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4578899999999999999999977554 33455555443
No 387
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.035 Score=62.30 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=32.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
|+=|+|+||||.|||-|||+++-+.+.||.+.+..++.
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 67789999999999999999999999888777654443
No 388
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.86 E-value=0.14 Score=60.12 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=26.6
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.....+..++|.|++|+||||+|+.|++.+.
T Consensus 33 ~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 33 DEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3445678899999999999999999999865
No 389
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.85 E-value=0.1 Score=50.10 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=48.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehhhhc--------CCCC-----Cc--HHHHHHHHHHHHhCCCeE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN--------KGKS-----GT--KVQCLTSASSALKKGKSV 81 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D~ir--------~~~~-----~~--~~~~~~~~~~~L~~G~~V 81 (636)
+..++.|+|++|||||||.+.++..... .-+.++...+. .... -+ ..+.+..++..+...+-+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4467899999999999999999865431 12333321111 0000 01 123345555556666778
Q ss_pred EEeC--CCCCHHHHHHHHHh
Q 006654 82 FLDR--CNLEREQRTDFVKL 99 (636)
Q Consensus 82 IID~--tn~~~~~R~~l~~l 99 (636)
++|- ..+....+..+.++
T Consensus 105 llDEP~~~LD~~~~~~l~~~ 124 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKV 124 (163)
T ss_pred EEECCCcCCCHHHHHHHHHH
Confidence 8888 34677777776665
No 390
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.83 E-value=0.18 Score=48.51 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=49.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEe---------ehhhhcC------C----CC--Cc--HHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARI---------CQDTINK------G----KS--GT--KVQCLTSASS 73 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~I---------s~D~ir~------~----~~--~~--~~~~~~~~~~ 73 (636)
+..++.++|++|||||||.+.++..... ..+.+ .++.... . .. -+ ..+.+..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999865431 11112 1221100 0 00 01 1233455555
Q ss_pred HHhCCCeEEEeC--CCCCHHHHHHHHHh-CCCC
Q 006654 74 ALKKGKSVFLDR--CNLEREQRTDFVKL-GGPE 103 (636)
Q Consensus 74 ~L~~G~~VIID~--tn~~~~~R~~l~~l-~~~g 103 (636)
.+...+-+|+|- ..+....+..+.++ .+.+
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 138 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHhC
Confidence 566667788887 35667777777777 5443
No 391
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.82 E-value=0.02 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHcC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
|+|.|+||.|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987754
No 392
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.82 E-value=0.061 Score=64.46 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=29.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
...++|+||||+||||+|+.+++.++.++..++.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC
Confidence 3478999999999999999999999877877763
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.81 E-value=0.058 Score=54.43 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=26.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeeh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~ 53 (636)
++..++++.|+||+|||||+.+++.. .+.....++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35678999999999999999987643 2333445554
No 394
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.81 E-value=0.055 Score=64.41 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+.-++|+|+||+|||++++.++++.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3357899999999999999999876
No 395
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.80 E-value=0.043 Score=53.58 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC----CeEEeehhhhcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINK 58 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~----~~~~Is~D~ir~ 58 (636)
...++|+||+|+|||.+|+.|++.+.. ++..+|...+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 356899999999999999999998873 567777666644
No 396
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.083 Score=59.37 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=64.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCC-eEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL- 99 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l- 99 (636)
=|+|.||||+|||-+||++-+.++.+ --.++.-.+-+...|..+.. ++...+ ..-++|..+
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~N---vR~LFa--------------DAEeE~r~~g 320 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEEN---VRKLFA--------------DAEEEQRRLG 320 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHH---HHHHHH--------------hHHHHHHhhC
Confidence 47899999999999999999988732 23455444444333433221 111111 123345555
Q ss_pred CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654 100 GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (636)
Q Consensus 100 ~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe 149 (636)
...+ .++|.||-=+.+|.+|=..+... .|.+.++.+++..+.
T Consensus 321 ~~Sg--LHIIIFDEiDAICKqRGS~~g~T------GVhD~VVNQLLsKmD 362 (744)
T KOG0741|consen 321 ANSG--LHIIIFDEIDAICKQRGSMAGST------GVHDTVVNQLLSKMD 362 (744)
T ss_pred ccCC--ceEEEehhhHHHHHhcCCCCCCC------CccHHHHHHHHHhcc
Confidence 4443 46778887778888775544432 688888888887663
No 397
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.76 E-value=0.094 Score=54.32 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
....+|.+.|++|+||||+|.++++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 67889999999999999999999866
No 398
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.76 E-value=0.14 Score=55.65 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+..+..+++.|+||+||||+|+.+++...
T Consensus 35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 35 NNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344567899999999999999999998765
No 399
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.75 E-value=0.21 Score=57.77 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=24.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+.-+++.||||+||||+|+.+++.+.
T Consensus 35 ~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34466789999999999999999999864
No 400
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.74 E-value=0.06 Score=55.00 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=39.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCCCcHHHHHHH-------HHHHHhCCCeEEEeCCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTS-------ASSALKKGKSVFLDRCN 87 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~~~~~~~~~~-------~~~~L~~G~~VIID~tn 87 (636)
++..++++.|+||||||+||.+++.. .+.+...++.++ +..++.+. +.+....|+..++|...
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee-------~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~ 91 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE-------HPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFT 91 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC-------CHHHHHHHHHHhCCCHHHHhhcCCEEEEeccc
Confidence 35679999999999999999987654 233445555432 11122211 12344667778888743
No 401
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.22 Score=57.14 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.3
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+..+++.|+||+||||+|+.+++.+.
T Consensus 35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 35 QRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567789999999999999999999875
No 402
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.63 E-value=0.054 Score=54.58 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=35.5
Q ss_pred CCCccchhhhhhhcc---ccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 1 MDTDIDDTCKAKDEE---KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
||+.+...+..-... .-+...++.+.|+||+|||++|.+++... +.....++.+
T Consensus 1 ~~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 1 MDERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455555544443321 22456799999999999999999998643 3445556655
No 403
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.63 E-value=0.023 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=26.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~ 53 (636)
++..++++.|+||||||+||.+++... +.+...++.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 456789999999999999999976432 545555654
No 404
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.17 Score=58.68 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=40.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEE
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVF 82 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VI 82 (636)
+.=|+|-||||+|||.+|.+++...+..+..+-.-++-....|..++.++.+-+..+.-++.|
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCi 763 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCI 763 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeE
Confidence 345899999999999999999999884454444444444445555554444444444444443
No 405
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.52 E-value=0.16 Score=54.30 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=61.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcH-HHHHHHHHHHHhCCCeEEEeCC---CCCHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRC---NLERE 91 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~-~~~~~~~~~~L~~G~~VIID~t---n~~~~ 91 (636)
...-++|.|+||+|||+++.+++..+ +..+..+....+........ ..-.....+.+..-..+|||+. +.+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~ 234 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSW 234 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHH
Confidence 34568999999999999999998775 33344444333211100000 0011233455667778999994 46677
Q ss_pred HHHHHHH-h--CC-CCCeEEEEEEeCCHHHHHHHHH
Q 006654 92 QRTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 92 ~R~~l~~-l--~~-~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
.|..++. + .+ ......++-=+.+.+.+.++..
T Consensus 235 ~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 235 VRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 7754433 2 22 1223345555788888887764
No 406
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.29 Score=57.08 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.2
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....+..+++.|++|+||||+|+.+++.+.
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445677899999999999999999998875
No 407
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=94.51 E-value=0.23 Score=50.85 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=72.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHH----HHHHHHHHHH-hCCCeEEEeCCCCCHH-
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV----QCLTSASSAL-KKGKSVFLDRCNLERE- 91 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~----~~~~~~~~~L-~~G~~VIID~tn~~~~- 91 (636)
..|.||+|-|..||||+...+.|...+......+.. +.. .+.. -.+-..-+.| ..|.-.|.|+.-+...
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~--~~~---pt~eE~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~l 103 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVA--LPK---PSDRERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAG 103 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEe--CCC---CCHHHHcChHHHHHHHhCCCCCeEEEEeCchhhhHH
Confidence 469999999999999999999999988754444432 100 0000 1223333444 5666677777433331
Q ss_pred ------------------HHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 92 ------------------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 92 ------------------~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
+-..|.+. ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus 104 v~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~ 161 (230)
T TIGR03707 104 VERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPL 161 (230)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 11234455 6789988889999999999999999987654
No 408
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.51 E-value=0.23 Score=57.68 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=25.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+..++|.|+||+||||+|+.+++.+.
T Consensus 35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 35 GRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567789999999999999999998875
No 409
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.27 Score=57.36 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=25.3
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..-+.-+++.|+||+||||+|+.+++.+.
T Consensus 35 ~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 35 DRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566789999999999999999999876
No 410
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.46 E-value=0.1 Score=55.96 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=26.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~ 53 (636)
+..++.+.|+|||||||||-+++... +..+..|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 45789999999999999999876543 334555654
No 411
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.2 Score=47.46 Aligned_cols=80 Identities=24% Similarity=0.250 Sum_probs=46.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehhhhc--------CCC-----CCc-HHHHHHHHHHHHhCCCeEEE
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN--------KGK-----SGT-KVQCLTSASSALKKGKSVFL 83 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D~ir--------~~~-----~~~-~~~~~~~~~~~L~~G~~VII 83 (636)
..++.++|++|||||||.+.++..... ..+.++...+. ... ... ..+....+...+.....+|+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 368899999999999999999865431 12223221111 000 001 12233455555566677888
Q ss_pred eC--CCCCHHHHHHHHHh
Q 006654 84 DR--CNLEREQRTDFVKL 99 (636)
Q Consensus 84 D~--tn~~~~~R~~l~~l 99 (636)
|- ..+....+..+.++
T Consensus 105 DEp~~~lD~~~~~~l~~~ 122 (157)
T cd00267 105 DEPTSGLDPASRERLLEL 122 (157)
T ss_pred eCCCcCCCHHHHHHHHHH
Confidence 88 34666666666555
No 412
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.098 Score=54.33 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=49.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH--HHHHHHHHHHhCCCeEEEeCC---CCCH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRC---NLER 90 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~--~~~~~~~~~L~~G~~VIID~t---n~~~ 90 (636)
.+.-+++.|+||+|||.+|-+++.++ |..+..+..-++.......+. .....+.+.+..-...|||.. +.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~ 183 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQ 183 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCH
Confidence 45568999999999999999987654 333444443222211111111 123444555777778999994 4566
Q ss_pred HHHHHHHHh
Q 006654 91 EQRTDFVKL 99 (636)
Q Consensus 91 ~~R~~l~~l 99 (636)
+.+..|..+
T Consensus 184 ~~~~~~~q~ 192 (254)
T COG1484 184 EEADLLFQL 192 (254)
T ss_pred HHHHHHHHH
Confidence 777777665
No 413
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.40 E-value=0.16 Score=53.88 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=56.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC------CeEEeehhhhcCCCCCcHHHH--HHHHHHHH--hCC------CeEEE
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR------PWARICQDTINKGKSGTKVQC--LTSASSAL--KKG------KSVFL 83 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~------~~~~Is~D~ir~~~~~~~~~~--~~~~~~~L--~~G------~~VII 83 (636)
-..+++-||||.|||+.|+.+++.+.. ++..+|..+.+ +...-+... +....-.. ..| +.+|+
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder-Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIl 135 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER-GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIIL 135 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc-cccchhhhhcCHHHHhhccccccCCCCCcceEEEE
Confidence 345789999999999999999988752 11222322221 110011111 11111111 011 45899
Q ss_pred eCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 84 DRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 84 D~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
|.+. ++.+.+..+.+. ..+....+++.+.-..+.+..=+..|-.
T Consensus 136 DEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 136 DECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred echhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 9874 666666666666 5544444555555455555554555543
No 414
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.40 E-value=0.049 Score=57.78 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=29.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ 55 (636)
...+.+|.++|+|||||||++..++..+ +..+..++.|.
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3467888999999999999999987654 33455566553
No 415
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.23 Score=52.30 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..|.-+++.||||+||||.|..+++.+.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 4566789999999999999999998875
No 416
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.37 E-value=0.042 Score=59.11 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCe
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPW 48 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~ 48 (636)
...|+++|+|||||||+++.|+..++.++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 34789999999999999999999988554
No 417
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.36 E-value=0.033 Score=54.24 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHc
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~ 44 (636)
|+|.|.||+||||+.+++++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 418
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.35 E-value=0.27 Score=52.31 Aligned_cols=112 Identities=18% Similarity=0.152 Sum_probs=62.9
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe-EEeehhhh--c--CCCCCcHHHHHHHHHHHH------hCCCeEEE
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI--N--KGKSGTKVQCLTSASSAL------KKGKSVFL 83 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~-~~Is~D~i--r--~~~~~~~~~~~~~~~~~L------~~G~~VII 83 (636)
..+..+..+++.|++|+||+|+|+.+++.+-+.. .....|.+ . ++.....+++...+ +.+ ...+-+||
T Consensus 21 ~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~-~~~~~~p~~~~~kv~iI 99 (313)
T PRK05564 21 IKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII-EEVNKKPYEGDKKVIII 99 (313)
T ss_pred HcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH-HHHhcCcccCCceEEEE
Confidence 3456678899999999999999999998753110 00011211 0 12212223322222 222 12245788
Q ss_pred eC-CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 84 DR-CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 84 D~-tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
|. -.++......+++. .+......+|.+.-..+.+..-+..|..
T Consensus 100 ~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 100 YNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred echhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 87 45677677777777 6554444444444445556566666665
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.35 E-value=0.2 Score=52.57 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=29.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
++..++++|++|+||||+++.++..+ +.....++.|..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 44689999999999999999988664 2234556766553
No 420
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.34 E-value=0.03 Score=64.08 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+..+++|+||||+||||||+.|++.+.
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3556899999999999999999998765
No 421
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.042 Score=58.31 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=39.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-CCCCcHHHHHHHHHHHHh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSGTKVQCLTSASSALK 76 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-~~~~~~~~~~~~~~~~L~ 76 (636)
..-|+|+||.|||||-+|+-|++.++.||..-|.-.+-+ +..|.. +...+.+.|.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED--VENillkLlq 152 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED--VENILLKLLQ 152 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh--HHHHHHHHHH
Confidence 356899999999999999999999998887777655543 333433 2244444444
No 422
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.33 E-value=0.04 Score=55.00 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
|..|.++|++||||||+.+.+...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56789999999999999999988754
No 423
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=94.32 E-value=0.027 Score=49.43 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccc
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSI 614 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~ 614 (636)
..++|.||+++++-|.+|.+.-|+||+||. -..+|.|+
T Consensus 6 ~~vv~e~~~~~~~~~~~p~~~gh~LVipk~-H~~~l~dl 43 (98)
T PF01230_consen 6 ARVVYEDDHFVAFLDIFPISPGHLLVIPKR-HVESLSDL 43 (98)
T ss_dssp CEEEEE-SSEEEEEESSTSSTTEEEEEESS-TGSSGGGS
T ss_pred eeEEEECCCEEEEEcCCCCCCeEEEEEecc-cccchhcC
Confidence 459999999999999999999999999998 55555554
No 424
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.31 E-value=0.043 Score=57.11 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=28.9
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehh
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQD 54 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D 54 (636)
...+|.+|+++|+.|||||||.++|...+. .+-..||.|
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 455788999999999999999999875543 222346654
No 425
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.28 E-value=0.038 Score=49.23 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHc
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~ 44 (636)
|+++|.+|||||||.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 426
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.28 Score=57.92 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=26.0
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....+..+++.||+|+||||+|+.+++.+.
T Consensus 36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 36 SNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 445577889999999999999999998875
No 427
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.25 E-value=0.039 Score=62.97 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=25.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~ 46 (636)
..+.+++|.|||||||||..+.|+++++.
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34569999999999999999999999983
No 428
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.37 Score=55.71 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=59.4
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCC-------e--EEee--------hhhhc-CCCC-CcHHHHHHHHHHH--
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-------W--ARIC--------QDTIN-KGKS-GTKVQCLTSASSA-- 74 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-------~--~~Is--------~D~ir-~~~~-~~~~~~~~~~~~~-- 74 (636)
....+..+++.|+||.||||+|+.+++.+... + +..+ .|.+. ++.. ...+.+.......
T Consensus 34 ~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~ 113 (563)
T PRK06647 34 SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMF 113 (563)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHh
Confidence 34457789999999999999999999987521 0 0000 11111 1111 1112222221111
Q ss_pred ---HhCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 75 ---LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 75 ---L~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
....+-+|||... ++......+++. .+....+.+|+......-+...+..|..
T Consensus 114 ~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~ 171 (563)
T PRK06647 114 PPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQ 171 (563)
T ss_pred chhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhce
Confidence 1233468888854 455555666666 5544444444444444455556666654
No 429
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.23 E-value=0.043 Score=54.80 Aligned_cols=29 Identities=28% Similarity=0.530 Sum_probs=25.3
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+.+.+|.++|++|||||||.+++++.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688899999999999999999998754
No 430
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.22 E-value=0.034 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.|+|+|+.|||||||+++|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4899999999999999999754
No 431
>PTZ00202 tuzin; Provisional
Probab=94.21 E-value=0.26 Score=55.06 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=27.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
.|.+++|+|++|+||||+++.+....+.....+|
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vN 318 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVD 318 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceEEEEC
Confidence 5679999999999999999999988774433344
No 432
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.18 E-value=0.28 Score=56.19 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=25.9
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...-+..+++.|+||+||||+|+.+++.+.
T Consensus 32 ~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 32 NNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred cCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 445677889999999999999999998863
No 433
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.14 E-value=0.046 Score=52.30 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=25.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.=++++|++|+||||+|..|.++ + +..++.|..
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~-g--~~lvaDD~v 47 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR-G--HRLVADDRV 47 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-C--CeEEECCEE
Confidence 34789999999999999999876 2 455665554
No 434
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.29 Score=57.23 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+.-+++.|+||+||||+|+.+++.+.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhc
Confidence 44578999999999999999999876
No 435
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.62 Score=50.26 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=70.1
Q ss_pred ccchhhhhhhccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEee--------hhhhc--CCC---C
Q 006654 4 DIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARIC--------QDTIN--KGK---S 61 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is--------~D~ir--~~~---~ 61 (636)
-|.+..|......+..+.-+++.|++|.||+|+|+.+++.+.+.. ++.+ .|.+. .+. .
T Consensus 6 PWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~ 85 (328)
T PRK05707 6 PWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKT 85 (328)
T ss_pred CCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCC
Confidence 345555555555566788899999999999999999998864210 0000 12211 111 1
Q ss_pred CcHHHHHHHHHHHHh-----C-CCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 62 GTKVQCLTSASSALK-----K-GKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 62 ~~~~~~~~~~~~~L~-----~-G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..-+++ +.+.+.+. . .+.+|||... ++......+++. .+......+|.+.-..+.+..-+..|-.
T Consensus 86 i~id~i-R~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~ 158 (328)
T PRK05707 86 IKVDQV-RELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ 158 (328)
T ss_pred CCHHHH-HHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhce
Confidence 112232 22333332 1 2357888754 677777788888 6655445555555455555555555554
No 436
>COG4240 Predicted kinase [General function prediction only]
Probab=94.14 E-value=0.11 Score=52.93 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=45.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhc-------------------CCCCCcHH-HHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN-------------------KGKSGTKV-QCLTSASS 73 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir-------------------~~~~~~~~-~~~~~~~~ 73 (636)
..|-++.++||-||||||++-.|...+ +-+...++.|++. .+..|+.+ .+...+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLn 127 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLN 127 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHH
Confidence 458999999999999999998865433 2234556777763 12334433 45677788
Q ss_pred HHhCCCe-EEEeC
Q 006654 74 ALKKGKS-VFLDR 85 (636)
Q Consensus 74 ~L~~G~~-VIID~ 85 (636)
++.+|.. |++-.
T Consensus 128 ai~~g~~~V~lPr 140 (300)
T COG4240 128 AIARGGPTVPLPR 140 (300)
T ss_pred HHhcCCCCccccc
Confidence 8877764 55543
No 437
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.11 E-value=0.049 Score=69.21 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~ 58 (636)
..|+=|+|+||||+|||.+|+++|.+.+.|+..|+...+..
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 34667899999999999999999999999998888766653
No 438
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.39 Score=55.75 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=60.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEee--------hhhhc-CCCC-CcHHHHHHHHHHHH-
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARIC--------QDTIN-KGKS-GTKVQCLTSASSAL- 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is--------~D~ir-~~~~-~~~~~~~~~~~~~L- 75 (636)
....+..+++.|++|+||||+|+.+++.+.+.- +..| .|.+. ++.. ..-++ ++.+.+.+
T Consensus 34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~-ir~l~~~~~ 112 (576)
T PRK14965 34 TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDD-IRELRENVK 112 (576)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHH-HHHHHHHHH
Confidence 344577889999999999999999998865210 0011 11111 1110 01111 12222222
Q ss_pred -----hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 76 -----~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+.+|||... ++......+++. .+....+.+|+.....+-+..-+..|..
T Consensus 113 ~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 113 YLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ 171 (576)
T ss_pred hccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhh
Confidence 223468999854 555555666666 5544444555555555556666666654
No 439
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.41 Score=46.18 Aligned_cols=26 Identities=38% Similarity=0.485 Sum_probs=22.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.++|++|||||||.+.++-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45688999999999999999998654
No 440
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.36 Score=56.16 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
-+..++|.|+||+||||+|+.|++.+.
T Consensus 37 i~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 37 VAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 356789999999999999999999875
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.09 E-value=0.057 Score=52.24 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=23.5
Q ss_pred EEEEccCCCcHHHHHHHHHHH---cCCCeEEeeh
Q 006654 23 VIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~ 53 (636)
+++.|+||+|||+++.+++.. .+.++..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 689999999999999998654 2444555554
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.05 E-value=0.087 Score=53.78 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..++++.|+||+||||+|.+++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999776653
No 443
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.04 E-value=0.32 Score=54.76 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=25.0
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..-+..+++.|+||+||||+|+.+++.+.
T Consensus 36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34567789999999999999999998864
No 444
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.1 Score=58.65 Aligned_cols=64 Identities=30% Similarity=0.480 Sum_probs=42.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee-h-hhhcCCCCCcHHHH---HHHHHHHHhCCCe-EEEeC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC-Q-DTINKGKSGTKVQC---LTSASSALKKGKS-VFLDR 85 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is-~-D~ir~~~~~~~~~~---~~~~~~~L~~G~~-VIID~ 85 (636)
.-.-++|.||||||||+||.+++.....||+.|. . |++. .. ....| .+....+.++.-+ +|+|.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG--~s-EsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIG--LS-ESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccC--cc-HHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 4456899999999999999999999887776654 3 3331 11 12222 2455555666555 56666
No 445
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.01 E-value=0.037 Score=50.87 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.++|++|||||||.+.|+...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34678999999999999999987654
No 446
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.98 E-value=0.054 Score=55.83 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR 46 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~ 46 (636)
..|-.++++|++||||||+...|...+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 45667899999999999999999877653
No 447
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.98 E-value=0.044 Score=49.02 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 006654 23 VIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~ 43 (636)
|+++|.||+|||||.+.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999853
No 448
>PRK00089 era GTPase Era; Reviewed
Probab=93.94 E-value=0.32 Score=51.03 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
+.-.|.++|.||||||||...|..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g 27 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVG 27 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999874
No 449
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.93 E-value=0.049 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...|+++|+|||||||+...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999998753
No 450
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.93 E-value=0.086 Score=58.91 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..-|++.|+||+||||+|++++..+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578899999999999999998764
No 451
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=93.93 E-value=0.27 Score=51.37 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=72.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHH----HHHHHHHHHH-hCCCeEEEeCCCCCH--
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV----QCLTSASSAL-KKGKSVFLDRCNLER-- 90 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~----~~~~~~~~~L-~~G~~VIID~tn~~~-- 90 (636)
..|.||++-|.-||||+...+.|.+.+..+..++..- . ..+.. ..+-..-+.| ..|.-.|.|+.-+..
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~--~---~Pt~eE~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl 128 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF--K---APSAEELDHDFLWRIHKALPERGEIGIFNRSHYEDVL 128 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC--C---CCCHHHHcCchHHHHHHhCCCCCeEEEEcCccccchh
Confidence 3589999999999999999999999887544433321 0 00111 1122333444 567777777743332
Q ss_pred -----------HHH------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 91 -----------EQR------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 91 -----------~~R------~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
..+ ..|.+. ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus 129 ~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~ 186 (264)
T TIGR03709 129 VVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPT 186 (264)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCc
Confidence 111 134444 6788988889999999999999999977543
No 452
>PF13479 AAA_24: AAA domain
Probab=93.92 E-value=0.1 Score=52.51 Aligned_cols=22 Identities=41% Similarity=0.809 Sum_probs=19.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHV 40 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~L 40 (636)
.+..++|.|+||+||||+|..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4567899999999999999988
No 453
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.88 E-value=0.059 Score=53.53 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=28.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
++..++.+.|+||||||++|.+++... +.....++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456899999999999999999987543 3345556654
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.87 E-value=0.42 Score=49.92 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=47.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCC---eEEee-hhhhc-CCCC------CcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP---WARIC-QDTIN-KGKS------GTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---~~~Is-~D~ir-~~~~------~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
...+++++|++||||||+.+.+......+ ...|. ..++. .+.. .........+..+|+.+-.+|+=+--
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence 34589999999999999999987765421 22221 11211 0100 00011335566677777777766656
Q ss_pred CCHHHHHHHHHh
Q 006654 88 LEREQRTDFVKL 99 (636)
Q Consensus 88 ~~~~~R~~l~~l 99 (636)
...+....+++.
T Consensus 159 R~~e~a~~~~~a 170 (264)
T cd01129 159 RDAETAEIAVQA 170 (264)
T ss_pred CCHHHHHHHHHH
Confidence 666665555555
No 455
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.048 Score=55.55 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=27.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
...+..++||.||||||+|..|+-.-. |.+...+.+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~ 65 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILF 65 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEE
Confidence 456889999999999999999986543 4444444443
No 456
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.86 E-value=0.041 Score=55.30 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..-++|.|+||+|||++|+.+...++
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 35689999999999999999998765
No 457
>PRK04328 hypothetical protein; Provisional
Probab=93.81 E-value=0.12 Score=53.39 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=38.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCCCcHHHHHHH-------HHHHHhCCCeEEEeCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTS-------ASSALKKGKSVFLDRC 86 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~~~~~~~~~~-------~~~~L~~G~~VIID~t 86 (636)
++..++++.|+||||||+||.+++.. .+.+...++.+. +..++.+. +.+.+..|.-.|+|..
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee-------~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~ 92 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE-------HPVQVRRNMRQFGWDVRKYEEEGKFAIVDAF 92 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC-------CHHHHHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence 35678999999999999999997754 233444555432 11111111 2344566777888874
No 458
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.80 E-value=0.4 Score=55.80 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.5
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.....+.-++|.|++|+||||+|+.+++.+.
T Consensus 41 ~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 41 ETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3445577889999999999999999999875
No 459
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.80 E-value=0.061 Score=53.86 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=28.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
++..++.+.|+|||||||||-+++... +.+...++.+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456789999999999999999998654 3345556654
No 460
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.78 E-value=0.058 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+|.++|+.+||||||++.|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998665
No 461
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.78 E-value=0.066 Score=57.47 Aligned_cols=31 Identities=32% Similarity=0.625 Sum_probs=27.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
-++|.|+||.|||++++.+++.++.++.+|.
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 4789999999999999999999997777765
No 462
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.77 E-value=0.29 Score=50.46 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=50.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhh----h----------------cCCCCCcH-HHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDT----I----------------NKGKSGTK-VQCLTSAS 72 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~----i----------------r~~~~~~~-~~~~~~~~ 72 (636)
.+..|++|.|.||+|||+|+-.++... +.++..++.++ + +.+..... ......+.
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~ 96 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAA 96 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHH
Confidence 345799999999999999999987643 33455566421 1 11111111 11223444
Q ss_pred HHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEe
Q 006654 73 SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD 112 (636)
Q Consensus 73 ~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld 112 (636)
..|.....+|.|...++...-...+.. +.....+.+|++|
T Consensus 97 ~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID 137 (259)
T PF03796_consen 97 EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID 137 (259)
T ss_dssp HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence 556665556666666676655544443 2221334455555
No 463
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.76 E-value=0.53 Score=48.64 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=26.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~ 53 (636)
...++++.|+||+|||||+.+++... +.....++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45689999999999999999886542 434555554
No 464
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.75 E-value=0.041 Score=55.22 Aligned_cols=21 Identities=38% Similarity=0.855 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 006654 23 VIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~ 43 (636)
|++.|+|||||||+.++++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999999987
No 465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.089 Score=60.57 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=35.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~ 58 (636)
..|+-++|+||||+|||.+|++.+-+.+.|+..++.-++-+
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 46888999999999999999999999998988888655533
No 466
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=93.69 E-value=0.74 Score=45.04 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=25.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+|-+.+..|||++|+|++|++++| +..+|.+.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg--~~~~d~~ii 33 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG--YPYYDREII 33 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT----EE-HHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC--CccCCHHHH
Confidence 577899999999999999999999 555776544
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.68 E-value=0.87 Score=48.54 Aligned_cols=125 Identities=15% Similarity=0.092 Sum_probs=61.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee-hhhhc--C-CC-------C--Cc-HHHHHHHHHHHHhCCCeEE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTIN--K-GK-------S--GT-KVQCLTSASSALKKGKSVF 82 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is-~D~ir--~-~~-------~--~~-~~~~~~~~~~~L~~G~~VI 82 (636)
....++++|++||||||+.+.|...++. ....|. ...+. . .+ . +. .....+.+...|+..-.+|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 3468999999999999999999877652 222232 11211 0 00 0 00 0112345555666655544
Q ss_pred EeCCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654 83 LDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l~~~g~~v~vV~L-d~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~ 145 (636)
+=+-....+....+..+. .|....+..+ ..+......|+........ .....+.+++.++.
T Consensus 223 i~gE~r~~e~~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~-~~~g~~~~~~~~~i 284 (308)
T TIGR02788 223 ILGELRGDEAFDFIRAVN-TGHPGSITTLHAGSPEEAFEQLALMVKSSQ-AGLGLDFAYIVKLV 284 (308)
T ss_pred EEeccCCHHHHHHHHHHh-cCCCeEEEEEeCCCHHHHHHHHHHHhhccc-cccCCCHHHHHHHH
Confidence 444455655443333332 2222112233 3445566778876643100 01245666664433
No 468
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.67 E-value=0.12 Score=62.23 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=39.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC----------CCeEEeehhhhcC--CCCCcHHHHHHHHHHHHhC-CCe-EEEeC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTINK--GKSGTKVQCLTSASSALKK-GKS-VFLDR 85 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~----------~~~~~Is~D~ir~--~~~~~~~~~~~~~~~~L~~-G~~-VIID~ 85 (636)
.-++|+|+||+|||++++.|+.... ..+..++...+.. ...+.+++.++.+.+.+.. +.. ++||.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDE 279 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDE 279 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3568999999999999999988752 2333455433332 2345555545444444433 333 56676
No 469
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.63 E-value=0.19 Score=54.88 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=23.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..+..+++.|+||+||||+++.+++.+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345668899999999999999998765
No 470
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.59 E-value=0.75 Score=49.72 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=58.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCC--eEEee-hhhhcC----C-------C--CCc-HHHHHHHHHHHHhCCCeE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC-QDTINK----G-------K--SGT-KVQCLTSASSALKKGKSV 81 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is-~D~ir~----~-------~--~~~-~~~~~~~~~~~L~~G~~V 81 (636)
....|+++|++||||||+.+.|....+.. ...|. ..++.- + . .+. .....+.+..+|+..-.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 35679999999999999999999877632 22221 112210 0 0 000 111335667777776666
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
|+=+.-+..+....+..+ ..+...+..+.-+ +.....+|+.....
T Consensus 239 IivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~-s~~~ai~Rl~~~~~ 284 (332)
T PRK13900 239 IIVGELRGAEAFSFLRAINTGHPGSISTLHAD-SPAMAIEQLKLMVM 284 (332)
T ss_pred EEEEecCCHHHHHHHHHHHcCCCcEEEEEecC-CHHHHHHHHHHHHH
Confidence 655556666544433333 3332123333322 33456678775543
No 471
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=93.56 E-value=0.07 Score=53.64 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=27.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHH---HcCCCeEEeehhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMR---SSARPWARICQDT 55 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak---~~~~~~~~Is~D~ 55 (636)
.-.+++||.||||||++..+.. ..||.+..++.|-
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP 41 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP 41 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence 4568899999999999999764 4566666677654
No 472
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.52 E-value=0.15 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=20.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHcC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
++|+||||+||||+|+.|+....
T Consensus 165 mIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcC
Confidence 68999999999999999997765
No 473
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.51 E-value=0.075 Score=50.54 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=25.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT 55 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ 55 (636)
+.++|++||||||++..++..+ +.++.+++.|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999988654 34456666663
No 474
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=93.49 E-value=0.64 Score=52.74 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=72.3
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCCCCH----
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER---- 90 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn~~~---- 90 (636)
...|.+|+|-|.-||||++..+.|...+......+..-.. .... .....+-..-..| ..|.-.|.|..-+..
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE--~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlve 114 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEE--RERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIE 114 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHH--hcCcHHHHHHHhCCCCCeEEEEcCcccchhhHH
Confidence 4578999999999999999999999987743322221000 0000 0001223333344 567777777744333
Q ss_pred ---------HHH------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 91 ---------EQR------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 91 ---------~~R------~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
..+ ..|.++ ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus 115 rv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~ 170 (493)
T TIGR03708 115 RLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPE 170 (493)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 111 134444 6788988889999999999999999988654
No 475
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=93.49 E-value=1.1 Score=44.85 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=34.6
Q ss_pred CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654 100 GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE 149 (636)
Q Consensus 100 ~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe 149 (636)
......+ -+|||.++.++|.+|+..|.+.... .+|-+.+..++...|
T Consensus 148 ~~~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~---gipL~YLe~LH~~HE 195 (244)
T KOG4235|consen 148 RSMDVSLDGIIYLRASPETCYKRIYLRAREEEK---GIPLKYLEALHELHE 195 (244)
T ss_pred hccccccceEEEeecChHHHHHHHHHHhhhhhc---CCcHHHHHHHHHHHH
Confidence 3333444 5899999999999999999986543 688777777665543
No 476
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.46 E-value=0.073 Score=51.40 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.++.++|++||||||++++|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 477
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.46 E-value=0.086 Score=63.13 Aligned_cols=38 Identities=24% Similarity=0.601 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+..+++|+||||+||||+++.+++.++.++..++....
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~ 385 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGV 385 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 34578999999999999999999999987877775443
No 478
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.41 E-value=0.059 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
++.++|++||||||++.+|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998764
No 479
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.41 E-value=0.34 Score=51.99 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=31.8
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
..+|.+|+++|..|+||||-..+|+..+ |........|.+|
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 4569999999999999999888888665 3344445568876
No 480
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.40 E-value=0.23 Score=55.79 Aligned_cols=104 Identities=11% Similarity=0.145 Sum_probs=55.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH---HHHHHHHHHHhCCCeEEEeCCCCC---HH
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV---QCLTSASSALKKGKSVFLDRCNLE---RE 91 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~---~~~~~~~~~L~~G~~VIID~tn~~---~~ 91 (636)
++|.|++|+|||+++++++..+ +..+..++.+.+......... .......+.++.-..+|||...+- ..
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~ 223 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEK 223 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHH
Confidence 7899999999999999987643 233445665544322111000 112334444555667899996432 23
Q ss_pred HHHHHHHh----CCCCCeEEEEEEeCCHHHH---HHHHHhccc
Q 006654 92 QRTDFVKL----GGPEVDVHAVVLDLPAKLC---ISRSVKRIE 127 (636)
Q Consensus 92 ~R~~l~~l----~~~g~~v~vV~Ld~p~e~l---~~R~~~R~~ 127 (636)
....+..+ ...+.. .++.-+.+.+.+ .+|+..|-.
T Consensus 224 ~~e~lf~l~N~~~~~~k~-iIltsd~~P~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 224 TNEIFFTIFNNFIENDKQ-LFFSSDKSPELLNGFDNRLITRFN 265 (450)
T ss_pred HHHHHHHHHHHHHHcCCc-EEEECCCCHHHHhhccHHHHHHHh
Confidence 33344333 233322 222324444433 467777754
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.40 E-value=0.67 Score=50.19 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=55.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCC---eEEeehhhh-----------cCCCCCc-HHHHHHHHHHHHhCCCeEEEe
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTI-----------NKGKSGT-KVQCLTSASSALKKGKSVFLD 84 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~---~~~Is~D~i-----------r~~~~~~-~~~~~~~~~~~L~~G~~VIID 84 (636)
..+++++|++||||||+.+.+......+ .+..-.|.+ .....+. .......+..+|+.+-.+|+=
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 4689999999999999999988765421 111111211 0101111 111234556667666555444
Q ss_pred CCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcc
Q 006654 85 RCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRI 126 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~ 126 (636)
+-....+.....+.....|..+. -.+. .+......|+..-.
T Consensus 202 gEird~~~~~~~l~aa~tGh~v~-~T~Ha~~~~~~~~Rl~~~~ 243 (343)
T TIGR01420 202 GEMRDLETVELALTAAETGHLVF-GTLHTNSAAQTIERIIDVF 243 (343)
T ss_pred eCCCCHHHHHHHHHHHHcCCcEE-EEEcCCCHHHHHHHHHHhc
Confidence 43556655554444423343332 2233 34455677877543
No 482
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.40 E-value=0.073 Score=57.54 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=25.9
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.....++++|.||+|+||||+++.|.+.+.
T Consensus 84 ~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 84 LEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445678899999999999999999988765
No 483
>COG3911 Predicted ATPase [General function prediction only]
Probab=93.39 E-value=0.071 Score=50.88 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=27.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.+++|.|.||+|||||.++|++.--..+...-+|.+.
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~ 46 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIA 46 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHH
Confidence 5789999999999999999987633223334456554
No 484
>PRK13764 ATPase; Provisional
Probab=93.39 E-value=0.36 Score=56.06 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....|+++|+|||||||+++.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356789999999999999999987765
No 485
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.37 E-value=0.16 Score=61.44 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++|+|+||+|||++++.|+...
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHh
Confidence 3357899999999999999999886
No 486
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.37 E-value=0.46 Score=54.91 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=25.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+..+++.|++|+||||+|+.+++.+.
T Consensus 35 ~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 35 GKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44577889999999999999999998865
No 487
>PRK09354 recA recombinase A; Provisional
Probab=93.35 E-value=0.29 Score=53.16 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=26.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~ 53 (636)
+...++.+.|+|||||||||-+++... +..+..|+.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 345789999999999999999987543 334555654
No 488
>PHA02624 large T antigen; Provisional
Probab=93.28 E-value=0.1 Score=60.12 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.6
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.-++...+++.||||||||||+..|++.++
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345677999999999999999999999994
No 489
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=93.27 E-value=0.43 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.|.++|.||+|||||..+|...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999854
No 490
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.26 E-value=0.1 Score=55.13 Aligned_cols=35 Identities=34% Similarity=0.487 Sum_probs=26.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEee
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARIC 52 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is 52 (636)
..-.+|.|+|+||||||||.+++...+. .....|.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~ 138 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE 138 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence 3467899999999999999999988753 2344554
No 491
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.14 Score=56.63 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
=.+|-||||+||||+..++|..++...+.++.
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence 47899999999999999999998844444544
No 492
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.23 E-value=0.069 Score=53.99 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
++..+..|+||+|||||||-|.+-+...
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 3457889999999999999999876543
No 493
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=0.084 Score=59.37 Aligned_cols=29 Identities=34% Similarity=0.545 Sum_probs=24.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.++|.++.++||||+|||||.+.|++++-
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 35677777999999999999999998864
No 494
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.18 E-value=0.073 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678999999999999999987543
No 495
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.18 E-value=0.81 Score=52.03 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.0
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+..+++.|+||+||||+|+.+++.+.
T Consensus 35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 35 QRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567788999999999999999999865
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.17 E-value=0.071 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998654
No 497
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.16 E-value=0.073 Score=53.22 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++...
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44678999999999999999998654
No 498
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=1.1 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+.-+++.||||+||||+|+.+++.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 467789999999999999999998764
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.12 E-value=0.092 Score=42.76 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak 42 (636)
.+.++.|+.||||||+-.++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998764
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.11 E-value=0.078 Score=52.73 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++...
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
Done!