Query 006654
Match_columns 636
No_of_seqs 454 out of 3300
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eti_A X (ADRP) domain, macro 100.0 3.9E-29 1.3E-33 240.0 7.6 118 343-485 10-134 (168)
2 3q71_A Poly [ADP-ribose] polym 99.9 4E-28 1.4E-32 242.4 12.8 128 338-486 34-168 (221)
3 3q6z_A Poly [ADP-ribose] polym 99.9 7.8E-28 2.7E-32 239.6 11.7 126 339-485 33-166 (214)
4 1spv_A Putative polyprotein/ph 99.9 3.9E-27 1.3E-31 229.9 14.3 121 343-485 3-131 (184)
5 1yd9_A Core histone macro-H2A. 99.9 5.1E-27 1.7E-31 230.7 13.8 121 341-485 17-145 (193)
6 2xd7_A Core histone macro-H2A. 99.9 5.3E-27 1.8E-31 230.6 13.7 122 340-485 16-148 (193)
7 2x47_A Macro domain-containing 99.9 9.9E-27 3.4E-31 234.9 12.2 121 343-485 62-187 (235)
8 4abl_A Poly [ADP-ribose] polym 99.9 7.3E-27 2.5E-31 227.4 10.5 119 334-485 13-136 (183)
9 3ejg_A Non-structural protein 99.9 1.4E-26 4.8E-31 226.2 8.0 116 342-485 37-159 (193)
10 2dx6_A Hypothetical protein TT 99.9 2.2E-25 7.5E-30 212.6 11.8 116 343-484 2-122 (159)
11 2acf_A Replicase polyprotein 1 99.9 6.4E-26 2.2E-30 220.5 7.0 117 342-484 19-142 (182)
12 3gpg_A NSP3, non-structural pr 99.9 8.7E-26 3E-30 216.6 7.3 114 343-486 10-128 (168)
13 3gqe_A Non-structural protein 99.9 1.3E-25 4.6E-30 215.4 8.4 115 342-486 3-122 (168)
14 3kh6_A Poly [ADP-ribose] polym 99.9 2.7E-25 9.2E-30 218.8 10.6 118 335-485 25-147 (199)
15 3ejf_A Non-structural protein 99.9 1.5E-25 5E-30 216.3 7.5 126 339-485 10-141 (176)
16 2vri_A Non-structural protein 99.9 2.4E-25 8.4E-30 215.2 7.9 119 343-485 17-138 (174)
17 1vhu_A Hypothetical protein AF 99.9 6E-25 2.1E-29 218.7 10.6 128 333-485 11-159 (211)
18 1njr_A 32.1 kDa protein in ADH 99.9 2.5E-23 8.6E-28 214.7 9.1 143 342-486 44-204 (284)
19 4gua_A Non-structural polyprot 99.9 7.7E-23 2.6E-27 221.7 8.4 111 343-483 344-459 (670)
20 2jyc_A Uncharacterized protein 99.7 3.5E-18 1.2E-22 162.9 10.0 113 341-483 18-136 (160)
21 2eee_A Uncharacterized protein 99.7 3.5E-18 1.2E-22 161.1 8.6 113 341-483 7-125 (149)
22 2fg1_A Conserved hypothetical 99.7 1.8E-17 6.3E-22 157.6 9.2 123 342-482 3-133 (158)
23 3zvl_A Bifunctional polynucleo 99.7 7E-17 2.4E-21 176.1 15.0 141 17-165 255-396 (416)
24 1ly1_A Polynucleotide kinase; 99.7 1.2E-16 4.3E-21 151.5 11.0 129 19-155 1-150 (181)
25 1ltq_A Polynucleotide kinase; 99.6 8.5E-15 2.9E-19 151.3 14.0 180 19-214 1-207 (301)
26 3umf_A Adenylate kinase; rossm 99.5 5.2E-14 1.8E-18 140.5 15.6 169 15-212 24-216 (217)
27 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 8.7E-14 3E-18 141.9 16.7 127 19-153 3-141 (260)
28 3sr0_A Adenylate kinase; phosp 99.5 4.1E-14 1.4E-18 140.1 13.3 172 22-209 2-204 (206)
29 3q71_A Poly [ADP-ribose] polym 99.5 1.2E-14 4.2E-19 145.1 2.7 131 168-312 52-185 (221)
30 3t61_A Gluconokinase; PSI-biol 99.4 1.8E-12 6.2E-17 126.2 16.6 125 18-152 16-152 (202)
31 1gvn_B Zeta; postsegregational 99.4 4.2E-12 1.4E-16 131.6 14.9 149 17-165 30-206 (287)
32 1knq_A Gluconate kinase; ALFA/ 99.4 2.6E-11 8.9E-16 115.0 19.2 122 19-151 7-144 (175)
33 2rhm_A Putative kinase; P-loop 99.4 2.7E-12 9.4E-17 123.0 12.1 108 18-127 3-127 (193)
34 1tev_A UMP-CMP kinase; ploop, 99.4 8.9E-12 3E-16 119.2 15.1 107 19-127 2-136 (196)
35 1qf9_A UMP/CMP kinase, protein 99.4 1.4E-11 4.9E-16 117.6 16.4 126 18-146 4-151 (194)
36 3tlx_A Adenylate kinase 2; str 99.3 5.5E-12 1.9E-16 127.3 13.6 111 17-129 26-160 (243)
37 1spv_A Putative polyprotein/ph 99.3 2.3E-13 7.7E-18 132.6 3.2 115 188-313 32-150 (184)
38 1qhx_A CPT, protein (chloramph 99.3 2.4E-11 8.2E-16 115.2 17.1 108 19-128 2-136 (178)
39 2p5t_B PEZT; postsegregational 99.3 4.7E-12 1.6E-16 128.4 12.7 113 16-128 28-160 (253)
40 2xd7_A Core histone macro-H2A. 99.3 3.7E-13 1.3E-17 132.0 3.9 113 187-312 50-166 (193)
41 3q6z_A Poly [ADP-ribose] polym 99.3 2.4E-13 8.1E-18 135.3 1.3 129 168-311 50-183 (214)
42 1yd9_A Core histone macro-H2A. 99.3 4.7E-13 1.6E-17 131.3 2.6 112 187-311 47-162 (193)
43 4abl_A Poly [ADP-ribose] polym 99.3 5.1E-13 1.7E-17 129.8 2.2 105 187-312 50-154 (183)
44 4eun_A Thermoresistant glucoki 99.3 6E-11 2.1E-15 115.5 16.9 126 16-152 25-166 (200)
45 2x47_A Macro domain-containing 99.3 4.8E-13 1.6E-17 135.0 1.3 115 188-313 91-206 (235)
46 1aky_A Adenylate kinase; ATP:A 99.3 2.6E-11 9E-16 119.6 13.4 108 19-128 3-135 (220)
47 3be4_A Adenylate kinase; malar 99.3 2E-11 6.9E-16 120.6 12.1 107 20-128 5-135 (217)
48 2c95_A Adenylate kinase 1; tra 99.3 5.1E-11 1.7E-15 114.4 14.1 105 18-127 7-135 (196)
49 3lw7_A Adenylate kinase relate 99.3 2.1E-11 7.1E-16 113.9 11.0 116 21-146 2-140 (179)
50 3dl0_A Adenylate kinase; phosp 99.3 1.8E-11 6.1E-16 120.2 11.0 106 22-129 2-131 (216)
51 2cdn_A Adenylate kinase; phosp 99.3 3.3E-11 1.1E-15 117.2 12.5 109 16-126 16-148 (201)
52 2vli_A Antibiotic resistance p 99.2 3.6E-11 1.2E-15 114.4 12.2 126 19-151 4-145 (183)
53 2bwj_A Adenylate kinase 5; pho 99.2 3.3E-11 1.1E-15 116.0 12.0 105 18-127 10-138 (199)
54 3fb4_A Adenylate kinase; psych 99.2 2.6E-11 8.8E-16 118.9 11.0 106 22-129 2-131 (216)
55 3gmt_A Adenylate kinase; ssgci 99.2 9E-11 3.1E-15 118.0 14.9 140 21-175 9-175 (230)
56 3cm0_A Adenylate kinase; ATP-b 99.2 5.5E-11 1.9E-15 113.5 12.3 104 19-126 3-127 (186)
57 3kb2_A SPBC2 prophage-derived 99.2 7.9E-11 2.7E-15 110.5 12.8 128 21-161 2-145 (173)
58 3kh6_A Poly [ADP-ribose] polym 99.2 4.2E-12 1.4E-16 124.9 3.3 104 188-312 62-165 (199)
59 1ukz_A Uridylate kinase; trans 99.2 1E-10 3.6E-15 113.5 13.2 106 17-127 12-143 (203)
60 2xb4_A Adenylate kinase; ATP-b 99.2 1.1E-10 3.9E-15 115.9 13.6 105 22-128 2-129 (223)
61 2axn_A 6-phosphofructo-2-kinas 99.2 8.1E-11 2.8E-15 131.7 13.5 129 17-145 32-188 (520)
62 3gpg_A NSP3, non-structural pr 99.2 6.5E-13 2.2E-17 127.2 -3.5 83 238-321 70-154 (168)
63 2dx6_A Hypothetical protein TT 99.1 6.6E-12 2.3E-16 119.3 -0.2 118 188-320 31-148 (159)
64 1e4v_A Adenylate kinase; trans 99.1 7E-10 2.4E-14 109.0 14.0 102 22-128 2-126 (214)
65 1vhu_A Hypothetical protein AF 99.1 1.2E-11 4.2E-16 122.8 1.3 110 187-309 49-174 (211)
66 3ejf_A Non-structural protein 99.1 2.3E-11 8E-16 117.2 3.0 105 188-322 51-164 (176)
67 1zak_A Adenylate kinase; ATP:A 99.1 4.9E-10 1.7E-14 110.6 12.5 106 18-128 3-132 (222)
68 3eti_A X (ADRP) domain, macro 99.1 1.7E-11 5.9E-16 117.4 1.2 112 187-322 42-157 (168)
69 1ak2_A Adenylate kinase isoenz 99.1 9.5E-10 3.3E-14 109.7 13.8 109 18-128 14-146 (233)
70 3vaa_A Shikimate kinase, SK; s 99.1 2.2E-10 7.6E-15 111.4 8.3 103 19-129 24-143 (199)
71 3gqe_A Non-structural protein 99.0 2E-11 6.9E-16 116.9 0.1 85 238-326 64-153 (168)
72 1zd8_A GTP:AMP phosphotransfer 99.0 1.4E-09 4.9E-14 107.8 13.4 106 18-128 5-131 (227)
73 2yvu_A Probable adenylyl-sulfa 99.0 2.2E-09 7.4E-14 102.9 13.5 107 18-124 11-132 (186)
74 1njr_A 32.1 kDa protein in ADH 99.0 1.2E-10 4.2E-15 120.1 4.3 121 187-312 86-221 (284)
75 3trf_A Shikimate kinase, SK; a 99.0 9.9E-10 3.4E-14 104.8 8.8 96 20-123 5-116 (185)
76 4gp7_A Metallophosphoesterase; 98.9 2.9E-09 9.9E-14 101.4 11.0 143 19-171 8-164 (171)
77 3sp4_A Aprataxin-like protein; 98.9 1.7E-10 5.7E-15 113.3 2.1 49 558-607 4-52 (204)
78 1m7g_A Adenylylsulfate kinase; 98.9 6.5E-09 2.2E-13 101.9 12.9 106 17-122 22-149 (211)
79 2acf_A Replicase polyprotein 1 98.9 9.7E-11 3.3E-15 113.7 -0.8 116 188-329 53-172 (182)
80 2iyv_A Shikimate kinase, SK; t 98.9 2.9E-09 9.8E-14 101.6 9.5 118 20-147 2-135 (184)
81 2ze6_A Isopentenyl transferase 98.9 3.4E-09 1.2E-13 107.6 10.5 126 21-154 2-166 (253)
82 2qor_A Guanylate kinase; phosp 98.9 4.3E-09 1.5E-13 102.7 10.0 105 18-127 10-149 (204)
83 3uie_A Adenylyl-sulfate kinase 98.9 2.1E-08 7.2E-13 97.4 14.6 104 17-122 22-140 (200)
84 2pbr_A DTMP kinase, thymidylat 98.9 7.8E-09 2.7E-13 98.7 11.2 120 22-150 2-161 (195)
85 1x6v_B Bifunctional 3'-phospho 98.9 1.2E-08 4.2E-13 116.0 14.3 106 19-124 51-171 (630)
86 3ejg_A Non-structural protein 98.8 3.9E-10 1.3E-14 110.1 0.6 109 187-322 70-182 (193)
87 2pt5_A Shikimate kinase, SK; a 98.8 3.8E-09 1.3E-13 99.0 7.3 98 22-127 2-115 (168)
88 4gua_A Non-structural polyprot 98.8 4.2E-10 1.4E-14 122.8 0.6 75 246-321 412-488 (670)
89 1bif_A 6-phosphofructo-2-kinas 98.8 1.7E-08 5.7E-13 111.4 13.3 110 17-126 36-173 (469)
90 2bdt_A BH3686; alpha-beta prot 98.8 5.7E-08 2E-12 93.0 15.4 107 20-128 2-125 (189)
91 2pez_A Bifunctional 3'-phospho 98.8 4.4E-08 1.5E-12 93.2 13.5 107 19-125 4-125 (179)
92 2wwf_A Thymidilate kinase, put 98.8 7.5E-09 2.6E-13 100.6 6.9 126 18-151 8-171 (212)
93 4eaq_A DTMP kinase, thymidylat 98.8 5.5E-08 1.9E-12 97.3 13.1 134 16-150 22-193 (229)
94 1kag_A SKI, shikimate kinase I 98.8 5.4E-09 1.8E-13 98.4 5.4 121 19-147 3-139 (173)
95 1e6c_A Shikimate kinase; phosp 98.8 2.3E-08 7.8E-13 93.9 9.6 97 20-125 2-116 (173)
96 2z0h_A DTMP kinase, thymidylat 98.7 2.1E-08 7E-13 96.2 8.7 119 22-149 2-159 (197)
97 1nn5_A Similar to deoxythymidy 98.7 5.8E-08 2E-12 94.3 11.2 108 18-125 7-150 (215)
98 1uj2_A Uridine-cytidine kinase 98.7 1.2E-07 4E-12 95.7 13.8 103 15-126 17-172 (252)
99 1y63_A LMAJ004144AAA protein; 98.7 1.1E-07 3.9E-12 91.1 12.5 97 19-126 9-122 (184)
100 3tr0_A Guanylate kinase, GMP k 98.7 1.9E-07 6.4E-12 90.1 13.8 101 19-127 6-141 (205)
101 1m8p_A Sulfate adenylyltransfe 98.7 7.9E-08 2.7E-12 108.7 12.7 106 16-122 392-513 (573)
102 1via_A Shikimate kinase; struc 98.7 1.4E-08 4.9E-13 96.2 4.9 95 22-126 6-114 (175)
103 3iij_A Coilin-interacting nucl 98.6 6.3E-08 2.1E-12 92.0 9.2 97 19-127 10-119 (180)
104 1ex7_A Guanylate kinase; subst 98.6 3.1E-07 1.1E-11 89.3 14.2 131 22-165 3-170 (186)
105 1nks_A Adenylate kinase; therm 98.6 1.5E-07 5.1E-12 89.4 11.0 102 21-126 2-140 (194)
106 2plr_A DTMP kinase, probable t 98.6 1.5E-07 5E-12 91.0 11.0 107 20-126 4-144 (213)
107 3tau_A Guanylate kinase, GMP k 98.6 8E-08 2.7E-12 94.2 9.0 133 18-164 6-173 (208)
108 2gks_A Bifunctional SAT/APS ki 98.6 1.4E-07 4.6E-12 106.2 11.0 104 18-123 370-488 (546)
109 2f6r_A COA synthase, bifunctio 98.6 3.3E-07 1.1E-11 94.4 12.7 112 18-147 73-235 (281)
110 2bbw_A Adenylate kinase 4, AK4 98.5 5E-07 1.7E-11 90.5 13.0 105 19-128 26-151 (246)
111 2if2_A Dephospho-COA kinase; a 98.5 1.1E-07 3.7E-12 92.1 7.5 33 21-56 2-34 (204)
112 1jjv_A Dephospho-COA kinase; P 98.5 5.7E-08 1.9E-12 94.4 5.2 34 20-56 2-35 (206)
113 1zuh_A Shikimate kinase; alpha 98.5 1.5E-07 5.1E-12 88.4 7.5 94 20-125 7-117 (168)
114 3a00_A Guanylate kinase, GMP k 98.5 2.7E-07 9.4E-12 88.6 9.5 133 20-164 1-169 (186)
115 1uf9_A TT1252 protein; P-loop, 98.5 7.7E-08 2.6E-12 92.6 5.6 37 17-56 5-41 (203)
116 2vri_A Non-structural protein 98.5 8.2E-09 2.8E-13 99.5 -1.3 108 188-321 50-160 (174)
117 2qt1_A Nicotinamide riboside k 98.5 3.6E-07 1.2E-11 88.9 10.3 101 17-126 18-151 (207)
118 3nwj_A ATSK2; P loop, shikimat 98.5 2.9E-07 1E-11 93.5 8.9 97 20-125 48-162 (250)
119 1zp6_A Hypothetical protein AT 98.5 1.7E-06 5.7E-11 82.5 13.5 124 18-150 7-146 (191)
120 4edh_A DTMP kinase, thymidylat 98.5 1.6E-06 5.5E-11 85.8 13.7 109 19-127 5-154 (213)
121 2v54_A DTMP kinase, thymidylat 98.4 9.9E-07 3.4E-11 84.9 11.5 102 19-120 3-137 (204)
122 1kht_A Adenylate kinase; phosp 98.4 2.2E-07 7.5E-12 88.3 6.4 104 20-127 3-140 (192)
123 2jaq_A Deoxyguanosine kinase; 98.4 6.3E-07 2.2E-11 86.0 9.5 102 22-126 2-146 (205)
124 3ake_A Cytidylate kinase; CMP 98.4 1.7E-06 5.8E-11 83.4 11.8 34 22-57 4-37 (208)
125 4hlc_A DTMP kinase, thymidylat 98.4 2.8E-06 9.6E-11 83.6 13.4 110 19-128 1-148 (205)
126 1cke_A CK, MSSA, protein (cyti 98.4 1.7E-06 5.7E-11 84.8 11.7 36 20-57 5-40 (227)
127 2j41_A Guanylate kinase; GMP, 98.3 2.6E-06 8.8E-11 82.0 11.8 103 19-127 5-141 (207)
128 1vht_A Dephospho-COA kinase; s 98.3 1.8E-06 6.2E-11 84.5 10.3 35 19-56 3-37 (218)
129 3v9p_A DTMP kinase, thymidylat 98.3 1.1E-06 3.7E-11 88.1 8.5 128 19-148 24-193 (227)
130 3lv8_A DTMP kinase, thymidylat 98.3 2.6E-06 8.8E-11 85.8 10.4 109 19-127 26-177 (236)
131 4i1u_A Dephospho-COA kinase; s 98.3 4.9E-06 1.7E-10 82.4 11.8 111 20-148 9-168 (210)
132 4tmk_A Protein (thymidylate ki 98.3 8.6E-06 3E-10 80.6 13.4 108 20-127 3-155 (213)
133 2grj_A Dephospho-COA kinase; T 98.2 8.5E-07 2.9E-11 86.5 5.5 36 19-56 11-46 (192)
134 2h92_A Cytidylate kinase; ross 98.2 1.9E-05 6.5E-10 77.0 14.7 35 20-56 3-37 (219)
135 1rz3_A Hypothetical protein rb 98.2 1.7E-06 6E-11 84.0 7.1 102 17-126 19-165 (201)
136 4e22_A Cytidylate kinase; P-lo 98.2 1.7E-05 5.7E-10 80.1 14.5 36 20-57 27-62 (252)
137 3cr8_A Sulfate adenylyltranfer 98.2 3.3E-06 1.1E-10 95.1 10.0 105 18-123 367-487 (552)
138 1s96_A Guanylate kinase, GMP k 98.2 3.1E-05 1.1E-09 76.9 15.7 134 18-164 14-182 (219)
139 3fdi_A Uncharacterized protein 98.2 5.5E-06 1.9E-10 81.1 9.8 98 20-127 6-139 (201)
140 3a8t_A Adenylate isopentenyltr 98.1 1.3E-05 4.6E-10 84.6 12.8 107 19-127 39-196 (339)
141 1q3t_A Cytidylate kinase; nucl 98.1 3.7E-05 1.3E-09 76.4 15.3 38 18-57 14-51 (236)
142 3lnc_A Guanylate kinase, GMP k 98.1 3E-06 1E-10 83.9 6.7 26 19-44 26-52 (231)
143 3hjn_A DTMP kinase, thymidylat 98.1 2.2E-05 7.6E-10 76.5 12.9 106 22-127 2-144 (197)
144 1kgd_A CASK, peripheral plasma 98.1 1.7E-06 6E-11 82.5 4.7 27 19-45 4-30 (180)
145 1gtv_A TMK, thymidylate kinase 98.1 1.4E-07 4.9E-12 91.6 -3.5 106 22-127 2-155 (214)
146 2jyc_A Uncharacterized protein 98.0 1.5E-06 5.1E-11 82.5 1.5 51 256-306 100-150 (160)
147 1p5z_B DCK, deoxycytidine kina 98.0 3.3E-06 1.1E-10 85.5 4.0 44 7-51 10-54 (263)
148 3c8u_A Fructokinase; YP_612366 98.0 2E-05 6.8E-10 76.8 9.4 120 17-145 19-184 (208)
149 3r20_A Cytidylate kinase; stru 98.0 4.1E-05 1.4E-09 76.9 11.8 36 19-56 8-43 (233)
150 1lvg_A Guanylate kinase, GMP k 98.0 9.9E-05 3.4E-09 71.6 14.0 133 19-167 3-175 (198)
151 3crm_A TRNA delta(2)-isopenten 98.0 5.3E-05 1.8E-09 79.7 12.8 36 19-56 4-39 (323)
152 3ld9_A DTMP kinase, thymidylat 97.9 4.2E-05 1.5E-09 76.3 11.1 110 16-127 17-167 (223)
153 2eee_A Uncharacterized protein 97.9 2.3E-06 7.8E-11 80.2 1.3 65 239-305 73-138 (149)
154 3hdt_A Putative kinase; struct 97.9 4.5E-05 1.5E-09 76.0 10.1 35 20-56 14-48 (223)
155 3tmk_A Thymidylate kinase; pho 97.9 2E-05 6.8E-10 78.3 7.2 107 19-125 4-147 (216)
156 3tqc_A Pantothenate kinase; bi 97.8 5.1E-05 1.8E-09 79.7 9.4 108 17-127 89-249 (321)
157 3ney_A 55 kDa erythrocyte memb 97.7 0.00017 5.9E-09 70.5 11.4 27 19-45 18-44 (197)
158 3exa_A TRNA delta(2)-isopenten 97.6 0.0006 2.1E-08 71.3 14.0 36 19-56 2-37 (322)
159 3asz_A Uridine kinase; cytidin 97.6 0.00041 1.4E-08 67.0 11.9 40 18-57 4-43 (211)
160 1a7j_A Phosphoribulokinase; tr 97.6 0.00016 5.3E-09 74.8 8.8 40 19-58 4-46 (290)
161 3t15_A Ribulose bisphosphate c 97.5 0.00015 5E-09 74.8 8.4 70 17-86 33-108 (293)
162 3foz_A TRNA delta(2)-isopenten 97.5 0.0012 4.1E-08 69.0 15.2 38 17-56 7-44 (316)
163 2ocp_A DGK, deoxyguanosine kin 97.5 5.5E-05 1.9E-09 75.3 4.3 27 19-45 1-27 (241)
164 2jeo_A Uridine-cytidine kinase 97.5 0.00075 2.6E-08 67.3 12.6 39 19-57 24-70 (245)
165 4b4t_L 26S protease subunit RP 97.4 0.0002 6.9E-09 78.2 7.9 54 18-71 213-266 (437)
166 4b4t_M 26S protease regulatory 97.4 0.00017 5.9E-09 78.7 7.3 54 18-71 213-266 (434)
167 4b4t_J 26S protease regulatory 97.4 0.00019 6.6E-09 77.5 7.4 54 18-71 180-233 (405)
168 1z6g_A Guanylate kinase; struc 97.4 0.002 6.7E-08 63.3 14.1 139 19-171 22-199 (218)
169 1sq5_A Pantothenate kinase; P- 97.4 0.00091 3.1E-08 69.4 12.2 39 18-56 78-121 (308)
170 4b4t_K 26S protease regulatory 97.4 0.00023 8E-09 77.5 7.9 52 18-69 204-255 (428)
171 3h4m_A Proteasome-activating n 97.4 0.00039 1.3E-08 70.4 8.5 68 19-86 50-119 (285)
172 4b4t_H 26S protease regulatory 97.3 0.00026 8.9E-09 77.6 7.4 54 18-71 241-294 (467)
173 4b4t_I 26S protease regulatory 97.3 0.00031 1.1E-08 76.4 7.8 56 18-73 214-269 (437)
174 3b9p_A CG5977-PA, isoform A; A 97.3 0.00039 1.3E-08 70.8 8.1 68 19-86 53-122 (297)
175 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00051 1.8E-08 68.3 8.4 69 19-87 38-108 (262)
176 3eph_A TRNA isopentenyltransfe 97.3 0.0023 7.9E-08 69.1 13.9 34 20-55 2-35 (409)
177 2fg1_A Conserved hypothetical 97.3 4.4E-05 1.5E-09 72.1 0.1 49 256-305 99-147 (158)
178 1lv7_A FTSH; alpha/beta domain 97.2 0.00058 2E-08 68.2 7.7 43 20-62 45-87 (257)
179 2vp4_A Deoxynucleoside kinase; 97.2 0.00027 9.2E-09 70.0 5.1 26 18-43 18-43 (230)
180 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00047 1.6E-08 72.0 7.0 68 19-86 44-114 (322)
181 3eie_A Vacuolar protein sortin 97.1 0.00063 2.2E-08 70.7 7.5 69 19-87 50-120 (322)
182 3syl_A Protein CBBX; photosynt 97.1 0.0019 6.4E-08 66.0 10.2 68 19-87 66-140 (309)
183 3d3q_A TRNA delta(2)-isopenten 97.1 0.00037 1.3E-08 73.7 4.9 36 19-56 6-41 (340)
184 3d8b_A Fidgetin-like protein 1 97.1 0.00099 3.4E-08 70.4 8.2 69 18-86 115-185 (357)
185 2qp9_X Vacuolar protein sortin 97.0 0.00076 2.6E-08 71.4 7.0 68 20-87 84-153 (355)
186 3aez_A Pantothenate kinase; tr 97.0 0.0012 4.2E-08 68.9 8.2 40 17-56 87-131 (312)
187 1d2n_A N-ethylmaleimide-sensit 96.9 0.0041 1.4E-07 62.6 11.2 37 17-53 61-97 (272)
188 3ec2_A DNA replication protein 96.9 0.00068 2.3E-08 64.0 5.0 81 19-99 37-125 (180)
189 1p6x_A Thymidine kinase; P-loo 96.9 0.0017 5.8E-08 68.5 8.4 27 19-45 6-32 (334)
190 1jbk_A CLPB protein; beta barr 96.9 0.0015 5.1E-08 60.5 6.9 26 19-44 42-67 (195)
191 2x8a_A Nuclear valosin-contain 96.7 0.0018 6.2E-08 66.1 6.8 40 23-62 47-86 (274)
192 3cf2_A TER ATPase, transitiona 96.7 0.0017 5.7E-08 76.0 7.2 68 18-85 236-305 (806)
193 1ixz_A ATP-dependent metallopr 96.7 0.0027 9.2E-08 63.2 7.8 36 23-58 52-87 (254)
194 1g8f_A Sulfate adenylyltransfe 96.7 0.0014 4.9E-08 72.9 6.1 62 19-88 394-460 (511)
195 2p65_A Hypothetical protein PF 96.7 0.0015 5.1E-08 60.6 5.3 26 19-44 42-67 (187)
196 3cf0_A Transitional endoplasmi 96.7 0.00077 2.6E-08 69.5 3.6 39 18-56 47-85 (301)
197 3vfd_A Spastin; ATPase, microt 96.7 0.0018 6.2E-08 69.1 6.3 69 19-87 147-217 (389)
198 2ce7_A Cell division protein F 96.6 0.0036 1.2E-07 69.1 8.3 67 20-86 49-117 (476)
199 1znw_A Guanylate kinase, GMP k 96.6 0.0067 2.3E-07 58.7 9.3 27 19-45 19-45 (207)
200 2c9o_A RUVB-like 1; hexameric 96.6 0.0024 8.1E-08 69.8 6.6 54 19-72 62-117 (456)
201 3dm5_A SRP54, signal recogniti 96.6 0.0098 3.4E-07 65.0 11.3 40 18-57 98-140 (443)
202 3n70_A Transport activator; si 96.5 0.013 4.3E-07 53.5 10.3 90 21-118 25-120 (145)
203 1iy2_A ATP-dependent metallopr 96.5 0.0047 1.6E-07 62.5 7.9 35 23-57 76-110 (278)
204 3hu3_A Transitional endoplasmi 96.5 0.0041 1.4E-07 68.8 8.0 69 18-86 236-306 (489)
205 2chg_A Replication factor C sm 96.5 0.0032 1.1E-07 59.7 6.0 22 23-44 41-62 (226)
206 2kjq_A DNAA-related protein; s 96.5 0.0045 1.5E-07 57.3 6.8 56 19-87 35-93 (149)
207 3pfi_A Holliday junction ATP-d 96.4 0.005 1.7E-07 63.8 7.4 75 19-99 54-129 (338)
208 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0043 1.5E-07 65.1 6.5 68 20-87 123-192 (331)
209 3hws_A ATP-dependent CLP prote 96.3 0.0029 1E-07 66.7 5.1 39 19-57 50-88 (363)
210 2zan_A Vacuolar protein sortin 96.3 0.002 6.8E-08 70.3 3.9 42 19-60 166-208 (444)
211 1hqc_A RUVB; extended AAA-ATPa 96.3 0.004 1.4E-07 63.8 6.0 76 19-99 37-113 (324)
212 3kl4_A SRP54, signal recogniti 96.3 0.014 4.7E-07 63.7 10.4 40 18-57 95-137 (433)
213 3bos_A Putative DNA replicatio 96.3 0.0032 1.1E-07 61.0 4.8 38 19-56 51-91 (242)
214 3u61_B DNA polymerase accessor 96.3 0.0029 9.9E-08 65.2 4.7 78 16-99 44-129 (324)
215 2v1u_A Cell division control p 96.3 0.011 3.6E-07 61.7 9.1 27 18-44 42-68 (387)
216 1odf_A YGR205W, hypothetical 3 96.2 0.0031 1.1E-07 65.0 4.8 41 17-57 28-74 (290)
217 1kjw_A Postsynaptic density pr 96.2 0.018 6.1E-07 59.5 10.5 25 18-45 103-127 (295)
218 3cf2_A TER ATPase, transitiona 96.2 0.0037 1.3E-07 73.1 5.8 58 19-76 510-567 (806)
219 1l8q_A Chromosomal replication 96.2 0.0046 1.6E-07 63.9 5.7 68 20-87 37-108 (324)
220 1um8_A ATP-dependent CLP prote 96.2 0.0074 2.5E-07 63.8 7.5 37 20-56 72-108 (376)
221 1g41_A Heat shock protein HSLU 96.1 0.0062 2.1E-07 66.6 6.8 44 19-62 49-93 (444)
222 3czq_A Putative polyphosphate 96.1 0.012 4.2E-07 61.1 8.6 105 18-129 84-215 (304)
223 3tvt_A Disks large 1 tumor sup 96.1 0.022 7.5E-07 58.9 10.4 130 17-166 97-263 (292)
224 1of1_A Thymidine kinase; trans 96.1 0.041 1.4E-06 58.8 12.7 29 17-45 46-74 (376)
225 2qby_B CDC6 homolog 3, cell di 96.1 0.013 4.3E-07 61.4 8.6 27 18-44 43-69 (384)
226 1njg_A DNA polymerase III subu 96.1 0.013 4.3E-07 56.1 7.9 27 19-45 44-70 (250)
227 1ofh_A ATP-dependent HSL prote 96.0 0.0049 1.7E-07 62.5 5.0 40 19-58 49-88 (310)
228 3kfv_A Tight junction protein 96.0 0.023 7.9E-07 59.1 10.1 95 17-126 142-240 (308)
229 1in4_A RUVB, holliday junction 96.0 0.013 4.5E-07 61.1 8.1 63 19-87 50-112 (334)
230 2px0_A Flagellar biosynthesis 95.9 0.0086 2.9E-07 61.9 6.3 40 18-57 103-146 (296)
231 2j37_W Signal recognition part 95.9 0.034 1.2E-06 61.8 11.4 40 18-57 99-141 (504)
232 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0097 3.3E-07 66.0 7.0 41 22-62 66-106 (499)
233 3uk6_A RUVB-like 2; hexameric 95.9 0.045 1.5E-06 57.0 11.8 33 20-52 70-104 (368)
234 1ypw_A Transitional endoplasmi 95.9 0.0074 2.5E-07 70.8 6.1 69 18-86 236-306 (806)
235 1e2k_A Thymidine kinase; trans 95.8 0.067 2.3E-06 56.2 12.8 27 19-45 3-29 (331)
236 1c9k_A COBU, adenosylcobinamid 95.8 0.0042 1.4E-07 59.8 3.0 33 22-55 1-33 (180)
237 3sig_A PArg, poly(ADP-ribose) 95.8 0.0026 8.9E-08 65.2 1.5 50 257-306 193-242 (277)
238 3co5_A Putative two-component 95.7 0.005 1.7E-07 56.1 3.3 69 22-99 29-98 (143)
239 3tsz_A Tight junction protein 95.7 0.018 6.2E-07 61.9 8.1 99 17-126 229-331 (391)
240 1sxj_E Activator 1 40 kDa subu 95.7 0.01 3.4E-07 61.7 5.9 26 18-44 35-60 (354)
241 2qby_A CDC6 homolog 1, cell di 95.7 0.024 8E-07 58.9 8.7 35 18-52 43-83 (386)
242 2v3c_C SRP54, signal recogniti 95.7 0.016 5.5E-07 63.1 7.4 40 18-57 97-139 (432)
243 1fnn_A CDC6P, cell division co 95.6 0.033 1.1E-06 58.1 9.5 78 22-99 46-148 (389)
244 2r62_A Cell division protease 95.6 0.0033 1.1E-07 62.9 1.7 37 21-57 45-81 (268)
245 1vma_A Cell division protein F 95.6 0.01 3.6E-07 61.6 5.4 40 18-57 102-144 (306)
246 1sxj_C Activator 1 40 kDa subu 95.6 0.011 3.8E-07 61.6 5.4 25 19-44 46-70 (340)
247 2z4s_A Chromosomal replication 95.5 0.008 2.7E-07 65.5 4.4 67 20-86 130-203 (440)
248 2w58_A DNAI, primosome compone 95.5 0.012 4.1E-07 56.2 5.0 62 21-86 55-124 (202)
249 2cvh_A DNA repair and recombin 95.5 0.0094 3.2E-07 57.2 4.2 36 18-53 18-53 (220)
250 2chq_A Replication factor C sm 95.5 0.0095 3.3E-07 60.5 4.5 105 19-126 38-153 (319)
251 3pvs_A Replication-associated 95.5 0.024 8.3E-07 61.9 7.9 76 21-99 51-129 (447)
252 1jr3_A DNA polymerase III subu 95.4 0.029 9.9E-07 58.4 8.2 29 17-45 35-63 (373)
253 1j8m_F SRP54, signal recogniti 95.3 0.038 1.3E-06 57.0 8.4 38 20-57 98-138 (297)
254 2xxa_A Signal recognition part 95.3 0.13 4.6E-06 55.8 13.0 40 18-57 98-141 (433)
255 1ye8_A Protein THEP1, hypothet 95.3 0.0095 3.2E-07 56.8 3.4 24 22-45 2-25 (178)
256 1sxj_B Activator 1 37 kDa subu 95.3 0.012 4E-07 59.9 4.3 102 19-126 42-158 (323)
257 2qmh_A HPR kinase/phosphorylas 95.2 0.011 3.9E-07 57.8 3.8 34 20-56 34-67 (205)
258 2ehv_A Hypothetical protein PH 95.1 0.0098 3.3E-07 58.3 3.0 24 18-41 28-51 (251)
259 4a74_A DNA repair and recombin 95.1 0.011 3.8E-07 57.1 3.4 26 19-44 24-49 (231)
260 3m6a_A ATP-dependent protease 95.1 0.016 5.5E-07 64.8 5.1 36 19-54 107-142 (543)
261 2r44_A Uncharacterized protein 95.0 0.013 4.4E-07 60.6 4.0 31 22-52 48-78 (331)
262 1iqp_A RFCS; clamp loader, ext 95.0 0.01 3.4E-07 60.5 3.0 22 23-44 49-70 (327)
263 3bl9_A Scavenger mRNA-decappin 95.0 0.014 4.7E-07 60.3 3.9 53 564-617 140-200 (301)
264 3shw_A Tight junction protein 94.9 0.038 1.3E-06 60.7 7.4 152 17-186 221-381 (468)
265 1vlr_A MRNA decapping enzyme; 94.9 0.016 5.4E-07 60.8 4.1 53 564-617 187-247 (350)
266 1sxj_D Activator 1 41 kDa subu 94.9 0.045 1.6E-06 56.4 7.7 22 23-44 61-82 (353)
267 3hr8_A Protein RECA; alpha and 94.9 0.061 2.1E-06 57.1 8.7 36 19-54 60-98 (356)
268 4fcw_A Chaperone protein CLPB; 94.9 0.02 6.7E-07 58.2 4.8 36 21-56 48-86 (311)
269 1osn_A Thymidine kinase, VZV-T 94.9 0.046 1.6E-06 57.7 7.6 28 18-45 10-38 (341)
270 1sxj_A Activator 1 95 kDa subu 94.8 0.017 5.9E-07 64.0 4.4 35 19-53 76-110 (516)
271 2w0m_A SSO2452; RECA, SSPF, un 94.8 0.014 4.8E-07 56.2 3.3 25 19-43 22-46 (235)
272 1tue_A Replication protein E1; 94.8 0.013 4.3E-07 57.8 2.9 27 19-45 57-83 (212)
273 1xjc_A MOBB protein homolog; s 94.8 0.016 5.3E-07 55.2 3.4 25 20-44 4-28 (169)
274 2yhs_A FTSY, cell division pro 94.8 0.063 2.2E-06 59.4 8.8 27 18-44 291-317 (503)
275 1a5t_A Delta prime, HOLB; zinc 94.7 0.062 2.1E-06 56.0 8.0 111 16-127 20-160 (334)
276 3e70_C DPA, signal recognition 94.6 0.02 7E-07 60.0 4.1 40 18-57 127-169 (328)
277 2xkx_A Disks large homolog 4; 94.6 0.51 1.7E-05 54.5 16.2 98 18-126 529-662 (721)
278 3n1s_A HIT-like protein HINT; 94.6 0.022 7.6E-07 50.7 3.7 31 576-606 17-47 (119)
279 1np6_A Molybdopterin-guanine d 94.6 0.02 6.8E-07 54.6 3.6 26 19-44 5-30 (174)
280 1svm_A Large T antigen; AAA+ f 94.6 0.019 6.6E-07 61.4 3.8 28 18-45 167-194 (377)
281 4a1f_A DNAB helicase, replicat 94.6 0.11 3.8E-06 54.7 9.6 35 19-53 45-82 (338)
282 3rhf_A Putative polyphosphate 94.5 0.073 2.5E-06 54.7 7.8 107 18-130 73-205 (289)
283 3b9q_A Chloroplast SRP recepto 94.5 0.023 7.8E-07 58.9 4.1 27 18-44 98-124 (302)
284 1qvr_A CLPB protein; coiled co 94.5 0.046 1.6E-06 64.4 7.2 67 21-87 192-273 (854)
285 4egu_A Histidine triad (HIT) p 94.5 0.024 8.1E-07 50.3 3.7 31 576-606 18-48 (119)
286 1htw_A HI0065; nucleotide-bind 94.5 0.027 9.1E-07 52.8 4.2 28 18-45 31-58 (158)
287 1rj9_A FTSY, signal recognitio 94.4 0.021 7.2E-07 59.2 3.7 26 19-44 101-126 (304)
288 2ga8_A Hypothetical 39.9 kDa p 94.4 0.02 6.8E-07 60.8 3.6 27 19-45 23-49 (359)
289 1n0w_A DNA repair protein RAD5 94.4 0.018 6E-07 56.2 2.9 25 19-43 23-47 (243)
290 2r2a_A Uncharacterized protein 94.4 0.029 1E-06 54.6 4.4 26 18-43 3-28 (199)
291 3o1c_A Histidine triad nucleot 94.4 0.025 8.7E-07 50.8 3.7 31 576-606 29-59 (126)
292 2ffh_A Protein (FFH); SRP54, s 94.4 0.18 6.3E-06 54.7 11.0 39 19-57 97-138 (425)
293 2gza_A Type IV secretion syste 94.3 0.18 6.1E-06 53.3 10.7 125 20-146 175-319 (361)
294 1ypw_A Transitional endoplasmi 94.3 0.0082 2.8E-07 70.4 0.3 45 19-63 510-554 (806)
295 3pxg_A Negative regulator of g 94.3 0.029 9.7E-07 61.5 4.6 24 21-44 202-225 (468)
296 2f1r_A Molybdopterin-guanine d 94.3 0.015 5.2E-07 55.2 2.0 26 20-45 2-27 (171)
297 2dr3_A UPF0273 protein PH0284; 94.2 0.023 7.9E-07 55.4 3.3 25 19-43 22-46 (247)
298 1cr0_A DNA primase/helicase; R 94.2 0.023 7.9E-07 57.8 3.4 25 19-43 34-58 (296)
299 1u94_A RECA protein, recombina 94.2 0.079 2.7E-06 56.1 7.5 36 19-54 62-100 (356)
300 2bjv_A PSP operon transcriptio 94.1 0.038 1.3E-06 55.1 4.7 34 20-53 29-65 (265)
301 1xp8_A RECA protein, recombina 94.1 0.066 2.2E-06 57.0 6.7 36 19-54 73-111 (366)
302 3p32_A Probable GTPase RV1496/ 94.0 0.048 1.6E-06 57.5 5.5 38 17-54 76-116 (355)
303 1zu4_A FTSY; GTPase, signal re 94.0 0.037 1.3E-06 57.8 4.5 39 18-56 103-144 (320)
304 2og2_A Putative signal recogni 94.0 0.032 1.1E-06 59.3 4.0 27 18-44 155-181 (359)
305 1yrb_A ATP(GTP)binding protein 94.0 0.051 1.7E-06 53.8 5.3 38 18-55 12-51 (262)
306 2eyu_A Twitching motility prot 93.9 0.036 1.2E-06 56.1 4.1 27 18-44 23-49 (261)
307 1oix_A RAS-related protein RAB 93.9 0.036 1.2E-06 52.4 3.8 26 19-44 28-53 (191)
308 3oj7_A Putative histidine tria 93.9 0.037 1.3E-06 48.9 3.7 31 576-606 21-51 (117)
309 3te6_A Regulatory protein SIR3 93.9 0.029 9.8E-07 58.7 3.3 28 17-44 42-69 (318)
310 3pxi_A Negative regulator of g 93.9 0.092 3.1E-06 60.9 7.9 76 22-99 523-602 (758)
311 2v9p_A Replication protein E1; 93.9 0.031 1.1E-06 58.1 3.5 26 19-44 125-150 (305)
312 2zr9_A Protein RECA, recombina 93.8 0.12 4.3E-06 54.4 8.2 36 19-54 60-98 (349)
313 3tqf_A HPR(Ser) kinase; transf 93.8 0.037 1.3E-06 53.1 3.6 33 21-56 17-49 (181)
314 1r6b_X CLPA protein; AAA+, N-t 93.8 0.096 3.3E-06 60.6 7.9 70 19-88 206-289 (758)
315 3ch4_B Pmkase, phosphomevalona 93.8 0.044 1.5E-06 53.6 4.2 102 18-122 9-144 (202)
316 3czp_A Putative polyphosphate 93.8 0.16 5.5E-06 56.2 9.2 107 17-129 40-172 (500)
317 2orw_A Thymidine kinase; TMTK, 93.7 0.036 1.2E-06 52.9 3.5 24 21-44 4-27 (184)
318 2gno_A DNA polymerase III, gam 93.7 0.2 6.9E-06 51.7 9.3 101 20-125 18-132 (305)
319 3tif_A Uncharacterized ABC tra 93.6 0.031 1.1E-06 55.6 2.9 26 19-44 30-55 (235)
320 3pxi_A Negative regulator of g 93.5 0.041 1.4E-06 63.8 4.2 24 21-44 202-225 (758)
321 1nlf_A Regulatory protein REPA 93.5 0.032 1.1E-06 56.4 2.9 25 19-43 29-53 (279)
322 2r6a_A DNAB helicase, replicat 93.5 0.51 1.7E-05 51.2 12.6 35 19-53 202-240 (454)
323 2i3b_A HCR-ntpase, human cance 93.5 0.035 1.2E-06 53.4 3.0 23 22-44 3-25 (189)
324 2onk_A Molybdate/tungstate ABC 93.3 0.041 1.4E-06 55.0 3.2 24 21-44 25-48 (240)
325 3iev_A GTP-binding protein ERA 93.3 0.23 7.8E-06 51.1 9.0 29 15-43 5-33 (308)
326 2pcj_A ABC transporter, lipopr 93.2 0.034 1.2E-06 54.9 2.5 26 19-44 29-54 (224)
327 2fna_A Conserved hypothetical 93.2 0.19 6.6E-06 51.3 8.3 35 21-55 31-65 (357)
328 1dek_A Deoxynucleoside monopho 93.1 0.069 2.4E-06 53.6 4.5 30 21-52 2-31 (241)
329 2cbz_A Multidrug resistance-as 93.1 0.041 1.4E-06 54.7 2.9 26 19-44 30-55 (237)
330 1g8p_A Magnesium-chelatase 38 93.1 0.03 1E-06 57.8 1.9 23 23-45 48-70 (350)
331 2zts_A Putative uncharacterize 93.1 0.049 1.7E-06 53.1 3.3 35 19-53 29-67 (251)
332 1z2a_A RAS-related protein RAB 93.0 0.06 2E-06 48.6 3.6 25 19-43 4-28 (168)
333 1v5w_A DMC1, meiotic recombina 92.9 0.081 2.8E-06 55.5 5.0 26 18-43 120-145 (343)
334 1mv5_A LMRA, multidrug resista 92.9 0.051 1.7E-06 54.2 3.2 26 19-44 27-52 (243)
335 2qgz_A Helicase loader, putati 92.8 0.067 2.3E-06 55.3 4.2 64 20-86 152-223 (308)
336 1u0j_A DNA replication protein 92.8 0.065 2.2E-06 54.6 3.9 28 18-45 102-129 (267)
337 1b0u_A Histidine permease; ABC 92.8 0.047 1.6E-06 55.2 2.9 26 19-44 31-56 (262)
338 2wsm_A Hydrogenase expression/ 92.8 0.069 2.4E-06 51.3 3.9 27 19-45 29-55 (221)
339 4g1u_C Hemin import ATP-bindin 92.7 0.047 1.6E-06 55.4 2.8 26 19-44 36-61 (266)
340 2q6t_A DNAB replication FORK h 92.7 0.41 1.4E-05 51.8 10.4 35 19-53 199-237 (444)
341 2wji_A Ferrous iron transport 92.7 0.068 2.3E-06 49.0 3.6 22 21-42 4-25 (165)
342 2z43_A DNA repair and recombin 92.7 0.068 2.3E-06 55.5 4.0 26 19-44 106-131 (324)
343 2ewv_A Twitching motility prot 92.7 0.068 2.3E-06 56.9 4.0 27 18-44 134-160 (372)
344 3bgw_A DNAB-like replicative h 92.7 0.32 1.1E-05 53.0 9.4 35 19-53 196-233 (444)
345 1lw7_A Transcriptional regulat 92.7 0.065 2.2E-06 56.5 3.8 26 20-45 170-195 (365)
346 3gfo_A Cobalt import ATP-bindi 92.6 0.044 1.5E-06 56.0 2.4 26 19-44 33-58 (275)
347 2olj_A Amino acid ABC transpor 92.6 0.052 1.8E-06 55.1 2.9 26 19-44 49-74 (263)
348 3b85_A Phosphate starvation-in 92.6 0.047 1.6E-06 53.3 2.4 24 20-43 22-45 (208)
349 2zu0_C Probable ATP-dependent 92.5 0.064 2.2E-06 54.4 3.4 25 19-43 45-69 (267)
350 2d2e_A SUFC protein; ABC-ATPas 92.5 0.062 2.1E-06 53.9 3.3 25 19-43 28-52 (250)
351 2wjg_A FEOB, ferrous iron tran 92.5 0.081 2.8E-06 49.0 3.9 25 19-43 6-30 (188)
352 2ff7_A Alpha-hemolysin translo 92.5 0.049 1.7E-06 54.6 2.5 27 19-45 34-60 (247)
353 1ji0_A ABC transporter; ATP bi 92.5 0.05 1.7E-06 54.2 2.5 26 19-44 31-56 (240)
354 4dcu_A GTP-binding protein ENG 92.5 0.28 9.7E-06 53.3 8.7 22 21-42 24-45 (456)
355 3p0t_A Uncharacterized protein 92.5 0.083 2.8E-06 48.0 3.8 37 576-613 19-55 (138)
356 1fit_A FragIle histidine prote 92.5 0.071 2.4E-06 49.0 3.3 29 577-605 14-42 (147)
357 2ixe_A Antigen peptide transpo 92.4 0.057 1.9E-06 54.9 2.9 27 19-45 44-70 (271)
358 1pzn_A RAD51, DNA repair and r 92.4 0.064 2.2E-06 56.5 3.4 26 19-44 130-155 (349)
359 2ce2_X GTPase HRAS; signaling 92.4 0.085 2.9E-06 47.1 3.7 23 21-43 4-26 (166)
360 1g6h_A High-affinity branched- 92.4 0.052 1.8E-06 54.7 2.5 26 19-44 32-57 (257)
361 1ls1_A Signal recognition part 92.4 0.12 4.1E-06 53.1 5.3 38 19-56 97-137 (295)
362 2ghi_A Transport protein; mult 92.4 0.059 2E-06 54.4 2.9 26 19-44 45-70 (260)
363 2qm8_A GTPase/ATPase; G protei 92.4 0.075 2.6E-06 55.7 3.8 26 18-43 53-78 (337)
364 1kao_A RAP2A; GTP-binding prot 92.3 0.088 3E-06 47.2 3.8 23 21-43 4-26 (167)
365 2hf9_A Probable hydrogenase ni 92.3 0.09 3.1E-06 50.6 4.1 26 19-44 37-62 (226)
366 1vpl_A ABC transporter, ATP-bi 92.3 0.06 2E-06 54.4 2.9 26 19-44 40-65 (256)
367 2pze_A Cystic fibrosis transme 92.3 0.055 1.9E-06 53.5 2.5 26 19-44 33-58 (229)
368 3ksv_A Uncharacterized protein 92.3 0.089 3E-06 48.8 3.8 37 576-613 25-61 (149)
369 2f9l_A RAB11B, member RAS onco 92.2 0.069 2.3E-06 50.6 3.0 24 20-43 5-28 (199)
370 3kta_A Chromosome segregation 92.2 0.07 2.4E-06 49.8 3.0 26 20-45 26-51 (182)
371 2yz2_A Putative ABC transporte 92.2 0.063 2.2E-06 54.3 2.9 26 19-44 32-57 (266)
372 1sgw_A Putative ABC transporte 92.2 0.052 1.8E-06 53.3 2.2 25 20-44 35-59 (214)
373 1upt_A ARL1, ADP-ribosylation 92.2 0.11 3.6E-06 47.2 4.1 26 18-43 5-30 (171)
374 3jvv_A Twitching mobility prot 92.1 0.089 3E-06 55.7 4.0 103 19-123 122-241 (356)
375 4dey_A Voltage-dependent L-typ 92.1 0.72 2.5E-05 48.4 10.8 100 23-127 145-274 (337)
376 1pui_A ENGB, probable GTP-bind 92.1 0.052 1.8E-06 51.5 2.0 24 19-42 25-48 (210)
377 1xqu_A HIT family hydrolase; p 92.1 0.065 2.2E-06 49.7 2.6 40 564-605 39-78 (147)
378 2dyk_A GTP-binding protein; GT 92.1 0.081 2.8E-06 47.4 3.2 22 22-43 3-24 (161)
379 1u8z_A RAS-related protein RAL 92.1 0.093 3.2E-06 47.1 3.6 24 20-43 4-27 (168)
380 3io5_A Recombination and repai 92.0 0.22 7.6E-06 52.1 6.8 22 22-43 30-51 (333)
381 2qi9_C Vitamin B12 import ATP- 92.0 0.062 2.1E-06 54.0 2.5 26 19-44 25-50 (249)
382 2p67_A LAO/AO transport system 92.0 0.14 4.7E-06 53.7 5.2 37 18-54 54-93 (341)
383 3czp_A Putative polyphosphate 92.0 0.21 7.1E-06 55.4 6.9 108 18-130 298-430 (500)
384 2erx_A GTP-binding protein DI- 92.0 0.097 3.3E-06 47.3 3.6 23 20-42 3-25 (172)
385 2lkc_A Translation initiation 92.0 0.093 3.2E-06 48.0 3.5 25 19-43 7-31 (178)
386 3clv_A RAB5 protein, putative; 91.9 0.11 3.9E-06 48.1 4.1 25 19-43 6-30 (208)
387 2gj8_A MNME, tRNA modification 91.9 0.094 3.2E-06 48.6 3.5 24 20-43 4-27 (172)
388 2hxs_A RAB-26, RAS-related pro 91.9 0.11 3.7E-06 47.6 3.9 25 19-43 5-29 (178)
389 1r6b_X CLPA protein; AAA+, N-t 91.9 0.12 4.3E-06 59.6 5.3 36 22-57 490-525 (758)
390 2ihy_A ABC transporter, ATP-bi 91.9 0.064 2.2E-06 54.8 2.5 27 19-45 46-72 (279)
391 2fn4_A P23, RAS-related protei 91.8 0.11 3.9E-06 47.3 4.0 25 19-43 8-32 (181)
392 2nq2_C Hypothetical ABC transp 91.8 0.066 2.3E-06 53.9 2.5 26 19-44 30-55 (253)
393 1ky3_A GTP-binding protein YPT 91.8 0.11 3.7E-06 47.5 3.8 25 19-43 7-31 (182)
394 1ojl_A Transcriptional regulat 91.8 0.092 3.1E-06 54.1 3.6 33 20-52 25-60 (304)
395 4dsu_A GTPase KRAS, isoform 2B 91.8 0.1 3.5E-06 48.1 3.6 25 19-43 3-27 (189)
396 3r6f_A HIT family protein; str 91.7 0.1 3.5E-06 47.4 3.4 37 576-613 18-54 (135)
397 2www_A Methylmalonic aciduria 91.7 0.1 3.5E-06 54.9 3.9 25 19-43 73-97 (349)
398 1nrj_B SR-beta, signal recogni 91.7 0.1 3.5E-06 49.8 3.6 26 19-44 11-36 (218)
399 1z08_A RAS-related protein RAB 91.7 0.11 3.8E-06 46.9 3.7 25 19-43 5-29 (170)
400 2bme_A RAB4A, RAS-related prot 91.7 0.12 4E-06 47.7 3.8 25 19-43 9-33 (186)
401 2nzj_A GTP-binding protein REM 91.6 0.12 4E-06 47.1 3.7 23 20-42 4-26 (175)
402 1c1y_A RAS-related protein RAP 91.6 0.11 3.9E-06 46.6 3.6 23 21-43 4-26 (167)
403 2ged_A SR-beta, signal recogni 91.6 0.11 3.7E-06 48.4 3.6 26 19-44 47-72 (193)
404 1zcb_A G alpha I/13; GTP-bindi 91.6 0.075 2.6E-06 56.4 2.7 28 18-45 31-58 (362)
405 3sop_A Neuronal-specific septi 91.6 0.091 3.1E-06 53.4 3.2 23 22-44 4-26 (270)
406 1ek0_A Protein (GTP-binding pr 91.5 0.11 3.9E-06 46.7 3.5 23 21-43 4-26 (170)
407 3fvq_A Fe(3+) IONS import ATP- 91.5 0.094 3.2E-06 55.7 3.4 26 19-44 29-54 (359)
408 3bc1_A RAS-related protein RAB 91.5 0.12 4.3E-06 47.5 3.9 25 19-43 10-34 (195)
409 3q85_A GTP-binding protein REM 91.5 0.098 3.4E-06 47.4 3.0 20 22-41 4-23 (169)
410 2zej_A Dardarin, leucine-rich 91.4 0.081 2.8E-06 49.4 2.5 21 22-42 4-24 (184)
411 3q72_A GTP-binding protein RAD 91.4 0.092 3.2E-06 47.4 2.8 20 22-41 4-23 (166)
412 1r2q_A RAS-related protein RAB 91.4 0.11 3.7E-06 46.8 3.3 25 19-43 5-29 (170)
413 2b8t_A Thymidine kinase; deoxy 91.4 0.12 4.2E-06 51.1 3.9 27 18-44 10-36 (223)
414 3tw8_B RAS-related protein RAB 91.4 0.11 3.8E-06 47.4 3.4 24 19-42 8-31 (181)
415 3bh0_A DNAB-like replicative h 91.4 0.11 3.8E-06 53.8 3.7 26 18-43 66-91 (315)
416 3lb5_A HIT-like protein involv 91.4 0.12 4E-06 48.6 3.6 42 563-606 31-72 (161)
417 1p9r_A General secretion pathw 91.3 0.13 4.3E-06 55.8 4.2 28 18-45 165-192 (418)
418 1y23_A HIT, histidine triad pr 91.3 0.14 4.6E-06 46.8 3.8 30 576-605 19-48 (145)
419 1g16_A RAS-related protein SEC 91.3 0.13 4.6E-06 46.3 3.7 23 21-43 4-26 (170)
420 1z0j_A RAB-22, RAS-related pro 91.3 0.13 4.3E-06 46.5 3.5 25 20-44 6-30 (170)
421 2g6b_A RAS-related protein RAB 91.2 0.14 4.8E-06 46.8 3.9 26 18-43 8-33 (180)
422 2i1q_A DNA repair and recombin 91.2 0.12 4.1E-06 53.3 3.7 25 19-43 97-121 (322)
423 1wms_A RAB-9, RAB9, RAS-relate 91.2 0.12 4.3E-06 47.0 3.4 24 20-43 7-30 (177)
424 2efe_B Small GTP-binding prote 91.2 0.13 4.6E-06 47.0 3.7 25 19-43 11-35 (181)
425 1z0f_A RAB14, member RAS oncog 91.1 0.14 4.9E-06 46.5 3.8 25 19-43 14-38 (179)
426 2qen_A Walker-type ATPase; unk 91.1 0.16 5.6E-06 51.7 4.7 31 21-53 32-62 (350)
427 3nbx_X ATPase RAVA; AAA+ ATPas 91.1 0.074 2.5E-06 58.9 2.2 24 22-45 43-66 (500)
428 3rlf_A Maltose/maltodextrin im 91.1 0.11 3.8E-06 55.6 3.4 26 19-44 28-53 (381)
429 1moz_A ARL1, ADP-ribosylation 91.1 0.11 3.7E-06 47.9 2.9 24 18-41 16-39 (183)
430 3lda_A DNA repair protein RAD5 91.1 0.11 3.6E-06 56.1 3.2 25 19-43 177-201 (400)
431 2yyz_A Sugar ABC transporter, 91.0 0.11 3.9E-06 55.1 3.4 26 19-44 28-53 (359)
432 2oil_A CATX-8, RAS-related pro 91.0 0.15 5E-06 47.7 3.8 26 18-43 23-48 (193)
433 2y8e_A RAB-protein 6, GH09086P 91.0 0.13 4.5E-06 46.8 3.5 24 20-43 14-37 (179)
434 2fg5_A RAB-22B, RAS-related pr 91.0 0.14 4.6E-06 48.1 3.6 28 16-43 19-46 (192)
435 1svi_A GTP-binding protein YSX 91.0 0.13 4.4E-06 47.9 3.5 25 19-43 22-46 (195)
436 3t5g_A GTP-binding protein RHE 91.0 0.12 4.2E-06 47.5 3.2 25 19-43 5-29 (181)
437 3o0m_A HIT family protein; ssg 91.0 0.14 4.8E-06 47.3 3.6 31 576-606 19-49 (149)
438 1m7b_A RND3/RHOE small GTP-bin 91.0 0.14 4.9E-06 47.5 3.7 25 19-43 6-30 (184)
439 3con_A GTPase NRAS; structural 91.0 0.14 4.8E-06 47.5 3.7 24 20-43 21-44 (190)
440 2eo4_A 150AA long hypothetical 91.0 0.15 5.1E-06 46.9 3.8 30 576-605 13-42 (149)
441 2pjz_A Hypothetical protein ST 90.9 0.1 3.4E-06 52.9 2.7 25 20-44 30-54 (263)
442 3tui_C Methionine import ATP-b 90.9 0.12 4E-06 55.1 3.4 26 19-44 53-78 (366)
443 2it1_A 362AA long hypothetical 90.9 0.12 4.1E-06 55.0 3.4 26 19-44 28-53 (362)
444 1fzq_A ADP-ribosylation factor 90.9 0.15 5E-06 47.5 3.7 26 18-43 14-39 (181)
445 3nh6_A ATP-binding cassette SU 90.8 0.082 2.8E-06 54.9 2.0 27 19-45 79-105 (306)
446 1wf3_A GTP-binding protein; GT 90.8 0.58 2E-05 48.1 8.4 24 20-43 7-30 (301)
447 3kkq_A RAS-related protein M-R 90.8 0.16 5.5E-06 46.7 3.8 25 19-43 17-41 (183)
448 2bbs_A Cystic fibrosis transme 90.8 0.11 3.7E-06 53.5 2.9 26 19-44 63-88 (290)
449 1nij_A Hypothetical protein YJ 90.7 0.13 4.3E-06 53.4 3.3 25 20-44 4-28 (318)
450 1vg8_A RAS-related protein RAB 90.7 0.16 5.4E-06 47.8 3.8 25 19-43 7-31 (207)
451 1r8s_A ADP-ribosylation factor 90.7 0.15 5E-06 46.0 3.4 21 23-43 3-23 (164)
452 1v43_A Sugar-binding transport 90.7 0.13 4.3E-06 54.9 3.4 26 19-44 36-61 (372)
453 1z47_A CYSA, putative ABC-tran 90.7 0.12 3.9E-06 54.9 3.0 26 19-44 40-65 (355)
454 2a9k_A RAS-related protein RAL 90.6 0.16 5.3E-06 46.6 3.6 24 20-43 18-41 (187)
455 2hjg_A GTP-binding protein ENG 90.6 0.56 1.9E-05 50.6 8.5 21 22-42 5-25 (436)
456 2gf0_A GTP-binding protein DI- 90.6 0.18 6E-06 47.1 4.0 25 19-43 7-31 (199)
457 3pqc_A Probable GTP-binding pr 90.6 0.15 5.1E-06 47.2 3.4 24 20-43 23-46 (195)
458 2h17_A ADP-ribosylation factor 90.6 0.14 4.9E-06 47.4 3.3 26 18-43 19-44 (181)
459 3imi_A HIT family protein; str 90.6 0.17 5.9E-06 46.5 3.8 31 576-606 23-53 (147)
460 3d31_A Sulfate/molybdate ABC t 90.6 0.1 3.6E-06 55.1 2.6 26 19-44 25-50 (348)
461 2cxx_A Probable GTP-binding pr 90.5 0.13 4.6E-06 47.4 3.0 22 22-43 3-24 (190)
462 1g29_1 MALK, maltose transport 90.4 0.13 4.3E-06 54.9 3.0 26 19-44 28-53 (372)
463 1w5s_A Origin recognition comp 90.3 0.13 4.5E-06 54.0 3.1 26 19-44 49-76 (412)
464 1xx6_A Thymidine kinase; NESG, 90.2 0.2 6.9E-06 48.2 4.1 26 19-44 7-32 (191)
465 2bov_A RAla, RAS-related prote 90.2 0.19 6.4E-06 47.2 3.8 24 20-43 14-37 (206)
466 3gd7_A Fusion complex of cysti 90.2 0.15 5E-06 54.8 3.4 24 19-42 46-69 (390)
467 3tkl_A RAS-related protein RAB 90.2 0.19 6.6E-06 46.7 3.9 25 19-43 15-39 (196)
468 1mh1_A RAC1; GTP-binding, GTPa 90.2 0.16 5.5E-06 46.6 3.2 24 20-43 5-28 (186)
469 3ihw_A Centg3; RAS, centaurin, 90.1 0.21 7.1E-06 46.7 4.0 25 19-43 19-43 (184)
470 3k1j_A LON protease, ATP-depen 90.1 0.14 4.7E-06 57.9 3.2 25 21-45 61-85 (604)
471 3lxx_A GTPase IMAP family memb 90.1 0.17 6E-06 49.5 3.6 25 19-43 28-52 (239)
472 3l7x_A SMU.412C, putative HIT- 90.0 0.2 6.7E-06 47.7 3.8 31 576-606 50-80 (173)
473 1tf7_A KAIC; homohexamer, hexa 89.9 0.13 4.5E-06 57.0 2.9 24 18-41 37-60 (525)
474 1ksh_A ARF-like protein 2; sma 89.9 0.19 6.4E-06 46.5 3.5 25 18-42 16-40 (186)
475 1zj6_A ADP-ribosylation factor 89.9 0.2 7E-06 46.5 3.7 26 18-43 14-39 (187)
476 1oxx_K GLCV, glucose, ABC tran 89.9 0.11 3.7E-06 55.0 2.0 26 19-44 30-55 (353)
477 3bwd_D RAC-like GTP-binding pr 89.9 0.19 6.5E-06 46.0 3.5 25 19-43 7-31 (182)
478 1m2o_B GTP-binding protein SAR 89.9 0.18 6E-06 47.4 3.3 25 19-43 22-46 (190)
479 1z06_A RAS-related protein RAB 89.9 0.21 7.1E-06 46.5 3.8 25 19-43 19-43 (189)
480 4akg_A Glutathione S-transfera 89.9 0.48 1.7E-05 62.1 8.3 85 3-92 628-712 (2695)
481 2pt7_A CAG-ALFA; ATPase, prote 89.8 0.1 3.5E-06 54.5 1.8 124 20-146 171-307 (330)
482 2atv_A RERG, RAS-like estrogen 89.8 0.21 7.3E-06 46.8 3.8 25 19-43 27-51 (196)
483 3reg_A RHO-like small GTPase; 89.8 0.2 7E-06 46.8 3.7 26 18-43 21-46 (194)
484 3t1o_A Gliding protein MGLA; G 89.8 0.19 6.6E-06 46.5 3.4 27 19-45 13-39 (198)
485 3c5c_A RAS-like protein 12; GD 89.7 0.22 7.4E-06 46.6 3.8 25 19-43 20-44 (187)
486 2a5j_A RAS-related protein RAB 89.7 0.22 7.6E-06 46.5 3.8 25 19-43 20-44 (191)
487 2yv5_A YJEQ protein; hydrolase 89.7 0.17 5.9E-06 52.1 3.3 25 20-45 165-189 (302)
488 2p5s_A RAS and EF-hand domain 89.7 0.21 7.3E-06 47.0 3.7 25 19-43 27-51 (199)
489 1zd9_A ADP-ribosylation factor 89.7 0.22 7.4E-06 46.5 3.7 25 19-43 21-45 (188)
490 1gwn_A RHO-related GTP-binding 89.6 0.21 7.3E-06 47.7 3.7 25 19-43 27-51 (205)
491 3oes_A GTPase rhebl1; small GT 89.6 0.22 7.4E-06 47.0 3.7 24 20-43 24-47 (201)
492 3dz8_A RAS-related protein RAB 89.6 0.19 6.6E-06 46.9 3.3 26 19-44 22-47 (191)
493 1x3s_A RAS-related protein RAB 89.6 0.21 7.1E-06 46.3 3.5 24 20-43 15-38 (195)
494 2gf9_A RAS-related protein RAB 89.6 0.23 7.8E-06 46.2 3.8 25 19-43 21-45 (189)
495 4bas_A ADP-ribosylation factor 89.6 0.2 6.8E-06 46.7 3.4 26 17-42 14-39 (199)
496 1f6b_A SAR1; gtpases, N-termin 89.5 0.19 6.5E-06 47.6 3.2 24 19-42 24-47 (198)
497 1zbd_A Rabphilin-3A; G protein 89.4 0.18 6.2E-06 47.4 3.0 24 20-43 8-31 (203)
498 2iwr_A Centaurin gamma 1; ANK 89.4 0.2 6.9E-06 45.8 3.3 24 20-43 7-30 (178)
499 2rcn_A Probable GTPase ENGC; Y 89.4 0.18 6.2E-06 53.5 3.3 24 20-43 215-238 (358)
500 2fh5_B SR-beta, signal recogni 89.3 0.2 6.9E-06 47.6 3.3 25 19-43 6-30 (214)
No 1
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=99.95 E-value=3.9e-29 Score=240.04 Aligned_cols=118 Identities=25% Similarity=0.214 Sum_probs=105.7
Q ss_pred eEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCC
Q 006654 343 KKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP 415 (636)
Q Consensus 343 ~~v~v~~GDIt~----~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~ 415 (636)
.+|.+++||||+ +. +||||||||+.|. +||||++||+++||++|++||+++. +++++|++++|+
T Consensus 10 ~~i~l~~GDIt~~~~~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-- 80 (168)
T 3eti_A 10 GKVSFYQGDLDVLINFLE------PDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFE-- 80 (168)
T ss_dssp TTEEEEESCHHHHHHHHC------CSEEEEEECTTCC-CCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEE--
T ss_pred CeEEEEeCcccccCCCCC------CCEEEeCCCcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEec--
Confidence 468999999999 66 9999999999999 9999999999999999999999973 789999999999
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcCc
Q 006654 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~~ 485 (636)
+| |+++||||+|||.|+.. ...++|++||++||+.+.|||||+||+|.+-.|.-
T Consensus 81 ----g~--l~~~~VIHtVgP~~~~~----------~~~~~L~~~y~~~L~~~~SIAfP~IstG~~g~P~~ 134 (168)
T 3eti_A 81 ----NV--LEHLSVMNAVGPRNGDS----------RVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLE 134 (168)
T ss_dssp ----EE--ETTEEEEEEECCCTTST----------THHHHHHHHHHHHHTSCSCEEECCTTBSTTCBCHH
T ss_pred ----CC--CCccEEEEecCCCCCcc----------hHHHHHHHHHHHHHHhcCceeecccccCCCCCCHH
Confidence 33 67799999999999542 35789999999999998999999999987776643
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=99.95 E-value=4e-28 Score=242.45 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=112.4
Q ss_pred hhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCcEEEecCC
Q 006654 338 KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLP 415 (636)
Q Consensus 338 ~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~--~~~~~G~avvT~l~ 415 (636)
.+.++.+|.|++||||++. +||||||||+.|.+++|||++||+++||++|++||+++. +++++|++++|+
T Consensus 34 ~t~~g~~I~i~~GDIt~~~------vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~-- 105 (221)
T 3q71_A 34 VSPGGLQMLLVKEGVQNAK------TDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTS-- 105 (221)
T ss_dssp ECTTCCEEEEEESCGGGCC------SSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEE--
T ss_pred eecCCcEEEEEeCcccCCc------CCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEc--
Confidence 5778999999999999997 999999999999547899999999999999999999974 479999999999
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR 486 (636)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~ 486 (636)
+ ++|+|+||||+|||.|+... ..+.++|++||++||++| .|||||+||++.+-.+.-+
T Consensus 106 ----g-~~Lp~k~VIHtVgP~~~~~~--------~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~ 168 (221)
T 3q71_A 106 ----S-WNLDCRYVLHVVAPEWRNGS--------TSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNI 168 (221)
T ss_dssp ----C-TTSSSSEEEEECCCCCTTTC--------HHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHH
T ss_pred ----C-CCCCCCEEEEeCCCCCcCCC--------chHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHH
Confidence 2 45899999999999997642 235689999999999986 4999999999877666533
No 3
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=99.95 E-value=7.8e-28 Score=239.62 Aligned_cols=126 Identities=29% Similarity=0.283 Sum_probs=110.8
Q ss_pred hcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCC
Q 006654 339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP 415 (636)
Q Consensus 339 ~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~ 415 (636)
..++.+|.|++||||++. +||||||||+.|. +||||++||+++||++|++||+++. +++++|++++|+
T Consensus 33 ~~~g~~I~v~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-- 103 (214)
T 3q6z_A 33 LAPGVVLIVQQGDLARLP------VDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISK-- 103 (214)
T ss_dssp EETTEEEEEEECCTTSCS------SSEEEEEECTTCC-CCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEE--
T ss_pred cCCCcEEEEEecccccCc------CCEEEeCCCCCCC-CCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEc--
Confidence 457899999999999998 9999999999999 8999999999999999999999874 789999999998
Q ss_pred CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
+ ++|+|+||||+|||.|+.... ..+.++|++||++||+.| .|||||+||+|.+-.+.-
T Consensus 104 ----~-~~L~~k~VIH~VgP~~~~~~~-------~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~ 166 (214)
T 3q6z_A 104 ----A-GKLPYHHVIHAVGPRWSGYEA-------PRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLG 166 (214)
T ss_dssp ----C-TTSSSSEEEEEECCCCCGGGH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred ----C-CCCCCCEEEEecCCcccCCCc-------chHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHH
Confidence 2 458999999999999976421 234689999999999986 499999999987766643
No 4
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=99.94 E-value=3.9e-27 Score=229.89 Aligned_cols=121 Identities=31% Similarity=0.375 Sum_probs=107.4
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCCCC
Q 006654 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSP 419 (636)
Q Consensus 343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~ 419 (636)
.+|.+++||||++. +||||||||+.|. +||||++||+++|||+|++||+++. +++++|++++|+
T Consensus 3 ~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~------ 69 (184)
T 1spv_A 3 TRIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL------ 69 (184)
T ss_dssp CCEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC------
T ss_pred CeEEEEeCcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEee------
Confidence 56999999999997 9999999999999 9999999999999999999999873 789999999998
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 420 ~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
.++|+|+||||+|||.|+.... ...++|++||++||+.| .|||||+||+|.+-.+.-
T Consensus 70 -~~~L~~k~VIH~vgP~~~~~~~--------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 131 (184)
T 1spv_A 70 -AGDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRA 131 (184)
T ss_dssp -CTTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred -CCCCCCCEEEEEcCCcccCCCc--------chHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHH
Confidence 2458899999999999976532 35789999999999987 499999999887766543
No 5
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=99.94 E-value=5.1e-27 Score=230.67 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=107.8
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCC
Q 006654 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST 417 (636)
Q Consensus 341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~ 417 (636)
.+.+|.|++||||++. +||||||||+.|. +||||++||+++||++|++||+++. +++++|++++|+
T Consensus 17 ~~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~---- 85 (193)
T 1yd9_A 17 LGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA---- 85 (193)
T ss_dssp TSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE----
T ss_pred CCCEEEEEeCccCcCc------CCEEEECCCccCC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec----
Confidence 4688999999999997 9999999999999 8999999999999999999999863 789999999998
Q ss_pred CCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 418 ~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
.++|+|+||||+|||.|+.. ...++|++||++||+.| .|||||+||++.+-.+.-
T Consensus 86 ---~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 145 (193)
T 1yd9_A 86 ---GHGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQ 145 (193)
T ss_dssp ---CTTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHH
T ss_pred ---CCCCCCCEEEEeCCCCcCCc----------chHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHH
Confidence 24588999999999999642 35789999999999986 499999999887766643
No 6
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=99.94 E-value=5.3e-27 Score=230.60 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=108.1
Q ss_pred cCCeEEEEEEccccee---cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEec
Q 006654 340 INPKKFFTFVGDITRL---YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP 413 (636)
Q Consensus 340 ~~~~~v~v~~GDIt~~---~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~ 413 (636)
..+.+|.+++||||++ . +||||||||+.|. +||||++||+++||++|++||+++. +++++|++++|+
T Consensus 16 ~~~~~i~i~~GDIt~~~~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~ 88 (193)
T 2xd7_A 16 VLGQKLSLTQSDISHIGSMR------VEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQ 88 (193)
T ss_dssp TTSCEEEEEECCGGGGGGCC------CSEEEEEECTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred CCCCEEEEEeCcccccCCCC------CCEEEECCCccCC-CccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEee
Confidence 3468899999999999 7 9999999999999 8999999999999999999999863 789999999998
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 414 l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
.+.|+|+||||+|||.|+.. ...++|++||++||+.| .|||||+||.+.+-.+.-
T Consensus 89 -------~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 148 (193)
T 2xd7_A 89 -------SSGLAAKFVIHCHIPQWGSD----------KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQ 148 (193)
T ss_dssp -------CTTSSSSEEEEEECCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHH
T ss_pred -------CCCCCCCEEEEECCCcCCCc----------chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHH
Confidence 24588999999999999642 35789999999999986 599999999887766543
No 7
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=99.94 E-value=9.9e-27 Score=234.91 Aligned_cols=121 Identities=30% Similarity=0.281 Sum_probs=107.0
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (636)
Q Consensus 343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~ 422 (636)
.+|.|++||||++. +||||||||+.|. +||||++||+++||++|++||+++ +++++|++++|+ .+
T Consensus 62 ~~i~i~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-g~~~~G~a~iT~-------~~ 126 (235)
T 2x47_A 62 EKISLLRSDITKLE------VDAIVNAANSSLL-GGGGVDGCIHRAAGPLLTDECRTL-QSCKTGKAKITG-------GY 126 (235)
T ss_dssp TTEEEEESCGGGEE------SSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHTS-CCCCBTCEEEEE-------CT
T ss_pred CEEEEEeCccCccc------CCEEEEecCcccC-CccHHHHHHHHHhCHHHHHHHHHh-CCCCCCceEEec-------CC
Confidence 56999999999998 9999999999999 999999999999999999999887 789999999998 24
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
.|+|+||||+|||.|.+.. .....++|++||++||+.| .|||||+||.|.+-.+.-
T Consensus 127 ~L~~k~VIH~vgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~ 187 (235)
T 2x47_A 127 RLPAKYVIHTVGPIAYGEP-------SASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCE 187 (235)
T ss_dssp TSSSSEEEEEBCCCCTTCC-------CHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHH
T ss_pred CCCCCEEEEecCccccCCC-------CcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHH
Confidence 5889999999999997532 1246789999999999986 499999999887766543
No 8
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=99.94 E-value=7.3e-27 Score=227.44 Aligned_cols=119 Identities=22% Similarity=0.250 Sum_probs=107.4
Q ss_pred HhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEec
Q 006654 334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP 413 (636)
Q Consensus 334 ~~~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~ 413 (636)
..+++++++.+|++++||||++. +||||||||+.|. +||||++||+++||++|++||+++ +++++|++++|+
T Consensus 13 ~~~~~~ig~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGV~~aI~~aaG~~l~~ec~~~-~~~~~G~a~iT~ 84 (183)
T 4abl_A 13 GVYEMKIGSIIFQVASGDITKEE------ADVIVNSTSNSFN-LKAGVSKAILECAGQNVERECSQQ-AQQRKNDYIITG 84 (183)
T ss_dssp TCEEEEETTEEEEEEESCGGGCB------CSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HHHSCCSEEEEE
T ss_pred CceEEEECCEEEEEEeCcccCcc------cCEEEECCCCCCC-CCccHHHHHHHHhhHHHHHHHHHh-cCCCCCceEEec
Confidence 45778899999999999999998 9999999999999 899999999999999999999987 679999999998
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 414 l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
+ ++|+|+||||+|||.| |++||++||+.| .|||||+||++.+-.+.-
T Consensus 85 ------~-~~L~~k~VIH~vgP~~------------------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 136 (183)
T 4abl_A 85 ------G-GFLRCKNIIHVIGGND------------------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPD 136 (183)
T ss_dssp ------C-TTSBSSEEEEEETTSC------------------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHH
T ss_pred ------C-CCCCCCEEEEeCcHHH------------------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHH
Confidence 2 4588999999999963 999999999986 499999999887766643
No 9
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=99.93 E-value=1.4e-26 Score=226.16 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=102.6
Q ss_pred CeEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecC
Q 006654 342 PKKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL 414 (636)
Q Consensus 342 ~~~v~v~~GDIt~----~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l 414 (636)
+.+|.+++||||+ +. +||||||||+.|. +||||++||+++||++|++||+++ .++|++|++++|+
T Consensus 37 ~~~i~l~~GDIt~~~~~~~------vDAIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~- 108 (193)
T 3ejg_A 37 HDNVAFYQGDVDTVVNGVD------FDFIVNAANENLA-HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVE- 108 (193)
T ss_dssp ETTEEEEECCHHHHHHHCC------CSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-
T ss_pred CCeEEEEeCcccccCcCCC------cCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec-
Confidence 4679999999999 65 9999999999999 999999999999999999999986 3789999999999
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcCc
Q 006654 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 415 ~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~~ 485 (636)
+++ | +|||+|||.|+. ...++|++||++||+...|||||+||+|.+-.+.-
T Consensus 109 -----~~~-L---~VIHtVGP~~~~-----------~~~~~L~~~y~~~L~~~~SIAfPaIstGi~G~P~~ 159 (193)
T 3ejg_A 109 -----CDS-L---RIFNVVGPRKGK-----------HERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLE 159 (193)
T ss_dssp -----ETT-E---EEEEEECCCSST-----------THHHHHHHHHHHHHHSSSCEEECCTTCGGGCCCHH
T ss_pred -----CCC-e---eEEEecCCCCCc-----------hHHHHHHHHHHHHHHhcCceeecccccCCCCCCHH
Confidence 333 4 999999999953 24789999999999988999999999887766543
No 10
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=99.92 E-value=2.2e-25 Score=212.61 Aligned_cols=116 Identities=27% Similarity=0.272 Sum_probs=104.1
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (636)
Q Consensus 343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~ 422 (636)
++|.+++|||+++. +|||||+||+.|. +||||++||++++|++|+++|++. +++++|++++|+ .+
T Consensus 2 ~~i~i~~GDI~~~~------~daIVnaaN~~l~-~ggGv~~aI~~~~G~~l~~~c~~~-g~~~~G~a~it~-------~~ 66 (159)
T 2dx6_A 2 ARIRVVQGDITEFQ------GDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRI-GKIRVGEAAVTG-------AG 66 (159)
T ss_dssp CEEEEEESCGGGCC------SSEEEEEEETTCC-CCSTTHHHHHHHHCTHHHHHHHHH-CCCCTTCEEEEE-------CT
T ss_pred eEEEEEECcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHhc-CCCCCCcEEEec-------CC
Confidence 57999999999997 9999999999999 999999999999999999999987 789999999998 24
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED 484 (636)
Q Consensus 423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~ 484 (636)
.|+|+||||+|||.|+ . . ..++|++||+++|+.+ .|||||+||.+.+-.+.
T Consensus 67 ~L~~~~Vih~vgp~~~-~-~---------~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~ 122 (159)
T 2dx6_A 67 NLPVRYVIHAAVLGDE-P-A---------SLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPV 122 (159)
T ss_dssp TSSSSEEEEEEEESSS-C-C---------CHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCH
T ss_pred CCCCCEEEEEeCCCCC-C-c---------hHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCH
Confidence 5788999999999996 2 1 2689999999999986 49999999988766553
No 11
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=99.92 E-value=6.4e-26 Score=220.52 Aligned_cols=117 Identities=25% Similarity=0.298 Sum_probs=102.4
Q ss_pred CeEEEEEEccccee----cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecC
Q 006654 342 PKKFFTFVGDITRL----YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL 414 (636)
Q Consensus 342 ~~~v~v~~GDIt~~----~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l 414 (636)
+.+|.|++||||++ . +||||||||+.|. +||||++||+++||++|++||+++ .+++++|++++|+
T Consensus 19 ~~~i~i~~GDIt~~~~~~~------vDAIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~- 90 (182)
T 2acf_A 19 TDNVAIKCVDIVKEAQSAN------PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS- 90 (182)
T ss_dssp SSSEEEEESCHHHHHHHHC------CSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE-
T ss_pred CCeEEEEeCcccccccCCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEEee-
Confidence 35799999999999 7 9999999999999 999999999999999999999986 3889999999998
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcC
Q 006654 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNED 484 (636)
Q Consensus 415 ~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~ 484 (636)
+++ |+ ++|||+|||.|..+. ..++|++||+++ ..+.|||||+||+|.+-.+.
T Consensus 91 -----~~~-L~-~~VIH~vgP~~~~~~----------~~~~L~~~y~~~-~~~~SIAfP~IstGi~G~p~ 142 (182)
T 2acf_A 91 -----GHN-LA-KKCLHVVGPNLNAGE----------DIQLLKAAYENF-NSQDILLAPLLSAGIFGAKP 142 (182)
T ss_dssp -----CTT-TC-SEEEEECCCCGGGTC----------CTTHHHHHHHGG-GGSSEEEECCTTCGGGCCCH
T ss_pred -----CCC-CC-ceEEEECCCCCCCCc----------hHHHHHHHHHHh-cCCCEEEECCcccCCCCCCH
Confidence 333 54 799999999997532 257999999998 67899999999988776654
No 12
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=99.92 E-value=8.7e-26 Score=216.56 Aligned_cols=114 Identities=23% Similarity=0.196 Sum_probs=97.8
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (636)
Q Consensus 343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~ 422 (636)
....|++||||++. +||||||||+.|. +||||++||+++||++++ .+++++|++++|+.
T Consensus 10 ~~~~~~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~-------- 68 (168)
T 3gpg_A 10 PSYRVKRMDIAKND------EECVVNAANPRGL-PGDGVCKAVYKKWPESFK------NSATPVGTAKTVMC-------- 68 (168)
T ss_dssp CCC-CEESCGGGCC------SSCEEEECCTTCC-CCSHHHHHHHHHCGGGGT------TCCCCTTCEEEEEE--------
T ss_pred CceEEEeCcCCccc------CCEEEeCCCcccC-CCchHHHHHHHHhhHHhh------cCCCCCCCEEEecC--------
Confidence 45679999999998 9999999999999 899999999999999874 37899999999993
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR 486 (636)
Q Consensus 423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~ 486 (636)
+|+||||+|||.|+... ..++.++|++||++||++| .|||||+||+|.+-.+.-+
T Consensus 69 --~~k~VIHtVGP~~~~~~-------~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~ 128 (168)
T 3gpg_A 69 --GTYPVIHAVGPNFSNYS-------ESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDR 128 (168)
T ss_dssp --TTEEEEEECCCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCC
T ss_pred --CCCEEEEeCCCCcCCCC-------cchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHH
Confidence 36999999999998653 1234689999999999986 4999999999877766544
No 13
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=99.92 E-value=1.3e-25 Score=215.38 Aligned_cols=115 Identities=27% Similarity=0.348 Sum_probs=99.7
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCC
Q 006654 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC 421 (636)
Q Consensus 342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~ 421 (636)
..+|.+++||||++. +||||||||+.|. +||||++||+++||++|+ .+.+++|++++|+.
T Consensus 3 ~~~i~v~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~------- 62 (168)
T 3gqe_A 3 APSYHVVRGDIATAT------EGVIINAANSKGQ-PGGGVCGALYKKFPESFD------LQPIEVGKARLVKG------- 62 (168)
T ss_dssp CCEEEEEESCGGGCC------SSEEEEEECTTSC-CTTGGGSHHHHHCGGGCC------CCCCCTTCEEEECC-------
T ss_pred CCeEEEEeCcccCcc------cCEEEeCCCcccC-CCccHHHHHHHHhhHHhc------CCCcCCCcEEEEcC-------
Confidence 468999999999997 9999999999999 899999999999999875 37899999999993
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654 422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR 486 (636)
Q Consensus 422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~ 486 (636)
+|+||||+|||.|+... ..++.++|++||++||++| .|||||+||+|.+-.+.-+
T Consensus 63 ---~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~ 122 (168)
T 3gqe_A 63 ---AAKHIIHAVGPNFNKVS-------EVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDR 122 (168)
T ss_dssp ---TTCCEEEEECCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCC
T ss_pred ---CCCEEEEcCCCccCCCC-------chhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHH
Confidence 36999999999998652 1234689999999999986 5999999999877666544
No 14
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=99.92 E-value=2.7e-25 Score=218.78 Aligned_cols=118 Identities=27% Similarity=0.291 Sum_probs=106.4
Q ss_pred hhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecC
Q 006654 335 AAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPL 414 (636)
Q Consensus 335 ~~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l 414 (636)
.+++++++.+|++++||||++. +||||||||+.|. +||||++||+++||++|++||+++ +.+++|++++|+
T Consensus 25 ~~~~~i~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-~~~~~G~a~iT~- 95 (199)
T 3kh6_A 25 AYEMKIGAITFQVATGDIATEQ------VDVIVNSTARTFN-RKSGVSRAILEGAGQAVESECAVL-AAQPHRDFIITP- 95 (199)
T ss_dssp EEEEEETTEEEEEEESCGGGCC------SSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HTSCCCSSEEEE-
T ss_pred ceEEEECCEEEEEEecccccCc------CCEEEECCCCCCC-CCchHHHHHHHHhhHHHHHHHHHh-CCCCCCeEEEec-
Confidence 4778899999999999999997 9999999999999 899999999999999999999998 679999999998
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654 415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 415 ~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~ 485 (636)
+ ..|+|+||||+|||. .|++||++||+.| .|||||+||+|.+-.+.-
T Consensus 96 -----g-~~L~~k~VIH~vgp~------------------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~ 147 (199)
T 3kh6_A 96 -----G-GCLKCKIIIHVPGGK------------------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPI 147 (199)
T ss_dssp -----C-TTSSSSEEEEEETTS------------------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHH
T ss_pred -----C-CCCCCCEEEEeCCCH------------------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHH
Confidence 2 458899999999983 3899999999986 499999999887766543
No 15
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=99.92 E-value=1.5e-25 Score=216.30 Aligned_cols=126 Identities=22% Similarity=0.192 Sum_probs=104.2
Q ss_pred hcCCeEEEEEEcccceecccC--cccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEec
Q 006654 339 HINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP 413 (636)
Q Consensus 339 ~~~~~~v~v~~GDIt~~~~~~--~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~ 413 (636)
.-++.++++++||||++..+. +.++||||||||+.|. +||||++||+++||++|++||+++. ++++ +++|+
T Consensus 10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT~ 85 (176)
T 3ejf_A 10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTP 85 (176)
T ss_dssp CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCC-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEEC
T ss_pred CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeecc
Confidence 446789999999999996211 2235679999999999 9999999999999999999999873 6676 78887
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHh-HHHhhccccCCCCCCCcCc
Q 006654 414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG-FLSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 414 l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~-a~siaf~~~~~~~~~~~~~ 485 (636)
| ..+.+++|||+|||.|+.. ...++|++||+++|+. +.|||||+||+|.+-.|.-
T Consensus 86 ------G-~~l~t~~VIHtVGP~~~~~----------~~~~~L~~~y~~~L~~~~~SIAfPaIstGi~g~P~~ 141 (176)
T 3ejf_A 86 ------S-FVKGIQCVNNVVGPRHGDN----------NLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFK 141 (176)
T ss_dssp ------C-CSTTEEEEEEECCCCTTCS----------CHHHHHHHHHHTTCCTTCCEEEEECCCTTSTTCCHH
T ss_pred ------c-ccccCCEEEEeCCCCCCCc----------cHHHHHHHHHHHHHHcCCcEEEECccccCCCCCCHH
Confidence 2 3467799999999999542 2478999999999983 6899999999998777653
No 16
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=99.91 E-value=2.4e-25 Score=215.22 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=102.1
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecCCCCCC
Q 006654 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTSP 419 (636)
Q Consensus 343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l~~~~~ 419 (636)
.+|.+++||||++.. ..++||||||||+.|. +||||++||+++||++|++||+++ .+++++|++++|+
T Consensus 17 ~~i~i~~GDIt~~~~--~~~~DaIVNaaN~~l~-~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~------ 87 (174)
T 2vri_A 17 KNVKFYLGDISHLVN--CVSFDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLE------ 87 (174)
T ss_dssp TTEEEEESCHHHHTT--TSCCSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE------
T ss_pred CeEEEEecccccccc--CCCccEEEECCCccCC-CCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCeEEEEE------
Confidence 569999999999810 1129999999999999 999999999999999999999986 3889999999999
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcCc
Q 006654 420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDI 485 (636)
Q Consensus 420 ~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~~ 485 (636)
+++ | ||||+|||+|+.. ..++|++||+++|+...|||||+||.+.+-.+.-
T Consensus 88 ~~~-l---~VIH~vgP~~~~~-----------~~~~L~~~y~~~L~~~~SIAfP~IstG~~g~p~~ 138 (174)
T 2vri_A 88 CEK-F---NVFNVVGPRTGKH-----------EHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIE 138 (174)
T ss_dssp CSS-C---EEEEEECCCSSTT-----------HHHHHHHHHHHHHHSSSCEEEECSSCGGGCCCHH
T ss_pred CCC-C---EEEEEcCCCCCcc-----------hHHHHHHHHHHHHhhCCcEEeCccccCCCCCCHH
Confidence 233 3 9999999999421 4789999999999988899999999887766543
No 17
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=99.91 E-value=6e-25 Score=218.71 Aligned_cols=128 Identities=26% Similarity=0.208 Sum_probs=111.4
Q ss_pred HHhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhc----HHHHHHHHHh---cCC--
Q 006654 333 AKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG----PALEVATAER---AKS-- 403 (636)
Q Consensus 333 ~~~~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG----~~l~~e~~~~---~~~-- 403 (636)
+..++.++++++|.+++||||++. +||||||||+.|. +||||++||+++|| ++|++||+++ .++
T Consensus 11 ~~~~~~~~~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~ 83 (211)
T 1vhu_A 11 EVLFEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDY 83 (211)
T ss_dssp EEEEEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSC
T ss_pred hhhhheeECCEEEEEEecccCcCC------CCEEEECCCcccc-CccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCc
Confidence 344567889999999999999997 9999999999999 89999999999999 9999999985 266
Q ss_pred CCCCcEEEecCCCCCCCCCCCCc---cEEEEecCC----CCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhh
Q 006654 404 LYPGNSVIVPLPSTSPLCGREGV---THVIHVLGP----NMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIV 471 (636)
Q Consensus 404 ~~~G~avvT~l~~~~~~~~~l~~---k~VIH~VgP----~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~sia 471 (636)
+++|++++|+ .+.|++ +||||+||| .|+. ...++|++||++||+.| .|||
T Consensus 84 ~~~G~a~iT~-------~~~L~~~g~k~VIH~vgP~~~~~~~~-----------~~~~~L~~~y~~~L~~A~~~~i~SIA 145 (211)
T 1vhu_A 84 IDHGEVVVTP-------AMNLEERGIKYVFHTVGPICSGMWSE-----------ELKEKLYKAFLGPLEKAEEMGVESIA 145 (211)
T ss_dssp CCTTCCEEEE-------CGGGGGGTCCEEEEEECCCCTTCCCH-----------HHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred ccCCcEEEEE-------CCCCCccCcCEEEEecCCccccccCc-----------chHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999 234666 999999999 8842 24789999999999986 4999
Q ss_pred ccccCCCCCCCcCc
Q 006654 472 RSQEKLSKGCNEDI 485 (636)
Q Consensus 472 f~~~~~~~~~~~~~ 485 (636)
||+||.+.+-.+.-
T Consensus 146 fP~IstG~~G~p~~ 159 (211)
T 1vhu_A 146 FPAVSAGIYGCDLE 159 (211)
T ss_dssp ECCTTSSTTCCCHH
T ss_pred eccccCCCCCCCHH
Confidence 99999887766643
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.88 E-value=2.5e-23 Score=214.69 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=107.4
Q ss_pred CeEEEEEEcccceec---ccCcc----cccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh--cCCCCCCcEEE
Q 006654 342 PKKFFTFVGDITRLY---TGGGL----CCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER--AKSLYPGNSVI 411 (636)
Q Consensus 342 ~~~v~v~~GDIt~~~---~~~~~----~~daIVNaaN~~L~~~ggGVa~AI~~aaG-~~l~~e~~~~--~~~~~~G~avv 411 (636)
..+|.+++||||++. .+|++ .+||||||||+.|. +||||++||+++|| +.|+++|+++ .+.+++|++++
T Consensus 44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~-~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~i 122 (284)
T 1njr_A 44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATV 122 (284)
T ss_dssp -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEE
T ss_pred CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCC-CCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEE
Confidence 468999999999991 12222 39999999999999 99999999999975 7889999986 37799999999
Q ss_pred ecCC---CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccchHHHHHHHHHHHHHh----HHHhhccccCCCCCCCc
Q 006654 412 VPLP---STSPLCGREGVTHVIHVLGPNMNPRR-PNCLDGDYVKGCEILRKAYTSLFEG----FLSIVRSQEKLSKGCNE 483 (636)
Q Consensus 412 T~l~---~~~~~~~~l~~k~VIH~VgP~~~~~~-~~~~~~~~~~~~~~L~~ay~~~L~~----a~siaf~~~~~~~~~~~ 483 (636)
|+.. ..+-....|+|+||||+|||.|.... .+. .+.+....++|++||++||+. ..|||||+||+|.+..+
T Consensus 123 T~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~-~~p~~~~~~~L~~~~~~~L~~ae~~i~SIAfPaIsTGv~G~P 201 (284)
T 1njr_A 123 VDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP-QNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVP 201 (284)
T ss_dssp EEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT-TCHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCSTTCCC
T ss_pred EECCcccccccchhcCCCCEEEEeCCCccCCCCCccc-ccccccHHHHHHHHHHHHHHHHHhCCCEEEECcccccCCCCC
Confidence 9921 00000127999999999999996541 000 000012468999999999986 47999999999988776
Q ss_pred Ccc
Q 006654 484 DIR 486 (636)
Q Consensus 484 ~~~ 486 (636)
.-+
T Consensus 202 ~~~ 204 (284)
T 1njr_A 202 PII 204 (284)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.87 E-value=7.7e-23 Score=221.69 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=98.0
Q ss_pred eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG 422 (636)
Q Consensus 343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~ 422 (636)
..+.|++||||+.. +||||||||..|. +||||++|||++||+++.. +.+++|+|++|+ ++.
T Consensus 344 PsfrIIRgDITk~~------vDAIVNAANtsL~-gGgGVdGAIhraaG~~ll~------~~~~tG~AkIT~------g~a 404 (670)
T 4gua_A 344 PSYRTKRENIADCQ------EEAVVNAANPLGR-PGEGVCRAIYKRWPTSFTD------SATETGTARMTV------CLG 404 (670)
T ss_dssp CCEEEECSCGGGCC------SSEEEEECCTTCC-CCSSHHHHHHHHCGGGGTT------CCCCTTCEEEEE------ETT
T ss_pred cceeEEeccccccc------cCEEEeCCCCCCC-CcCCHhHHHHHHhhHHHhc------CCCCcceEEEec------CCC
Confidence 47999999999998 9999999999999 8999999999999998876 569999999999 232
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCc
Q 006654 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNE 483 (636)
Q Consensus 423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~ 483 (636)
+||||+|||+|++... .+..++|++||+++|++| .|||||.|++|.+..+
T Consensus 405 ----KyIIHtVGPvw~~g~~-------~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~P 459 (670)
T 4gua_A 405 ----KKVIHAVGPDFRKHPE-------AEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAG 459 (670)
T ss_dssp ----EEEEEECCCCTTSSCH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTT
T ss_pred ----ceEEEcCCCCccCCCC-------chHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCC
Confidence 9999999999987642 234579999999999987 4999999999988776
No 20
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.74 E-value=3.5e-18 Score=162.90 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=94.4
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCC
Q 006654 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (636)
Q Consensus 341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~ 420 (636)
++.+|++++||||+.. .+|||||+||..|. +||||++||++++|. + .+|.+ +.+++|++++|+.
T Consensus 18 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~GgGVa~ai~~~~p~-~-~e~~~--~~~~~G~a~it~~------ 81 (160)
T 2jyc_A 18 EGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFGG-V-QELLN--QQKKSGEVAVLKR------ 81 (160)
T ss_dssp CSCSEEEEESCSSSSC-----SSCEEEEEECTTCC-CCSSTHHHHHHHHCC-H-HHHHH--HCCCTTCEEEEEE------
T ss_pred CCceEEEEeCcCCCCC-----CCCEEEEccCCcCC-CCCcHHHHHHHHChH-H-HHHhc--cCCCCCcEEEEec------
Confidence 4678999999999975 25999999999999 999999999999955 4 57766 5799999999982
Q ss_pred CCCCCccEEEEecCCC-CCCCCCCCCCCCccchHHHHHHHHHHHHHhHH-----HhhccccCCCCCCCc
Q 006654 421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLSKGCNE 483 (636)
Q Consensus 421 ~~~l~~k~VIH~VgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~~~~~~~~ 483 (636)
+.++|||+|||. |.. .+ ..+.|++||+++|+.+. |||||+||.+.+-.+
T Consensus 82 ----~~~~Vih~vg~~~~~~-~~---------~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p 136 (160)
T 2jyc_A 82 ----DGRYIYYLITKKRASH-KP---------TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQ 136 (160)
T ss_dssp ----TTEEEEEEECSSSTTS-CC---------CHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSC
T ss_pred ----CCcEEEEEecCCCCCC-CC---------hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC
Confidence 238999999998 643 32 26899999999999864 999999998865443
No 21
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.73 E-value=3.5e-18 Score=161.09 Aligned_cols=113 Identities=11% Similarity=0.108 Sum_probs=93.8
Q ss_pred CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCC
Q 006654 341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL 420 (636)
Q Consensus 341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~ 420 (636)
++.+|++++||||+.. .+|+|||+||..|. +||||++||++++| ++ .+|.+ +.+++|++++|+.
T Consensus 7 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~G~Gva~ai~~~~p-~~-~~~~~--~~~~~G~a~it~~------ 70 (149)
T 2eee_A 7 GGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFG-GV-QELLN--QQKKSGEVAVLKR------ 70 (149)
T ss_dssp SSCCCEEECSCSSSSC-----SSCEEEEEEETTCC-CCSTTHHHHHHHTC-CH-HHHHT--TCCCTTCEEEEES------
T ss_pred CCeeEEEEecccccCC-----CCcEEEEEeCCCCC-cCCcHHHHHHHHCc-HH-HHHhc--ccCCCccEEEEEc------
Confidence 4578999999999985 26999999999999 99999999999995 45 56765 6799999999983
Q ss_pred CCCCCccEEEEecCCC-CCCCCCCCCCCCccchHHHHHHHHHHHHHhHH-----HhhccccCCCCCCCc
Q 006654 421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLSKGCNE 483 (636)
Q Consensus 421 ~~~l~~k~VIH~VgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~~~~~~~~ 483 (636)
+.++|||++||. |.. .+ ..+.|++||+++|+.+. |||||+||.+.+-.+
T Consensus 71 ----~~~~Vih~v~~~~~~~-~~---------~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~ 125 (149)
T 2eee_A 71 ----DGRYIYYLITKKRASH-KP---------TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQ 125 (149)
T ss_dssp ----SSSEEEEEEEESSTTS-CC---------CHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCC
T ss_pred ----CCCEEEEEEecCCCCC-CC---------CHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC
Confidence 238999999998 644 32 26899999999999764 999999998865443
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.70 E-value=1.8e-17 Score=157.63 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=94.9
Q ss_pred CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecCCCCC
Q 006654 342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS 418 (636)
Q Consensus 342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l~~~~ 418 (636)
.+.|++++||||+.. ...+|+|||+||..+. +||||++||++++ |++++++++. .+.+++|++++|+.
T Consensus 3 ~M~i~~v~GDit~~~---~~~~daIvn~~N~~~~-~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~---- 73 (158)
T 2fg1_A 3 AMEILYIKGDATAPI---GSGVKVITHICNDIGG-WGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNV---- 73 (158)
T ss_dssp CCCCEEEESCTTSCC---SSSCEEEEEEEETTCC-CCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEE----
T ss_pred ceEEEEEecccCCCC---CCCCeEEEEEecCCCC-cCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEec----
Confidence 357899999999931 0127999999999999 9999999999999 6777776653 25799999999982
Q ss_pred CCCCCCCccEEEEecCCC-CCCCCCCCCCCCccchHHHHHHHHHHHHHhHH----HhhccccCCCCCCC
Q 006654 419 PLCGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL----SIVRSQEKLSKGCN 482 (636)
Q Consensus 419 ~~~~~l~~k~VIH~VgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~----siaf~~~~~~~~~~ 482 (636)
++ .++|||++||. |...... ......+.|++||+++++.+. |||||.||.+.+-.
T Consensus 74 --~~---~~~Vi~~v~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~a~~~~~sIa~P~Ig~G~~G~ 133 (158)
T 2fg1_A 74 --EN---KLYVANMIGQHGIYKDSKG----LPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCGLAGG 133 (158)
T ss_dssp --ET---TEEEEEEEEESSSSCCTTC----CCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCSTTCC
T ss_pred --CC---CeEEEEEEEEcccCCCCCC----CccccHHHHHHHHHHHHHHHHHhCCeEEecCcCCCCCCC
Confidence 11 28999999999 7533210 011247899999999999875 99999999775443
No 23
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.70 E-value=7e-17 Score=176.06 Aligned_cols=141 Identities=23% Similarity=0.336 Sum_probs=125.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF 96 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l 96 (636)
.++|.+|+|+|+|||||||+|++|++.++ +.+|+.|.++ .+..+...+.+.+..|..||+|++|+...+|..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~ 327 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLG-----SWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARY 327 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGSC-----SHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC--cEEEccchHH-----HHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 45688999999999999999999999988 8899999983 5666778888999999999999999999999999
Q ss_pred HHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCC
Q 006654 97 VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN 165 (636)
Q Consensus 97 ~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~ 165 (636)
.++ +..++.+.+|+|++|.++|.+|+..|..+.. ....++++++++|.+.|++|...|+|+.|+.++-
T Consensus 328 ~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 328 IQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDP-SHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp HHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCT-TCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECC
T ss_pred HHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCC-CcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEec
Confidence 999 8888888999999999999999999987533 2346889999999999999999999999988764
No 24
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.67 E-value=1.2e-16 Score=151.51 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=103.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHH-HcCCCeEEeehhhhcCCC----------CCcH------HHHHHHHHHHH---hCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMR-SSARPWARICQDTINKGK----------SGTK------VQCLTSASSAL---KKG 78 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak-~~~~~~~~Is~D~ir~~~----------~~~~------~~~~~~~~~~L---~~G 78 (636)
||.+|+|+|+|||||||+|+.|++ .++ +.+++.|.++... .... ..+...+...+ ..|
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 578999999999999999999998 565 8889998885321 1111 11235566777 789
Q ss_pred CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 006654 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE 155 (636)
Q Consensus 79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~E 155 (636)
..||+|++++...+|..|.++ ...++.+.+|+|++|.++|.+|+..|..+ .++.+.+.++++.|+.|...+
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~ 150 (181)
T 1ly1_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLP 150 (181)
T ss_dssp CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC------CCCHHHHHHHHHHhhccCCCC
Confidence 999999999999999999888 66777778899999999999999999864 467889999999988875433
No 25
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.58 E-value=8.5e-15 Score=151.34 Aligned_cols=180 Identities=19% Similarity=0.253 Sum_probs=123.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCC-------C---CCc-H-----HHHHHHHHHHH---hCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKG-------K---SGT-K-----VQCLTSASSAL---KKG 78 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~-------~---~~~-~-----~~~~~~~~~~L---~~G 78 (636)
||.+|+|+|+|||||||+|+.|++.+ + +.+++.|.++.. + ... . ..+...+...+ ..|
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 57899999999999999999999875 5 788999987532 1 111 0 11235566777 788
Q ss_pred CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCc
Q 006654 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF 157 (636)
Q Consensus 79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egf 157 (636)
..||+|++++...+|..|.++ ...++.+.+|+|++|.+++.+|+..|..| .++.+.++++++.|+.+...+.|
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~e~i~~~~~~~~~~~~~~~~ 152 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLPVY 152 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG------CCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHHhcccCCcce
Confidence 999999999999999999888 77788888999999999999999999875 46788999998888765432211
Q ss_pred ------cEEEEeCChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcCCCC
Q 006654 158 ------SRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPS 214 (636)
Q Consensus 158 ------d~Viii~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g~~~ 214 (636)
....+++.+..... .....|+++.+ |... .+-.-+ .++.+.|++.|+.-
T Consensus 153 ~~~~~~~~~i~iD~dgtl~~----~~~~~~~~~~~--~~~~-~~~~g~-~e~L~~L~~~g~~~ 207 (301)
T 1ltq_A 153 NGTPGKPKAVIFDVDGTLAK----MNGRGPYDLEK--CDTD-VINPMV-VELSKMYALMGYQI 207 (301)
T ss_dssp CCCTTSCEEEEEETBTTTBC----CSSCCTTCGGG--GGGC-CBCHHH-HHHHHHHHHTTCEE
T ss_pred eccccccceEEEeCCCCccc----ccCCCchhhhh--cccc-CCChHH-HHHHHHHHHCCCeE
Confidence 12333333222211 12234554443 4432 333333 46667777777754
No 26
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.55 E-value=5.2e-14 Score=140.54 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=107.7
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHH
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSAL 75 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L 75 (636)
+...+|.+|+|+|||||||||+|+.|++.++ +.||++ |.+|.. ...+.+.+...+.++|
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g--~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l 101 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH--FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 101 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC--CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4456788999999999999999999999999 889997 555532 1123334445555555
Q ss_pred h----CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 006654 76 K----KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL 150 (636)
Q Consensus 76 ~----~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~ 150 (636)
. ..++||+|+++++..|...|... .... .+++|++|++++.+|+..|....+ +.++ .++++++-.+.|.
T Consensus 102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~---~vi~l~v~~e~~~~Rl~~R~~~~~-R~DD-~~e~i~~Rl~~Y~- 175 (217)
T 3umf_A 102 IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL---CVINFDVSEEVMRKRLLKRAETSN-RVDD-NEETIVKRFRTFN- 175 (217)
T ss_dssp HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHSCC-------CHH-HHHHHHHHHHHHH-
T ss_pred hhccccccCcccccCCCcHHHHHHHHHhCCccC---EEEeccCCHHHHHHHHhcccccCC-CCCC-CHHHHHHHHHHHH-
Confidence 2 45689999999999999988776 5444 488999999999999999975332 2222 2333333222221
Q ss_pred CCccCCccEEEEeCChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcCC
Q 006654 151 PKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDA 212 (636)
Q Consensus 151 P~~~Egfd~Viii~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g~ 212 (636)
++...+++-|...|-+ +.+.++ .....|+.+|.+.|++.|.
T Consensus 176 ----------------~~t~pl~~~Y~~~~~l----~~Idg~-~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 176 ----------------ELTKPVIEHYKQQNKV----ITIDAS-GTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp ----------------HHTHHHHHHHHTTTCE----EEEETT-SCHHHHHHHHHHHHHTTTC
T ss_pred ----------------HHHHHHHHHHHhcCCE----EEEECC-CCHHHHHHHHHHHHHHcCC
Confidence 1112233334443433 123334 5667777888888877653
No 27
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.54 E-value=8.7e-14 Score=141.86 Aligned_cols=127 Identities=24% Similarity=0.311 Sum_probs=100.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCCC---cHH-----HHHHHHHHHHhCCCeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSG---TKV-----QCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~~---~~~-----~~~~~~~~~L~~G~~VIID~tn 87 (636)
++.+|+|+|+|||||||+|+.|++. .+..+.+++.|.++....+ ... .....+...+.. ..||+|+++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~ 81 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTN 81 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCc
Confidence 4678999999999999999999987 5644555699998754322 111 122445566666 889999999
Q ss_pred CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc
Q 006654 88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL 153 (636)
Q Consensus 88 ~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~ 153 (636)
+....|..|..+ ...+.+..+|+|++|.++|.+|+..|.. ..+.+.++++...|+.|..
T Consensus 82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-------~~~~~~l~~~~~~~e~~~~ 141 (260)
T 3a4m_A 82 YYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-------KIPNEVIKKMYEKFDEPGK 141 (260)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-------SSCHHHHHHHHHHCCCTTS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHhcCccc
Confidence 999999999888 7777788899999999999999999863 3567889999999988764
No 28
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.53 E-value=4.1e-14 Score=140.14 Aligned_cols=172 Identities=15% Similarity=0.259 Sum_probs=119.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcC------------------CCCCcHHHHHHHHHHHHhCCCeEE
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKKGKSVF 82 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~------------------~~~~~~~~~~~~~~~~L~~G~~VI 82 (636)
+|+|.|||||||||+|+.|+++++ +.||++ |.+|+ +...+.+.+...+.++|....+||
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~i 79 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVI 79 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceE
Confidence 588999999999999999999999 889997 55542 222244556678888888888899
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEE
Q 006654 83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI 160 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~V 160 (636)
+|+++++..|...|..+ ...+..+ .+++|++|.+++.+|+..|..++.. .+.++..+.+|...+.
T Consensus 80 lDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~---------g~~y~~~~~pp~~g~~---- 146 (206)
T 3sr0_A 80 FDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPET---------GEVYHVKYNPPPPGVK---- 146 (206)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTT---------CCEEETTTBCCCTTCC----
T ss_pred ecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCC---------CceeeeeccCCCCCce----
Confidence 99999999999998777 5555555 6889999999999999999876432 1112334555542211
Q ss_pred EEeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHHhh
Q 006654 161 TLCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFLKK 209 (636)
Q Consensus 161 iii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l~~ 209 (636)
...+.++..+.+.++ |+ ...|+ + ..+ +...++ .....|+.+|.+.|..
T Consensus 147 l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~-~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 147 VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDAS-KPVEEVYRQVLEVIGD 204 (206)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETT-SCHHHHHHHHHHHHC-
T ss_pred ecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHcc
Confidence 133455555555554 32 33443 1 112 334445 6778888999988853
No 29
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=99.46 E-value=1.2e-14 Score=145.05 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=103.1
Q ss_pred HHHHHHHHhc-cCCCCcccCCCccCCCCCchhhHHHHHHHHhhcC--CCCCCCCCCcccCCCCCCcccccccccccCcce
Q 006654 168 DVQAALDTYS-GLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD--APSNTGSTASSTQDPVPPQITEEKNSCLEGQEI 244 (636)
Q Consensus 168 ~vdaiv~~~~-~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (636)
++|+++++.+ .|. .++|+.+. +++.++|.+|++.+++.+ ...++|. ++ .|.++++.|.++-|.
T Consensus 52 ~vDAIVNaAN~~l~----~~gGGV~~-AI~~aaG~~L~~ec~~~~~~~~~~~G~-a~--------iT~g~~Lp~k~VIHt 117 (221)
T 3q71_A 52 KTDVVVNSVPLDLV----LSRGPLSK-SLLEKAGPELQEELDTVGQGVAVSMGT-VL--------KTSSWNLDCRYVLHV 117 (221)
T ss_dssp CSSEEEEECCTTCC----TTSSHHHH-HHHHHHCTHHHHHHHHHHHTSCCCTTC-EE--------EEECTTSSSSEEEEE
T ss_pred cCCEEEECCCCCCC----CCCchHHH-HHHHHHhHHHHHHHHHHhccCCCCCCe-EE--------EEcCCCCCCCEEEEe
Confidence 4566665532 221 12467777 899999999998887753 2445664 22 356678888899998
Q ss_pred ecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654 245 TSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (636)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (636)
+-|.|........+.|..||.+||.+|++++++|||||+||||+||||.++||+|++++|++|+++++
T Consensus 118 VgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~ 185 (221)
T 3q71_A 118 VAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQ 185 (221)
T ss_dssp CCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 88888754444567899999999999999999999999999999999999999999999999999873
No 30
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.44 E-value=1.8e-12 Score=126.17 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=95.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CCCc---HHHHHHHHHHHHhCCCeEEEeC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQCLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~~~---~~~~~~~~~~~L~~G~~VIID~ 85 (636)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+... .... ....+..+...+..|..+|+|+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~ 93 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG--YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSC 93 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT--CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEEC
Confidence 4567899999999999999999999998 667888887421 1111 1123455566667888999999
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 006654 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK 152 (636)
Q Consensus 86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~ 152 (636)
+++....|..+..+. +.+..+|+|++|.+++.+|+..|..+ ..+.+.++++.+.++++.
T Consensus 94 ~~~~~~~~~~l~~~~--~~~~~vi~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~~~~~ 152 (202)
T 3t61_A 94 SALKRSYRDKLRESA--PGGLAFVFLHGSESVLAERMHHRTGH------FMPSSLLQTQLETLEDPR 152 (202)
T ss_dssp CCCSHHHHHHHHHTS--TTCCEEEEEECCHHHHHHHHHHHHSS------CCCHHHHHHHHHHCCCCT
T ss_pred CCCCHHHHHHHHHhc--CCCeEEEEEeCCHHHHHHHHHHhhcc------CCCHHHHHHHHHhcCCCC
Confidence 999888888776652 22346889999999999999999764 234788888888887764
No 31
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.37 E-value=4.2e-12 Score=131.61 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=104.4
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC---------c--------H-HH-HHHHHHHHHhC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--------K-VQ-CLTSASSALKK 77 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~---------~--------~-~~-~~~~~~~~L~~ 77 (636)
..+|.+|+|+|+|||||||+|+.|++.++..+.+|+.|.++....+ . + .. ....+.+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~ 109 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ 109 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999988544788999988754321 0 0 01 12445667788
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHH----HHHHHhcccccCCCCCCChHHHHH----HHHhhh
Q 006654 78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLC----ISRSVKRIEHEGNLQGGKAAAVVN----RMLQKK 148 (636)
Q Consensus 78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l----~~R~~~R~~~~~~~~~~vp~evi~----rm~~~f 148 (636)
|.+||+|+++....++..+.++ ++.|+.+.+++|.+|.+++ .+|+..|..+.+.....++.+... ++...+
T Consensus 110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~ 189 (287)
T 1gvn_B 110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNL 189 (287)
T ss_dssp TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999988888888888 8888888889999999999 888887765432111245444443 333333
Q ss_pred cCCCccCCccEEEEeCC
Q 006654 149 ELPKLSEGFSRITLCQN 165 (636)
Q Consensus 149 e~P~~~Egfd~Viii~~ 165 (636)
++......|+.+++.+.
T Consensus 190 ~el~~~~~~d~v~v~d~ 206 (287)
T 1gvn_B 190 ETLHKTGLFSDIRLYNR 206 (287)
T ss_dssp HHHHHHTCCSCEEEECT
T ss_pred HHHHcCCCCCeEEEEeC
Confidence 32222344677766654
No 32
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.37 E-value=2.6e-11 Score=115.00 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=86.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------CCCCcH-------HHHHHHHHHHHhCCCeEE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK-------VQCLTSASSALKKGKSVF 82 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~~~~~~-------~~~~~~~~~~L~~G~~VI 82 (636)
+..+|+|+|+|||||||+++.|+..++ +.+++.|.+.. +..... ..+...+...+..|..+|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 84 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSL 84 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEE
Confidence 457899999999999999999999887 77889888742 111111 112233444556688999
Q ss_pred EeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654 83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P 151 (636)
+|...+....|..+ ++.+..+.+|+|++|.+++.+|+..|..+. .....+..+...+++|
T Consensus 85 i~~~~~~~~~~~~l---~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~------~~~~~~~~~~~~~~~~ 144 (175)
T 1knq_A 85 IVCSALKKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGHF------FKTQMLVTQFETLQEP 144 (175)
T ss_dssp EECCCCSHHHHHHH---HTTCTTEEEEEEECCHHHHHHHHHTSTTCC------CCHHHHHHHHHHCCCC
T ss_pred EEeCchHHHHHHHH---HhcCCCEEEEEEECCHHHHHHHHHhccCCC------CchHHHHHHHHhhhCc
Confidence 99877777666555 333345678999999999999999997542 2355666666666665
No 33
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.37 E-value=2.7e-12 Score=123.04 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=78.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC------CCC-cHH---------HHHHHHHHHHhCCCeE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKV---------QCLTSASSALKKGKSV 81 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~------~~~-~~~---------~~~~~~~~~L~~G~~V 81 (636)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.++.. ... .+. .+...+...+..|..|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 80 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR--LPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL 80 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC--CeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678999999999999999999999988 567888887532 111 111 1113345567789999
Q ss_pred EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
|+|+++.....+..|..+ ...+.+..+|+|++|.+++.+|+..|..
T Consensus 81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 999988322233456556 4455667889999999999999999875
No 34
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.36 E-value=8.9e-12 Score=119.21 Aligned_cols=107 Identities=18% Similarity=0.349 Sum_probs=76.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------------CCCcHHHH----HHHHH--
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------------KSGTKVQC----LTSAS-- 72 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------------~~~~~~~~----~~~~~-- 72 (636)
+|.+|+|+|+|||||||+|+.|++.++ +.+++.|.+... ........ ...+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 79 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQT 79 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhh
Confidence 467899999999999999999999998 677888765211 11111111 11111
Q ss_pred -HHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 73 -SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 73 -~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+..+..||+|+++++..++..|... ......-.+|+|++|.+++.+|+..|..
T Consensus 80 ~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 80 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 223357889999999999988888766 4432223688999999999999999865
No 35
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.35 E-value=1.4e-11 Score=117.58 Aligned_cols=126 Identities=20% Similarity=0.353 Sum_probs=85.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-------------------CCCcHHHHHHHHHHHHh--
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KSGTKVQCLTSASSALK-- 76 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-------------------~~~~~~~~~~~~~~~L~-- 76 (636)
.|+.+|+|+|+|||||||+|+.|++.++ +.+++.|.+... ...........+.+.+.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 81 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN 81 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhC--CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999988 778888665211 00111222233334443
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 77 ~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
.+..+|+|+++....++..|... ......-.+|+|++|.+++.+|+..|..... +.+...+.+.+++..
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~-r~~~~~~~~~~ri~~ 151 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG-RSDDNIESIKKRFNT 151 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC-CTTCSHHHHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCC-CCCCCHHHHHHHHHH
Confidence 56789999999998888888766 4322223588999999999999999865322 222334455444443
No 36
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.35 E-value=5.5e-12 Score=127.30 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=84.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK 77 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~ 77 (636)
..+|.+|+|.|+|||||||+|+.|++.++ +.+++.|.+ +. +...........+...+..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~ 103 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC--YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKT 103 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Confidence 45788999999999999999999999998 778887554 22 1122333344556666654
Q ss_pred ---CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654 78 ---GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 78 ---G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
+..+|+|+++.+..+...|..+ ...+..+ .+++|++|.+++++|+..|..++
T Consensus 104 ~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~ 160 (243)
T 3tlx_A 104 PQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHK 160 (243)
T ss_dssp GGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCc
Confidence 7789999999999888888776 4444333 68899999999999999998654
No 37
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=99.35 E-value=2.3e-13 Score=132.56 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=91.7
Q ss_pred CccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChh
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPE 263 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (636)
|+.+. +++..+|.+|.+-+++. | ..++|. ++ .|.+.++.|.++-|.+-+.|...+....+.|..|
T Consensus 32 gGv~~-aI~~aaG~~l~~e~~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~ 100 (184)
T 1spv_A 32 GGVDG-AIHRAAGPALLDACLKVRQQQG-DCPTGH-AV--------ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDA 100 (184)
T ss_dssp SHHHH-HHHHHHCHHHHHHHHHHHHHHC-SCCTTC-EE--------EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHH
T ss_pred chHHH-HHHHHhCHHHHHHHHHHHHhcC-CCCCCC-EE--------EeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHH
Confidence 55656 88999999998777654 4 445664 11 2445566777788877777754334456788999
Q ss_pred hhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654 264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN 313 (636)
Q Consensus 264 ~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~ 313 (636)
|.+||.+|.+++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus 101 y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~ 150 (184)
T 1spv_A 101 YLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHAL 150 (184)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999998754
No 38
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.34 E-value=2.4e-11 Score=115.24 Aligned_cols=108 Identities=17% Similarity=0.267 Sum_probs=78.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC--------------------C-cHHHH----HHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------------------G-TKVQC----LTSASS 73 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~--------------------~-~~~~~----~~~~~~ 73 (636)
++.+|+|+|+|||||||+|+.|++.++.++.+++.|.++.... . .+... ...+..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 4578999999999999999999999987777778876632100 0 01121 233556
Q ss_pred HHhCCCeEEEeCCCCC-HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 74 ALKKGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 74 ~L~~G~~VIID~tn~~-~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.+..|..||+|+..+. ...+..+.++ ... .+.+|+|++|.+++.+|+..|..+
T Consensus 82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~~~e~l~~R~~~r~~~ 136 (178)
T 1qhx_A 82 MARAGARIIIDDVFLGGAAAQERWRSFVGDL--DVLWVGVRCDGAVAEGRETARGDR 136 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHHHHHHHHHTTC--CEEEEEEECCHHHHHHHHHHTSSS
T ss_pred HHhcCCeEEEEeccccChHHHHHHHHHhcCC--cEEEEEEECCHHHHHHHHHhhCCc
Confidence 6678889999997753 4556666666 543 456788999999999999998654
No 39
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.34 E-value=4.7e-12 Score=128.38 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=89.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC---------CCc---------HHHH-HHHHHHHHh
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SGT---------KVQC-LTSASSALK 76 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~---------~~~---------~~~~-~~~~~~~L~ 76 (636)
...+|.+|+|+|+|||||||+|+.|++.++..+.+++.|.++... .+. .... ...+...+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS 107 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence 345688999999999999999999999987557789999986531 111 1111 234445567
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 77 ~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.|.+||+|+++....++..+.++ +..++.+.++++++|.++|.+|+..|...
T Consensus 108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~ 160 (253)
T 2p5t_B 108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYEE 160 (253)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHH
Confidence 78899999999888888888888 88888888889999999999999988653
No 40
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=99.33 E-value=3.7e-13 Score=131.98 Aligned_cols=113 Identities=9% Similarity=0.134 Sum_probs=92.9
Q ss_pred CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654 187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP 262 (636)
Q Consensus 187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (636)
+|+.+. +++.++|.+|++-+++. | .-++|. ++ .|.+.++.|.++-|.+-+.|.. ....+.|..
T Consensus 50 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~ 116 (193)
T 2xd7_A 50 KEDIGK-ALEKAGGKEFLETVKELRKSQG-PLEVAE-AA--------VSQSSGLAAKFVIHCHIPQWGS--DKCEEQLEE 116 (193)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHHHHHTC-SCCTTC-EE--------EEECTTSSSSEEEEEECCCTTS--TTHHHHHHH
T ss_pred ccHHHH-HHHHHhhHHHHHHHHHHHHHcC-CCCCCC-eE--------EeeCCCCCCCEEEEECCCcCCC--cchHHHHHH
Confidence 567767 89999999999777653 3 345554 22 2455677788888888888864 455678899
Q ss_pred hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654 263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (636)
Q Consensus 263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (636)
||.+||.+|.+++++|||||+||||+||||.++||+++++++++|+++++
T Consensus 117 ~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~ 166 (193)
T 2xd7_A 117 TIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSS 166 (193)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998853
No 41
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=99.31 E-value=2.4e-13 Score=135.28 Aligned_cols=129 Identities=10% Similarity=-0.000 Sum_probs=99.5
Q ss_pred HHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcc
Q 006654 168 DVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE 243 (636)
Q Consensus 168 ~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (636)
++|++++..+..+ .+.|+.+. +++.++|.+|++.+++. | .-++|. ++ .|.++++.|.++-|
T Consensus 50 ~vDaIVNaAN~~l----~~ggGV~~-AI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH 114 (214)
T 3q6z_A 50 PVDVVVNASNEDL----KHYGGLAA-ALSKAAGPELQADCDQIVKREG-RLLPGN-AT--------ISKAGKLPYHHVIH 114 (214)
T ss_dssp SSSEEEEEECTTC----CCCSHHHH-HHHHHHCTHHHHHHHHHHHHHC-CCCTTC-EE--------EEECTTSSSSEEEE
T ss_pred cCCEEEeCCCCCC----CCCchHHH-HHHHhhhHHHHHHHHHHHHHcC-CCCCCe-EE--------EEcCCCCCCCEEEE
Confidence 5666666533111 12467767 89999999999776653 3 334554 22 25567788888889
Q ss_pred eecccccccc-hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 006654 244 ITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL 311 (636)
Q Consensus 244 ~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~ 311 (636)
.+-|.|.... .+..+.|..||.+||.+|++++++|||||+||||+||||.++||+++++++++|++++
T Consensus 115 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~ 183 (214)
T 3q6z_A 115 AVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK 183 (214)
T ss_dssp EECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred ecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8888887532 2346789999999999999999999999999999999999999999999999999876
No 42
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=99.30 E-value=4.7e-13 Score=131.25 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=91.5
Q ss_pred CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654 187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP 262 (636)
Q Consensus 187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (636)
+|+.+. +++.++|.+|++-+++. | .-++|. ++ .|.+.++.|.++-|.+-|.|.. ....+.|..
T Consensus 47 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~ 113 (193)
T 1yd9_A 47 GGEVGS-TLEKKGGKEFVEAVLELRKKNG-PLEVAG-AA--------VSAGHGLPAKFVIHCNSPVWGS--DKCEELLEK 113 (193)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHHHHHHC-SCCTTC-EE--------EEECTTSSSSEEEEECCCCTTS--TTHHHHHHH
T ss_pred CchHHH-HHHHHhhHHHHHHHHHHHHHcC-CCCCCC-EE--------EecCCCCCCCEEEEeCCCCcCC--cchHHHHHH
Confidence 467777 89999999999777653 3 334554 22 2455677778888887777764 555678899
Q ss_pred hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 006654 263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL 311 (636)
Q Consensus 263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~ 311 (636)
||.+||.+|++++++|||||+||||+||||.++||+++++++++|++++
T Consensus 114 ~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~ 162 (193)
T 1yd9_A 114 TVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVST 162 (193)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999875
No 43
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=99.29 E-value=5.1e-13 Score=129.85 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=85.0
Q ss_pred CCccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhh
Q 006654 187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVAS 266 (636)
Q Consensus 187 hgc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s 266 (636)
+|+.+. +++.++|.+|++-+++.+. .++|. ++ .|.++++.|.++-|.+-+.+ |..||.+
T Consensus 50 ggGV~~-aI~~aaG~~l~~ec~~~~~-~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~----------L~~~y~~ 108 (183)
T 4abl_A 50 KAGVSK-AILECAGQNVERECSQQAQ-QRKND-YI--------ITGGGFLRCKNIIHVIGGND----------VKSSVSS 108 (183)
T ss_dssp CSTHHH-HHHHHHCHHHHHHHHHHHH-HSCCS-EE--------EEECTTSBSSEEEEEETTSC----------HHHHHHH
T ss_pred CccHHH-HHHHHhhHHHHHHHHHhcC-CCCCc-eE--------EecCCCCCCCEEEEeCcHHH----------HHHHHHH
Confidence 456666 8999999999988877642 34443 11 24556677777777654422 8889999
Q ss_pred hhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654 267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (636)
Q Consensus 267 ~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (636)
||.+|++++++|||||+||||+||||.++||+++++++++|+++++
T Consensus 109 ~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~ 154 (183)
T 4abl_A 109 VLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGS 154 (183)
T ss_dssp HHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999874
No 44
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.29 E-value=6e-11 Score=115.55 Aligned_cols=126 Identities=22% Similarity=0.201 Sum_probs=89.6
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------CCCCcH-------HHHHHHHHHHHhCCC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK-------VQCLTSASSALKKGK 79 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~~~~~~-------~~~~~~~~~~L~~G~ 79 (636)
...++.+|+|+|+|||||||+++.|+..+| +.+++.|.+.. +..... ..+...+...+..|.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 102 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGV 102 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCC
Confidence 344567999999999999999999999887 77888887642 111111 112244555667888
Q ss_pred eEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 006654 80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK 152 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~ 152 (636)
.+|+|...+....|..+.++ ...+.+|+|++|.+++.+|+..|..+. .+.+.++.+++.++++.
T Consensus 103 ~viid~~~~~~~~~~~l~~~---~~~~~vv~l~~~~e~l~~Rl~~R~~~~------~~~~~l~~~~~~~~~~~ 166 (200)
T 4eun_A 103 STIITCSALKRTYRDVLREG---PPSVDFLHLDGPAEVIKGRMSKREGHF------MPASLLQSQLATLEALE 166 (200)
T ss_dssp CEEEEECCCCHHHHHHHTTS---SSCCEEEEEECCHHHHHHHHTTCSCCS------SCGGGHHHHHHHCCCCC
T ss_pred CEEEEchhhhHHHHHHHHHh---CCceEEEEEeCCHHHHHHHHHhcccCC------CCHHHHHHHHHHhCCCC
Confidence 99999988887777766433 224468899999999999999987642 23566777777776554
No 45
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=99.28 E-value=4.8e-13 Score=134.96 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=92.7
Q ss_pred CccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccc-cchhhcccCChhhhh
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEVAS 266 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~s 266 (636)
|+.+. ++|.++|.+|.+-+++.|. -++|. ++ .|.+.++.|.++-|.+-+.+.. ......+.|..||.+
T Consensus 91 gGV~~-AI~~aaG~~l~~ec~~~g~-~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~ 159 (235)
T 2x47_A 91 GGVDG-CIHRAAGPLLTDECRTLQS-CKTGK-AK--------ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLS 159 (235)
T ss_dssp SHHHH-HHHHHHCHHHHHHHHTSCC-CCBTC-EE--------EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHhCHHHHHHHHHhCC-CCCCc-eE--------EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHH
Confidence 56666 8999999999988877543 35554 11 2455667777888877777642 235567889999999
Q ss_pred hhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654 267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN 313 (636)
Q Consensus 267 ~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~ 313 (636)
||.+|.+++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus 160 ~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~ 206 (235)
T 2x47_A 160 SLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKD 206 (235)
T ss_dssp HHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999987643
No 46
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.27 E-value=2.6e-11 Score=119.62 Aligned_cols=108 Identities=18% Similarity=0.264 Sum_probs=77.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHh---
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--- 76 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~--- 76 (636)
++.+|+|+|+|||||||+|+.|++.++ +.+++.|++ +. +...........+...+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 80 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP 80 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc
Confidence 456899999999999999999999998 677887554 21 111122233344445554
Q ss_pred -CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 006654 77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 77 -~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.|.+||+|+++.+..++..|..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~ 135 (220)
T 1aky_A 81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIH 135 (220)
T ss_dssp GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCcc
Confidence 46789999988888777766554 4333333 5899999999999999998754
No 47
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.27 E-value=2e-11 Score=120.56 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=76.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-------------------CCCcHHHHHHHHHHHHhC---
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KSGTKVQCLTSASSALKK--- 77 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-------------------~~~~~~~~~~~~~~~L~~--- 77 (636)
+..|+|+|+|||||||+|+.|++.++ +.+++.|.+... ...........+..+|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 82 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG--LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC 82 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 45789999999999999999999998 778888655211 111122233444555544
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 006654 78 GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 78 G~~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
|..||+|+++.+..+...+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 135 (217)
T 3be4_A 83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTH 135 (217)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence 7889999988887777666543 33332 225899999999999999998754
No 48
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.26 E-value=5.1e-11 Score=114.43 Aligned_cols=105 Identities=23% Similarity=0.378 Sum_probs=76.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHH----HHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQ----CLTSASSA 74 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~----~~~~~~~~ 74 (636)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +....... +...+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~ 84 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAK 84 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999998 66788766421 11111211 12333444
Q ss_pred HhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 75 L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+..|..||+|+++....++..|... ...+ .+|+|++|.+++.+|+..|..
T Consensus 85 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 85 VNTSKGFLIDGYPREVQQGEEFERRIGQPT---LLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp TTTCSCEEEESCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHT
T ss_pred cccCCcEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHccCC
Confidence 5678899999988888877776555 4333 488999999999999998864
No 49
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.26 E-value=2.1e-11 Score=113.91 Aligned_cols=116 Identities=19% Similarity=0.331 Sum_probs=80.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------CCc-------------HHHHHHHHHHHH--hCC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------SGT-------------KVQCLTSASSAL--KKG 78 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------~~~-------------~~~~~~~~~~~L--~~G 78 (636)
.+|+|+|+|||||||+|+.| +.++ +.+++.|++.... ... .......+...+ ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999 8888 6677765442110 000 001224455666 567
Q ss_pred CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
..||+|+. +...++..+... . .+..+|+|++|.+++.+|+..|.... .....+++.+++..
T Consensus 79 ~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~---~~~~~~~~~~r~~~ 140 (179)
T 3lw7_A 79 DLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD---DSKEISELIRRDRE 140 (179)
T ss_dssp SCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-------CCCHHHHHHHHHH
T ss_pred CeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Confidence 78999997 888888888776 4 34578999999999999999996531 12455666666644
No 50
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.25 E-value=1.8e-11 Score=120.23 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=80.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~---G~ 79 (636)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+ +. +...........+...+.. +.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG--IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS--CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccC
Confidence 478999999999999999999998 667887554 21 1112333344555666654 78
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
.+|+|+++.+..++..+... ...+..+ .+++|++|.+++.+|+..|..++
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 131 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICS 131 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEET
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCC
Confidence 89999999999888888776 5444444 68899999999999999996654
No 51
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.25 E-value=3.3e-11 Score=117.15 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=77.5
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHH-
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSAL- 75 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L- 75 (636)
.+.+|.+|+|+|+|||||||+|+.|++.++ +.+++.|.+ +. +...........+.+.+
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~ 93 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLN 93 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Confidence 345678999999999999999999999998 556887554 21 01111222223333333
Q ss_pred --hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 006654 76 --KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 76 --~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~ 126 (636)
..+..||+|+++.+..++..|..+ ...+..+ .+|+|++|.+++.+|+..|.
T Consensus 94 ~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 94 NPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred cccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 346789999999888888777665 4333323 68999999999999999985
No 52
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.24 E-value=3.6e-11 Score=114.39 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=80.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh----hhhc----CCCC-----CcH-HHHHHHHHHHHhC-CCeEEE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ----DTIN----KGKS-----GTK-VQCLTSASSALKK-GKSVFL 83 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~----D~ir----~~~~-----~~~-~~~~~~~~~~L~~-G~~VII 83 (636)
++.+|+|+|+|||||||+|+.|++.++.++. ++. +.++ .+.. ..+ ..+...+...+.. |..||+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i-~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~ 82 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV-FEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIV 82 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE-CCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE-EchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 5678999999999999999999999885432 242 1222 1110 111 1233455556665 778999
Q ss_pred eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP 151 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P 151 (636)
|++......+..+... ...+..+..|+|++|.+++.+|+..|..++ ...+.+++++..++++
T Consensus 83 d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~------~~~~~~~~~~~~~~~~ 145 (183)
T 2vli_A 83 PVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ------VNVGTVEDRLNELRGE 145 (183)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----------CCHHHHHHHHHHHTSG
T ss_pred eeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc------hhHHHHHHHHHhhccc
Confidence 9988887777777666 555655566999999999999999986532 2356677777777665
No 53
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.24 E-value=3.3e-11 Score=116.03 Aligned_cols=105 Identities=21% Similarity=0.392 Sum_probs=76.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHHHH----HHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCL----TSASSA 74 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~~~----~~~~~~ 74 (636)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +......... ..+...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~ 87 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG--FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS 87 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 3567999999999999999999999998 77788766521 1111222222 233344
Q ss_pred HhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 75 L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+..|..||+|+++....++..|... ...+ .+|+|++|.+++.+|+..|..
T Consensus 88 ~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~---~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 88 LGDTRGFLIDGYPREVKQGEEFGRRIGDPQ---LVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp TTSCSCEEEETCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHTCC
T ss_pred cccCccEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHcCCC
Confidence 4568899999999998888777554 3333 488999999999999999865
No 54
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.24 E-value=2.6e-11 Score=118.95 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=79.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK---GK 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~~---G~ 79 (636)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+. . +...........+.+.+.. +.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCC
Confidence 478999999999999999999998 6678875542 1 1111233334555566644 77
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
.+|+|+++....++..|..+ ...+..+ .+++|++|.+++.+|+..|..++
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 131 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICK 131 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEET
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCC
Confidence 89999999999888888776 5444444 68899999999999999996554
No 55
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.23 E-value=9e-11 Score=117.95 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=96.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-hcC------------------CCCCcHHHHHHHHHHHHhC---C
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-INK------------------GKSGTKVQCLTSASSALKK---G 78 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-ir~------------------~~~~~~~~~~~~~~~~L~~---G 78 (636)
..+.+.|+|||||||+|+.|++.++ +.+|+.++ ++. +...+.+.+...+.++|.. .
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g--~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG--IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT--CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC--CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence 3568999999999999999999998 77898744 432 1222344555677777764 4
Q ss_pred CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCc
Q 006654 79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF 157 (636)
Q Consensus 79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egf 157 (636)
.+||+|+++++..|...|... .... .+|+|++|.+++.+|+..|..++.. .+.++..|.+|. .++.
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d---~VI~Ldvp~e~l~~Rl~~R~~~~~~---------G~~Yh~~~~pp~-~~~~ 153 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEAGVAID---YVLEIDVPFSEIIERMSGRRTHPAS---------GRTYHVKFNPPK-VEGK 153 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHTTCCCS---EEEEECCCHHHHHHHHHTEEEETTT---------TEEEETTTBCCS-STTB
T ss_pred CCeEecCCCCcHHHHHHHHHhCCCcc---EEEEEeCCHHHHHHHHHcCCccccc---------CCcccccCCCCC-ccCc
Confidence 679999999999888877554 3333 4899999999999999999876432 122334466666 3443
Q ss_pred cEE----EEeCChhHHHHHHHH
Q 006654 158 SRI----TLCQNENDVQAALDT 175 (636)
Q Consensus 158 d~V----iii~~~~~vdaiv~~ 175 (636)
+++ .+.+.++..+.+.++
T Consensus 154 ~d~~g~~L~~R~DD~~e~i~~R 175 (230)
T 3gmt_A 154 DDVTGEPLVQRDDDKEETVKKR 175 (230)
T ss_dssp CTTTCCBCBCCGGGSHHHHHHH
T ss_pred CCCccCccccCCCCCHHHHHHH
Confidence 321 133555556655554
No 56
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.22 E-value=5.5e-11 Score=113.54 Aligned_cols=104 Identities=19% Similarity=0.305 Sum_probs=75.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHHHHHHHHHHHhCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKKGK 79 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~~~~~~~~~L~~G~ 79 (636)
++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. +...........+...+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~- 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG--FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER- 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC-
Confidence 457899999999999999999999988 67788764421 11112222334445555544
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~ 126 (636)
+|+|+++....++..+..+ ...+... .+|+|++|.+++.+|+..|.
T Consensus 80 -~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 80 -VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp -EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred -EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 9999998888777766655 4444433 68999999999999999986
No 57
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.22 E-value=7.9e-11 Score=110.47 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=81.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-------------
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN------------- 87 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn------------- 87 (636)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+...... ....+ .....+..|..+|.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~-~~~~~-~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~ 77 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKSG-NEKLF-EHFNKLADEDNVIIDRFVYSNLVYAKKFKDY 77 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC--CCEEECCCHHHHTTC-HHHHH-HHHHHHTTCCSEEEESCHHHHHHHTTTBTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CeeecCcccccchhH-HHHHH-HHHHHHHhCCCeEEeeeecchHHHHHHHHHh
Confidence 4789999999999999999999998 666888876543321 12222 234567888889999521
Q ss_pred --CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEE
Q 006654 88 --LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT 161 (636)
Q Consensus 88 --~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Vi 161 (636)
.....+..+... .. +..+|+|++|.+++.+|+..|.+. ....+...++.+.|+.+........+.
T Consensus 78 ~~~~~~~~~~l~~~~~~---~~~~i~l~~~~e~~~~R~~~r~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (173)
T 3kb2_A 78 SILTERQLRFIEDKIKA---KAKVVYLHADPSVIKKRLRVRGDE------YIEGKDIDSILELYREVMSNAGLHTYS 145 (173)
T ss_dssp CCCCHHHHHHHHHHHTT---TEEEEEEECCHHHHHHHHHHHSCS------CCCHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred hHhhHHHHHHHhccCCC---CCEEEEEeCCHHHHHHHHHhcCCc------chhhhHHHHHHHHHHHHHhhcCCCEEE
Confidence 223333333322 22 234889999999999999998432 223455666666555543323334443
No 58
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=99.20 E-value=4.2e-12 Score=124.88 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=84.7
Q ss_pred CccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhh
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASV 267 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~ 267 (636)
+..+. +++..+|.+|++.+++.+. .++|. ++ .|.++++.|.++-|.+-+ +.|..||.+|
T Consensus 62 gGV~~-AI~~aaG~~l~~ec~~~~~-~~~G~-a~--------iT~g~~L~~k~VIH~vgp----------~~L~~~y~~~ 120 (199)
T 3kh6_A 62 SGVSR-AILEGAGQAVESECAVLAA-QPHRD-FI--------ITPGGCLKCKIIIHVPGG----------KDVRKTVTSV 120 (199)
T ss_dssp STHHH-HHHHHHCHHHHHHHHHHHT-SCCCS-SE--------EEECTTSSSSEEEEEETT----------SCHHHHHHHH
T ss_pred chHHH-HHHHHhhHHHHHHHHHhCC-CCCCe-EE--------EecCCCCCCCEEEEeCCC----------HHHHHHHHHH
Confidence 45656 8999999999998887643 34553 11 245567777777776432 3588899999
Q ss_pred hcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654 268 NQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (636)
Q Consensus 268 l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (636)
|.+|++++++|||||+||||+||||.++||+++++++++|+++++
T Consensus 121 L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~ 165 (199)
T 3kh6_A 121 LEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHS 165 (199)
T ss_dssp HHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999864
No 59
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.20 E-value=1e-10 Score=113.47 Aligned_cols=106 Identities=17% Similarity=0.341 Sum_probs=76.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC------C--------------CCCcHH----HHHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------G--------------KSGTKV----QCLTSAS 72 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~------~--------------~~~~~~----~~~~~~~ 72 (636)
+.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.. + ...... .+...+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 89 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS 89 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 34577999999999999999999999998 67888775521 1 111111 1223444
Q ss_pred HHHhCC-CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 73 SALKKG-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 73 ~~L~~G-~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+..| ..+|+|+++.+..++..+... ...+ .+|+|++|.+++.+|+..|..
T Consensus 90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~---~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 90 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHhccc
Confidence 566677 589999988888777665544 3333 478999999999999999864
No 60
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.20 E-value=1.1e-10 Score=115.86 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=77.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC--CCe
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK--GKS 80 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~--G~~ 80 (636)
+|+|.|+|||||||+|+.|++.++ +.+++.|++ +.. .......+...+..+|.. |..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCe
Confidence 689999999999999999999998 677888655 321 111223344566677777 899
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCe-EEEEEEeCCHHHHHHHHHhcccc
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~-v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
||+|+++.+..++..+..+ ...+.. -.+|+|++|.+++.+|+..|..+
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 129 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRIC 129 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEE
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCC
Confidence 9999988887777666544 333322 25889999999999999999753
No 61
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.19 E-value=8.1e-11 Score=131.74 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=86.8
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC------------CcH-----HHH----HHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS------------GTK-----VQC----LTSAS 72 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~------------~~~-----~~~----~~~~~ 72 (636)
..+|.+|+|+|+|||||||+|++|++.++ ....+++.|.++.... +.. ..+ +..+.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999998874 3456688888753210 111 111 12233
Q ss_pred HHH--hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654 73 SAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 73 ~~L--~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p-~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~ 145 (636)
..| ..|..||+|+||.....|..+.++ ++.++.+.++++.++ .+++.+|+..|........+..++++++.+.
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~ 188 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFM 188 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHH
Confidence 344 568899999999999999999888 777877777888887 5556666656653211111224666665553
No 62
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=99.18 E-value=6.5e-13 Score=127.24 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=62.7
Q ss_pred cccCcceecccccccc-hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC-CeE
Q 006654 238 CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NAR 315 (636)
Q Consensus 238 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~-~~~ 315 (636)
|.++-|.+-|.|.... .+.+++|..||.+||.+|++++++|||||+||||+||||.++||+ +++++.+|++... .+.
T Consensus 70 ~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~ 148 (168)
T 3gpg_A 70 TYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVV 148 (168)
T ss_dssp TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEE
T ss_pred CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEE
Confidence 3444444445555322 334578999999999999999999999999999999999999999 8899999987653 245
Q ss_pred EEEecc
Q 006654 316 LVLVDL 321 (636)
Q Consensus 316 ~v~~~~ 321 (636)
|+.++.
T Consensus 149 fv~f~~ 154 (168)
T 3gpg_A 149 IYCRDK 154 (168)
T ss_dssp EEESCH
T ss_pred EEECCH
Confidence 555433
No 63
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=99.11 E-value=6.6e-12 Score=119.32 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=90.8
Q ss_pred CccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhh
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASV 267 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~ 267 (636)
|..+. +++..++.++.+..++.| ..++|. ++ .|.+.++.+.++-|.+.+.|.. ...+.+..||.+|
T Consensus 31 gGv~~-aI~~~~G~~l~~~c~~~g-~~~~G~-a~--------it~~~~L~~~~Vih~vgp~~~~---~~~~~L~~~~~~~ 96 (159)
T 2dx6_A 31 AGVAG-AILRKGGPSIQEECDRIG-KIRVGE-AA--------VTGAGNLPVRYVIHAAVLGDEP---ASLETVRKATKSA 96 (159)
T ss_dssp STTHH-HHHHHHCTHHHHHHHHHC-CCCTTC-EE--------EEECTTSSSSEEEEEEEESSSC---CCHHHHHHHHHHH
T ss_pred chHHH-HHHHHhCHHHHHHHHhcC-CCCCCc-EE--------EecCCCCCCCEEEEEeCCCCCC---chHHHHHHHHHHH
Confidence 45556 789999999998888765 345554 11 2445567778888888777752 2367888999999
Q ss_pred hcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 006654 268 NQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVD 320 (636)
Q Consensus 268 l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~ 320 (636)
|.++.+++++|||||+||||+||||.++|++++++++.+| .....+.++..+
T Consensus 97 L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~ 148 (159)
T 2dx6_A 97 LEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYR 148 (159)
T ss_dssp HHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESS
T ss_pred HHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECC
Confidence 9999999999999999999999999999999999999999 211234555543
No 64
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.10 E-value=7e-10 Score=109.02 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=72.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhCC---C
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKKG---K 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~G---~ 79 (636)
.|+|.|+|||||||+|+.|++.++ +.+++.|++ ++ +.......+...+...+..+ .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 79 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN 79 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 479999999999999999999998 667887554 32 01112233445556666553 5
Q ss_pred eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.||+|+++.+..+...|... ...+ .+++|++|.+++.+|+..|..+
T Consensus 80 ~~i~dg~~~~~~~~~~l~~~~~~~d---~vi~l~~~~e~~~~R~~~R~~~ 126 (214)
T 1e4v_A 80 GFLLDGFPRTIPQADAMKEAGINVD---YVLEFDVPDELIVDRIVGRRVH 126 (214)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCCCS---EEEEEECCHHHHHHHHHTEEEE
T ss_pred CEEEeCCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHCCccc
Confidence 79999988777666555333 2222 4889999999999999988754
No 65
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=99.10 E-value=1.2e-11 Score=122.83 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=89.1
Q ss_pred CCccCCCCCchhhH----HHHHHHHhh----cCCC-CCCCCCCcccCCCCCCccccccccc---ccCcceecc----ccc
Q 006654 187 HGSFGQKNPDAKIQ----LGIMKFLKK----VDAP-SNTGSTASSTQDPVPPQITEEKNSC---LEGQEITSL----LSD 250 (636)
Q Consensus 187 hgc~~~~~~~~~v~----~~i~k~l~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~ 250 (636)
.|+.+. +++..+| .+|.+-+++ .|.. .++|. ++ .|.+.++.+ .++-|.+-+ .|+
T Consensus 49 ggGV~~-aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~~G~-a~--------iT~~~~L~~~g~k~VIH~vgP~~~~~~~ 118 (211)
T 1vhu_A 49 GGGVAY-AIAKACAGDAGLYTEISKKAMREQFGRDYIDHGE-VV--------VTPAMNLEERGIKYVFHTVGPICSGMWS 118 (211)
T ss_dssp CSHHHH-HHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTC-CE--------EEECGGGGGGTCCEEEEEECCCCTTCCC
T ss_pred ccHHHH-HHHHHhCCCchHHHHHHHHHHHHHcCCCcccCCc-EE--------EEECCCCCccCcCEEEEecCCccccccC
Confidence 466766 8999999 888876665 4543 46664 22 255667777 788888878 664
Q ss_pred ccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHH
Q 006654 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVN 309 (636)
Q Consensus 251 ~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~ 309 (636)
. ...+.|..||.+||.+|.+++++|||||+||||+||||.++||+++++++++|++
T Consensus 119 ~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l~ 174 (211)
T 1vhu_A 119 E---ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKG 174 (211)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCCC
T ss_pred c---chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 2 4567888999999999999999999999999999999999999999999999993
No 66
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=99.10 E-value=2.3e-11 Score=117.19 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=78.4
Q ss_pred CccCCCCCchhhHHHHHHHHhhc----CCCC---CCCC--CCcccCCCCCCcccccccccccCcceecccccccchhhcc
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKKV----DAPS---NTGS--TASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKG 258 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~~----g~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (636)
|+.+. ++|.++|.+|++..++. |.-. ++|. ++.++.|++ -|.|+. ...++
T Consensus 51 gGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~a~iT~G~~l~t~~VIHtV------------------GP~~~~--~~~~~ 109 (176)
T 3ejf_A 51 SGVAK-AIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVV------------------GPRHGD--NNLHE 109 (176)
T ss_dssp SHHHH-HHHHHHCHHHHHHHHHHHHHHCCCSEEEECCCSTTEEEEEEEC------------------CCCTTC--SCHHH
T ss_pred chHHH-HHHHHhhHHHHHHHHHHHHhcCCCCeeecccccccCCEEEEeC------------------CCCCCC--ccHHH
Confidence 56667 89999999999877653 4322 1333 344455544 455543 34567
Q ss_pred cCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccC
Q 006654 259 TENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT 322 (636)
Q Consensus 259 ~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~ 322 (636)
+|..||.+||. ++++|||||+||||+||||.++||+++++++++ ..+++++++.+
T Consensus 110 ~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~v~v~~~~~D 164 (176)
T 3ejf_A 110 KLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CTIRVLLFSLS 164 (176)
T ss_dssp HHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CCCEEEEEESC
T ss_pred HHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cceEEEEEcCC
Confidence 89999999998 899999999999999999999999999999983 34677775433
No 67
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.09 E-value=4.9e-10 Score=110.61 Aligned_cols=106 Identities=25% Similarity=0.337 Sum_probs=71.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHh--
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALK-- 76 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~-- 76 (636)
+++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. . +...+.......+.+.+.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQP 80 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999998 6778876542 1 112222223332333332
Q ss_pred --CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 77 --KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 77 --~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
.+.++|+|+++.+..++..+... ...+ .+|+|++|.+++.+|+..|..+
T Consensus 81 ~~~~~~~vidg~~~~~~~~~~l~~~~~~~~---~vi~L~~~~~~~~~R~~~r~~~ 132 (222)
T 1zak_A 81 DAQENGWLLDGYPRSYSQAMALETLEIRPD---TFILLDVPDELLVERVVGRRLD 132 (222)
T ss_dssp HHHHTCEEEESCCCSHHHHHHHHTTTCCCS---EEEEEECCHHHHHHHHTTEEEC
T ss_pred cccCCcEEEECCCCCHHHHHHHHHcCCCCC---EEEEEECCHHHHHHHHHcCCcc
Confidence 24568889988777665554322 1122 4899999999999999988653
No 68
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=99.08 E-value=1.7e-11 Score=117.45 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654 187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP 262 (636)
Q Consensus 187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (636)
.|+.+. ++|.++|.+|++..++. | ..++|. ++ .|.++ +.+.++-|.+-|.|.. ++.+++|..
T Consensus 42 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~g~-l~~~~VIHtVgP~~~~--~~~~~~L~~ 107 (168)
T 3eti_A 42 VGGVAR-AIDVFTGGKLTKRSKEYLKSSK-AIAPGN-AV--------LFENV-LEHLSVMNAVGPRNGD--SRVEGKLCN 107 (168)
T ss_dssp CSTTHH-HHHHHTTTHHHHHHHHHHTTSC-CCCTTE-EE--------EEEEE-ETTEEEEEEECCCTTS--TTHHHHHHH
T ss_pred CchHHH-HHHHHHHHHHHHHHHHHHHHcC-CCCCCC-EE--------EecCC-CCccEEEEecCCCCCc--chHHHHHHH
Confidence 467767 89999999999877663 3 345553 12 24455 6777788887788765 555788999
Q ss_pred hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccC
Q 006654 263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT 322 (636)
Q Consensus 263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~ 322 (636)
||.+||.+. +|||||+||||+||||.++||+++++++++ ..++++.++..
T Consensus 108 ~y~~~L~~~-----~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f~~~ 157 (168)
T 3eti_A 108 VYKAIAKCD-----GKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVYTDQ 157 (168)
T ss_dssp HHHHHHTSC-----SCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEECCHH
T ss_pred HHHHHHHhc-----CceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHH
Confidence 999999862 799999999999999999999999999997 45667665333
No 69
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.07 E-value=9.5e-10 Score=109.70 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=77.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHhC-
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK- 77 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~~- 77 (636)
..+..|+|.|+|||||||+|+.|++.++ +.+++.|++. + +...........+...+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP 91 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 3457899999999999999999999998 6778876542 1 1111223333445555543
Q ss_pred --CCeEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 006654 78 --GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 78 --G~~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
+.+||+|+++.+..++..+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus 92 ~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 146 (233)
T 1ak2_A 92 PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH 146 (233)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 4679999988888777665544 32211 225889999999999999999765
No 70
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.2e-10 Score=111.45 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=68.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEeC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID~ 85 (636)
+..+|+|+|+|||||||+++.|++.++ +.+++.|.+.....+ . +......+...+..+..+||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~--~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ 101 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN--VPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVIST 101 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEEC
Confidence 446899999999999999999999998 556888776422111 0 1112233444555667788884
Q ss_pred ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH-hccccc
Q 006654 86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHE 129 (636)
Q Consensus 86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~-~R~~~~ 129 (636)
.......+..+.. .+ .+|||++|.+++.+|+. .|..++
T Consensus 102 ggg~~~~~~~~~~l~~---~~---~vi~L~~~~e~l~~Rl~~~~~~Rp 143 (199)
T 3vaa_A 102 GGGAPCFYDNMEFMNR---TG---KTVFLNVHPDVLFRRLRIAKQQRP 143 (199)
T ss_dssp CTTGGGSTTHHHHHHH---HS---EEEEEECCHHHHHHHHHHTGGGCG
T ss_pred CCcEEccHHHHHHHHc---CC---EEEEEECCHHHHHHHHhcCCCCCC
Confidence 3334444433322 12 48899999999999998 565543
No 71
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=99.04 E-value=2e-11 Score=116.94 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=61.9
Q ss_pred cccCcceecccccccc-hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC----
Q 006654 238 CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG---- 312 (636)
Q Consensus 238 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~---- 312 (636)
+.++-|.+-|.|.... .+..++|..||.+||.++++++++|||||+||||+||||.++|++++. +|++..+
T Consensus 64 ~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~----~~l~~~~~~~~ 139 (168)
T 3gqe_A 64 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN----HLLTALDTTDA 139 (168)
T ss_dssp TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHH----HHHHHHTTSCC
T ss_pred CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHH----HHHHHCCCCCC
Confidence 4555555566665432 334578999999999999999999999999999999999999999554 4444432
Q ss_pred CeEEEEeccCcchh
Q 006654 313 NARLVLVDLTQGSK 326 (636)
Q Consensus 313 ~~~~v~~~~~~~s~ 326 (636)
.+.+|++|.+.+..
T Consensus 140 ~V~iv~fd~~~~~~ 153 (168)
T 3gqe_A 140 DVAIYCRDKKWEMT 153 (168)
T ss_dssp EEEEEESCHHHHHH
T ss_pred eEEEEEcCHHHHHH
Confidence 25566655544433
No 72
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.04 E-value=1.4e-09 Score=107.75 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=73.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHhC-
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK- 77 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~~- 77 (636)
.++.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. . +...........+.+.+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~ 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE--LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS--SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC--CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 3567899999999999999999999998 6778875542 1 1112222333444455553
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 78 -G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
+..+|+|+++.+..+...+..+...+ .+|+|++|.+++.+|+..|..+
T Consensus 83 ~~~~~vid~~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~~~R~~~R~~~ 131 (227)
T 1zd8_A 83 TQYSWLLDGFPRTLPQAEALDRAYQID---TVINLNVPFEVIKQRLTARWIH 131 (227)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTSCCC---EEEEEECCHHHHHHHHTCEEEE
T ss_pred cCCCEEEeCCCCCHHHHHHHHHhcCCC---EEEEEECCHHHHHHHHHcCcCC
Confidence 67899999887766655443332222 4889999999999999988643
No 73
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.02 E-value=2.2e-09 Score=102.93 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=77.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCCC----cH-H--HHH----HHHHHHHhCCCeEEE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----TK-V--QCL----TSASSALKKGKSVFL 83 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~~----~~-~--~~~----~~~~~~L~~G~~VII 83 (636)
.++.+|+|+|+|||||||+++.|++.++ ..+.+++.|.++....+ .. . ... ..+...+..|..||+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~ 90 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVIC 90 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3568999999999999999999998764 23567888888654221 11 1 111 122333567878899
Q ss_pred eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
|+++.....|..+..+ ...+.+..+|+|++|.+++.+|+..
T Consensus 91 d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 91 SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 9988887788777776 6556677899999999999999753
No 74
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.01 E-value=1.2e-10 Score=120.10 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=87.5
Q ss_pred CCccCCCCCchhhH-HHHHHHHhh---cCCCCCCCCCCcccCCCC--C-CcccccccccccCcceecccccccc------
Q 006654 187 HGSFGQKNPDAKIQ-LGIMKFLKK---VDAPSNTGSTASSTQDPV--P-PQITEEKNSCLEGQEITSLLSDAAG------ 253 (636)
Q Consensus 187 hgc~~~~~~~~~v~-~~i~k~l~~---~g~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~------ 253 (636)
.|++|. +++.++| ..+.+..++ .|+ .++|.- + ++..- + -.+.+.++.|.++-|.+-++++...
T Consensus 86 gGGVd~-AI~raaGg~~l~~ec~~~~~~g~-~~~G~a-~-iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~ 161 (284)
T 1njr_A 86 GGGFDK-ALYNYFGGKPFETWFRNQLGGRY-HTVGSA-T-VVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQN 161 (284)
T ss_dssp CSSHHH-HHHHHHTSHHHHHHHHHHTTTSC-CCTTCC-E-EEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTC
T ss_pred CchHHH-HHHHhhCcHHHHHHHHHHHhcCC-CCCCeE-E-EEECCcccccccchhcCCCCEEEEeCCCccCCCCCccccc
Confidence 577877 8999875 666776655 344 455641 1 11100 0 0011127788888888888776421
Q ss_pred --hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654 254 --EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312 (636)
Q Consensus 254 --~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~ 312 (636)
....+.+..||.+||.+| +++++|||||+||||+||||.++||+++++++++|+..++
T Consensus 162 p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~f~~~~~ 221 (284)
T 1njr_A 162 PLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDH 221 (284)
T ss_dssp HHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTGGG
T ss_pred ccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 023467888999999999 9999999999999999999999999999999999998765
No 75
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.97 E-value=9.9e-10 Score=104.82 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=63.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-cH------------HHHHHHHHHHHhCCCeEEEeC-
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQCLTSASSALKKGKSVFLDR- 85 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~~------------~~~~~~~~~~L~~G~~VIID~- 85 (636)
+.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ +. ......+...+.....+|++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g 82 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK--RILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATG 82 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecC
Confidence 56789999999999999999999998 667888887543222 00 111123333343334444444
Q ss_pred --CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 86 --tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
..+....|..+... + .+|+|++|.+++.+|+.
T Consensus 83 g~~~~~~~~~~~l~~~---~---~vi~L~~~~e~l~~Rl~ 116 (185)
T 3trf_A 83 GGVVLDEKNRQQISET---G---VVIYLTASIDTQLKRIG 116 (185)
T ss_dssp TTGGGSHHHHHHHHHH---E---EEEEEECCHHHHHHHHH
T ss_pred CceecCHHHHHHHHhC---C---cEEEEECCHHHHHHHHh
Confidence 34555555544222 2 48899999999999993
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.95 E-value=2.9e-09 Score=101.39 Aligned_cols=143 Identities=24% Similarity=0.349 Sum_probs=105.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC----C--CCCc----HHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----G--KSGT----KVQCLTSASSALKKGKSVFLDRCNL 88 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~----~--~~~~----~~~~~~~~~~~L~~G~~VIID~tn~ 88 (636)
+..++.|+|++|||||||++.+... ...++.|.++. . .... ...+...+...+..|..+++|.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKP----TEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV 83 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCG----GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHccC----CeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 5678999999999999999986522 34466666541 1 1111 1223345566678899999999999
Q ss_pred CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC---CccCCccEEEEeC
Q 006654 89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP---KLSEGFSRITLCQ 164 (636)
Q Consensus 89 ~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P---~~~Egfd~Viii~ 164 (636)
....++.+..+ +.......+++||.|...|-.|+..|..+ .++++++.++...+... ...+|+.-|++..
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~------~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH 157 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR------QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILN 157 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC------CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeC
Confidence 98888888888 77888889999999999999999999864 67888888877654321 1256888887777
Q ss_pred ChhHHHH
Q 006654 165 NENDVQA 171 (636)
Q Consensus 165 ~~~~vda 171 (636)
+.+.++.
T Consensus 158 ~~~~~~~ 164 (171)
T 4gp7_A 158 SPEEVEE 164 (171)
T ss_dssp SHHHHHH
T ss_pred CHHHhhh
Confidence 7666553
No 77
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=98.94 E-value=1.7e-10 Score=113.26 Aligned_cols=49 Identities=27% Similarity=0.284 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCCc
Q 006654 558 GSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLL 607 (636)
Q Consensus 558 ~~~~~a~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~ 607 (636)
.||++||+.||.+||+|++ ++|.||++|+|.|.||+|..|+|||||..-
T Consensus 4 msw~~~L~~yi~~Pe~~p~-~v~edd~~~af~D~~P~a~~H~LVIPk~h~ 52 (204)
T 3sp4_A 4 MSFRDNLKVYIESPESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPH 52 (204)
T ss_dssp CSGGGTTHHHHHCGGGCTT-EEEECSSEEEEECSSCSSSSEEEEEECCTT
T ss_pred CcHHHHHHHHhcChhhCCC-EEEEcCCEEEEeCCCCCCCccEEEEecccc
Confidence 4699999999999999988 999999999999999999999999999864
No 78
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.93 E-value=6.5e-09 Score=101.94 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=76.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCCCC----c-H--HH----HHHHHHHHHhCCCeE
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKSG----T-K--VQ----CLTSASSALKKGKSV 81 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~~~----~-~--~~----~~~~~~~~L~~G~~V 81 (636)
..++.+|+|+|+|||||||+++.|++.++ .++.+++.|.++..... . . .. +...+...+..|..|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~V 101 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIA 101 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 35678999999999999999999998654 44778898888753211 1 1 11 223345667889999
Q ss_pred EEeCCCCCHHHHHHHHHh-C------CCCCeEEEEEEeCCHHHHHHHH
Q 006654 82 FLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l-~------~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
|+|........|..+..+ . ..+.+..+|+|++|.+++.+|+
T Consensus 102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 999654445667666665 4 3345678999999999999994
No 79
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=98.91 E-value=9.7e-11 Score=113.67 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=83.4
Q ss_pred CccCCCCCchhhHHHHHHHHhh----cCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChh
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKK----VDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPE 263 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (636)
|+.+. +++.++|.+|++-.++ .| ..++|. ++ .|.+.++ +.++-|.+-+.|.. .+.+++|..|
T Consensus 53 gGV~~-AI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L-~~~VIH~vgP~~~~--~~~~~~L~~~ 118 (182)
T 2acf_A 53 GGVAG-ALNKATNGAMQKESDDYIKLNG-PLTVGG-SC--------LLSGHNL-AKKCLHVVGPNLNA--GEDIQLLKAA 118 (182)
T ss_dssp SHHHH-HHHHHTTTHHHHHHHHHHHHHC-CCCTTC-EE--------EEECTTT-CSEEEEECCCCGGG--TCCTTHHHHH
T ss_pred chHHH-HHHHHhCHHHHHHHHHHHHHcC-CCCCCc-EE--------EeeCCCC-CceEEEECCCCCCC--CchHHHHHHH
Confidence 56666 8899999999876664 23 445564 11 1333444 34566766666654 3345677788
Q ss_pred hhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCcchhhhh
Q 006654 264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILS 329 (636)
Q Consensus 264 ~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~~~s~~Ls 329 (636)
|.+| ++++|||||+||||+||||.++||+++++++++ .+.++..|...|...|.
T Consensus 119 y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~------~V~~v~~d~~~y~~~l~ 172 (182)
T 2acf_A 119 YENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKALYEQVVM 172 (182)
T ss_dssp HHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHHHHHHHHH
T ss_pred HHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC------cEEEEECCHHHHHHHHH
Confidence 8876 689999999999999999999999999999985 46666666666666664
No 80
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.91 E-value=2.9e-09 Score=101.64 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=71.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHH-HHHHHHHhCCCeEEEeC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCL-TSASSALKKGKSVFLDR 85 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~-~~~~~~L~~G~~VIID~ 85 (636)
+.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+. ..... ..+.+.+.....||.++
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g 79 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALG--VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLG 79 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecC
Confidence 44689999999999999999999998 6678988875321110 00111 22233333333344444
Q ss_pred C--CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654 86 C--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (636)
Q Consensus 86 t--n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~ 147 (636)
. .+....|..+ . .+ .+|+|++|.+++.+|+..|..++.. ......+.++.++..
T Consensus 80 ~~~v~~~~~~~~l---~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~~-~~~~~~~~i~~~~~~ 135 (184)
T 2iyv_A 80 GGAVTSPGVRAAL---A-GH---TVVYLEISAAEGVRRTGGNTVRPLL-AGPDRAEKYRALMAK 135 (184)
T ss_dssp TTGGGSHHHHHHH---T-TS---CEEEEECCHHHHHHHTTCCCCCSST-TSCCHHHHHHHHHHH
T ss_pred CcEEcCHHHHHHH---c-CC---eEEEEeCCHHHHHHHHhCCCCCCCc-cCCCHHHHHHHHHHH
Confidence 2 2334444433 3 33 3789999999999999988643321 112345566666543
No 81
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.91 E-value=3.4e-09 Score=107.58 Aligned_cols=126 Identities=12% Similarity=0.181 Sum_probs=83.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--CCC----------------------------CCcHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------------SGTKVQCLTS 70 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~~~----------------------------~~~~~~~~~~ 70 (636)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+. .+. ........+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~--~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 79 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG--WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR 79 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC--CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC--CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence 4789999999999999999999988 5567766642 100 0111222222
Q ss_pred HH---HHHhCCCeEEEeCCCCCHHHHHHHHHh-CC----CCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHH
Q 006654 71 AS---SALKKGKSVFLDRCNLEREQRTDFVKL-GG----PEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVV 141 (636)
Q Consensus 71 ~~---~~L~~G~~VIID~tn~~~~~R~~l~~l-~~----~g~~v~vV~Ld~p~-e~l~~R~~~R~~~~~~~~~~vp~evi 141 (636)
+. +.+..|..+|+++... . . +..+ .. .++.+.++++++|. +++.+|+.+|..... ....++++++
T Consensus 80 ~~~~i~~~~~g~~vIl~gg~~-~-~---~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml-~~~~~~~~~l 153 (253)
T 2ze6_A 80 LIFEVDWRKSEEGLILEGGSI-S-L---LNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMF-AIREDRPSLL 153 (253)
T ss_dssp HHHHHHTTTTSSEEEEEECCH-H-H---HHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCSSSCCHH
T ss_pred HHHHHHHHhCCCCeEEeccHH-H-H---HHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHH-hcCcccchHH
Confidence 22 4447788888886432 1 1 1222 33 56677899999997 999999999976310 1124556778
Q ss_pred HHHHhhhcCCCcc
Q 006654 142 NRMLQKKELPKLS 154 (636)
Q Consensus 142 ~rm~~~fe~P~~~ 154 (636)
+.+...|+.|...
T Consensus 154 ~e~~~~~~~p~~~ 166 (253)
T 2ze6_A 154 EELAELWNYPAAR 166 (253)
T ss_dssp HHHHHHHTSTTHH
T ss_pred HHHHHhcCCcchH
Confidence 8888888887754
No 82
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.89 E-value=4.3e-09 Score=102.71 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=65.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC---------------------CeEEeehhhhcC----CCCCc--------H
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTINK----GKSGT--------K 64 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---------------------~~~~Is~D~ir~----~~~~~--------~ 64 (636)
.++.+|+|+|+|||||||+++.|++.++. .+..++.|.+.. +.+.. .
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 45678999999999999999999988742 223334444321 11100 0
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCC-CeEEEEEEe-CCHHHHHHHHHhccc
Q 006654 65 VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLD-LPAKLCISRSVKRIE 127 (636)
Q Consensus 65 ~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g-~~v~vV~Ld-~p~e~l~~R~~~R~~ 127 (636)
......+...+..|+.||+|... .....+. ...+ ....+||++ +|.+++.+|+..|..
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~~---~~~~~l~--~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~ 149 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMNI---NGVKQLK--ESKHIQDGIYIFVKPPSIDILLGRLKNRNT 149 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCH---HHHHHHH--HCSSCSCCEEEEEECSCHHHHHHHHHTCTT
T ss_pred cCCHHHHHHHHHcCCeEEEEECH---HHHHHHH--HhcCCCCeEEEEEcCCCHHHHHHHHHHcCC
Confidence 00113456677899999999732 2222222 2221 123578888 899999999998864
No 83
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.88 E-value=2.1e-08 Score=97.43 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=76.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCC---C-cH---H----HHHHHHHHHHhCCCeEE
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-TK---V----QCLTSASSALKKGKSVF 82 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~---~-~~---~----~~~~~~~~~L~~G~~VI 82 (636)
..++.+|+|+|+|||||||+++.|+..+ |.....++.|.++.... + .. . .....+......|..+|
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 101 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICI 101 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceEE
Confidence 3567899999999999999999999887 42223788888864321 1 11 1 11133344456788899
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
++..+..+..|..+..+ .. ..+..|||++|.+++.+|.
T Consensus 102 ~~~~~~~~~~r~~~~~~~~~--~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 102 ASLISPYRTDRDACRSLLPE--GDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp EECCCCCHHHHHHHHHTSCT--TSEEEEEECCCHHHHHHHC
T ss_pred EecCCchHHHHHHHHHhcCC--CCEEEEEEeCCHHHHHHhc
Confidence 99888888889888777 53 3466799999999999997
No 84
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.88 E-value=7.8e-09 Score=98.66 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=71.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc-------------CCCCCcH-----------HHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN-------------KGKSGTK-----------VQCLTSASSA 74 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir-------------~~~~~~~-----------~~~~~~~~~~ 74 (636)
+|+|.|+|||||||+|+.|++.+ + +.+++.|... ++..... ..+...+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g--~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG--YFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999987 6 4455544211 1111111 0111233456
Q ss_pred HhCCCeEEEeCC------------CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654 75 LKKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (636)
Q Consensus 75 L~~G~~VIID~t------------n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi 141 (636)
+..|..||+|.. .........+..+ ......-.+|+|++|.+++.+|+..|... . ..+..
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~------~-~~~~~ 152 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF------E-NKEFL 152 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCC------C-CHHHH
T ss_pred HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCcc------c-hHHHH
Confidence 778899999942 2222233333222 21111225889999999999999865331 2 45566
Q ss_pred HHHHhhhcC
Q 006654 142 NRMLQKKEL 150 (636)
Q Consensus 142 ~rm~~~fe~ 150 (636)
.++...|+.
T Consensus 153 ~~~~~~~~~ 161 (195)
T 2pbr_A 153 EKVRKGFLE 161 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555544
No 85
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.87 E-value=1.2e-08 Score=115.97 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=81.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCC----c---HH----HHHHHHHHHHhCCCeEEEe
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----T---KV----QCLTSASSALKKGKSVFLD 84 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~----~---~~----~~~~~~~~~L~~G~~VIID 84 (636)
++.+|+|+|+|||||||+|+.|++.+ +.++..++.|.++..... . .. .+...+...+..|..||.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d 130 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS 130 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 68899999999999999999999988 767888888888754221 1 11 1223334456788888888
Q ss_pred CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK 124 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~ 124 (636)
.....+..|..+..+ ...+.++.+|+|++|.++|.+|+.+
T Consensus 131 ~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 131 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 655556678888888 7777778899999999999999764
No 86
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=98.84 E-value=3.9e-10 Score=110.05 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654 187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP 262 (636)
Q Consensus 187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (636)
.|+.+. +++.++|.+|++..++. | ..++|. ++ .|.+.++ ++-|.+-|.|+. ..+++|..
T Consensus 70 ggGV~~-AI~~aaG~~l~~ec~~l~~~~g-~~~~G~-a~--------iT~~~~L---~VIHtVGP~~~~---~~~~~L~~ 132 (193)
T 3ejg_A 70 GGGLAK-ALDVYTKGKLQRLSKEHIGLAG-KVKVGT-GV--------MVECDSL---RIFNVVGPRKGK---HERDLLIK 132 (193)
T ss_dssp CSHHHH-HHHHHTTTHHHHHHHHHHHHHC-SCCTTC-EE--------EEEETTE---EEEEEECCCSST---THHHHHHH
T ss_pred CchHHH-HHHHHhhHHHHHHHHHHHHHcC-CCCCCC-EE--------EecCCCe---eEEEecCCCCCc---hHHHHHHH
Confidence 466767 89999999999877653 4 456664 22 1333444 677777777753 45678999
Q ss_pred hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccC
Q 006654 263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT 322 (636)
Q Consensus 263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~ 322 (636)
||.+||.. .+|||||+||||+||||.++||++++++++++ .+.+++++..
T Consensus 133 ~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~~-----~V~fv~f~~~ 182 (193)
T 3ejg_A 133 AYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----EVKVFVYTDT 182 (193)
T ss_dssp HHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCSS-----CEEEEECSHH
T ss_pred HHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhcC-----eEEEEEcCHH
Confidence 99999984 26999999999999999999999999999972 5667665443
No 87
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.84 E-value=3.8e-09 Score=98.96 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=64.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-----------c--HHHHHHHHHHHHhCCCeEEEe-C--
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T--KVQCLTSASSALKKGKSVFLD-R-- 85 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-----------~--~~~~~~~~~~~L~~G~~VIID-~-- 85 (636)
.|+|.|+|||||||+|+.|++.++ +.+++.|.+.....+ . .......+...|.....+||+ +
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~ 79 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN--IPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG 79 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 589999999999999999999988 567888877422111 0 111223344456544556665 3
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+....+..+ ...+ .+|+|++|.+++.+|+..|..
T Consensus 80 ~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~r~~ 115 (168)
T 2pt5_A 80 LGANEEALNFM---KSRG---TTVFIDIPFEVFLERCKDSKE 115 (168)
T ss_dssp HHTCHHHHHHH---HTTS---EEEEEECCHHHHHHHCBCTTC
T ss_pred EeCCHHHHHHH---HcCC---EEEEEECCHHHHHHHHhCCCC
Confidence 23444444433 2222 488999999999999988753
No 88
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=98.83 E-value=4.2e-10 Score=122.84 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=61.1
Q ss_pred cccccccchhh-cccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEEEEecc
Q 006654 246 SLLSDAAGEEV-KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLVDL 321 (636)
Q Consensus 246 ~~~~~~~~~~~-~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~-~~~v~~~~ 321 (636)
-++|..+.+.. .++|..||.++|++|.+++++|||||.||||+||||++ ++.|+++++.+|+.+++- +.+|+.|.
T Consensus 412 GPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~IvcfDK 488 (670)
T 4gua_A 412 GPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTIYCLDK 488 (670)
T ss_dssp CCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEEECSCH
T ss_pred CCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEEEEecC
Confidence 35555444433 46899999999999999999999999999999999987 589999999999998753 45555543
No 89
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.83 E-value=1.7e-08 Score=111.43 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=71.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC------------CCc-HHH--------HHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK------------SGT-KVQ--------CLTSAS 72 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~------------~~~-~~~--------~~~~~~ 72 (636)
..++.+|+|+|+|||||||++++|++.++ .+...++.|.++... .+. ... .+..+.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999998764 235556655554210 111 011 112224
Q ss_pred HHH--hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcc
Q 006654 73 SAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRI 126 (636)
Q Consensus 73 ~~L--~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p-~e~l~~R~~~R~ 126 (636)
..+ ..|..+|+|.+|...+.|..|.++ ++.+..+..+.+.++ .+++.+|...|.
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~ 173 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK 173 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence 455 456789999999999999999888 766765554444445 555555655443
No 90
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.83 E-value=5.7e-08 Score=93.05 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=73.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC----CCc---H-------HHHHHHHHHHHhCCCeEEEeC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK----SGT---K-------VQCLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~----~~~---~-------~~~~~~~~~~L~~G~~VIID~ 85 (636)
..+++|+|+|||||||+++.|+...+ ....++.|.+.... ... . +.+...+...+..+..+|+|.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEee
Confidence 46899999999999999999998654 24678888775321 111 0 112233344456778899998
Q ss_pred CCCCHHHHHHHHHh-C--CCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 86 CNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 86 tn~~~~~R~~l~~l-~--~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
. .....+..+.++ + ..+..+.+++|.+|.+.+.+|...|...
T Consensus 81 ~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d 125 (189)
T 2bdt_A 81 I-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD 125 (189)
T ss_dssp C-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred c-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence 5 455555555454 3 3344567788999999999999988653
No 91
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.80 E-value=4.4e-08 Score=93.16 Aligned_cols=107 Identities=20% Similarity=0.326 Sum_probs=69.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCC---C-c---HHHHHHH---HHHHH-hCCCeEEEe
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-T---KVQCLTS---ASSAL-KKGKSVFLD 84 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~---~-~---~~~~~~~---~~~~L-~~G~~VIID 84 (636)
++.+|+|+|++||||||+++.|++.+ +.++..++.|.++.... + . ....+.. ....+ ..|..++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS 83 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 46789999999999999999999876 66677778887764321 1 1 1111111 12223 555444444
Q ss_pred CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
........+..+..+ ...+....+|+|++|.+++.+|+.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 84 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 443334445555555 44556667899999999999998654
No 92
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.77 E-value=7.5e-09 Score=100.57 Aligned_cols=126 Identities=17% Similarity=0.098 Sum_probs=72.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-----------------CCCCCcH---HHHH--------H
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KGKSGTK---VQCL--------T 69 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-----------------~~~~~~~---~~~~--------~ 69 (636)
.++.+|+|.|+|||||||+|+.|++.++... ++.|.++ .+..... ..++ .
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~--~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN--VEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999876221 2212111 1110111 0111 1
Q ss_pred HHHHHHhCCCeEEEeCCCCCH----HHH----HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHH
Q 006654 70 SASSALKKGKSVFLDRCNLER----EQR----TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA 139 (636)
Q Consensus 70 ~~~~~L~~G~~VIID~tn~~~----~~R----~~l~~-l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~e 139 (636)
.+...+..|..||+|+++... ..+ ..|+. + ......-.+|+|++|.+++.+|+..|..+ . . ..+
T Consensus 86 ~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r---~--~-~~~ 159 (212)
T 2wwf_A 86 EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI---Y--E-KVE 159 (212)
T ss_dssp HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSST---T--C-SHH
T ss_pred HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCccc---c--c-HHH
Confidence 345566788899999865431 111 23332 2 22122235889999999999998765321 1 1 245
Q ss_pred HHHHHHhhhcCC
Q 006654 140 VVNRMLQKKELP 151 (636)
Q Consensus 140 vi~rm~~~fe~P 151 (636)
...++...|+.+
T Consensus 160 ~~~~~~~~~~~~ 171 (212)
T 2wwf_A 160 TQKKIYETYKHF 171 (212)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHH
Confidence 556665555443
No 93
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.76 E-value=5.5e-08 Score=97.28 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=75.9
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-------------hhhcCCC-CCcHHH-HH----------HH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-------------DTINKGK-SGTKVQ-CL----------TS 70 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-------------D~ir~~~-~~~~~~-~~----------~~ 70 (636)
...+..+|++.|+|||||||+++.|++.++..+.++.. +.+.++. ...... ++ ..
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 101 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLK 101 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCC
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999987521112211 1111221 111111 11 11
Q ss_pred HHHHHhCCCeEEEe----------CC--CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCh
Q 006654 71 ASSALKKGKSVFLD----------RC--NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA 137 (636)
Q Consensus 71 ~~~~L~~G~~VIID----------~t--n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp 137 (636)
+..+|..|..||+| +. ++.......+..+ .....+-.+++|++|.+++.+|+..|...... .+...
T Consensus 102 i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr-~e~~~ 180 (229)
T 4eaq_A 102 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR-LDQED 180 (229)
T ss_dssp CHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C-CCHHH
T ss_pred HHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc-hhhhh
Confidence 23566789999999 54 3444444444333 22223336889999999999999999653211 11124
Q ss_pred HHHHHHHHhhhcC
Q 006654 138 AAVVNRMLQKKEL 150 (636)
Q Consensus 138 ~evi~rm~~~fe~ 150 (636)
.+..++....|+.
T Consensus 181 ~~~~~rv~~~y~~ 193 (229)
T 4eaq_A 181 LKFHEKVIEGYQE 193 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555665555543
No 94
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.76 E-value=5.4e-09 Score=98.45 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=67.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-cHHHH------------HHHHHHHHhCCCeEEEeC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TKVQC------------LTSASSALKKGKSVFLDR 85 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~~~~~------------~~~~~~~L~~G~~VIID~ 85 (636)
++.+|+|+|+|||||||+++.|+..++ +.+++.|.+.....+ ....+ ...+...+....++|+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~--~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~ 80 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLAT 80 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEEC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 456799999999999999999999988 667888776432111 11100 112233444455666652
Q ss_pred ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654 86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK 147 (636)
Q Consensus 86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~ 147 (636)
..+....+..+. ..+. ++++++|.+++.+|+..|..++.........+.+..++..
T Consensus 81 ~~~~~~~~~~~~~l~---~~~~---~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~ 139 (173)
T 1kag_A 81 GGGSVKSRETRNRLS---ARGV---VVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANE 139 (173)
T ss_dssp CTTGGGSHHHHHHHH---HHSE---EEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHH
T ss_pred CCeEEecHHHHHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHH
Confidence 333334443332 2232 7889999999999999886544321112214555555544
No 95
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.75 E-value=2.3e-08 Score=93.95 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=63.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-H------------HHHHHHHHHHHhCCCeEEEeCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-K------------VQCLTSASSALKKGKSVFLDRC 86 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-~------------~~~~~~~~~~L~~G~~VIID~t 86 (636)
..+|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+. . ......+...|. +..+||+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g 78 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATG 78 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECC
Confidence 34689999999999999999999998 6778888775321110 0 011123334455 445666632
Q ss_pred ---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH--hc
Q 006654 87 ---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV--KR 125 (636)
Q Consensus 87 ---n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~--~R 125 (636)
.+....+..+.. .+ .+|+|++|.+++.+|+. .|
T Consensus 79 ~~~~~~~~~~~~l~~---~~---~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 79 GGMVLLEQNRQFMRA---HG---TVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp TTGGGSHHHHHHHHH---HS---EEEEEECCHHHHHHHHHHHHC
T ss_pred CcEEeCHHHHHHHHc---CC---eEEEEECCHHHHHHHHhhccC
Confidence 234444443311 12 48899999999999999 77
No 96
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.73 E-value=2.1e-08 Score=96.15 Aligned_cols=119 Identities=20% Similarity=0.246 Sum_probs=64.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh---------h----cCCCCCcHHH-H---------HHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT---------I----NKGKSGTKVQ-C---------LTSASSAL 75 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~---------i----r~~~~~~~~~-~---------~~~~~~~L 75 (636)
+|+|.|+|||||||+++.|++.+ +.++ +..+. + ..+....... + ...+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l 79 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV--ILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-E--EEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE--EEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988 7433 43211 1 1111111110 0 01133446
Q ss_pred hCCCeEEEeCC------------CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 006654 76 KKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (636)
Q Consensus 76 ~~G~~VIID~t------------n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~ 142 (636)
..|..||+|.. +........+... .....+-.+++|++|.+++.+|+..|... .. .+...
T Consensus 80 ~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~------~~-~~~~~ 152 (197)
T 2z0h_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRF------EK-REFLE 152 (197)
T ss_dssp ---CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCC------CC-HHHHH
T ss_pred hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcc------cH-HHHHH
Confidence 67888999953 2333333333333 22222235789999999999999999331 12 26666
Q ss_pred HHHhhhc
Q 006654 143 RMLQKKE 149 (636)
Q Consensus 143 rm~~~fe 149 (636)
++...|+
T Consensus 153 ~~~~~~~ 159 (197)
T 2z0h_A 153 RVREGYL 159 (197)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
No 97
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.71 E-value=5.8e-08 Score=94.30 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=59.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeeh--------hhh----cCCCCCcHH--H-H--------HHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ--------DTI----NKGKSGTKV--Q-C--------LTSA 71 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~--------D~i----r~~~~~~~~--~-~--------~~~~ 71 (636)
.++.+|+|+|+|||||||+|+.|++.++. ....+.. +.+ ..+...... . + ...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999987652 1211211 011 111111111 0 0 0234
Q ss_pred HHHHhCCCeEEEeCCCCCHH---------HHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 72 ~~~L~~G~~VIID~tn~~~~---------~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
...+..|..||+|...+..- .+..+..+ ......-.+|+|++|.+++.+|+..|
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 56678889999996321110 12222223 32222235889999999999998644
No 98
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.70 E-value=1.2e-07 Score=95.66 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=65.8
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHHcCCC--------eEEeehhhhcCCCC---------C--------c--HHHH
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTINKGKS---------G--------T--KVQC 67 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--------~~~Is~D~ir~~~~---------~--------~--~~~~ 67 (636)
....+|.+|.|.|+|||||||+|+.|++.++.+ ..+++.|.+..... + . ...+
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l 96 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELI 96 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHH
Confidence 344567899999999999999999999988732 23789888864211 0 0 1111
Q ss_pred HHHHHHHHh-------------------------CCCeEEEeCCCCC-HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHH
Q 006654 68 LTSASSALK-------------------------KGKSVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISR 121 (636)
Q Consensus 68 ~~~~~~~L~-------------------------~G~~VIID~tn~~-~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R 121 (636)
...+ +.+. ....||+|+..+. ... +... .+ .+|+|++|.+++.+|
T Consensus 97 ~~~L-~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~---~~~~--~d---~vi~l~~~~e~~~~R 167 (252)
T 1uj2_A 97 LKTL-KEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQE---VRDL--FQ---MKLFVDTDADTRLSR 167 (252)
T ss_dssp HHHH-HHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHH---HHHH--CS---EEEEEECCHHHHHHH
T ss_pred HHHH-HHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHH---HHHh--cC---eeEEEeCCHHHHHHH
Confidence 2222 2232 2346899996543 222 2222 12 378999999999999
Q ss_pred HHhcc
Q 006654 122 SVKRI 126 (636)
Q Consensus 122 ~~~R~ 126 (636)
+..|.
T Consensus 168 ~~~R~ 172 (252)
T 1uj2_A 168 RVLRD 172 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99885
No 99
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.69 E-value=1.1e-07 Score=91.11 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=65.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH-cCCCeEEeehhhhcCC--C-----------CC---cHHHHHHHHHHHHhCCCeE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS-SARPWARICQDTINKG--K-----------SG---TKVQCLTSASSALKKGKSV 81 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~-~~~~~~~Is~D~ir~~--~-----------~~---~~~~~~~~~~~~L~~G~~V 81 (636)
++.+|+|+|+|||||||+++.|++. ++ +.+++.|.+... . .. ........+...+..+.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~~ 86 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNH 86 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCCE
Confidence 4568999999999999999999999 67 778898765311 0 00 1122234444555345578
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
|+|..+... +.... .-.+|+|++|.+++.+|+..|.
T Consensus 87 vi~~~~~~~--------~~~~~-~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 87 VVDYHSSEL--------FPERW-FHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp EEECSCCTT--------SCGGG-CSEEEEEECCHHHHHHHHHHTT
T ss_pred EEeCchHhh--------hhhcc-CCEEEEEECCHHHHHHHHHhCC
Confidence 888754311 11110 1148899999999999999995
No 100
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.68 E-value=1.9e-07 Score=90.09 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=60.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-CC----CCC------c---HHHHH----------------
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KG----KSG------T---KVQCL---------------- 68 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~~----~~~------~---~~~~~---------------- 68 (636)
+..++.|+|++||||||+++.|+..++ ...++...+. .. ..+ . .....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY 83 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence 356899999999999999999998764 2233221111 00 000 0 01111
Q ss_pred ----HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 69 ----TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 69 ----~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+.+.+..|..+|+|. .+..+..+ ........++++.++.+++.+|+.+|..
T Consensus 84 ~~~~~~i~~~l~~g~~vi~d~------~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~ 141 (205)
T 3tr0_A 84 GTEKDWVLRQLKAGRDVLLEI------DWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQ 141 (205)
T ss_dssp EEEHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTT
T ss_pred cchHHHHHHHHHcCCeEEEEE------CHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCC
Confidence 35667788999999997 22222223 2222223344445579999999999965
No 101
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.68 E-value=7.9e-08 Score=108.75 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=80.0
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCCCC----cH-HH------HHHHHHHHHhCCCe
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKSG----TK-VQ------CLTSASSALKKGKS 80 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~~~----~~-~~------~~~~~~~~L~~G~~ 80 (636)
...++.+|+|+|+|||||||+|+.|++.++ .++.+++.|.++.+..+ .. +. +...+...+..|..
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~ 471 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAA 471 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCE
Confidence 345678999999999999999999999875 56788999988643211 11 11 11345556678889
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
||+|..+..+..|..+.++ ...+ .+.+|||++|.++|.+|.
T Consensus 472 VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 472 VIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence 9999877778888888777 6544 467899999999999994
No 102
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.65 E-value=1.4e-08 Score=96.18 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=61.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEe-CCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLD-RCN 87 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID-~tn 87 (636)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+.....+ . .......+.+.+.....+|++ +..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC--CCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 588999999999999999999998 677898887432111 0 011122333445545566666 322
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 88 LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 88 ~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
.... +. ++..+ .+|+|++|.+++.+|+..|.
T Consensus 84 ~~~~-~~----l~~~~---~~i~l~~~~e~~~~R~~~r~ 114 (175)
T 1via_A 84 FVNV-SN----LEKAG---FCIYLKADFEYLKKRLDKDE 114 (175)
T ss_dssp GGGS-TT----GGGGC---EEEEEECCHHHHTTCCCGGG
T ss_pred Eehh-hH----HhcCC---EEEEEeCCHHHHHHHHhccc
Confidence 2111 21 32222 47899999999999998874
No 103
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.65 E-value=6.3e-08 Score=92.04 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=65.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CC----CcHHHHHHHHHHHHhCCCeEEEeC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KS----GTKVQCLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~----~~~~~~~~~~~~~L~~G~~VIID~ 85 (636)
++.+|+|+|+|||||||+++.|++.++ +.+++.|.+... .. .....+...+...+..|. +|+|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~vv~~ 86 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGG-VIVDY 86 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCC-EEEEC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCC-EEEEe
Confidence 456789999999999999999999998 667887765211 00 112334555666666664 55676
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
.+... +.. .....+|+|++|.+++.+|+..|..
T Consensus 87 ~~~~~--------~~~-~~~~~vi~L~~~~e~l~~R~~~r~~ 119 (180)
T 3iij_A 87 HGCDF--------FPE-RWFHIVFVLRTDTNVLYERLETRGY 119 (180)
T ss_dssp SCCTT--------SCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred chhhh--------cch-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence 43211 010 0112488999999999999999953
No 104
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.65 E-value=3.1e-07 Score=89.28 Aligned_cols=131 Identities=14% Similarity=0.212 Sum_probs=77.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeE-Eee--------------------hhhh----cCCCCCcHH--------HHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC--------------------QDTI----NKGKSGTKV--------QCL 68 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is--------------------~D~i----r~~~~~~~~--------~~~ 68 (636)
.|+|+||+||||||++++|.+.++..+. .++ .+.+ .++.+..+. ...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 4899999999999999999988642221 111 1111 011100000 012
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 69 ~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
..+...+.+|+.+|+|. .++....+ ...+... .++.+.++.+++.+|+..|+. +..+++-+|+.+
T Consensus 83 ~~v~~~l~~g~~vil~i------d~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-------e~~e~i~~Rl~~ 149 (186)
T 1ex7_A 83 ASVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSA 149 (186)
T ss_dssp HHHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-------SCHHHHHHHHHH
T ss_pred ceeeehhhCCCEEEecC------CHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHHHH
Confidence 55677889999999998 45555555 4444333 344456678999999999976 345566666654
Q ss_pred hhcCCCc--cCCccEEEEeCC
Q 006654 147 KKELPKL--SEGFSRITLCQN 165 (636)
Q Consensus 147 ~fe~P~~--~Egfd~Viii~~ 165 (636)
...+... ...|+.+++-++
T Consensus 150 a~~e~~~~~~~~fD~vIvNdd 170 (186)
T 1ex7_A 150 AQAELAYAETGAHDKVIVNDD 170 (186)
T ss_dssp HHHHHHHHTTTCSSEEEECSS
T ss_pred HHHHHhhccccCCcEEEECcC
Confidence 3222111 224787755443
No 105
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.62 E-value=1.5e-07 Score=89.43 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=62.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh------cCCCCCc---------H--HHHH----HHHHHHH-
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI------NKGKSGT---------K--VQCL----TSASSAL- 75 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i------r~~~~~~---------~--~~~~----~~~~~~L- 75 (636)
.+|+|.|+|||||||+|+.|++.++ ..+.+++.|.+ +...... . .... ..+...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999875 23667775443 2221111 1 1111 2234455
Q ss_pred -hCCCeEEEeCCCCCHHH--------HHHHHHhCCCCCeEEEEEEeCCHHHHHHH-HHh--cc
Q 006654 76 -KKGKSVFLDRCNLEREQ--------RTDFVKLGGPEVDVHAVVLDLPAKLCISR-SVK--RI 126 (636)
Q Consensus 76 -~~G~~VIID~tn~~~~~--------R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R-~~~--R~ 126 (636)
..|..||+|++.....+ +..+..+. . ..+|+|++|.+++.+| +.. |.
T Consensus 82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~-~---~~vi~l~~~~~~~~~rr~~~~~R~ 140 (194)
T 1nks_A 82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN-P---SVIFLLEADPKIILSRQKRDTTRN 140 (194)
T ss_dssp HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC-C---SEEEEEECCHHHHHHHHHHCTTTC
T ss_pred ccCCCEEEECCchhhccccccccCCCHHHHHhcC-C---CEEEEEeCCHHHHHHHHHhhcccC
Confidence 67889999985211111 22222221 1 2478999999998866 666 64
No 106
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.62 E-value=1.5e-07 Score=90.99 Aligned_cols=107 Identities=19% Similarity=0.095 Sum_probs=65.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCC--eEEeeh---hhhc----CCC----CCcH-HHHH----------HHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ---DTIN----KGK----SGTK-VQCL----------TSASSAL 75 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is~---D~ir----~~~----~~~~-~~~~----------~~~~~~L 75 (636)
+.+|+|.|+|||||||+|+.|++.++.. +..... +.++ .+. .... ..++ ..+...+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l 83 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML 83 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988742 322211 1111 111 1111 1111 1223456
Q ss_pred hCCCeEEEeCCCCCHHHH--------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH-hcc
Q 006654 76 KKGKSVFLDRCNLEREQR--------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV-KRI 126 (636)
Q Consensus 76 ~~G~~VIID~tn~~~~~R--------~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~-~R~ 126 (636)
..|..||+|+++++...+ ..+..+ ......-.+|+|++|.+++.+|+. .|.
T Consensus 84 ~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 788999999965543211 122233 222222257899999999999999 776
No 107
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.61 E-value=8e-08 Score=94.19 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=69.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------------------EEeehhhhcC----CCCCcH--------
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTINK----GKSGTK-------- 64 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------------------~~Is~D~ir~----~~~~~~-------- 64 (636)
.++.+|+|+||+||||||+++.|+..++..+ ..++.+.+.. +.+..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 3567899999999999999999998875211 1111111110 000000
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 006654 65 VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (636)
Q Consensus 65 ~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi~ 142 (636)
......+.+.+..|+.+|+|. .+.....+ ......+ +|++. ++.+++.+|+..|.. ...+++.+
T Consensus 86 g~~~~~i~~~l~~g~~vild~------~~~g~~~~~~~~~~~~-~i~i~~ps~~~l~~Rl~~R~~-------~~~e~i~~ 151 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEI------EVQGAMQVRKAMPEGI-FIFLTPPDLSELKNRIIGRGT-------ESMEVVEE 151 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEEC------CHHHHHHHHHHCTTSE-EEEEECTTTTTSSCC--------------CCHHHHH
T ss_pred CCcHHHHHHHHHcCCeEEEEe------eHHHHHHHHHhCCCeE-EEEEeCCCHHHHHHHHHhcCC-------CCHHHHHH
Confidence 000134677889999999998 22223233 2222223 44555 448899999998865 23455555
Q ss_pred HHHhhhcCCCccCCccEEEEeC
Q 006654 143 RMLQKKELPKLSEGFSRITLCQ 164 (636)
Q Consensus 143 rm~~~fe~P~~~Egfd~Viii~ 164 (636)
++.....+-.....|+.+++-+
T Consensus 152 Rl~~~~~e~~~~~~~d~vivN~ 173 (208)
T 3tau_A 152 RMETAKKEIEMMASYDYAVVND 173 (208)
T ss_dssp HHHHHHHHHHHGGGSSEEEECS
T ss_pred HHHHHHHHHHhhccCCEEEECc
Confidence 5554432212234567665543
No 108
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.58 E-value=1.4e-07 Score=106.25 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=78.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC-----CcHH------HHHHHHHHHHhCCCeEEE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-----GTKV------QCLTSASSALKKGKSVFL 83 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~-----~~~~------~~~~~~~~~L~~G~~VII 83 (636)
..+.+|+|+|+|||||||+|+.|++.++ ..+.+++.|.++.... ...+ .+...+...+..|..||+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~ 449 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC 449 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4568899999999999999999998764 4567889998864211 1111 122345566788999999
Q ss_pred eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
|.++..+..|..+.++ .+. .+.+|+|++|.++|.+|+.
T Consensus 450 d~~~~~~~~r~~~~~~l~~~--d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 450 ALVSPYRSARNQVRNMMEEG--KFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp ECCCCCHHHHHHHHTTSCTT--CEEEEEEECCGGGHHHHCC
T ss_pred EcCCCCHHHHHHHHHHhhcC--CEEEEEEeCCHHHHHHHhh
Confidence 9988888888888777 542 3678899999999999975
No 109
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.57 E-value=3.3e-07 Score=94.38 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=69.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-----CCC-----------------CC--cHHH-------
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KGK-----------------SG--TKVQ------- 66 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-----~~~-----------------~~--~~~~------- 66 (636)
+.|.+|+|+|+|||||||+|+.|+ .++ +.+|+.|.+. .+. .+ .+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg--~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~ 149 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLG--AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG 149 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHT--CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCC--CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence 457899999999999999999999 567 6778887761 000 00 0000
Q ss_pred -------------------HHHHHHHHHhCC-CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 67 -------------------CLTSASSALKKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 67 -------------------~~~~~~~~L~~G-~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
....+.+....+ ..||+|+..+.... |... .+ .+|++++|.+++.+|+..|.
T Consensus 150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~~~--~d---~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---WQSM--VH---EVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---GGGG--CS---EEEEEECCHHHHHHHHHHHH
T ss_pred CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---hHHh--CC---EEEEEcCCHHHHHHHHHHcC
Confidence 001111222333 57999996544321 2111 12 37899999999999999985
Q ss_pred cccCCCCCCChHHHHHHHHhh
Q 006654 127 EHEGNLQGGKAAAVVNRMLQK 147 (636)
Q Consensus 127 ~~~~~~~~~vp~evi~rm~~~ 147 (636)
. ...+++..++..+
T Consensus 222 g-------~s~e~~~~ri~~q 235 (281)
T 2f6r_A 222 G-------LSEAAAQSRLQSQ 235 (281)
T ss_dssp C-------CCHHHHHHHHHTS
T ss_pred C-------CCHHHHHHHHHHc
Confidence 3 1345555666555
No 110
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.55 E-value=5e-07 Score=90.49 Aligned_cols=105 Identities=20% Similarity=0.304 Sum_probs=68.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHh--C
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALK--K 77 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~--~ 77 (636)
+|.+|+|+|+|||||||+++.|++.++ +..++.+.+ +.+ .......+...+...+. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg--~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG--LQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC--CCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999988 444555433 111 11112222233333343 4
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 78 G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
+..+|+|+.+....+...+..+...+ .+++|++|.+++.+|+..|...
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~l~r~~~r~~~ 151 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVD---LVISLNIPFETLKDRLSRRWIH 151 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCC---EEEEEECCHHHHHHHHHTEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCC---EEEEEECCHHHHHHHHHcCCCc
Confidence 56788999766654333333222233 4789999999999999888643
No 111
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.54 E-value=1.1e-07 Score=92.08 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=28.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.+|.|+|+|||||||+++.|++ ++ +.+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG--AYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC--CEEEEccHH
Confidence 3689999999999999999999 77 667887665
No 112
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.53 E-value=5.7e-08 Score=94.38 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=29.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+.+|.|+|+|||||||+++.|+. +| +.+++.|.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg--~~~id~d~~ 35 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LG--VPLVDADVV 35 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TT--CCEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CC--CcccchHHH
Confidence 46799999999999999999987 77 667888776
No 113
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.51 E-value=1.5e-07 Score=88.38 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=57.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-----------c--HHHHHHHHHHHHhCCCeE-EEeC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T--KVQCLTSASSALKKGKSV-FLDR 85 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-----------~--~~~~~~~~~~~L~~G~~V-IID~ 85 (636)
...|+|.|+|||||||+|+.|++.++ +.+++.|.+.....+ . .......+...+.....+ |++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~ 84 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK--LEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVIST 84 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEEC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 35689999999999999999999998 556888776432111 1 001112222333333334 5543
Q ss_pred ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
..+. .. +... -.+|+|++|.+++.+|+..|
T Consensus 85 g~g~~~~-~~------l~~~---~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 85 GGGIVMH-EN------LKGL---GTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp CGGGGGC-GG------GTTS---EEEEEEECCHHHHHHHHCC-
T ss_pred CCCEech-hH------HhcC---CEEEEEECCHHHHHHHHhcc
Confidence 1111 11 3222 24889999999999999988
No 114
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.51 E-value=2.7e-07 Score=88.56 Aligned_cols=133 Identities=14% Similarity=0.194 Sum_probs=53.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC---------------------CeEEeehhhhc----CCCCCc--------HHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTIN----KGKSGT--------KVQ 66 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~---------------------~~~~Is~D~ir----~~~~~~--------~~~ 66 (636)
+.+++|+||+||||||+++.|+..++. .+...+.+.+. .+.... +..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 356899999999999999999976531 01111111110 000000 000
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654 67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNRML 145 (636)
Q Consensus 67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~-e~l~~R~~~R~~~~~~~~~~vp~evi~rm~ 145 (636)
....+.+.+..|+.+|+|.. ......+. ...+....+|++.+|. +++.+|+..|... ..+.+.+|+.
T Consensus 81 ~~~~i~~~l~~g~~~il~~~---~~g~~~l~--~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~-------~~~~i~~rl~ 148 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDID---MQGVKSVK--AIPELNARFLFIAPPSVEDLKKRLEGRGTE-------TEESINKRLS 148 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECC---HHHHHHHH--TCGGGCCEEEEEECSCC------------------------------
T ss_pred cHHHHHHHHHcCCeEEEEEc---HHHHHHHH--HhcCCCeEEEEEECcCHHHHHHHHHhcCCC-------CHHHHHHHHH
Confidence 01456677889999999862 12222222 2122334467777755 9999999998763 2233344555
Q ss_pred hhhcCCCcc--CCccEEEEeC
Q 006654 146 QKKELPKLS--EGFSRITLCQ 164 (636)
Q Consensus 146 ~~fe~P~~~--Egfd~Viii~ 164 (636)
....+-... ..|+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 149 AAQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ----------CCCCSEEEECS
T ss_pred HHHHHHHhhcccCCcEEEECc
Confidence 443222212 4566664433
No 115
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.51 E-value=7.7e-08 Score=92.57 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.4
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
..++.+|.|+|+|||||||+|+.|++. + +.+++.|.+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g--~~~id~d~~ 41 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-G--YPVLDLDAL 41 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-T--CCEEEHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-C--CEEEcccHH
Confidence 346789999999999999999999997 6 667888765
No 116
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=98.51 E-value=8.2e-09 Score=99.47 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=76.8
Q ss_pred CccCCCCCchhhHHHHHHHHhhc---CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhh
Q 006654 188 GSFGQKNPDAKIQLGIMKFLKKV---DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEV 264 (636)
Q Consensus 188 gc~~~~~~~~~v~~~i~k~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (636)
|+.+. +++.++|.+|.+-.++. ....++|. ++ + |...++ .+-|.+-+.|+. + ..+.|..||
T Consensus 50 gGv~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~-a~-i-------T~~~~l---~VIH~vgP~~~~--~-~~~~L~~~y 113 (174)
T 2vri_A 50 GGVAR-AIDILTEGQLQSLSKDYISSNGPLKVGA-GV-M-------LECEKF---NVFNVVGPRTGK--H-EHSLLVEAY 113 (174)
T ss_dssp SHHHH-HHHHHTTTHHHHHHHHHHHHHCSCCTTC-EE-E-------EECSSC---EEEEEECCCSST--T-HHHHHHHHH
T ss_pred CcHhH-HHHHHhhHHHHHHHHHHHHhcCCCCCCe-EE-E-------EECCCC---EEEEEcCCCCCc--c-hHHHHHHHH
Confidence 45656 78999988888766652 12445564 11 1 122222 666766677653 3 567889999
Q ss_pred hhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEecc
Q 006654 265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDL 321 (636)
Q Consensus 265 ~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~ 321 (636)
.+||... .|||||+||||+||||.++|++++++++.+ ..++++.++.
T Consensus 114 ~~~L~~~-----~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f~~ 160 (174)
T 2vri_A 114 NSILFEN-----GIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVYSS 160 (174)
T ss_dssp HHHHHSS-----SCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEECSH
T ss_pred HHHHhhC-----CcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEcCH
Confidence 9999862 399999999999999999999999999986 3566766543
No 117
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.51 E-value=3.6e-07 Score=88.88 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCC---------CC--------cHHHHHHHHHHHHh--
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGK---------SG--------TKVQCLTSASSALK-- 76 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~---------~~--------~~~~~~~~~~~~L~-- 76 (636)
-.++.+|.++|+|||||||+++.|++.+ + +.++++|.+.... .. ....+...+...+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 95 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA 95 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC
Confidence 3456789999999999999999999877 5 7788888764210 01 11223333333332
Q ss_pred -------------CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 77 -------------KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 77 -------------~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
....||+|+..... .+ .+. ...+ .++++++|.+++.+|+..|.
T Consensus 96 ~~~~~~~~~~~~~~~~~vi~eg~~~~~-~~-~~~--~~~d---~~i~l~~~~~~~~~R~~~R~ 151 (207)
T 2qt1_A 96 RHSVVSTDQESAEEIPILIIEGFLLFN-YK-PLD--TIWN---RSYFLTIPYEECKRRRSTRV 151 (207)
T ss_dssp TTSSCCC-----CCCCEEEEECTTCTT-CG-GGT--TTCS---EEEEEECCHHHHHHHHHHSC
T ss_pred CCCCcCCCeeecCCCCEEEEeehHHcC-cH-HHH--HhcC---eeEEEECCHHHHHHHHHHcC
Confidence 24578999954332 11 111 2222 37899999999999998885
No 118
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.47 E-value=2.9e-07 Score=93.48 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=63.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC-C-c------------HHHHHH-HHHHHHhC-CCeEEE
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-G-T------------KVQCLT-SASSALKK-GKSVFL 83 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~-~-~------------~~~~~~-~~~~~L~~-G~~VII 83 (636)
...|+|+|+|||||||+++.|++.++ +.+++.|.+..... + . ...... .+.+.+.. ...||.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via 125 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVS 125 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC--CcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence 45799999999999999999999998 67789887753221 1 1 011112 22333333 345555
Q ss_pred eC--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 84 DR--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 84 D~--tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
++ +......+..+ . .+ .+|||++|.+++.+|+..|
T Consensus 126 ~GgG~v~~~~~~~~l---~-~~---~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 126 TGGGAVIRPINWKYM---H-KG---ISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp CCGGGGGSHHHHHHH---T-TS---EEEEEECCHHHHHHHHHC-
T ss_pred cCCCeecCHHHHHHH---h-CC---cEEEEECCHHHHHHHHhhc
Confidence 44 45555555444 3 23 3889999999999999864
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.46 E-value=1.7e-06 Score=82.53 Aligned_cols=124 Identities=23% Similarity=0.215 Sum_probs=76.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------CCCc----HHHHH----HHHHHHHhCCCeE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------KSGT----KVQCL----TSASSALKKGKSV 81 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------~~~~----~~~~~----~~~~~~L~~G~~V 81 (636)
.+..+++|+|+|||||||+++.|+...+.+.++++.|.+... .... ...+. ..+......|..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ 86 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFV 86 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCeE
Confidence 346789999999999999999999876555678888776321 1111 11111 1122234556778
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 006654 82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL 150 (636)
Q Consensus 82 IID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~ 150 (636)
++|... ....+..+..+ +..+..+++..+.++++.|+..|.... ....+.++.+.+.+..
T Consensus 87 ~~~~~~-~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~-----lld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 87 ILDGVV-RPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFAD 146 (191)
T ss_dssp EECSCC-CTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTC
T ss_pred EEeccC-cHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCc-----cCCHHHHHHHHHHHhc
Confidence 889843 33333333222 234567899999999999999985321 1234555666665544
No 120
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.45 E-value=1.6e-06 Score=85.85 Aligned_cols=109 Identities=19% Similarity=0.245 Sum_probs=66.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh-----------hhhcCCC---CCcHH-----------HHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----------DTINKGK---SGTKV-----------QCLTS 70 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~-----------D~ir~~~---~~~~~-----------~~~~~ 70 (636)
+..+|++.|++||||||+++.|++.+. ..+..+.. +.+.++. ..... .+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~ 84 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGV 84 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998764 22222210 1122221 11111 11234
Q ss_pred HHHHHhCCCeEEEeCCC------------CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 71 ASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 71 ~~~~L~~G~~VIID~tn------------~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
+..+|.+|..||+|... +..++-..+... .....+-.+|+|++|.+++.+|+..|..
T Consensus 85 i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~ 154 (213)
T 4edh_A 85 IRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR 154 (213)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred HHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 56678899999999832 112222222222 1222233689999999999999999853
No 121
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.44 E-value=9.9e-07 Score=84.93 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=58.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehh------------hhcCC-CCCcH-HHH---------HHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQD------------TINKG-KSGTK-VQC---------LTSASSA 74 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D------------~ir~~-~~~~~-~~~---------~~~~~~~ 74 (636)
++.+|+|.|+|||||||+++.|++.+ +.++..++.. .+..+ ..... ..+ ...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~ 82 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ 82 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999987 3333322210 01111 11111 111 1223456
Q ss_pred HhCCCeEEEeCCCCCHHH--------HHHHHHh-CCCCCeEEEEEEeCCHHHHHH
Q 006654 75 LKKGKSVFLDRCNLEREQ--------RTDFVKL-GGPEVDVHAVVLDLPAKLCIS 120 (636)
Q Consensus 75 L~~G~~VIID~tn~~~~~--------R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~ 120 (636)
+..|..||+|++.++... +..+..+ ......-.+|+|++|.+++.+
T Consensus 83 l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 83 LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence 678889999985443211 1112222 221112247899999998877
No 122
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.43 E-value=2.2e-07 Score=88.28 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=60.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeehhhh-c-----CCCC-------C-cH---HHHHHHH---HHHHh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI-N-----KGKS-------G-TK---VQCLTSA---SSALK 76 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~D~i-r-----~~~~-------~-~~---~~~~~~~---~~~L~ 76 (636)
+.+|+|.|+|||||||+++.|++.++. .+.+++.|.+ + .+.. . .. ..+...+ ...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA 82 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence 468999999999999999999998762 1556776543 1 1110 0 01 1111112 22234
Q ss_pred CCCeEEEeCCCCCHHHH--------HHHHHhCCCCCeEEEEEEeCCHHHHHH-HHHh--ccc
Q 006654 77 KGKSVFLDRCNLEREQR--------TDFVKLGGPEVDVHAVVLDLPAKLCIS-RSVK--RIE 127 (636)
Q Consensus 77 ~G~~VIID~tn~~~~~R--------~~l~~l~~~g~~v~vV~Ld~p~e~l~~-R~~~--R~~ 127 (636)
.+..||+|+........ ..+..+ .. .+ +|+|++|.+++.+ |+.. |..
T Consensus 83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~--~~-~i~l~~~~~~~~~rRl~~~~R~r 140 (192)
T 1kht_A 83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NP--DL-IIVVETTGDEILMRRMSDETRVR 140 (192)
T ss_dssp TTSCEEEECCSEEEETTEEEESSCHHHHHHH-CC--SE-EEEEECCHHHHHHHHHTSSSCSS
T ss_pred cCCeEEEccceeccccccccccCcHHHHhcc-CC--CE-EEEEeCCHHHHHHHHhhhcccCC
Confidence 56689999854211110 111111 12 22 8899999999996 8877 543
No 123
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.42 E-value=6.3e-07 Score=85.95 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=56.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh--------hhhcCCCCC-cH-HH------HHHHHHHHHhCCCeEEEeC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ--------DTINKGKSG-TK-VQ------CLTSASSALKKGKSVFLDR 85 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~--------D~ir~~~~~-~~-~~------~~~~~~~~L~~G~~VIID~ 85 (636)
+|+|.|+|||||||+++.|++.++. .++.. +.+...... .. .+ ....+...+..|. +|+|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-vi~d~ 78 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY--EIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLEN-IIFDR 78 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC--EEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------C-EEEES
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC--cEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCC-EEEEe
Confidence 6899999999999999999999883 33331 111101000 00 00 0122223445554 99999
Q ss_pred CCCCHH---------------HHHHHH---H-h-CCC-------CCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 86 CNLERE---------------QRTDFV---K-L-GGP-------EVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 86 tn~~~~---------------~R~~l~---~-l-~~~-------g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
+.+... .+..+. . . ... ...-.+|+|++|.+++.+|+..|.
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 146 (205)
T 2jaq_A 79 TLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG 146 (205)
T ss_dssp CTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 766421 111111 1 2 211 122268999999999999998874
No 124
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.39 E-value=1.7e-06 Score=83.41 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
+|.|.|+|||||||+|+.|++.++ +.+++.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg--~~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG--VPYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--CceeccchHH
Confidence 799999999999999999999998 6668887764
No 125
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.39 E-value=2.8e-06 Score=83.59 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=63.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCC--eEEeeh-------hhhc----CCC-CCcH-----------HHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ-------DTIN----KGK-SGTK-----------VQCLTSASS 73 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is~-------D~ir----~~~-~~~~-----------~~~~~~~~~ 73 (636)
|...|++-|+.||||||+++.|++.+... +..... ..++ ++. .... +.+...+..
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p 80 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP 80 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999887432 222210 1121 221 1111 112244567
Q ss_pred HHhCCCeEEEeCCCC------------CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654 74 ALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH 128 (636)
Q Consensus 74 ~L~~G~~VIID~tn~------------~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~ 128 (636)
+|.+|..||.|.... ....-..+... ...-.+=.+++|++|.+++.+|+.+|...
T Consensus 81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~ 148 (205)
T 4hlc_A 81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD 148 (205)
T ss_dssp HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC----
T ss_pred HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCc
Confidence 889999999997321 11222222222 11111225889999999999999988653
No 126
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.38 E-value=1.7e-06 Score=84.85 Aligned_cols=36 Identities=22% Similarity=0.529 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
+.+|.|+|+|||||||+++.|++.++ +.+++.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i~ 40 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAIY 40 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCccee
Confidence 45799999999999999999999988 6778876653
No 127
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.34 E-value=2.6e-06 Score=82.04 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=47.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeE-EeehhhhcCCC------C----CcHH---H------------------
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTINKGK------S----GTKV---Q------------------ 66 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is~D~ir~~~------~----~~~~---~------------------ 66 (636)
++.+|+|+|+|||||||+++.|+..+..... .+. +..+... . .... .
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSIS-MTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCC-EECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecc-cccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 4568999999999999999999987621111 111 1111000 0 0000 0
Q ss_pred --HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 67 --~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
....+...+..|..||+|....... .+... ....+.++...++.+++.+|+..|..
T Consensus 84 g~~~~~i~~~l~~g~~vv~d~~~~~~~---~~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~ 141 (207)
T 2j41_A 84 GTPVQYVKDTMDEGHDVFLEIEVEGAK---QVRKK--FPDALFIFLAPPSLEHLRERLVGRGT 141 (207)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHH---HHHHH--CTTSEEEEEECCC-------------
T ss_pred CCCHHHHHHHHHcCCeEEEEECHHHHH---HHHHh--cCCeEEEEEECCCHHHHHHHHHhcCC
Confidence 0134566678899999998533222 22222 11122333334678899999998864
No 128
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.32 E-value=1.8e-06 Score=84.53 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=30.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
++.+|+|+|++||||||+++.|++ ++ +.+++.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg--~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG--INVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC--CEEEEccHH
Confidence 467899999999999999999988 77 677888765
No 129
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.31 E-value=1.1e-06 Score=88.10 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=69.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc-------CCCeEEeeh-----------hhhcCCCCCcHH-----------HHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQ-----------DTINKGKSGTKV-----------QCLT 69 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-------~~~~~~Is~-----------D~ir~~~~~~~~-----------~~~~ 69 (636)
+..+|++.|++||||||+++.|++.+ +..+..+.. ..+.++...... .+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~ 103 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL 103 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999876 322222210 111112111111 1123
Q ss_pred HHHHHHhCCCeEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 006654 70 SASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK 136 (636)
Q Consensus 70 ~~~~~L~~G~~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~v 136 (636)
.+..+|.+|..||+|....+ .++-..+... .....+-.+|+|++|.+++.+|+..|.... +-...
T Consensus 104 ~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~d--r~E~~ 181 (227)
T 3v9p_A 104 VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPD--KFESE 181 (227)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC-----CCH
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCcc--chhhh
Confidence 45677889999999973222 2222222222 111223368899999999999999885211 10111
Q ss_pred hHHHHHHHHhhh
Q 006654 137 AAAVVNRMLQKK 148 (636)
Q Consensus 137 p~evi~rm~~~f 148 (636)
..+..++..+.|
T Consensus 182 ~~ef~~rv~~~Y 193 (227)
T 3v9p_A 182 SDAFFARTRAEY 193 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 345555555544
No 130
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.27 E-value=2.6e-06 Score=85.81 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=60.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC---CC-eEEeeh-----------hhhcCC----CCCcHH-----------HHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RP-WARICQ-----------DTINKG----KSGTKV-----------QCL 68 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~-~~~Is~-----------D~ir~~----~~~~~~-----------~~~ 68 (636)
++.+|++.|++||||||+++.|++.+. .. ...+.. ..+..+ ...... .+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~ 105 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE 105 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999988764 22 212210 112111 111111 112
Q ss_pred HHHHHHHhCCCeEEEeCCC------------CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 69 TSASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 69 ~~~~~~L~~G~~VIID~tn------------~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+..+|.+|..||+|... +.......+... ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus 106 ~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~ 177 (236)
T 3lv8_A 106 NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE 177 (236)
T ss_dssp HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 3456688999999999732 222222222222 1111122588999999999999999863
No 131
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.26 E-value=4.9e-06 Score=82.39 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=72.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-----CC---------C--------C--cH-----------
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----GK---------S--------G--TK----------- 64 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-----~~---------~--------~--~~----------- 64 (636)
..-|.|+|.+||||||+++.|++ +| +.++|.|.+.. +. + + .+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g--~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RG--ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CC--CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 45689999999999999999987 77 77799887631 00 0 1 00
Q ss_pred -----------HHHHHHHHHHHhC-C-CeEEEeCCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 65 -----------VQCLTSASSALKK-G-KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 65 -----------~~~~~~~~~~L~~-G-~~VIID~tn~~~-~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
..+.+.+.+.+.. + ..+|+|..-+.+ .....+.+. ++++++|.++..+|+.+|..
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~--------vi~V~ap~e~r~~Rl~~Rdg--- 154 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARCDR--------VLVVDCPVDTQIARVMQRNG--- 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHCSE--------EEEEECCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccCCe--------EEEEECCHHHHHHHHHhcCC---
Confidence 0111233333322 2 358899965555 443344222 88999999999999999974
Q ss_pred CCCCCChHHHHHHHHhhh
Q 006654 131 NLQGGKAAAVVNRMLQKK 148 (636)
Q Consensus 131 ~~~~~vp~evi~rm~~~f 148 (636)
...+++..++..++
T Consensus 155 ----~s~eea~~ri~~Q~ 168 (210)
T 4i1u_A 155 ----FTREQVEAIIARQA 168 (210)
T ss_dssp ----CCHHHHHHHHHHSC
T ss_pred ----CCHHHHHHHHHHcC
Confidence 34567777777654
No 132
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.25 E-value=8.6e-06 Score=80.65 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=64.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC---C-CeEEeeh-----------hhhcCC------CCCcH-----------HHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA---R-PWARICQ-----------DTINKG------KSGTK-----------VQC 67 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~-~~~~Is~-----------D~ir~~------~~~~~-----------~~~ 67 (636)
..+|++.|++||||||+++.|++.+. . ....... ..+... ..... +.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV 82 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence 46899999999999999999988763 2 1221211 112211 11111 111
Q ss_pred HHHHHHHHhCCCeEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 68 ~~~~~~~L~~G~~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+..+|.+|..||.|....+ ..+-..+... .....+-.+|+|++|.+++.+|+.+|..
T Consensus 83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~ 155 (213)
T 4tmk_A 83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE 155 (213)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 2456678899999999983221 1221112121 1111222688999999999999999854
No 133
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.23 E-value=8.5e-07 Score=86.46 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=31.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.-.+|.|+|++||||||+|+.|++.+| +.+++.|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHH
Confidence 457899999999999999999999888 677898877
No 134
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.21 E-value=1.9e-05 Score=77.03 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=30.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
|.+|+|+|+|||||||+++.|++.++ +.+++.|.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS--MIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC--CceecCChH
Confidence 56799999999999999999999988 667887765
No 135
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.21 E-value=1.7e-06 Score=84.03 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=52.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC-----CC--c----------HHHHHHHHHHHH-
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SG--T----------KVQCLTSASSAL- 75 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~-----~~--~----------~~~~~~~~~~~L- 75 (636)
...+.+|.++|++||||||+++.|+..+ +..+..++.|.+.... .+ . ...+.+.+...+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 4567899999999999999999998764 3345566777664321 11 0 111111111111
Q ss_pred ------------------------hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 76 ------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 76 ------------------------~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
..+..||+|+..+....... + .+ .+|++++|.+++.+|+.+|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~---~--~d---~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRP---F--FD---FVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTTGG---G--CS---EEEEECCC------------
T ss_pred cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHHHh---h--cC---EEEEEeCCHHHHHHHHhcCC
Confidence 12456899996543222111 1 12 38899999999999999987
No 136
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.20 E-value=1.7e-05 Score=80.08 Aligned_cols=36 Identities=25% Similarity=0.534 Sum_probs=31.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
..+|.|+|++||||||+++.|++.++ +..++.+.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN--WRLLDSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC--CCcCCCCcee
Confidence 46899999999999999999999998 6677876664
No 137
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.19 E-value=3.3e-06 Score=95.07 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=60.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCC---C-CcH-H-----HHHHHH-HHHHhCCCeEE
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGK---S-GTK-V-----QCLTSA-SSALKKGKSVF 82 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~---~-~~~-~-----~~~~~~-~~~L~~G~~VI 82 (636)
.+..+|+|+|++||||||+++.|+..++ ..+..++.|.++... . ... + ..+..+ ......+..+|
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi 446 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAI 446 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 3567899999999999999999998874 224468888775311 1 111 1 111222 22234555566
Q ss_pred EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
..........|....++ +..+ .+..|++++|.++|.+|..
T Consensus 447 ~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 447 CAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC----------
T ss_pred EecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence 55543345666677677 6666 6778999999999999964
No 138
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.18 E-value=3.1e-05 Score=76.87 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=82.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC-Ce---EEeehhhhcCCC-------CCcHH---H-----------------
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PW---ARICQDTINKGK-------SGTKV---Q----------------- 66 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~---~~Is~D~ir~~~-------~~~~~---~----------------- 66 (636)
.+..+++|+||+||||||+.+.|...... .+ +.+..-..+.+. +.+.. .
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 34568999999999999999999987641 11 111110000000 00000 0
Q ss_pred ---HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 006654 67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN 142 (636)
Q Consensus 67 ---~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~ 142 (636)
-...+.+.|..|+.+|+| +....+..+.++ . . ...+++...+.+++.+|+..|+. +.++++.+
T Consensus 94 yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~-~--~~tI~i~th~~~~l~~Rl~~rG~-------~~~e~i~~ 160 (219)
T 1s96_A 94 YGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP-H--ARSIFILPPSKIELDRRLRGRGQ-------DSEEVIAK 160 (219)
T ss_dssp EEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT-T--CEEEEEECSSHHHHHHHHHTTSC-------SCHHHHHH
T ss_pred CCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc-C--CEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHH
Confidence 013567788899999999 788888888777 6 2 23444555677889999977763 45677777
Q ss_pred HHHhhhcCCCccCCccEEEEeC
Q 006654 143 RMLQKKELPKLSEGFSRITLCQ 164 (636)
Q Consensus 143 rm~~~fe~P~~~Egfd~Viii~ 164 (636)
++.+...+......|+.+++-+
T Consensus 161 rl~~a~~e~~~~~~~d~~i~Nd 182 (219)
T 1s96_A 161 RMAQAVAEMSHYAEYDYLIVND 182 (219)
T ss_dssp HHHHHHHHHTTGGGSSEEEECS
T ss_pred HHHHHHHHHhhccCCCEEEECc
Confidence 7765422222345678775443
No 139
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.17 E-value=5.5e-06 Score=81.07 Aligned_cols=98 Identities=10% Similarity=0.038 Sum_probs=62.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC--CCC----------CcH----H------------------
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--GKS----------GTK----V------------------ 65 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~--~~~----------~~~----~------------------ 65 (636)
..+|.|.|++||||||+|+.|+++++ +..+|.+.++. ... +.. .
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg--~~~~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN--IPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT--CCEECHHHHHHTTCC---------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC--cCEECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 35799999999999999999999999 55577665531 000 000 0
Q ss_pred HHHHHHHHHHh--CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 66 QCLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 66 ~~~~~~~~~L~--~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
.....+.+.|. ...++|+++.- - .+ -+... .....|||.+|.+++.+|+..|..
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~--g----~~-vl~~~-~~~~~V~L~A~~e~r~~R~~~~~~ 139 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRC--A----EE-ILSDN-PNMISAFILGDKDTKTKRVMEREG 139 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTT--H----HH-HTTTC-TTEEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCEEEEECC--c----ch-hcCCC-CCeEEEEEECCHHHHHHHHHHHhC
Confidence 12244444566 56678888731 1 11 12221 124578999999999999987743
No 140
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.14 E-value=1.3e-05 Score=84.61 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=67.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-----------------CCC---------C--C--cHHHH-
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KGK---------S--G--TKVQC- 67 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-----------------~~~---------~--~--~~~~~- 67 (636)
++.+|+|+||+||||||+|..|+++++ ...||.|.+. .+. . . +...+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~ 116 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFR 116 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC--CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHH
Confidence 446999999999999999999999988 6678876651 000 0 0 11222
Q ss_pred ---HHHHHHHHhCCCeEEEeCC-CCCHHHHH-HH-----H---------Hh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 68 ---LTSASSALKKGKSVFLDRC-NLEREQRT-DF-----V---------KL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 68 ---~~~~~~~L~~G~~VIID~t-n~~~~~R~-~l-----~---------~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+.+....|+.+|+-|. .+....-. .+ . .+ ....+...+|+|+++.++|.+|+..|..
T Consensus 117 ~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~~ 196 (339)
T 3a8t_A 117 SLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVD 196 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhcc
Confidence 2334445578887777653 22211100 00 0 01 1233567789999999999999999854
No 141
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.13 E-value=3.7e-05 Score=76.35 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=32.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
..+.+|.|+|+|||||||+++.|++.++ +.+++.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCee
Confidence 4566899999999999999999999988 6678877663
No 142
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.11 E-value=3e-06 Score=83.93 Aligned_cols=26 Identities=15% Similarity=0.529 Sum_probs=17.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHH-HHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVM-RSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~La-k~~ 44 (636)
+..++.|+|++||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999999 765
No 143
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.11 E-value=2.2e-05 Score=76.53 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=61.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh-------hhhc----CCCCCc----------HHHHHHHHHHHHhC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN----KGKSGT----------KVQCLTSASSALKK 77 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~-------D~ir----~~~~~~----------~~~~~~~~~~~L~~ 77 (636)
+|++-|+.||||||+++.|++.+ |..+..... ..++ ...... +.+....+..+|..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~ 81 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE 81 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 68899999999999999998765 333333220 1111 111111 12233667788899
Q ss_pred CCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 78 GKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 78 G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
|..||.|....+. ..-..+... ...-.+-.+++|++|.+++.+|...|.+
T Consensus 82 g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr 144 (197)
T 3hjn_A 82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR 144 (197)
T ss_dssp TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT
T ss_pred CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc
Confidence 9999999843222 111222222 1111122578999999999999766544
No 144
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.10 E-value=1.7e-06 Score=82.53 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=23.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+..+++|+||+||||||+++.|...++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998753
No 145
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.08 E-value=1.4e-07 Score=91.57 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=62.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCC---CeEEee---------hhhhcC---CCC-----CcH-HHHH---------HHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC---------QDTINK---GKS-----GTK-VQCL---------TSA 71 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is---------~D~ir~---~~~-----~~~-~~~~---------~~~ 71 (636)
+|++.|++||||||+++.|++.++. .+..+. .+.++. +.. ... ..++ ..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 81 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI 81 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHHH
Confidence 6899999999999999999988741 111121 222221 100 111 1111 123
Q ss_pred HHHHhCCCeEEEeCCCCCHHHH-------------HHHH-HhC----CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 72 SSALKKGKSVFLDRCNLEREQR-------------TDFV-KLG----GPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 72 ~~~L~~G~~VIID~tn~~~~~R-------------~~l~-~l~----~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
...+..|..||+|+........ ..|+ .+. .....-.+++|++|.+++.+|+..|..
T Consensus 82 ~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155 (214)
T ss_dssp HHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence 4445667889999976443111 1221 211 111334688999999999999999965
No 146
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=97.98 E-value=1.5e-06 Score=82.48 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred hcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 006654 256 VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (636)
Q Consensus 256 ~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~ 306 (636)
..+.+..|+..++.++++++++|||||+||||+||||.+++++||.+++.+
T Consensus 100 ~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 100 TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 356788899999999999999999999999999999999999999887653
No 147
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.97 E-value=3.3e-06 Score=85.46 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=26.8
Q ss_pred hhhhhhhcc-ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe
Q 006654 7 DTCKAKDEE-KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI 51 (636)
Q Consensus 7 ~~~~~~~~~-~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I 51 (636)
.+|.-.... ....+.+|++.|++||||||+++.|++.+.. +.++
T Consensus 10 ~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~-~~~i 54 (263)
T 1p5z_B 10 RSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCED-WEVV 54 (263)
T ss_dssp -------------CCEEEEEECSTTSSHHHHHTTTGGGCTT-EEEE
T ss_pred ccCCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcCC-CEEE
Confidence 345443332 2345789999999999999999999998741 4444
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.97 E-value=2e-05 Score=76.81 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=67.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC-----------CCC-----cHHHHHHHHHHHHhC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-----------KSG-----TKVQCLTSASSALKK 77 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~-----------~~~-----~~~~~~~~~~~~L~~ 77 (636)
..++.+|.|+|++||||||+++.|+..+. .....+..|.+.-. ..+ ....+ ......|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~ 97 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGF-QRLCHALKH 97 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHH-HHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHH-HHHHHHHhc
Confidence 45678999999999999999999987764 22445555443210 001 11111 222233322
Q ss_pred C--------------------------CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 78 G--------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 78 G--------------------------~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
| +.+|+|+..+-... ..|..+ .... .++++++|.+++.+|+.+|....+
T Consensus 98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de-~~~~~l~~~~d---~~i~vd~~~~~~~~R~~~R~~~~g 173 (208)
T 3c8u_A 98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA-PGWRDLTAIWD---VSIRLEVPMADLEARLVQRWLDHG 173 (208)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCS-TTGGGGGGTCS---EEEEECCCHHHHHHHHHHHHHHTT
T ss_pred CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCC-chhHHHHHhcC---EEEEEeCCHHHHHHHHHHHHHhcC
Confidence 2 45778873321100 022223 2233 378999999999999999964322
Q ss_pred CCCCCChHHHHHHHH
Q 006654 131 NLQGGKAAAVVNRML 145 (636)
Q Consensus 131 ~~~~~vp~evi~rm~ 145 (636)
...+++..++.
T Consensus 174 ----~t~~~~~~~~~ 184 (208)
T 3c8u_A 174 ----LNHDAAVARAQ 184 (208)
T ss_dssp ----CCHHHHHHHHH
T ss_pred ----CCHHHHHHHHH
Confidence 24455555544
No 149
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.97 E-value=4.1e-05 Score=76.88 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+|.+|.+.|+|||||||+++.|++.++ +.+++.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg--~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG--ARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCCcH
Confidence 567899999999999999999999998 677887776
No 150
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.95 E-value=9.9e-05 Score=71.55 Aligned_cols=133 Identities=12% Similarity=0.181 Sum_probs=71.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC---------------------CCeEEeehhhhcC---------------CCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---------------------RPWARICQDTINK---------------GKSG 62 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---------------------~~~~~Is~D~ir~---------------~~~~ 62 (636)
+..+++|+||+||||||+.+.|...+. ..+..++.+.++. ...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 345789999999999999999987642 1122222222210 0001
Q ss_pred cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654 63 TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (636)
Q Consensus 63 ~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi 141 (636)
. -...+.++++.+..+++|. .. ..+..+........+++++ ++..++.+|...|.. ...+.+.
T Consensus 83 ~---~~~~i~~~~~~~~~~~~~~---~~---~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~-------~~e~~i~ 146 (198)
T 1lvg_A 83 T---SKEAVRAVQAMNRICVLDV---DL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLA 146 (198)
T ss_dssp E---EHHHHHHHHHTTCEEEEEC---CH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHH
T ss_pred C---CHHHHHHHHHcCCcEEEEC---CH---HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHH
Confidence 1 0134556677777777764 11 2222231112233434554 567889999988865 3445555
Q ss_pred HHHHhhhcCCCcc---CCccEEEEeCChh
Q 006654 142 NRMLQKKELPKLS---EGFSRITLCQNEN 167 (636)
Q Consensus 142 ~rm~~~fe~P~~~---Egfd~Viii~~~~ 167 (636)
+++......-... ..|+.+++.++.+
T Consensus 147 ~~l~~~~~~~~~a~~~~~~D~iivnd~le 175 (198)
T 1lvg_A 147 KRLAAARTDMESSKEPGLFDLVIINDDLD 175 (198)
T ss_dssp HHHHHHHHHTTGGGSTTTCSEEEECSSHH
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCHH
Confidence 5554432211112 5678876665543
No 151
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.95 E-value=5.3e-05 Score=79.67 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=31.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
|+.+|+|+||+||||||+|+.|++.++ +.+|+.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP--CELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccch
Confidence 677999999999999999999999998 677887764
No 152
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.93 E-value=4.2e-05 Score=76.28 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=55.0
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCC----CeEE-eeh-----------hhhcCC-CCCcHHH-----------H
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWAR-ICQ-----------DTINKG-KSGTKVQ-----------C 67 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~----~~~~-Is~-----------D~ir~~-~~~~~~~-----------~ 67 (636)
...++.+|++.|++||||||+++.|++.+.. .+.. ... +.+... ......+ +
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999986542 2222 110 112221 1121111 1
Q ss_pred HHHHHHHHhCCCeEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 68 ~~~~~~~L~~G~~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
.+.+..+|.+|..||.|..... .+.-..+... .. -.+=.+|+|++|.+++.+|+ .|.+
T Consensus 97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr 167 (223)
T 3ld9_A 97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG 167 (223)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc
Confidence 1235568899999999993321 1122222222 22 12226889999999999998 4433
No 153
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=97.91 E-value=2.3e-06 Score=80.20 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=51.8
Q ss_pred ccCcceeccc-ccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654 239 LEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (636)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~ 305 (636)
..+-|.+.+. +.. ....+.+..++..++.++++++++|||||+||||+||||.+++++||.+++.
T Consensus 73 ~~Vih~v~~~~~~~--~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~ 138 (149)
T 2eee_A 73 RYIYYLITKKRASH--KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFE 138 (149)
T ss_dssp SEEEEEEEESSTTS--CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred CEEEEEEecCCCCC--CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 3444544444 332 2335678889999999999999999999999999999999999999977665
No 154
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.87 E-value=4.5e-05 Score=76.01 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+.+|.+.|++||||||+|+.|+++++ +..++.|.+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg--~~~~d~~~~ 48 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG--IHFYDDDIL 48 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT--CEEECHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC--CcEEcHHHH
Confidence 46899999999999999999999999 666887765
No 155
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.86 E-value=2e-05 Score=78.29 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=64.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh------------hhhcCCC--CCcH-H---------HHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ------------DTINKGK--SGTK-V---------QCLTSASSA 74 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~------------D~ir~~~--~~~~-~---------~~~~~~~~~ 74 (636)
+..+|++.|++||||||+++.|++.++.....+.. +.+.... .... . +....+..+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~pa 83 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD 83 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998742222211 1111111 1111 1 112456677
Q ss_pred HhCCCeEEEeCCCCCHHHH----------HHHHHh-CCCCCeE-EEEEE-eCCHHHHHHHHHhc
Q 006654 75 LKKGKSVFLDRCNLEREQR----------TDFVKL-GGPEVDV-HAVVL-DLPAKLCISRSVKR 125 (636)
Q Consensus 75 L~~G~~VIID~tn~~~~~R----------~~l~~l-~~~g~~v-~vV~L-d~p~e~l~~R~~~R 125 (636)
|.+|..||.|......-.. ..|+.. ....... .+|+| ++|.+++.+|...|
T Consensus 84 L~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~ 147 (216)
T 3tmk_A 84 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG 147 (216)
T ss_dssp HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS
T ss_pred HHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC
Confidence 8999999999943332111 123222 2222222 68899 99999998886544
No 156
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.79 E-value=5.1e-05 Score=79.73 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=66.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCC-----------CCC---c-HHHHHHHHHHHHh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKG-----------KSG---T-KVQCLTSASSALK 76 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~-----------~~~---~-~~~~~~~~~~~L~ 76 (636)
...|.+|.|+|++||||||+++.|...+. .....++.|.+... ..+ + ....+......+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~ 168 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIK 168 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhh
Confidence 45788999999999999999999988764 23566787776311 011 1 1122233444454
Q ss_pred CCC---------------------------eEEEeCCCCCHHHH-----HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654 77 KGK---------------------------SVFLDRCNLEREQR-----TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV 123 (636)
Q Consensus 77 ~G~---------------------------~VIID~tn~~~~~R-----~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~ 123 (636)
.|+ -+|+++.+.-...+ ..|..+ ...+ ..|++++|.+++++|..
T Consensus 169 ~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D---~~I~Vda~~d~~~~R~i 245 (321)
T 3tqc_A 169 SGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFD---FSLFVDAQAQVIQKWYI 245 (321)
T ss_dssp TTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCS---EEEEEECCHHHHHHHHH
T ss_pred ccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcC---eEEEEECCHHHHHHHHH
Confidence 443 25667744333221 011111 1122 37899999999999999
Q ss_pred hccc
Q 006654 124 KRIE 127 (636)
Q Consensus 124 ~R~~ 127 (636)
.|..
T Consensus 246 ~Rd~ 249 (321)
T 3tqc_A 246 DRVL 249 (321)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9974
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.73 E-value=0.00017 Score=70.52 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
++.+|+|+||+||||||+++.|.+.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999998764
No 158
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.61 E-value=0.0006 Score=71.34 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
++.+|+++||+||||||+|..|++.++ ...|+.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc--cceeecCcc
Confidence 356899999999999999999999987 677887765
No 159
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.60 E-value=0.00041 Score=67.02 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=31.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.++.+|.|+|++||||||+++.|+..++..+..+++|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 3567899999999999999999998765224567777654
No 160
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.56 E-value=0.00016 Score=74.78 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=30.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK 58 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~ 58 (636)
++.+|.|.|++||||||+|+.|++.++ ..+.+|+.|.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 466899999999999999999998765 3367789888763
No 161
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.55 E-value=0.00015 Score=74.83 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=47.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH----HHHHHHHhCC--CeEEEeCC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL----TSASSALKKG--KSVFLDRC 86 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~----~~~~~~L~~G--~~VIID~t 86 (636)
...|..++|.||||+|||++|+.+++.++.++..++...+...+.+.....+ ..+...++.. ..++||..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEi 108 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDL 108 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 3457788999999999999999999999988888988777766666443322 2222222332 34677874
No 162
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.55 E-value=0.0012 Score=68.95 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=32.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
..+|.+|+++||+||||||+|..|++.++ ..+|+.|..
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~ 44 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILP--VELISVDSA 44 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCTT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCC--CcEEecccc
Confidence 35688999999999999999999999987 667777653
No 163
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=5.5e-05 Score=75.28 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+|.+|++.|++||||||+++.|++.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999999984
No 164
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.50 E-value=0.00075 Score=67.30 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=30.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCC--------eEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--------~~~Is~D~ir 57 (636)
++.+|.|+|++||||||+++.|+..+|.. ...+++|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY 70 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence 56789999999999999999999877622 2256766553
No 165
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0002 Score=78.21 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=44.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~ 71 (636)
..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+.....+..+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~ 266 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM 266 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHH
Confidence 356778999999999999999999999988888998888888888665544433
No 166
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00017 Score=78.68 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=45.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~ 71 (636)
+.|+=|+|.||||+|||++|++++.+++.++..++...+...+.|.....++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~l 266 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA 266 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHH
Confidence 356778999999999999999999999988888998888888888665544333
No 167
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00019 Score=77.51 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=44.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~ 71 (636)
..|.=|+|.||||+|||.+|++++.+.+.++..++...+...+.|.....++.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~l 233 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL 233 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHH
Confidence 345668999999999999999999999988888998888888888766554433
No 168
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.41 E-value=0.002 Score=63.32 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=72.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh----------------------hhcC----C-----------CC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----------------------TINK----G-----------KS 61 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D----------------------~ir~----~-----------~~ 61 (636)
+..++.|+||+||||||+.+.|+..++ ..+.+..+ .+.. + ..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY 100 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccC
Confidence 456789999999999999999998762 11222111 0000 0 00
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654 62 GTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141 (636)
Q Consensus 62 ~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi 141 (636)
+.. ...+.+.+..+..+++|. .+.-.++++ ..-.......++.-..+..++.+|...|.. .....+.
T Consensus 101 g~~---~~~i~~~l~~~~~~il~~-~lsggq~qR--~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~-------~~~~~i~ 167 (218)
T 1z6g_A 101 GTL---KSEYDKAKEQNKICLFEM-NINGVKQLK--KSTHIKNALYIFIKPPSTDVLLSRLLTRNT-------ENQEQIQ 167 (218)
T ss_dssp EEE---HHHHHHHHHTTCEEEEEE-CHHHHHHHT--TCSSCCSCEEEEEECSCHHHHHHHHHHTCC-------CCHHHHH
T ss_pred CCc---HHHHHHHHhCCCcEEEEe-cHHHHHHHH--HHhcCCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHH
Confidence 000 134566777888888873 222222221 111001113343335788899999988865 2334444
Q ss_pred HHHHhhhcCCCc--cCCccEEEEeCChhHHHH
Q 006654 142 NRMLQKKELPKL--SEGFSRITLCQNENDVQA 171 (636)
Q Consensus 142 ~rm~~~fe~P~~--~Egfd~Viii~~~~~vda 171 (636)
+++......-.. ...++.|++..+.+++-+
T Consensus 168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 168 KRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 444322111001 156788877665544433
No 169
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.40 E-value=0.00091 Score=69.36 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=30.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~i 56 (636)
.++.+|.|+|++||||||+++.|+..++ .....++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5678999999999999999999998654 12445565554
No 170
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00023 Score=77.53 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=43.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT 69 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~ 69 (636)
..|+=|+|.||||+|||++|+++|..++.++..++...+...+.|.....++
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir 255 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR 255 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHH
Confidence 3466789999999999999999999999888889888888888776655443
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.35 E-value=0.00039 Score=70.35 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=48.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCC--CeEEEeCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC 86 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G--~~VIID~t 86 (636)
.+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+....... ..++||..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 119 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 119 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECH
Confidence 455689999999999999999999998777778877776666555444333333333333 34677874
No 172
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00026 Score=77.64 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=45.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~ 71 (636)
..|+=|+|.||||+|||++|++++.+++.++..++...+...+.|.....++.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~l 294 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHH
Confidence 457778999999999999999999999988888998888888888766544433
No 173
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00031 Score=76.37 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=45.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~ 73 (636)
..|.=|+|.||||+|||.+|++++.+++.++..++...+...+.+..+..++.+-.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~ 269 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFK 269 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHH
Confidence 34667899999999999999999999998888899888888888876655544433
No 174
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.32 E-value=0.00039 Score=70.84 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=47.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH-h-CCCeEEEeCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-K-KGKSVFLDRC 86 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L-~-~G~~VIID~t 86 (636)
.+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+.... . .+..++||..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 122 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccH
Confidence 456789999999999999999999998777777776666555555444333332222 2 2345778874
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.29 E-value=0.00051 Score=68.25 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=45.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH-HHHHHHHhC-CCeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKK-GKSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~-~~~~~~L~~-G~~VIID~tn 87 (636)
.+.-++|.|+||+||||+|+.+++.++.++..++...+.....+...... .....+... +..++||...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid 108 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEID 108 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcc
Confidence 45568899999999999999999999888877776666544434332222 222222222 3346778754
No 176
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.28 E-value=0.0023 Score=69.07 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=29.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ 55 (636)
+.+|+++||+||||||+|..|++.++ ...|+.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~--~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT--EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC--CeEeecCc
Confidence 45889999999999999999999988 56788765
No 177
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=97.26 E-value=4.4e-05 Score=72.08 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=42.2
Q ss_pred hcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654 256 VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE 305 (636)
Q Consensus 256 ~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~ 305 (636)
..+.+..|+..++..+.+++. |||||.||||+||||.+++++||.+...
T Consensus 99 ~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~ 147 (158)
T 2fg1_A 99 RYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELI 147 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred cHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhc
Confidence 355677788888889988887 9999999999999999999998876554
No 178
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.00058 Score=68.22 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~ 62 (636)
|.-++|.|+||+||||+|+.++..++.++..++...+.....+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~ 87 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 87 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhh
Confidence 4458899999999999999999998877877776555444333
No 179
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00027 Score=69.96 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+..+|.+.|+.||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999999876
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.17 E-value=0.00047 Score=72.01 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=46.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh-C-CCeEEEeCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGTKVQCLTSASSALK-K-GKSVFLDRC 86 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~-~-G~~VIID~t 86 (636)
.+.-|+|.||||+|||++|+.++..+ +.++..++...+...+.+........+..... . ...++||..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEi 114 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI 114 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecH
Confidence 45678999999999999999999998 66677777666655555544333333333332 2 335778874
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.13 E-value=0.00063 Score=70.74 Aligned_cols=69 Identities=14% Similarity=0.308 Sum_probs=49.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh-CC-CeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK-KG-KSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~-~G-~~VIID~tn 87 (636)
.+.-++|.|+||+|||++|+.++...+.++..++...+...+.+.....+..+..... .. ..++||...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid 120 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 120 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhh
Confidence 3567899999999999999999999988888888877776666665544433333333 22 357788743
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.07 E-value=0.0019 Score=65.96 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=45.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
.+.-++|.|+||+|||++|+.+++.++ .++..++...+.....+........+.+.. .+..++||...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid 140 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAY 140 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-CCCEEEEEChh
Confidence 344689999999999999999988763 256777777776655554433222222222 45678899853
No 183
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.07 E-value=0.00037 Score=73.74 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=32.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
|+.+|+++|++||||||+|+.|++.++ ..+|+.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 557899999999999999999999988 677888876
No 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.06 E-value=0.00099 Score=70.44 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=48.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC 86 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~t 86 (636)
..+.-++|.|+||+||||+|+.+++.++.++..++...+...+.+........+..... .+..++||..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 34667899999999999999999999987787888777766655544443333333222 2345788863
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.03 E-value=0.00076 Score=71.38 Aligned_cols=68 Identities=16% Similarity=0.325 Sum_probs=45.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN 87 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~tn 87 (636)
+.-|+|.|+||+|||++|+.++..++.++..++...+...+.+........+..... .+..++||...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid 153 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 153 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechH
Confidence 445789999999999999999999997787788766666555543333333333332 33457888743
No 186
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.01 E-value=0.0012 Score=68.86 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=31.0
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI 56 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~i 56 (636)
..++.+|.|+|++||||||+++.|+..+. .....+.+|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 45678999999999999999999987653 23456666654
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.94 E-value=0.0041 Score=62.62 Aligned_cols=37 Identities=27% Similarity=0.594 Sum_probs=31.2
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
...+.-++|.|+||+|||++|+.+++..+.++..++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC
Confidence 3456788999999999999999999998877766653
No 188
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.94 E-value=0.00068 Score=63.96 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=47.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcCCCCCcHHH-HHHHHHHHHhCCCeEEEeCC---CCCH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRC---NLER 90 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~~~~~~~~~-~~~~~~~~L~~G~~VIID~t---n~~~ 90 (636)
....++|+|+||+||||+++.++..+ +.....++...+.......... ....+.+.+.....+|+|.. ....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~ 116 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSD 116 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCH
Confidence 35678999999999999999998665 4333445543332110000000 00123445667778999985 3556
Q ss_pred HHHHHHHHh
Q 006654 91 EQRTDFVKL 99 (636)
Q Consensus 91 ~~R~~l~~l 99 (636)
+.+..+..+
T Consensus 117 ~~~~~l~~l 125 (180)
T 3ec2_A 117 WQRELISYI 125 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 189
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.92 E-value=0.0017 Score=68.47 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+...|++-|+-||||||+++.|++.+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998875
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.0015 Score=60.54 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999875
No 191
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.0018 Score=66.07 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=31.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~ 62 (636)
++|.|||||||||+++.++...+.++..++...+...+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~ 86 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 86 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence 8999999999999999999998866666776555443333
No 192
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.74 E-value=0.0017 Score=76.00 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=49.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH-HHHHhCCCe-EEEeC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA-SSALKKGKS-VFLDR 85 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~-~~~L~~G~~-VIID~ 85 (636)
..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+..+..++.+ ..+...... ++||.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDE 305 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence 356779999999999999999999999988888888777777777655544433 333333333 55666
No 193
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.73 E-value=0.0027 Score=63.20 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=30.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~ 58 (636)
++|+|+||+||||+++.++...+.++..++...+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 899999999999999999998876777777655433
No 194
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.72 E-value=0.0014 Score=72.88 Aligned_cols=62 Identities=3% Similarity=0.076 Sum_probs=44.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC-----CeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL 88 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~-----~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~ 88 (636)
...+|+|+|+|||||||+|+.|+++++. .+..++.|. .. .+...+...++.|..||++..+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-------~~-ei~~va~~~~~~G~~Vv~~~~sp 460 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-------KT-ELLSLIQDFIGSGSGLIIPDQWE 460 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-------CH-HHHTTHHHHHHTTCEEEESSCCC
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-------cH-HHHHHHHHHHhcCCeEEEecCCH
Confidence 4578999999999999999999999873 345677776 11 12233444557787788776444
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.70 E-value=0.0015 Score=60.61 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567999999999999999999876
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.69 E-value=0.00077 Score=69.48 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=31.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
..+.-++|.|+||+||||+|+.++..++.++..++...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 345678999999999999999999998876766665443
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.66 E-value=0.0018 Score=69.07 Aligned_cols=69 Identities=17% Similarity=0.322 Sum_probs=42.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHH-HHhCC-CeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS-ALKKG-KSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~-~L~~G-~~VIID~tn 87 (636)
.+.-++|.|+||+|||++|+.++...+.++..++...+.....+.....+..+.. +.... ..++||...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid 217 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECch
Confidence 3567899999999999999999999987777777666655444433332322222 22333 357888853
No 198
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.60 E-value=0.0036 Score=69.11 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=45.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH-HHHHHHHhC-CCeEEEeCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKK-GKSVFLDRC 86 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~-~~~~~~L~~-G~~VIID~t 86 (636)
|.-++|+|+||+||||+|+.++...+.++..++...+.....+...... ..+..+... ...++||..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEi 117 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEI 117 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEech
Confidence 4448899999999999999999999988888887666555544333222 233333332 334677763
No 199
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.59 E-value=0.0067 Score=58.65 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+..++.|+|++||||||+.+.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999988763
No 200
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.57 E-value=0.0024 Score=69.83 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=41.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCCcHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSAS 72 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~~~~~~~~~~~ 72 (636)
.+.-++|.||||+|||++|+.+++.++ .++..++...+...+.+....+.....
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 117 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFR 117 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHH
Confidence 345688999999999999999999998 678888877777666665554333333
No 201
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.57 E-value=0.0098 Score=64.98 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=32.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.+|.+|+++|+|||||||++.+|+..+ +.....++.|.++
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 358999999999999999999988654 4456677877664
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.54 E-value=0.013 Score=53.48 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=50.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDF 96 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-~~~~~R~~l 96 (636)
.-|+|.|+||+|||++|+.+.... +.++. ++...+... ..... .+. ...+..++||... +.......+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~---~~~--~a~~g~l~ldei~~l~~~~q~~L 96 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLND---FIA--LAQGGTLVLSHPEHLTREQQYHL 96 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHH---HHH--HHTTSCEEEECGGGSCHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhc---HHH--HcCCcEEEEcChHHCCHHHHHHH
Confidence 347899999999999999999875 34566 654433322 11111 111 1245678889865 444444555
Q ss_pred HHh-CCCCCeEEE-EEEeCCHHHH
Q 006654 97 VKL-GGPEVDVHA-VVLDLPAKLC 118 (636)
Q Consensus 97 ~~l-~~~g~~v~v-V~Ld~p~e~l 118 (636)
..+ ......+.+ .--+.+.+.+
T Consensus 97 l~~l~~~~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 97 VQLQSQEHRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp HHHHHSSSCSSCEEEEESSCHHHH
T ss_pred HHHHhhcCCCEEEEEECCcCHHHH
Confidence 555 332222222 3335555543
No 203
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.51 E-value=0.0047 Score=62.52 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=29.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
++|+|+||+||||+++.++...+.++..++...+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 89999999999999999999887677777754443
No 204
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.50 E-value=0.0041 Score=68.82 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=47.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCC--eEEEeCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDRC 86 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~--~VIID~t 86 (636)
..+.-++|.|+||+|||++|+.++...+.++..++...+.....+.....+..+-+....+. .++||..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecch
Confidence 34556899999999999999999999988888888777766666654433333222233332 4677873
No 205
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.0032 Score=59.70 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHc
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~ 44 (636)
++|.|+||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999874
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.46 E-value=0.0045 Score=57.28 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=38.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
....++|+|++||||||+++.++... +.....++...+... ..+.....+|+|...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DAAFEAEYLAVDQVE 93 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GGGGGCSEEEEESTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HHHhCCCEEEEeCcc
Confidence 44578899999999999999998765 433455555444322 124455678888843
No 207
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.39 E-value=0.005 Score=63.77 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=49.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV 97 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-~~~~~R~~l~ 97 (636)
.+.-++|.|+||+|||++|+.+++..+.++..++...+. .... +..+...+..+..++||... +.......+.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll 127 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-----KSGD-LAAILTNLSEGDILFIDEIHRLSPAIEEVLY 127 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----SHHH-HHHHHHTCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----chhH-HHHHHHhccCCCEEEEechhhcCHHHHHHHH
Confidence 344589999999999999999999998777777755442 1111 22223334556778999865 4444444554
Q ss_pred Hh
Q 006654 98 KL 99 (636)
Q Consensus 98 ~l 99 (636)
..
T Consensus 128 ~~ 129 (338)
T 3pfi_A 128 PA 129 (338)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 208
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.33 E-value=0.0043 Score=65.10 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=40.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh--hhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ--DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~--D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
..++++.|+||+||||||.+++...+.+...++. ++..+......+.....+.+.+...+.+|||...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~ 192 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK 192 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccc
Confidence 4567899999999999999998754322222333 1111111123344445555556544488999843
No 209
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.30 E-value=0.0029 Score=66.67 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=32.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.+.-++|.|+||+|||++|+.+++.++.++..++...+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 345688999999999999999999998888777765443
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.30 E-value=0.002 Score=70.31 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGK 60 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~ 60 (636)
.+.-|+|.||||+|||++|+.++..+ +.++..++...+...+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 45678999999999999999999998 6566667765554433
No 211
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.29 E-value=0.004 Score=63.82 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=48.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCC-HHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLE-REQRTDFV 97 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~-~~~R~~l~ 97 (636)
.+..++|.|+||+||||+|+.+++.++.++..++...+. ....+...+...+..+..++||..... ......+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~ 111 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-----KPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLY 111 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----SHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----ChHHHHHHHHHhccCCCEEEEECCcccccchHHHHH
Confidence 345678999999999999999999988666666544331 122222322222455667899996543 33444444
Q ss_pred Hh
Q 006654 98 KL 99 (636)
Q Consensus 98 ~l 99 (636)
..
T Consensus 112 ~~ 113 (324)
T 1hqc_A 112 PA 113 (324)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.29 E-value=0.014 Score=63.67 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=31.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.+|.+|+++|++||||||++..|+..+ +.....++.|.++
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 458999999999999999999988543 4456667766553
No 213
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.27 E-value=0.0032 Score=60.99 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=28.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i 56 (636)
.+..++|.|+||+||||+++.+++.+. ..+..++...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456789999999999999999987654 34555665444
No 214
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.26 E-value=0.0029 Score=65.24 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=48.2
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh------CCCeEEEeCCCCC
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLE 89 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~------~G~~VIID~tn~~ 89 (636)
....|.++++.|+||+||||+++.+++.++..+..++.... + ...+...+..... ..+.+|||....-
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l 117 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS 117 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C-HHHHHHHHHHHHhhcccCCCCeEEEEECCccc
Confidence 34456788889999999999999999998855555664322 1 2222222333332 2345889997644
Q ss_pred --HHHHHHHHHh
Q 006654 90 --REQRTDFVKL 99 (636)
Q Consensus 90 --~~~R~~l~~l 99 (636)
......+..+
T Consensus 118 ~~~~~~~~L~~~ 129 (324)
T 3u61_B 118 GLAESQRHLRSF 129 (324)
T ss_dssp GGHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 4444455554
No 215
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.26 E-value=0.011 Score=61.65 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..+..++|.|+||+||||+++.+++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999876
No 216
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.25 E-value=0.0031 Score=65.03 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=31.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCC-----CeEEe-ehhhhc
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARI-CQDTIN 57 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-----~~~~I-s~D~ir 57 (636)
..++.+|.++|++||||||+++.|+..++. ....+ ++|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 456889999999999999999999877642 23445 887763
No 217
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.24 E-value=0.018 Score=59.54 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=20.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..+++|+|+|| ||+|+.++|.+.++
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence 34578999997 79999999998764
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.22 E-value=0.0037 Score=73.08 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=44.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK 76 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~ 76 (636)
.|.=++|.||||+|||.+|++++.+.+.++..++...+...+.+..+..++.+-+..+
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar 567 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHH
Confidence 4556889999999999999999999998888888888878887766554444433333
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.19 E-value=0.0046 Score=63.91 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=42.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn 87 (636)
+.-++|.|+||+||||+++.++..+ +.++..++...+......... .........+.....++||...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~ 108 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQ 108 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcc
Confidence 4457899999999999999999876 556777776544211000000 0012223344556778999853
No 220
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.18 E-value=0.0074 Score=63.79 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
+.-++|.|+||+||||+|+.+++.++.++..++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 108 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL 108 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhh
Confidence 4458899999999999999999999877877775544
No 221
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.15 E-value=0.0062 Score=66.60 Aligned_cols=44 Identities=18% Similarity=0.472 Sum_probs=34.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-CCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG 62 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-~~~~ 62 (636)
.+.-|+|+||||+||||+|+.+++.++.++..++...+.. ++.+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 3456899999999999999999999998888888766554 3544
No 222
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.14 E-value=0.012 Score=61.07 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=70.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCC-eEEeeh-----hhhcCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCCCCH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ-----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER 90 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is~-----D~ir~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn~~~ 90 (636)
..+.+|++-|.-||||||..+.|.+.+... +.++.. ..++. + .+......| ..|.-+|.|.+-+..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~-~------yl~R~~~~LP~~G~IvIfDRswYs~ 156 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQ-W------YFQRYVATFPTAGEFVLFDRSWYNR 156 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTS-C------TTHHHHTTCCCTTCEEEEEECGGGG
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhc-h------HHHHHHHhcccCCeEEEEECCcchH
Confidence 458999999999999999999999888633 323321 11111 1 123444556 789999999844332
Q ss_pred H------------HH-HHHHH------h-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 91 E------------QR-TDFVK------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 91 ~------------~R-~~l~~------l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
- +. ..+.. + ...|..+..++|+++.++..+|+..|...+
T Consensus 157 v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp 215 (304)
T 3czq_A 157 AGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDP 215 (304)
T ss_dssp TTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCc
Confidence 1 11 11222 2 235677888999999999999999886543
No 223
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.12 E-value=0.022 Score=58.86 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=68.9
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeE-Eee---------------------hhhh----cCCCCCcHH-----
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC---------------------QDTI----NKGKSGTKV----- 65 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is---------------------~D~i----r~~~~~~~~----- 65 (636)
...++.|||+|| ||+|+.++|.+.++..+. .++ .+.+ .++.+..+.
T Consensus 97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn 173 (292)
T 3tvt_A 97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN 173 (292)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence 345677889997 599999999998763221 111 1101 011000000
Q ss_pred ---HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHH
Q 006654 66 ---QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAV 140 (636)
Q Consensus 66 ---~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~ev 140 (636)
.....+.+.++.|+.+|+|-. ......+ ...-.. .+|++. .+.+++.+|+..|.. +....+
T Consensus 174 ~YGT~~~~V~~~~~~gk~viLdid------~qg~~~lk~~~~~p-i~IFI~PpS~e~L~~r~~~r~~-------e~~~~~ 239 (292)
T 3tvt_A 174 LYGTSVASVREVAEKGKHCILDVS------GNAIKRLQVAQLYP-VAVFIKPKSVDSVMEMNRRMTE-------EQAKKT 239 (292)
T ss_dssp EEEEEHHHHHHHHHHTCEEEECCC------THHHHHHHHTTCCC-EEEEECCSCHHHHHHTCTTSCT-------THHHHH
T ss_pred eeEEehHHHHHHHHcCCcEEEecc------chhhhhcccccccc-eEEEEECCCHHHHHHHHhCCCc-------hhHHHH
Confidence 012567788899999999983 2223333 222223 355655 456777777655543 233445
Q ss_pred HHHHHhh-hcCCCccCCccEEEEeCCh
Q 006654 141 VNRMLQK-KELPKLSEGFSRITLCQNE 166 (636)
Q Consensus 141 i~rm~~~-fe~P~~~Egfd~Viii~~~ 166 (636)
..++.+. .+. .+.|+.+++-++.
T Consensus 240 ~~r~~k~e~e~---~~~fD~vIvNddl 263 (292)
T 3tvt_A 240 YERAIKMEQEF---GEYFTGVVQGDTI 263 (292)
T ss_dssp HHHHHHHHHHH---TTTCSEEECCSSH
T ss_pred HHHHHHHHHhh---hhhCCEEEECcCH
Confidence 5554432 222 3457877554443
No 224
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.12 E-value=0.041 Score=58.83 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.0
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+.....|.+-|+-||||||+++.|++.+.
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567899999999999999999998764
No 225
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.013 Score=61.41 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 446689999999999999999999875
No 226
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.06 E-value=0.013 Score=56.07 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+..+++.|+||+||||+++.+++...
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345889999999999999999998764
No 227
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.04 E-value=0.0049 Score=62.46 Aligned_cols=40 Identities=15% Similarity=0.435 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK 58 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~ 58 (636)
.+.-++|.|+||+|||++|+.+++.++.++..++...+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 3556789999999999999999999987787787666544
No 228
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.02 E-value=0.023 Score=59.11 Aligned_cols=95 Identities=9% Similarity=0.025 Sum_probs=58.4
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEE---eehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---ICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~---Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R 93 (636)
...++-|||+|| ||+|+.++|.+.++..|.. +..| +.++.+. -...+.+.+++|+.+|+|- ..
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~~r~-i~~~~fi----s~~~V~~vl~~Gk~~ILDI------d~ 207 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETVSRT-DSPSKII----KLDTVRVIAEKDKHALLDV------TP 207 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------CC----CHHHHHHHHHTTCEEEECC------CH
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccccccc-ccCCCee----cHHHHHHHHHCCCcEEEEE------CH
Confidence 345566889999 7999999999998744432 2223 2233322 3467788889999999998 33
Q ss_pred HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
+....+ .....++.++....+.++|.+| ..|.
T Consensus 208 QGa~~lk~~~~~pi~IFI~PPS~eeL~~r-r~R~ 240 (308)
T 3kfv_A 208 SAIERLNYVQYYPIVVFFIPESRPALKAL-RQWL 240 (308)
T ss_dssp HHHHHHHHTTCCCEEEEEEESCHHHHHHH-HHHH
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHH-HhcC
Confidence 344344 2233445555556777888876 4443
No 229
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.99 E-value=0.013 Score=61.13 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=38.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN 87 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn 87 (636)
.+..++|+||||+||||+++.++...+..+...+...+. ....+ ..+...+..+.-++||..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~-----~~~~l-~~~~~~~~~~~v~~iDE~~ 112 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV-----KQGDM-AAILTSLERGDVLFIDEIH 112 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC-----SHHHH-HHHHHHCCTTCEEEEETGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc-----CHHHH-HHHHHHccCCCEEEEcchh
Confidence 346689999999999999999999987554433332221 11111 1222234445567888754
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.93 E-value=0.0086 Score=61.89 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=30.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir 57 (636)
.++.+++++|++||||||++..|+..+ |.....++.|.++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 356799999999999999999988543 4456667777653
No 231
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.91 E-value=0.034 Score=61.76 Aligned_cols=40 Identities=35% Similarity=0.516 Sum_probs=30.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.++.+|+++|+||+||||++.+|+..+ +.....++.|.++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 467899999999999999999998654 4556677776644
No 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.91 E-value=0.0097 Score=66.03 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=33.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~ 62 (636)
=++|+|+||+||||+|+.++...+.++..++...+.....+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g 106 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 106 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence 38999999999999999999998877888887666554444
No 233
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.90 E-value=0.045 Score=57.01 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=27.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC 52 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is 52 (636)
+..++|.|+||+|||++|+.+++.++. ++..++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 367899999999999999999998873 454444
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.87 E-value=0.0074 Score=70.82 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=47.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHH-HHHHHhC-CCeEEEeCC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTS-ASSALKK-GKSVFLDRC 86 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~-~~~~L~~-G~~VIID~t 86 (636)
..+.-|+|+|+||+||||+|+.++..++.++..++...+.....+.....+.. ...+... ...+++|..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESG
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccH
Confidence 34567899999999999999999999887777788766665555544433322 2233222 335777874
No 235
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=95.85 E-value=0.067 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....|.+-|+-||||||+++.|++.+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346889999999999999999998764
No 236
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.79 E-value=0.0042 Score=59.82 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=27.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ 55 (636)
+++++|.+||||||||++++.. +.+..++.+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 3789999999999999999977 65666777643
No 237
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=95.76 E-value=0.0026 Score=65.19 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=44.9
Q ss_pred cccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 006654 257 KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE 306 (636)
Q Consensus 257 ~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~ 306 (636)
.+.+......+|.+|..+|+++|++||+|+|+||+|.+++|++..+.+.+
T Consensus 193 ~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~ 242 (277)
T 3sig_A 193 GRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLD 242 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhh
Confidence 44566677779999999999999999999999999999999999998874
No 238
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.75 E-value=0.005 Score=56.13 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=41.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC-CHHHHHHHHHh
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL-EREQRTDFVKL 99 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~-~~~~R~~l~~l 99 (636)
-|+|.|+||+|||++|+.+....+ ++..++...+.... .....+ ...+..+++|.... .......+..+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~-~a~~~~l~lDei~~l~~~~q~~Ll~~ 98 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQ-KAEGGVLYVGDIAQYSRNIQTGITFI 98 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHH-HTTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHH-hCCCCeEEEeChHHCCHHHHHHHHHH
Confidence 378999999999999999987765 56555543332111 111111 23456788888653 44444444444
No 239
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=95.74 E-value=0.018 Score=61.89 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=58.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-CCCc--HHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-KSGT--KVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-~~~~--~~~~~~~~~~~L~~G~~VIID~tn~~~~~R 93 (636)
+..+++|||+||+| +|+.++|.+.++..+.. .+-.-|.+ ..|- +..-...+.+.+++|+.+|+|- ..
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~-~tr~pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~~iLdI------d~ 298 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQI-AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP 298 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE-CCCCCCCSSSCCC--CCCCHHHHHHHHTTTCEEEECC------CH
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCcccccc-ccCCCCCcccCCccCCcCcHHHHHHHHHcCCEEEEEe------CH
Confidence 34678899999998 89999999987643432 11001111 0010 0112477788899999999998 23
Q ss_pred HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
+....+ ...-.++.++....+.++|.+| ..|.
T Consensus 299 qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~ 331 (391)
T 3tsz_A 299 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRL 331 (391)
T ss_dssp HHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHH
T ss_pred HHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcC
Confidence 333333 2222344444445667888776 4443
No 240
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.01 Score=61.72 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..|. +++.|+||+||||+++.++..+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3455 8999999999999999999853
No 241
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.024 Score=58.88 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=28.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc------CCCeEEee
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARIC 52 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~------~~~~~~Is 52 (636)
..+..++|.|+||+||||+++.+++.. +..+..++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 456688999999999999999999876 54455565
No 242
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.66 E-value=0.016 Score=63.12 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=31.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.+|.+|+++|+||+||||++.+|+..+ +.....++.|..+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 456789999999999999999998654 3456677877654
No 243
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.65 E-value=0.033 Score=58.11 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=45.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhc--------------C---CCCCcHHHHHHHHHHHHh-CCC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTIN--------------K---GKSGTKVQCLTSASSALK-KGK 79 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir--------------~---~~~~~~~~~~~~~~~~L~-~G~ 79 (636)
.++|.|+||+||||+++.++.... ..+..++..... . ............+...+. .+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 789999999999999999998873 234455521110 0 001123334444444443 232
Q ss_pred --eEEEeCCC-CCHHHHHHHHHh
Q 006654 80 --SVFLDRCN-LEREQRTDFVKL 99 (636)
Q Consensus 80 --~VIID~tn-~~~~~R~~l~~l 99 (636)
.+|||... +.......+..+
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~ 148 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRL 148 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHH
Confidence 57889854 445555555555
No 244
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.64 E-value=0.0033 Score=62.90 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=29.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
.-++|.|+||+||||+|+.++...+.++..++...+.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 3378999999999999999999988766666654443
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.60 E-value=0.01 Score=61.63 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=31.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
.++.+|+++|++||||||++..|+..+ +.....++.|.++
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 467899999999999999999998654 3445667777654
No 246
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.56 E-value=0.011 Score=61.57 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.|. +++.|+||+||||+++.+++.+
T Consensus 46 ~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 46 LPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred Cce-EEEECCCCCCHHHHHHHHHHHH
Confidence 344 7899999999999999999875
No 247
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.53 E-value=0.008 Score=65.47 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=40.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHh-CCCeEEEeCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALK-KGKSVFLDRC 86 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~-~G~~VIID~t 86 (636)
+.-++|.|+||+||||+++.++... +..+..++...+......... .........+. ....++||..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV 203 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence 4568899999999999999998766 445566665443211000000 00122334445 5667899985
No 248
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.50 E-value=0.012 Score=56.17 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=37.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC----CC-CCcHHHHHHHHHHHHhCCCeEEEeCC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK----GK-SGTKVQCLTSASSALKKGKSVFLDRC 86 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~----~~-~~~~~~~~~~~~~~L~~G~~VIID~t 86 (636)
..++|.|+||+||||+|+.++... +.++..++...+.. .. .... ......+.....+|||..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lilDei 124 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTM----NEKLDYIKKVPVLMLDDL 124 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCC----HHHHHHHHHSSEEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchH----HHHHHHhcCCCEEEEcCC
Confidence 678899999999999999998765 33454555433211 00 0011 122233444567899985
No 249
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.47 E-value=0.0094 Score=57.23 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=27.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
++..+++++|+||||||||+..++...+.+...++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 345689999999999999999998744434445554
No 250
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.46 E-value=0.0095 Score=60.47 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=54.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc-C----CCeEEeehhhhcCCCCCcHHHHHHHHHHH--Hh--CCCeEEEeCCC-C
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS-A----RPWARICQDTINKGKSGTKVQCLTSASSA--LK--KGKSVFLDRCN-L 88 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~----~~~~~Is~D~ir~~~~~~~~~~~~~~~~~--L~--~G~~VIID~tn-~ 88 (636)
.+. +++.|+||+||||+|+.+++.+ + ..+..++........ ... ......... +. ..+.+|||... +
T Consensus 38 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 38 IPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID-VVR-HKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp CCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT-TSS-HHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred CCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH-HHH-HHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 344 8999999999999999999875 2 123444432221100 011 111111111 11 12358889864 4
Q ss_pred CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 89 ~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
.......+..+ ......+.+|...-....+...+..|.
T Consensus 115 ~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 115 TADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp CHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 55555556666 554444445444433333344444453
No 251
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.46 E-value=0.024 Score=61.91 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=43.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCCCC-CHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCNL-EREQRTDFV 97 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~tn~-~~~~R~~l~ 97 (636)
.-++|.|+||+||||+|+.+++.++.++..++..... .......+..+..... .+..++||.... +..+...++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL 127 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL 127 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH
Confidence 4589999999999999999999988666666532210 0011122233333332 334588898653 334444555
Q ss_pred Hh
Q 006654 98 KL 99 (636)
Q Consensus 98 ~l 99 (636)
..
T Consensus 128 ~~ 129 (447)
T 3pvs_A 128 PH 129 (447)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 252
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.44 E-value=0.029 Score=58.37 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=24.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+..+++.|+||+||||+++.+++.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456789999999999999999998875
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.30 E-value=0.038 Score=57.02 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
+.+++++|++|+||||++..|+..+ +.....++.|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 7889999999999999999988554 4456667777543
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.28 E-value=0.13 Score=55.83 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=32.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir 57 (636)
.+|.+|+++|++|+||||++..|+..+ |.....++.|..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 467899999999999999999988543 6567778888654
No 255
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.25 E-value=0.0095 Score=56.80 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+.|+|++||||||+.+.++..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999997765
No 256
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.25 E-value=0.012 Score=59.93 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=52.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCCCCCcHHHHHHHHHHHHh------CC--CeEEEeC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSALK------KG--KSVFLDR 85 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~------~G--~~VIID~ 85 (636)
.+. +++.|+||+||||+|+.+++.+. ..+..++... ......+...+..... .+ +.+|||.
T Consensus 42 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe 115 (323)
T 1sxj_B 42 MPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-----DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDE 115 (323)
T ss_dssp CCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-----CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEES
T ss_pred CCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-----ccChHHHHHHHHHHHhccccCCCCCceEEEEEC
Confidence 345 89999999999999999998752 1133333211 1112222222332220 33 3578898
Q ss_pred CC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654 86 CN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI 126 (636)
Q Consensus 86 tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~ 126 (636)
.. +.......+..+ .+......+|...-+...+...+..|.
T Consensus 116 ~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 116 ADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp GGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred cccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 64 444455455555 333333344444433333344555554
No 257
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.20 E-value=0.011 Score=57.84 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=27.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
...|+++|++||||||+|..|+++.. ..|+.|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~---~iIsdDs~ 67 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH---RLIADDRV 67 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC---EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC---eEEecchh
Confidence 46789999999999999999998754 45665544
No 258
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.08 E-value=0.0098 Score=58.25 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVM 41 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~La 41 (636)
.+..++.|+|++|||||||++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 356789999999999999999987
No 259
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.08 E-value=0.011 Score=57.08 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998743
No 260
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.08 E-value=0.016 Score=64.82 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=30.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD 54 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D 54 (636)
+...++|+||||+||||+|+.++..++.++..++.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 456789999999999999999999988666666543
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.04 E-value=0.013 Score=60.56 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=26.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
-++|.|+||+|||++|+.+++.++.++..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 4789999999999999999999887665554
No 262
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.03 E-value=0.01 Score=60.53 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHc
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+++.|+||+||||+|+.+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 263
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=94.99 E-value=0.014 Score=60.27 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=47.2
Q ss_pred HHHHhcCccCCCCCeEEEcCc----EEEeccCC----CCCcccccccCCCCccchhcccccc
Q 006654 564 LYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKVHPSDNLPPGTLLCICLSSINKC 617 (636)
Q Consensus 564 ~~~~~~~p~~~~~~~~~~~~~----~~~~~d~~----pk~~~~~l~~~~~~~~~~~~~~~~~ 617 (636)
+++++.|++.. +.|+|-|++ +||++|+. |.+.-|+|+||+...+.||.|+++.
T Consensus 140 v~nIl~~~~E~-e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~ 200 (301)
T 3bl9_A 140 VYNILDKKAEA-DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPE 200 (301)
T ss_dssp HHHHHTTSSSG-GGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGG
T ss_pred HHHHhhCCCcc-ccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHh
Confidence 78899998766 468888888 99999998 8899999999999999999999875
No 264
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=94.93 E-value=0.038 Score=60.71 Aligned_cols=152 Identities=9% Similarity=-0.013 Sum_probs=77.1
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-CC--cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG--TKVQCLTSASSALKKGKSVFLDRCNLEREQR 93 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-~~--~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R 93 (636)
+..+++|||+||+|+| +.++|.+.++..|...-+ .-|.+. .| ..+.-...+.+.+++|+.+|+|- ..
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~T-RpR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~iLdI------d~ 290 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAKS-EPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP 290 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCC-BC----------CBCCHHHHHHHHTTTCEEEECC------CH
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeecC-CCCCcccccccCCcccHHHHHHHHHCCCeEEEEe------CH
Confidence 3467899999999999 999999887643432111 011110 00 00012367788899999999998 22
Q ss_pred HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCccEEEEeCCh--hH
Q 006654 94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRITLCQNE--ND 168 (636)
Q Consensus 94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f-e-~P~~~Egfd~Viii~~~--~~ 168 (636)
+....+ ...-.++.++....+.++|.+| ..|... ..++.++++.+.- + +-.+...|+.+++.++. ..
T Consensus 291 qg~~~l~~~~~~p~~IFI~PPS~e~L~~~-~~rl~~-------~see~~~r~~~~a~~~e~~~~~~fD~vIvNddl~d~a 362 (468)
T 3shw_A 291 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRLCP-------ESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGW 362 (468)
T ss_dssp HHHHHHHHTTCCCEEEEEECSCHHHHHHH-HHHHCT-------TCCCCHHHHHHHHHHHHHHHGGGCSEEEECBTTBCHH
T ss_pred HHHHHHHhcCCCCEEEEEeCcCHHHHHHH-HhccCC-------CCHHHHHHHHHHHHHHHHhhhccCCEEEECCCcHHHH
Confidence 333333 2222334444445566777654 333221 0112333333321 1 11124568888665544 23
Q ss_pred HHHHHHHhc-cCCCCcccC
Q 006654 169 VQAALDTYS-GLGPLDTLP 186 (636)
Q Consensus 169 vdaiv~~~~-~Lgpfd~~p 186 (636)
.+.+..... +-....|+|
T Consensus 363 ~~~L~~ii~~~~~~~~WvP 381 (468)
T 3shw_A 363 YGALKEAIQQQQNQLVWVS 381 (468)
T ss_dssp HHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHhcCCCEEeC
Confidence 444444322 223334566
No 265
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=94.92 E-value=0.016 Score=60.78 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=44.2
Q ss_pred HHHHhcCccCCCCCeEEEcCc----EEEeccCC----CCCcccccccCCCCccchhcccccc
Q 006654 564 LYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKVHPSDNLPPGTLLCICLSSINKC 617 (636)
Q Consensus 564 ~~~~~~~p~~~~~~~~~~~~~----~~~~~d~~----pk~~~~~l~~~~~~~~~~~~~~~~~ 617 (636)
+++++.+++.. +.|||-|++ +||++|+. |.+.-|+|+||+...|.||.|+++.
T Consensus 187 v~nIl~~~~E~-e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~ 247 (350)
T 1vlr_A 187 VYNILDKKAEA-DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPE 247 (350)
T ss_dssp HHHHHTC-----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGG
T ss_pred HHHHhhCCCcc-ccEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHh
Confidence 78899998766 468888888 99999998 8899999999999999999999875
No 266
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.92 E-value=0.045 Score=56.39 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHc
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~ 44 (636)
++|.|+||+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999874
No 267
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.91 E-value=0.061 Score=57.08 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=27.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
+..++.+.|+||||||||+..++... +.....|+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45799999999999999999988653 3344556643
No 268
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.90 E-value=0.02 Score=58.24 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI 56 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i 56 (636)
..++|.|+||+||||+|+.+++.+. .++..++...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4789999999999999999998763 23555664433
No 269
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=94.87 E-value=0.046 Score=57.67 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.4
Q ss_pred CccEEEEEEccCCCcHHHHH-HHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFC-EHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlA-r~Lak~~~ 45 (636)
.+...|++-|+-||||||++ +.|++.++
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999 99988765
No 270
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.82 E-value=0.017 Score=64.04 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
.+..++|.|+||+||||+|+.+++.++..+..++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 34678999999999999999999999855555554
No 271
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.81 E-value=0.014 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.720 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..+++++|+||||||||++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998854
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.80 E-value=0.013 Score=57.80 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+...+++.||||+||||+|..+++.+.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999998865
No 273
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.80 E-value=0.016 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..++.++|++||||||++.+|++.+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999998764
No 274
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.80 E-value=0.063 Score=59.39 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.++.+++|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 275
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.67 E-value=0.062 Score=55.97 Aligned_cols=111 Identities=12% Similarity=0.136 Sum_probs=60.4
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEE---------ee--------hhhhc-CC----CCCcHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---------IC--------QDTIN-KG----KSGTKVQCLTSASS 73 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~---------Is--------~D~ir-~~----~~~~~~~~~~~~~~ 73 (636)
....+..+++.|+||+||||+|+.+++.+...... .+ .|.+. .. .....++ ++.+.+
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~-ir~l~~ 98 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDA-VREVTE 98 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHH-HHHHHH
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHH-HHHHHH
Confidence 44557789999999999999999999886521100 00 11111 11 1112222 233333
Q ss_pred HHh------CCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 74 ALK------KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 74 ~L~------~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
.+. ..+-+|||... ++......+++. .+......+|.+.-..+.+...+..|..
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence 432 12357888854 555555667676 6554444455554444445555666654
No 276
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.62 E-value=0.02 Score=60.01 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=29.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN 57 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir 57 (636)
.++.++.|+|++||||||+++.|+..+. ........|.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 5689999999999999999999886542 233444555543
No 277
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=94.61 E-value=0.51 Score=54.53 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=54.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------------------EEe-ehhhhc----CCCCCcH-------
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARI-CQDTIN----KGKSGTK------- 64 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------------------~~I-s~D~ir----~~~~~~~------- 64 (636)
.++++|+|+|| ||+|+.++|.+.++..+ ..+ +.+.+. ++.+..+
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 35678999998 39999999998764111 112 222221 1111000
Q ss_pred -HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcc
Q 006654 65 -VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRI 126 (636)
Q Consensus 65 -~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p-~e~l~~R~~~R~ 126 (636)
-.-...+.+.+++|+.+|+|. .+.....+ ...-++ .+||+.+| .++|.+ +..|.
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi------~~~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~ 662 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRI 662 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeC------CHHHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccC
Confidence 011245777889999999998 23333333 222233 46667655 455555 65554
No 278
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=94.57 E-value=0.022 Score=50.70 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
..++|-||.++++.|.||.+..|+||+||.-
T Consensus 17 ~~iv~ede~~~af~d~~P~~pgH~LViPk~H 47 (119)
T 3n1s_A 17 SDIVYQDDLVTAFRDISPQAPTHILIIPNIL 47 (119)
T ss_dssp CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred CCEEEECCCEEEEECCCCCCCCeEEEEehhH
Confidence 4599999999999999999999999999975
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.56 E-value=0.02 Score=54.57 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..+++++|++||||||+.+.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999998754
No 280
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.56 E-value=0.019 Score=61.41 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+++.+++++|+|||||||+++.|+..++
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4566899999999999999999998765
No 281
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.55 E-value=0.11 Score=54.70 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=26.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~ 53 (636)
+..++++.|.||+|||||+..++.. .+.++..++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4569999999999999999998765 3334455553
No 282
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=94.52 E-value=0.073 Score=54.73 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=71.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe-eh----hhhcCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCCCCH-
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-CQ----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER- 90 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I-s~----D~ir~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn~~~- 90 (636)
..+.+|++-|.-||||++..+.|.+.+....+.+ .. +.-...+ .+-+....| ..|.-+|+|..-+..
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~~~------ylwR~~~~lP~~G~I~IFdRSwY~~v 146 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKSHD------FLWRIEKQVPAAGMVGVFDRSQYEDV 146 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHTSC------TTHHHHTTCCCTTCEEEEESCGGGGG
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhcCC------HHHHHHHhCCCCCeEEEEeCchhhhH
Confidence 4689999999999999999999999887433333 21 1111111 111222233 678889999844333
Q ss_pred -----------HH-------HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 91 -----------EQ-------RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 91 -----------~~-------R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
.+ -..|..+ ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus 147 lverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~ 205 (289)
T 3rhf_A 147 LIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPS 205 (289)
T ss_dssp THHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGG
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 11 1123333 4678888889999999999999999987654
No 283
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.48 E-value=0.023 Score=58.89 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.++.++.|+|++||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 284
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.48 E-value=0.046 Score=64.39 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=37.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc----------CCCeEEeehhhhcC--CCCCcHHHHHHHHHHHHhCC-C--eEEEeC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTINK--GKSGTKVQCLTSASSALKKG-K--SVFLDR 85 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~----------~~~~~~Is~D~ir~--~~~~~~~~~~~~~~~~L~~G-~--~VIID~ 85 (636)
.-++|+|+||+||||+++.++... +.++..++...+.. ...+.....+..+...+... . .++||.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDE 271 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE 271 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 346899999999999999999876 44455555444432 22334444344444444332 2 356677
Q ss_pred CC
Q 006654 86 CN 87 (636)
Q Consensus 86 tn 87 (636)
.+
T Consensus 272 i~ 273 (854)
T 1qvr_A 272 LH 273 (854)
T ss_dssp C-
T ss_pred HH
Confidence 54
No 285
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=94.48 E-value=0.024 Score=50.27 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=28.9
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
..++|-||.++++.|.||.+..|+||+||.-
T Consensus 18 ~~iv~e~e~~~af~d~~P~~pgH~LViPk~H 48 (119)
T 4egu_A 18 STKVYEDDRVLAFNDLNPVAPYHILVVPKKH 48 (119)
T ss_dssp CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred CCEEEECCCEEEEECCCCCCCceEEEEechh
Confidence 4599999999999999999999999999865
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.48 E-value=0.027 Score=52.75 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+..++.|+|+.|||||||.+.++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4556899999999999999999998763
No 287
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.45 E-value=0.021 Score=59.22 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
++.++.|+|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 288
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.44 E-value=0.02 Score=60.80 Aligned_cols=27 Identities=44% Similarity=0.706 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
....|+|+|+|||||||+++.|++.++
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345688999999999999999998876
No 289
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.41 E-value=0.018 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..++.|+|+||||||||+..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999874
No 290
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.40 E-value=0.029 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.++.++++.|+||||||++|..++..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999987544
No 291
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=94.38 E-value=0.025 Score=50.81 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=29.0
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
..++|-||.++++.|.||.+..|+||+||.-
T Consensus 29 ~~iv~e~e~~~af~d~~P~~pgH~LViPk~H 59 (126)
T 3o1c_A 29 AKIIFEDDQALAFHDISPQAPTHFLVIPKKH 59 (126)
T ss_dssp CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred CCEEEECCCEEEEECCCCCCCceEEEEechH
Confidence 4699999999999999999999999999865
No 292
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.37 E-value=0.18 Score=54.67 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=30.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN 57 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir 57 (636)
++.+|+++|++||||||++..|+..+ +.....++.|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 67889999999999999999998654 3345566766543
No 293
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.35 E-value=0.18 Score=53.34 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=65.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee-hhhhcCC-CC-----Cc----H----H--HHHHHHHHHHhCCCe
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINKG-KS-----GT----K----V--QCLTSASSALKKGKS 80 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is-~D~ir~~-~~-----~~----~----~--~~~~~~~~~L~~G~~ 80 (636)
..+++++|++||||||+.+.|...+.. ..+.++ .+.+... .. .. . . .....+...+.....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 457899999999999999999977652 233343 1222110 00 00 0 0 122445555665545
Q ss_pred EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
+++-+..........+..+ ..+...+.... ..+.....+|+........ ....++.++++.+..
T Consensus 255 ~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H-~~~~~~~~~Rl~~l~~~~~-~~~~~~~~~i~~~l~ 319 (361)
T 2gza_A 255 RILLAELRGGEAYDFINVAASGHGGSITSCH-AGSCELTFERLALMVLQNR-QGRQLPYEIIRRLLY 319 (361)
T ss_dssp EEEESCCCSTHHHHHHHHHHTTCCSCEEEEE-CSSHHHHHHHHHHHHTTST-TGGGSCHHHHHHHHH
T ss_pred EEEEcCchHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHHHHhccc-cccCCCHHHHHHHHH
Confidence 5544434444444434444 44443343333 2456777888886654211 001466666666554
No 294
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.32 E-value=0.0082 Score=70.43 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=35.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT 63 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~ 63 (636)
.+..++|.|+||+||||+|+.++..++.++..++...+...+.+.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~ 554 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTT
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCc
Confidence 445688999999999999999999988777777766655555443
No 295
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.31 E-value=0.029 Score=61.55 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.-++|+|+||+|||++|+.++...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999885
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.26 E-value=0.015 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..++.++|++||||||+++.|...+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999999987653
No 297
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.23 E-value=0.023 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.739 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..+++++|+||||||||+.+++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988754
No 298
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.21 E-value=0.023 Score=57.83 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..+++|+|+||||||||++.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998754
No 299
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.15 E-value=0.079 Score=56.12 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=28.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
+..++++.|+|||||||||.+++... +..+..++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45689999999999999999988643 3456667753
No 300
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.14 E-value=0.038 Score=55.13 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ 53 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~ 53 (636)
+.-++|.|+||+|||++|+.++...+ .++..++.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 34578999999999999999998765 35666764
No 301
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.09 E-value=0.066 Score=56.99 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
...++++.|+||+||||||..++... +.++..++.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45688999999999999999988653 3456667754
No 302
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.04 E-value=0.048 Score=57.45 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=29.5
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
..++.+|+++|.||+||||++.+|+..+ +.....++.|
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3466789999999999999999998664 4445566655
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.03 E-value=0.037 Score=57.81 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=30.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i 56 (636)
.++.+|+++|++|+||||++..|+..+ +.....++.|..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 467899999999999999999988543 345566777754
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.02 E-value=0.032 Score=59.35 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.++.++.|+|++||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467899999999999999999998654
No 305
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.01 E-value=0.051 Score=53.76 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=29.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc--CCCeEEeehhh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS--ARPWARICQDT 55 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~--~~~~~~Is~D~ 55 (636)
.++.++++.|.+|+||||++..|+..+ +.....++.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356789999999999999999998654 44566677653
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.90 E-value=0.036 Score=56.07 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.+..+++++|++||||||+.+.++..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455789999999999999999988654
No 307
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.89 E-value=0.036 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
....|+|+|++|||||||.+.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998653
No 308
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=93.89 E-value=0.037 Score=48.89 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=28.9
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
..++|-||.++++.|.||.+..|+||+||.-
T Consensus 21 ~~iv~e~~~~~af~d~~P~~pgH~LViPk~H 51 (117)
T 3oj7_A 21 STIVYEDDEIFAFKDINPIAPIHILVIPKQH 51 (117)
T ss_dssp CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred CCEEEECCcEEEEECCCCCCCceEEEEechH
Confidence 4599999999999999999999999999865
No 309
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.029 Score=58.70 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=24.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...|..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467778999999999999999999876
No 310
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.87 E-value=0.092 Score=60.88 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV 97 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-~~~~~R~~l~ 97 (636)
-++|.|+||+|||++|+.+++.+ +.++..++...+..........+...+. ...+..+++|... +.......+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~--~~~~~vl~lDEi~~~~~~~~~~Ll 600 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR--RKPYSVVLLDAIEKAHPDVFNILL 600 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH--HCSSSEEEEECGGGSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH--hCCCeEEEEeCccccCHHHHHHHH
Confidence 58999999999999999999886 3567888876666544333222212211 1234467888754 3334444444
Q ss_pred Hh
Q 006654 98 KL 99 (636)
Q Consensus 98 ~l 99 (636)
.+
T Consensus 601 ~~ 602 (758)
T 3pxi_A 601 QV 602 (758)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.87 E-value=0.031 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=23.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45678999999999999999998765
No 312
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.83 E-value=0.12 Score=54.39 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=27.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
+..++++.|+|||||||||.+++... +.....++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45689999999999999999988543 3345566654
No 313
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.78 E-value=0.037 Score=53.08 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=26.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI 56 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i 56 (636)
.-|++.|++|+||||+|..|.++ | +..++.|.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G--~~lvaDD~v 49 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-G--HQLVCDDVI 49 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-C--CeEecCCEE
Confidence 34789999999999999999985 4 566766654
No 314
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.78 E-value=0.096 Score=60.58 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=40.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----------CCCeEEeehhhhc--CCCCCcHHHHHHHHHHHHhC--CCeEEEe
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTIN--KGKSGTKVQCLTSASSALKK--GKSVFLD 84 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----------~~~~~~Is~D~ir--~~~~~~~~~~~~~~~~~L~~--G~~VIID 84 (636)
.+.-++|+|+||+||||+++.++... +..+..++...+. ....+.....+..+...+.. +..++||
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID 285 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34457899999999999999999875 2112222222222 12344555445555555544 3346788
Q ss_pred CCCC
Q 006654 85 RCNL 88 (636)
Q Consensus 85 ~tn~ 88 (636)
..+.
T Consensus 286 Ei~~ 289 (758)
T 1r6b_X 286 EIHT 289 (758)
T ss_dssp TTTT
T ss_pred chHH
Confidence 8653
No 315
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.77 E-value=0.044 Score=53.63 Aligned_cols=102 Identities=10% Similarity=0.051 Sum_probs=59.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeeh-hhhcC------CCC-----------CcHH-HHH---HH----
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQ-DTINK------GKS-----------GTKV-QCL---TS---- 70 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~-D~ir~------~~~-----------~~~~-~~~---~~---- 70 (636)
.++.+|+++|.|||||+|+|+.+.+.++. .+..++. |.++. +.. ..+. .+. ..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999999999887752 2444542 43431 000 0011 110 11
Q ss_pred -----HHHHHh--CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 006654 71 -----ASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS 122 (636)
Q Consensus 71 -----~~~~L~--~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~ 122 (636)
+...+. ....||||+ -+.......+... .+..+.+|.+..+.++-.+|.
T Consensus 89 d~~~~~~~~~~~~~~~~vII~d-vR~~~Ev~~fr~~--~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSD-TRRVSDIQWFREA--YGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECC-CCSHHHHHHHHHH--HGGGEEEEEEEECHHHHHHTT
T ss_pred CchHHHHHHHHhcCCCcEEEeC-CCCHHHHHHHHHh--CCCcEEEEEEECCHHHHHHHh
Confidence 111111 113689999 4455554444333 233467889999999988883
No 316
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.75 E-value=0.16 Score=56.20 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=64.7
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHHHcCCC-eEEeeh----hhhcCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCC---
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCN--- 87 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is~----D~ir~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn--- 87 (636)
...+.+|++-|.-||||+|..+.|.+.+... +.++.. +.-...+. +....+.| ..|.-+|.|..-
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~y------l~R~~~~lP~~G~IvIfdRSwYs~ 113 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPP------QWRFWRRLPPKGRTGIFFGNWYSQ 113 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCT------THHHHHHCCCTTCEEEEESCHHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCCh------hhhHHHhCCCCCeEEEEeCchhhH
Confidence 3578999999999999999999999988733 222221 11111111 11122223 578889999832
Q ss_pred ---------CCHHH---HHH----HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654 88 ---------LEREQ---RTD----FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE 129 (636)
Q Consensus 88 ---------~~~~~---R~~----l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~ 129 (636)
....+ +.. |..+ ...|+.+..++|+++.++..+|+..|...+
T Consensus 114 ~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 114 MLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 22221 111 2233 467888899999999999999999997754
No 317
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.73 E-value=0.036 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.++++.|+|||||||++-+++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999997776553
No 318
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.66 E-value=0.2 Score=51.74 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=54.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC------CCeEEeehhhhcCCCCCcHHHHHHHHHHHHh------CCCeEEEeCCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA------RPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCN 87 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~------~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~------~G~~VIID~tn 87 (636)
+..+++.|+||+||||+|+.+++..+ ..+..++.+ +....-+++ +.+.+.+. ..+-+|||...
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~i-r~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDI-RTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHH-HHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHH-HHHHHHHhhccccCCceEEEeccHH
Confidence 55789999999999999999998632 123334321 111122222 22333332 12357888854
Q ss_pred -CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654 88 -LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR 125 (636)
Q Consensus 88 -~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R 125 (636)
++......+++. .+......+|........+..-+..|
T Consensus 93 ~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 93 RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred HhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 555666666666 55443444444433322333334444
No 319
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.57 E-value=0.031 Score=55.55 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678999999999999999887543
No 320
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.52 E-value=0.041 Score=63.80 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.-++|+|+||+|||++|+.+++.+
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999886
No 321
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.52 E-value=0.032 Score=56.40 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...+++|+|+||||||||+..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998864
No 322
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.51 E-value=0.51 Score=51.25 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~ 53 (636)
+..++++.|+||+|||||+..++... +.++..++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45699999999999999999987542 335555653
No 323
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.50 E-value=0.035 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
++.|+|++||||||+.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999988654
No 324
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.32 E-value=0.041 Score=55.02 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHc
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.++.|+|++||||||+.+.++-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999998654
No 325
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.31 E-value=0.23 Score=51.12 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred cccCccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 15 EKKWKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+.++++-.|.++|.||+|||||..+|...
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34566778999999999999999999753
No 326
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.24 E-value=0.034 Score=54.86 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++-..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999987543
No 327
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.22 E-value=0.19 Score=51.27 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT 55 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ 55 (636)
.++++.|++|+||||+++++++..+..+..++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999988764555666543
No 328
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.12 E-value=0.069 Score=53.58 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC 52 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is 52 (636)
.+|.|+|.+||||||+|+.|.+.+| +.++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g--~~~~~ 31 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC--EEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CeEEe
Confidence 4789999999999999999998887 54454
No 329
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.10 E-value=0.041 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34688999999999999999987543
No 330
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.09 E-value=0.03 Score=57.79 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHcC
Q 006654 23 VIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
++|.|+||+|||++|+.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999876
No 331
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.07 E-value=0.049 Score=53.06 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=25.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH----cCCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~----~~~~~~~Is~ 53 (636)
+..++++.|.||+|||+||-+++.. .+.+...++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4579999999999999999987643 2334444553
No 332
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.00 E-value=0.06 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..++...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4556899999999999999999864
No 333
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.93 E-value=0.081 Score=55.52 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+...++++.|+|||||||||..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999876
No 334
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.90 E-value=0.051 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987544
No 335
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.85 E-value=0.067 Score=55.30 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=37.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhh----cCCCCCcHHHHHHHHHHHHhCCCeEEEeCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTI----NKGKSGTKVQCLTSASSALKKGKSVFLDRC 86 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~i----r~~~~~~~~~~~~~~~~~L~~G~~VIID~t 86 (636)
..-++|.|+||+|||++|..++..+. .++..++...+ .... ... . .......+.....+|||..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~-~~~-~-~~~~~~~~~~~~lLiiDdi 223 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAI-SNG-S-VKEEIDAVKNVPVLILDDI 223 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCC-C------CCTTHHHHTSSEEEEETC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHh-ccc-h-HHHHHHHhcCCCEEEEcCC
Confidence 45688999999999999999986543 44444554332 1111 000 0 1112234455567899985
No 336
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.83 E-value=0.065 Score=54.62 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=24.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
++..-|+|.||||+|||++|..|+..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4455799999999999999999998754
No 337
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.82 E-value=0.047 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++...
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999987544
No 338
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.81 E-value=0.069 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+...|+++|.+||||||+..+|+....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999987753
No 339
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.74 E-value=0.047 Score=55.39 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++-..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34678999999999999999987543
No 340
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.73 E-value=0.41 Score=51.79 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=27.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~ 53 (636)
+..++++.|+||+||||||..++... +.++..++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45699999999999999999987542 345556664
No 341
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.73 E-value=0.068 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak 42 (636)
..|+++|+||+||||+.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999975
No 342
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.72 E-value=0.068 Score=55.51 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=23.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++++.|+|||||||||.+++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45689999999999999999998764
No 343
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.72 E-value=0.068 Score=56.89 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.+..+++++|++||||||+.+.++..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999988654
No 344
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.69 E-value=0.32 Score=52.96 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=26.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ 53 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~ 53 (636)
+..++++.|.||+||||||-+++... +.++..++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 45799999999999999999987543 334555553
No 345
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.67 E-value=0.065 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...+.|+|++|||||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998876
No 346
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.64 E-value=0.044 Score=55.99 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++-..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678999999999999999987544
No 347
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.62 E-value=0.052 Score=55.06 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++...
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44678999999999999999987544
No 348
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.59 E-value=0.047 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..++.|+|++|||||||.+.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998754
No 349
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.54 E-value=0.064 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..++.|+|++|||||||.+.++-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999998864
No 350
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.53 E-value=0.062 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..++.|+|++|||||||.+.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998863
No 351
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.53 E-value=0.081 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++..|+++|.+|+|||||.++|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999863
No 352
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.52 E-value=0.049 Score=54.58 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+..++.|+|++||||||+.+.++....
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346789999999999999999876543
No 353
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.50 E-value=0.05 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999987654
No 354
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.49 E-value=0.28 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak 42 (636)
..|+|+|.||+|||||..+|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999999864
No 355
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=92.47 E-value=0.083 Score=48.02 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.1
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhcc
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSS 613 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~ 613 (636)
..++|-|+.++++.|.+|.+..|+||+||.- ...|.|
T Consensus 19 ~~iV~e~~~~~af~d~~P~~pgH~LViPk~H-~~~l~d 55 (138)
T 3p0t_A 19 GRFVYEDDDVVAFLTIEPMTQGHTLVVPREE-IDNWQD 55 (138)
T ss_dssp CCEEEECSSEEEEECSSCSSTTCEEEEESSC-CCCGGG
T ss_pred cCEEEeCCCEEEEecCCCCCCcEEEEEEhHH-hCchhh
Confidence 3599999999999999999999999999865 333433
No 356
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=92.47 E-value=0.071 Score=49.01 Aligned_cols=29 Identities=14% Similarity=-0.029 Sum_probs=27.7
Q ss_pred CeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654 577 DLLEISDDVVVLNDLYPKVHPSDNLPPGT 605 (636)
Q Consensus 577 ~~~~~~~~~~~~~d~~pk~~~~~l~~~~~ 605 (636)
.++|-|+.++++.|.+|.+..|+||+||.
T Consensus 14 ~iv~e~~~~~a~~d~~p~~pgh~LViPk~ 42 (147)
T 1fit_A 14 VVFLKTELSFALVNRKPVVPGHVLVCPLR 42 (147)
T ss_dssp GEEEECSSEEEEECSSCSSTTCEEEEESS
T ss_pred EEEEECCCEEEEECCCCCCCcEEEEEEcc
Confidence 38999999999999999999999999996
No 357
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.44 E-value=0.057 Score=54.94 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+..++.|+|++|||||||.+.|+....
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446789999999999999999876543
No 358
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.42 E-value=0.064 Score=56.52 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++.|+|+||||||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 359
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.42 E-value=0.085 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.-|+++|.+|+||||+..++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 360
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.40 E-value=0.052 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++.|+|++||||||+.+.++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999987544
No 361
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.38 E-value=0.12 Score=53.13 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=29.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI 56 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i 56 (636)
++.++.++|++|+||||++..|+..+ +.....++.|..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 57788899999999999999988543 334555666653
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.37 E-value=0.059 Score=54.42 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44688999999999999999987543
No 363
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.36 E-value=0.075 Score=55.74 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+..++.|+|+|||||||+.+.|...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999854
No 364
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.34 E-value=0.088 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.-|+++|.||+|||||..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998854
No 365
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.34 E-value=0.09 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+...|+++|.+|+||||+..+++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45678889999999999999998764
No 366
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.34 E-value=0.06 Score=54.36 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|+.|||||||.+.|+-..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44688999999999999999987544
No 367
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.30 E-value=0.055 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|+.||||||+.+.++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999988654
No 368
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=92.30 E-value=0.089 Score=48.78 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhcc
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSS 613 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~ 613 (636)
..++|-||.++++.|.+|.+..|+||+||.- ..+|.|
T Consensus 25 ~~iV~ed~~~~af~d~~P~~pgH~LViPk~H-~~~l~d 61 (149)
T 3ksv_A 25 CAKVAETSKALAFMDINPLSRGHMLVIPKEH-ASCLHE 61 (149)
T ss_dssp CCEEEECSSEEEEECSSCSSTTCEEEEESSC-CSSGGG
T ss_pred ccEEEECCCEEEEECCCCCCCCEEEEEeChh-hhhhhh
Confidence 4599999999999999999999999999975 344433
No 369
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.23 E-value=0.069 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...|+++|++|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.22 E-value=0.07 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+.+.+++|+.||||||+.++|.--++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34889999999999999999987654
No 371
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.20 E-value=0.063 Score=54.34 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|+.|||||||.+.++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44678999999999999999987543
No 372
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.20 E-value=0.052 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..++.|+|+.||||||+.+.++...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999987544
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.17 E-value=0.11 Score=47.15 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.++.-|+++|.+|+|||||..++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999753
No 374
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.14 E-value=0.089 Score=55.75 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=52.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeehhhhc---CCC--------CCc-HHHHHHHHHHHHhCCCe-EE
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTIN---KGK--------SGT-KVQCLTSASSALKKGKS-VF 82 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~D~ir---~~~--------~~~-~~~~~~~~~~~L~~G~~-VI 82 (636)
+..+++++|++||||||+.+.++..... .......|.+. ... .+. ...+...+.++|..... ++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 3458999999999999999998765421 11112122211 000 000 01122455666765554 55
Q ss_pred EeCCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHH
Q 006654 83 LDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSV 123 (636)
Q Consensus 83 ID~tn~~~~~R~~l~~l~~~g~~v~vV~L-d~p~e~l~~R~~ 123 (636)
+|- +...+....+.++...|..+ ++.+ +.+......|+.
T Consensus 202 lDE-p~d~e~~~~~~~~~~~G~~v-l~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 202 VGE-MRDLETIRLALTAAETGHLV-FGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp ESC-CCSHHHHHHHHHHHHTTCEE-EEEESCSSHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHhcCCEE-EEEEccChHHHHHHHHh
Confidence 555 66766665555552224433 2233 333334445554
No 375
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=92.14 E-value=0.72 Score=48.38 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=56.2
Q ss_pred EEEEccCCCcHHH-------HHHHHHHHcCCC--eEEeehhhhcCC-----------------CCCcHHHHH---HHHHH
Q 006654 23 VIMVGAPGSGKST-------FCEHVMRSSARP--WARICQDTINKG-----------------KSGTKVQCL---TSASS 73 (636)
Q Consensus 23 IvLvG~PGSGKST-------lAr~Lak~~~~~--~~~Is~D~ir~~-----------------~~~~~~~~~---~~~~~ 73 (636)
|+|+||.+.|==+ +-..+.++++.. +.++..|.-..+ ..+....+. ..+.+
T Consensus 145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~ 224 (337)
T 4dey_A 145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFE 224 (337)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCHHHHHHHHHHHHH
T ss_pred eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHH
Confidence 7899999999764 455566777743 333333322111 111223333 34444
Q ss_pred HHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654 74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE 127 (636)
Q Consensus 74 ~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~ 127 (636)
..+.|+.+|+|--.-+ ....+ +.....+.++....+.++|.+|+..|+.
T Consensus 225 v~~~Gk~vILDIDvQn-----Ga~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt 274 (337)
T 4dey_A 225 LARTLQLVVLDADTIN-----HPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK 274 (337)
T ss_dssp HTTTCCEEEEEETTCC-----SGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCH
T ss_pred HHhCCCEEEEEeCcHH-----HHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCc
Confidence 5568899999983210 22233 3333334444445678999999999975
No 376
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.11 E-value=0.052 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
+...|+|+|++|||||||.+.|..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999998763
No 377
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=92.10 E-value=0.065 Score=49.69 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654 564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGT 605 (636)
Q Consensus 564 ~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~ 605 (636)
|-+++.. |. +..++|.||.++++.|.||.+..|+||+||.
T Consensus 39 FC~ii~~-e~-~~~iV~e~e~~~af~d~~P~~pgH~LViPkr 78 (147)
T 1xqu_A 39 FCKIIKR-EL-PSTIYYEDERVIAIKDINPAAPVHVLIIPKE 78 (147)
T ss_dssp HHHHHTT-SS-CBCEEEECSSEEEEECSSCSSSEEEEEEESS
T ss_pred ccccccC-CC-CcEEEEECCcEEEEEecCCCCccEEEEEeCc
Confidence 4444433 22 3469999999999999999999999999996
No 378
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.10 E-value=0.081 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
-|+++|.+|+||||+..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 379
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.08 E-value=0.093 Score=47.06 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+.-|+++|.+|+|||||..++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 380
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.03 E-value=0.22 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++.+.|+||||||||+-+++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999887654
No 381
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.00 E-value=0.062 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++|||||||.+.++-..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999987544
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.99 E-value=0.14 Score=53.66 Aligned_cols=37 Identities=32% Similarity=0.321 Sum_probs=27.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD 54 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D 54 (636)
.+..+|.++|+||+||||+...|+..+ +.....++.|
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 456788999999999999999997543 3334445544
No 383
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=91.98 E-value=0.21 Score=55.35 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=69.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcCCC-eEEee----hhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCH--
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARIC----QDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLER-- 90 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is----~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~-- 90 (636)
..+.+|++-|.-||||+|..+.|.+.+... +.++. ++.-...+.. + +.....-..|.-+|.|..-+..
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~~~yl-~----R~~~~lP~~G~i~IfDRswY~~~~ 372 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQPYL-W----RFWRHIPARRQFTIFDRSWYGRVL 372 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHTSCTT-H----HHHTTCCCTTCEEEEESCGGGGGT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhcchHH-H----HHHHhCCCCCeEEEEeCcchhhHH
Confidence 478999999999999999999999887632 22222 1111111111 1 1111122578889999844332
Q ss_pred ----------HHHH-H------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654 91 ----------EQRT-D------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130 (636)
Q Consensus 91 ----------~~R~-~------l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~ 130 (636)
.+.. . |... ...|+.+..++|+++.++..+|...|...+.
T Consensus 373 v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~ 430 (500)
T 3czp_A 373 VERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPY 430 (500)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 2111 1 2222 4567888899999999999999999987544
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.097 Score=47.26 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
..-|+++|.+|+|||||..++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34589999999999999999985
No 385
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.96 E-value=0.093 Score=47.95 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++..|+++|.+|+|||||..++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566899999999999999999753
No 386
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.95 E-value=0.11 Score=48.08 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++.-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4566899999999999999999865
No 387
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.94 E-value=0.094 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...|+|+|.||+|||||.++|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999854
No 388
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.94 E-value=0.11 Score=47.55 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++.-|+++|.+|+|||||..++...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4566899999999999999998743
No 389
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.93 E-value=0.12 Score=59.64 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=30.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN 57 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir 57 (636)
-++|.|+||+|||++|+.+++.++.++..++...+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 689999999999999999999998777778765553
No 390
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.87 E-value=0.064 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+..++.|+|++|||||||.+.|+-...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345789999999999999999876543
No 391
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.84 E-value=0.11 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||.+++...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457899999999999999999865
No 392
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.84 E-value=0.066 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999987654
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.83 E-value=0.11 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..++...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4566899999999999999999864
No 394
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.82 E-value=0.092 Score=54.07 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=26.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEee
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARIC 52 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is 52 (636)
+.-|+|.|+||+|||++|+.+..... .+++.++
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 34578999999999999999998653 3566665
No 395
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.82 E-value=0.1 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++.-|+++|.+|+|||||..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4556899999999999999999854
No 396
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=91.74 E-value=0.1 Score=47.39 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhcc
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSS 613 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~ 613 (636)
..++|-||.++++.|.+|.+..|+||+||.- ...|.|
T Consensus 18 ~~iv~e~~~~~af~d~~p~~pgh~lViPk~H-~~~l~d 54 (135)
T 3r6f_A 18 ANIIYETDRLFALIDRYPLSKGHFLVIPKAH-HPYLHN 54 (135)
T ss_dssp CSCCEECSSEEEEECSSCSSTTCEEEEESSC-CSSGGG
T ss_pred ceEEEECCCEEEEECCCCCCCCeEEEEEhhH-hCCHhH
Confidence 4599999999999999999999999999975 344444
No 397
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.74 E-value=0.1 Score=54.93 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...+|.|+|+||||||||...|...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 398
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.67 E-value=0.1 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...-|+++|++|+|||||..+|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998753
No 399
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.67 E-value=0.11 Score=46.93 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||.+++...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456899999999999999999854
No 400
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.65 E-value=0.12 Score=47.73 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||.+++...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999854
No 401
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.60 E-value=0.12 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
+.-|+++|.||+|||||.+++..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45689999999999999999874
No 402
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.60 E-value=0.11 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.-|+++|.+|+|||||.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 403
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.59 E-value=0.11 Score=48.45 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
....|+++|++|+|||||..++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998653
No 404
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.59 E-value=0.075 Score=56.42 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=22.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+..-|+|.|.+||||||+++++.--++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456789999999999999999854444
No 405
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.58 E-value=0.091 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHc
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.+.++|++|||||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
No 406
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.53 E-value=0.11 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.-|+++|.+|+|||||..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999854
No 407
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.52 E-value=0.094 Score=55.68 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+||+||||||+.+.++--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34678999999999999999998654
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.49 E-value=0.12 Score=47.54 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+.-|+++|.+|+|||||..++...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999864
No 409
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.45 E-value=0.098 Score=47.36 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=18.4
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVM 41 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~La 41 (636)
-|+++|.||+|||||..++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 410
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.45 E-value=0.081 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.782 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak 42 (636)
-|+++|.+|+|||||.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.44 E-value=0.092 Score=47.39 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=18.2
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVM 41 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~La 41 (636)
-|+++|.||+|||||.+++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999885
No 412
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.44 E-value=0.11 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++.-|+++|.+|+|||||..++...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999863
No 413
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.44 E-value=0.12 Score=51.11 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=22.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
.+..++++.|+|||||||.+..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345789999999999999999887665
No 414
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.43 E-value=0.11 Score=47.37 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
...-|+++|.+|+|||||..+|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999863
No 415
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.42 E-value=0.11 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+..++++.|.||+|||||+..++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998864
No 416
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=91.40 E-value=0.12 Score=48.60 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 563 ALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 563 a~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
-|-+++..- -+..++|-||.++++.|.+|.+..|+||+||.-
T Consensus 31 iFC~i~~~e--~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H 72 (161)
T 3lb5_A 31 IFAKLIRNE--IPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKG 72 (161)
T ss_dssp HHHHHHTTS--SCCCEEEECSSEEEEECSSCSSTTCEEEEESSC
T ss_pred cccccccCC--CCccEEEECCCEEEEECCCcCCCcEEEEEEeec
Confidence 344555442 224599999999999999999999999999965
No 417
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.32 E-value=0.13 Score=55.76 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
.+..+++++|++||||||+.+.+.....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999987764
No 418
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=91.30 E-value=0.14 Score=46.83 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=28.2
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGT 605 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~ 605 (636)
..++|.++.++++.|.+|.+..|+||+||.
T Consensus 19 ~~iv~e~~~~~a~~~~~p~~pgh~LViPk~ 48 (145)
T 1y23_A 19 SAKVYEDEHVLAFLDISQVTKGHTLVIPKT 48 (145)
T ss_dssp CCEEEECSSEEEEECTTCSSTTCEEEEESS
T ss_pred CCEEEECCCEEEEECCCCCCCCeEEEEEhh
Confidence 459999999999999999999999999995
No 419
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.27 E-value=0.13 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.-|+++|.+|+|||||..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999853
No 420
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.26 E-value=0.13 Score=46.49 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..-|+++|.+|+|||||.+++....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998653
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.19 E-value=0.14 Score=46.81 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..+.-|+++|.+|+|||||..++...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999999764
No 422
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.18 E-value=0.12 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...++++.|+|||||||||.+++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999875
No 423
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.17 E-value=0.12 Score=47.04 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..++...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999854
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.15 E-value=0.13 Score=47.01 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+.-|+++|.+|+|||||..++...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999864
No 425
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.14 E-value=0.14 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..++...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467899999999999999999864
No 426
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.13 E-value=0.16 Score=51.73 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=26.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ 53 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~ 53 (636)
.++++.|++|+||||+++++++..+ +..++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 5789999999999999999998875 555653
No 427
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.12 E-value=0.074 Score=58.95 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHcC
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
-++|.|+||+|||++|+.++...+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 478999999999999999998775
No 428
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.10 E-value=0.11 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.|+--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 44688999999999999999998654
No 429
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.08 E-value=0.11 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVM 41 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~La 41 (636)
.++.-|+++|.+|+|||||..++.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456779999999999999999886
No 430
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.06 E-value=0.11 Score=56.06 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...++.|+|+||||||||+..++-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3568999999999999999988643
No 431
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.05 E-value=0.11 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++.|+|++||||||+.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 44678999999999999999998544
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.04 E-value=0.15 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
....-|+++|.+|+|||||..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567899999999999999999864
No 433
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.03 E-value=0.13 Score=46.78 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+.-|+++|.+|+|||||..++...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999853
No 434
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.03 E-value=0.14 Score=48.09 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=22.4
Q ss_pred ccCccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 16 KKWKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
......-|+++|.+|+|||||..++...
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcC
Confidence 3344567999999999999999999864
No 435
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.03 E-value=0.13 Score=47.92 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..+|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556899999999999999999753
No 436
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.01 E-value=0.12 Score=47.49 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999999843
No 437
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=90.99 E-value=0.14 Score=47.26 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=28.9
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
..++|-|+.++++-|.+|.+..|+||+||.-
T Consensus 19 ~~iv~e~~~~~af~d~~p~~pgh~lViPk~H 49 (149)
T 3o0m_A 19 AIRIYEDENFLGILDIRPFTRGHTLVIPKTH 49 (149)
T ss_dssp CCEEEECSSEEEEECSSCSSTTCEEEEESSC
T ss_pred CCEEEECCCEEEEEcCCCCCCCeEEEEechh
Confidence 4599999999999999999999999999965
No 438
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.98 E-value=0.14 Score=47.46 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||.+++...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4566899999999999999999864
No 439
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.98 E-value=0.14 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+.-|+++|.+|+|||||..+|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 440
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=90.97 E-value=0.15 Score=46.92 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=28.4
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGT 605 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~ 605 (636)
..++|.++.++++.|.+|.+..|+||+||.
T Consensus 13 ~~iv~e~~~~~a~~d~~p~~pgh~lViPk~ 42 (149)
T 2eo4_A 13 GYFVYEDEKFAAILDKYPVSLGHTLVIPKK 42 (149)
T ss_dssp CCEEEECSSEEEEECSSCSSTTCEEEEESS
T ss_pred ccEEEECCCEEEEECCCCCCCCeEEEEech
Confidence 469999999999999999999999999997
No 441
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.93 E-value=0.1 Score=52.95 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
..++.|+|++|||||||.+.++-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999987543
No 442
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.91 E-value=0.12 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++--.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44678999999999999999988644
No 443
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.90 E-value=0.12 Score=54.96 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++.|+|++||||||+.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44678999999999999999998654
No 444
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.86 E-value=0.15 Score=47.50 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=22.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
....-|+++|.+|+|||||.+++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45677999999999999999998754
No 445
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.82 E-value=0.082 Score=54.89 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=22.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
+..++.|+|++||||||+.+.|+..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 346789999999999999999886554
No 446
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.78 E-value=0.58 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...|+++|.||+|||||..+|...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999853
No 447
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.78 E-value=0.16 Score=46.72 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999854
No 448
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.76 E-value=0.11 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|+.||||||+.+.++...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44678999999999999999987554
No 449
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.72 E-value=0.13 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
-.+++++|+.||||||+.+.|....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4578999999999999999998654
No 450
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.69 E-value=0.16 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999999865
No 451
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.68 E-value=0.15 Score=45.96 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 006654 23 VIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 23 IvLvG~PGSGKSTlAr~Lak~ 43 (636)
|+++|.+|+|||||..++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 452
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.68 E-value=0.13 Score=54.93 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++--.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44688999999999999999998544
No 453
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.66 E-value=0.12 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++.|+|++||||||+.+.++--.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34678999999999999999998544
No 454
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.64 E-value=0.16 Score=46.63 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456899999999999999999864
No 455
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.64 E-value=0.56 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak 42 (636)
.|+|+|.||+|||||..+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999864
No 456
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.18 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..+|...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4456899999999999999999863
No 457
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.60 E-value=0.15 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999754
No 458
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.59 E-value=0.14 Score=47.37 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+..-|+++|.+|+|||||..++...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999854
No 459
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=90.58 E-value=0.17 Score=46.51 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=28.7
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
..++|-|+.++++-|.+|.+..|+||+||.-
T Consensus 23 ~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H 53 (147)
T 3imi_A 23 CSKVYEDEHVLAFLDISQVTKGHTLVIPKVH 53 (147)
T ss_dssp CCEEEECSSEEEEECTTCSSTTCEEEEESSC
T ss_pred CCEEEECCCEEEEEcCCCCCCcEEEEEEeec
Confidence 3499999999999999999999999999864
No 460
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.57 E-value=0.1 Score=55.08 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..++.|+|++||||||+.+.++--.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34678999999999999999998543
No 461
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.47 E-value=0.13 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 006654 22 LVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 22 LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
-|+++|.+|+|||||..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998753
No 462
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.35 E-value=0.13 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++.|+|++||||||+.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34678999999999999999998543
No 463
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.30 E-value=0.13 Score=54.02 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.5
Q ss_pred ccEEEEE--EccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIM--VGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvL--vG~PGSGKSTlAr~Lak~~ 44 (636)
.+..+++ .|+||+||||+++.+++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 5667888 9999999999999998765
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.22 E-value=0.2 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
+..+++++|++||||||.+-.++.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34799999999999999999888765
No 465
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.21 E-value=0.19 Score=47.16 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999854
No 466
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.20 E-value=0.15 Score=54.79 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
+..++.|+|++||||||+.+.|+.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 446889999999999999999875
No 467
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.19 E-value=0.19 Score=46.65 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..+|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999864
No 468
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.15 E-value=0.16 Score=46.62 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999753
No 469
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.11 E-value=0.21 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988764
No 470
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.10 E-value=0.14 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 21 ILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 21 ~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..++|+|+||+||||+|+.++...+
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999998875
No 471
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.08 E-value=0.17 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+.-|+|+|.+|+|||||...|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3467899999999999999998854
No 472
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=90.05 E-value=0.2 Score=47.71 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=28.8
Q ss_pred CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654 576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL 606 (636)
Q Consensus 576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~ 606 (636)
..+||-|+.++++-|.+|.+..|+||+||.-
T Consensus 50 ~~iV~e~e~~~afld~~P~~pgH~LVIPkrH 80 (173)
T 3l7x_A 50 SSKVYEDEDVLAFLDISQATKGHTLVIPKEH 80 (173)
T ss_dssp CCEEEECSSEEEEECTTCSSTTCEEEEESSC
T ss_pred ceEEEECCCEEEEEcCCCCCCcEEEEEeccc
Confidence 3599999999999999999999999999965
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.94 E-value=0.13 Score=56.98 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=0.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVM 41 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~La 41 (636)
.+..++.|+|++|||||||++.++
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
No 474
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.90 E-value=0.19 Score=46.51 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
.+..-|+++|.+|+|||||..++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3556789999999999999999874
No 475
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.90 E-value=0.2 Score=46.46 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+..-|+++|.+|+|||||..++...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45667899999999999999999843
No 476
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.89 E-value=0.11 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...++.|+|++||||||+.+.++--.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34688999999999999999988543
No 477
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.87 E-value=0.19 Score=46.00 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999854
No 478
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.86 E-value=0.18 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
++.-|+++|.||+||||+.+++...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999999863
No 479
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.86 E-value=0.21 Score=46.50 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999999754
No 480
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.86 E-value=0.48 Score=62.11 Aligned_cols=85 Identities=14% Similarity=-0.019 Sum_probs=55.9
Q ss_pred CccchhhhhhhccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEE
Q 006654 3 TDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVF 82 (636)
Q Consensus 3 ~~~~~~~~~~~~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VI 82 (636)
+.+.+.|+......-....=+.+.||||+|||++++.|++.+|+++.+++-+.-. ....+......++..|.-++
T Consensus 628 TPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l-----d~~~lg~~~~g~~~~Gaw~~ 702 (2695)
T 4akg_A 628 TPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF-----DYQVLSRLLVGITQIGAWGC 702 (2695)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC-----CHHHHHHHHHHHHHHTCEEE
T ss_pred cHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC-----ChhHhhHHHHHHHhcCCEee
Confidence 3455666665443333333456899999999999999999999888777643211 22233344455567777778
Q ss_pred EeCCCCCHHH
Q 006654 83 LDRCNLEREQ 92 (636)
Q Consensus 83 ID~tn~~~~~ 92 (636)
+|..|+....
T Consensus 703 ~DE~nr~~~e 712 (2695)
T 4akg_A 703 FDEFNRLDEK 712 (2695)
T ss_dssp EETTTSSCHH
T ss_pred ehhhhhcChH
Confidence 8888876643
No 481
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.81 E-value=0.1 Score=54.52 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=60.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeeh-hhhcC----CC---C--CcHHHHHHHHHHHHh-CCCeEEEeCC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-DTINK----GK---S--GTKVQCLTSASSALK-KGKSVFLDRC 86 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~-D~ir~----~~---~--~~~~~~~~~~~~~L~-~G~~VIID~t 86 (636)
..+++++|++||||||+.+.|+..... ..+.++. +.+.- .. . +...+ ...+.++|. +..-+|+|-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~-r~~la~aL~~~p~ilildE- 248 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITS-ADCLKSCLRMRPDRIILGE- 248 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCH-HHHHHHHTTSCCSEEEECC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhH-HHHHHHHhhhCCCEEEEcC-
Confidence 457899999999999999999876542 2344432 22211 00 0 11111 233344554 444567776
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654 87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ 146 (636)
Q Consensus 87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~ 146 (636)
+...+....+..+...+..+.++.=+.+......|+..-..-.. ....++.+.++++..
T Consensus 249 ~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~-~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 249 LRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS-AARNIKFESLIEGFK 307 (330)
T ss_dssp CCSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG-GGTTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc-ccCCCCHHHHHHHHH
Confidence 44444444343442222222222223445555666653322100 001466666666654
No 482
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.80 E-value=0.21 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999999864
No 483
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.77 E-value=0.2 Score=46.75 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 18 WKQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 18 ~~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
.+..-|+++|.+|+|||||..++...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999864
No 484
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.75 E-value=0.19 Score=46.47 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
...-|+++|.+|+|||||.+.+...+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345689999999999999987765543
No 485
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.67 E-value=0.22 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..++...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4467899999999999999999864
No 486
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.66 E-value=0.22 Score=46.46 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..++...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4457899999999999999999854
No 487
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.66 E-value=0.17 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRSSA 45 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~~~ 45 (636)
..++.++|++||||||+.+.|. ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3578999999999999999999 543
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.66 E-value=0.21 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999999754
No 489
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.65 E-value=0.22 Score=46.47 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999999854
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.64 E-value=0.21 Score=47.74 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||.+++...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999864
No 491
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.64 E-value=0.22 Score=47.03 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..+|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999999864
No 492
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.19 Score=46.90 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRSS 44 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~~ 44 (636)
...-|+++|.+|+|||||..++....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 493
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.61 E-value=0.21 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..+|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 494
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.59 E-value=0.23 Score=46.19 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
...-|+++|.+|+|||||..+|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999999864
No 495
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.58 E-value=0.2 Score=46.68 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.1
Q ss_pred cCccEEEEEEccCCCcHHHHHHHHHH
Q 006654 17 KWKQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 17 ~~~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
...+.-|+++|.+|+|||||..++..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34556789999999999999999864
No 496
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.50 E-value=0.19 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMR 42 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak 42 (636)
++.-|+++|.+|+||||+.+++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 445689999999999999999863
No 497
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.43 E-value=0.18 Score=47.39 Aligned_cols=24 Identities=17% Similarity=0.402 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..+|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998754
No 498
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.41 E-value=0.2 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..-|+++|.+|+|||||..++...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 499
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.40 E-value=0.18 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHHH
Q 006654 20 QILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 20 p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
..++.|+|+||+|||||.+.|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 357899999999999999999854
No 500
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.35 E-value=0.2 Score=47.57 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654 19 KQILVIMVGAPGSGKSTFCEHVMRS 43 (636)
Q Consensus 19 ~p~LIvLvG~PGSGKSTlAr~Lak~ 43 (636)
+..-|+++|.+|+|||||..++...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999864
Done!