Query 006656
Match_columns 636
No_of_seqs 279 out of 845
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1193 Arginyl-tRNA-protein t 100.0 7E-128 1E-132 1010.4 25.5 504 17-633 3-511 (511)
2 PRK01305 arginyl-tRNA-protein 100.0 6.6E-69 1.4E-73 543.4 23.9 229 25-495 9-238 (240)
3 COG2935 Putative arginyl-tRNA: 100.0 1.8E-61 3.8E-66 483.4 21.3 232 24-496 9-246 (253)
4 PF04377 ATE_C: Arginine-tRNA- 100.0 9E-50 1.9E-54 369.8 14.0 127 341-490 1-128 (128)
5 PF04376 ATE_N: Arginine-tRNA- 99.9 4.1E-27 8.9E-32 202.2 5.1 76 29-105 4-80 (80)
6 PF13480 Acetyltransf_6: Acety 96.6 0.028 6.2E-07 50.5 11.5 69 396-474 73-141 (142)
7 COG5653 Protein involved in ce 87.7 4.3 9.4E-05 45.2 10.8 77 395-481 273-349 (406)
8 PF00583 Acetyltransf_1: Acety 82.4 4.9 0.00011 32.8 6.5 63 399-466 1-69 (83)
9 TIGR01575 rimI ribosomal-prote 77.6 37 0.0008 29.6 10.9 66 396-466 33-98 (131)
10 cd04301 NAT_SF N-Acyltransfera 76.9 12 0.00027 27.3 6.7 56 401-461 6-64 (65)
11 TIGR03019 pepcterm_femAB FemAB 73.7 17 0.00036 38.8 9.0 81 396-481 198-278 (330)
12 TIGR03827 GNAT_ablB putative b 68.4 47 0.001 34.4 10.7 58 399-461 163-222 (266)
13 PLN02706 glucosamine 6-phospha 63.1 96 0.0021 28.4 10.7 86 361-464 33-127 (150)
14 PF13420 Acetyltransf_4: Acety 62.5 45 0.00097 30.5 8.4 63 401-468 58-123 (155)
15 PRK03624 putative acetyltransf 57.7 1.3E+02 0.0029 26.3 10.8 79 398-481 49-129 (140)
16 PRK10140 putative acetyltransf 57.5 1.4E+02 0.0031 27.2 10.8 62 399-464 56-121 (162)
17 KOG0045 Cytosolic Ca2+-depende 56.7 20 0.00043 42.3 5.9 55 390-450 114-170 (612)
18 PRK07922 N-acetylglutamate syn 55.4 31 0.00067 33.3 6.2 57 401-462 53-110 (169)
19 PRK07757 acetyltransferase; Pr 52.6 44 0.00095 30.7 6.5 52 399-450 46-98 (152)
20 TIGR02382 wecD_rffC TDP-D-fuco 51.9 40 0.00086 32.9 6.4 63 400-467 105-168 (191)
21 PF04256 DUF434: Protein of un 50.2 9.2 0.0002 31.7 1.4 40 56-111 6-45 (58)
22 PRK10975 TDP-fucosamine acetyl 50.0 70 0.0015 31.1 7.8 62 401-467 109-171 (194)
23 PRK10146 aminoalkylphosphonic 47.7 72 0.0016 28.7 7.1 50 399-450 52-109 (144)
24 PF13508 Acetyltransf_7: Acety 46.5 85 0.0018 25.7 6.7 48 394-441 3-50 (79)
25 TIGR01686 FkbH FkbH-like domai 42.8 3.7E+02 0.008 28.7 12.5 112 329-465 184-300 (320)
26 PTZ00330 acetyltransferase; Pr 42.0 2.6E+02 0.0056 25.1 10.8 50 401-450 59-115 (147)
27 PF03485 Arg_tRNA_synt_N: Argi 40.1 17 0.00037 31.2 1.6 50 211-284 35-84 (85)
28 PF13673 Acetyltransf_10: Acet 39.1 2.5E+02 0.0054 24.1 10.2 48 397-448 47-95 (117)
29 TIGR00124 cit_ly_ligase [citra 38.6 1.5E+02 0.0032 32.5 8.8 73 363-450 11-83 (332)
30 PF11191 DUF2782: Protein of u 34.0 72 0.0016 28.9 4.7 34 393-430 48-81 (105)
31 PF09924 DUF2156: Uncharacteri 30.3 63 0.0014 33.9 4.2 64 394-463 180-246 (299)
32 PRK09491 rimI ribosomal-protei 29.9 2.1E+02 0.0046 26.0 7.3 60 398-462 44-103 (146)
33 TIGR02406 ectoine_EctA L-2,4-d 27.9 1.6E+02 0.0035 27.9 6.2 50 401-450 47-99 (157)
34 PF14542 Acetyltransf_CG: GCN5 26.2 2.4E+02 0.0053 24.1 6.4 53 398-450 3-55 (78)
35 PF07395 Mig-14: Mig-14; Inte 26.2 45 0.00097 35.5 2.2 75 390-477 172-255 (264)
36 cd02169 Citrate_lyase_ligase C 25.0 1.4E+02 0.003 32.2 5.7 55 399-462 11-65 (297)
37 PF06478 Corona_RPol_N: Corona 24.9 19 0.00042 38.9 -0.7 47 580-630 130-176 (355)
38 PHA00673 acetyltransferase dom 23.3 4E+02 0.0086 26.2 8.0 54 397-450 58-118 (154)
39 TIGR03103 trio_acet_GNAT GNAT- 22.5 9.9E+02 0.021 27.9 12.4 63 402-469 133-202 (547)
40 PRK05279 N-acetylglutamate syn 21.5 2.7E+02 0.0059 31.1 7.4 52 399-450 339-392 (441)
41 PHA01807 hypothetical protein 21.4 2.8E+02 0.006 26.9 6.5 52 399-450 58-114 (153)
No 1
>KOG1193 consensus Arginyl-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-128 Score=1010.40 Aligned_cols=504 Identities=50% Similarity=0.848 Sum_probs=413.4
Q ss_pred CCCCCceEEEecCCCCCCCCCCCCCCCCceeecccccCCCHHHHHHHHHhcccccCCcccccCcccCCCCcceeeccCCC
Q 006656 17 SNRKGETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASD 96 (636)
Q Consensus 17 ~~~~~~SiV~~~g~~~~~CgYc~~~~~~s~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~a~~ 96 (636)
|+.+++|||.++|+..+.||||++ .+.+.+||||++.||+.+||+||||||||||+|+|||+|.+||||+|||||++.+
T Consensus 3 ~~~g~~siv~~~gs~~s~cgyck~-~~~s~ShGm~a~~ltv~dYq~LiD~GWRRSG~YlYKp~~~~TCCp~YTIRl~~~~ 81 (511)
T KOG1193|consen 3 GGGGSESIVDYLGSWKSTCGYCKS-ARESISHGMWAEHLTVNDYQRLIDRGWRRSGKYLYKPDMLKTCCPLYTIRLDPLE 81 (511)
T ss_pred CCCCCHhHHHhcccchhccccccc-ccccccccceeeeeeHHHHHHHHhhccccccceeeccCCCCccCCCeeEeechhc
Confidence 456889999999999999999998 5789999999999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHhhhhh-cCcccccchhhhcccCCCCCCCCCCCCcccccccccCCccCchhHHHHHhhhhhhHHHHHH
Q 006656 97 FAPSKEQRRVSRRMQRFL-DGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQL 175 (636)
Q Consensus 97 FkpsKsQrrvlkr~~~~L-~g~~~~k~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~~~e~i~~~l~~~i~~~~~~ 175 (636)
|+|||+||||+|||++|| +|+..++.. +++ .|....+ ..++.+..+..++.+..|+.++++++..
T Consensus 82 Fk~SKeqKrv~rr~~rfL~~gk~~~~p~-e~~-~~~~~~~------------~~a~~e~n~~~~~~~~~lSd~i~~~vq~ 147 (511)
T KOG1193|consen 82 FKPSKEQKRVIRRMNRFLADGKRPVKPV-ESD-VDGTADD------------GAAKVEMNKKAEEGMKTLSDQIKKAVQS 147 (511)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCcc-ccc-ccccccc------------ccchhhhcccccccccchhhHHHhhhhh
Confidence 999999999999999999 777665553 221 1110000 1111222223455666677777776542
Q ss_pred HhhhcccccCCcCcchhhhhhhHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCChHHH
Q 006656 176 CIVRGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKII 255 (636)
Q Consensus 176 ~~~~~~~~~~~q~p~~~~k~v~~~~~kk~~~g~~~l~y~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~~~p~~i 255 (636)
++++++..++||++++|. +|+++.++. . +....++++.|
T Consensus 148 ---------------~~v~el~sakrkkl~~g~---~~~~~~~~P--------------g---------~n~~rl~~e~~ 186 (511)
T KOG1193|consen 148 ---------------ESVAELFSAKRKKLAEGT---LYTSTAPEP--------------G---------SNKNRLSKEEI 186 (511)
T ss_pred ---------------hhHHHHHhhhcccccccc---eeeeeccCC--------------C---------CCccccChHHH
Confidence 456677888899998875 677776532 0 12456788999
Q ss_pred HHHHHHHHHhhhhcccccccccCCccchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccccCCCcEEEE-
Q 006656 256 AAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRL- 334 (636)
Q Consensus 256 ~~kl~~~~~~~~~~~~~~~~~~~g~~n~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~l- 334 (636)
.+++...+.+.++...+..+.+.||+||...++.+.+.++.. +++. ..+...+|++++++
T Consensus 187 ~e~~~~~~~k~~~~~~l~~~v~kgh~~~l~~~k~~~~~r~~~---------------sl~~----~~~~~~kh~l~~r~~ 247 (511)
T KOG1193|consen 187 SEKKLSKMCKKGEQKNLDPKVAKGHINFLSSTKDASSQRTLE---------------SLID----EKSESNKHKLEVRLI 247 (511)
T ss_pred hhHhhhhhhhhccccccchhhhccCccccccchhhhcccchh---------------hhhc----ccccchhhhhheeec
Confidence 999999999999998999999999999998777766654421 2211 12334567777664
Q ss_pred --ecCCCChHHHHHHHHHHHhHcCCCCCCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEEEEEEEe
Q 006656 335 --KRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVID 412 (636)
Q Consensus 335 --~~~~~~~E~~~LY~rYq~~~H~d~~~~~s~~~y~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAVgViD 412 (636)
..+.|++|+|+||+|||+.||+|+|..+++.+|+||||+|||..+.|.| +|.|||||||||||+|||||||||||
T Consensus 248 hl~~s~F~~EsfeLYKkYQm~VH~D~p~~~~e~sfkRFLcdSPL~~e~~~g---~p~~gyGSfHqqY~lDgkLIAVgViD 324 (511)
T KOG1193|consen 248 HLKRSEFSPESFELYKKYQMKVHNDKPESITEKSFKRFLCDSPLGNEQPGG---GPLCGYGSFHQQYRLDGKLIAVGVID 324 (511)
T ss_pred cccccccChHHHHHHHHHHHhhhcCCCCCcchhhHHHHhhcCCCccCCCCC---CCcccccchhheeeeCCeEEEEEEee
Confidence 4689999999999999999999999999999999999999999888776 79999999999999999999999999
Q ss_pred cCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCCCCceee
Q 006656 413 ILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVP 492 (636)
Q Consensus 413 iLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~CpKM~YK~~f~P~elL~p~t~~W~~ 492 (636)
|||.|||||||||||||+|||||+|||||||+|+++++++||+|+|||||||||+||||||||+|+|++||||+|++|+|
T Consensus 325 ILP~cvSSvYlfyDPDYSflSLG~ySALREI~~vq~~~a~~s~L~YYYmGyYIHSCpKMrYKa~yrPSeLLcp~ty~WvP 404 (511)
T KOG1193|consen 325 ILPKCVSSVYLFYDPDYSFLSLGKYSALREIALVQRLHAKCSNLQYYYMGYYIHSCPKMRYKAKYRPSELLCPETYKWVP 404 (511)
T ss_pred cCCCccceEEEEECCchhhhccchhHHHHHHHHHHHHHhhCCCceEEEeeeEEecCcccccccccChHHhcCcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCceeeccccc-ccCCCCccccccccccccCCCCCCCCCCcccCcCCCcccCCCCCCCCCCCCCcccccc
Q 006656 493 YDIARPLLDRKPYVVLSDFAS-LQNESSPCISENVMGCQHDDIGQGDSNDVRMDYDYDDEMLDPESESDDDEPDTETSCQ 571 (636)
Q Consensus 493 l~~~~~~LD~~kY~rls~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 571 (636)
|+.|+++||+++|++|+++.- ..+..+++++|.+++- ..++. ..|
T Consensus 405 ~e~~r~lLd~~~y~~~s~~~~~s~~~~s~~~sE~l~e~----------------------~~~e~-----~~~------- 450 (511)
T KOG1193|consen 405 FEVIRPLLDKKKYTRFSEEPYLSDSQTSEGASETLKEK----------------------VIDEH-----EDM------- 450 (511)
T ss_pred hhhhhhhhccCcceecccccccCccccccCCccccchh----------------------hHHHH-----Hhh-------
Confidence 999999999999999998752 2222223333322210 00000 001
Q ss_pred ccCCCCCCCCeeEEEeCCeeeechhhhhhhccchhhhHHHHHHHHHHHHhHHHHHHHHhhcc
Q 006656 572 TVGVEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALG 633 (636)
Q Consensus 572 ~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~eYa~lVG~~~a~rml~~~~ 633 (636)
..+...+|.+|+|..+|+...|+++.++.++++++++|.+|.+|++|||++||+||||+++
T Consensus 451 -~~G~~~~i~~~li~~~~~~~~~k~~~~i~~~s~~~q~e~~i~~y~klVG~E~s~rm~y~~~ 511 (511)
T KOG1193|consen 451 -LGGCTNKIPNILISLNGQSGRYKDLPQINFPSEPPQVEAMIVDYAKLVGAELSERMVYVLS 511 (511)
T ss_pred -cCceeccchhhhhhhcccccccccchhccCcccchhHHHHHHHHHHHHhHHhhhheeEecC
Confidence 1123345899999999999999999999999999999999999999999999999999864
No 2
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=100.00 E-value=6.6e-69 Score=543.38 Aligned_cols=229 Identities=34% Similarity=0.571 Sum_probs=204.9
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecccccCCCHHHHHHHHHhcccccCCcccccCcccCCCCcceeeccCCCCccChhHH
Q 006656 25 VGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQR 104 (636)
Q Consensus 25 V~~~g~~~~~CgYc~~~~~~s~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~a~~FkpsKsQr 104 (636)
+..+-|.+++|+||++.. ....+....+.++++.|+.|+++||||||+++|||+|. +||+|++|||+|.+|+|||+||
T Consensus 9 ~~~~~t~~~~C~YL~~r~-~~~~~~~~~~~~~~~~y~~L~~~GfRRsG~~~YrP~C~-~C~aC~siRi~v~~F~psrsqr 86 (240)
T PRK01305 9 LQFYLTAPHPCSYLPGRQ-ERKLVADPSHPIAAELYDELLQAGFRRSGNIAYRPHCD-GCRACVSVRIPVAEFVPSRSQR 86 (240)
T ss_pred ceEEecCCCCCCCCCCcc-ceEEEecccccCCHHHHHHHHHcCcCcCCCeeecCCCC-CCcCceeEEeeHHHcCcCHHHH
Confidence 334558999999999543 22333458889999999999999999999999999998 7999999999999999999999
Q ss_pred HHHHHhhhhhcCcccccchhhhcccCCCCCCCCCCCCcccccccccCCccCchhHHHHHhhhhhhHHHHHHHhhhccccc
Q 006656 105 RVSRRMQRFLDGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIVRGQFLS 184 (636)
Q Consensus 105 rvlkr~~~~L~g~~~~k~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~~~e~i~~~l~~~i~~~~~~~~~~~~~~~ 184 (636)
|||||+.+
T Consensus 87 R~lkrn~d------------------------------------------------------------------------ 94 (240)
T PRK01305 87 RVLKRNAD------------------------------------------------------------------------ 94 (240)
T ss_pred HHHhhccC------------------------------------------------------------------------
Confidence 99887543
Q ss_pred CCcCcchhhhhhhHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHHHH
Q 006656 185 GIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASSLI 264 (636)
Q Consensus 185 ~~q~p~~~~k~v~~~~~kk~~~g~~~l~y~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~~~p~~i~~kl~~~~~ 264 (636)
T Consensus 95 -------------------------------------------------------------------------------- 94 (240)
T PRK01305 95 -------------------------------------------------------------------------------- 94 (240)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccccccCCccchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccccCCCcEEEEecCCCChHHH
Q 006656 265 QLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRLKRSSFDPQEF 344 (636)
Q Consensus 265 ~~~~~~~~~~~~~~g~~n~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~l~~~~~~~E~~ 344 (636)
|+|++.|+.+++|+|
T Consensus 95 -----------------------------------------------------------------l~v~~~~~~~~~E~~ 109 (240)
T PRK01305 95 -----------------------------------------------------------------LVVRVLPPEFTEEHY 109 (240)
T ss_pred -----------------------------------------------------------------eEEEEcCCCCCHHHH
Confidence 223344556789999
Q ss_pred HHHHHHHHhHcCCCC-CCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEEEEEEEecCCCcccceee
Q 006656 345 ELYRRYQIKVHNDKP-DQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYL 423 (636)
Q Consensus 345 ~LY~rYq~~~H~d~~-~~~s~~~y~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAVgViDiLp~~vSSVY~ 423 (636)
+||+|||++||.+++ .+.+.++|.+||+++|+. ++|++||+||+||||||+|+||+|||||||
T Consensus 110 ~Ly~rY~~~rH~dg~m~~~~~~~y~~Fl~~~~~~----------------t~~~ey~~~g~LiaVav~D~l~d~lSAVY~ 173 (240)
T PRK01305 110 ALYRRYLRARHADGGMDPPSRDQYAQFLEDSWVN----------------TRFIEFRGDGKLVAVAVTDVLDDGLSAVYT 173 (240)
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCC----------------cEEEEEEeCCeEEEEEEEeccCCceeeEEE
Confidence 999999999999975 478999999999999864 799999999999999999999999999999
Q ss_pred eeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCCCCceeeCCc
Q 006656 424 FWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDI 495 (636)
Q Consensus 424 fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~CpKM~YK~~f~P~elL~p~t~~W~~l~~ 495 (636)
||||||+++|||||+||+||++||+++ ++|+||||||++||||+||++|+|+|+|+++ .|.+++.
T Consensus 174 FyDPd~~~~SLG~~~iL~qI~~ak~~g-----l~y~YLGY~I~~c~kM~YK~~f~P~E~l~~~--~W~~~~~ 238 (240)
T PRK01305 174 FYDPDEEHRSLGTFAILWQIELAKRLG-----LPYVYLGYWIKGSRKMNYKARFRPLEILIDG--GWQRLEE 238 (240)
T ss_pred eeCCCccccCCHHHHHHHHHHHHHHcC-----CCeEeeeEEECCCCcccccccCCcceeecCC--cceeCCC
Confidence 999999999999999999999999995 9999999999999999999999999999997 8999865
No 3
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-61 Score=483.44 Aligned_cols=232 Identities=34% Similarity=0.580 Sum_probs=203.5
Q ss_pred EEEecCCCCCCCCCCCCC-CCCceeecccccCCCHHHHHHHHHhcccccCCcccccCcccCCCCcceeeccCCCCccChh
Q 006656 24 VVGDCGTCRSSCGYCKSS-GRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKE 102 (636)
Q Consensus 24 iV~~~g~~~~~CgYc~~~-~~~s~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~a~~FkpsKs 102 (636)
....|-|.+++|+|.+.. ++..+. -....++++.|..|+..||||||+++|||.|. +||+|+++|+.+.+|.|||+
T Consensus 9 ~~q~f~T~~~~C~Yl~~~~er~~~~--~~~~~~~~ei~~~l~~~GFRRSg~~~YRP~C~-~C~aC~s~Ri~~~ef~~srs 85 (253)
T COG2935 9 LLQFFLTAPHPCPYLPDRMERKLFT--HPVDPRNPEIYDELTQAGFRRSGNIAYRPHCE-HCRACISVRILVNEFVPSRS 85 (253)
T ss_pred cceeeecCCCCCCCCCCceeeeeee--ccccccCHHHHHHHHHhhhhhhcceecCCccc-chhhhheeecchhccCccHH
Confidence 344555899999999843 223333 37778999999999999999999999999888 69999999999999999999
Q ss_pred HHHHHHHhhhhhcCcccccchhhhcccCCCCCCCCCCCCcccccccccCCccCchhHHHHHhhhhhhHHHHHHHhhhccc
Q 006656 103 QRRVSRRMQRFLDGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIVRGQF 182 (636)
Q Consensus 103 Qrrvlkr~~~~L~g~~~~k~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~~~e~i~~~l~~~i~~~~~~~~~~~~~ 182 (636)
|||||+|+..+
T Consensus 86 ~rR~l~rn~~l--------------------------------------------------------------------- 96 (253)
T COG2935 86 QRRVLARNADL--------------------------------------------------------------------- 96 (253)
T ss_pred HHHHHHhccce---------------------------------------------------------------------
Confidence 99988765542
Q ss_pred ccCCcCcchhhhhhhHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHH
Q 006656 183 LSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASS 262 (636)
Q Consensus 183 ~~~~q~p~~~~k~v~~~~~kk~~~g~~~l~y~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~~~p~~i~~kl~~~ 262 (636)
T Consensus 97 -------------------------------------------------------------------------------- 96 (253)
T COG2935 97 -------------------------------------------------------------------------------- 96 (253)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhcccccccccCCccchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccccCCCcEEEEecCCCChH
Q 006656 263 LIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRLKRSSFDPQ 342 (636)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~n~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~l~~~~~~~E 342 (636)
.+.++|+.+++|
T Consensus 97 --------------------------------------------------------------------~~~~~~a~~s~E 108 (253)
T COG2935 97 --------------------------------------------------------------------VVRVEPAEYSEE 108 (253)
T ss_pred --------------------------------------------------------------------EEEEccCCCCHH
Confidence 223345667899
Q ss_pred HHHHHHHHHHhHcCCC-CCCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEe----eCCeEEEEEEEecCCCc
Q 006656 343 EFELYRRYQIKVHNDK-PDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYL----IDDRLVAVGVIDILPRC 417 (636)
Q Consensus 343 ~~~LY~rYq~~~H~d~-~~~~s~~~y~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~Yr----lDgkLIAVgViDiLp~~ 417 (636)
+|+||+|||..||.++ +.+.+..+|..||.++++. .|.+|+.++ ..|+||||+|+||||+|
T Consensus 109 ~y~LyrrY~~~rH~~g~m~~~s~~~f~~f~~d~~~~--------------~~~~e~r~~~~~~~~G~LvAVavtDvL~dG 174 (253)
T COG2935 109 QYELYRRYLDQRHADGGMSDMSFKDFAAFLEDTHVN--------------TQLIEYRRRKPGKGEGKLVAVAVTDVLPDG 174 (253)
T ss_pred HHHHHHHHHHHHcccCCCCCccHHHHHHHHhccccc--------------eeeEEEEecCCCCCCCcEEEEEeeecccCc
Confidence 9999999999999986 5599999999999999763 457787776 79999999999999999
Q ss_pred ccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCCCCceeeCCcc
Q 006656 418 LSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIA 496 (636)
Q Consensus 418 vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~CpKM~YK~~f~P~elL~p~t~~W~~l~~~ 496 (636)
|||||+|||||++.+|||||+||+||++|++++ |+||||||||++||||+||++|.|+|+|.|. .|.+++..
T Consensus 175 lSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~-----l~yvYLGYwI~~c~KM~YKa~f~P~e~L~~~--~W~~~~~~ 246 (253)
T COG2935 175 LSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLG-----LPYVYLGYWIKGCPKMNYKARFSPLELLVPG--GWRRFEGE 246 (253)
T ss_pred ceeEEEEeCCChhhhcchHHHHHHHHHHHHHhC-----CCeEEEEEEECCccccCcccccChHHhhcCC--ceEecccc
Confidence 999999999999999999999999999999995 9999999999999999999999999999997 69998754
No 4
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=100.00 E-value=9e-50 Score=369.77 Aligned_cols=127 Identities=52% Similarity=0.976 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHhHcCCCCC-CCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEEEEEEEecCCCccc
Q 006656 341 PQEFELYRRYQIKVHNDKPD-QVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLS 419 (636)
Q Consensus 341 ~E~~~LY~rYq~~~H~d~~~-~~s~~~y~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAVgViDiLp~~vS 419 (636)
+|+|+||+|||++||+++++ ..++++|.+||+++|+ |++|++||+|||||||||||+||+|||
T Consensus 1 eE~~~Ly~rY~~~rH~~~~~~~~~~~~y~~fl~~~~~----------------~t~~~~~~~~~kLiav~v~D~l~~glS 64 (128)
T PF04377_consen 1 EEHYELYERYQMARHPDGDMDPPSQEQYRRFLCSSPL----------------GTYHLEYRLDGKLIAVAVVDILPDGLS 64 (128)
T ss_pred ChhHHHHHHHHHHhCCCCCCCCcCHHHHHHHHhCCCC----------------CCEEEEEEeCCeEEEEEEeecccchhh
Confidence 58999999999999999876 4459999999999975 489999999999999999999999999
Q ss_pred ceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCCCCce
Q 006656 420 SKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQW 490 (636)
Q Consensus 420 SVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~CpKM~YK~~f~P~elL~p~t~~W 490 (636)
|||||||||++++|||||+||+||++||+++ ++||||||||++||||+||++|+|+|+|||+ +|
T Consensus 65 aVY~fyDPd~~~~SlG~~~iL~eI~~a~~~~-----l~y~YLGY~I~~c~kM~YK~~f~P~e~l~~~--~W 128 (128)
T PF04377_consen 65 AVYTFYDPDYSKRSLGTYSILREIELARELG-----LPYYYLGYWIHGCPKMNYKARFRPHELLDPG--RW 128 (128)
T ss_pred heeeeeCCCccccCcHHHHHHHHHHHHHHcC-----CCEEeeCeEeCCCCcccchhcCCceeeccCC--CC
Confidence 9999999999999999999999999999985 9999999999999999999999999999997 56
No 5
>PF04376 ATE_N: Arginine-tRNA-protein transferase, N terminus; InterPro: IPR007471 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the N-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=99.93 E-value=4.1e-27 Score=202.24 Aligned_cols=76 Identities=53% Similarity=0.979 Sum_probs=70.9
Q ss_pred CCCCCCCCCCC-CCCCCceeecccccCCCHHHHHHHHHhcccccCCcccccCcccCCCCcceeeccCCCCccChhHHH
Q 006656 29 GTCRSSCGYCK-SSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRR 105 (636)
Q Consensus 29 g~~~~~CgYc~-~~~~~s~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~a~~FkpsKsQrr 105 (636)
.+.+++||||+ ...+..+.+|++++.|++++|+.||++||||||+|+|||+| ++||+||||||+|.+|+|||+|||
T Consensus 4 ~~~~~~C~Y~~~~~~~~~~~~~~~~~~~~~~~y~~Ll~~G~RRsG~~~YrP~c-~~C~~c~~iRi~v~~F~~sksqrR 80 (80)
T PF04376_consen 4 LTQPSSCGYCPGRSARSSYTYGAPSESLSPEDYQQLLDRGFRRSGNYFYRPNC-QSCCACYPIRIDVSEFKPSKSQRR 80 (80)
T ss_pred CCCCCcCCCCCCCccCEEEEeccccccCCHHHHHHHHHhCCcccCCEEecCCC-CCCcCeEEEEEEHHhcCcChHhCC
Confidence 37899999998 44567788999999999999999999999999999999999 789999999999999999999996
No 6
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.63 E-value=0.028 Score=50.52 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=59.2
Q ss_pred EEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCccccc
Q 006656 396 HQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYK 474 (636)
Q Consensus 396 h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~CpKM~YK 474 (636)
-...++||++||+.++=.-.+.+-.-+.-|||+|..+++|++....-|.+|.+.+ +++|=+|- ..+.||
T Consensus 73 l~~~~~~g~~va~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g-----~~~~d~g~-----g~~~yK 141 (142)
T PF13480_consen 73 LFVLYDGGEPVAFALGFRHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERG-----LRYFDFGG-----GNEPYK 141 (142)
T ss_pred EEEEEECCEEEEEEEEEEECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCC-----CCEEEECC-----CChHhC
Confidence 3445579999999999999999999999999999999999999999999999995 88888774 345555
No 7
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=87.66 E-value=4.3 Score=45.19 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=65.9
Q ss_pred eEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCccccc
Q 006656 395 FHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYK 474 (636)
Q Consensus 395 ~h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~CpKM~YK 474 (636)
.-.-.+++|+||||...=.--+-+-+-..-||||+..+|+|-+..++-|+++-.++ +.+|=+| |=.=.||
T Consensus 273 rl~gL~~G~~lvAV~~~lr~~~t~h~~l~a~dpe~~~~SPG~~lf~d~i~~~~~~g-----~~~~Dfg-----vG~q~YK 342 (406)
T COG5653 273 RLFGLHAGGRLVAVHGLLRQGGTYHAWLGAIDPEFARASPGMLLFLDLIEWACGQG-----LARFDFG-----VGDQSYK 342 (406)
T ss_pred EEEEEeeCCEEEEEEeeeccCCEEEEEeeccCHHHhhcCchHHHHHHHHHHHhcCC-----CeEEeec-----CCChHHH
Confidence 44456689999999999888888999999999999999999999999999999996 6665554 6777899
Q ss_pred ccCCCCc
Q 006656 475 AAYHPSE 481 (636)
Q Consensus 475 ~~f~P~e 481 (636)
..|.+++
T Consensus 343 R~~~~~~ 349 (406)
T COG5653 343 RHWGDQS 349 (406)
T ss_pred HhhhhHH
Confidence 9888744
No 8
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=82.41 E-value=4.9 Score=32.76 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=49.3
Q ss_pred EeeCCeEEEEEEEecCCCc-----ccceee-eeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeec
Q 006656 399 YLIDDRLVAVGVIDILPRC-----LSSKYL-FWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIH 466 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~~-----vSSVY~-fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh 466 (636)
|+.||+|||++.+-+.+.. .--+.. +=||+|....+|+..+-.-+++|++.+ ....++.....
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g-----~~~i~~~~~~~ 69 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRG-----IKRIYLDVSPD 69 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTT-----ESEEEEEEETT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcC-----ccEEEEEEeCC
Confidence 5789999999999988875 222222 448999999999999999999999974 77777765444
No 9
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=77.58 E-value=37 Score=29.60 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=48.8
Q ss_pred EEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeec
Q 006656 396 HQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIH 466 (636)
Q Consensus 396 h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh 466 (636)
..-.+.+|+|||.+.++.-....--..++-+|+|....+|+-.+-.-++++++.+ ++..++.-..+
T Consensus 33 ~~~~~~~~~~vg~~~~~~~~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~-----~~~i~~~~~~~ 98 (131)
T TIGR01575 33 YLLARIGGKVVGYAGVQIVLDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRG-----VNEIFLEVRVS 98 (131)
T ss_pred EEEEecCCeEEEEEEEEecCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC-----CCeEEEEEecc
Confidence 3444568999999998875554433455679999999999998888888888774 67777664333
No 10
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=76.86 E-value=12 Score=27.29 Aligned_cols=56 Identities=14% Similarity=-0.013 Sum_probs=43.1
Q ss_pred eCCeEEEEEEEecCCC--ccccee-eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEe
Q 006656 401 IDDRLVAVGVIDILPR--CLSSKY-LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYL 461 (636)
Q Consensus 401 lDgkLIAVgViDiLp~--~vSSVY-~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYl 461 (636)
.+|++||+..+...+. ....+. ++-+|+|....+|+-.+-.-++++++. ++.++++
T Consensus 6 ~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~v~~ 64 (65)
T cd04301 6 DDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARER-----GAKRLRL 64 (65)
T ss_pred cCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHc-----CCcEEEe
Confidence 5789999988877662 333344 788999999999999998889999885 3666654
No 11
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=73.71 E-value=17 Score=38.78 Aligned_cols=81 Identities=9% Similarity=-0.029 Sum_probs=59.8
Q ss_pred EEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccc
Q 006656 396 HQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKA 475 (636)
Q Consensus 396 h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~CpKM~YK~ 475 (636)
...+..||++||.+++=.-.+.+..-|.-.++++..++.+.+..-.-|++|++.| +++|-+|=--.+--=.+||.
T Consensus 198 ~~a~~~~g~~va~~l~~~~~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G-----~~~fDfG~s~~~~G~~~FK~ 272 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFRDEVLPYYAGGLREARDVAANDLMYWELMRRACERG-----LRVFDFGRSKRGTGPFKFKK 272 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeCCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCC-----CcEEEcCCCCCCCccHHHHh
Confidence 3334369999998886555566665566778999999999999999999999995 99999994211112357999
Q ss_pred cCCCCc
Q 006656 476 AYHPSE 481 (636)
Q Consensus 476 ~f~P~e 481 (636)
.|....
T Consensus 273 ~~G~~~ 278 (330)
T TIGR03019 273 NWGFEP 278 (330)
T ss_pred cCCCee
Confidence 877553
No 12
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=68.36 E-value=47 Score=34.43 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=41.9
Q ss_pred EeeCCeEEEEEEEecCCCcccc-ee-eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEe
Q 006656 399 YLIDDRLVAVGVIDILPRCLSS-KY-LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYL 461 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~~vSS-VY-~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYl 461 (636)
...||+|||++.+.+-+..-.+ +. ++=+|+|....+|+..+-.-++++++.+ +...|+
T Consensus 163 ~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g-----~~~l~~ 222 (266)
T TIGR03827 163 VEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKG-----IRTAYT 222 (266)
T ss_pred EEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC-----CcEEEe
Confidence 3469999999887654432222 33 3449999999999998888888999875 666554
No 13
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=63.13 E-value=96 Score=28.38 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=55.0
Q ss_pred CCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEee--CCeEEEEEEEecCC----Cccccee---eeeCCCcCc
Q 006656 361 QVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLI--DDRLVAVGVIDILP----RCLSSKY---LFWDPDYAF 431 (636)
Q Consensus 361 ~~s~~~y~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~Yrl--DgkLIAVgViDiLp----~~vSSVY---~fYDPdy~~ 431 (636)
+.+.+.|.+++....-. +...+...... +|++||++.+-+.+ .+....| ++-+|+|..
T Consensus 33 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg 99 (150)
T PLN02706 33 DVTEEEFEARFQELASL-------------GDDHLICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARG 99 (150)
T ss_pred CCCHHHHHHHHHHHHhC-------------CCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcC
Confidence 56788888886543110 00012222223 68999998774322 2211122 578999999
Q ss_pred CCchhHHHHHHHHHHHHhcccCCCCceeEeeEe
Q 006656 432 LSLGKYSALQEISWVKENQTHCPTLQYYYLGYY 464 (636)
Q Consensus 432 ~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYy 464 (636)
..+|+..+-.=+++|++++ +.-.++.-.
T Consensus 100 ~GiG~~ll~~~~~~a~~~g-----~~~i~l~~~ 127 (150)
T PLN02706 100 KGLGKKIIEALTEHARSAG-----CYKVILDCS 127 (150)
T ss_pred CCHHHHHHHHHHHHHHHcC-----CCEEEEEec
Confidence 9999999999999999874 777777654
No 14
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=62.50 E-value=45 Score=30.53 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=47.3
Q ss_pred eCCeEEEEEEEecCCCccccee--eeeCCCcCcCCchhHHHHHHHHHH-HHhcccCCCCceeEeeEeecCC
Q 006656 401 IDDRLVAVGVIDILPRCLSSKY--LFWDPDYAFLSLGKYSALQEISWV-KENQTHCPTLQYYYLGYYIHSC 468 (636)
Q Consensus 401 lDgkLIAVgViDiLp~~vSSVY--~fYDPdy~~~SLGt~saL~EI~~a-r~l~~~~P~l~yyYlGYyIh~C 468 (636)
.+|++||++.+..+...-..++ ++..|+|....+|+-.+..-+++| ++++ ++..++.-+-.+=
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~~-----~~~i~~~v~~~N~ 123 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSIYVSPDYRGKGIGRKLLDELIEYAFKELG-----IHKIYLEVFSSNE 123 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHTT------CEEEEEEETT-H
T ss_pred cCCcEEEEEEEEeeeccCCEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhccC-----eEEEEEEEecCCH
Confidence 5999999998886554333333 356699999999999999999999 7774 8988887755543
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=57.66 E-value=1.3e+02 Score=26.29 Aligned_cols=79 Identities=10% Similarity=-0.032 Sum_probs=47.5
Q ss_pred EEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecC--CCcccccc
Q 006656 398 QYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS--CRKMRYKA 475 (636)
Q Consensus 398 ~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~--CpKM~YK~ 475 (636)
--..||++||...+..-.+.....+++=+|+|....+|+-..-.-++++++++ ++-.++.-.-.+ +.++--|.
T Consensus 49 v~~~~~~~vG~~~~~~~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~-----~~~~~~~~~~~N~~~~~~y~k~ 123 (140)
T PRK03624 49 VAEVGGEVVGTVMGGYDGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARG-----CPKINLQVREDNDAVLGFYEAL 123 (140)
T ss_pred EEEcCCcEEEEEEeeccCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEecCcHHHHHHHHHc
Confidence 34568999999876543332222233459999999999955555556677764 666666543221 22344455
Q ss_pred cCCCCc
Q 006656 476 AYHPSE 481 (636)
Q Consensus 476 ~f~P~e 481 (636)
-|.+..
T Consensus 124 GF~~~~ 129 (140)
T PRK03624 124 GYEEQD 129 (140)
T ss_pred CCcccc
Confidence 555443
No 16
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=57.54 E-value=1.4e+02 Score=27.18 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=40.6
Q ss_pred EeeCCeEEEEEEEecCCC----cccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEe
Q 006656 399 YLIDDRLVAVGVIDILPR----CLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYY 464 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~----~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYy 464 (636)
...+|++||++-+...+. .+--+-++=+|+|....+|+-.+=.-+++|++.. ++.-..+..+
T Consensus 56 ~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~----~~~~i~l~v~ 121 (162)
T PRK10140 56 ACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWL----RVDRIELTVF 121 (162)
T ss_pred EEECCEEEEEEEEecccccccceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhhC----CccEEEEEEE
Confidence 346899999987765431 1111225669999999999987766778887731 3555555443
No 17
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.67 E-value=20 Score=42.34 Aligned_cols=55 Identities=24% Similarity=0.173 Sum_probs=43.0
Q ss_pred CCCcceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCch--hHHHHHHHHHHHHhc
Q 006656 390 CGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLG--KYSALQEISWVKENQ 450 (636)
Q Consensus 390 ~~~Gs~h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLG--t~saL~EI~~ar~l~ 450 (636)
...|.||.++|++|+.+.|-|-|.||.-.-..-|-. -+=. -.+||-|=+||+-+|
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~~~~~~~------s~~~~efW~aLlEKAyaKl~G 170 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNGGLLFSH------SSGKNEFWAALLEKAYAKLLG 170 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcCCEEEEe------ecCCceeHHHHHHHHHHHHhC
Confidence 567899999999999999999999996554443222 2222 478999999999997
No 18
>PRK07922 N-acetylglutamate synthase; Validated
Probab=55.39 E-value=31 Score=33.30 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=44.5
Q ss_pred eCCeEEEEEEEecCCCcccce-eeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEee
Q 006656 401 IDDRLVAVGVIDILPRCLSSK-YLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLG 462 (636)
Q Consensus 401 lDgkLIAVgViDiLp~~vSSV-Y~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlG 462 (636)
.+|++||++.+.+.++....+ .++=||+|....+|+..+=.-+++|++.+ ++..|++
T Consensus 53 ~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g-----~~~l~~~ 110 (169)
T PRK07922 53 LDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELG-----LSRVFVL 110 (169)
T ss_pred cCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcC-----CCEEEEE
Confidence 689999999888766544334 35569999999999998888888999885 6766654
No 19
>PRK07757 acetyltransferase; Provisional
Probab=52.64 E-value=44 Score=30.72 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=39.8
Q ss_pred EeeCCeEEEEEEEecCCCcccce-eeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 399 YLIDDRLVAVGVIDILPRCLSSK-YLFWDPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~~vSSV-Y~fYDPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
...+|++||.+.+.+......-+ .++-+|+|....+|+..+-.-+++|++.+
T Consensus 46 ~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g 98 (152)
T PRK07757 46 AEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELG 98 (152)
T ss_pred EEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 34789999998887665544334 45669999999999988877788888764
No 20
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=51.86 E-value=40 Score=32.88 Aligned_cols=63 Identities=10% Similarity=-0.031 Sum_probs=48.2
Q ss_pred eeCCeEEEEEEEecCCCccccee-eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecC
Q 006656 400 LIDDRLVAVGVIDILPRCLSSKY-LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS 467 (636)
Q Consensus 400 rlDgkLIAVgViDiLp~~vSSVY-~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~ 467 (636)
..+|++||...+...+..-.-|. ++.+|+|....+|+-.+-.=+++|++++ +.-.++.-+..+
T Consensus 105 ~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g-----~~~I~l~v~~~N 168 (191)
T TIGR02382 105 DASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARG-----LTRLRVATQMGN 168 (191)
T ss_pred ccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC-----CCEEEEEeCCCC
Confidence 35899999988876654322344 4459999999999999999999999884 777777766554
No 21
>PF04256 DUF434: Protein of unknown function (DUF434); InterPro: IPR007368 This is a family of uncharacterised proteins.
Probab=50.22 E-value=9.2 Score=31.65 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.0
Q ss_pred CHHHHHHHHHhcccccCCcccccCcccCCCCcceeeccCCCCccChhHHHHHHHhh
Q 006656 56 TVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRRVSRRMQ 111 (636)
Q Consensus 56 t~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~a~~FkpsKsQrrvlkr~~ 111 (636)
...|+.-|++|||++-+ +|++-.+.|+.++.||.+|.|..
T Consensus 6 A~~Dl~yLLnRGY~~k~----------------al~fVgnhy~Ls~rqR~~L~R~v 45 (58)
T PF04256_consen 6 AAEDLRYLLNRGYPKKS----------------ALEFVGNHYRLSKRQRLALARCV 45 (58)
T ss_pred HHHHHHHHHhCCCCchh----------------HHHHHHHhccCCHHHHHHHHhhc
Confidence 35789999999998643 67788899999999999998864
No 22
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=49.98 E-value=70 Score=31.11 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=46.6
Q ss_pred eCCeEEEEEEEecCCCcccceeee-eCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecC
Q 006656 401 IDDRLVAVGVIDILPRCLSSKYLF-WDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS 467 (636)
Q Consensus 401 lDgkLIAVgViDiLp~~vSSVY~f-YDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~ 467 (636)
.+|++||+..+........-+.++ -+|+|....+|+-.+-.=+++|++.+ +...+++-+-++
T Consensus 109 ~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g-----~~~i~l~v~~~N 171 (194)
T PRK10975 109 ASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARG-----LTRLRVATQMGN 171 (194)
T ss_pred CCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcC-----CCEEEEEeCCCc
Confidence 478999998887655443334444 49999999999999989999998874 777777665443
No 23
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=47.68 E-value=72 Score=28.69 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=38.5
Q ss_pred EeeCCeEEEEEEEecCCC--------cccceeeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 399 YLIDDRLVAVGVIDILPR--------CLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~--------~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
...||++||...+...+. -|. .++=+|+|....+|+..+-.=+++|++.+
T Consensus 52 ~~~~~~ivG~~~~~~~~~~~~~~~~~~i~--~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~ 109 (144)
T PRK10146 52 ALLDGEVVGMIGLHLQFHLHHVNWIGEIQ--ELVVMPQARGLNVGSKLLAWAEEEARQAG 109 (144)
T ss_pred EEECCEEEEEEEEEecccccccchhheeh--eeEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 456899998887765432 133 34569999999999999999999999875
No 24
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=46.52 E-value=85 Score=25.73 Aligned_cols=48 Identities=17% Similarity=-0.029 Sum_probs=38.6
Q ss_pred ceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHH
Q 006656 394 SFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQ 441 (636)
Q Consensus 394 s~h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~ 441 (636)
.++.-.+.||++||++.+.-..+.+-=.+++=+|+|....+|+..+-.
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~ll~~ 50 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNEDFAYIGYLAVDPEYRGKGIGSKLLNY 50 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTEEEEEEEEE-GGGTTSSHHHHHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEcCCEEEEEEEEECHHHcCCCHHHHHHHH
Confidence 467778889999999999888887766777889999999999754433
No 25
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=42.79 E-value=3.7e+02 Score=28.73 Aligned_cols=112 Identities=10% Similarity=-0.038 Sum_probs=72.2
Q ss_pred CcEEEEecCCCC--hHHHHHHHHHHHhHcCCCCCCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEe---eCC
Q 006656 329 KLQIRLKRSSFD--PQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYL---IDD 403 (636)
Q Consensus 329 ~l~v~l~~~~~~--~E~~~LY~rYq~~~H~d~~~~~s~~~y~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~Yr---lDg 403 (636)
+++++|.++... +.-++|..+-- ..+.....++++++..++.+. . .|..... -|+
T Consensus 184 ~m~~~Ir~a~~~Dl~ri~~L~~~tn--qfn~~~~~~s~~~i~~~l~~~-~-----------------~~~~~~~d~~gd~ 243 (320)
T TIGR01686 184 ELSLNISKNDEQNVQRVEELLGRTN--QFNATYTRLNQEDVAQHMQKE-E-----------------IVTVSMSDRFGDS 243 (320)
T ss_pred CCEEEEEECChhhhHHHHHHHHhHH--hhhccCccCCHHHHHHHhcCC-C-----------------EEEEEEEecCCCC
Confidence 455667666532 33456665421 122222367888898887432 1 1222221 267
Q ss_pred eEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEee
Q 006656 404 RLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYI 465 (636)
Q Consensus 404 kLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyI 465 (636)
.+||++++...++.+-=.-++-+|++....+|+.-.-.=+++|++.+ ....++.|..
T Consensus 244 givG~~~~~~~~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G-----~~~i~l~v~~ 300 (320)
T TIGR01686 244 GIIGIFVFEKKEGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLG-----NHNARLYYRR 300 (320)
T ss_pred ceEEEEEEEecCCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcC-----CCeEEEEEee
Confidence 89999998776655433446779999999999988777788898885 7888888764
No 26
>PTZ00330 acetyltransferase; Provisional
Probab=41.97 E-value=2.6e+02 Score=25.11 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=35.1
Q ss_pred eCCeEEEEEEEecCCCccc---ce----eeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 401 IDDRLVAVGVIDILPRCLS---SK----YLFWDPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 401 lDgkLIAVgViDiLp~~vS---SV----Y~fYDPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
.+|++||.+-+-+-+.... .+ .+|=+|+|....+|+..+=.-+++|+..+
T Consensus 59 ~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~ 115 (147)
T PTZ00330 59 PTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSG 115 (147)
T ss_pred CCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 5799999886543332111 01 14569999999999988888888888764
No 27
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=40.06 E-value=17 Score=31.25 Aligned_cols=50 Identities=34% Similarity=0.521 Sum_probs=30.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHHHHhhhhcccccccccCCccchh
Q 006656 211 LLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFY 284 (636)
Q Consensus 211 l~y~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~~~p~~i~~kl~~~~~~~~~~~~~~~~~~~g~~n~~ 284 (636)
..|.+|.+|.+++..+ .+|..|+++|.+.+........+.+ +..|++||+
T Consensus 35 GD~~~n~a~~lak~~k-----------------------~~P~~iA~~i~~~l~~~~~i~~vev-~gpGFiN~~ 84 (85)
T PF03485_consen 35 GDYQTNIAFRLAKKLK-----------------------KNPREIAEEIAEKLEKSPIIEKVEV-AGPGFINFF 84 (85)
T ss_dssp -SEEEEHHHHHHHHTT-----------------------S-HHHHHHHHHHCHCTTTTEEEEEE-ETTTEEEEE
T ss_pred eeeeccchHHHHHHcC-----------------------CCHHHHHHHHHHhcCCCCCEEEEEE-cCCcEEEEe
Confidence 4688999988765443 2677788888877654433332222 234888875
No 28
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=39.12 E-value=2.5e+02 Score=24.07 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=32.8
Q ss_pred EEEeeCCeEEEEEEEecCCCcccceee-eeCCCcCcCCchhHHHHHHHHHHHH
Q 006656 397 QQYLIDDRLVAVGVIDILPRCLSSKYL-FWDPDYAFLSLGKYSALQEISWVKE 448 (636)
Q Consensus 397 ~~YrlDgkLIAVgViDiLp~~vSSVY~-fYDPdy~~~SLGt~saL~EI~~ar~ 448 (636)
.-...+|++||++.+. +++- |.. |=+|+|....+|+--.-.-++++++
T Consensus 47 ~v~~~~~~ivG~~~~~--~~~~--i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~ 95 (117)
T PF13673_consen 47 FVAEEGGEIVGFAWLE--PDGE--ISHLYVLPEYRGRGIGRALLDAAEKEAKD 95 (117)
T ss_dssp EEEEETTEEEEEEEEE--TCEE--EEEEEE-GGGTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCEEEEEEEEc--CCCe--EEEEEEChhhcCCcHHHHHHHHHHHHHHc
Confidence 3445799999999997 5543 444 4489998888888666555555544
No 29
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=38.60 E-value=1.5e+02 Score=32.49 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=51.7
Q ss_pred CHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHH
Q 006656 363 TETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQE 442 (636)
Q Consensus 363 s~~~y~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~E 442 (636)
...+...||...-|....+. .+..-.+.||+|||+|-+. .+-|- +++=||+|....||+--+-.-
T Consensus 11 ~~~~v~~fL~~~~l~~d~~~-----------d~~vv~~~~~~lVg~g~l~--g~~ik--~vaV~~~~rG~Glg~~L~~~L 75 (332)
T TIGR00124 11 KACGIKNFLHQNELSLDAPL-----------EIFIAVYEDEEIIGCGGIA--GNVIK--CVAIDESLRGEGLALQLMTEL 75 (332)
T ss_pred HHHHHHHHHHhcCCcccCCC-----------CEEEEEEECCEEEEEEEEe--cCEEE--EEEEcHHHcCCCHHHHHHHHH
Confidence 34577788877655321110 2444556899999999873 33333 677899999999999888888
Q ss_pred HHHHHHhc
Q 006656 443 ISWVKENQ 450 (636)
Q Consensus 443 I~~ar~l~ 450 (636)
++++++.+
T Consensus 76 ~~~a~~~G 83 (332)
T TIGR00124 76 ENLAYELG 83 (332)
T ss_pred HHHHHHcC
Confidence 88999885
No 30
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=34.00 E-value=72 Score=28.92 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=27.4
Q ss_pred cceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcC
Q 006656 393 GSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYA 430 (636)
Q Consensus 393 Gs~h~~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~ 430 (636)
|.+..+||++|+|-+|=|.--.. .=|+++|+|=.
T Consensus 48 ~~~ieEyRv~G~l~~IkV~P~~G----~~Yyl~d~dg~ 81 (105)
T PF11191_consen 48 GSTIEEYRVNGQLYMIKVQPKAG----PPYYLVDPDGD 81 (105)
T ss_pred CcEEEEEEECCeEeeEEEEeCCC----CCEEEECCCCC
Confidence 47889999999999998875433 55999999863
No 31
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=30.25 E-value=63 Score=33.94 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=38.3
Q ss_pred ceEEEEee-CCeEEEEEEEecCC--CcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeE
Q 006656 394 SFHQQYLI-DDRLVAVGVIDILP--RCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGY 463 (636)
Q Consensus 394 s~h~~Yrl-DgkLIAVgViDiLp--~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGY 463 (636)
....--+. ||+++|+.+..-++ ++++--....||| ---|++-.|-.-. ++.+. ..+.+|+-||+
T Consensus 180 ~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~---a~~G~~e~l~~~~-~~~~~--~~g~~~lnLg~ 246 (299)
T PF09924_consen 180 LRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD---APKGIYEFLNVEF-AEHLK--AEGVEYLNLGF 246 (299)
T ss_dssp -EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT----STTHHHHHHHHH-HHHS----TT--EEE---
T ss_pred ceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC---CCCcHHHHHHHHH-HHhhh--hCCceEEEccc
Confidence 34445567 99999999999877 7777777788999 2348887775332 22222 12588888554
No 32
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=29.93 E-value=2.1e+02 Score=25.97 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=41.9
Q ss_pred EEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEee
Q 006656 398 QYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLG 462 (636)
Q Consensus 398 ~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlG 462 (636)
.+..||++||.+.+...++...-..+.=+|+|....+|+..+=.-++.+++.+ +.-+++.
T Consensus 44 ~~~~~~~~vG~~~~~~~~~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~-----~~~~~~~ 103 (146)
T PRK09491 44 KLTVNGQMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRG-----VATLWLE 103 (146)
T ss_pred EEEECCeEEEEEEEEeecCceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCC-----CcEEEEE
Confidence 34478999999999876554322234458999999999988777777777653 5555554
No 33
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=27.87 E-value=1.6e+02 Score=27.85 Aligned_cols=50 Identities=12% Similarity=-0.026 Sum_probs=37.1
Q ss_pred eCCeEEEEEEEecCCCcccc--eeeee-CCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 401 IDDRLVAVGVIDILPRCLSS--KYLFW-DPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 401 lDgkLIAVgViDiLp~~vSS--VY~fY-DPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
.+|++||++..-..+..... ++.+| +|+|....+|+..+-.-+++|+..+
T Consensus 47 ~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~ 99 (157)
T TIGR02406 47 EGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACER 99 (157)
T ss_pred CCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCC
Confidence 46899998766555543332 33443 9999999999999999999988764
No 34
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=26.21 E-value=2.4e+02 Score=24.06 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=44.7
Q ss_pred EEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 398 QYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 398 ~YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
..++||+.+|.--...-++.+.-..++=+|++.-..+|.--+-.=+++|++.+
T Consensus 3 ~~~~~g~~~a~l~Y~~~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~ 55 (78)
T PF14542_consen 3 ELKDDGEEIAELTYREDGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENG 55 (78)
T ss_dssp EEESSTTEEEEEEEEESSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEEEeCCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Confidence 45577888888888777777888899999999999999999999999999986
No 35
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=26.21 E-value=45 Score=35.51 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=47.0
Q ss_pred CCCcceEEEEeeCCeEEEEEEEecCCCcccceee-----eeCCCcCcCCchhHHH----HHHHHHHHHhcccCCCCceeE
Q 006656 390 CGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYL-----FWDPDYAFLSLGKYSA----LQEISWVKENQTHCPTLQYYY 460 (636)
Q Consensus 390 ~~~Gs~h~~YrlDgkLIAVgViDiLp~~vSSVY~-----fYDPdy~~~SLGt~sa----L~EI~~ar~l~~~~P~l~yyY 460 (636)
+-||+. .+++|+-||+-+|= --++-.-||+ =|||++..+|+|++-+ -.-.++|+++++ .|+ |=
T Consensus 172 ~~fG~v---L~l~~~P~Aiqlv~-k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k---~lr-fS 243 (264)
T PF07395_consen 172 MIFGSV---LFLNGQPCAIQLVY-KVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGK---PLR-FS 243 (264)
T ss_pred hheeeE---EEECCcceEEEEEE-EecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCC---ceE-EE
Confidence 455663 35899999987662 2333344444 3699999999999754 455567777763 233 23
Q ss_pred eeEeecCCCcccccccC
Q 006656 461 LGYYIHSCRKMRYKAAY 477 (636)
Q Consensus 461 lGYyIh~CpKM~YK~~f 477 (636)
.| =|.-.||.++
T Consensus 244 fG-----r~~~~YK~rW 255 (264)
T PF07395_consen 244 FG-----RPDWDYKDRW 255 (264)
T ss_pred cC-----CCChHHHhhc
Confidence 34 3455777643
No 36
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=24.96 E-value=1.4e+02 Score=32.15 Aligned_cols=55 Identities=20% Similarity=0.127 Sum_probs=41.8
Q ss_pred EeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEee
Q 006656 399 YLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLG 462 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~~vSSVY~fYDPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlG 462 (636)
|..||++||+|-+. ...+. +++=||+|....+|+--+=.-+++|++.+ +...|+-
T Consensus 11 ~~~~~~iVG~~~l~--~~~I~--~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g-----~~~i~L~ 65 (297)
T cd02169 11 FDDAGELIATGSIA--GNVLK--CVAVCPKYQGEGLALKIVSELINKAYEEG-----IFHLFLF 65 (297)
T ss_pred EEECCEEEEEEEec--cCEEE--EEEECHHHcCCCHHHHHHHHHHHHHHHCC-----CCEEEEE
Confidence 44679999998774 34444 35679999999999988888888999985 6665553
No 37
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=24.87 E-value=19 Score=38.89 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=39.2
Q ss_pred CCeeEEEeCCeeeechhhhhhhccchhhhHHHHHHHHHHHHhHHHHHHHHh
Q 006656 580 ISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVY 630 (636)
Q Consensus 580 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~eYa~lVG~~~a~rml~ 630 (636)
|.+|||++.+.--.|=+-..|++|+|+ +...+.|++| |+.++..||=
T Consensus 130 lkeILv~~g~c~~~yFd~k~WyDpVEN---~di~~vy~kL-G~iv~~a~L~ 176 (355)
T PF06478_consen 130 LKEILVTYGCCDESYFDNKDWYDPVEN---PDIHRVYAKL-GPIVNRAMLK 176 (355)
T ss_pred HHHHHHHhcCCcHHHcCcccCcCCccC---hHHHHHHHHH-HHHHHHHHHH
Confidence 678899998887777777889999998 8888999885 8888887763
No 38
>PHA00673 acetyltransferase domain containing protein
Probab=23.29 E-value=4e+02 Score=26.19 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=43.0
Q ss_pred EEEeeCCeEEEEEEEecCCCc-ccc-e-----eeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 397 QQYLIDDRLVAVGVIDILPRC-LSS-K-----YLFWDPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 397 ~~YrlDgkLIAVgViDiLp~~-vSS-V-----Y~fYDPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
.-..++|++||...+++.|.. ... - .++=+|++.-..+|+--.-+=+++||+.|
T Consensus 58 lVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~G 118 (154)
T PHA00673 58 LGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLG 118 (154)
T ss_pred EEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCC
Confidence 344569999999999999953 221 1 23568999999999999989999999997
No 39
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=22.51 E-value=9.9e+02 Score=27.87 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCeEEEEEE-Eec---CCC--cccceeeee-CCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCC
Q 006656 402 DDRLVAVGV-IDI---LPR--CLSSKYLFW-DPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCR 469 (636)
Q Consensus 402 DgkLIAVgV-iDi---Lp~--~vSSVY~fY-DPdy~~~SLGt~saL~EI~~ar~l~~~~P~l~yyYlGYyIh~Cp 469 (636)
+|++||++. ++. +++ .-+.++.+| ||+|....+|+.-+-.-++++++.+ +.+.+|.-.-++-.
T Consensus 133 ~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G-----~~~i~L~V~~~N~~ 202 (547)
T TIGR03103 133 SGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRG-----CAYMDLSVMHDNEQ 202 (547)
T ss_pred CCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEcCCCHH
Confidence 699999874 232 122 123455444 9999999999988888888999885 88888866544433
No 40
>PRK05279 N-acetylglutamate synthase; Validated
Probab=21.45 E-value=2.7e+02 Score=31.11 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=39.3
Q ss_pred EeeCCeEEEEEEEecCCCc-cccee-eeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 399 YLIDDRLVAVGVIDILPRC-LSSKY-LFWDPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~~-vSSVY-~fYDPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
...||++||.+.+...+.. ..-+. ++=+|+|...-+|+.-+-.-+++|++.+
T Consensus 339 a~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g 392 (441)
T PRK05279 339 IERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLG 392 (441)
T ss_pred EEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 3468999999887766542 22344 3449999999999998888888999885
No 41
>PHA01807 hypothetical protein
Probab=21.41 E-value=2.8e+02 Score=26.86 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=38.3
Q ss_pred EeeCCeEEEEEEEecCCCc----cccee-eeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006656 399 YLIDDRLVAVGVIDILPRC----LSSKY-LFWDPDYAFLSLGKYSALQEISWVKENQ 450 (636)
Q Consensus 399 YrlDgkLIAVgViDiLp~~----vSSVY-~fYDPdy~~~SLGt~saL~EI~~ar~l~ 450 (636)
...||+|||++.+-..+.. +-++. +|=+|+|.-..+|+.-+-.=|++|++.+
T Consensus 58 a~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G 114 (153)
T PHA01807 58 VFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGN 114 (153)
T ss_pred EEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 3469999998877433321 11221 3679999999999999999999999985
Done!