BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006657
(636 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 175/556 (31%), Positives = 230/556 (41%), Gaps = 116/556 (20%)
Query: 124 SNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTH-NPI-- 180
S+NNF IP FLG +L+H+D+S +L+G + L+ L++S + PI
Sbjct: 205 SSNNFSTG-IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 181 ----SFSFLYL-ENFXXXXXXXXXXXX--XXTGVDLSTASDWFLV--------------- 218
S +L L EN TG+DLS + V
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 219 -----TNMLP--------SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF----- 260
+ LP L+VL LS LPE +SL TLDLS N F
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 261 -------DNTL-------------VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLE 300
NTL +P L S LV L L FN G IP L +L+ L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVV------FDIGENGFSGN 354
L L N IP L LE L L N L G I S L + N +G
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 355 IPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414
IP WIG + +N F G IPAEL SL LDL+ N F+GT+P AM
Sbjct: 503 IPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAM 555
Query: 415 MNQENSMETD----KEY-----DTFTIEL----SILVVMKGRELAYNTMLKLVRC----- 456
Q + + K Y D E ++L R N + C
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 457 ------------------MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA 498
+D+S N LSG IP+E+ ++ L LNL HN ++G IP+ VG
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 499 MRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN- 557
+R L +D S N L GRIPQ++S+LT L+ ++LS+NNL+G IP Q + F + F N
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 735
Query: 558 NLCGAPLPKNCTDQNV 573
LCG PLP+ C N
Sbjct: 736 GLCGYPLPR-CDPSNA 750
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 143/520 (27%), Positives = 225/520 (43%), Gaps = 58/520 (11%)
Query: 35 ERKALLRFKQDLKDPANRLASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFW 93
E L+ FK L D N L WS + N CT+ GV C D ++L +P
Sbjct: 10 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDL--------SSKPLN 60
Query: 94 LEDYDDETSKLIGKINPSXXXXXXXXXXXXSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
+ ++ S SN++ N + F SL +DLSR L
Sbjct: 61 VG---------FSAVSSSLLSLTGLESLFLSNSHI-NGSVSGF-KCSASLTSLDLSRNSL 109
Query: 154 TGMIPH--QLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXXXXXXXXTGVDLST 211
+G + LG+ L++L++S +T F + + +
Sbjct: 110 SGPVTTLTSLGSCSGLKFLNVSSNT-----LDFPGKVSGGLKLNSLEVLDLSANSISGAN 164
Query: 212 ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271
W L ++ L+ L +S + ++ ++ +L LD+S N F +T +P +L
Sbjct: 165 VVGWVL-SDGCGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNF-STGIP-FLGD 218
Query: 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
S L LD+ N G + T L+ L++ SN F+ IP K L+YLSL EN
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAEN 276
Query: 332 RLQGMISS-------VLVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAE- 383
+ G I L D+ N F G +P + G SN F G++P +
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS-SNNFSGELPMDT 335
Query: 384 LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGR 443
L ++ L +LDLS N FSG LP + NL+A + + D + F+ + + +
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASL-----LTLDLSSNNFSGPILPNLCQNPK 390
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503
NT+ +L L N +G IP ++N L SL+LS N+L+G IP ++G++ L
Sbjct: 391 ----NTLQELY----LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
+ N+L G IPQ + + L L L N+LTG+IP G
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 182/458 (39%), Gaps = 78/458 (17%)
Query: 140 MGSLRHIDLSRAELTGMIPHQLGNL-FNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXX 198
M L+ +DLS E +G +P L NL +L LDLS + +FS L N
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-----NFSGPILPN--------- 384
Query: 199 XXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 258
L N +LQ L L +P ++N S L +L LS+N
Sbjct: 385 ------------------LCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFN 425
Query: 259 EFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH 318
T +PS L LS L L L N G IP L + +LE L L N+ IP+ L
Sbjct: 426 YLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 319 KFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDG 378
T L ++SL NRL +G IP WIG + +N F G
Sbjct: 485 NCTNLNWISLSNNRL------------------TGEIPKWIG-RLENLAILKLSNNSFSG 525
Query: 379 QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV 438
IPAEL SL LDL+ N F+GT+P AM Q + +
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFKQSGKIAAN-------------- 565
Query: 439 VMKGRELAYNTMLKLVRCMDLSGN--NLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV 496
+ G+ Y + + +GN G E++ L N++ G
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 497 GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT-QLQGFNASCFA 555
S+ +D S N+LSG IP+ I S+ +L LNL N+++G IP L+G N +
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 556 GNNLCGA-PLPKNCTDQNVPIPAENENGSEDEDEMGYW 592
N L G P + I N N S EMG +
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 185/411 (45%), Gaps = 43/411 (10%)
Query: 141 GSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXXXX 200
G L+H+ +S +++G + + NL++LD+S N S +L +
Sbjct: 175 GELKHLAISGNKISGDV--DVSRCVNLEFLDVS---SNNFSTGIPFLGD------CSALQ 223
Query: 201 XXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 260
+G LS D+ + L++L +S+ +P LP+ SL L L+ N+F
Sbjct: 224 HLDISGNKLS--GDFSRAISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKF 278
Query: 261 DNTLVPSWLFGL-SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT-WLH 318
+P +L G L LDL N F G +P + + LE L L SNNF +P L
Sbjct: 279 TGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 319 KFTRLEYLSLRENRLQGMI-------SSVLVVFDIGENGFSGNI-PAWIGEKXXXXXXXX 370
K L+ L L N G + S+ L+ D+ N FSG I P
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 371 XXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430
+N F G+IP L + L L LS N SGT+P + +L+ + +
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-------------L 444
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
+ L++L +EL Y +K + + L N+L+G+IP ++N L ++LS+N L G
Sbjct: 445 KLWLNMLEGEIPQELMY---VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 491 KIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
+IP+ +G + +L + S N SG IP + L L+L+ N G IP
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 175/556 (31%), Positives = 230/556 (41%), Gaps = 116/556 (20%)
Query: 124 SNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTH-NPI-- 180
S+NNF IP FLG +L+H+D+S +L+G + L+ L++S + PI
Sbjct: 208 SSNNFSTG-IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 181 ----SFSFLYL-ENFXXXXXXXXXXXX--XXTGVDLSTASDWFLV--------------- 218
S +L L EN TG+DLS + V
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 219 -----TNMLP--------SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD---- 261
+ LP L+VL LS LPE +SL TLDLS N F
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 262 --------NTL-------------VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLE 300
NTL +P L S LV L L FN G IP L +L+ L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVV------FDIGENGFSGN 354
L L N IP L LE L L N L G I S L + N +G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 355 IPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414
IP WIG + +N F G IPAEL SL LDL+ N F+GT+P AM
Sbjct: 506 IPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAM 558
Query: 415 MNQENSMETD----KEY-----DTFTIEL----SILVVMKGRELAYNTMLKLVRC----- 456
Q + + K Y D E ++L R N + C
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 457 ------------------MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA 498
+D+S N LSG IP+E+ ++ L LNL HN ++G IP+ VG
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678
Query: 499 MRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN- 557
+R L +D S N L GRIPQ++S+LT L+ ++LS+NNL+G IP Q + F + F N
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738
Query: 558 NLCGAPLPKNCTDQNV 573
LCG PLP+ C N
Sbjct: 739 GLCGYPLPR-CDPSNA 753
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 143/520 (27%), Positives = 225/520 (43%), Gaps = 58/520 (11%)
Query: 35 ERKALLRFKQDLKDPANRLASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFW 93
E L+ FK L D N L WS + N CT+ GV C D ++L +P
Sbjct: 13 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLS--------SKPLN 63
Query: 94 LEDYDDETSKLIGKINPSXXXXXXXXXXXXSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
+ ++ S SN++ N + F SL +DLSR L
Sbjct: 64 VG---------FSAVSSSLLSLTGLESLFLSNSHI-NGSVSGF-KCSASLTSLDLSRNSL 112
Query: 154 TGMIPH--QLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXXXXXXXXTGVDLST 211
+G + LG+ L++L++S +T F + + +
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNT-----LDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 212 ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271
W L ++ L+ L +S + ++ ++ +L LD+S N F +T +P +L
Sbjct: 168 VVGWVL-SDGCGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNF-STGIP-FLGD 221
Query: 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
S L LD+ N G + T L+ L++ SN F+ IP K L+YLSL EN
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAEN 279
Query: 332 RLQGMISS-------VLVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAE- 383
+ G I L D+ N F G +P + G SN F G++P +
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS-SNNFSGELPMDT 338
Query: 384 LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGR 443
L ++ L +LDLS N FSG LP + NL+A + + D + F+ + + +
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASL-----LTLDLSSNNFSGPILPNLCQNPK 393
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503
NT+ +L L N +G IP ++N L SL+LS N+L+G IP ++G++ L
Sbjct: 394 ----NTLQELY----LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
+ N+L G IPQ + + L L L N+LTG+IP G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 182/458 (39%), Gaps = 78/458 (17%)
Query: 140 MGSLRHIDLSRAELTGMIPHQLGNL-FNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXX 198
M L+ +DLS E +G +P L NL +L LDLS + +FS L N
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-----NFSGPILPN--------- 387
Query: 199 XXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 258
L N +LQ L L +P ++N S L +L LS+N
Sbjct: 388 ------------------LCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFN 428
Query: 259 EFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH 318
T +PS L LS L L L N G IP L + +LE L L N+ IP+ L
Sbjct: 429 YLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 319 KFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDG 378
T L ++SL NRL +G IP WIG + +N F G
Sbjct: 488 NCTNLNWISLSNNRL------------------TGEIPKWIG-RLENLAILKLSNNSFSG 528
Query: 379 QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV 438
IPAEL SL LDL+ N F+GT+P AM Q + +
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFKQSGKIAAN-------------- 568
Query: 439 VMKGRELAYNTMLKLVRCMDLSGN--NLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV 496
+ G+ Y + + +GN G E++ L N++ G
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 497 GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT-QLQGFNASCFA 555
S+ +D S N+LSG IP+ I S+ +L LNL N+++G IP L+G N +
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 556 GNNLCGA-PLPKNCTDQNVPIPAENENGSEDEDEMGYW 592
N L G P + I N N S EMG +
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 185/411 (45%), Gaps = 43/411 (10%)
Query: 141 GSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXXXX 200
G L+H+ +S +++G + + NL++LD+S N S +L +
Sbjct: 178 GELKHLAISGNKISGDV--DVSRCVNLEFLDVS---SNNFSTGIPFLGD------CSALQ 226
Query: 201 XXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 260
+G LS D+ + L++L +S+ +P LP+ SL L L+ N+F
Sbjct: 227 HLDISGNKLS--GDFSRAISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKF 281
Query: 261 DNTLVPSWLFGL-SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT-WLH 318
+P +L G L LDL N F G +P + + LE L L SNNF +P L
Sbjct: 282 TGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 319 KFTRLEYLSLRENRLQGMI-------SSVLVVFDIGENGFSGNI-PAWIGEKXXXXXXXX 370
K L+ L L N G + S+ L+ D+ N FSG I P
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 371 XXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430
+N F G+IP L + L L LS N SGT+P + +L+ + +
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-------------L 447
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
+ L++L +EL Y +K + + L N+L+G+IP ++N L ++LS+N L G
Sbjct: 448 KLWLNMLEGEIPQELMY---VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 491 KIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
+IP+ +G + +L + S N SG IP + L L+L+ N G IP
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 35/229 (15%)
Query: 374 NKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQE---NSMETDKEYDTF 430
N G IP + +LT LH L ++H N SG +P ++ + ++ + N++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 431 TIELSILVVMKGRELA------YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLS 484
++ + + G ++ Y + KL M +S N L+G IP NL L ++LS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 485 HNFLAG---------------KIPEN--------VGAMRSLESIDFSGNLLSGRIPQSIS 521
N L G + +N VG ++L +D N + G +PQ ++
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 522 SLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNN-LCGAPLPKNCT 569
L FL LN+S NNL G+IP G LQ F+ S +A N LCG+PLP CT
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 30/201 (14%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
L L L ++ ++ ++P+ ++ +L TLD SYN TL PS + L +LV +
Sbjct: 100 LTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFD 157
Query: 282 FNSFGGPIPDGLQNLTSL-EHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV 340
N G IPD + + L + + N IP L ++ L N L+G S +
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216
Query: 341 L---------------VVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELC 385
+ FD+G+ G S N+ +N+ G +P L
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL-----------DLRNNRIYGTLPQGLT 265
Query: 386 RLTSLHILDLSHNNFSGTLPR 406
+L LH L++S NN G +P+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ 286
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 31 CIQSERKALLRFKQDLKDPANRLASW-SDGNCC--TWAGVVCNDSTG--RVLELRLGNPF 85
C +++ALL+ K+DL +P L+SW +CC TW GV+C+ T RV L L
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59
Query: 86 LHDDEPFWLED-----------YDDETSKLIGKINPSXXXXXXXXXXXXSNNNFENNQIP 134
L+ +P+ + Y + L+G I P+ ++ N IP
Sbjct: 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIP 118
Query: 135 VFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
FL + +L +D S L+G +P + +L NL
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 136/324 (41%), Gaps = 30/324 (9%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L L+L+YN+ N + +GL +L L+L +N G L + ++DL+ N+
Sbjct: 292 LKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH- 349
Query: 310 ISSIPTWLHKF-TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKXXXXXX 368
I+ I KF +L+ L LR+N L +++ + I + SGN + +
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 369 XXXXSNKFDG-QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEY 427
N+ + I L R+ L IL L+ N FS C + T N
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSS----CSGDQTPSEN--------PSL 453
Query: 428 DTFTIELSILVVMKGRELAYNTM--LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSH 485
+ + ++L + EL ++ L ++ + L+ N L+ P ++L AL+ L+L+
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 486 NFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQ 545
N L ++ A +LE +D S N L P S LS L+++ N + L T
Sbjct: 514 NRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTF 568
Query: 546 LQGFNASCFAGNNLCGAPLPKNCT 569
+ N + + G P C
Sbjct: 569 INWLNHT---NVTIAGPPADIYCV 589
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
LK ++ ++L+ N ++ E L LQ LNLS+N L N + + ID N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLT 537
++ Q+ L L L+L DN LT
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 19/220 (8%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN--EFDNTLVPSWLFGLSHLVFLD 279
L SL+ L ++ N+ E+ + SL LDLS N F S FG + L +LD
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLD 379
Query: 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNF--ISSIPTWLHKFTRLEYLSLRENRLQGMI 337
L FN + L LEHLD + +N +S +L L YL + +
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAF 437
Query: 338 SSV------LVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLH 391
+ + L V + N F N I + + + P L+SL
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 392 ILDLSHNNFSG--TLP-RCINNLTAMMNQENSMETDKEYD 428
+L++SHNNF T P +C+N+L + N + T K+ +
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 248 SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN 307
SSL L ++ N F +P L +L FLDL P +L+SL+ L++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 308 NFIS--SIP-TWLHKFTRLEY-----LSLRENRLQGMISSVLVVFDIGENGFS 352
NF S + P L+ L+Y ++ ++ LQ SS L ++ +N F+
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS-LAFLNLTQNDFA 556
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 26/116 (22%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV ++
Sbjct: 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFISSI 313
S PI P+ NLT+LEHLDL SN I SI
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 13/170 (7%)
Query: 270 FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF--ISSIPTWLHKFTRLEYLS 327
FG + L +LDL FN + L LEHLD + +N +S +L L YL
Sbjct: 75 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLD 132
Query: 328 LRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIP 381
+ + + + L V + N F N I + + + P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 382 AELCRLTSLHILDLSHNNFSG--TLP-RCINNLTAMMNQENSMETDKEYD 428
L+SL +L++SHNNF T P +C+N+L + N + T K+ +
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 248 SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN 307
SSL L ++ N F +P L +L FLDL P +L+SL+ L++ N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 308 NFIS--SIP-TWLHKFTRLEY-----LSLRENRLQGMISSVLVVFDIGENGFS 352
NF S + P L+ L+Y ++ ++ LQ SS L ++ +N F+
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS-LAFLNLTQNDFA 261
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 126 NNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173
N+F+ N +P + +L +DLS+ +L + P +L +LQ L++S
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 19/220 (8%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN--EFDNTLVPSWLFGLSHLVFLD 279
L SL+ L ++ N+ E+ + SL LDLS N F S FG L +LD
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLSFKGCCSQSD-FGTISLKYLD 403
Query: 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNF--ISSIPTWLHKFTRLEYLSLRENRLQGMI 337
L FN + L LEHLD + +N +S +L L YL + +
Sbjct: 404 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAF 461
Query: 338 SSV------LVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLH 391
+ + L V + N F N I + + + P L+SL
Sbjct: 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 392 ILDLSHNNFSG--TLP-RCINNLTAMMNQENSMETDKEYD 428
+L++SHNNF T P +C+N+L + N + T K+ +
Sbjct: 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 24/224 (10%)
Query: 140 MGSLRHIDLSRAELT--GMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXX 197
+ SL +DLSR L+ G +L+YLDLS + +S +FL LE
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429
Query: 198 XXXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN-FSSLYTLDLS 256
+L S++ + L ++ L H + I N SSL L ++
Sbjct: 430 S---------NLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 477
Query: 257 YNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFIS--SIP 314
N F +P L +L FLDL P +L+SL+ L++ NNF S + P
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 315 -TWLHKFTRLEY-----LSLRENRLQGMISSVLVVFDIGENGFS 352
L+ L+Y ++ ++ LQ SS L ++ +N F+
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSS-LAFLNLTQNDFA 580
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 80 VLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 138
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 139 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 26/116 (22%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV ++
Sbjct: 75 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFISSI 313
S PI P+ NLT+LEHLDL SN I SI
Sbjct: 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 188
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
P L++L ++ LH P P N L L+LS+ D T L GL L L+L
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLD-TSNQHLLAGLQDLRHLNLQG 457
Query: 283 NSF-GGPIPDG--LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335
NSF G I LQ + SLE L L S N +S H + +L L N L G
Sbjct: 458 NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 237 NSLPELPIANFSSLYTL---DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGL 293
N L LPI F L L L N+ +L P L+ L +L LG+N +P G+
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGV 152
Query: 294 -QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
LTSL+ L L +N K T L+ L L N+L+
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Query: 207 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY-NEFDNTLV 265
VD S+ + +N+ + L L + N L LP F L L L Y N+ +
Sbjct: 21 VDCSSKKLTAIPSNIPADTKKLDLQS----NKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 266 PSWLFG-LSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWLHKFTRL 323
P+ +F L +L L + N +P G+ L +L L L N S P T+L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 324 EYLSLRENRLQGMISSV 340
YLSL N LQ + V
Sbjct: 136 TYLSLGYNELQSLPKGV 152
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 300 EHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFS 352
+ LDL+SN +SS+P+ H+ T+L L L +N+LQ + + + L + +N
Sbjct: 40 KKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 353 GNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI-NNL 411
+P + ++ N+ P LT L L L +N +LP+ + + L
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156
Query: 412 TAM 414
T++
Sbjct: 157 TSL 159
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
P L++L L+ LH + P+ P N L L+L+Y F +T L GL L L+L
Sbjct: 397 PQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYC-FLDTSNQHLLAGLPVLRHLNLKG 455
Query: 283 NSF-GGPIPDG--LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333
N F G I LQ + SLE L L S +S H ++ ++ L N L
Sbjct: 456 NHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 107/282 (37%), Gaps = 47/282 (16%)
Query: 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR 305
NF L + +N N+ S G F D+ + GL + S+E L+L+
Sbjct: 205 NFGGTPNLSVIFNGLQNSTTQSLWLG----TFEDIDDEDISSAMLKGLCEM-SVESLNLQ 259
Query: 306 SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKXXX 365
+ F T FT+L+ L L L+G+ S G G +
Sbjct: 260 EHRFSDISSTTFQCFTQLQELDLTATHLKGLPS--------GMKGLN------------L 299
Query: 366 XXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR------CINNLTAMMNQEN 419
N FD +LC++++ + L+H G + + C+ L + +
Sbjct: 300 LKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDL 354
Query: 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKL----------VRCMDLSGNNLSGDIP 469
S + D +++L L ++ L++N L L + +DL+ L + P
Sbjct: 355 SHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
Query: 470 EE-MTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
+ NL LQ LNL++ FL + + L ++ GN
Sbjct: 415 QSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN 456
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 454 VRCMDLSGNNLSGD--IPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511
++ +DLS N++ ++ NL LQ+LNLSHN G + LE +D +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 512 LSGRIPQS-ISSLTFLSHLNLS 532
L PQS +L FL LNL+
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLT 430
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 134/343 (39%), Gaps = 45/343 (13%)
Query: 230 LSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPI 289
++ CS H L +P S++ L+L++N+ L P+ S L LD GFNS
Sbjct: 8 VADCS-HLKLTHIPDDLPSNITVLNLTHNQL-RRLPPTNFTRYSQLAILDAGFNSISKLE 65
Query: 290 PDGLQNLTSLEHLDLRSNNFISSIPTWLHKF-TRLEYLSLRENRLQGMISSV------LV 342
P+ Q L L+ L+L+ N +S I F T L L L N + + S+ L+
Sbjct: 66 PELCQILPLLKVLNLQHNE-LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLI 124
Query: 343 VFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRL--TSLHILDLSHNNF 400
D+ NG S G + NK EL L +SL LDLS N
Sbjct: 125 KLDLSHNGLSS-TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPL 183
Query: 401 SGTLPRC---INNLTAMM---NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLV 454
P C I L A++ Q N T+K ELS ++ LA N +L
Sbjct: 184 KEFSPGCFQTIGKLFALLLNNAQLNPHLTEK----LCWELSN-TSIQNLSLANNQLLATS 238
Query: 455 RC------------MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSL 502
+DLS NNL + L +L+ L+L +N + P + + +L
Sbjct: 239 ESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL 298
Query: 503 ESIDFSGNLLSGRIPQ---------SISSLTFLSHLNLSDNNL 536
+ + S L +L +LN+ DNN+
Sbjct: 299 RYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 456 CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515
C L ++ D+P +T LNL+HN L P N L +D N +S
Sbjct: 11 CSHLKLTHIPDDLPSNIT------VLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKL 64
Query: 516 IPQSISSLTFLSHLNLSDNNLT 537
P+ L L LNL N L+
Sbjct: 65 EPELCQILPLLKVLNLQHNELS 86
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L TLDLS+N+ + +P L L LD+ FN L+ L L+ L L+ N
Sbjct: 79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMISSVL 341
+ P L +LE LSL N+L + + +L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 237 NSLPELPIANFSSLY---TLDLSYNEFDNTLVPSWLFG-LSHLVFLDLGFNSFGGPIPDG 292
N L LP+ F SL LDL N+ T++PS +F L HL L + N +P G
Sbjct: 74 NQLGALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTE-LPRG 130
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLS 327
++ LT L HL L N + SIP F RL L+
Sbjct: 131 IERLTHLTHLALDQNQ-LKSIPHG--AFDRLSSLT 162
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L TLDLS+N+ + +P L L LD+ FN L+ L L+ L L+ N
Sbjct: 79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMISSVL 341
+ P L +LE LSL N+L + + +L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L TLDLS+N+ + +P L L LD+ FN L+ L L+ L L+ N
Sbjct: 79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMISSVL 341
+ P L +LE LSL N+L + + +L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L TLDLS+N+ + +P L L LD+ FN L+ L L+ L L+ N
Sbjct: 79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMISSVL 341
+ P L +LE LSL N+L + + +L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELPI--ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
V LP L L LS HN L LP+ +L LD+S+N +L L GL L
Sbjct: 72 VDGTLPVLGTLDLS----HNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGEL 126
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL-- 333
L L N P L LE L L +NN L+ L+ L L+EN L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 334 --QGMISSVLVVF 344
+G S L+ F
Sbjct: 187 IPKGFFGSHLLPF 199
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--- 500
+L + L ++ +DLS N L +P L AL L++S N L +P +GA+R
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLG 124
Query: 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
L+ + GN L P ++ L L+L++NNLT ++P G
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELPI--ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
V LP L L LS HN L LP+ +L LD+S+N +L L GL L
Sbjct: 72 VDGTLPVLGTLDLS----HNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGEL 126
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL-- 333
L L N P L LE L L +NN L+ L+ L L+EN L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 334 --QGMISSVLVVF 344
+G S L+ F
Sbjct: 187 IPKGFFGSHLLPF 199
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--- 500
+L + L ++ +DLS N L +P L AL L++S N L +P +GA+R
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLG 124
Query: 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
L+ + GN L P ++ L L+L++NNLT ++P G
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L TLDLS+N+ + +P L L LD+ FN L+ L L+ L L+ N
Sbjct: 80 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMISSVL 341
+ P L +LE LSL N L + + +L
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 169
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELPI--ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
V LP L L LS HN L LP+ +L LD+S+N +L L GL L
Sbjct: 73 VDGTLPVLGTLDLS----HNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGEL 127
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL-- 333
L L N P L LE L L +NN L+ L+ L L+EN L
Sbjct: 128 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 187
Query: 334 --QGMISSVLVVF 344
+G S L+ F
Sbjct: 188 IPKGFFGSHLLPF 200
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--- 500
+L + L ++ +DLS N L +P L AL L++S N L +P +GA+R
Sbjct: 70 KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLG 125
Query: 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
L+ + GN L P ++ L L+L++NNLT ++P G
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 167
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELPI--ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
V LP L L LS HN L LP+ +L LD+S+N +L L GL L
Sbjct: 72 VDGTLPVLGTLDLS----HNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGEL 126
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL-- 333
L L N P L LE L L +NN L+ L+ L L+EN L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 334 --QGMISSVLVVF 344
+G S L+ F
Sbjct: 187 IPKGFFGSHLLPF 199
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--- 500
+L + L ++ +DLS N L +P L AL L++S N L +P +GA+R
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLG 124
Query: 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
L+ + GN L P ++ L L+L++NNLT ++P G
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 133/362 (36%), Gaps = 65/362 (17%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIAN-----FSSLYTLDLSYNEFDNTLVPSWLFGLSHLV 276
L LQ LK+ P L I N SSL L L YN+F L GL++L
Sbjct: 53 LQDLQFLKV-----EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLE 106
Query: 277 FLDLGFNSFGGPIPDG--LQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRL 333
L L + G + G + LTSLE L LR NN P ++ R L L N++
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
Query: 334 QGMISSVLVVFD--------IGENGFSGNIPAWIG-EKXXXXXXXXXXSNKFDGQIPAEL 384
+ + L+ F + W+G EK N F
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC---------GNPFKN------ 211
Query: 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETD-------------KEYDTFT 431
TS+ LDLS N F ++ + + A ++ + ++ K+ D FT
Sbjct: 212 ---TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 432 IELSILVVMKGRELAYNTMLKLVRC----------MDLSGNNLSGDIPEEMTNLLALQSL 481
+ +K +L+ + + L++ + L+ N ++ L L L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 482 NLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
NLS NFL + LE +D S N + QS L L L L N L +P
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP 387
Query: 542 LG 543
G
Sbjct: 388 DG 389
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 237 NSLPELPIANFSSLYTLDLSYNEFDN---TLVPSWLFGLSHLVFLDLGFNSFGGPIPDGL 293
NS+ EL +FS L L E + + GLS L+ L L +N F
Sbjct: 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 294 QNLTSLEHLDLRSNNFISSIPT--WLHKFTRLEYLSLRENRLQGM 336
L +LE L L N ++ + + T LE L LR+N ++ +
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELPI--ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
V LP L L LS HN L LP+ +L LD+S+N +L L GL L
Sbjct: 72 VDGTLPVLGTLDLS----HNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGEL 126
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL-- 333
L L N P L LE L L +NN L+ L+ L L+EN L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 334 --QGMISSVLVVF 344
+G S L+ F
Sbjct: 187 IPKGFFGSHLLPF 199
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--- 500
+L + L ++ +DLS N L +P L AL L++S N L +P +GA+R
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLG 124
Query: 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
L+ + GN L P ++ L L+L++NNLT ++P G
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L TLDLS+N+ + +P L L LD+ FN L+ L L+ L L+ N
Sbjct: 79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMISSVL 341
+ P L +LE LSL N L + + +L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLL 168
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--- 500
+L + L ++ +DLS N L +P L AL L++S N L +P +GA+R
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLG 124
Query: 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
L+ + GN L P ++ L L+L++N+LT ++P G
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAG 166
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 117/303 (38%), Gaps = 47/303 (15%)
Query: 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR 305
NF L + + N+ + S G F D+ + +GL + S+E ++L+
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLG----TFEDMDDEDISPAVFEGLCEM-SVESINLQ 262
Query: 306 SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKXXX 365
+ F + H F+ L+ L L L + S ++ + + + S N
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN----------- 311
Query: 366 XXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR------CINNLTAMMNQEN 419
KF+ LC++++ + L+H + G R C+ NL + +
Sbjct: 312 ---------KFEN-----LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKL----------VRCMDLSGNNLS-GDI 468
S + + D ++L L ++ L+YN L L + +DL+ L D
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 469 PEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSH 528
NL L+ LNLSH+ L + + +L+ ++ GN Q +SL L
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 529 LNL 531
L +
Sbjct: 478 LEI 480
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 443 RELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSL 502
+EL+ L L+ DLS N +S + +N+ L +L LS+N L P ++SL
Sbjct: 48 KELSNYKHLTLI---DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 503 ESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536
+ GN +S + + L+ LSHL + N L
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 9/146 (6%)
Query: 267 SWLFGLSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEY 325
S L L++L +L L N +P+G+ LT+L+ L L N S K T L Y
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 326 LSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQ 379
L+L N+LQ + V L D+ N ++P + +K N+
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 380 IPAELCRLTSLHILDLSHNNFSGTLP 405
RLTSL + L N + T P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 238 SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QN 295
SLP ++L L L N+ + +P +F L++L +L+L N +P G+
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS--LPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDK 155
Query: 296 LTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV 340
LT+L LDL N S K T+L+ L L +N+L+ + V
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 273 SHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
+ +LDL NS +P+G+ LTSL L L N S +K T L YL+L N
Sbjct: 28 AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86
Query: 332 RLQGMISSVL-VVFDIGENGFSGN----IPAWIGEKXXXXXXXXXXSNKFDGQIPAELCR 386
+LQ + + V + + E + N +P + +K N+ R
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 387 LTSLHILDLSHNNFSGTLP 405
LTSL + L N + T P
Sbjct: 147 LTSLQYIWLHDNPWDCTCP 165
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 253 LDLSYNEFDNTLVPSWLFG-LSHLVFLDLGFNSFGGPIPDGLQN-LTSLEHLDLRSNNFI 310
LDL N + +P+ +F L+ L L LG N +P+G+ N LTSL +L+L +N
Sbjct: 33 LDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 311 SSIPTWLHKFTRLEYLSLRENRLQGMISSV 340
S K T+L+ L+L N+LQ + V
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGV 119
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 237 NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296
S +P +++ +LDLS+N+ + L ++L L L + D +L
Sbjct: 15 RSFTSIPSGLTAAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
SLEHLDL N+ S +W + L+YL+L N Q +
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 237 NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296
S +P +++ +LDLS+N+ + L ++L L L + D +L
Sbjct: 41 RSFTSIPSGLTAAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
SLEHLDL N+ S +W + L+YL+L N Q +
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 139
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 15/195 (7%)
Query: 140 MGSLRHIDLSRAELT--GMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXX 197
+ SL +DLSR L+ G +L+YLDLS + +S +FL LE
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 198 XXXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN-FSSLYTLDLS 256
+L S++ + L ++ L H + I N SSL L ++
Sbjct: 406 S---------NLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 257 YNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW 316
N F +P L +L FLDL P +L+SL+ L++ SN S
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 317 LHKFTRLEYLSLREN 331
+ T L+ + L N
Sbjct: 514 FDRLTSLQKIWLHTN 528
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV ++
Sbjct: 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFIS 311
S PI P+ NLT+LEHLDL SN S
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 225 LQVLKLSACSLHNS----LPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L+ + C L S L + ++F+ L L L+ NE N + + +GL+HL L L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLKELAL 330
Query: 281 GFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLS 327
N +PDG+ LTSL+ + L +N + S P R++YLS
Sbjct: 331 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLS 370
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 237 NSLPELPIANFSSLYTLDLSYNEFDN---TLVPSWLFGLSHLVFLDLGFNSFGGPIPDGL 293
NS+ EL +FS L L E + + GLS L+ L L +N F
Sbjct: 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 294 QNLTSLEHLDLRSNNFISSIPT--WLHKFTRLEYLSLRENRLQGM 336
L +LE L L N ++ + + T LE L LR+N ++ +
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 57 VLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 115
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 116 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV ++
Sbjct: 52 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFIS 311
S PI P+ NLT+LEHLDL SN S
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 58 VLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 116
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 117 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV ++
Sbjct: 53 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFIS 311
S PI P+ NLT+LEHLDL SN S
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 57 VLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 115
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 116 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV ++
Sbjct: 52 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFIS 311
S PI P+ NLT+LEHLDL SN S
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV ++
Sbjct: 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFIS 311
S PI P+ NLT+LEHLDL SN S
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 238 SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QN 295
SLP ++L L L N+ + +P +F L++L +L L N +P G+
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS--LPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDK 155
Query: 296 LTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGMISSV 340
LT+L LDL NN + S+P + K T+L+ LSL +N+L+ + V
Sbjct: 156 LTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 118/298 (39%), Gaps = 38/298 (12%)
Query: 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISS 312
LDL N TL HL L+L N P NL +L L LRSN +
Sbjct: 37 LDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKL 94
Query: 313 IPTWLHK-FTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGEKXXX 365
IP + + L L + EN++ ++ + L ++G+N +I +
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-----VYISHR--- 146
Query: 366 XXXXXXXSNKFDG-----QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420
F G Q+ E C LTS+ LSH G + + +L +N
Sbjct: 147 ---------AFSGLNSLEQLTLEKCNLTSIPTEALSH--LHGLIVLRLRHLN--INAIRD 193
Query: 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKL-VRCMDLSGNNLSGDIPEEMTNLLALQ 479
+ Y +E+S + + N + L + + ++ NL+ + +L+ L+
Sbjct: 194 YSFKRLYRLKVLEISHWPYLD--TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251
Query: 480 SLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
LNLS+N ++ + + L+ I G L+ P + L +L LN+S N LT
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 421 METDKEYDT---FTIELSILVV--MKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL 475
M D +YD ++LS L + + Y+ + +L L+GN+L+ ++P E+ NL
Sbjct: 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY----LNGNSLT-ELPAEIKNL 269
Query: 476 LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNN 535
L+ L+LSHN L +P +G+ L+ F N+++ +P +L L L + N
Sbjct: 270 SNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNP 327
Query: 536 LTGKI 540
L +
Sbjct: 328 LEKQF 332
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 237 NSLPELP--IANFSSLYTLDLSYNEFDNTLVPSWL---FGLSHLVFLDLGFNSFGGPIPD 291
NSL ELP I N S+L LDLS+N T +P+ L F L + F F++ +P
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRL--TSLPAELGSCFQLKYFYF----FDNMVTTLPW 310
Query: 292 GLQNLTSLEHLDLRSN 307
NL +L+ L + N
Sbjct: 311 EFGNLCNLQFLGVEGN 326
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 379 QIPAELCRLTSLHILDLSHNNFSGTLP 405
++PAE+ L++L +LDLSHN + +LP
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLP 286
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG-LSHLVFLDLGFNSFGG 287
+++ CS H L ++P +++ L+L++N+ +P+ F S L LD+GFN+
Sbjct: 7 EVADCS-HLKLTQVPDDLPTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISK 63
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKF-TRLEYLSLRENRLQGMISSV------ 340
P+ Q L L+ L+L+ N +S + F T L L L N +Q + ++
Sbjct: 64 LEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 341 LVVFDIGENGFSG 353
L+ D+ NG S
Sbjct: 123 LITLDLSHNGLSS 135
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 452 KLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511
++ C L + D+P +T LNL+HN L N L S+D N
Sbjct: 7 EVADCSHLKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 512 LSGRIPQSISSLTFLSHLNLSDNNLT 537
+S P+ L L LNL N L+
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELS 86
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++LS + + AY ++ L + L+GN + + L +LQ L LA
Sbjct: 58 VLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVALETNLAS 116
Query: 491 KIPENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNL 536
+G +++L+ ++ + NL+ S ++P+ S+LT L HL+LS N +
Sbjct: 117 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW--LFGLSHLVFLD 279
P LQVL LS C + ++ + + S L TL L+ N + + ++ L L LV L+
Sbjct: 53 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 280 LGFNSFGG-PI---------------------PDGLQNLTSLEHLDLRSNNFIS 311
S PI P+ NLT+LEHLDL SN S
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG-LSHLVFLDLGFNSFGG 287
+++ CS H L ++P +++ L+L++N+ +P+ F S L LD+GFN+
Sbjct: 17 EVADCS-HLKLTQVPDDLPTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISK 73
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKF-TRLEYLSLRENRLQGMISSV------ 340
P+ Q L L+ L+L+ N +S + F T L L L N +Q + ++
Sbjct: 74 LEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 132
Query: 341 LVVFDIGENGFSG 353
L+ D+ NG S
Sbjct: 133 LITLDLSHNGLSS 145
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 452 KLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511
++ C L + D+P +T LNL+HN L N L S+D N
Sbjct: 17 EVADCSHLKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 70
Query: 512 LSGRIPQSISSLTFLSHLNLSDNNLT 537
+S P+ L L LNL N L+
Sbjct: 71 ISKLEPELCQKLPMLKVLNLQHNELS 96
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG-LSHLVFLDLGFNSFGG 287
+++ CS H L ++P +++ L+L++N+ +P+ F S L LD+GFN+
Sbjct: 12 EVADCS-HLKLTQVPDDLPTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISK 68
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKF-TRLEYLSLRENRLQGMISSV------ 340
P+ Q L L+ L+L+ N +S + F T L L L N +Q + ++
Sbjct: 69 LEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 127
Query: 341 LVVFDIGENGFSG 353
L+ D+ NG S
Sbjct: 128 LITLDLSHNGLSS 140
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 452 KLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511
++ C L + D+P +T LNL+HN L N L S+D N
Sbjct: 12 EVADCSHLKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 65
Query: 512 LSGRIPQSISSLTFLSHLNLSDNNLT 537
+S P+ L L LNL N L+
Sbjct: 66 ISKLEPELCQKLPMLKVLNLQHNELS 91
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ 518
++GNN+ ++PE + NL L ++ +N L +P+ SLE+++ N L+ +P+
Sbjct: 221 VAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE 274
Query: 519 SISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAP 563
SLTFL ++S+N +G L L NAS +LC P
Sbjct: 275 LPQSLTFL---DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP 316
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 236 HNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD---LGFNSFGGPI 289
+N L L F + L TL L+ N+ + +P +F HL LD LG N +
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVF--DHLTQLDKLYLGGNQLKS-L 122
Query: 290 PDGL-QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
P G+ LT L+ L L +N S K T L+ LSL N+LQ +
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 236 HNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD---LGFNSFGGPI 289
+N L L F + L TL L+ N+ + +P +F HL LD LG N +
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVF--DHLTQLDKLYLGGNQLKS-L 122
Query: 290 PDGL-QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
P G+ LT L+ L L +N S K T L+ LSL N+LQ +
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
PIAN + LY+L L+YN+ ++ S L L+ L + N P + N T L L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQITDITP--VANXTRLNSL 226
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS----SVLVVFDIGENGFS 352
+ +N P L ++L +L + N++ + + + L ++G N S
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQIS 278
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 27/161 (16%)
Query: 380 IPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVV 439
+P+ELC+L ++NN +LP + L + +N + + T EL L
Sbjct: 159 LPSELCKL-------WAYNNQLTSLPMLPSGLQELSVSDNQLAS---LPTLPSELYKLWA 208
Query: 440 MKGRELAYNTMLKLVRCMDLSGNNLSG--DIPEEMTNLLA--------------LQSLNL 483
R + + ++ + +SGN L+ +P E+ L+ L SL++
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSV 268
Query: 484 SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT 524
N L ++PE++ + S +++ GN LS R Q++ +T
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 222 LPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L SLQ L S+ N + +L P+AN ++L LD+S N+ + V + L L L+ +
Sbjct: 150 LTSLQQLSFSS----NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN- 204
Query: 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
N P G+ LT+L+ L L N + I T L T L L L N++ +
Sbjct: 205 --NQISDITPLGI--LTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNL 254
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 222 LPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L SLQ L S+ N + +L P+AN ++L LD+S N+ + V + L L L+ +
Sbjct: 150 LTSLQQLNFSS----NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN- 204
Query: 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
N P G+ LT+L+ L L N + I T L T L L L N++ +
Sbjct: 205 --NQISDITPLGI--LTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNL 254
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 222 LPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L SLQ L S+ N + +L P+AN ++L LD+S N+ + V + L L L+ +
Sbjct: 150 LTSLQQLSFSS----NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN- 204
Query: 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
N P G+ LT+L+ L L N + I T L T L L L N++ +
Sbjct: 205 --NQISDITPLGI--LTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNL 254
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513
V+ +DLS N ++ ++ + LQ+L L+ N + ++ ++ SLE +D S N LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 514 GRIP---QSISSLTFLSHL 529
+ +SSLTFL+ L
Sbjct: 88 NLSSSWFKPLSSLTFLNLL 106
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 230 LSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP 288
L S N + +L P+AN ++L LD+S N+ + V + L L L+ + N
Sbjct: 157 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 213
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
P G+ LT+L+ L L N + I T L T L L L N++ +
Sbjct: 214 TPLGI--LTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNL 257
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513
V+ +DLS N ++ ++ + LQ+L L+ N + ++ ++ SLE +D S N LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 514 GRIP---QSISSLTFLSHL 529
+ +SSLTFL+ L
Sbjct: 114 NLSSSWFKPLSSLTFLNLL 132
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 230 LSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP 288
L S N + +L P+AN ++L LD+S N+ + V + L L L+ + N
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 214
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
P G+ LT+L+ L L N + I T L T L L L N++ +
Sbjct: 215 TPLGI--LTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNL 258
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 207 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266
+D+ T +F ++ + Q + S LP + +F + L+L N+ +
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEID 91
Query: 267 SWLFGLSHLV-FLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWL-HKFTRLE 324
++ F +H + L +GFN+ P QN+ L L L N+ +SS+P + H +L
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLT 150
Query: 325 YLSLRENRLQGM 336
LS+ N L+ +
Sbjct: 151 TLSMSNNNLERI 162
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV 496
V+ +DL N + IP+++T+L ALQ LN++ N L +P+ V
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGV 492
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 236 HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
HN L + +SL LDLS+N+FD V L+ L FL L F
Sbjct: 109 HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 47/220 (21%)
Query: 454 VRCMDLSGNNLSGDIPEEMTNLLA-----LQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508
V ++LSGN+L +E+ +LA + SLNLS NFL+ K + + +++L +I F+
Sbjct: 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL--VKTLAAIPFT 110
Query: 509 GNLL-----------SGRIPQSISSL-TFLSHLNLSDNNLTGKIP------LGTQLQGFN 550
+L S Q+ S+L ++ LNL N+L K L N
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 551 ASCFAGNNLCGAPLPKNCTDQN---VPIPAENENGSEDEDEMGYWLYVSTAFGF------ 601
+ GNNL KNC + IPA + + +G Y A+ F
Sbjct: 171 SLNLRGNNLAS----KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226
Query: 602 VVG----FWCVIGPLLINRR-----WRYKYCHFLDRIIAK 632
VV C+ GP L N + ++ +LD I K
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
L +L+ L L C+L + +P L L L+LS N D + P GL+ L L L
Sbjct: 155 LVNLRYLNLGMCNLKD-IPNL--TALVRLEELELSGNRLD-LIRPGSFQGLTSLRKLWLM 210
Query: 282 FNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
+ +L SLE L+L NN +S RLE + L N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 238 SLPELPIANFSSLYTLDL-SYNEFDNTLVPSWLFGLSHLV-FLDLGFNSFGGPIPDGLQN 295
++ +LP A S ++L + N+ + ++ F +H + L +GFN+ P QN
Sbjct: 56 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115
Query: 296 LTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGM 336
+ L L L N+ +SS+P + H +L LS+ N L+ +
Sbjct: 116 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERI 156
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
P+AN ++L LD+S N+ + V + L L L+ + N P G+ LT+L+ L
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITPLGI--LTNLDEL 221
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
L N + I T L T L L L N++ +
Sbjct: 222 SLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNL 253
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
P+AN ++L LD+S N+ + V + L L L+ + N P G+ LT+L+ L
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITPLGI--LTNLDEL 221
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
L N + I T L T L L L N++ +
Sbjct: 222 SLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNL 253
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
Query: 289 IPDGL-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDI 346
+P G+ LT L L L S N I S+P + K T+L L L EN+LQ
Sbjct: 43 LPHGVFDKLTQLTKLSL-SQNQIQSLPDGVFDKLTKLTILYLHENKLQ------------ 89
Query: 347 GENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406
++P + +K +N+ RLTSL + L N + + PR
Sbjct: 90 -------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Query: 407 CINNLTAMMNQENSME 422
I+ L+ +N+ + E
Sbjct: 143 -IDYLSRWLNKNSQKE 157
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 237 NSLPELPIANFSSLY---TLDLSYNEFDNTLVPSWLFGLSHLVFLDL---GFNSFGGPIP 290
N+L + A F+ L LDLS N + P+ GL HL L L G G P
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELG---P 121
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333
+ L +L++L L+ NN + L +L L NR+
Sbjct: 122 GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|3KQ4|B Chain B, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|D Chain D, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|F Chain F, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 457
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 32 IQSERKALLRFKQDLKDPANRLASWSDGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEP 91
I K L+FK D D + +++ DG+ T G S+G + P+ H E
Sbjct: 202 ISHSNKLWLKFKSDQIDTRSGFSAYWDGS-STGCGGNLTTSSGTFISPNYPMPYYHSSEC 260
Query: 92 FW 93
+W
Sbjct: 261 YW 262
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESI 505
++ +DL N + IP+++ L ALQ LN++ N L +P+ + + SL+ I
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKI 473
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
L +L+ L L C+L + +P L L L+LS N D + P GL+ L L L
Sbjct: 155 LVNLRYLNLGMCNLKD-IPNL--TALVRLEELELSGNRLD-LIRPGSFQGLTSLRKLWLM 210
Query: 282 FNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
+ +L SLE L+L NN +S RLE + L N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN 308
SL L L N+ S L GL++L L L FNS L N L L L +N
Sbjct: 193 SLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 309 FISSIPTWL--HKFTRLEYL 326
+ +P L HK+ ++ YL
Sbjct: 252 LV-KVPGGLADHKYIQVVYL 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,779,819
Number of Sequences: 62578
Number of extensions: 730395
Number of successful extensions: 1947
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 383
length of query: 636
length of database: 14,973,337
effective HSP length: 105
effective length of query: 531
effective length of database: 8,402,647
effective search space: 4461805557
effective search space used: 4461805557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)