Query 006657
Match_columns 636
No_of_seqs 656 out of 5134
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 12:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.8E-62 1.3E-66 574.7 42.0 518 32-563 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 9E-48 1.9E-52 454.1 34.5 450 93-559 70-583 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-38 2.5E-43 322.6 4.1 424 62-563 52-480 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.4E-36 9.6E-41 304.0 8.6 353 117-542 79-434 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.5E-38 1.8E-42 303.7 -11.3 385 94-537 70-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 3.5E-35 7.5E-40 299.1 -3.6 354 103-511 18-373 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 4.7E-35 1E-39 298.2 -2.9 348 113-537 4-352 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 2.4E-34 5.2E-39 279.8 -12.5 426 103-557 56-538 (565)
9 KOG0618 Serine/threonine phosp 100.0 6.9E-31 1.5E-35 280.0 -1.5 382 76-536 47-488 (1081)
10 KOG0618 Serine/threonine phosp 99.9 2.6E-29 5.7E-34 268.0 -1.3 406 114-557 43-486 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.3E-23 7.2E-28 245.8 26.2 261 111-406 553-820 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.1E-22 6.7E-27 237.5 27.0 340 135-536 552-905 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 6.7E-22 1.4E-26 218.5 16.8 62 454-520 404-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 1.3E-21 2.9E-26 216.1 17.5 267 116-498 201-467 (788)
15 KOG4237 Extracellular matrix p 99.8 2.3E-23 4.9E-28 203.4 -3.9 398 98-534 73-498 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 2.1E-20 4.5E-25 208.0 18.1 265 28-334 57-359 (754)
17 KOG4237 Extracellular matrix p 99.8 2E-22 4.2E-27 196.9 -5.1 116 448-563 270-385 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 4.4E-19 9.6E-24 197.5 14.4 246 198-537 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.5E-19 5.4E-24 184.9 5.3 283 201-536 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.4E-23 180.1 4.7 285 169-512 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.7E-23 151.7 -4.5 183 295-542 31-217 (264)
22 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 143.9 -1.7 167 244-475 29-195 (264)
23 PLN03150 hypothetical protein; 99.6 3.1E-15 6.7E-20 166.3 12.0 117 453-569 419-538 (623)
24 PLN03150 hypothetical protein; 99.5 2.8E-14 6.1E-19 158.7 13.0 130 29-179 367-504 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.8E-18 141.5 -3.4 196 271-535 73-271 (722)
26 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.5E-16 131.6 7.4 200 251-519 96-296 (394)
27 COG4886 Leucine-rich repeat (L 99.2 1.8E-11 3.9E-16 130.1 8.7 202 226-497 96-298 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 4.4E-13 9.6E-18 137.6 -3.5 195 247-511 74-271 (722)
29 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 123.8 0.1 195 194-401 143-339 (505)
30 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.9E-16 123.3 0.6 214 112-334 117-339 (505)
31 KOG1259 Nischarin, modulator o 99.0 7.7E-11 1.7E-15 112.2 2.3 209 106-335 204-413 (490)
32 KOG1909 Ran GTPase-activating 99.0 1.7E-11 3.8E-16 119.3 -2.2 245 74-333 30-310 (382)
33 KOG1909 Ran GTPase-activating 99.0 4E-11 8.8E-16 116.8 -2.1 253 110-401 24-311 (382)
34 PF14580 LRR_9: Leucine-rich r 99.0 9.4E-10 2E-14 100.8 6.3 127 194-329 16-148 (175)
35 PF14580 LRR_9: Leucine-rich r 98.9 8.1E-10 1.8E-14 101.2 3.9 84 138-236 16-101 (175)
36 KOG1259 Nischarin, modulator o 98.9 5.6E-10 1.2E-14 106.4 2.8 134 245-404 281-415 (490)
37 PF08263 LRRNT_2: Leucine rich 98.8 5.3E-09 1.1E-13 72.1 4.4 38 33-70 2-43 (43)
38 KOG0531 Protein phosphatase 1, 98.8 6E-10 1.3E-14 118.8 -2.6 249 113-406 69-323 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 5.8E-09 1.2E-13 78.5 3.3 60 453-512 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 4.2E-09 9.1E-14 79.2 2.3 61 476-536 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.4E-08 3.1E-13 115.8 5.6 59 114-174 569-627 (889)
42 KOG0531 Protein phosphatase 1, 98.7 3.3E-09 7.1E-14 113.1 0.2 107 220-334 92-199 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.6 9.9E-08 2.1E-12 109.0 9.8 302 197-542 523-847 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.4E-09 3E-14 103.8 -6.8 184 116-309 185-375 (419)
45 KOG2982 Uncharacterized conser 98.4 5.3E-08 1.1E-12 93.2 0.4 88 114-208 69-157 (418)
46 KOG1859 Leucine-rich repeat pr 98.4 5.8E-09 1.3E-13 110.5 -7.9 161 109-286 102-292 (1096)
47 KOG4579 Leucine-rich repeat (L 98.4 3E-08 6.4E-13 84.2 -2.4 87 454-543 79-165 (177)
48 KOG1859 Leucine-rich repeat pr 98.3 2.3E-08 4.9E-13 106.2 -4.7 82 454-539 211-294 (1096)
49 KOG2982 Uncharacterized conser 98.3 3.2E-07 6.9E-12 88.0 2.7 140 194-334 68-212 (418)
50 KOG2120 SCF ubiquitin ligase, 98.2 5.5E-08 1.2E-12 93.1 -3.6 158 249-408 186-356 (419)
51 COG5238 RNA1 Ran GTPase-activa 98.2 3.4E-07 7.3E-12 86.6 -0.0 140 193-334 88-255 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.1 1.6E-07 3.4E-12 88.9 -3.7 198 75-286 31-255 (388)
53 KOG4579 Leucine-rich repeat (L 98.1 4.6E-07 1E-11 77.1 -0.5 56 354-411 67-122 (177)
54 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.2E-10 55.0 2.6 35 478-513 3-37 (44)
55 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 7E-10 53.3 3.4 36 117-154 2-37 (44)
56 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 75.0 9.1 73 272-350 51-123 (426)
57 PRK15386 type III secretion pr 97.6 0.00023 5.1E-09 73.5 9.5 76 294-400 49-124 (426)
58 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4E-10 88.4 1.1 62 194-259 170-231 (699)
59 KOG3665 ZYG-1-like serine/thre 97.5 2.8E-05 6.2E-10 86.9 1.0 154 116-280 122-282 (699)
60 KOG1644 U2-associated snRNP A' 97.3 0.00025 5.5E-09 64.9 4.6 87 116-212 42-128 (233)
61 KOG2739 Leucine-rich acidic nu 97.3 0.00014 3E-09 69.4 2.3 114 108-231 35-151 (260)
62 KOG1644 U2-associated snRNP A' 96.8 0.0021 4.5E-08 59.0 5.3 37 294-330 110-149 (233)
63 KOG2739 Leucine-rich acidic nu 96.8 0.0012 2.6E-08 63.1 3.6 43 194-236 62-104 (260)
64 KOG4341 F-box protein containi 96.7 5.4E-05 1.2E-09 76.4 -6.4 267 113-400 161-438 (483)
65 KOG2123 Uncharacterized conser 96.6 0.00013 2.9E-09 69.7 -4.1 79 246-327 39-123 (388)
66 PF13306 LRR_5: Leucine rich r 96.4 0.0057 1.2E-07 53.4 5.4 38 242-281 29-66 (129)
67 PF13306 LRR_5: Leucine rich r 96.2 0.0086 1.9E-07 52.3 5.6 85 242-330 6-90 (129)
68 KOG4341 F-box protein containi 96.1 0.0004 8.8E-09 70.3 -3.9 87 451-537 345-439 (483)
69 KOG2123 Uncharacterized conser 96.1 0.00031 6.7E-09 67.3 -4.7 82 115-208 18-99 (388)
70 PF00560 LRR_1: Leucine Rich R 95.2 0.0069 1.5E-07 34.7 0.5 7 457-463 5-11 (22)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.0085 1.9E-07 34.3 0.6 21 142-163 1-21 (22)
72 KOG1947 Leucine rich repeat pr 94.7 0.0058 1.3E-07 66.7 -1.4 36 115-150 187-223 (482)
73 KOG1947 Leucine rich repeat pr 94.5 0.01 2.2E-07 64.7 -0.1 116 109-231 207-329 (482)
74 KOG4308 LRR-containing protein 94.4 0.00026 5.6E-09 75.9 -12.4 192 116-311 87-304 (478)
75 KOG0473 Leucine-rich repeat pr 93.9 0.0021 4.6E-08 60.1 -5.7 85 450-537 40-124 (326)
76 KOG0473 Leucine-rich repeat pr 90.8 0.0073 1.6E-07 56.6 -6.4 84 73-178 41-124 (326)
77 PF13504 LRR_7: Leucine rich r 90.2 0.17 3.7E-06 26.8 1.1 6 481-486 6-11 (17)
78 KOG4308 LRR-containing protein 90.1 0.0028 6.2E-08 68.0 -11.3 191 97-288 92-305 (478)
79 smart00370 LRR Leucine-rich re 86.6 0.67 1.5E-05 27.5 2.3 14 500-513 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 86.6 0.67 1.5E-05 27.5 2.3 14 500-513 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 86.1 0.74 1.6E-05 27.3 2.3 17 248-265 2-18 (26)
82 smart00370 LRR Leucine-rich re 86.1 0.74 1.6E-05 27.3 2.3 17 248-265 2-18 (26)
83 PF13516 LRR_6: Leucine Rich r 82.6 0.53 1.2E-05 27.3 0.6 21 388-408 2-22 (24)
84 TIGR00864 PCC polycystin catio 78.9 1.1 2.5E-05 56.8 2.1 47 506-552 1-47 (2740)
85 KOG3864 Uncharacterized conser 78.0 0.3 6.6E-06 45.2 -2.3 82 454-535 103-187 (221)
86 PF15102 TMEM154: TMEM154 prot 74.6 2.7 5.9E-05 36.8 2.7 30 593-622 59-89 (146)
87 KOG3864 Uncharacterized conser 69.2 0.83 1.8E-05 42.5 -1.7 36 297-332 101-136 (221)
88 smart00365 LRR_SD22 Leucine-ri 68.0 4.6 0.0001 24.1 1.9 14 500-513 2-15 (26)
89 smart00364 LRR_BAC Leucine-ric 67.5 3.7 8.1E-05 24.4 1.4 12 478-489 4-15 (26)
90 PF04478 Mid2: Mid2 like cell 66.4 3 6.5E-05 36.7 1.2 22 592-613 49-70 (154)
91 smart00368 LRR_RI Leucine rich 60.9 7.1 0.00015 23.6 1.8 14 500-513 2-15 (28)
92 PF08693 SKG6: Transmembrane a 54.9 14 0.0003 24.6 2.4 25 593-617 13-37 (40)
93 KOG4242 Predicted myosin-I-bin 52.1 98 0.0021 33.0 9.3 21 141-161 165-185 (553)
94 PF01102 Glycophorin_A: Glycop 50.4 4.3 9.2E-05 34.7 -0.5 24 593-616 65-88 (122)
95 KOG3763 mRNA export factor TAP 44.3 15 0.00032 39.7 2.2 64 221-287 216-284 (585)
96 PTZ00382 Variant-specific surf 43.0 15 0.00032 30.1 1.5 19 593-611 67-85 (96)
97 PF07204 Orthoreo_P10: Orthore 42.7 13 0.00029 29.6 1.2 35 591-625 41-75 (98)
98 KOG4242 Predicted myosin-I-bin 39.7 85 0.0018 33.5 6.7 87 248-334 354-453 (553)
99 PF07327 Neuroparsin: Neuropar 38.0 44 0.00096 26.9 3.4 32 1-32 1-32 (103)
100 PTZ00370 STEVOR; Provisional 37.0 14 0.00031 36.2 0.7 21 605-625 269-289 (296)
101 KOG3763 mRNA export factor TAP 35.7 18 0.00038 39.1 1.1 63 450-514 216-284 (585)
102 TIGR01478 STEVOR variant surfa 34.8 14 0.0003 36.3 0.2 19 606-624 274-292 (295)
103 PF08114 PMP1_2: ATPase proteo 33.8 30 0.00064 23.0 1.5 10 612-621 27-36 (43)
104 PF08374 Protocadherin: Protoc 27.6 49 0.0011 31.1 2.5 22 591-612 37-58 (221)
105 PF10725 DUF2517: Protein of u 26.8 83 0.0018 23.0 2.9 25 608-632 23-47 (63)
106 smart00367 LRR_CC Leucine-rich 25.3 46 0.00099 19.5 1.3 11 165-175 2-12 (26)
107 PF02950 Conotoxin: Conotoxin; 24.5 29 0.00063 26.7 0.4 9 56-64 59-67 (75)
108 PF02439 Adeno_E3_CR2: Adenovi 23.9 32 0.0007 22.5 0.4 8 598-605 9-16 (38)
109 PF14575 EphA2_TM: Ephrin type 23.7 29 0.00064 26.9 0.3 20 599-618 8-27 (75)
110 PF12191 stn_TNFRSF12A: Tumour 22.7 63 0.0014 27.6 2.0 6 538-543 34-39 (129)
111 PF12606 RELT: Tumour necrosis 21.1 45 0.00098 23.5 0.7 18 611-628 18-35 (50)
112 PRK00523 hypothetical protein; 20.4 33 0.00072 26.1 -0.0 26 599-624 10-35 (72)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-62 Score=574.73 Aligned_cols=518 Identities=32% Similarity=0.481 Sum_probs=358.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCC------ccccccCCCCCcc
Q 006657 32 IQSERKALLRFKQDLKDPANRLASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEP------FWLEDYDDETSKL 104 (636)
Q Consensus 32 ~~~~~~~Ll~~k~~~~~~~~~l~~W~-~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l 104 (636)
.++|+.||++||+++.+|.+.+.+|+ ..+||.|.||+|++ .++|++|+|+++.+.+..+ ..++.+++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 35799999999999988888889998 67899999999985 5799999999988877655 3567788888888
Q ss_pred eeecCcccc-CCCCCCEEeCCCCCCCCC---------------------CCchhhcCCCCCCEEEccCCccCCCCCccCc
Q 006657 105 IGKINPSLL-DLKHLVYLDLSNNNFENN---------------------QIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162 (636)
Q Consensus 105 ~g~i~~~l~-~l~~L~~L~Ls~n~l~~~---------------------~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 162 (636)
.|.+|..+. .+++|++|+|++|.+++. .+|..++++++|++|++++|.+.+.+|..++
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 888887765 777777777777766543 1444444555555555555555545555555
Q ss_pred CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCc
Q 006657 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL 242 (636)
Q Consensus 163 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 242 (636)
++++|++|++++|.+.... ...+.++++|++|++++|.+++. .+..++.+++|++|++++|.+++.+| .
T Consensus 186 ~l~~L~~L~L~~n~l~~~~--------p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p-~ 254 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQI--------PRELGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYNNLTGPIP-S 254 (968)
T ss_pred hCcCCCeeeccCCCCcCcC--------ChHHcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCceeccccC-h
Confidence 5555555555555443211 12245566666666666665543 12245566666666666666666565 4
Q ss_pred cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCC
Q 006657 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTR 322 (636)
Q Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 322 (636)
.++++++|+.|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 56666666666666666665555 55666666666666666666666666666666666666666666666666666666
Q ss_pred CCEEEccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEcc
Q 006657 323 LEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLS 396 (636)
Q Consensus 323 L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 396 (636)
|++|++++|.+.+.+|. .|+.|++++|.+.|.+|.++.. +.+|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 66666666666665553 4566666666666666665553 5556666666666666666666666666666666
Q ss_pred CccCccccchhhhhhhhhccccCC-----Cc------------------------ccccccc--ceeeceEEEEeecccc
Q 006657 397 HNNFSGTLPRCINNLTAMMNQENS-----ME------------------------TDKEYDT--FTIELSILVVMKGREL 445 (636)
Q Consensus 397 ~N~l~~~~p~~l~~l~~L~~~~~~-----~~------------------------~~~~~~~--~~~~~~~~~~~~~~~~ 445 (636)
+|++++.+|..+.+++.|+.++.+ +. .+..... +....-....+.+..+
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC
Confidence 666666666555555555444321 11 1110000 0000000112344555
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
.....++.|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..++.+++|+.|||++|+++|.+|..+..+++
T Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 66677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 526 LSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
|+++++++|+++|.+|..+++..+....+.|| .+||.+
T Consensus 573 L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999 899854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9e-48 Score=454.10 Aligned_cols=450 Identities=33% Similarity=0.468 Sum_probs=305.4
Q ss_pred cccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhc-CCCCCCEEEccCCccCCCCCccCcCCCCCCeEe
Q 006657 93 WLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLG-FMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLD 171 (636)
Q Consensus 93 ~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 171 (636)
.++.+++++|.+.|.+|+++..+++|++|+|++|.+++. +|..+. .+++|++|++++|++++.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 456788999999999999999999999999999999875 887654 899999999999999888775 4678888888
Q ss_pred ccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCc
Q 006657 172 LSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY 251 (636)
Q Consensus 172 Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 251 (636)
+++|.+.... + ..++++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+.+| ..++++++|+
T Consensus 147 Ls~n~~~~~~-p-------~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 215 (968)
T PLN00113 147 LSNNMLSGEI-P-------NDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLK 215 (968)
T ss_pred CcCCcccccC-C-------hHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCcc
Confidence 8888775321 1 12566677777777777665431 1245566666666666666666666 4566666666
Q ss_pred EEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCc
Q 006657 252 TLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331 (636)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 331 (636)
.|++++|.+.+.+| ..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 216 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 66666666665555 55666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccc
Q 006657 332 RLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405 (636)
Q Consensus 332 ~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 405 (636)
.+.+.+|. .|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 66655543 4555566666655555555543 5555555555555555555555555555555555555555555
Q ss_pred hhh------------------------hhhhhhccccC-----CCccccccccceeeceE--------------------
Q 006657 406 RCI------------------------NNLTAMMNQEN-----SMETDKEYDTFTIELSI-------------------- 436 (636)
Q Consensus 406 ~~l------------------------~~l~~L~~~~~-----~~~~~~~~~~~~~~~~~-------------------- 436 (636)
..+ ..+++|+.+.. .+..+.....+.....+
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 444 44444443321 11111111100000000
Q ss_pred --EE-----EeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCC
Q 006657 437 --LV-----VMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509 (636)
Q Consensus 437 --~~-----~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~ 509 (636)
.. .+.+..+... ..+.|+.||+++|++++.+|..+.++++|++|+|++|++++.+|..+..+++|++|+|++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 00 0111122211 235688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCCCC
Q 006657 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGNNL 559 (636)
Q Consensus 510 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l 559 (636)
|+++|.+|..+..+++|++|++++|+++|.+|.. ..+..+....+.+|.+
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 9999999999999999999999999999999964 2234444445556633
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=322.64 Aligned_cols=424 Identities=24% Similarity=0.293 Sum_probs=250.6
Q ss_pred cccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCC
Q 006657 62 CTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMG 141 (636)
Q Consensus 62 c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~ 141 (636)
|.-.-.-|+. .++.++|-+ .+.|..|...+.+++++|.+...-+..+-++++|+.+++.+|.++ .||.+.+...
T Consensus 52 c~~~lldcs~--~~lea~~~~--~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sg 125 (873)
T KOG4194|consen 52 CNTRLLDCSD--RELEAIDKS--RLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESG 125 (873)
T ss_pred CCceeeecCc--ccccccccc--ccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh--hccccccccc
Confidence 4434445542 345554433 234444444455555555555544445555556666666655555 4555555555
Q ss_pred CCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCC
Q 006657 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 221 (636)
Q Consensus 142 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 221 (636)
+|+.|+|.+|.|+..-.+++..++.|+.||||.|.+..++.+. +..-.++++|+|++|.++.... ..+..
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s--------fp~~~ni~~L~La~N~It~l~~--~~F~~ 195 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS--------FPAKVNIKKLNLASNRITTLET--GHFDS 195 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC--------CCCCCCceEEeecccccccccc--ccccc
Confidence 5566666655555444455555555556666655555544433 3333455555555555555421 12334
Q ss_pred CCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCE
Q 006657 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEH 301 (636)
Q Consensus 222 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 301 (636)
+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|++. .+.-..|.++++|+.|.|..|.+...-...|-.+.++++
T Consensus 196 lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 445555555555555 444445555555555555555553 221234555555555555555555444444555555555
Q ss_pred EEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCc
Q 006657 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIP 381 (636)
Q Consensus 302 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p 381 (636)
|+|+.|+++..--.++.++++|+.|++++|.+... .+..|- -.++|+.|+|+.|+++..-+
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-----------------h~d~Ws--ftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-----------------HIDSWS--FTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhhee-----------------ecchhh--hcccceeEeccccccccCCh
Confidence 55555555544444555555555555555554411 112222 24566666666666665555
Q ss_pred cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcC
Q 006657 382 AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461 (636)
Q Consensus 382 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 461 (636)
..|..+..|++|.|++|+++..-...|.. +++|+.|||++
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------------------------------------lssL~~LdLr~ 374 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVG----------------------------------------LSSLHKLDLRS 374 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHH----------------------------------------hhhhhhhcCcC
Confidence 55666666666666666655322223333 34488899999
Q ss_pred CccCccCCc---ccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc
Q 006657 462 NNLSGDIPE---EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 462 N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
|.+++.|.+ .|..+++|+.|+|.+|++....-.+|..+..||+|||.+|.+...-|..|..+ .|++|-+..-.+-|
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 999877654 47789999999999999996666789999999999999999998889999988 89999999888888
Q ss_pred cCCCCCccCCccccccCCC--CCCCCC
Q 006657 539 KIPLGTQLQGFNASCFAGN--NLCGAP 563 (636)
Q Consensus 539 ~ip~~~~~~~~~~~~~~~n--~lc~~~ 563 (636)
.|...|..+|+....+..- .-|+.|
T Consensus 454 DCql~Wl~qWl~~~~lq~sv~a~CayP 480 (873)
T KOG4194|consen 454 DCQLKWLAQWLYRRKLQSSVIAKCAYP 480 (873)
T ss_pred eccHHHHHHHHHhcccccceeeeccCC
Confidence 8887777777665555433 457655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-36 Score=303.96 Aligned_cols=353 Identities=27% Similarity=0.266 Sum_probs=303.9
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGL 196 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l 196 (636)
.-+.||+++|.+... -+.+|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.+.++... .+..+
T Consensus 79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se--------~L~~l 148 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSE--------ELSAL 148 (873)
T ss_pred ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHH--------HHHhH
Confidence 557799999999976 6788999999999999999998 8898777777899999999988775433 37788
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCc
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLV 276 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 276 (636)
+.|+.||||.|.++.++.- .+..-.++++|+|++|.++. +....|.++.+|..|.|+.|+++ .+|+..|.++++|+
T Consensus 149 ~alrslDLSrN~is~i~~~--sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKP--SFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLE 224 (873)
T ss_pred hhhhhhhhhhchhhcccCC--CCCCCCCceEEeeccccccc-cccccccccchheeeecccCccc-ccCHHHhhhcchhh
Confidence 9999999999999988531 33444689999999999984 44478999999999999999998 88989999999999
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccc
Q 006657 277 FLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356 (636)
Q Consensus 277 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip 356 (636)
.|+|..|++...---.|.++++|+.|.|..|.+.......|..+.++++|+|+.|+++. .--
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------vn~ 286 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------VNE 286 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------hhc
Confidence 99999999974445568999999999999999988778889999999999999998872 112
Q ss_pred hHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceE
Q 006657 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSI 436 (636)
Q Consensus 357 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 436 (636)
.|++. ++.|+.|+|+.|.+...-+..+...++|+.|||++|+++..-+..|..+..
T Consensus 287 g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~----------------------- 342 (873)
T KOG4194|consen 287 GWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ----------------------- 342 (873)
T ss_pred ccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-----------------------
Confidence 45554 999999999999999888899999999999999999999777777777665
Q ss_pred EEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCc---cccCCCCCCEEeCCCCCCC
Q 006657 437 LVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPE---NVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 437 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~---~~~~l~~L~~L~Ls~N~l~ 513 (636)
|++|+|++|+++..--..|..+++|++|||++|.++..|.+ .|..+++|+.|+|.+|++.
T Consensus 343 -----------------Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 343 -----------------LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred -----------------hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 78899999999977777899999999999999999876654 4778999999999999999
Q ss_pred ccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
...-..|..+..|++|||.+|.+-..=|.
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeeccc
Confidence 66667899999999999999998754443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.5e-38 Score=303.74 Aligned_cols=385 Identities=29% Similarity=0.414 Sum_probs=276.0
Q ss_pred ccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEecc
Q 006657 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 173 (636)
+.++...+|.++ +.|++++.+..++.|+.++|+++ .+|..++.+.+|+.|+.++|.+. .+|++++.+..|+.++..
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 344444455554 56777777777777777777777 57777777777777777777777 667777777777777777
Q ss_pred CCCCCCccccccccccc--------------ccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCC
Q 006657 174 IDTHNPISFSFLYLENF--------------SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSL 239 (636)
Q Consensus 174 ~n~~~~~~~~~~~~~~l--------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 239 (636)
+|++.+.|........+ +..-+++.|++||...|.+...|. .++.+.+|+-|+|..|.+. .+
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~---~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP---ELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh---hhcchhhhHHHHhhhcccc-cC
Confidence 77776655332111000 112346778888888888777765 7788888888899888887 56
Q ss_pred CCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhC
Q 006657 240 PELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHK 319 (636)
Q Consensus 240 p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 319 (636)
| .|.++..|++|+++.|++. .+|.+....++++.+||+..|+++ ..|+++..+.+|++||+++|.++ .+|.++++
T Consensus 222 P--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 222 P--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred C--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 6 5888888999999999886 667556668999999999999998 78999999999999999999998 56778999
Q ss_pred CCCCCEEEccCccccccc-------------------------------------Cc----------cceEEEccCCCCc
Q 006657 320 FTRLEYLSLRENRLQGMI-------------------------------------SS----------VLVVFDIGENGFS 352 (636)
Q Consensus 320 l~~L~~L~L~~n~l~~~~-------------------------------------p~----------~L~~L~l~~n~l~ 352 (636)
+ .|+.|-+.+|++...- |. +.+.|+++.-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 8 8999999999874210 00 3455566655555
Q ss_pred cccchHHHHhhhc---CceEecCCCcCc-----------------------ccCccccCCCCCCCEEEccCccCccccch
Q 006657 353 GNIPAWIGEKLLR---NLILRLRSNKFD-----------------------GQIPAELCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 353 g~ip~~~~~~~~~---L~~L~L~~n~l~-----------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
.+|+.++. ..+ ....+++.|++. +.+|..++.+++|..|++++|.+. .+|.
T Consensus 376 -~VPdEVfe-a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 376 -LVPDEVFE-AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred -cCCHHHHH-HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 56665554 222 445555555554 234444455555555555555444 4444
Q ss_pred hhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCc
Q 006657 407 CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHN 486 (636)
Q Consensus 407 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N 486 (636)
.++.+. .|+.||+|.|+|. .+|..+..+..++.+-.++|
T Consensus 453 e~~~lv----------------------------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 453 EMGSLV----------------------------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNN 491 (565)
T ss_pred hhhhhh----------------------------------------hhheecccccccc-cchHHHhhHHHHHHHHhccc
Confidence 444333 2778888888887 77887777788888877888
Q ss_pred cCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCc
Q 006657 487 FLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 487 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
++...-|+.+.+|.+|..|||.+|.+. .+|+.++++++|++|++++|+|.
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 887555555889999999999999998 78888999999999999999987
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=3.5e-35 Score=299.08 Aligned_cols=354 Identities=23% Similarity=0.302 Sum_probs=180.8
Q ss_pred cce-eecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 103 KLI-GKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 103 ~l~-g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
.++ +..|..+.++++++-|.|...++. .+|+.++.+.+|++|.++.|++. .+-..++.++.|+.+++..|++....
T Consensus 18 DFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 18 DFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred cCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCC
Confidence 444 344555555555555555555555 45555555555555555555555 33444555555555555555554433
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
+| ..+.++..|..||||+|++...|. .+..-+++-.|+|++|++. .||...+.+++.|-.||||+|.+.
T Consensus 95 iP-------~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 95 IP-------TDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred CC-------chhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 33 114445555555555555554443 3444444555555555554 444444444455555555555543
Q ss_pred CCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCC-cccchhhhCCCCCCEEEccCcccccccCcc
Q 006657 262 NTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI-SSIPTWLHKFTRLEYLSLRENRLQGMISSV 340 (636)
Q Consensus 262 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 340 (636)
.+| ..+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+++|
T Consensus 164 -~LP-PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS----------- 230 (1255)
T KOG0444|consen 164 -MLP-PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS----------- 230 (1255)
T ss_pred -hcC-HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-----------
Confidence 333 33444444555555554443221122223344444444443322 2344444444444444444
Q ss_pred ceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC
Q 006657 341 LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420 (636)
Q Consensus 341 L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 420 (636)
.|.+. .+|..+.. +++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|.++..++.|+.+...
T Consensus 231 -------~N~Lp-~vPecly~-l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 231 -------ENNLP-IVPECLYK-LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred -------ccCCC-cchHHHhh-hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence 44444 67777775 888888888888887 34445556677888888888887 788888777775432110
Q ss_pred CccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC
Q 006657 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR 500 (636)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 500 (636)
... .. -..+|+-++.+..|+++..++|.+. ..|+.+..|..|+.|.|++|++. .+|+.+.-++
T Consensus 300 ~Nk--------------L~-FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 300 NNK--------------LT-FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred cCc--------------cc-ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 000 00 0012222333333444455555544 44555555555555555555554 4455555555
Q ss_pred CCCEEeCCCCC
Q 006657 501 SLESIDFSGNL 511 (636)
Q Consensus 501 ~L~~L~Ls~N~ 511 (636)
.|+.||+..|.
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 55555555554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=4.7e-35 Score=298.15 Aligned_cols=348 Identities=26% Similarity=0.360 Sum_probs=261.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
+-|+..+-.|+++|.++|..+|.....|++++.|.|....+. .+|+.++.|.+|++|.+++|++...- ..
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh---------GE 73 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH---------GE 73 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh---------hh
Confidence 456778889999999998889999999999999999999998 89999999999999999999886542 22
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+..++.||.+++..|++.... +|..+..+..|+.|+|++|++. ..| ..+..-+++-+|+||+|+|. +||...|.++
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsG-iP~diF~l~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL 149 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSG-IPTDIFRLKDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIE-TIPNSLFINL 149 (1255)
T ss_pred hccchhhHHHhhhccccccCC-CCchhcccccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence 778899999999999886542 2337788899999999999997 677 57888888999999999997 8887888899
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~ 352 (636)
+.|-+|||++|++. .+|+.+..+..|++|+|++|.+.-..-..+..+++|+.|.+++.+-+-
T Consensus 150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl----------------- 211 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL----------------- 211 (1255)
T ss_pred HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-----------------
Confidence 99999999999997 788889999999999999998764333344456778888888876441
Q ss_pred cccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccccee
Q 006657 353 GNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432 (636)
Q Consensus 353 g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 432 (636)
..+|..+-. +.+|..++++.|.+. .+|..+.++++|+.|+||+|+++ .+.-..+...+
T Consensus 212 ~N~Ptsld~-l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~------------------- 269 (1255)
T KOG0444|consen 212 DNIPTSLDD-LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWEN------------------- 269 (1255)
T ss_pred hcCCCchhh-hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhh-------------------
Confidence 267887775 999999999999998 78999999999999999999998 44333333333
Q ss_pred eceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcC-CCCccccCCCCCCEEeCCCCC
Q 006657 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG-KIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
|++|++|.|+++ .+|..+..++.|+.|.+.+|+++- .||..++.+.+|+.+..++|.
T Consensus 270 ---------------------lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 270 ---------------------LETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred ---------------------hhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 444555555555 445555555555555555554442 244445555555555555544
Q ss_pred CCccCchhccCCCCCCeeeccCCcCc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
+. ..|..+..+..|+.|.|+.|++.
T Consensus 328 LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cc-cCchhhhhhHHHHHhccccccee
Confidence 44 44444444444555555544443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-34 Score=279.81 Aligned_cols=426 Identities=27% Similarity=0.363 Sum_probs=260.3
Q ss_pred cceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccc
Q 006657 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISF 182 (636)
Q Consensus 103 ~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 182 (636)
.+. .+.+.+.++..|.+|++++|++. ++|..++.+..++.|+++.|.++ .+|+.++.+.+|+.+++++|.+...+.
T Consensus 56 ~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 56 DLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred chh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc
Confidence 443 45566889999999999999998 68999999999999999999998 899999999999999999998877653
Q ss_pred ccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCC
Q 006657 183 SFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 262 (636)
Q Consensus 183 ~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 262 (636)
. ++.+..|+.++..+|+++..|. .+.++.+|..+++.+|++. ..|+..+ +++.|++||...|.+.
T Consensus 132 ~---------i~~~~~l~dl~~~~N~i~slp~---~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 132 S---------IGRLLDLEDLDATNNQISSLPE---DMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE- 196 (565)
T ss_pred h---------HHHHhhhhhhhccccccccCch---HHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-
Confidence 3 6667777777777777777654 4445555556666666555 2331222 2555555555555553
Q ss_pred CCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhh-CCCCCCEEEccCcccccccCc--
Q 006657 263 TLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH-KFTRLEYLSLRENRLQGMISS-- 339 (636)
Q Consensus 263 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~-- 339 (636)
.+| ..++.+.+|..|++.+|++. .+| +|.+++.|++|.++.|++. .+|.... .++++..||+++|++....-+
T Consensus 197 tlP-~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 197 TLP-PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred cCC-hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence 444 45555555555555555554 334 4555555555555555544 3333332 445555555555554422111
Q ss_pred ---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc-------------------------------------c
Q 006657 340 ---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG-------------------------------------Q 379 (636)
Q Consensus 340 ---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~-------------------------------------~ 379 (636)
+|..||+|+|.++ .+|..++. + .|+.|.+.+|.+.. .
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 2333333333333 23333332 2 33333333333210 0
Q ss_pred -Ccc---ccCCCCCCCEEEccCccCccccchhhhhhhh---hccccCC----Cccccccccc---eeeceEEEEeecccc
Q 006657 380 -IPA---ELCRLTSLHILDLSHNNFSGTLPRCINNLTA---MMNQENS----METDKEYDTF---TIELSILVVMKGREL 445 (636)
Q Consensus 380 -~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~ 445 (636)
.+. ....+.+.+.|++++-+++ .+|........ ....+.+ .++|...... ...........+-.+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~ 428 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVP 428 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccch
Confidence 000 0112223444555544444 33432211111 0000000 0011100000 000001112233445
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
.++..+++++.|+|++|-+. .+|.+++.+..|+.||+|+|++. .+|..+-.+..+|.+-.++|++....|+.+.++..
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 56667888999999999988 89999999999999999999998 88988888888899988999999777777999999
Q ss_pred CCeeeccCCcCcccCCCCCccCCccccccCCC
Q 006657 526 LSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 557 (636)
|++||+.+|.+....|.-+....+......||
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCC
Confidence 99999999999866666566776666666665
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=6.9e-31 Score=280.01 Aligned_cols=382 Identities=27% Similarity=0.365 Sum_probs=271.2
Q ss_pred EEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCC
Q 006657 76 VLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTG 155 (636)
Q Consensus 76 v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~ 155 (636)
..+||++++ ..+..|..+..+.+|+.|+++.|.+. ..|..+.++.+|++|.|.+|.+.
T Consensus 47 L~~l~lsnn-------------------~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~- 104 (1081)
T KOG0618|consen 47 LKSLDLSNN-------------------QISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ- 104 (1081)
T ss_pred eEEeecccc-------------------ccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-
Confidence 677888875 34566667777777777777777776 46677777777777777777666
Q ss_pred CCCccCcCCCCCCeEeccCCCCCCccccccccc-----------cc--------------------ccccCCCCCcE-EE
Q 006657 156 MIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLE-----------NF--------------------SWLSGLSLLKH-LD 203 (636)
Q Consensus 156 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~-----------~l--------------------~~l~~l~~L~~-L~ 203 (636)
..|.++..+.+|++||++.|.+...|....... .+ ........|++ |+
T Consensus 105 ~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ld 184 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLD 184 (1081)
T ss_pred cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeee
Confidence 667777777777777777777665543210000 00 00112223343 77
Q ss_pred ccCCCCCCCCChhhhhCCCC--------------------CCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCC
Q 006657 204 LTGVDLSTASDWFLVTNMLP--------------------SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 263 (636)
Q Consensus 204 Ls~n~l~~~~~~~~~~~~l~--------------------~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 263 (636)
|.+|.+... .+.+++ +|+.|+.+.|.++...+ -..-.+|+++++++|+++ .
T Consensus 185 Lr~N~~~~~-----dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~-~ 255 (1081)
T KOG0618|consen 185 LRYNEMEVL-----DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLS-N 255 (1081)
T ss_pred cccchhhhh-----hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc---ccccccceeeecchhhhh-c
Confidence 777776622 223333 45555555555542211 112257888888888887 5
Q ss_pred CChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc----
Q 006657 264 LVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS---- 339 (636)
Q Consensus 264 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---- 339 (636)
+| .|++.+.+|+.++..+|+++ .+|..+...++|+.|++..|.+. .+|....+++.|++|+|..|++....+.
T Consensus 256 lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 256 LP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred ch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhh
Confidence 66 88888888888888888885 77888888888888888888887 5566677788888899888888755433
Q ss_pred ---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch-hhhhhhhhc
Q 006657 340 ---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR-CINNLTAMM 415 (636)
Q Consensus 340 ---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~ 415 (636)
.+..+..+.|.+. ..|..-...+..|+.|.+.+|.++...-+.+-+.++|+.|+|++|++. .+|. .+.++..
T Consensus 333 ~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~-- 408 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEE-- 408 (1081)
T ss_pred hhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHH--
Confidence 3455555666665 444333334678889999999999888888889999999999999998 5555 3444443
Q ss_pred cccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCcc
Q 006657 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPEN 495 (636)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 495 (636)
|+.|+||+|+++ .+|..+.++..|++|...+|++. ..| .
T Consensus 409 --------------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 409 --------------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred --------------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 788999999999 88999999999999999999998 777 7
Q ss_pred ccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcC
Q 006657 496 VGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 536 (636)
+..+++|+.+|+|.|+++...-......++|++||+++|..
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 89999999999999999865433333348999999999973
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-29 Score=268.00 Aligned_cols=406 Identities=28% Similarity=0.371 Sum_probs=249.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
..-+|+.||+++|.+. .+|..+..+++|+.|+++.|.+. .+|.+.+++.+|++|.|..|.+...|.. +
T Consensus 43 ~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~---------~ 110 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPAS---------I 110 (1081)
T ss_pred heeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchh---------H
Confidence 3445889999999888 57888888889999999998887 7788888889999999998887665543 6
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
..+++|++|++++|.+...|. .+..++.++.+..++|..... ++... ++.+++..|.+.+.++ .....++
T Consensus 111 ~~lknl~~LdlS~N~f~~~Pl---~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l~~n~l~~~~~-~~i~~l~ 180 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGPIPL---VIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDLRLNVLGGSFL-IDIYNLT 180 (1081)
T ss_pred HhhhcccccccchhccCCCch---hHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhhhhhhcccchh-cchhhhh
Confidence 788888999999998888764 344455555555555521111 11111 4455555555544444 3333333
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc----cCccceEEEccCC
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM----ISSVLVVFDIGEN 349 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~L~~L~l~~n 349 (636)
. .|+|.+|.+. . ..+.++.+|+.+....|++.... -..++|+.|+.+.|.++.. .|..++.+|++.|
T Consensus 181 ~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 181 H--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN 251 (1081)
T ss_pred e--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccccccccceeeecchh
Confidence 3 3555555544 1 12344445555555555443211 1124455555555554422 2345555555555
Q ss_pred CCccccchHHHHhhhcCceEecCCCcCcc----------------------cCccccCCCCCCCEEEccCccCccccchh
Q 006657 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDG----------------------QIPAELCRLTSLHILDLSHNNFSGTLPRC 407 (636)
Q Consensus 350 ~l~g~ip~~~~~~~~~L~~L~L~~n~l~~----------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 407 (636)
+++ .+|.|+.. +.+|+.+...+|+++. .+|......++|++|||..|++. ..|+.
T Consensus 252 ~l~-~lp~wi~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~ 328 (1081)
T KOG0618|consen 252 NLS-NLPEWIGA-CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDN 328 (1081)
T ss_pred hhh-cchHHHHh-cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchH
Confidence 555 45555554 5555555555555431 45556666777778888888776 44442
Q ss_pred -hhhhhh-hccccCCC-ccc--cccccc-----eeeceEEEEeeccccccccccccccEEECcCCccCccCCc-cccccc
Q 006657 408 -INNLTA-MMNQENSM-ETD--KEYDTF-----TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE-EMTNLL 476 (636)
Q Consensus 408 -l~~l~~-L~~~~~~~-~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~-~~~~l~ 476 (636)
+.-... +..++.+. .++ ..+... .........+......-+..+++|+.|+|++|++. .+|+ .+.++.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle 407 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE 407 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchH
Confidence 222211 22222100 000 000000 00000111233334444556788999999999998 5554 578899
Q ss_pred CCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc-cCCCCCccCCccccccC
Q 006657 477 ALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG-KIPLGTQLQGFNASCFA 555 (636)
Q Consensus 477 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g-~ip~~~~~~~~~~~~~~ 555 (636)
.|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| ++..+++|+.+|+|.|+++- .+|.......+....+.
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 9999999999998 88899999999999999999998 667 78999999999999999974 44443333455555666
Q ss_pred CC
Q 006657 556 GN 557 (636)
Q Consensus 556 ~n 557 (636)
||
T Consensus 485 GN 486 (1081)
T KOG0618|consen 485 GN 486 (1081)
T ss_pred CC
Confidence 66
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.3e-23 Score=245.78 Aligned_cols=261 Identities=23% Similarity=0.267 Sum_probs=149.4
Q ss_pred cccCCCCCCEEeCCCCCCCC-----CCCchhhcCCC-CCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccc
Q 006657 111 SLLDLKHLVYLDLSNNNFEN-----NQIPVFLGFMG-SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSF 184 (636)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~-----~~ip~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 184 (636)
++..+++|+.|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++++|++...+.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~-- 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWD-- 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccccc--
Confidence 46667777777775543211 12555555553 5777777777665 666665 45777777777776654321
Q ss_pred ccccccccccCCCCCcEEEccCCC-CCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCC
Q 006657 185 LYLENFSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 263 (636)
Q Consensus 185 ~~~~~l~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 263 (636)
.+..+++|+.|+|+++. +...| .+..+++|+.|++++|.....+| ..+.++++|+.|++++|..-+.
T Consensus 629 -------~~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 629 -------GVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred -------ccccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCc
Confidence 14567777777777654 33334 25567777777777776666677 5677777777777777654445
Q ss_pred CChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceE
Q 006657 264 LVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 264 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
+| ..+ ++++|++|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|++|++.++..... +
T Consensus 697 Lp-~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l-~----- 763 (1153)
T PLN03210 697 LP-TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL-W----- 763 (1153)
T ss_pred cC-CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc-c-----
Confidence 55 322 5677777777777655555532 356777777777765 455443 456777776665332100 0
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
+.+. .++.......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 764 -----~~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 764 -----ERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred -----cccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 0000 11111111134555555555555555555555555555555555543334443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.1e-22 Score=237.54 Aligned_cols=340 Identities=23% Similarity=0.208 Sum_probs=231.1
Q ss_pred hhhcCCCCCCEEEccCCc------cCCCCCccCcCCC-CCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCC
Q 006657 135 VFLGFMGSLRHIDLSRAE------LTGMIPHQLGNLF-NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGV 207 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n 207 (636)
..|..|++|++|.+..+. +...+|..+..++ +|+.|++.++.+...|.. + ...+|++|++.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~---------f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN---------F-RPENLVKLQMQGS 621 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc---------C-CccCCcEEECcCc
Confidence 457778888888886653 2334666666664 588888887766554322 2 3567788888877
Q ss_pred CCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcc
Q 006657 208 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG 287 (636)
Q Consensus 208 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 287 (636)
.+...+. .+..+++|+.|+|+++...+.+| .+..+++|+.|++++|.....+| ..+.++++|++|++++|...+
T Consensus 622 ~l~~L~~---~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 622 KLEKLWD---GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccccc---ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcC
Confidence 7766543 45667777888877766555666 36667777777777766555666 667777777777777765444
Q ss_pred cCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCc
Q 006657 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL 367 (636)
Q Consensus 288 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~ 367 (636)
.+|..+ ++++|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-------------------~lP~~~--~l~~L~ 750 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-------------------EFPSNL--RLENLD 750 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-------------------cccccc--cccccc
Confidence 666554 6777777777777655455432 245666666666554 555544 267777
Q ss_pred eEecCCCcCc-------ccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEe
Q 006657 368 ILRLRSNKFD-------GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVM 440 (636)
Q Consensus 368 ~L~L~~n~l~-------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (636)
.|.+.++... ...+......++|+.|++++|...+.+|..++++++|+.+.......
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~---------------- 814 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN---------------- 814 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC----------------
Confidence 7777664321 11222233457899999999998889999999988887664311000
Q ss_pred eccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 441 KGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
-+..+... .+++|+.|++++|.....+|.. .++|++|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 00011111 4677999999998766566653 467899999999998 789899999999999999965444688888
Q ss_pred cCCCCCCeeeccCCcC
Q 006657 521 SSLTFLSHLNLSDNNL 536 (636)
Q Consensus 521 ~~l~~L~~L~ls~N~l 536 (636)
..+++|+.+++++|.-
T Consensus 890 ~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 890 SKLKHLETVDFSDCGA 905 (1153)
T ss_pred ccccCCCeeecCCCcc
Confidence 8899999999998863
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=6.7e-22 Score=218.46 Aligned_cols=62 Identities=31% Similarity=0.465 Sum_probs=30.2
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++.+|..+
T Consensus 404 L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 444555555554 23432 123444555555554 445555555555555555555555444443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.3e-21 Score=216.13 Aligned_cols=267 Identities=22% Similarity=0.245 Sum_probs=174.3
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccC
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSG 195 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 195 (636)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. .++|++|++++|+++.+|. .
T Consensus 201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsLP~------------l 260 (788)
T PRK15387 201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSLPV------------L 260 (788)
T ss_pred CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcccC------------c
Confidence 44667788888777 4676664 47788888888777 45542 4677777777777765431 1
Q ss_pred CCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 196 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 196 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
.++|++|++++|.++..+.. .++|+.|++++|+++ .+|. ..++|+.|++++|+++ .+| .. ..+|
T Consensus 261 p~sL~~L~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~-~Lp-~l---p~~L 324 (788)
T PRK15387 261 PPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA-SLP-AL---PSEL 324 (788)
T ss_pred ccccceeeccCCchhhhhhc------hhhcCEEECcCCccc-cccc----cccccceeECCCCccc-cCC-CC---cccc
Confidence 24667777777776655432 245666777777665 3441 2356666677666665 333 21 2345
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
+.|++++|++++ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|+++ .+
T Consensus 325 ~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-------------------~L 377 (788)
T PRK15387 325 CKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-------------------SL 377 (788)
T ss_pred cccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-------------------cC
Confidence 666666666653 4421 1356666666666653 3322 134555555555544 45
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeece
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELS 435 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 435 (636)
|.. ..+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|....
T Consensus 378 P~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~~-------------------------- 422 (788)
T PRK15387 378 PAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLPS-------------------------- 422 (788)
T ss_pred ccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcchh--------------------------
Confidence 542 3568899999999884 5643 357999999999998 4664321
Q ss_pred EEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccC
Q 006657 436 ILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA 498 (636)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 498 (636)
.|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus 423 -----------------~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 423 -----------------GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -----------------hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 2667999999998 78999999999999999999999988877643
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-23 Score=203.37 Aligned_cols=398 Identities=20% Similarity=0.176 Sum_probs=222.9
Q ss_pred CCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccC-CccCCCCCccCcCCCCCCeEeccCCC
Q 006657 98 DDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSR-AELTGMIPHQLGNLFNLQYLDLSIDT 176 (636)
Q Consensus 98 ~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~ 176 (636)
.+..|.++...|.+|..+++||.||||+|.|+.. -|..|..+++|..|-+.+ |+|+......|++|..|+.|.+.-|+
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 3334455544455667777777777777777765 666676677666665554 66664444456667777777776666
Q ss_pred CCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCC------------CCCCccc
Q 006657 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN------------SLPELPI 244 (636)
Q Consensus 177 ~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~p~~~~ 244 (636)
+...... .+..+++|..|.+.+|.+..++.- .+..+..++.+.+..|.+.. ..| ..+
T Consensus 152 i~Cir~~--------al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~-iet 220 (498)
T KOG4237|consen 152 INCIRQD--------ALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP-IET 220 (498)
T ss_pred hcchhHH--------HHHHhhhcchhcccchhhhhhccc--cccchhccchHhhhcCccccccccchhhhHHhhch-hhc
Confidence 5544322 255666666666666666555321 34445566666665554221 011 112
Q ss_pred cCCCCCcEEEcccCCCCCCCChhhhc-CCCCCcEEEccCCcCcccCCc-cccCCCCCCEEEccCCcCCcccchhhhCCCC
Q 006657 245 ANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPD-GLQNLTSLEHLDLRSNNFISSIPTWLHKFTR 322 (636)
Q Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 322 (636)
+......-..+.+.++. .+.+..|. .+..+..=..+.+...+..|. .|..+++|+.|++++|++++.-+.+|.+...
T Consensus 221 sgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred ccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 22222222223333332 12212221 111121111222223334443 4788999999999999999888999999999
Q ss_pred CCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc
Q 006657 323 LEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 323 L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 402 (636)
+++|.|..|++. .+...++..+..|+.|+|.+|+++..-|..|..+.+|.+|.+-.|.+--
T Consensus 300 l~eL~L~~N~l~-------------------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 300 LQELYLTRNKLE-------------------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhhhhcCcchHH-------------------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 999999999887 5666666678999999999999998889999999999999998887641
Q ss_pred cc-chhhhhhhhhcc-ccC-CCccccccccceeeceEEEEeeccccccc---------ccccccc-EEECcCCccCccCC
Q 006657 403 TL-PRCINNLTAMMN-QEN-SMETDKEYDTFTIELSILVVMKGRELAYN---------TMLKLVR-CMDLSGNNLSGDIP 469 (636)
Q Consensus 403 ~~-p~~l~~l~~L~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~L~-~L~Ls~N~l~g~~p 469 (636)
.- -.+++..-.-+. ..+ .-..|.....+.++..-.-..+-..+... ..++.+. +..-|+..+. .+|
T Consensus 361 nC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp 439 (498)
T KOG4237|consen 361 NCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLP 439 (498)
T ss_pred ccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcC
Confidence 10 011111100000 000 00000000000000000000000000000 0111121 2233444433 333
Q ss_pred cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 470 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
..+ -..-..|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.++++|.+|-++||
T Consensus 440 ~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 322 123456788888888 77776 66778 8899999888666677888888888888887
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=2.1e-20 Score=208.05 Aligned_cols=265 Identities=19% Similarity=0.216 Sum_probs=149.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCC----CC-CCCCccccc----------------EEeCCCCCcEEEEEcCCCCC
Q 006657 28 YIGCIQSERKALLRFKQDLKDPANRLAS----WS-DGNCCTWAG----------------VVCNDSTGRVLELRLGNPFL 86 (636)
Q Consensus 28 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~----W~-~~~~c~w~g----------------v~C~~~~~~v~~L~L~~~~l 86 (636)
+.+-.++|.+.+++..+.+..| +...+ |+ +.++|.-+. |.|.+ +.|+.+..-+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p-~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~ 133 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFP-AYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQ 133 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCC-chhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Ccccccccccccc
Confidence 3455678999999999999766 33444 87 567886444 66643 5566665544211
Q ss_pred CCCC--CccccccCC-----CCCcceee----------cCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEcc
Q 006657 87 HDDE--PFWLEDYDD-----ETSKLIGK----------INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLS 149 (636)
Q Consensus 87 ~~~~--~~~l~~~~~-----~~~~l~g~----------i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~ 149 (636)
.... +-.....+. ..+.-.+. +... -..+...|+++++.++ .+|..+. ++|+.|+++
T Consensus 134 ~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~C--l~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 134 ASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDC--LKNNKTELRLKILGLT--TIPACIP--EQITTLILD 207 (754)
T ss_pred cccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhh--cccCceEEEeCCCCcC--cCCcccc--cCCcEEEec
Confidence 1100 000000000 00000000 1111 1245678888888887 4676553 578888888
Q ss_pred CCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEE
Q 006657 150 RAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229 (636)
Q Consensus 150 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 229 (636)
+|.++ .+|..+. ++|++|++++|.+..+|.. + .++|+.|++++|.+...|.. + .++|+.|+
T Consensus 208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~---------l--~~~L~~L~Ls~N~L~~LP~~---l--~s~L~~L~ 268 (754)
T PRK15370 208 NNELK-SLPENLQ--GNIKTLYANSNQLTSIPAT---------L--PDTIQEMELSINRITELPER---L--PSALQSLD 268 (754)
T ss_pred CCCCC-cCChhhc--cCCCEEECCCCccccCChh---------h--hccccEEECcCCccCcCChh---H--hCCCCEEE
Confidence 88887 5666554 4788888888877654321 1 13577777777777765542 2 24677777
Q ss_pred eecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcC
Q 006657 230 LSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309 (636)
Q Consensus 230 L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 309 (636)
+++|+++ .+|. .+. ++|+.|++++|+++ .+| ..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+
T Consensus 269 Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt-~LP-~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L 337 (754)
T PRK15370 269 LFHNKIS-CLPE-NLP--EELRYLSVYDNSIR-TLP-AHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENAL 337 (754)
T ss_pred CcCCccC-cccc-ccC--CCCcEEECCCCccc-cCc-ccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcc
Confidence 7777776 4552 222 36777777777665 344 2221 356666666666663 443332 4666666666666
Q ss_pred CcccchhhhCCCCCCEEEccCcccc
Q 006657 310 ISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 310 ~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
++ +|..+. ++|+.|++++|+++
T Consensus 338 t~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 338 TS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred cc-CChhhc--CcccEEECCCCCCC
Confidence 53 444332 45556666555554
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=2e-22 Score=196.86 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=104.9
Q ss_pred ccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCC
Q 006657 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527 (636)
Q Consensus 448 ~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 527 (636)
++.+++|+.|+|++|++++.-+.+|..+..++.|.|..|++...-...|.+++.|+.|+|.+|+|+..-|..|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 45688899999999999999999999999999999999999877777899999999999999999999999999999999
Q ss_pred eeeccCCcCcccCCCCCccCCccccccCCCCCCCCC
Q 006657 528 HLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAP 563 (636)
Q Consensus 528 ~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~~~ 563 (636)
+|++-.|++.|.+-..|.-.|+......||.-|+.|
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 999999999999988888788877776677667654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.4e-19 Score=197.49 Aligned_cols=246 Identities=26% Similarity=0.403 Sum_probs=124.6
Q ss_pred CCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE
Q 006657 198 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 277 (636)
+...|+++++.++..|. .+ .++|+.|++++|.++ .+|. .+ .++|+.|++++|+++ .+| ..+. .+|+.
T Consensus 179 ~~~~L~L~~~~LtsLP~---~I--p~~L~~L~Ls~N~Lt-sLP~-~l--~~nL~~L~Ls~N~Lt-sLP-~~l~--~~L~~ 245 (754)
T PRK15370 179 NKTELRLKILGLTTIPA---CI--PEQITTLILDNNELK-SLPE-NL--QGNIKTLYANSNQLT-SIP-ATLP--DTIQE 245 (754)
T ss_pred CceEEEeCCCCcCcCCc---cc--ccCCcEEEecCCCCC-cCCh-hh--ccCCCEEECCCCccc-cCC-hhhh--ccccE
Confidence 34556666655555543 11 135666666666665 3442 22 135666666666665 444 2222 34666
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccch
Q 006657 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~ 357 (636)
|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|.
T Consensus 246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-------------------LP~ 300 (754)
T PRK15370 246 MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-------------------LPA 300 (754)
T ss_pred EECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-------------------Ccc
Confidence 666666665 4454443 35666666666665 3444332 356666666665552 232
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
.+. .+|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|..+.
T Consensus 301 ~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~---------------------------- 345 (754)
T PRK15370 301 HLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP---------------------------- 345 (754)
T ss_pred cch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc----------------------------
Confidence 221 234455555555552 333222 355556666665552 333221
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+.|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+|..+. .+|+.|++++|+++ .+|
T Consensus 346 --------------~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 346 --------------PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred --------------CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCc
Confidence 12555666666665 3444332 45666666666665 3444443 24666666666665 333
Q ss_pred hhc----cCCCCCCeeeccCCcCc
Q 006657 518 QSI----SSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 518 ~~l----~~l~~L~~L~ls~N~l~ 537 (636)
..+ ..++.+..+++.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 322 23355566666666655
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.5e-19 Score=184.92 Aligned_cols=283 Identities=25% Similarity=0.269 Sum_probs=175.2
Q ss_pred EEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC----CCCccccCCCCCcEEEcccCCCCC--C---CChhhhcC
Q 006657 201 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS----LPELPIANFSSLYTLDLSYNEFDN--T---LVPSWLFG 271 (636)
Q Consensus 201 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~l~~--~---~~~~~l~~ 271 (636)
.|+|..+.+++. .|...+..+++|++|+++++.++.. ++ ..+...+++++++++++.+.+ . ..+..+..
T Consensus 2 ~l~L~~~~l~~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTE-RATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCccccc-chHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 567777777643 2334455667788888888887542 23 235566778888888877652 0 01135566
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCC---CCEEEccCCcCCc----ccchhhhCC-CCCCEEEccCcccccccCccceE
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTS---LEHLDLRSNNFIS----SIPTWLHKF-TRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
+++|++|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|++|++++|.+++...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----- 154 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC----- 154 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-----
Confidence 777888888877776555555544444 7778887777763 222334455 666677666666552110
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcc----cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccC
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG----QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~ 419 (636)
..++..+. .+.+|++|++++|.+++ .++..+...++|+.|++++|.+++.....+...
T Consensus 155 ---------~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-------- 216 (319)
T cd00116 155 ---------EALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-------- 216 (319)
T ss_pred ---------HHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH--------
Confidence 01222222 24578888888888774 233445566788888888888764433322211
Q ss_pred CCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCccccc-----ccCCCeEeCCCccCcC----
Q 006657 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN-----LLALQSLNLSHNFLAG---- 490 (636)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~~---- 490 (636)
...+++|++|++++|.+++.....+.. .+.|++|++++|.+++
T Consensus 217 ----------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 217 ----------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred ----------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 112345788888888887533333322 3688888888888862
Q ss_pred CCCccccCCCCCCEEeCCCCCCCcc----CchhccCC-CCCCeeeccCCcC
Q 006657 491 KIPENVGAMRSLESIDFSGNLLSGR----IPQSISSL-TFLSHLNLSDNNL 536 (636)
Q Consensus 491 ~ip~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 536 (636)
.+...+..+++|+++|+++|.++.. +...+... +.|+++++.+|++
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2344556667888888888888854 44445555 6788888888865
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.1e-18 Score=180.12 Aligned_cols=285 Identities=24% Similarity=0.238 Sum_probs=199.5
Q ss_pred eEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCC------CCC
Q 006657 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHN------SLP 240 (636)
Q Consensus 169 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~------~~p 240 (636)
.|+|+.+.+...... ..+..+++|++|+++++.++.. ..++..+...+++++++++++.+.+ .++
T Consensus 2 ~l~L~~~~l~~~~~~-------~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~ 74 (319)
T cd00116 2 QLSLKGELLKTERAT-------ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL 74 (319)
T ss_pred ccccccCcccccchH-------HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH
Confidence 467777666533221 2356677899999999998764 2344466778899999999998863 122
Q ss_pred CccccCCCCCcEEEcccCCCCCCCChhhhcCCCC---CcEEEccCCcCcc----cCCccccCC-CCCCEEEccCCcCCcc
Q 006657 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH---LVFLDLGFNSFGG----PIPDGLQNL-TSLEHLDLRSNNFISS 312 (636)
Q Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~ 312 (636)
..+..+++|+.|++++|.+.+..+ ..+..+.. |++|++++|++++ .+...+..+ ++|++|++++|.+++.
T Consensus 75 -~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 75 -QGLTKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred -HHHHhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 346678899999999999975444 55555555 9999999999873 233445666 8999999999999843
Q ss_pred ----cchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc----Ccccc
Q 006657 313 ----IPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ----IPAEL 384 (636)
Q Consensus 313 ----~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~----~p~~l 384 (636)
++..+..+++|++|++++|.+++... ..++..+.. .++|+.|++++|.+++. ++..+
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGI--------------RALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHH--------------HHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHh
Confidence 34456677889999999888763200 012222222 45889999999888743 34456
Q ss_pred CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCcc
Q 006657 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 464 (636)
..+++|++|++++|++++.....+...-. ...+.|+.|++++|.+
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~-----------------------------------~~~~~L~~L~l~~n~i 262 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALL-----------------------------------SPNISLLTLSLSCNDI 262 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHh-----------------------------------ccCCCceEEEccCCCC
Confidence 67889999999999988643333321100 0123489999999999
Q ss_pred Cc----cCCcccccccCCCeEeCCCccCcCC----CCccccCC-CCCCEEeCCCCCC
Q 006657 465 SG----DIPEEMTNLLALQSLNLSHNFLAGK----IPENVGAM-RSLESIDFSGNLL 512 (636)
Q Consensus 465 ~g----~~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l-~~L~~L~Ls~N~l 512 (636)
++ .+...+..+++|+++++++|.++.. +...+... +.|++|++.+|.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 72 3345566778999999999999855 44444455 7899999998864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-18 Score=151.66 Aligned_cols=183 Identities=26% Similarity=0.482 Sum_probs=133.0
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCC
Q 006657 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSN 374 (636)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n 374 (636)
++++++.|.+++|+++ .+|..++.+.+|+.|++++|+++ .+|..+.. +++|+.|+++-|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------~lp~~iss-l~klr~lnvgmn 89 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------ELPTSISS-LPKLRILNVGMN 89 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------hcChhhhh-chhhhheecchh
Confidence 3444555555555555 33444555555555555555555 45555543 566666666666
Q ss_pred cCcccCccccCCCCCCCEEEccCccCcc-ccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccccccccccc
Q 006657 375 KFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKL 453 (636)
Q Consensus 375 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (636)
++. ..|..|+.++.|+.||+++|++.. .+|..|..++.
T Consensus 90 rl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t---------------------------------------- 128 (264)
T KOG0617|consen 90 RLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT---------------------------------------- 128 (264)
T ss_pred hhh-cCccccCCCchhhhhhccccccccccCCcchhHHHH----------------------------------------
Confidence 655 678889999999999999998864 45665555554
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCC---CCCeee
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT---FLSHLN 530 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ 530 (636)
|+.|+|++|.+. .+|..++++++|+.|.+..|.+- .+|.+++.+++|+.|.+.+|+++ .+|.+++.+. +=+++.
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r 205 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMR 205 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHh
Confidence 667889999998 88999999999999999999998 88999999999999999999999 6777777664 335567
Q ss_pred ccCCcCcccCCC
Q 006657 531 LSDNNLTGKIPL 542 (636)
Q Consensus 531 ls~N~l~g~ip~ 542 (636)
+..|++...|..
T Consensus 206 ~E~NPwv~pIae 217 (264)
T KOG0617|consen 206 MEENPWVNPIAE 217 (264)
T ss_pred hhhCCCCChHHH
Confidence 778888765543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=2.2e-17 Score=143.85 Aligned_cols=167 Identities=30% Similarity=0.468 Sum_probs=138.4
Q ss_pred ccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCC
Q 006657 244 IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRL 323 (636)
Q Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 323 (636)
+.++++.+.|.||+|.++ .+| ..+..+.+|+.|++++|+++ .+|..+..+++|+.|+++.|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 445667788888888886 556 66788888999999999987 68888999999999999999887 778889999999
Q ss_pred CEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccc
Q 006657 324 EYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403 (636)
Q Consensus 324 ~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 403 (636)
+.||+.+|++... .+|..++. +..|+-|+|++|.|. .+|..++++++|+.|.+.+|.+. .
T Consensus 105 evldltynnl~e~-----------------~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 105 EVLDLTYNNLNEN-----------------SLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred hhhhccccccccc-----------------cCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence 9999998887632 56666664 888999999999997 78889999999999999999987 7
Q ss_pred cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccc
Q 006657 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL 475 (636)
Q Consensus 404 ~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l 475 (636)
+|..++.++. |++|.+.+|+++ .+|++++++
T Consensus 165 lpkeig~lt~----------------------------------------lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 165 LPKEIGDLTR----------------------------------------LRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred CcHHHHHHHH----------------------------------------HHHHhcccceee-ecChhhhhh
Confidence 8888888776 677888899988 667766654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=3.1e-15 Score=166.29 Aligned_cols=117 Identities=38% Similarity=0.644 Sum_probs=103.9
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCCc--cCCccccccCCC-CCCCCCCCCCCC
Q 006657 533 DNNLTGKIPLGTQ--LQGFNASCFAGN-NLCGAPLPKNCT 569 (636)
Q Consensus 533 ~N~l~g~ip~~~~--~~~~~~~~~~~n-~lc~~~~~~~c~ 569 (636)
+|+++|.+|.... ........+.+| .+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997421 222334568888 899877655664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=2.8e-14 Score=158.67 Aligned_cols=130 Identities=32% Similarity=0.493 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCCCCCCCCCCc----ccccEEeCC--CC--CcEEEEEcCCCCCCCCCCccccccCCC
Q 006657 29 IGCIQSERKALLRFKQDLKDPANRLASWSDGNCC----TWAGVVCND--ST--GRVLELRLGNPFLHDDEPFWLEDYDDE 100 (636)
Q Consensus 29 ~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~c----~w~gv~C~~--~~--~~v~~L~L~~~~l~~~~~~~l~~~~~~ 100 (636)
..+.++|..||+++|+++.++.. .+|++..|| .|.||.|+. .. .+|+.|+|+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---------------- 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---------------- 428 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCC----------------
Confidence 34567899999999999966532 489764442 799999952 22 25899999886
Q ss_pred CCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCC
Q 006657 101 TSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNP 179 (636)
Q Consensus 101 ~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~ 179 (636)
.+.|.+|++++.+++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|++++|.+.+
T Consensus 429 --~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 429 --GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred --CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 88899999999999999999999999986 99999999999999999999999999999999999999999998754
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.3e-13 Score=141.51 Aligned_cols=196 Identities=30% Similarity=0.472 Sum_probs=149.2
Q ss_pred CCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
.+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|.+++++.|+++
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS---------------- 134 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS---------------- 134 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh----------------
Confidence 4455667788888887 78888888888888888888886 67888888888888888888887
Q ss_pred CccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccc
Q 006657 351 FSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430 (636)
Q Consensus 351 l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~ 430 (636)
.+|..++ .-.|+.|.+++|+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+
T Consensus 135 ---~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s----------------- 190 (722)
T KOG0532|consen 135 ---HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS----------------- 190 (722)
T ss_pred ---cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH-----------------
Confidence 6777776 456888888888887 67888887788888888888887 67776766665
Q ss_pred eeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCC
Q 006657 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510 (636)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 510 (636)
|+.|.+..|++. .+|+++. .-.|..||+|+|+++ .||-.|.+|+.|++|-|.+|
T Consensus 191 -----------------------lr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 191 -----------------------LRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred -----------------------HHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence 566777778777 6677777 344778888888888 78888888888888888888
Q ss_pred CCCccCchhcc---CCCCCCeeeccCCc
Q 006657 511 LLSGRIPQSIS---SLTFLSHLNLSDNN 535 (636)
Q Consensus 511 ~l~~~~p~~l~---~l~~L~~L~ls~N~ 535 (636)
.+. ..|..+. ...-.++|+..-++
T Consensus 245 PLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 PLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCC-CChHHHHhccceeeeeeecchhcc
Confidence 887 4454432 33445667776664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.2e-11 Score=131.63 Aligned_cols=200 Identities=35% Similarity=0.531 Sum_probs=136.2
Q ss_pred cEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCC-CCCEEEccCCcCCcccchhhhCCCCCCEEEcc
Q 006657 251 YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT-SLEHLDLRSNNFISSIPTWLHKFTRLEYLSLR 329 (636)
Q Consensus 251 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 329 (636)
..++++.|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..++.+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI--SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc--hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence 46777877764222 44556678889999998888 5666666664 8899999998887 555667888888888888
Q ss_pred CcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhh
Q 006657 330 ENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN 409 (636)
Q Consensus 330 ~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 409 (636)
+|+++ .+|..... .+.|+.|++++|++. .+|........|+++++++|++. ..+..+.
T Consensus 172 ~N~l~-------------------~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~ 229 (394)
T COG4886 172 FNDLS-------------------DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS 229 (394)
T ss_pred Cchhh-------------------hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh
Confidence 88887 56655533 677777888888777 55655555556777777777533 3333333
Q ss_pred hhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCc
Q 006657 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLA 489 (636)
Q Consensus 410 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 489 (636)
++.. +..+.+.+|++. .++..++.++++++|++++|.++
T Consensus 230 ~~~~----------------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 230 NLKN----------------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred hccc----------------------------------------ccccccCCceee-eccchhccccccceecccccccc
Confidence 3332 455556677665 33666677777777777777777
Q ss_pred CCCCccccCCCCCCEEeCCCCCCCccCchh
Q 006657 490 GKIPENVGAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 490 ~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
.++. ++.+.+++.|++++|.++...|..
T Consensus 269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 -SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -cccc-ccccCccCEEeccCccccccchhh
Confidence 4443 677777777777777777655544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.8e-11 Score=130.12 Aligned_cols=202 Identities=30% Similarity=0.434 Sum_probs=148.9
Q ss_pred CEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC-CCcEEEccCCcCcccCCccccCCCCCCEEEc
Q 006657 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS-HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304 (636)
Q Consensus 226 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 304 (636)
..+++..+.+...+. .+..++.++.|++.+|.++ .++ ......+ +|++|++++|++. .+|..++.+++|+.|++
T Consensus 96 ~~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~-~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 96 PSLDLNLNRLRSNIS--ELLELTNLTSLDLDNNNIT-DIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred ceeeccccccccCch--hhhcccceeEEecCCcccc-cCc-cccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 467787777743333 4556678889999999887 666 5555564 8999999999887 56667888899999999
Q ss_pred cCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcccc
Q 006657 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384 (636)
Q Consensus 305 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l 384 (636)
++|++. .+|...+..++|+.|++++|+++ .+|..+.. ...|+++.+++|... ..+..+
T Consensus 171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-------------------~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~ 228 (394)
T COG4886 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-------------------DLPPEIEL-LSALEELDLSNNSII-ELLSSL 228 (394)
T ss_pred CCchhh-hhhhhhhhhhhhhheeccCCccc-------------------cCchhhhh-hhhhhhhhhcCCcce-ecchhh
Confidence 999887 55655557788888888888887 67766542 556888888888644 456677
Q ss_pred CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCcc
Q 006657 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 464 (636)
..+.++..+.+++|++.. .+..++++ +.+++|++++|.+
T Consensus 229 ~~~~~l~~l~l~~n~~~~-~~~~~~~l----------------------------------------~~l~~L~~s~n~i 267 (394)
T COG4886 229 SNLKNLSGLELSNNKLED-LPESIGNL----------------------------------------SNLETLDLSNNQI 267 (394)
T ss_pred hhcccccccccCCceeee-ccchhccc----------------------------------------cccceeccccccc
Confidence 788888888888888762 23333333 3378899999998
Q ss_pred CccCCcccccccCCCeEeCCCccCcCCCCcccc
Q 006657 465 SGDIPEEMTNLLALQSLNLSHNFLAGKIPENVG 497 (636)
Q Consensus 465 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 497 (636)
+ .++. ++.+.+++.|++++|.++...|....
T Consensus 268 ~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 268 S-SISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred c-cccc-ccccCccCEEeccCccccccchhhhc
Confidence 8 4444 88889999999999998876665443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=4.4e-13 Score=137.62 Aligned_cols=195 Identities=29% Similarity=0.405 Sum_probs=165.8
Q ss_pred CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+.--...|++.|++. ++| ..+..+..|+.+.+..|.+. .+|..++++..|+.+|++.|+++ ..|..+..++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp-~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELP-EEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCc-hHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344567899999997 777 77888888999999999997 78999999999999999999998 6777777764 8899
Q ss_pred EccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch
Q 006657 327 SLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 327 ~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
.+++|+++ .+|..++ ....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+
T Consensus 149 i~sNNkl~-------------------~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 149 IVSNNKLT-------------------SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred EEecCccc-------------------cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 99999887 8888888 4899999999999998 68899999999999999999998 6777
Q ss_pred hhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCc
Q 006657 407 CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHN 486 (636)
Q Consensus 407 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N 486 (636)
.+..++ |..||+|.|+++ .||-.|.+++.|++|-|.+|
T Consensus 207 El~~Lp-----------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 207 ELCSLP-----------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred HHhCCc-----------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence 666443 788999999999 89999999999999999999
Q ss_pred cCcCCCCccc---cCCCCCCEEeCCCCC
Q 006657 487 FLAGKIPENV---GAMRSLESIDFSGNL 511 (636)
Q Consensus 487 ~l~~~ip~~~---~~l~~L~~L~Ls~N~ 511 (636)
.++ ..|..+ |...--++|+..-++
T Consensus 245 PLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 PLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCC-CChHHHHhccceeeeeeecchhcc
Confidence 998 556554 333445778888885
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-11 Score=123.84 Aligned_cols=195 Identities=21% Similarity=0.156 Sum_probs=89.4
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
..|++++.|||+.|-+............+|+|+.|+++.|.+........-..+++|+.|.++.|.++-.-....+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34444455555544444443333334455555555555555542222111223455556666666554222212334456
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc-chhhhCCCCCCEEEccCcccccccCccceEEEccCCCCc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~ 352 (636)
+|+.|+|.+|...+........++.|++|||++|++.... -...+.++.|+.|+++.+.+...--.....+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~-------- 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL-------- 294 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch--------
Confidence 6666666666422222233344556666666666654221 1234455666666666665542210000000
Q ss_pred cccchHHHHhhhcCceEecCCCcCccc-CccccCCCCCCCEEEccCccCc
Q 006657 353 GNIPAWIGEKLLRNLILRLRSNKFDGQ-IPAELCRLTSLHILDLSHNNFS 401 (636)
Q Consensus 353 g~ip~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 401 (636)
.....+++|++|++..|++... .-..+..+++|+.|.+..|.++
T Consensus 295 -----~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 295 -----DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred -----hhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 0111245666666666665310 0112344556666666666655
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-11 Score=123.30 Aligned_cols=214 Identities=26% Similarity=0.236 Sum_probs=142.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCC--CCccCcCCCCCCeEeccCCCCCCcccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGM--IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLEN 189 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 189 (636)
=.+++.|+...|.+..+...........|++++.|||+.|-+..- +-.-...|++|+.|+++.|++........
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 357888999999888877332224677889999999999877643 22334578899999999998754321110
Q ss_pred cccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhh
Q 006657 190 FSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWL 269 (636)
Q Consensus 190 l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l 269 (636)
-.-+++|+.|.++.|.++ ..+....+..+|+|+.|+|+.|.... +.......++.|+.|||++|++...-.-...
T Consensus 193 ---~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 193 ---TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred ---hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCccccccccccc
Confidence 125678888888888888 43334456678889999998885321 2223455677888888888887533222345
Q ss_pred cCCCCCcEEEccCCcCccc-CCcc-----ccCCCCCCEEEccCCcCCcc-cchhhhCCCCCCEEEccCcccc
Q 006657 270 FGLSHLVFLDLGFNSFGGP-IPDG-----LQNLTSLEHLDLRSNNFISS-IPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.++.|+.|+++.+.+... .|+. ...+++|++|+++.|++... .-..+..+++|+.|.+..|.++
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6778888888888877643 2222 24568888888888887421 1123455667777777777765
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=7.7e-11 Score=112.21 Aligned_cols=209 Identities=25% Similarity=0.260 Sum_probs=145.0
Q ss_pred eecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccc
Q 006657 106 GKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFL 185 (636)
Q Consensus 106 g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 185 (636)
..+|-.+.-+++|..+.+|++.-. .|-.....-|.|+++.+.+..+. ..|. +--...+....-+.-....+
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G----- 274 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNG----- 274 (490)
T ss_pred cccccchHHhhhhheeeeeccchh--heeceeecCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCC-----
Confidence 344556667788888888877644 23333334577888888777655 2221 11111111111111000010
Q ss_pred cccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCC
Q 006657 186 YLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 186 ~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (636)
.....+.-.+.|+++|||+|.++.+.. +..-.|+++.|++++|++.. + ..++.+++|+.||||+|.++ .+.
T Consensus 275 --~~~~~~dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~-v--~nLa~L~~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 275 --SALVSADTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRT-V--QNLAELPQLQLLDLSGNLLA-ECV 345 (490)
T ss_pred --ceEEecchHhhhhhccccccchhhhhh---hhhhccceeEEeccccceee-e--hhhhhcccceEeecccchhH-hhh
Confidence 111234556789999999999987754 56678999999999999973 3 34888999999999999987 555
Q ss_pred hhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc-chhhhCCCCCCEEEccCccccc
Q 006657 266 PSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 266 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
.|-.++.+++.|.|++|.+.. -..++++-+|..||+++|++.... -..++++|.|+.+.|.+|++.+
T Consensus 346 -Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 346 -GWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred -hhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777789999999999998863 245788899999999999987322 3568899999999999999873
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.7e-11 Score=119.34 Aligned_cols=245 Identities=21% Similarity=0.152 Sum_probs=144.7
Q ss_pred CcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCC---CCchh-------hcCCCCC
Q 006657 74 GRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENN---QIPVF-------LGFMGSL 143 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~---~ip~~-------l~~l~~L 143 (636)
..++.|+|+++.++.. -...+.+.+.+.++|+.-++|.-- +|. .+|+. +-.+++|
T Consensus 30 ~s~~~l~lsgnt~G~E--------------Aa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTE--------------AARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred CceEEEeccCCchhHH--------------HHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCce
Confidence 3588999988744311 111234455666677777776432 221 23332 3345677
Q ss_pred CEEEccCCccCCCCCccC----cCCCCCCeEeccCCCCCCcccccccc-----cccccccCCCCCcEEEccCCCCCCC--
Q 006657 144 RHIDLSRAELTGMIPHQL----GNLFNLQYLDLSIDTHNPISFSFLYL-----ENFSWLSGLSLLKHLDLTGVDLSTA-- 212 (636)
Q Consensus 144 ~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~~~~~~~~~~~-----~~l~~l~~l~~L~~L~Ls~n~l~~~-- 212 (636)
++||||.|.+.-..++.+ ..+..|++|.|.+|.+.......+.. ..-...+.-++||++..++|.+...
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 777777777764444433 35667777777777553321111000 0112245567788888888877765
Q ss_pred CChhhhhCCCCCCCEEEeecCCCCCC---CCCccccCCCCCcEEEcccCCCCCC---CChhhhcCCCCCcEEEccCCcCc
Q 006657 213 SDWFLVTNMLPSLQVLKLSACSLHNS---LPELPIANFSSLYTLDLSYNEFDNT---LVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 213 ~~~~~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
..+...+...+.|+.+.+++|.+... +-...+..+++|++|||..|.++.. .....+..+++|++|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 33455566678888888888877421 1113456778888888888877522 12245666778888888888776
Q ss_pred ccCCccc-----cCCCCCCEEEccCCcCCccc----chhhhCCCCCCEEEccCccc
Q 006657 287 GPIPDGL-----QNLTSLEHLDLRSNNFISSI----PTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 287 ~~~p~~l-----~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l 333 (636)
..-...+ ...++|+.|.+.+|.++... ...+...+.|+.|+|++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4322222 23577888888888776322 23344567777788887776
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=4e-11 Score=116.81 Aligned_cols=253 Identities=24% Similarity=0.258 Sum_probs=137.4
Q ss_pred ccccCCCCCCEEeCCCCCCCCC---CCchhhcCCCCCCEEEccCC---ccCCCCCccCcCCCCCCeEeccCCCCCCcccc
Q 006657 110 PSLLDLKHLVYLDLSNNNFENN---QIPVFLGFMGSLRHIDLSRA---ELTGMIPHQLGNLFNLQYLDLSIDTHNPISFS 183 (636)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n~l~~~---~ip~~l~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 183 (636)
+.+-....++.++||+|.|... .+...+.+.++|+.-++++- +....+|+.+..+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l------------------- 84 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML------------------- 84 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH-------------------
Confidence 3445566777777777776532 13334445556666665542 2222333322110
Q ss_pred cccccccccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCC------------CccccCCCC
Q 006657 184 FLYLENFSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLP------------ELPIANFSS 249 (636)
Q Consensus 184 ~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p------------~~~~~~l~~ 249 (636)
.+.+..+++|++||||+|.+... +.+-..+..+..|++|+|.+|.+...-. ......-+.
T Consensus 85 ------~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 85 ------SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred ------HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 01234444555555555544322 3333344556666666666666541100 011233456
Q ss_pred CcEEEcccCCCCCCC---ChhhhcCCCCCcEEEccCCcCccc----CCccccCCCCCCEEEccCCcCCcc----cchhhh
Q 006657 250 LYTLDLSYNEFDNTL---VPSWLFGLSHLVFLDLGFNSFGGP----IPDGLQNLTSLEHLDLRSNNFISS----IPTWLH 318 (636)
Q Consensus 250 L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~ 318 (636)
|+++..++|++...- ....|...+.|+++.++.|.+... +...+..+++|+.|||.+|-++.. +...+.
T Consensus 159 Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 777777777765221 113455667788888887766421 223456678888888888877633 234455
Q ss_pred CCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc----cCccccCCCCCCCEEE
Q 006657 319 KFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG----QIPAELCRLTSLHILD 394 (636)
Q Consensus 319 ~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ 394 (636)
.+++|++|++++|.+...-. -.+-..+....++|+++.+.+|.++. .+...+...+.|..|+
T Consensus 239 s~~~L~El~l~dcll~~~Ga--------------~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGA--------------IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred ccchheeecccccccccccH--------------HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 66777888887777652100 01222333345677778888877762 2223344577888888
Q ss_pred ccCccCc
Q 006657 395 LSHNNFS 401 (636)
Q Consensus 395 Ls~N~l~ 401 (636)
|++|++.
T Consensus 305 LngN~l~ 311 (382)
T KOG1909|consen 305 LNGNRLG 311 (382)
T ss_pred CCccccc
Confidence 8888883
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=9.4e-10 Score=100.80 Aligned_cols=127 Identities=28% Similarity=0.299 Sum_probs=44.5
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhC-CCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhh-cC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTN-MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWL-FG 271 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~ 271 (636)
.+..++++|+|.+|.++.+.. ++ .+.+|+.|++++|.++. ++ .+..++.|+.|++++|.++ .+. ..+ ..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~-l~--~l~~L~~L~~L~L~~N~I~-~i~-~~l~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITK-LE--GLPGLPRLKTLDLSNNRIS-SIS-EGLDKN 86 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS--S---T--T----TT--EEE--SS----S-C-HHHHHH
T ss_pred ccccccccccccccccccccc----hhhhhcCCCEEECCCCCCcc-cc--CccChhhhhhcccCCCCCC-ccc-cchHHh
Confidence 344456666666666665532 22 45667777777777763 33 3666777788888888776 444 333 35
Q ss_pred CCCCcEEEccCCcCcccC-CccccCCCCCCEEEccCCcCCccc---chhhhCCCCCCEEEcc
Q 006657 272 LSHLVFLDLGFNSFGGPI-PDGLQNLTSLEHLDLRSNNFISSI---PTWLHKFTRLEYLSLR 329 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~ 329 (636)
+++|++|++++|++...- -..+..+++|++|++.+|.++... ...+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 778888888888776321 134567788888888888876432 2345678888888754
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=8.1e-10 Score=101.21 Aligned_cols=84 Identities=35% Similarity=0.430 Sum_probs=17.9
Q ss_pred cCCCCCCEEEccCCccCCCCCccCc-CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChh
Q 006657 138 GFMGSLRHIDLSRAELTGMIPHQLG-NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF 216 (636)
Q Consensus 138 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~ 216 (636)
.+..++++|+|++|.++. + +.++ .+.+|+.|++++|.+.... .+..++.|++|++++|.++....
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~----------~l~~L~~L~~L~L~~N~I~~i~~-- 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE----------GLPGLPRLKTLDLSNNRISSISE-- 81 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T----------T----TT--EEE--SS---S-CH--
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc----------CccChhhhhhcccCCCCCCcccc--
Confidence 344567777777777763 2 2454 4666777777777665431 14455566666666666555432
Q ss_pred hhh-CCCCCCCEEEeecCCCC
Q 006657 217 LVT-NMLPSLQVLKLSACSLH 236 (636)
Q Consensus 217 ~~~-~~l~~L~~L~L~~n~l~ 236 (636)
.+ ..+++|++|++++|++.
T Consensus 82 -~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 82 -GLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -HHHHH-TT--EEE-TTS---
T ss_pred -chHHhCCcCCEEECcCCcCC
Confidence 11 13455555555555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=5.6e-10 Score=106.42 Aligned_cols=134 Identities=25% Similarity=0.305 Sum_probs=99.2
Q ss_pred cCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCC
Q 006657 245 ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLE 324 (636)
Q Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 324 (636)
...+.|+.+|||+|.++ .+. ....-.++++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-.++.+.+
T Consensus 281 dTWq~LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhh-hhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 34467888888888886 555 6677788888999998888732 34778888899999988887 4455666778888
Q ss_pred EEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc-CccccCCCCCCCEEEccCccCccc
Q 006657 325 YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ-IPAELCRLTSLHILDLSHNNFSGT 403 (636)
Q Consensus 325 ~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ 403 (636)
.|.|++|.+... ..+. .+-+|..|++++|++... --..++++|.|+.+.|.+|++.+.
T Consensus 356 tL~La~N~iE~L--------------------SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETL--------------------SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhh--------------------hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888888877621 1223 266788888888888631 234688999999999999999854
Q ss_pred c
Q 006657 404 L 404 (636)
Q Consensus 404 ~ 404 (636)
.
T Consensus 415 v 415 (490)
T KOG1259|consen 415 V 415 (490)
T ss_pred c
Confidence 3
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.81 E-value=5.3e-09 Score=72.10 Aligned_cols=38 Identities=45% Similarity=1.076 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCC-CCCCCCCCCC-C--CCCcccccEEeC
Q 006657 33 QSERKALLRFKQDLK-DPANRLASWS-D--GNCCTWAGVVCN 70 (636)
Q Consensus 33 ~~~~~~Ll~~k~~~~-~~~~~l~~W~-~--~~~c~w~gv~C~ 70 (636)
++|++||++||+++. +|.+.+.+|+ . .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999997 5778999998 3 699999999996
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=6e-10 Score=118.77 Aligned_cols=249 Identities=29% Similarity=0.295 Sum_probs=152.2
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..+..++.+++..|.+.. +-..+..+.+|+.|++.+|++.. +...+..+++|++|++++|.+..+ ..
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i----------~~ 135 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL----------EG 135 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc----------cc
Confidence 355667777777777763 33446677888888888888873 333366778888888888877553 22
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+..++.|+.|++++|.++.... +..++.|+.+++++|.+...-+.. ...+.+++.+++..|.+. .+ ..+..+
T Consensus 136 l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i--~~~~~~ 207 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EI--EGLDLL 207 (414)
T ss_pred hhhccchhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cc--cchHHH
Confidence 5666668888888888777753 344777888888888776321101 366777777888887764 22 334445
Q ss_pred CCCcEEEccCCcCcccCCccccCCCC--CCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTS--LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
..+..+++..|.++..-+ +..+.. |+.+++++|++. ..+..+..+.++..|++.+|++...-.
T Consensus 208 ~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~------------ 272 (414)
T KOG0531|consen 208 KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG------------ 272 (414)
T ss_pred HHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc------------
Confidence 555556777777663322 222333 777888888776 333445666777777777777652210
Q ss_pred CccccchHHHHhhhcCceEecCCCcCcc---cCccc-cCCCCCCCEEEccCccCccccch
Q 006657 351 FSGNIPAWIGEKLLRNLILRLRSNKFDG---QIPAE-LCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 351 l~g~ip~~~~~~~~~L~~L~L~~n~l~~---~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
++ ....+..+....|.+.. ..... ....+.++.+.+..|......+.
T Consensus 273 ----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 273 ----LE-----RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ----cc-----ccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 00 12333344444554431 11111 45567788888888877755543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=5.8e-09 Score=78.49 Aligned_cols=60 Identities=33% Similarity=0.497 Sum_probs=36.3
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCC
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 512 (636)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666644445566666666666666666655555566666666666666653
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=4.2e-09 Score=79.24 Aligned_cols=61 Identities=39% Similarity=0.537 Sum_probs=56.6
Q ss_pred cCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcC
Q 006657 476 LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 476 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 536 (636)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977678899999999999999999988888999999999999999985
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.4e-08 Score=115.75 Aligned_cols=59 Identities=39% Similarity=0.578 Sum_probs=26.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
.++.|++|||++|.--+ .+|..++.+-+||||+++++.+. .+|..+++|.+|.+|++..
T Consensus 569 ~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred hCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccc
Confidence 34444444444433221 24444444444444444444444 4444444444444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=3.3e-09 Score=113.14 Aligned_cols=107 Identities=30% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCC
Q 006657 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299 (636)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 299 (636)
..+++|+.|++.+|++.. +. ..+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++.. ..+..++.|
T Consensus 92 ~~~~~l~~l~l~~n~i~~-i~-~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-IE-NLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred ccccceeeeeccccchhh-cc-cchhhhhcchheeccccccccc---cchhhccchhhheeccCcchhc--cCCccchhh
Confidence 334455555555555542 11 1144555666666666665422 2244445566666666665522 234445666
Q ss_pred CEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccc
Q 006657 300 EHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 300 ~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.+++++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666666666653332 1 345556666666666544
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=9.9e-08 Score=109.02 Aligned_cols=302 Identities=23% Similarity=0.230 Sum_probs=168.4
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCC-CCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL-HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
...+...+-+|.+...+. -...++|++|-+.+|.. ...++...|..++.|++|||++|.--+.+| ..++.+-+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhh
Confidence 445555555555544432 22345788888887752 224443447778888888888776555666 778888888
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc--------cCccceEEEcc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM--------ISSVLVVFDIG 347 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~L~~L~l~ 347 (636)
++|++++..+. .+|..++++..|.+|++..+.....+|.....+++|++|.+..-..... ..+.|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 88888888877 6788888888888888887766555666666688888887765542111 01123322222
Q ss_pred CCCCccccchHHHHhhhcC----ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchh---------hhhhhhh
Q 006657 348 ENGFSGNIPAWIGEKLLRN----LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC---------INNLTAM 414 (636)
Q Consensus 348 ~n~l~g~ip~~~~~~~~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---------l~~l~~L 414 (636)
.... .+-..+. .+..| +.+.+..+... ..+..+..+.+|+.|.+.++.+....... |.++...
T Consensus 677 ~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 677 ISSV--LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred cchh--HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 1111 0000111 02222 12333332222 34556778888999999888876322211 1111111
Q ss_pred ccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCC-CC
Q 006657 415 MNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK-IP 493 (636)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~-ip 493 (636)
.... ......+.+....++|+.|.+..+.....+.+....+..+..+-+..+.+.+. .-
T Consensus 753 ~~~~--------------------~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 753 SILN--------------------CHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML 812 (889)
T ss_pred Hhhc--------------------cccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee
Confidence 1000 00112223333456688888887777666666666666676666666666655 33
Q ss_pred ccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 494 ENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
.+.+.++++..+.+++=. |+.+.+..|+-.+..|.
T Consensus 813 ~~l~~l~~i~~~~l~~~~--------------l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLK--------------LEELIVEECPKLGKLPL 847 (889)
T ss_pred ecCCCCceeEecccCccc--------------hhheehhcCcccccCcc
Confidence 444555555444333322 55555555555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.4e-09 Score=103.79 Aligned_cols=184 Identities=26% Similarity=0.202 Sum_probs=126.3
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCC-CCCccccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT-HNPISFSFLYLENFSWLS 194 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~~l~~l~ 194 (636)
++|++||||+..++...+-..+..|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++... .. --+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~---~~----ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA---LQ----LLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH---HH----HHHH
Confidence 4699999999999876666778889999999999999999988899999999999999753 11110 00 1167
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC--C-CCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH--N-SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
+|+.|.+|+++.+.+....--...-.--++|+.|+++++.-. . .+. .-...+++|..|||++|.--.......|.+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHh
Confidence 889999999998877655211111122367888888876421 1 111 223567888888888775322222256777
Q ss_pred CCCCcEEEccCCcCcccCCcc---ccCCCCCCEEEccCCcC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDG---LQNLTSLEHLDLRSNNF 309 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l 309 (636)
++.|++|.++.|.. .+|.. +...+.|.+|++.++--
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 88888888888753 45543 45677888888876643
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5.3e-08 Score=93.17 Aligned_cols=88 Identities=23% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCCCCCEEeCCCCCCCCC-CCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENN-QIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~-~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..++++.+||.+|.++.- .+...+.++|+|++|+++.|++...|-..-..+.+|++|-|.+..+.-... -+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-------~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-------TSS 141 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh-------hhh
Confidence 356677777777777532 233445667777777777777663332211345567777776653311100 022
Q ss_pred ccCCCCCcEEEccCCC
Q 006657 193 LSGLSLLKHLDLTGVD 208 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~ 208 (636)
+..++.+++|.+|.|+
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 5566666666666663
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=5.8e-09 Score=110.54 Aligned_cols=161 Identities=29% Similarity=0.318 Sum_probs=111.3
Q ss_pred CccccCCCCCCEEeCCCCCCCCCC--------Cchhh----------------cC------CCCCCEEEccCCccCCCCC
Q 006657 109 NPSLLDLKHLVYLDLSNNNFENNQ--------IPVFL----------------GF------MGSLRHIDLSRAELTGMIP 158 (636)
Q Consensus 109 ~~~l~~l~~L~~L~Ls~n~l~~~~--------ip~~l----------------~~------l~~L~~L~L~~n~l~~~~p 158 (636)
|-+|+.++.||+|.|.++.+.... +-..| +. -..|.+.+.++|++. .+-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 557889999999999999875320 00000 00 123566667777776 455
Q ss_pred ccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC
Q 006657 159 HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 238 (636)
Q Consensus 159 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 238 (636)
.++.-++.|+.|||++|++.... .+..+++|++|||++|.+...|.+. ...+ +|+.|.+++|.++..
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~----------~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc-~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD----------NLRRLPKLKHLDLSYNCLRHVPQLS--MVGC-KLQLLNLRNNALTTL 247 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH----------HHHhcccccccccccchhccccccc--hhhh-hheeeeecccHHHhh
Confidence 56667788888888888876542 2677888888999988888876532 1223 388888888888732
Q ss_pred CCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc
Q 006657 239 LPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 239 ~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
..+.++++|+.||+++|-+.+.-.-..++.+..|+.|+|.+|.+.
T Consensus 248 ---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 ---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 247788888888888888775433345666777888888888764
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=3e-08 Score=84.17 Aligned_cols=87 Identities=25% Similarity=0.378 Sum_probs=47.0
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccC
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSD 533 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 533 (636)
.+.|+|++|+++ .+|.++..++.|+.|+++.|.+. ..|.-+..+.++..||..+|.+. .+|..+-.-+.....++.+
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence 455666666665 55555666666666666666665 44555555556666666666555 3443333333333444455
Q ss_pred CcCcccCCCC
Q 006657 534 NNLTGKIPLG 543 (636)
Q Consensus 534 N~l~g~ip~~ 543 (636)
+++.+.+|..
T Consensus 156 epl~~~~~~k 165 (177)
T KOG4579|consen 156 EPLGDETKKK 165 (177)
T ss_pred CcccccCccc
Confidence 5555555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=2.3e-08 Score=106.19 Aligned_cols=82 Identities=35% Similarity=0.395 Sum_probs=48.2
Q ss_pred ccEEECcCCccCccCCcc-cccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc-hhccCCCCCCeeec
Q 006657 454 VRCMDLSGNNLSGDIPEE-MTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP-QSISSLTFLSHLNL 531 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l 531 (636)
|+.|||+.|.++ .+|.. ...+. |+.|++++|.++.. ..+.++.+|+.||+++|-+++.-. ..+..+.+|+.|+|
T Consensus 211 LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 211 LKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred ccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 566666666665 34432 22333 77777777776632 235667777777777776664321 12445566777777
Q ss_pred cCCcCccc
Q 006657 532 SDNNLTGK 539 (636)
Q Consensus 532 s~N~l~g~ 539 (636)
.+|++.|.
T Consensus 287 eGNPl~c~ 294 (1096)
T KOG1859|consen 287 EGNPLCCA 294 (1096)
T ss_pred cCCccccC
Confidence 77776543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=3.2e-07 Score=87.96 Aligned_cols=140 Identities=24% Similarity=0.199 Sum_probs=91.4
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
..++.++++||.+|.++++.++...+.++|.|+.|+++.|++...|.... ....+|++|-|.+..+.-.-....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 35678899999999999988777788999999999999999986655211 46678999999888876544446677888
Q ss_pred CCcEEEccCCcCccc--CCccccCC-CCCCEEEccCCcCCc--ccchhhhCCCCCCEEEccCcccc
Q 006657 274 HLVFLDLGFNSFGGP--IPDGLQNL-TSLEHLDLRSNNFIS--SIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~--~p~~l~~l-~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
.+++|.++.|.+... ........ +.+++|..-.|...- ..-..-.-++++..+.+..|++.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence 899999988844311 11111111 234444444442210 00011123567777777777665
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.5e-08 Score=93.06 Aligned_cols=158 Identities=21% Similarity=0.212 Sum_probs=104.6
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCc-CCcc-cchhhhCCCCCCEE
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN-FISS-IPTWLHKFTRLEYL 326 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L 326 (636)
.||+|||+...++..-....++.+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++.. ..--+.+++.|++|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888888777643333456777888888888888887777778888888888888763 3321 12345678888888
Q ss_pred EccCcccccc--------cCccceEEEccCCC--CccccchHHHHhhhcCceEecCCCc-CcccCccccCCCCCCCEEEc
Q 006657 327 SLRENRLQGM--------ISSVLVVFDIGENG--FSGNIPAWIGEKLLRNLILRLRSNK-FDGQIPAELCRLTSLHILDL 395 (636)
Q Consensus 327 ~L~~n~l~~~--------~p~~L~~L~l~~n~--l~g~ip~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L 395 (636)
+++.|.+..+ +.++++.|++++.. +..+--..+...++++..|+|++|. ++...-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8888876643 34466777776542 2222223334457888888888764 44444456677788888888
Q ss_pred cCccCccccchhh
Q 006657 396 SHNNFSGTLPRCI 408 (636)
Q Consensus 396 s~N~l~~~~p~~l 408 (636)
+.|. +.+|+.+
T Consensus 346 sRCY--~i~p~~~ 356 (419)
T KOG2120|consen 346 SRCY--DIIPETL 356 (419)
T ss_pred hhhc--CCChHHe
Confidence 7774 3555544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=3.4e-07 Score=86.65 Aligned_cols=140 Identities=22% Similarity=0.155 Sum_probs=71.0
Q ss_pred ccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCcc-------------ccCCCCCcEEEccc
Q 006657 193 LSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELP-------------IANFSSLYTLDLSY 257 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-------------~~~l~~L~~L~Ls~ 257 (636)
+.+|+.|+..+||+|.+... +..-..++.-+.|++|.+++|.+. .+.... ..+-+.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 44555555555555555433 222233455566666666666553 221111 12345677777777
Q ss_pred CCCCCCCCh----hhhcCCCCCcEEEccCCcCccc-----CCccccCCCCCCEEEccCCcCCcccc----hhhhCCCCCC
Q 006657 258 NEFDNTLVP----SWLFGLSHLVFLDLGFNSFGGP-----IPDGLQNLTSLEHLDLRSNNFISSIP----TWLHKFTRLE 324 (636)
Q Consensus 258 n~l~~~~~~----~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~ 324 (636)
|++.. .+. ..+..-.+|+++.+..|.+.-. +-..+..+.+|+.||+.+|-++-... ..+...+.|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 76642 221 1223334677777777755411 00112345677777777776653222 2333445567
Q ss_pred EEEccCcccc
Q 006657 325 YLSLRENRLQ 334 (636)
Q Consensus 325 ~L~L~~n~l~ 334 (636)
+|.+..|-++
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 7777666554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=1.6e-07 Score=88.89 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCC--CCc-------hhhcCCCCCCE
Q 006657 75 RVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENN--QIP-------VFLGFMGSLRH 145 (636)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~--~ip-------~~l~~l~~L~~ 145 (636)
.++.++|+++.++... ...+...+.+-++|+..+++.-..... .+| ..+-.||+|+.
T Consensus 31 ~~~evdLSGNtigtEA--------------~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 31 ELVEVDLSGNTIGTEA--------------MEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred ceeEEeccCCcccHHH--------------HHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 5778888887443211 111223344455566655554321110 122 22334666666
Q ss_pred EEccCCccCCCCCccC----cCCCCCCeEeccCCCCCCccccccc-----ccccccccCCCCCcEEEccCCCCCCCCC--
Q 006657 146 IDLSRAELTGMIPHQL----GNLFNLQYLDLSIDTHNPISFSFLY-----LENFSWLSGLSLLKHLDLTGVDLSTASD-- 214 (636)
Q Consensus 146 L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~~~~~~~~~~-----~~~l~~l~~l~~L~~L~Ls~n~l~~~~~-- 214 (636)
.+||.|.+....|+.+ +.-+.|++|.+++|.+-......+. .........-+.|+......|++...+.
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 6666666655555433 3445566666666654322111110 0000123445666666666666654421
Q ss_pred hhhhhCCCCCCCEEEeecCCCCCC----CCCccccCCCCCcEEEcccCCCCCC---CChhhhcCCCCCcEEEccCCcCc
Q 006657 215 WFLVTNMLPSLQVLKLSACSLHNS----LPELPIANFSSLYTLDLSYNEFDNT---LVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 215 ~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
|...+..-.+|+++.+.+|.+... +....+..+.+|+.||+..|.++-. +....+..++.|++|.+..|-++
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 222233334666666666665421 0001123445566666666655421 11123334445555555555444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=4.6e-07 Score=77.06 Aligned_cols=56 Identities=29% Similarity=0.458 Sum_probs=29.3
Q ss_pred ccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhh
Q 006657 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411 (636)
Q Consensus 354 ~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 411 (636)
.+|..+...++..+.++|++|.++ .+|..+..++.|+.++++.|++. ..|+.+..+
T Consensus 67 ~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L 122 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPL 122 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHH
Confidence 444444443445555555555555 45555556666666666666655 344444333
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.5e-05 Score=54.99 Aligned_cols=35 Identities=31% Similarity=0.622 Sum_probs=14.2
Q ss_pred CCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 478 LQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 478 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=3.2e-05 Score=53.28 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=17.5
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT 154 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~ 154 (636)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 24444555555555555555544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00015 Score=75.03 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=33.3
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
+.+++.|++++|.++ .+|. -.++|++|.++++.-...+|..+. ++|++|++++|.....+|..|+.|+++.+.
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~ 123 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKGSA 123 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCCCC
Confidence 344555555555444 2331 123455555554332233443331 355566666552223445555555554443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00023 Score=73.53 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=41.9
Q ss_pred cCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCC
Q 006657 294 QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRS 373 (636)
Q Consensus 294 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~ 373 (636)
..+.++++|++++|.++ .+|. + -++|++|.++++.- + ..+|..+ ..+|+.|.+++
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~n-----------------L-tsLP~~L---P~nLe~L~Ls~ 103 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNN-----------------L-TTLPGSI---PEGLEKLTVCH 103 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCC-----------------c-ccCCchh---hhhhhheEccC
Confidence 34577888888888665 4451 1 23577777766432 1 1444433 24667777777
Q ss_pred CcCcccCccccCCCCCCCEEEccCccC
Q 006657 374 NKFDGQIPAELCRLTSLHILDLSHNNF 400 (636)
Q Consensus 374 n~l~~~~p~~l~~l~~L~~L~Ls~N~l 400 (636)
|.....+|. +|+.|+++.+..
T Consensus 104 Cs~L~sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 104 CPEISGLPE------SVRSLEIKGSAT 124 (426)
T ss_pred ccccccccc------ccceEEeCCCCC
Confidence 632223443 356666665543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=1.9e-05 Score=88.36 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=25.5
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 259 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~ 259 (636)
.++++|+.||+|+.+++... .++++++|++|.+.+=.+.....-..+.++++|+.||+|...
T Consensus 170 ~sFpNL~sLDIS~TnI~nl~----GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNLS----GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCccceeecCCCCccCcH----HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 34444444444444444331 344444444444444333321111123444555555554443
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=2.8e-05 Score=86.92 Aligned_cols=154 Identities=22% Similarity=0.240 Sum_probs=84.8
Q ss_pred CCCCEEeCCCCCCCCCCCchhhc-CCCCCCEEEccCCccCCC-CCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLG-FMGSLRHIDLSRAELTGM-IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
.+|++||+++.......=|..++ .+|+|+.|.+++-.+... .-....++++|..||+|+.++... ..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HHH
Confidence 46667777665532222233333 366777777766555322 222234566777777776655332 235
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCC--CC---ccccCCCCCcEEEcccCCCCCCCChhh
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSL--PE---LPIANFSSLYTLDLSYNEFDNTLVPSW 268 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (636)
+++++|+.|.+.+-.+.....+ ..+.++++|+.||+|.......- .. .--..+|+|+.||.|++.+.+.+....
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred hccccHHHHhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 6667777776666666654432 23455777777777665443211 00 112346788888888887776555444
Q ss_pred hcCCCCCcEEEc
Q 006657 269 LFGLSHLVFLDL 280 (636)
Q Consensus 269 l~~l~~L~~L~L 280 (636)
+..-++|+.+..
T Consensus 271 l~sH~~L~~i~~ 282 (699)
T KOG3665|consen 271 LNSHPNLQQIAA 282 (699)
T ss_pred HHhCccHhhhhh
Confidence 444555555543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00025 Score=64.85 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccC
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSG 195 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 195 (636)
.....+||++|.+-. + ..|..+++|.+|.+.+|+|+..-|.--.-+++|+.|.+.+|++... .++..+..
T Consensus 42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-------~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-------GDLDPLAS 111 (233)
T ss_pred cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-------hhcchhcc
Confidence 355667777777652 1 2355677777777777777744443333456677777777665432 22233455
Q ss_pred CCCCcEEEccCCCCCCC
Q 006657 196 LSLLKHLDLTGVDLSTA 212 (636)
Q Consensus 196 l~~L~~L~Ls~n~l~~~ 212 (636)
+++|++|.+-+|..+..
T Consensus 112 ~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHK 128 (233)
T ss_pred CCccceeeecCCchhcc
Confidence 55555555555544433
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00014 Score=69.39 Aligned_cols=114 Identities=23% Similarity=0.248 Sum_probs=68.8
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCC--ccCCCCCccCcCCCCCCeEeccCCCCCCcccccc
Q 006657 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRA--ELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFL 185 (636)
Q Consensus 108 i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 185 (636)
+..-.-.+..|+.|++.+..++.. ..+-.+++|++|.++.| ++++.++.....+++|++|+++.|++...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l----- 106 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL----- 106 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-----
Confidence 444444555666666666665522 23445788888888888 66666666666778888888888876542
Q ss_pred cccccccccCCCCCcEEEccCCCCCCCCChh-hhhCCCCCCCEEEee
Q 006657 186 YLENFSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLS 231 (636)
Q Consensus 186 ~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~l~~L~~L~L~ 231 (636)
..+..+..+.+|..|++.+|..+.....- ..+..+++|++|+-.
T Consensus 107 --stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 107 --STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred --cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 22333566677777777777655542211 123345555555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.80 E-value=0.0021 Score=59.03 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=15.5
Q ss_pred cCCCCCCEEEccCCcCCccc---chhhhCCCCCCEEEccC
Q 006657 294 QNLTSLEHLDLRSNNFISSI---PTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 294 ~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~ 330 (636)
..+++|++|.+-+|..+..- --.+..+++|+.||.++
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 34444444444444443111 01233445555555544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.0012 Score=63.13 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=18.2
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 236 (636)
..+++|++|.++.|.+.....+......+|+|++|++++|++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444555555555533322222222333355555555555543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.67 E-value=5.4e-05 Score=76.35 Aligned_cols=267 Identities=19% Similarity=0.116 Sum_probs=141.6
Q ss_pred cCCCCCCEEeCCCCC-CCCCCCchhhcCCCCCCEEEccCC-ccCCCCCccC-cCCCCCCeEeccCCCCCCcccccccccc
Q 006657 113 LDLKHLVYLDLSNNN-FENNQIPVFLGFMGSLRHIDLSRA-ELTGMIPHQL-GNLFNLQYLDLSIDTHNPISFSFLYLEN 189 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~-l~~~~ip~~l~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 189 (636)
.+++++++|++.++. +++...-..-..+++|++|++..| .++...-..+ ..+++|++++++++.-... ..
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~-------~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG-------NG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc-------Cc
Confidence 467777777777765 333222233345778888888774 4443333322 3577888888887643221 11
Q ss_pred c-ccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCC-ccccCCCCCcEEEcccCCCCCCCChh
Q 006657 190 F-SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDNTLVPS 267 (636)
Q Consensus 190 l-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (636)
+ ....+++.++.+.+.++.-.+...+...-+.++.+..+++..|..-..... ..-..+..|+.|+.++....+..+-.
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 1 113455556666555543333222222224455566666656532211110 11124567888888776543222212
Q ss_pred hh-cCCCCCcEEEccCCcC-cccCCccc-cCCCCCCEEEccCCcCCcc--cchhhhCCCCCCEEEccCcccccccCccce
Q 006657 268 WL-FGLSHLVFLDLGFNSF-GGPIPDGL-QNLTSLEHLDLRSNNFISS--IPTWLHKFTRLEYLSLRENRLQGMISSVLV 342 (636)
Q Consensus 268 ~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~ 342 (636)
.+ .+..+|+.|.++.++. +..-...+ .+.+.|+.+++..+..... +...-.+++.|+.+.++.+...... ..+
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--gi~ 391 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--GIR 391 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh--hhh
Confidence 22 4567888888888763 22111112 3567888888887765321 2222345778888888877543110 000
Q ss_pred EEEccCCCCccccchHHHHhhhcCceEecCCCcCc-ccCccccCCCCCCCEEEccCccC
Q 006657 343 VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD-GQIPAELCRLTSLHILDLSHNNF 400 (636)
Q Consensus 343 ~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l 400 (636)
. -......+..+..+.|+++..+ ...-..+..+++|+.+++-+++-
T Consensus 392 ~------------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 392 H------------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred h------------hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 0 0011112566777778777654 22334456777888888877653
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00013 Score=69.75 Aligned_cols=79 Identities=28% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCcccch-----hhhC
Q 006657 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP-DGLQNLTSLEHLDLRSNNFISSIPT-----WLHK 319 (636)
Q Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~ 319 (636)
.++.|++|.||-|.++. + ..+..+++|++|+|..|.|..... ..+.++++|+.|+|..|.-.|..+. .+.-
T Consensus 39 kMp~lEVLsLSvNkIss-L--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS-L--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeecccccc-c--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 44444444444444431 1 224444555555555554432110 1234556666666666555444432 2334
Q ss_pred CCCCCEEE
Q 006657 320 FTRLEYLS 327 (636)
Q Consensus 320 l~~L~~L~ 327 (636)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55665554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.41 E-value=0.0057 Score=53.40 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=12.9
Q ss_pred ccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEcc
Q 006657 242 LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281 (636)
Q Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 281 (636)
..|.++++|+.+++..+ +. .+....|.++++++.+.+.
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred hhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 33444444444444332 22 2222334444344444443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.23 E-value=0.0086 Score=52.25 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=38.4
Q ss_pred ccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCC
Q 006657 242 LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFT 321 (636)
Q Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 321 (636)
..|.++++|+.+.+.. .+. .+....|.++++|+.+.+..+ +...-...|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4556666666666653 333 444455666666666666654 4433334455555666666654 33222334455556
Q ss_pred CCCEEEccC
Q 006657 322 RLEYLSLRE 330 (636)
Q Consensus 322 ~L~~L~L~~ 330 (636)
+|+.+.+..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 666665543
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.11 E-value=0.0004 Score=70.26 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=53.6
Q ss_pred cccccEEECcCCccCc--cCCcccccccCCCeEeCCCccCcCCC-----CccccCCCCCCEEeCCCCCCCc-cCchhccC
Q 006657 451 LKLVRCMDLSGNNLSG--DIPEEMTNLLALQSLNLSHNFLAGKI-----PENVGAMRSLESIDFSGNLLSG-RIPQSISS 522 (636)
Q Consensus 451 ~~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~i-----p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~ 522 (636)
.+.|+.+|+.++...- .+-..-.+++.|+.|.|+++.+.... ...-..+..|+.+.|+++.... ..-..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 3446777777665431 12222356788888888888653221 1222456778899999987642 23345667
Q ss_pred CCCCCeeeccCCcCc
Q 006657 523 LTFLSHLNLSDNNLT 537 (636)
Q Consensus 523 l~~L~~L~ls~N~l~ 537 (636)
++.|+.+++-+++-.
T Consensus 425 c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 425 CRNLERIELIDCQDV 439 (483)
T ss_pred Ccccceeeeechhhh
Confidence 778888887776543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.00031 Score=67.29 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccccc
Q 006657 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194 (636)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 194 (636)
+.+.+.|+.-++.+.+. ..+..|+.|++|.|+-|.++..- .+..|++|++|.|..|.+.++ ..+..+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl-------dEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL-------DELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH-------HHHHHHh
Confidence 44566677777776644 23445677777777777666332 245566666666666655332 2233344
Q ss_pred CCCCCcEEEccCCC
Q 006657 195 GLSLLKHLDLTGVD 208 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~ 208 (636)
++++|+.|-|..|.
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 55555555544443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0069 Score=34.70 Aligned_cols=7 Identities=86% Similarity=1.327 Sum_probs=2.5
Q ss_pred EECcCCc
Q 006657 457 MDLSGNN 463 (636)
Q Consensus 457 L~Ls~N~ 463 (636)
|||++|+
T Consensus 5 Ldls~n~ 11 (22)
T PF00560_consen 5 LDLSGNN 11 (22)
T ss_dssp EEETSSE
T ss_pred EECCCCc
Confidence 3333333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.05 E-value=0.0085 Score=34.30 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=12.5
Q ss_pred CCCEEEccCCccCCCCCccCcC
Q 006657 142 SLRHIDLSRAELTGMIPHQLGN 163 (636)
Q Consensus 142 ~L~~L~L~~n~l~~~~p~~l~~ 163 (636)
+|++||+++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55655543
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.68 E-value=0.0058 Score=66.68 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCCCCEEeCCCCC-CCCCCCchhhcCCCCCCEEEccC
Q 006657 115 LKHLVYLDLSNNN-FENNQIPVFLGFMGSLRHIDLSR 150 (636)
Q Consensus 115 l~~L~~L~Ls~n~-l~~~~ip~~l~~l~~L~~L~L~~ 150 (636)
.+.|+.|.+.... +....+-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555443 22111223334455566666554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.46 E-value=0.01 Score=64.70 Aligned_cols=116 Identities=27% Similarity=0.236 Sum_probs=71.6
Q ss_pred CccccCCCCCCEEeCCCC-C-CCCC--CCchhhcCCCCCCEEEccCCc-cCCCCCccCcC-CCCCCeEeccCCC-CCCcc
Q 006657 109 NPSLLDLKHLVYLDLSNN-N-FENN--QIPVFLGFMGSLRHIDLSRAE-LTGMIPHQLGN-LFNLQYLDLSIDT-HNPIS 181 (636)
Q Consensus 109 ~~~l~~l~~L~~L~Ls~n-~-l~~~--~ip~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~-~~~~~ 181 (636)
-+.....++|+.|+++++ . .... ........+++|+.|+++++. +++..-..+.. +++|++|.+..+. ++...
T Consensus 207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 207 DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence 345567899999999973 2 1111 122344567899999999987 55444444443 7889999877664 22221
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEee
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 231 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~ 231 (636)
+. ....+++.|++|+++++.......+.....++++|+.|.+.
T Consensus 287 l~-------~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 287 LV-------SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HH-------HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 11 12456788999999987665443333344556766665543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.38 E-value=0.00026 Score=75.93 Aligned_cols=192 Identities=28% Similarity=0.211 Sum_probs=113.0
Q ss_pred CCCCEEeCCCCCCCCCC---CchhhcCCCCCCEEEccCCccCCCCCc----cCcCC-CCCCeEeccCCCCCCcccccccc
Q 006657 116 KHLVYLDLSNNNFENNQ---IPVFLGFMGSLRHIDLSRAELTGMIPH----QLGNL-FNLQYLDLSIDTHNPISFSFLYL 187 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~---ip~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l-~~L~~L~Ls~n~~~~~~~~~~~~ 187 (636)
..+..|.|.+|.+.... +-..+...++|+.|++++|.+.+.--. .+... ..|++|++..|.+.......
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~--- 163 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP--- 163 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH---
Confidence 44888999999987652 223456678889999999988744222 22232 56777887777665432221
Q ss_pred cccccccCCCCCcEEEccCCCCCCC--CChhhhh----CCCCCCCEEEeecCCCCCCCC---CccccCCCC-CcEEEccc
Q 006657 188 ENFSWLSGLSLLKHLDLTGVDLSTA--SDWFLVT----NMLPSLQVLKLSACSLHNSLP---ELPIANFSS-LYTLDLSY 257 (636)
Q Consensus 188 ~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~----~~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~-L~~L~Ls~ 257 (636)
....+.....++.++++.|.+... ......+ ....++++|++.+|.++...- ...+...+. +..|++..
T Consensus 164 -l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 -LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred -HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 112355678888888888877533 1111122 246678888888887763110 011233344 55677777
Q ss_pred CCCCCCCC---hhhhcCC-CCCcEEEccCCcCcccCC----ccccCCCCCCEEEccCCcCCc
Q 006657 258 NEFDNTLV---PSWLFGL-SHLVFLDLGFNSFGGPIP----DGLQNLTSLEHLDLRSNNFIS 311 (636)
Q Consensus 258 n~l~~~~~---~~~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~ 311 (636)
|.+.+... ...+..+ ..+++++++.|.++..-. ..+..++.++++.+++|.+..
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 77653211 0223334 556777777777764432 334456677777777777653
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.89 E-value=0.0021 Score=60.12 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=74.5
Q ss_pred ccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCee
Q 006657 450 MLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHL 529 (636)
Q Consensus 450 ~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 529 (636)
..+..+.||++.|++- ..-..|+-++.|..|+++.|++. ..|..++.+..+..+++.+|..+ ..|.++...+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4455889999999987 56667888899999999999998 78889999999999999999998 789999999999999
Q ss_pred eccCCcCc
Q 006657 530 NLSDNNLT 537 (636)
Q Consensus 530 ~ls~N~l~ 537 (636)
++..|++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999864
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.75 E-value=0.0073 Score=56.63 Aligned_cols=84 Identities=18% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCc
Q 006657 73 TGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAE 152 (636)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~ 152 (636)
..||+.||++.+++. .+-..++-++.|..||++.|.+. .+|..++....++++++..|.
T Consensus 41 ~kr~tvld~~s~r~v-------------------n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-------------------NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred cceeeeehhhhhHHH-------------------hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccc
Confidence 357888888776321 22234566778888899988887 578888888888888888888
Q ss_pred cCCCCCccCcCCCCCCeEeccCCCCC
Q 006657 153 LTGMIPHQLGNLFNLQYLDLSIDTHN 178 (636)
Q Consensus 153 l~~~~p~~l~~l~~L~~L~Ls~n~~~ 178 (636)
.+ ..|.+++.+++++++++..|.++
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-hCCccccccCCcchhhhccCcch
Confidence 87 78888888888888888887653
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.20 E-value=0.17 Score=26.83 Aligned_cols=6 Identities=67% Similarity=0.966 Sum_probs=2.1
Q ss_pred EeCCCc
Q 006657 481 LNLSHN 486 (636)
Q Consensus 481 L~Ls~N 486 (636)
|+|++|
T Consensus 6 L~l~~n 11 (17)
T PF13504_consen 6 LDLSNN 11 (17)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.09 E-value=0.0028 Score=68.04 Aligned_cols=191 Identities=25% Similarity=0.206 Sum_probs=124.5
Q ss_pred cCCCCCcceee----cCccccCCCCCCEEeCCCCCCCCCCCc---hhhcCC-CCCCEEEccCCccCCC----CCccCcCC
Q 006657 97 YDDETSKLIGK----INPSLLDLKHLVYLDLSNNNFENNQIP---VFLGFM-GSLRHIDLSRAELTGM----IPHQLGNL 164 (636)
Q Consensus 97 ~~~~~~~l~g~----i~~~l~~l~~L~~L~Ls~n~l~~~~ip---~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l 164 (636)
+++.+|.+... +-..+....+|+.|++++|.+.+.... ..+... ..|++|++..|.+++. +...+...
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~ 171 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN 171 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence 33444444433 334567788999999999999754222 222222 5678888888888754 45566678
Q ss_pred CCCCeEeccCCCCCCcccccccccccc-cccCCCCCcEEEccCCCCCCC--CChhhhhCCCCC-CCEEEeecCCCCCCCC
Q 006657 165 FNLQYLDLSIDTHNPISFSFLYLENFS-WLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPS-LQVLKLSACSLHNSLP 240 (636)
Q Consensus 165 ~~L~~L~Ls~n~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~-L~~L~L~~n~l~~~~p 240 (636)
..++.++++.|.+.....-... ..++ .+....++++|.++++.++.. ..+...+...+. +..|++..|.+.+..-
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~-~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLS-QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred cchhHHHHHhcccchhhhHHHh-hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 8999999999977422111000 0111 134578899999999988855 233445566666 7789999998874311
Q ss_pred C---ccccCC-CCCcEEEcccCCCCCCCC---hhhhcCCCCCcEEEccCCcCccc
Q 006657 241 E---LPIANF-SSLYTLDLSYNEFDNTLV---PSWLFGLSHLVFLDLGFNSFGGP 288 (636)
Q Consensus 241 ~---~~~~~l-~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~ 288 (636)
. ..+..+ ..+++++++.|.++..-. ...+..++.++++.++.|.+...
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 0 123344 678999999999975432 13455678999999999988743
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.61 E-value=0.67 Score=27.48 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCCCC
Q 006657 500 RSLESIDFSGNLLS 513 (636)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (636)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666655
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.61 E-value=0.67 Score=27.48 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCCCC
Q 006657 500 RSLESIDFSGNLLS 513 (636)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (636)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666655
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.08 E-value=0.74 Score=27.31 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=8.5
Q ss_pred CCCcEEEcccCCCCCCCC
Q 006657 248 SSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~ 265 (636)
++|+.|+|++|+++ .+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.08 E-value=0.74 Score=27.31 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=8.5
Q ss_pred CCCcEEEcccCCCCCCCC
Q 006657 248 SSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~ 265 (636)
++|+.|+|++|+++ .+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.60 E-value=0.53 Score=27.33 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=12.6
Q ss_pred CCCCEEEccCccCccccchhh
Q 006657 388 TSLHILDLSHNNFSGTLPRCI 408 (636)
Q Consensus 388 ~~L~~L~Ls~N~l~~~~p~~l 408 (636)
++|++|+|++|++++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 567788888887775554443
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=78.86 E-value=1.1 Score=56.77 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=38.7
Q ss_pred eCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCcccc
Q 006657 506 DFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNAS 552 (636)
Q Consensus 506 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~ 552 (636)
||++|+|+...+..|..+++|++|+|++|+|.|.|...+..+|+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~ 47 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEK 47 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence 68899999777778888999999999999999999877666665544
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.03 E-value=0.3 Score=45.22 Aligned_cols=82 Identities=23% Similarity=0.281 Sum_probs=60.2
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCC-CCcccc-CCCCCCEEeCCCC-CCCccCchhccCCCCCCeee
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK-IPENVG-AMRSLESIDFSGN-LLSGRIPQSISSLTFLSHLN 530 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~-ip~~~~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~ 530 (636)
++.+|-++..|..+--+.+.+++.++.|.+.++.--+. --+.++ -.++|+.|++++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 78899999999888778888999999999988853221 111111 3478999999988 57766666777888888888
Q ss_pred ccCCc
Q 006657 531 LSDNN 535 (636)
Q Consensus 531 ls~N~ 535 (636)
+.+=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 77543
No 86
>PF15102 TMEM154: TMEM154 protein family
Probab=74.57 E-value=2.7 Score=36.76 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=15.4
Q ss_pred eEEeeh-hhHHHHHHHHHhhhheeccchhhh
Q 006657 593 LYVSTA-FGFVVGFWCVIGPLLINRRWRYKY 622 (636)
Q Consensus 593 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 622 (636)
+++++. +.+++.++++|++++++||||.+-
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 334433 333344444555556677777643
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.16 E-value=0.83 Score=42.45 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
..++.+|-++..+..+--+.+.+++.++.|.+.+|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345666666666665555556666666666666654
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.01 E-value=4.6 Score=24.09 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=9.3
Q ss_pred CCCCEEeCCCCCCC
Q 006657 500 RSLESIDFSGNLLS 513 (636)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (636)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777777665
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.53 E-value=3.7 Score=24.45 Aligned_cols=12 Identities=50% Similarity=0.681 Sum_probs=5.5
Q ss_pred CCeEeCCCccCc
Q 006657 478 LQSLNLSHNFLA 489 (636)
Q Consensus 478 L~~L~Ls~N~l~ 489 (636)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 90
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=66.42 E-value=3 Score=36.74 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=10.2
Q ss_pred eeEEeehhhHHHHHHHHHhhhh
Q 006657 592 WLYVSTAFGFVVGFWCVIGPLL 613 (636)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~ 613 (636)
.+++++++|+.+.+++++++++
T Consensus 49 nIVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhh
Confidence 3555555554444444433333
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.89 E-value=7.1 Score=23.63 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=8.8
Q ss_pred CCCCEEeCCCCCCC
Q 006657 500 RSLESIDFSGNLLS 513 (636)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (636)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 92
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=54.86 E-value=14 Score=24.64 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=10.9
Q ss_pred eEEeehhhHHHHHHHHHhhhheecc
Q 006657 593 LYVSTAFGFVVGFWCVIGPLLINRR 617 (636)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (636)
+..++++.+++.+++++.++++++|
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEe
Confidence 3444444444444444444444333
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.09 E-value=98 Score=33.04 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=12.5
Q ss_pred CCCCEEEccCCccCCCCCccC
Q 006657 141 GSLRHIDLSRAELTGMIPHQL 161 (636)
Q Consensus 141 ~~L~~L~L~~n~l~~~~p~~l 161 (636)
+.+++++++.|.+....|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 445666666666665555444
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.43 E-value=4.3 Score=34.70 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=13.7
Q ss_pred eEEeehhhHHHHHHHHHhhhheec
Q 006657 593 LYVSTAFGFVVGFWCVIGPLLINR 616 (636)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~ 616 (636)
.++++++|++.|++++|++++|..
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665554433
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.34 E-value=15 Score=39.68 Aligned_cols=64 Identities=30% Similarity=0.126 Sum_probs=29.9
Q ss_pred CCCCCCEEEeecCCCCCCCCCcc-ccCCCCCcEEEcccC--CCCCCCChhhhcCC--CCCcEEEccCCcCcc
Q 006657 221 MLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYN--EFDNTLVPSWLFGL--SHLVFLDLGFNSFGG 287 (636)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~p~~~-~~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l--~~L~~L~L~~n~l~~ 287 (636)
+.+.+..++|++|++...-.... -...++|+.|+|++| .+... .++.++ ..|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCcccc
Confidence 45555666666665542111001 112356666666666 22211 222222 236677777776653
No 96
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=43.04 E-value=15 Score=30.09 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=7.6
Q ss_pred eEEeehhhHHHHHHHHHhh
Q 006657 593 LYVSTAFGFVVGFWCVIGP 611 (636)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~ 611 (636)
.+.+++++.++++.+++++
T Consensus 67 aiagi~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGF 85 (96)
T ss_pred cEEEEEeehhhHHHHHHHH
Confidence 3444444444333333333
No 97
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=42.71 E-value=13 Score=29.58 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=22.6
Q ss_pred ceeEEeehhhHHHHHHHHHhhhheeccchhhhhhh
Q 006657 591 YWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHF 625 (636)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (636)
+|.+++.+-|+++.++++..+++.+.||+....+.
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~~r~ 75 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHKTSAARN 75 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhhhHhhhh
Confidence 56677777777766666666666666776444443
No 98
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=39.71 E-value=85 Score=33.49 Aligned_cols=87 Identities=14% Similarity=-0.004 Sum_probs=45.4
Q ss_pred CCCcEEEcccCCCCCCCChh-hhcCCCCCcEEEccCCcCcc-cCCccc--------cCCCCCCEEEccCCcCCcccch--
Q 006657 248 SSLYTLDLSYNEFDNTLVPS-WLFGLSHLVFLDLGFNSFGG-PIPDGL--------QNLTSLEHLDLRSNNFISSIPT-- 315 (636)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~L~~n~l~~-~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~-- 315 (636)
..+++|+...|++.|+.-+. ....-+..+.+++.+-.-.. ..+... ....-+..+.++.|.+....-.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 35778888888776654311 22233456666664432100 001000 1123466777777776533322
Q ss_pred -hhhCCCCCCEEEccCcccc
Q 006657 316 -WLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 316 -~l~~l~~L~~L~L~~n~l~ 334 (636)
....-+.+..|++++|...
T Consensus 434 n~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred HhhccCcccccccccCCCcc
Confidence 2334467888888888654
No 99
>PF07327 Neuroparsin: Neuroparsin; InterPro: IPR010850 This family consists of several locust specific neuroparsin proteins. Neuroparsins are produced by the A1 type of protocerebral median neurosecretory cells of the PI-CC system and display pleiotropic activities: inhibition of the effect of juvenile hormone, stimulation of fluid reabsorption of isolated recta, induction of an increase in hemolymph lipid and trehalose levels, and neurotrophic effects [].
Probab=37.98 E-value=44 Score=26.95 Aligned_cols=32 Identities=25% Similarity=0.091 Sum_probs=18.6
Q ss_pred ChhhHHHHHHHHHHHHHhhhhccCCCCCCCCC
Q 006657 1 MKLAIALLLLELLALANIKIGYCNGSAYIGCI 32 (636)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (636)
||.++|+..+.++++..+..-+.++..+..|.
T Consensus 1 ~k~~~al~aatLl~~V~Lf~~~~~~p~sr~c~ 32 (103)
T PF07327_consen 1 MKPAAALAAATLLIAVILFHRAEANPISRSCE 32 (103)
T ss_pred CchHHHHHHHHHHHHHHHHhccccCCcccccc
Confidence 88888777765555555444444444444444
No 100
>PTZ00370 STEVOR; Provisional
Probab=37.01 E-value=14 Score=36.23 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=12.4
Q ss_pred HHHHHhhhheeccchhhhhhh
Q 006657 605 FWCVIGPLLINRRWRYKYCHF 625 (636)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~ 625 (636)
++++|..+|.+||++..|+|-
T Consensus 269 vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 269 VVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHhhcchhHHH
Confidence 344445556677777777653
No 101
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.67 E-value=18 Score=39.14 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=34.0
Q ss_pred ccccccEEECcCCccCcc--CCcccccccCCCeEeCCCc--cCcCCCCccccCC--CCCCEEeCCCCCCCc
Q 006657 450 MLKLVRCMDLSGNNLSGD--IPEEMTNLLALQSLNLSHN--FLAGKIPENVGAM--RSLESIDFSGNLLSG 514 (636)
Q Consensus 450 ~~~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~Ls~N--~l~~~ip~~~~~l--~~L~~L~Ls~N~l~~ 514 (636)
+.+.+..+.|++|++... +...-...+.|..|+|++| .+.. ..++..+ ..|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 345567777888877521 1111233466777777777 3321 1122222 346777777777654
No 102
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.83 E-value=14 Score=36.28 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=10.5
Q ss_pred HHHHhhhheeccchhhhhh
Q 006657 606 WCVIGPLLINRRWRYKYCH 624 (636)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~ 624 (636)
+++|..+|.+||++..|+|
T Consensus 274 vliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 274 VLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHhhcccccc
Confidence 3344445556666666654
No 103
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=33.77 E-value=30 Score=22.95 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=4.7
Q ss_pred hheeccchhh
Q 006657 612 LLINRRWRYK 621 (636)
Q Consensus 612 ~~~~~~~~~~ 621 (636)
.+.+++|..|
T Consensus 27 ~~iYRKw~aR 36 (43)
T PF08114_consen 27 LFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHH
Confidence 3445556433
No 104
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.63 E-value=49 Score=31.13 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=10.6
Q ss_pred ceeEEeehhhHHHHHHHHHhhh
Q 006657 591 YWLYVSTAFGFVVGFWCVIGPL 612 (636)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~ 612 (636)
..++++++.|++.+++++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVV 58 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHH
Confidence 4455555555554444333333
No 105
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=26.75 E-value=83 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.0
Q ss_pred HHhhhheeccchhhhhhhHHhhhhe
Q 006657 608 VIGPLLINRRWRYKYCHFLDRIIAK 632 (636)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (636)
+...++..++-|-+++.++++.|.+
T Consensus 23 lAlPvMLf~~dRArfYSyLhrvW~K 47 (63)
T PF10725_consen 23 LALPVMLFRSDRARFYSYLHRVWSK 47 (63)
T ss_pred hhhheeeeecchhHHHHHHHHHHHh
Confidence 3334445567889999999998864
No 106
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.31 E-value=46 Score=19.48 Aligned_cols=11 Identities=55% Similarity=0.304 Sum_probs=5.1
Q ss_pred CCCCeEeccCC
Q 006657 165 FNLQYLDLSID 175 (636)
Q Consensus 165 ~~L~~L~Ls~n 175 (636)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 107
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=24.53 E-value=29 Score=26.65 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=5.8
Q ss_pred CCCCCCccc
Q 006657 56 WSDGNCCTW 64 (636)
Q Consensus 56 W~~~~~c~w 64 (636)
|...+||+|
T Consensus 59 ~~~~~CC~~ 67 (75)
T PF02950_consen 59 KRNSECCSG 67 (75)
T ss_dssp TTTTCBSSS
T ss_pred CCCCCCCCC
Confidence 335677877
No 108
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.87 E-value=32 Score=22.53 Aligned_cols=8 Identities=38% Similarity=0.621 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q 006657 598 AFGFVVGF 605 (636)
Q Consensus 598 ~~~~~~~~ 605 (636)
++++++|+
T Consensus 9 Iv~V~vg~ 16 (38)
T PF02439_consen 9 IVAVVVGM 16 (38)
T ss_pred HHHHHHHH
Confidence 33344443
No 109
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=23.69 E-value=29 Score=26.86 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHhhhheeccc
Q 006657 599 FGFVVGFWCVIGPLLINRRW 618 (636)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~ 618 (636)
+|+++.+++++.++++++|.
T Consensus 8 ~g~~~ll~~v~~~~~~~rr~ 27 (75)
T PF14575_consen 8 VGVLLLLVLVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHCCCTT-
T ss_pred HHHHHHHHhheeEEEEEeeE
Confidence 33333333333334444333
No 110
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=22.66 E-value=63 Score=27.56 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.2
Q ss_pred ccCCCC
Q 006657 538 GKIPLG 543 (636)
Q Consensus 538 g~ip~~ 543 (636)
+.+|.+
T Consensus 34 ~~Cp~G 39 (129)
T PF12191_consen 34 TPCPRG 39 (129)
T ss_dssp SSS-SS
T ss_pred CCCCCC
Confidence 344443
No 111
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.13 E-value=45 Score=23.51 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=9.7
Q ss_pred hhheeccchhhhhhhHHh
Q 006657 611 PLLINRRWRYKYCHFLDR 628 (636)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~ 628 (636)
+.+..-.++..|++..++
T Consensus 18 ~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 18 LSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHhhccccccccCC
Confidence 333344455666666655
No 112
>PRK00523 hypothetical protein; Provisional
Probab=20.42 E-value=33 Score=26.10 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhhhheeccchhhhhh
Q 006657 599 FGFVVGFWCVIGPLLINRRWRYKYCH 624 (636)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (636)
++++..++.+++.+++.|++-.+|..
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445556666666555543
Done!