Query 006657
Match_columns 636
No_of_seqs 656 out of 5134
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.8E-69 1.6E-73 618.3 37.0 535 30-571 8-751 (768)
2 4eco_A Uncharacterized protein 100.0 1.6E-53 5.6E-58 478.5 29.7 427 30-538 26-601 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2E-52 6.8E-57 477.9 34.6 426 28-539 263-842 (876)
4 3rgz_A Protein brassinosteroid 100.0 3.4E-50 1.2E-54 461.7 26.3 458 74-541 200-744 (768)
5 3t6q_A CD180 antigen; protein- 100.0 2.2E-47 7.5E-52 428.0 32.3 470 64-549 14-572 (606)
6 3t6q_A CD180 antigen; protein- 100.0 3.5E-46 1.2E-50 418.2 34.5 472 78-569 16-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 7.7E-47 2.6E-51 438.3 26.6 481 62-569 14-589 (844)
8 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-45 2.1E-49 413.7 39.1 453 74-539 25-599 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-44 4.1E-49 405.8 35.3 440 74-550 32-571 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-43 1.1E-47 399.5 38.8 465 74-550 49-636 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-43 4.9E-48 397.0 35.3 419 89-543 29-539 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 9.7E-44 3.3E-48 393.6 30.1 454 61-543 3-516 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.4E-43 4.6E-48 394.2 28.8 440 75-550 29-545 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-43 8.8E-48 408.7 30.9 458 90-569 22-564 (844)
15 4eco_A Uncharacterized protein 100.0 1.2E-43 3.9E-48 398.5 21.4 409 116-557 81-597 (636)
16 3v47_A TOLL-like receptor 5B a 100.0 4.8E-42 1.6E-46 370.9 28.7 373 116-546 30-417 (455)
17 2z7x_B TOLL-like receptor 1, v 100.0 9.5E-43 3.3E-47 383.0 23.0 424 78-545 4-489 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 5.9E-42 2E-46 391.5 23.6 394 116-557 323-837 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-41 1.1E-45 379.9 29.0 433 88-550 48-593 (635)
20 1ogq_A PGIP-2, polygalacturona 100.0 3E-41 1E-45 345.7 20.1 224 30-334 2-234 (313)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-40 4.5E-45 369.3 26.9 450 77-570 34-546 (562)
22 2z63_A TOLL-like receptor 4, v 100.0 2.3E-40 8E-45 368.1 28.3 443 87-569 23-535 (570)
23 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-40 1.8E-44 361.1 28.0 424 95-569 3-485 (520)
24 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-39 7.6E-44 358.6 28.0 400 107-541 19-490 (549)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.7E-38 1.9E-42 348.1 30.5 424 95-569 34-514 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 2.6E-37 9E-42 333.8 30.6 367 119-557 13-405 (455)
27 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-37 1.5E-41 330.8 29.2 349 74-543 42-393 (457)
28 1jl5_A Outer protein YOPM; leu 100.0 3.6E-37 1.2E-41 331.1 28.0 368 74-542 11-416 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 3.2E-37 1.1E-41 335.2 26.5 346 119-563 14-360 (477)
30 1o6v_A Internalin A; bacterial 100.0 8E-36 2.7E-40 323.0 34.2 347 74-542 46-392 (466)
31 4g8a_A TOLL-like receptor 4; l 100.0 7E-36 2.4E-40 336.1 31.7 436 107-569 45-584 (635)
32 3o6n_A APL1; leucine-rich repe 100.0 2.6E-36 8.7E-41 319.3 24.4 333 113-561 42-376 (390)
33 3oja_B Anopheles plasmodium-re 100.0 9.8E-36 3.4E-40 332.1 26.3 335 114-563 49-384 (597)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-35 4.9E-40 318.9 26.5 340 105-561 31-388 (457)
35 1jl5_A Outer protein YOPM; leu 100.0 9.6E-36 3.3E-40 320.0 24.6 352 114-543 9-378 (454)
36 1o6v_A Internalin A; bacterial 100.0 2E-34 7E-39 311.9 33.3 349 113-563 43-391 (466)
37 2id5_A Lingo-1, leucine rich r 100.0 8.7E-35 3E-39 316.0 28.9 271 107-411 25-295 (477)
38 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-34 4.3E-39 296.5 18.7 257 249-568 51-312 (313)
39 4fmz_A Internalin; leucine ric 100.0 5.7E-33 1.9E-37 288.8 29.5 307 112-537 40-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5.1E-37 285.6 30.0 304 137-557 40-343 (347)
41 4fcg_A Uncharacterized protein 100.0 1.5E-33 5E-38 290.3 15.2 279 28-334 21-314 (328)
42 3o6n_A APL1; leucine-rich repe 100.0 6.6E-32 2.3E-36 285.4 25.3 331 94-541 47-378 (390)
43 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.8E-36 296.8 25.5 310 94-517 53-362 (597)
44 1xku_A Decorin; proteoglycan, 100.0 2.1E-30 7.3E-35 267.4 28.4 199 274-535 122-330 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 1E-34 3.5E-39 314.0 -4.7 279 116-402 3-327 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1E-30 3.6E-35 269.9 24.4 199 273-535 123-331 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.4E-30 1.5E-34 265.2 23.8 243 117-401 34-277 (332)
48 1xku_A Decorin; proteoglycan, 100.0 2.9E-29 9.9E-34 258.9 28.2 245 117-402 32-277 (330)
49 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-33 1.1E-37 302.2 -3.5 359 140-539 2-413 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 3.1E-29 1.1E-33 261.2 18.6 270 107-405 45-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 6.2E-29 2.1E-33 253.5 16.6 259 200-549 10-273 (306)
52 4fcg_A Uncharacterized protein 100.0 4.9E-28 1.7E-32 249.1 20.4 233 249-537 82-314 (328)
53 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4.2E-33 256.6 15.3 273 201-542 35-319 (353)
54 3zyj_A Leucine-rich repeat-con 100.0 5.7E-28 1.9E-32 259.3 20.6 260 198-548 44-303 (440)
55 2z66_A Variable lymphocyte rec 100.0 3.5E-28 1.2E-32 248.0 18.0 278 167-542 9-292 (306)
56 3zyi_A Leucine-rich repeat-con 100.0 6.2E-28 2.1E-32 260.0 19.8 255 199-545 56-311 (452)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-27 4.6E-32 241.0 17.3 244 226-557 14-258 (285)
58 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-26 6.6E-31 255.2 22.7 289 54-414 13-310 (622)
59 3ogk_B Coronatine-insensitive 99.9 9.5E-30 3.3E-34 284.0 -4.6 376 114-539 110-528 (592)
60 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-27 3.1E-31 234.9 17.5 254 199-543 13-267 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 7.7E-26 2.6E-30 242.7 25.0 228 92-334 64-292 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 7.1E-26 2.4E-30 243.9 24.0 207 166-408 55-262 (452)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-25 4.3E-30 248.7 26.3 269 116-524 40-308 (622)
64 1wwl_A Monocyte differentiatio 99.9 2.6E-28 9E-33 249.5 4.3 134 363-538 172-310 (312)
65 3ogk_B Coronatine-insensitive 99.9 2.1E-29 7E-34 281.3 -6.2 400 107-558 64-524 (592)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-27 4.9E-32 244.6 6.4 243 247-542 33-281 (317)
67 1wwl_A Monocyte differentiatio 99.9 7.2E-28 2.5E-32 246.2 3.9 265 53-334 21-309 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1E-27 3.5E-32 245.7 3.2 207 102-334 20-227 (317)
69 3oja_A Leucine-rich immune mol 99.9 2.7E-26 9.1E-31 248.9 12.8 231 249-532 35-270 (487)
70 2o6q_A Variable lymphocyte rec 99.9 1.6E-24 5.5E-29 216.6 22.3 217 59-334 2-218 (270)
71 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.1E-29 218.2 19.4 211 249-544 29-244 (276)
72 3oja_A Leucine-rich immune mol 99.9 4.3E-25 1.5E-29 239.4 16.8 216 273-538 34-251 (487)
73 2o6q_A Variable lymphocyte rec 99.9 9.5E-24 3.2E-28 211.0 21.0 140 363-542 84-223 (270)
74 2p1m_B Transport inhibitor res 99.9 4.3E-27 1.5E-31 262.5 -4.5 376 114-537 103-519 (594)
75 1p9a_G Platelet glycoprotein I 99.9 1.6E-23 5.6E-28 211.3 19.7 208 269-542 6-213 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 2.7E-23 9.2E-28 208.4 20.1 231 200-517 10-241 (276)
77 2p1m_B Transport inhibitor res 99.9 6.4E-27 2.2E-31 261.1 -8.3 391 94-537 107-544 (594)
78 3rfs_A Internalin B, repeat mo 99.9 6.1E-24 2.1E-28 212.6 11.8 204 270-543 38-241 (272)
79 3goz_A Leucine-rich repeat-con 99.9 1.1E-23 3.6E-28 220.0 10.5 256 228-539 3-299 (362)
80 1p9a_G Platelet glycoprotein I 99.9 3.9E-22 1.3E-26 201.2 21.5 204 111-334 5-208 (290)
81 3rfs_A Internalin B, repeat mo 99.9 4.7E-23 1.6E-27 206.2 14.5 39 454-499 207-245 (272)
82 2ca6_A RAN GTPase-activating p 99.9 3.2E-24 1.1E-28 226.1 4.2 243 244-541 28-320 (386)
83 4glp_A Monocyte differentiatio 99.9 1.7E-22 5.9E-27 206.1 15.6 229 249-538 65-308 (310)
84 2ast_B S-phase kinase-associat 99.9 2.3E-23 7.9E-28 215.1 9.1 231 248-542 70-311 (336)
85 4glp_A Monocyte differentiatio 99.9 3.7E-22 1.3E-26 203.7 17.3 233 195-514 62-308 (310)
86 3goz_A Leucine-rich repeat-con 99.9 3.9E-23 1.3E-27 215.7 9.6 267 201-520 2-304 (362)
87 2ca6_A RAN GTPase-activating p 99.9 3.9E-24 1.3E-28 225.4 1.6 241 219-517 28-320 (386)
88 2ast_B S-phase kinase-associat 99.9 4.7E-23 1.6E-27 212.8 8.5 256 198-522 48-315 (336)
89 3m19_A Variable lymphocyte rec 99.9 2.7E-21 9.4E-26 190.8 19.6 95 60-179 3-97 (251)
90 3m19_A Variable lymphocyte rec 99.9 6.1E-22 2.1E-26 195.5 13.8 210 274-569 15-230 (251)
91 1h6u_A Internalin H; cell adhe 99.9 4.6E-21 1.6E-25 195.2 18.5 195 112-335 37-231 (308)
92 1h6u_A Internalin H; cell adhe 99.9 3.6E-21 1.2E-25 196.0 16.9 192 272-538 40-231 (308)
93 2xwt_C Thyrotropin receptor; s 99.9 4.6E-21 1.6E-25 187.8 15.3 198 116-332 31-237 (239)
94 2xwt_C Thyrotropin receptor; s 99.8 2.9E-21 9.8E-26 189.2 12.2 85 249-334 32-118 (239)
95 3cvr_A Invasion plasmid antige 99.8 8.8E-21 3E-25 207.4 15.1 206 55-321 35-254 (571)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-20 4.3E-25 182.0 10.8 177 343-563 15-193 (220)
97 2o6s_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 174.6 16.7 164 115-298 27-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.6E-24 188.7 17.6 125 200-330 12-137 (350)
99 3cvr_A Invasion plasmid antige 99.8 5.2E-20 1.8E-24 201.3 15.1 187 249-523 60-253 (571)
100 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6.2E-24 186.9 16.3 135 197-334 30-167 (350)
101 2v9t_B SLIT homolog 2 protein 99.8 5.2E-20 1.8E-24 177.7 11.3 163 344-550 16-178 (220)
102 2o6s_A Variable lymphocyte rec 99.8 1.9E-19 6.6E-24 172.1 14.4 83 249-332 29-111 (208)
103 3e6j_A Variable lymphocyte rec 99.8 5.4E-18 1.8E-22 164.6 18.3 162 54-261 11-172 (229)
104 3e6j_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 167.2 14.8 154 344-542 24-177 (229)
105 1h6t_A Internalin B; cell adhe 99.8 3.6E-18 1.2E-22 172.2 15.6 79 454-538 136-214 (291)
106 1m9s_A Internalin B; cell inva 99.8 2.7E-18 9.4E-23 189.7 15.6 173 112-311 39-211 (605)
107 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.6E-23 181.1 11.4 140 363-542 63-207 (361)
108 1w8a_A SLIT protein; signaling 99.8 1.5E-18 5.1E-23 163.6 10.4 155 367-564 11-167 (192)
109 1h6t_A Internalin B; cell adhe 99.8 1.1E-17 3.8E-22 168.6 16.9 172 113-335 43-214 (291)
110 1dce_A Protein (RAB geranylger 99.8 4.3E-21 1.5E-25 210.9 -8.9 86 454-542 465-551 (567)
111 4b8c_D Glucose-repressible alc 99.7 1.4E-19 4.9E-24 204.9 2.4 261 30-335 128-405 (727)
112 1m9s_A Internalin B; cell inva 99.7 2.7E-18 9.2E-23 189.8 11.2 148 225-405 23-170 (605)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-17 5.4E-22 160.2 13.9 158 299-517 13-170 (220)
114 1dce_A Protein (RAB geranylger 99.7 1.3E-20 4.4E-25 207.1 -10.6 202 272-531 348-567 (567)
115 2v9t_B SLIT homolog 2 protein 99.7 1.1E-16 3.9E-21 154.2 16.5 111 222-334 55-165 (220)
116 4b8c_D Glucose-repressible alc 99.7 4.8E-18 1.6E-22 192.4 7.1 190 254-513 207-404 (727)
117 2xot_A Amphoterin-induced prot 99.7 3.8E-17 1.3E-21 170.1 12.9 157 224-401 40-202 (361)
118 4ezg_A Putative uncharacterize 99.7 6.3E-17 2.1E-21 153.2 12.8 153 138-334 41-194 (197)
119 2wfh_A SLIT homolog 2 protein 99.7 5.6E-17 1.9E-21 152.9 11.1 140 367-550 13-152 (193)
120 4ezg_A Putative uncharacterize 99.7 1.6E-16 5.4E-21 150.4 13.9 154 220-402 41-195 (197)
121 1xeu_A Internalin C; cellular 99.7 2.1E-17 7.3E-22 163.9 6.5 82 246-334 17-98 (263)
122 1xeu_A Internalin C; cellular 99.7 6.6E-17 2.3E-21 160.3 9.7 170 114-335 17-186 (263)
123 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.6E-21 150.9 10.1 155 343-542 12-167 (192)
124 3sb4_A Hypothetical leucine ri 99.7 3.7E-17 1.3E-21 167.9 7.4 220 247-531 100-328 (329)
125 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.3E-20 139.2 13.3 134 366-542 9-142 (177)
126 2ell_A Acidic leucine-rich nuc 99.6 9.3E-16 3.2E-20 141.1 9.1 132 364-537 24-160 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 8.3E-16 2.8E-20 138.4 8.4 129 363-533 16-149 (149)
128 2ell_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 141.6 8.1 137 338-518 23-164 (168)
129 3sb4_A Hypothetical leucine ri 99.6 1.4E-15 4.8E-20 156.1 8.2 219 222-507 100-328 (329)
130 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.6E-19 129.8 9.6 108 223-334 17-126 (149)
131 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 127.7 15.2 130 199-335 9-138 (177)
132 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 129.9 14.8 127 200-334 13-139 (193)
133 3g39_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 128.6 11.1 90 453-542 31-120 (170)
134 1ds9_A Outer arm dynein; leuci 99.5 8.1E-16 2.8E-20 145.6 -4.1 161 317-537 14-185 (198)
135 2r9u_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 125.9 11.0 90 453-542 34-123 (174)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-13 5.7E-18 126.9 10.2 133 193-334 15-153 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.4 7.7E-14 2.6E-18 129.3 7.3 130 363-538 18-154 (176)
138 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.2E-20 143.2 -3.9 64 269-334 14-83 (198)
139 4fdw_A Leucine rich hypothetic 99.4 4.3E-12 1.5E-16 133.2 19.2 241 224-536 136-382 (401)
140 4fdw_A Leucine rich hypothetic 99.4 1.2E-11 4.2E-16 129.7 19.2 220 224-513 158-383 (401)
141 3g39_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 118.1 12.0 110 365-517 10-119 (170)
142 2r9u_A Variable lymphocyte rec 99.3 5.8E-12 2E-16 116.2 11.9 106 367-515 15-120 (174)
143 4fs7_A Uncharacterized protein 99.3 2.8E-11 9.7E-16 127.2 18.3 61 111-174 66-126 (394)
144 3un9_A NLR family member X1; l 99.3 3.4E-13 1.2E-17 140.2 1.0 68 453-520 184-259 (372)
145 2ifg_A High affinity nerve gro 99.3 2.5E-12 8.7E-17 132.8 7.4 90 454-544 33-123 (347)
146 4fs7_A Uncharacterized protein 99.2 1.5E-10 5E-15 121.7 18.2 312 135-534 65-376 (394)
147 3un9_A NLR family member X1; l 99.2 1.9E-12 6.6E-17 134.5 0.2 140 364-538 101-253 (372)
148 2ifg_A High affinity nerve gro 99.2 3.9E-11 1.3E-15 123.8 9.2 132 368-542 12-146 (347)
149 4gt6_A Cell surface protein; l 99.0 4.3E-08 1.5E-12 102.7 21.2 61 470-534 328-388 (394)
150 4gt6_A Cell surface protein; l 98.9 9.6E-08 3.3E-12 100.1 21.2 316 111-513 58-391 (394)
151 2ra8_A Uncharacterized protein 98.8 2.1E-09 7.2E-14 110.7 4.9 14 247-260 251-264 (362)
152 2ra8_A Uncharacterized protein 98.7 2.9E-08 1E-12 102.1 8.4 65 340-404 253-323 (362)
153 4h09_A Hypothetical leucine ri 98.4 1.6E-05 5.6E-10 82.4 21.8 62 470-532 280-341 (379)
154 4h09_A Hypothetical leucine ri 98.4 1E-05 3.6E-10 84.0 20.2 55 453-508 287-341 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 6.7E-08 2.3E-12 89.7 2.6 85 453-537 66-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.3E-08 4.5E-13 94.5 -2.4 103 105-211 25-137 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.3E-07 1.1E-11 89.5 5.4 65 451-517 169-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 1.4E-07 4.7E-12 92.2 0.9 84 457-542 148-238 (267)
159 3e4g_A ATP synthase subunit S, 97.8 2.9E-06 1E-10 76.8 0.3 83 453-535 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.6E-05 5.6E-10 71.9 3.3 83 249-332 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 6E-05 2.1E-09 65.0 5.0 68 480-549 12-80 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00048 1.6E-08 63.5 3.3 84 453-536 71-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00029 9.8E-09 65.0 -0.1 71 108-178 33-111 (197)
164 3rfe_A Platelet glycoprotein I 96.3 0.0071 2.4E-07 51.8 6.7 57 455-513 11-68 (130)
165 2ks1_B Epidermal growth factor 50.1 3.7 0.00013 27.1 0.2 12 609-620 29-40 (44)
166 2l2t_A Receptor tyrosine-prote 42.7 5.6 0.00019 26.2 0.2 12 610-621 29-40 (44)
167 2k1k_A Ephrin type-A receptor 40.6 9.4 0.00032 24.3 1.0 20 594-613 13-32 (38)
168 2jwa_A Receptor tyrosine-prote 37.4 3.7 0.00013 27.0 -1.3 10 610-619 30-39 (44)
169 2lz0_A Uncharacterized protein 27.1 70 0.0024 25.1 4.3 38 267-305 14-51 (100)
170 2l9u_A Receptor tyrosine-prote 25.8 22 0.00076 21.6 0.8 21 598-618 13-33 (40)
171 2lz0_A Uncharacterized protein 23.4 1.7E+02 0.0058 22.8 6.0 45 464-509 8-52 (100)
172 2klu_A T-cell surface glycopro 21.8 22 0.00075 25.4 0.3 18 597-614 12-29 (70)
173 2l6w_A Beta-type platelet-deri 24.9 23 0.00078 22.4 0.0 12 611-622 27-38 (39)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-69 Score=618.34 Aligned_cols=535 Identities=30% Similarity=0.395 Sum_probs=354.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCcccccEEeCCCCCcEEEEEcCCCCCCCC---CC--------------
Q 006657 30 GCIQSERKALLRFKQDLKDPANRLASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDD---EP-------------- 91 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~-~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~---~~-------------- 91 (636)
.+.++|++||++||+++.||. .+++|+ +.|||.|+||+|+ +|||++|+|++..+.+. .+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 346789999999999999888 899997 7899999999998 58999999999887664 11
Q ss_pred ---------------ccccccCCCCCcceeecCc--cccCCCCCCEEeCCCCCCCCCCCchhh-cCCCCCCEEEccCCcc
Q 006657 92 ---------------FWLEDYDDETSKLIGKINP--SLLDLKHLVYLDLSNNNFENNQIPVFL-GFMGSLRHIDLSRAEL 153 (636)
Q Consensus 92 ---------------~~l~~~~~~~~~l~g~i~~--~l~~l~~L~~L~Ls~n~l~~~~ip~~l-~~l~~L~~L~L~~n~l 153 (636)
..++.+++++|.+.|.+|. .++++++|++|++++|.+.+. +|..+ .++++|++|++++|++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCC
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCcc
Confidence 2456778888999998888 888888888888888877654 44332 3444444444444444
Q ss_pred CCCCCcc-------------------------CcCCCCCCeEeccCCCCCCcccccc---------------cccccccc
Q 006657 154 TGMIPHQ-------------------------LGNLFNLQYLDLSIDTHNPISFSFL---------------YLENFSWL 193 (636)
Q Consensus 154 ~~~~p~~-------------------------l~~l~~L~~L~Ls~n~~~~~~~~~~---------------~~~~l~~l 193 (636)
++..|.. +.++++|++|++++|.+........ .......+
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH
Confidence 3332221 1344455555555554433211000 00001124
Q ss_pred cCCCCCcEEEccCCCCCCCCC--------------------hhhhhCC-CCCCCEEEeecCCCCCCCCCccccCCCCCcE
Q 006657 194 SGLSLLKHLDLTGVDLSTASD--------------------WFLVTNM-LPSLQVLKLSACSLHNSLPELPIANFSSLYT 252 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~--------------------~~~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 252 (636)
.++++|++|++++|.+++... .+..+.. +++|++|++++|.+++.+| ..++++++|++
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~ 322 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLES 322 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCccE
Confidence 445555555555554442210 0112222 2556666666666555555 45666666666
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccC---------------------------CCCCCEEEcc
Q 006657 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQN---------------------------LTSLEHLDLR 305 (636)
Q Consensus 253 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------l~~L~~L~L~ 305 (636)
|++++|.++|.+|...+.++++|++|++++|++++.+|..+.+ +++|++|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 6666666666666444666666666666666666555554433 4456666666
Q ss_pred CCcCCcccchhhhCCCCCCEEEccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc
Q 006657 306 SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ 379 (636)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~ 379 (636)
+|++++.+|..+.++++|++|++++|++++.+|. .|+.|++++|.+.|.+|..+.. +++|++|++++|++++.
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGE 481 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCc
Confidence 6666666777777777788888877777766554 4455555555555555544443 44455555555555444
Q ss_pred CccccCCCCCCCEEEccC------------------------ccCccccchhhhhhhhhccccC-----CCccccccccc
Q 006657 380 IPAELCRLTSLHILDLSH------------------------NNFSGTLPRCINNLTAMMNQEN-----SMETDKEYDTF 430 (636)
Q Consensus 380 ~p~~l~~l~~L~~L~Ls~------------------------N~l~~~~p~~l~~l~~L~~~~~-----~~~~~~~~~~~ 430 (636)
+|..+..+++|++|++++ |+++|.+|..+.++++|+.++. .+.+|......
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 444444444444444444 4444444444444444444332 12223221110
Q ss_pred e------eec-------------------------------------------eEEEEeeccccccccccccccEEECcC
Q 006657 431 T------IEL-------------------------------------------SILVVMKGRELAYNTMLKLVRCMDLSG 461 (636)
Q Consensus 431 ~------~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 461 (636)
. ... .....++|..+...+.++.|++|||++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 0 000 000223455555666788999999999
Q ss_pred CccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCC
Q 006657 462 NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 462 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
|+++|.+|..++++++|++|+|++|+++|.+|..++.+++|++|||++|+++|.+|..+..+++|++||+++|+++|.||
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCccccccCCC-CCCCCCCCCCCCCC
Q 006657 542 LGTQLQGFNASCFAGN-NLCGAPLPKNCTDQ 571 (636)
Q Consensus 542 ~~~~~~~~~~~~~~~n-~lc~~~~~~~c~~~ 571 (636)
.+++++++...+|.|| +|||.|+. .|...
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999 99999987 89733
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-53 Score=478.54 Aligned_cols=427 Identities=19% Similarity=0.251 Sum_probs=304.2
Q ss_pred CCCHHHHHHHHHHhhcCCCCC--------CCCCCCC-CCCCccc---ccEEeCCCCCcEEEEEcCCCCCCCCCCcccccc
Q 006657 30 GCIQSERKALLRFKQDLKDPA--------NRLASWS-DGNCCTW---AGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDY 97 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~~--------~~l~~W~-~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~ 97 (636)
+....|+.||.++++++.++. ...++|+ +.+||.| .||+|+.. |||++|+|+++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~------------- 91 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGF------------- 91 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTS-------------
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCc-------------
Confidence 344679999999999985442 2345898 7899999 99999864 89999999987
Q ss_pred CCCCCcceeecCccccCCCCCCEEeCCCCCC------CC-----------------------------------------
Q 006657 98 DDETSKLIGKINPSLLDLKHLVYLDLSNNNF------EN----------------------------------------- 130 (636)
Q Consensus 98 ~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l------~~----------------------------------------- 130 (636)
++.|.+|++++++++|++|+|++|.+ .+
T Consensus 92 -----~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 92 -----GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp -----CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred -----ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 88999999999999999999999954 11
Q ss_pred -----------------------------CCCchhhcCCCCCCEEEccCCccCCC-----------------CCccCc--
Q 006657 131 -----------------------------NQIPVFLGFMGSLRHIDLSRAELTGM-----------------IPHQLG-- 162 (636)
Q Consensus 131 -----------------------------~~ip~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~-- 162 (636)
..+|..++++++|++|++++|++++. +|..++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~ 246 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhc
Confidence 01566677777777777777777764 777777
Q ss_pred CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCC-CCChhhhhCC------CCCCCEEEeecCC
Q 006657 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LST-ASDWFLVTNM------LPSLQVLKLSACS 234 (636)
Q Consensus 163 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~~------l~~L~~L~L~~n~ 234 (636)
++++|++|++++|.+.+. +| ..+.++++|++|++++|. +++ . ++..++. +++|++|++++|+
T Consensus 247 ~l~~L~~L~L~~n~l~~~-~p-------~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK-LP-------TFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp GCTTCCEEEEECCTTCSS-CC-------TTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCCCCEEEecCCcCCcc-Ch-------HHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCc
Confidence 777777777777765442 11 226677777777777776 665 2 1223333 3777777777777
Q ss_pred CCCCCCCc--cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC-CCEEEccCCcCCc
Q 006657 235 LHNSLPEL--PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS-LEHLDLRSNNFIS 311 (636)
Q Consensus 235 l~~~~p~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~ 311 (636)
++ .+| . .++++++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+.++++ |++|++++|+++
T Consensus 317 l~-~ip-~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 317 LK-TFP-VETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp CS-SCC-CHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CC-ccC-chhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 77 666 4 57777777777777777776666 5667777777777777777 66777777777 777777777777
Q ss_pred ccchhhhCCC--CCCEEEccCcccccccCc-------------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 312 SIPTWLHKFT--RLEYLSLRENRLQGMISS-------------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 312 ~~p~~l~~l~--~L~~L~L~~n~l~~~~p~-------------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
.+|..+...+ +|++|++++|++++.+|. .|+.|++++|.++ .+|..++..+++|++|++++|++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC
Confidence 5666665543 677777777777765442 5667777777777 66666665567777777777777
Q ss_pred cccCccccCCC--------CCCCEEEccCccCccccchhhh--hhhhhccccCCCccccccccceeeceEEEEeeccccc
Q 006657 377 DGQIPAELCRL--------TSLHILDLSHNNFSGTLPRCIN--NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446 (636)
Q Consensus 377 ~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (636)
+ .+|...... ++|++|++++|+++ .+|..+. .++
T Consensus 470 ~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~---------------------------------- 513 (636)
T 4eco_A 470 T-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP---------------------------------- 513 (636)
T ss_dssp S-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT----------------------------------
T ss_pred C-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC----------------------------------
Confidence 7 555443321 26777777777777 5665443 333
Q ss_pred cccccccccEEECcCCccCccCCcccccccCCCeEeC------CCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL------SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 447 ~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
+|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..++.+++|++|+|++|++ +.+|..+
T Consensus 514 ------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 514 ------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp ------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred ------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 36777888888776 7777777788888877 45667777777777777888888888877 4677665
Q ss_pred cCCCCCCeeeccCCcCcc
Q 006657 521 SSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 521 ~~l~~L~~L~ls~N~l~g 538 (636)
. ++|++|++++|++.+
T Consensus 586 ~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 586 T--PNISVLDIKDNPNIS 601 (636)
T ss_dssp C--TTCCEEECCSCTTCE
T ss_pred h--CcCCEEECcCCCCcc
Confidence 4 677788888887764
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-52 Score=477.85 Aligned_cols=426 Identities=19% Similarity=0.250 Sum_probs=356.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCCC-C-----CCC--ccc------------ccEEeCCCCCcEEEEEcCCCCCC
Q 006657 28 YIGCIQSERKALLRFKQDLKDPANRLASWS-D-----GNC--CTW------------AGVVCNDSTGRVLELRLGNPFLH 87 (636)
Q Consensus 28 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~-~-----~~~--c~w------------~gv~C~~~~~~v~~L~L~~~~l~ 87 (636)
..++..+|+.||++||+++.+| +|+ + .+| |.| .||+|+. .+||++|+|+++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--- 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--- 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence 3455678999999999999776 786 2 256 999 9999986 689999999987
Q ss_pred CCCCccccccCCCCCcceeecCccccCCCCCCEEeC-CCCCCCCC-----------------------------------
Q 006657 88 DDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDL-SNNNFENN----------------------------------- 131 (636)
Q Consensus 88 ~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~L-s~n~l~~~----------------------------------- 131 (636)
++.|.+|+++++|++|++|+| ++|.++|.
T Consensus 334 ---------------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 334 ---------------GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp ---------------CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred ---------------CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 899999999999999999999 77743221
Q ss_pred ----------------------------------------CCchhhcCCCCCCEEEccCCccCC----------------
Q 006657 132 ----------------------------------------QIPVFLGFMGSLRHIDLSRAELTG---------------- 155 (636)
Q Consensus 132 ----------------------------------------~ip~~l~~l~~L~~L~L~~n~l~~---------------- 155 (636)
.+|..++++++|++|+|++|++++
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 078889999999999999999998
Q ss_pred -CCCccCc--CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCC--CCChhh----hhCCCCCC
Q 006657 156 -MIPHQLG--NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LST--ASDWFL----VTNMLPSL 225 (636)
Q Consensus 156 -~~p~~l~--~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~--~~~~~~----~~~~l~~L 225 (636)
.+|..++ ++++|++|++++|.+.+. +| ..+.++++|++|++++|. +++ .|.... .+..+++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP-------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQ-LP-------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCS-CC-------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCcc-Ch-------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 3899988 999999999999976542 12 237889999999999998 876 332111 23456799
Q ss_pred CEEEeecCCCCCCCCCc--cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC-CCEE
Q 006657 226 QVLKLSACSLHNSLPEL--PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS-LEHL 302 (636)
Q Consensus 226 ~~L~L~~n~l~~~~p~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L 302 (636)
++|++++|+++ .+| . .+.++++|+.|++++|.++ .+| .++.+++|++|++++|+++ .+|..+.++++ |++|
T Consensus 551 ~~L~Ls~N~L~-~ip-~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFP-ASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CEEECCSSCCC-BCC-CHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred cEEEeeCCcCC-ccC-ChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 99999999998 888 5 7899999999999999998 776 7889999999999999998 88888999998 9999
Q ss_pred EccCCcCCcccchhhhCCCC--CCEEEccCcccccccCc-----------cceEEEccCCCCccccchHHHHhhhcCceE
Q 006657 303 DLRSNNFISSIPTWLHKFTR--LEYLSLRENRLQGMISS-----------VLVVFDIGENGFSGNIPAWIGEKLLRNLIL 369 (636)
Q Consensus 303 ~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~-----------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L 369 (636)
++++|+++ .+|..+..++. |++|++++|++.+.+|. .|+.|++++|.+. .+|..++..+++|+.|
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI 702 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence 99999988 77877776654 99999999999887652 6889999999998 7888887668999999
Q ss_pred ecCCCcCcccCccccCCC--------CCCCEEEccCccCccccchhhh--hhhhhccccCCCccccccccceeeceEEEE
Q 006657 370 RLRSNKFDGQIPAELCRL--------TSLHILDLSHNNFSGTLPRCIN--NLTAMMNQENSMETDKEYDTFTIELSILVV 439 (636)
Q Consensus 370 ~L~~n~l~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (636)
+|++|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .++
T Consensus 703 ~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~--------------------------- 753 (876)
T 4ecn_A 703 ILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP--------------------------- 753 (876)
T ss_dssp ECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT---------------------------
T ss_pred ECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC---------------------------
Confidence 99999998 667655443 28999999999998 7777654 443
Q ss_pred eeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCC------ccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 440 MKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSH------NFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 440 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~------N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
+|+.|+|++|++++ +|..++++++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++
T Consensus 754 -------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 754 -------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 38899999999997 898999999999999976 788889999999999999999999999
Q ss_pred ccCchhccCCCCCCeeeccCCcCccc
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+.+|..+. ++|+.||+++|++...
T Consensus 819 ~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 819 RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CccCHhhc--CCCCEEECCCCCCCcc
Confidence 68888765 6899999999998753
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-50 Score=461.72 Aligned_cols=458 Identities=30% Similarity=0.383 Sum_probs=352.8
Q ss_pred CcEEEEEcCCCCCCCCCC-----ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEc
Q 006657 74 GRVLELRLGNPFLHDDEP-----FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL 148 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~-----~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L 148 (636)
.+++.|+++++.+.+..+ ..++.+++++|.+.+.+|..+.++++|++|++++|.+.+. +|.. .+++|++|++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPL--PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES-CCCC--CCTTCCEEEC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCc-cCcc--ccCCCCEEEC
Confidence 468889999988877655 3567788888888888888888888888888888888764 5543 6777777777
Q ss_pred cCCccCCCCCccCcCC-CCCCeEeccCCCCCCccccccc-----------cc----cc--ccccCCCCCcEEEccCCCCC
Q 006657 149 SRAELTGMIPHQLGNL-FNLQYLDLSIDTHNPISFSFLY-----------LE----NF--SWLSGLSLLKHLDLTGVDLS 210 (636)
Q Consensus 149 ~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~~~~~~~~~~~-----------~~----~l--~~l~~l~~L~~L~Ls~n~l~ 210 (636)
++|.+++.+|..+... ++|++|++++|.+.+.....+. .. .+ ..+.++++|++|++++|.++
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 7777777777776654 7777777777765432111100 00 00 11445555555555555554
Q ss_pred CC-CChhhhhCCCC-CCCEEEeecCCCCCCCCCccccC--CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc
Q 006657 211 TA-SDWFLVTNMLP-SLQVLKLSACSLHNSLPELPIAN--FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 211 ~~-~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
+. |. .+..++ +|++|++++|.+++.+| ..+.. +++|++|++++|.+++.+| ..+.++++|++|++++|+++
T Consensus 357 ~~~p~---~l~~l~~~L~~L~Ls~N~l~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 357 GELPE---SLTNLSASLLTLDLSSNNFSGPIL-PNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp ECCCT---THHHHTTTCSEEECCSSEEEEECC-TTTTCSTTCCCCEEECCSSEEEEECC-GGGGGCTTCCEEECCSSEEE
T ss_pred ccccH---HHHhhhcCCcEEEccCCCcCCCcC-hhhhhcccCCccEEECCCCccccccC-HHHhcCCCCCEEECcCCccc
Confidence 22 22 233333 56666666666665555 33443 6778888888888887777 88899999999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc------cceEEEccCCCCccccchHHH
Q 006657 287 GPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIG 360 (636)
Q Consensus 287 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~ 360 (636)
+.+|..++++++|++|++++|++++.+|..+..+++|++|++++|++++.+|. .|+.|++++|.++|.+|.+++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 99999999999999999999999999999999999999999999999988875 789999999999999999998
Q ss_pred HhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC--------------------
Q 006657 361 EKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS-------------------- 420 (636)
Q Consensus 361 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~-------------------- 420 (636)
. +++|++|++++|+++|.+|..++.+++|++|++++|+++|.+|..+.....+......
T Consensus 512 ~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 512 R-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp G-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred c-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 6 9999999999999999999999999999999999999999999988776544332110
Q ss_pred -------------------------------CccccccccceeeceEE---EEeeccccccccccccccEEECcCCccCc
Q 006657 421 -------------------------------METDKEYDTFTIELSIL---VVMKGRELAYNTMLKLVRCMDLSGNNLSG 466 (636)
Q Consensus 421 -------------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g 466 (636)
+.++..+........+. ..+.|.++..++.++.|+.|+|++|+++|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 00111111111111111 24567888899999999999999999999
Q ss_pred cCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCC
Q 006657 467 DIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 467 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
.+|..++++++|++|||++|+++|.+|..++.+++|++||+++|+++|.+|.. ..+..+....+.+|+--|-.|
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence 99999999999999999999999999999999999999999999999999975 455667777888998555334
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-47 Score=427.99 Aligned_cols=470 Identities=18% Similarity=0.145 Sum_probs=323.5
Q ss_pred cccEEeCCC---------CCcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCC
Q 006657 64 WAGVVCNDS---------TGRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNF 128 (636)
Q Consensus 64 w~gv~C~~~---------~~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l 128 (636)
+..|.|... ...++.|+|+++.+.+..+ ..++.+++++|.+.+..|.++.++++|++|++++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 345778532 2368889999888876543 3567888888888888888888899999999999988
Q ss_pred CCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC
Q 006657 129 ENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD 208 (636)
Q Consensus 129 ~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~ 208 (636)
++. .|..++.+++|++|++++|.+++..|..++++++|++|++++|.+...+.+. +.++++|++|++++|.
T Consensus 94 ~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 94 IFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--------GFPTEKLKVLDFQNNA 164 (606)
T ss_dssp SEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--------TCCCTTCCEEECCSSC
T ss_pred ccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc--------ccCCcccCEEEcccCc
Confidence 865 6778888899999999999888766777888889999999988887654442 4457888888888888
Q ss_pred CCCCCChhhhhCCCCCCC--EEEeecCCCCCCCCCccccCC---------------------------------------
Q 006657 209 LSTASDWFLVTNMLPSLQ--VLKLSACSLHNSLPELPIANF--------------------------------------- 247 (636)
Q Consensus 209 l~~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p~~~~~~l--------------------------------------- 247 (636)
+++.+ +..+..+++|+ +|++++|.+++..| ..+...
T Consensus 165 l~~~~--~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 165 IHYLS--KEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp CCEEC--HHHHHTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred ccccC--hhhhhhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 77653 22456677777 77777777765444 222110
Q ss_pred ------------CCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccch
Q 006657 248 ------------SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT 315 (636)
Q Consensus 248 ------------~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 315 (636)
.+|+.|++++|.++ .+++..|..+++|++|++++|+++ .+|..+.++++|++|++++|++++..|.
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh
Confidence 15677777778776 455467888888888888888887 6777788888888888888888877777
Q ss_pred hhhCCCCCCEEEccCcccccccCc-------cceEEEccCCCCcccc--chHHHHhhhcCceEecCCCcCcccCccccCC
Q 006657 316 WLHKFTRLEYLSLRENRLQGMISS-------VLVVFDIGENGFSGNI--PAWIGEKLLRNLILRLRSNKFDGQIPAELCR 386 (636)
Q Consensus 316 ~l~~l~~L~~L~L~~n~l~~~~p~-------~L~~L~l~~n~l~g~i--p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 386 (636)
.+..+++|++|++++|.+.+.+|. .|+.|++++|.+.+.. |..+.. +++|++|++++|.+.+..|..+..
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN-LSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT-CTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc-CCCCCEEECCCCcCCcCCHHHhcC
Confidence 788888888888888877765543 6778888888877554 445543 778888888888887777777778
Q ss_pred CCCCCEEEccCccCccccchh-hhhhhhhccccCCCc-----cccccccceeeceEEE---Eeec---cccccccccccc
Q 006657 387 LTSLHILDLSHNNFSGTLPRC-INNLTAMMNQENSME-----TDKEYDTFTIELSILV---VMKG---RELAYNTMLKLV 454 (636)
Q Consensus 387 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~L 454 (636)
+++|++|++++|++++..|.. +.++++|+.++.... .+...........+.. .+.+ ........+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 888888888888877665543 666666666543211 1111111000000000 0111 111234456667
Q ss_pred cEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 455 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
++|++++|++++..|..++++++|++|+|++|++++..|..+..+++| +|++++|++++..|..+..+++|+++++++|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 777777777776666666777777777777777776666667777777 7777777777666666666667777777777
Q ss_pred cCcccCCCCCccCCc
Q 006657 535 NLTGKIPLGTQLQGF 549 (636)
Q Consensus 535 ~l~g~ip~~~~~~~~ 549 (636)
++.|.++..+...|+
T Consensus 558 ~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 558 PLDCTCSNIYFLEWY 572 (606)
T ss_dssp CEECSGGGHHHHHHH
T ss_pred CccccCCcHHHHHHH
Confidence 777666654443333
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-46 Score=418.20 Aligned_cols=472 Identities=18% Similarity=0.144 Sum_probs=370.4
Q ss_pred EEEcCCCCCC---CCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccC
Q 006657 78 ELRLGNPFLH---DDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT 154 (636)
Q Consensus 78 ~L~L~~~~l~---~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~ 154 (636)
.++.++..+. ...|..++.+++++|.+.+..|.++.++++|++|+|++|.+++. .|..|+++++|++|++++|+++
T Consensus 16 ~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCS
T ss_pred eEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCccc
Confidence 4666665443 44557789999999999998899999999999999999999875 7889999999999999999999
Q ss_pred CCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCC
Q 006657 155 GMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234 (636)
Q Consensus 155 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 234 (636)
+..|..++++++|++|++++|.+...+.. .+.++++|++|++++|.+++.+. + .+..+++|++|++++|.
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~--------~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFI--------PLHNQKTLESLYLGSNHISSIKL-P-KGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGS--------CCTTCTTCCEEECCSSCCCCCCC-C-TTCCCTTCCEEECCSSC
T ss_pred ccChhhhcccccccEeeccccCcccCCcc--------hhccCCcccEEECCCCcccccCc-c-cccCCcccCEEEcccCc
Confidence 88999999999999999999998775322 27899999999999999998621 1 34459999999999999
Q ss_pred CCCCCCCccccCCCCCc--EEEcccCCCCCCCChhhhcCC----------------------------------------
Q 006657 235 LHNSLPELPIANFSSLY--TLDLSYNEFDNTLVPSWLFGL---------------------------------------- 272 (636)
Q Consensus 235 l~~~~p~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~l~~l---------------------------------------- 272 (636)
+++..| ..++.+++|+ .|++++|.+++..+ ..+...
T Consensus 165 l~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 165 IHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp CCEECH-HHHHTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred ccccCh-hhhhhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 986555 6788999999 89999999985433 443221
Q ss_pred -----------CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc--
Q 006657 273 -----------SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS-- 339 (636)
Q Consensus 273 -----------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-- 339 (636)
.+|++|++++|.+++..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|++++..|.
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence 16888999999999888888999999999999999998 7888899999999999999999987653
Q ss_pred ----cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccC--ccccCCCCCCCEEEccCccCccccchhhhhhhh
Q 006657 340 ----VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQI--PAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 340 ----~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
.|+.|++++|.+.+.+|......+++|++|++++|.+++.. |..+..+++|++|++++|++++..|..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 79999999999999888764445999999999999999766 778999999999999999999998999999998
Q ss_pred hccccCCCc-----cccc-cccceeeceEE---EEeeccccccccccccccEEECcCCccCcc---CCcccccccCCCeE
Q 006657 414 MMNQENSME-----TDKE-YDTFTIELSIL---VVMKGRELAYNTMLKLVRCMDLSGNNLSGD---IPEEMTNLLALQSL 481 (636)
Q Consensus 414 L~~~~~~~~-----~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~---~p~~~~~l~~L~~L 481 (636)
|+.++.... .+.. .........+. ..+.+..+...+.+++|++|++++|++++. .+..+..+++|++|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 887764221 1111 11111111111 122333445556677888888888888762 23567788888888
Q ss_pred eCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCCCCC
Q 006657 482 NLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGNNLC 560 (636)
Q Consensus 482 ~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lc 560 (636)
++++|++++..|..|+.+++|++|++++|++++..|..+..++.| +|++++|++++..|.. ..+..+.... +.
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~-----l~ 555 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN-----LR 555 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE-----CT
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe-----CC
Confidence 888888887778888888888888888888888888888888888 8888888888655542 1222333333 34
Q ss_pred CCCCCCCCC
Q 006657 561 GAPLPKNCT 569 (636)
Q Consensus 561 ~~~~~~~c~ 569 (636)
++|+.+.|.
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 455555564
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-47 Score=438.28 Aligned_cols=481 Identities=20% Similarity=0.175 Sum_probs=302.0
Q ss_pred cccccEEeCCCCCcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeec-CccccCCCCCCEEeCCCCCCCCCCCc
Q 006657 62 CTWAGVVCNDSTGRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKI-NPSLLDLKHLVYLDLSNNNFENNQIP 134 (636)
Q Consensus 62 c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i-~~~l~~l~~L~~L~Ls~n~l~~~~ip 134 (636)
|.|..|.+ ...+++.|+|+++.+.+..+ ..++.+++++|...+.+ |.++.++++|++|+|++|.+++. .|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p 90 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HP 90 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CH
Confidence 45666666 34679999999998876543 45788889999888888 66789999999999999999865 68
Q ss_pred hhhcCCCCCCEEEccCCccCCCCCcc--CcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCC
Q 006657 135 VFLGFMGSLRHIDLSRAELTGMIPHQ--LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA 212 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~ 212 (636)
..|+++++|++|++++|.+++.+|.. ++++++|++|++++|.+.....+ ..+.++++|++|++++|.+++.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-------~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-------PSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC-------GGGGTCSSCCEEEEESSCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc-------hhHhhCCCCCEEECCCCcCCee
Confidence 89999999999999999999877765 88999999999999988765332 2378899999999999988776
Q ss_pred CChhhhhCCC--CCCCEEEeecCCCCCCCCCccccCCCC------CcEEEcccCCCCCCCChhhhc--------------
Q 006657 213 SDWFLVTNML--PSLQVLKLSACSLHNSLPELPIANFSS------LYTLDLSYNEFDNTLVPSWLF-------------- 270 (636)
Q Consensus 213 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~~l~~------L~~L~Ls~n~l~~~~~~~~l~-------------- 270 (636)
... .+..+ ++|+.|++++|.+.+..| ..+..+++ |+.|++++|.+++.++ ..+.
T Consensus 164 ~~~--~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 164 CEH--ELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDIT-GNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CSG--GGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTT-SGGGGTSCSCCBSEEECC
T ss_pred CHH--HcccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHH-HHHHhhcCcccccceecc
Confidence 211 22222 566666666666666555 33444333 6666666665554333 1111
Q ss_pred ----------------------C--CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 271 ----------------------G--LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 271 ----------------------~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+ .++|++|++++|.+.+..|..+..+++|++|++++|++++..|..|..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 1 1456666666666665555666666666666666666665556666666666666
Q ss_pred EccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc------------------Ccc
Q 006657 327 SLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ------------------IPA 382 (636)
Q Consensus 327 ~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~------------------~p~ 382 (636)
++++|++++..|. .|+.|++++|.+.+..+..+. .+++|+.|++++|.+++. +|.
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK-FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC-SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc-CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence 6666666554432 456666666666533333333 255666666666655531 111
Q ss_pred ccCCCCCCCEEEccCccCcccc-chhhhhhhhhccccCCCc----cccc-----cccceeeceEEEEe-----ecccccc
Q 006657 383 ELCRLTSLHILDLSHNNFSGTL-PRCINNLTAMMNQENSME----TDKE-----YDTFTIELSILVVM-----KGRELAY 447 (636)
Q Consensus 383 ~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~~~~~~~----~~~~-----~~~~~~~~~~~~~~-----~~~~~~~ 447 (636)
. ..+++.|++++|++++.- +..+.++++|+.++.... .+.. ...+....-....+ .+..+..
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 1 122333333344333211 112233444443321100 0000 00000000000000 1122233
Q ss_pred ccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCC
Q 006657 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527 (636)
Q Consensus 448 ~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 527 (636)
...+++|+.|+|++|++++..|..+.++++|++|+|++|++++..|..+. ++|+.|||++|++++.+|..+ .+|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcC
Confidence 45667788888888888887788888888888888888888876666555 788888888888888877665 4678
Q ss_pred eeeccCCcCcccCCCCCccCCccccccCCC-CCCCCCCCCCCC
Q 006657 528 HLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCT 569 (636)
Q Consensus 528 ~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c~ 569 (636)
++++++|++.|.|+..+...++. ..+ .+||.+....|.
T Consensus 551 ~l~l~~Np~~C~c~~~~f~~~~~----~~~~~~~~~~~~~~C~ 589 (844)
T 3j0a_A 551 VLDITHNKFICECELSTFINWLN----HTNVTIAGPPADIYCV 589 (844)
T ss_dssp EEEEEEECCCCSSSCCSHHHHHH----HTTTTTCCCGGGCCCS
T ss_pred EEEecCCCcccccccHHHHHHHH----hcCcccccccccCccC
Confidence 88888888888887655444332 233 556666555665
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-45 Score=413.69 Aligned_cols=453 Identities=20% Similarity=0.156 Sum_probs=243.8
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCch-hhcCCCCCCEE
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPV-FLGFMGSLRHI 146 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~-~l~~l~~L~~L 146 (636)
.+++.|+|+++.+.+..+ ..++.+++++|.+.+..|.++.++++|++|++++|.++. +|. .|+++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence 468899999988877654 346778888888888888888888888888888888884 454 68888888888
Q ss_pred EccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC-
Q 006657 147 DLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL- 225 (636)
Q Consensus 147 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L- 225 (636)
++++|++++..|..|+++++|++|++++|.+...+... +.++++|++|++++|.+++.+........+++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT--------QVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS--------SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchh--------hcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 88888888777778888888888888888776543221 344555555555555544442211111122334
Q ss_pred --------------------------------------------------CEEEeecCCCCCCCCCccccCCCC--CcEE
Q 006657 226 --------------------------------------------------QVLKLSACSLHNSLPELPIANFSS--LYTL 253 (636)
Q Consensus 226 --------------------------------------------------~~L~L~~n~l~~~~p~~~~~~l~~--L~~L 253 (636)
+.|++++|.+++..| ..+.+++. |++|
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-TTTGGGGGSCCCEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-hHhhccCcCCCCEE
Confidence 444444444433333 23444433 6666
Q ss_pred EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC---------------------------------CC
Q 006657 254 DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS---------------------------------LE 300 (636)
Q Consensus 254 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---------------------------------L~ 300 (636)
++++|.+++.. +.++..+++|++|++++|.+++..|..+.++++ |+
T Consensus 254 ~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 254 DLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp ECTTSCCCEEC-TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred ECCCCCcCccC-cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 66666666333 356666667777777776666555544444444 44
Q ss_pred EEEccCCcCCcccchhhhCCCCCCEEEccCccccccc-C---------ccceEEEccCCCCccccchHHHHhhhcCceEe
Q 006657 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI-S---------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILR 370 (636)
Q Consensus 301 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p---------~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~ 370 (636)
+|++++|.+++..|..|.++++|++|++++|.+.+.. + ..++.+++++|.+++..|..+.. +++|+.|+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 411 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-LGHLEVLD 411 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-CTTCCEEE
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-CCCCCEEe
Confidence 4444444444444444444555555555544432110 0 14555555555555444444432 55555666
Q ss_pred cCCCcCcccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCC-------ccccccccceeeceEE---EE
Q 006657 371 LRSNKFDGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM-------ETDKEYDTFTIELSIL---VV 439 (636)
Q Consensus 371 L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~-------~~~~~~~~~~~~~~~~---~~ 439 (636)
+++|.+++.+| ..+..+++|++|++++|++++..+..+..++.|+.+.... ..+...........+. ..
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 66665555444 3455555555555555555554455555444444433211 1111111100000000 01
Q ss_pred eeccccccccccccccEEECcCCccCccCC--------cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 440 MKGRELAYNTMLKLVRCMDLSGNNLSGDIP--------EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 440 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p--------~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
+.+..+.....+++|++|++++|++++..+ ..+.++++|++|+|++|+++...+..|..+++|+.|++++|+
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 111122223344445555555555543211 124445555555555555552222335555555555555555
Q ss_pred CCccCchhccCCCCCCeeeccCCcCccc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+++..+..|..+++|++|++++|++++.
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 5544444445555555555555555543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-44 Score=405.78 Aligned_cols=440 Identities=20% Similarity=0.123 Sum_probs=348.3
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEE
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHID 147 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~ 147 (636)
.+++.|+|+++.+.+..+ ..++.+++++|.+.+..|.++.++++|++|+|++|.+++. .|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEE
Confidence 468999999998876544 3578889999999988888999999999999999999865 688899999999999
Q ss_pred ccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCC-hhhhh-------
Q 006657 148 LSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD-WFLVT------- 219 (636)
Q Consensus 148 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~------- 219 (636)
+++|.+++..|..++++++|++|++++|.+....+| ..+.++++|++|++++|.+++.+. ....+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-------AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-------GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceech-------HhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 999999977778899999999999999988764433 237788888888888888776521 11111
Q ss_pred -----------------CCCCCCCEEEeecCCCC----------------------------------------------
Q 006657 220 -----------------NMLPSLQVLKLSACSLH---------------------------------------------- 236 (636)
Q Consensus 220 -----------------~~l~~L~~L~L~~n~l~---------------------------------------------- 236 (636)
....+|++|++++|.+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 11225667777666543
Q ss_pred ------------CCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEc
Q 006657 237 ------------NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304 (636)
Q Consensus 237 ------------~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 304 (636)
+.+| .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|++|++
T Consensus 264 ~~l~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIV--KFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp EEEEECCCTTCCGGGG--SCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred hheecccccccccccc--ccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence 1122 1455678888888888885 454 678889999999999999 5778 45 8899999999
Q ss_pred cCCcCCcccchhhhCCCCCCEEEccCccccccc--C------ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI--S------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 305 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p------~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
++|+..+.. .+..+++|++|++++|++++.. | ..|+.|++++|.+.+ +|..+.. +++|+.|++++|++
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~-l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG-LEELQHLDFQHSTL 411 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTT-CTTCCEEECTTSEE
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccC-CCCCCeeECCCCcc
Confidence 999665544 5678899999999999888662 2 378899999998874 6655554 88999999999999
Q ss_pred cccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec-cccccccccccc
Q 006657 377 DGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG-RELAYNTMLKLV 454 (636)
Q Consensus 377 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L 454 (636)
.+..| ..+..+++|++|++++|++++..|..+.++++|+.++.... .+.+ ..+...+.+++|
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------------~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN----------------SFKDNTLSNVFANTTNL 475 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------------EEGGGEECSCCTTCTTC
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC----------------cCCCcchHHhhccCCCC
Confidence 88777 67888999999999999999888888888888766543111 1122 134445667889
Q ss_pred cEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCC-CCCeeeccC
Q 006657 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT-FLSHLNLSD 533 (636)
Q Consensus 455 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~ 533 (636)
++|++++|++++..|..++++++|++|++++|++++.+|..+..+++|++|++++|+++ .+|..+..++ +|++|++++
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCS
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccC
Confidence 99999999999888999999999999999999999888999999999999999999998 6777788886 599999999
Q ss_pred CcCcccCCCCCccCCcc
Q 006657 534 NNLTGKIPLGTQLQGFN 550 (636)
Q Consensus 534 N~l~g~ip~~~~~~~~~ 550 (636)
|++.|.++..+..+++.
T Consensus 555 N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 555 NSVACICEHQKFLQWVK 571 (606)
T ss_dssp CCCCCSSTTHHHHTTTT
T ss_pred CCcccCCccHHHHHHHH
Confidence 99999998766666654
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-43 Score=399.49 Aligned_cols=465 Identities=20% Similarity=0.173 Sum_probs=292.5
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEE
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHID 147 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~ 147 (636)
.+++.|+|+++.+.+..+ ..++.+++++|.+.+..+.+++++++|++|++++|.+++. .|..++++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc-ChhHccccCCCCEEE
Confidence 468888998888877655 3577888888888765555788899999999999988754 557788889999999
Q ss_pred ccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccc---cc------------------c----------------
Q 006657 148 LSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYL---EN------------------F---------------- 190 (636)
Q Consensus 148 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~---~~------------------l---------------- 190 (636)
+++|.+++..|..++++++|++|++++|.+...+...+.. .. +
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 9999888888888888888888888888776543211000 00 0
Q ss_pred --------------------------------ccccCC--CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC
Q 006657 191 --------------------------------SWLSGL--SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236 (636)
Q Consensus 191 --------------------------------~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 236 (636)
.++.++ ++|++|++++|.+++.+. ..+..+++|++|++++|.+.
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSCCBS
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc--ccccCcccccEeeCCCCccC
Confidence 001111 124444444444443321 13445555666666655555
Q ss_pred CCCCCccccCCCCCcEEEcccCCCCCC-----CC---hhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCc
Q 006657 237 NSLPELPIANFSSLYTLDLSYNEFDNT-----LV---PSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN 308 (636)
Q Consensus 237 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 308 (636)
+..| ..+.++++|+.|++++|...+. +| ...+..+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 286 ~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 286 HLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp EECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 4444 3455555555555554433221 11 1256667788888888888887777778888877777777765
Q ss_pred CCccc--chhhhC--CCCCCEEEccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc
Q 006657 309 FISSI--PTWLHK--FTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 309 l~~~~--p~~l~~--l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~ 378 (636)
+.... +..+.. .++|++|++++|++++..|. .|+.|++++|.+.+.+|...+..+++|++|++++|++++
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 43211 111211 13455555555555544332 445555555555544443222234555555555555444
Q ss_pred c--------------------------CccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccccee
Q 006657 379 Q--------------------------IPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432 (636)
Q Consensus 379 ~--------------------------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 432 (636)
. +|..+..+++|++|++++|++++..|..+.++++|+.++.+...-.....
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 521 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK--- 521 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS---
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch---
Confidence 4 44455555555555555555554444445555544443321100000000
Q ss_pred eceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCC
Q 006657 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512 (636)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 512 (636)
....+........++.|++|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus 522 -----~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 522 -----HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp -----TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred -----hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 000011122356788999999999999954445799999999999999999977777789999999999999999
Q ss_pred CccCchhcc-CCCCCCeeeccCCcCcccCCC-CCccCCcc
Q 006657 513 SGRIPQSIS-SLTFLSHLNLSDNNLTGKIPL-GTQLQGFN 550 (636)
Q Consensus 513 ~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~-~~~~~~~~ 550 (636)
++..|..+. .+++|+++++++|++.|.|+. .+...|++
T Consensus 597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp CBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 998888887 789999999999999999986 55555554
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-43 Score=397.00 Aligned_cols=419 Identities=18% Similarity=0.102 Sum_probs=324.6
Q ss_pred CCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCC
Q 006657 89 DEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168 (636)
Q Consensus 89 ~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 168 (636)
..+..++.+++++|.+.+..+.++.++++|++|++++|.+++. .|..|+++++|++|++++|.+++..|..|+++++|+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 3446788999999999998888999999999999999999965 678899999999999999999988899999999999
Q ss_pred eEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCC
Q 006657 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS 248 (636)
Q Consensus 169 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 248 (636)
+|++++|.+...+... +.++++|++|++++|.+++.. ++..++++++|++|++++|++++..+ ..++.++
T Consensus 108 ~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 177 (606)
T 3vq2_A 108 NLVAVETKLASLESFP--------IGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLR 177 (606)
T ss_dssp EEECTTSCCCCSSSSC--------CTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHH
T ss_pred EEEccCCccccccccc--------cCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecCh-hhhhhhh
Confidence 9999999987754322 789999999999999998632 12368899999999999999986555 4455444
Q ss_pred CCc----EEEcccCCCCCCCChhhh-------------------------------------------------------
Q 006657 249 SLY----TLDLSYNEFDNTLVPSWL------------------------------------------------------- 269 (636)
Q Consensus 249 ~L~----~L~Ls~n~l~~~~~~~~l------------------------------------------------------- 269 (636)
+|+ +|++++|.++ .+++..+
T Consensus 178 ~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp HCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred ccccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 433 5666655554 2332222
Q ss_pred -------------------------cCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCC
Q 006657 270 -------------------------FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLE 324 (636)
Q Consensus 270 -------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 324 (636)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|+
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~ 331 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLK 331 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCC
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccc
Confidence 22344444444444443 233 556666777777777776 4566 34 667777
Q ss_pred EEEccCcccccccC----ccceEEEccCCCCccc--cchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCc
Q 006657 325 YLSLRENRLQGMIS----SVLVVFDIGENGFSGN--IPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHN 398 (636)
Q Consensus 325 ~L~L~~n~l~~~~p----~~L~~L~l~~n~l~g~--ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 398 (636)
+|++++|+..+.++ ..|+.|++++|.+++. +|..+.. +++|++|++++|.+++ +|..+..+++|+.|++++|
T Consensus 332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTS
T ss_pred eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCC
Confidence 77777775444332 3688888888888765 3666654 7888888888888875 5677888888888888888
Q ss_pred cCccccc-hhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCcc-CCccccccc
Q 006657 399 NFSGTLP-RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD-IPEEMTNLL 476 (636)
Q Consensus 399 ~l~~~~p-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~-~p~~~~~l~ 476 (636)
++++..| ..+.++++|+.++.... .+.+..+.....+++|++|++++|.+++. +|..++.++
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n----------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYT----------------NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTS----------------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCccChhhhhccccCCEEECcCC----------------CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 8887777 56777777765543111 12233445566788899999999999984 789999999
Q ss_pred CCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 477 ALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 477 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
+|++|++++|++++..|..++.+++|++|++++|++++.+|..+..+++|++|++++|+++ .+|..
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 56654
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.7e-44 Score=393.60 Aligned_cols=454 Identities=20% Similarity=0.196 Sum_probs=332.9
Q ss_pred CcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCC
Q 006657 61 CCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFM 140 (636)
Q Consensus 61 ~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l 140 (636)
.|.|.|+ |+....++++ ++...+..++.+++++|.+.+..|.++.++++|++|++++|.+++. .|..++.+
T Consensus 3 ~C~~~~~-c~~~~~~l~~-------ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l 73 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTS-------IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSL 73 (549)
T ss_dssp EECTTSE-EECTTSCCSS-------CCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTC
T ss_pred cCCCCce-EECCCCcccc-------ccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-Chhhcccc
Confidence 4999998 8753322321 1222234567777777898888888999999999999999999865 66789999
Q ss_pred CCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCCCCChhhhh
Q 006657 141 GSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LSTASDWFLVT 219 (636)
Q Consensus 141 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 219 (636)
++|++|++++|++++..|..++++++|++|++++|.+...+.+ ..+.++++|++|++++|. +...+. ..+
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~~l~~L~~L~L~~n~~~~~~~~--~~~ 144 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-------SLFPNLTNLQTLRIGNVETFSEIRR--IDF 144 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-------CSCTTCTTCCEEEEEESSSCCEECT--TTT
T ss_pred ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh-------hhhhccCCccEEECCCCccccccCH--hhh
Confidence 9999999999999987777799999999999999988764332 237889999999999998 444331 257
Q ss_pred CCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccC--Cc-cccCC
Q 006657 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPI--PD-GLQNL 296 (636)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~-~l~~l 296 (636)
..+++|++|++++|.+++..| ..+.++++|++|++++|.+. .++...+..+++|++|++++|++++.. |. ....+
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCC
T ss_pred hcccccCeeeccCCcccccCh-hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhh
Confidence 789999999999999998888 68899999999999999885 556455577899999999999998642 21 23456
Q ss_pred CCCCEEEccCCcCCcccchhh----hCCCCCCEEEccCcccccc------------------------------------
Q 006657 297 TSLEHLDLRSNNFISSIPTWL----HKFTRLEYLSLRENRLQGM------------------------------------ 336 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~------------------------------------ 336 (636)
++|+.|++++|.+++..+..+ ..+++|+.+++++|.+.+.
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred hcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence 788888888887776544333 4456666666666665442
Q ss_pred -----cCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcc---ccCCCCCCCEEEccCccCccccc--h
Q 006657 337 -----ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPA---ELCRLTSLHILDLSHNNFSGTLP--R 406 (636)
Q Consensus 337 -----~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~ 406 (636)
....++.+++++|.+. .+|..++..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ .
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence 1136888888888886 78888866689999999999999887653 36788999999999999986533 4
Q ss_pred hhhhhhhhccccCCC----ccccccccceeeceEEEEeeccccccc--cccccccEEECcCCccCccCCcccccccCCCe
Q 006657 407 CINNLTAMMNQENSM----ETDKEYDTFTIELSILVVMKGRELAYN--TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQS 480 (636)
Q Consensus 407 ~l~~l~~L~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~ 480 (636)
.+..+++|+.++.+. .+|........ -....+.+...... ...+.|++|++++|++++.+ ..+++|++
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~--L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~ 455 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEK--MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQE 455 (549)
T ss_dssp HGGGCTTCCEEECTTCCCCCCCSCCCCCTT--CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred hhhcCCCCCEEECCCCCCccCChhhccccc--ccEEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcE
Confidence 577777777665321 12221111000 00111222111111 11246888888888887643 46788888
Q ss_pred EeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 481 LNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 481 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|++|++++|+++|.||..
T Consensus 456 L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 456 LYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp EECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred EECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 999999888 6776 467888899999999988888888888888999999999988888853
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=394.23 Aligned_cols=440 Identities=20% Similarity=0.197 Sum_probs=290.6
Q ss_pred cEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEc
Q 006657 75 RVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL 148 (636)
Q Consensus 75 ~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L 148 (636)
+++.|+++++.+.+..+ ..++.+++++|.+.+..|..+.++++|++|++++|.+++. .|..|+.+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccc
Confidence 56677777765543322 2345555666655555555556666666666666665543 3455556666666666
Q ss_pred cCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC---
Q 006657 149 SRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL--- 225 (636)
Q Consensus 149 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L--- 225 (636)
++|++++..+..++++++|++|++++|.+....+| ..+.++++|++|++++|.+++.+. ..+..+++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-------~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~~ 178 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-------EYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLL 178 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-------GGGGGCTTCCEEECTTSCCCEECG--GGGHHHHTCTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecCh-------hhhcccCCCCEEeCcCCccceecH--HHccchhccchh
Confidence 66665544443455666666666666655443222 125555666666666665554421 122333334
Q ss_pred -CEEEeecCCCCCCCCCccccCCCCCcEEEcccCC---------------------------------------------
Q 006657 226 -QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE--------------------------------------------- 259 (636)
Q Consensus 226 -~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~--------------------------------------------- 259 (636)
+.|++++|.+.+..| ..+... +|+.|++++|.
T Consensus 179 ~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp CCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 556666666654333 333333 56666655542
Q ss_pred -------------CCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 260 -------------FDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 260 -------------l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+.+.++ ..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|
T Consensus 257 l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L 330 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRL 330 (570)
T ss_dssp SEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEE
T ss_pred cchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEE
Confidence 111122 44555677777777777776 466666666 7777777777776 4443 466777778
Q ss_pred EccCcccccccC----ccceEEEccCCCCcccc--chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccC
Q 006657 327 SLRENRLQGMIS----SVLVVFDIGENGFSGNI--PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNF 400 (636)
Q Consensus 327 ~L~~n~l~~~~p----~~L~~L~l~~n~l~g~i--p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 400 (636)
++++|.+.+..+ ..|+.|++++|.+++.. |..+.. +++|++|++++|.+++..+ .+..+++|++|++++|++
T Consensus 331 ~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEE
T ss_pred eCcCCccccccccccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCccccccc-cccccCCCCEEEccCCcc
Confidence 887777766554 36888888888887543 566654 7888888888888875443 478888888888888888
Q ss_pred ccccc-hhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccC-ccCCcccccccCC
Q 006657 401 SGTLP-RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS-GDIPEEMTNLLAL 478 (636)
Q Consensus 401 ~~~~p-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-g~~p~~~~~l~~L 478 (636)
++..| ..+.++++|+.++.... .+.+..+.....+++|++|++++|.++ +.+|..+..+++|
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n----------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHT----------------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTS----------------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccccchhhhhcCCCCCEEeCcCC----------------cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 76655 45666766665542111 112223445566788999999999998 6789999999999
Q ss_pred CeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCcc-CCcc
Q 006657 479 QSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQL-QGFN 550 (636)
Q Consensus 479 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~-~~~~ 550 (636)
++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++|.+|..+.+ .|+.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~ 545 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence 99999999999888999999999999999999999888888999999999999999999999987655 4544
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-43 Score=408.74 Aligned_cols=458 Identities=18% Similarity=0.164 Sum_probs=339.3
Q ss_pred CCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCC-chhhcCCCCCCEEEccCCccCCCCCccCcCCCCCC
Q 006657 90 EPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQI-PVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168 (636)
Q Consensus 90 ~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~i-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 168 (636)
.+..++.+++++|.+.+..|.++.++++|++|+|++|...+. + |..|+++++|++|+|++|.+.+..|..|+++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 456788999999999999999999999999999999976554 5 78899999999999999999999999999999999
Q ss_pred eEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCC-
Q 006657 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF- 247 (636)
Q Consensus 169 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l- 247 (636)
+|++++|.+.+..... ..+.++++|++|++++|.+++.+. ...++++++|++|++++|.+++..+ ..+..+
T Consensus 101 ~L~Ls~n~l~~~~~~~------~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~ 172 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKD------GYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQ 172 (844)
T ss_dssp CEECTTCCCSSCCSTT------CCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCCS-GGGHHHH
T ss_pred EeeCcCCCCCcccccC------ccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeCH-HHccccc
Confidence 9999999886522111 227889999999999999988732 2357899999999999999997777 677777
Q ss_pred -CCCcEEEcccCCCCCCCChhhhcCCCC------CcEEEccCCcCcccCCccccC-------------------------
Q 006657 248 -SSLYTLDLSYNEFDNTLVPSWLFGLSH------LVFLDLGFNSFGGPIPDGLQN------------------------- 295 (636)
Q Consensus 248 -~~L~~L~Ls~n~l~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~------------------------- 295 (636)
++|+.|+++.|.+.+..+ ..+..+.+ |++|++++|.+++..|..+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 899999999999998776 55555544 999999999887766654432
Q ss_pred -------------CCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc------cceEEEccCCCCccccc
Q 006657 296 -------------LTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIP 356 (636)
Q Consensus 296 -------------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip 356 (636)
.++|++|++++|.+.+..|..+..+++|++|++++|++++..|. .|+.|++++|.+.+..|
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 26799999999999888888888999999999999998877654 78899999999987667
Q ss_pred hHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC-Cccccccccc-----
Q 006657 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS-METDKEYDTF----- 430 (636)
Q Consensus 357 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~-~~~~~~~~~~----- 430 (636)
..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++. +.+++.+....+. ..++......
T Consensus 332 ~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 332 SNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF-IPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CSCSS-CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS-CCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred HHhcC-CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC-CCCcchhccCCCCcccccccccccceeec
Confidence 76664 8899999999999987777788889999999999998874 222 2222222111110 0111110000
Q ss_pred ---------------eeeceEEEEeeccccc------cccccccccEEECcCCccC-----ccCCcccccccCCCeEeCC
Q 006657 431 ---------------TIELSILVVMKGRELA------YNTMLKLVRCMDLSGNNLS-----GDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 431 ---------------~~~~~~~~~~~~~~~~------~~~~~~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~L~Ls 484 (636)
.........+.+.... ....+++|+.|++++|.++ +..|..+.++++|++|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 0000000111111111 1223455666666666665 3334567778888888888
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCCCCCCCCC
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPL 564 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~~~~ 564 (636)
+|++++..|..|..+++|+.|+|++|++++..|..+. ++|++|++++|++++.+|.. +..+....+.+| |+
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N-----p~ 559 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN-----KF 559 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE-----CC
T ss_pred CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC-----Cc
Confidence 8888888888888888888888888888876666555 78888888888888877753 444444445544 44
Q ss_pred CCCCC
Q 006657 565 PKNCT 569 (636)
Q Consensus 565 ~~~c~ 569 (636)
.|.|.
T Consensus 560 ~C~c~ 564 (844)
T 3j0a_A 560 ICECE 564 (844)
T ss_dssp CCSSS
T ss_pred ccccc
Confidence 55554
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-43 Score=398.53 Aligned_cols=409 Identities=16% Similarity=0.219 Sum_probs=267.2
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc------CC------CC---------------------CccCc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL------TG------MI---------------------PHQLG 162 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l------~~------~~---------------------p~~l~ 162 (636)
.+++.|+|+++.+.|. +|..++++++|++|++++|.+ .+ .+ |..+.
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 4788999999999986 999999999999999999965 11 11 11111
Q ss_pred -------------------CCCCCCeEecc--CCCCCCcccccccccccccccCCCCCcEEEccCCCCCC----------
Q 006657 163 -------------------NLFNLQYLDLS--IDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST---------- 211 (636)
Q Consensus 163 -------------------~l~~L~~L~Ls--~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~---------- 211 (636)
....++.+.+. .|+++++ ...++++++|++|+|++|.+++
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i---------p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV---------SKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE---------CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccC---------CHHHhcccCCCEEECcCCcccccccccccccc
Confidence 00011111111 1112111 1235666667777777666666
Q ss_pred --------CCChhhhhC--CCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCC-CCC-CCChhhhcCC------C
Q 006657 212 --------ASDWFLVTN--MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE-FDN-TLVPSWLFGL------S 273 (636)
Q Consensus 212 --------~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~l~~l------~ 273 (636)
.|. .++ ++++|++|++++|.+.+.+| ..++++++|++|++++|+ ++| .+| ..++.+ +
T Consensus 231 ~~~~~~~~ip~---~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~ 305 (636)
T 4eco_A 231 NSEYAQQYKTE---DLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLK-DDWQALADAPVGE 305 (636)
T ss_dssp TSHHHHHHTTS---CCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHHHSGGGG
T ss_pred ccchhcccCch---hhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccch-HHHHhhhccccCC
Confidence 332 455 66677777777776666666 566666777777777776 665 455 445444 6
Q ss_pred CCcEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc------c-ceEE
Q 006657 274 HLVFLDLGFNSFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------V-LVVF 344 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~-L~~L 344 (636)
+|++|++++|+++ .+|. .++++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|. . |+.|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 6777777777666 5666 66666777777777777666666 6666666777777777666 3332 3 6667
Q ss_pred EccCCCCccccchHHHHh-hhcCceEecCCCcCcccCccccC-------CCCCCCEEEccCccCccccchh-hhhhhhhc
Q 006657 345 DIGENGFSGNIPAWIGEK-LLRNLILRLRSNKFDGQIPAELC-------RLTSLHILDLSHNNFSGTLPRC-INNLTAMM 415 (636)
Q Consensus 345 ~l~~n~l~g~ip~~~~~~-~~~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~ 415 (636)
++++|.++ .+|..+... +++|+.|++++|.+++.+|..+. .+++|++|++++|+++ .+|.. +..++.|+
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS 460 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC
Confidence 77777666 566554320 22566777777777766666666 5666777777777766 34433 33455555
Q ss_pred cccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccc--cccCCCeEeCCCccCcCCCC
Q 006657 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT--NLLALQSLNLSHNFLAGKIP 493 (636)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~Ls~N~l~~~ip 493 (636)
.++.....-....... ..+ .......+++|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|
T Consensus 461 ~L~Ls~N~l~~i~~~~--------~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 461 SINLMGNMLTEIPKNS--------LKD-ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp EEECCSSCCSBCCSSS--------SEE-TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred EEECCCCCCCCcCHHH--------hcc-ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence 4432110000000000 000 0001123447999999999999 8898887 99999999999999997 89
Q ss_pred ccccCCCCCCEEeC------CCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC
Q 006657 494 ENVGAMRSLESIDF------SGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 494 ~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 557 (636)
..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|... ...+....+.+|
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N 597 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDN 597 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSC
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCC
Confidence 99999999999999 56889999999999999999999999999 7898753 355555556665
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.8e-42 Score=370.93 Aligned_cols=373 Identities=21% Similarity=0.196 Sum_probs=290.4
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCC-CccCcCCCCCCeEeccCCCCCCccccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMI-PHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 194 (636)
++|++|+|++|.+++. .|..++++++|++|++++|.+.+.+ |..|.++++|++|++++|.+..... ..+.
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET--------GAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT--------TTTT
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh--------hhcc
Confidence 5777888888877754 5677777888888888887776554 4567777888888888777654321 1266
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC--
Q 006657 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL-- 272 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l-- 272 (636)
++++|++|++++|.+++.......+..+++|++|++++|.+++..|...+.++++|++|++++|.+++..+ ..+..+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh-hhhhcccc
Confidence 77778888888877765311111367788888888888888876674347888889999999888875544 666555
Q ss_pred CCCcEEEccCCcCcccCCcc--------ccCCCCCCEEEccCCcCCcccchhhhCC---CCCCEEEccCcccccccCccc
Q 006657 273 SHLVFLDLGFNSFGGPIPDG--------LQNLTSLEHLDLRSNNFISSIPTWLHKF---TRLEYLSLRENRLQGMISSVL 341 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~L 341 (636)
.+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+... ++|+.|++++|...+..
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---- 255 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---- 255 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC----
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc----
Confidence 67888999999888654433 2356889999999999998888777654 78999999988766542
Q ss_pred eEEEccCCCCccccchHHHH-hhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC
Q 006657 342 VVFDIGENGFSGNIPAWIGE-KLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420 (636)
Q Consensus 342 ~~L~l~~n~l~g~ip~~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 420 (636)
+..+.+.+..+..+.. ..++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+.++++
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------- 324 (455)
T 3v47_A 256 ----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH------- 324 (455)
T ss_dssp ----TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-------
T ss_pred ----cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc-------
Confidence 2223333222222211 2468999999999999999999999999999999999999888877776654
Q ss_pred CccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC
Q 006657 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR 500 (636)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 500 (636)
|++|+|++|.+++..|..++++++|++|+|++|++++..|..+..++
T Consensus 325 ---------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 325 ---------------------------------LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp ---------------------------------CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred ---------------------------------CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 88999999999988899999999999999999999998899999999
Q ss_pred CCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCcc
Q 006657 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQL 546 (636)
Q Consensus 501 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 546 (636)
+|++|++++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999999999877778899999999999999999999965433
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.5e-43 Score=383.00 Aligned_cols=424 Identities=17% Similarity=0.149 Sum_probs=299.8
Q ss_pred EEEcCCCCCCCCC---CccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccC
Q 006657 78 ELRLGNPFLHDDE---PFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT 154 (636)
Q Consensus 78 ~L~L~~~~l~~~~---~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~ 154 (636)
.+|++++.+.... +..++.+++++|.+.+..|.++.++++|++|++++|.+++. .|..++++++|++|++++|+++
T Consensus 4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp EEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC
T ss_pred eEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee
Confidence 5788887766322 24677788888888877777888888888888888888864 5778888888888888888888
Q ss_pred CCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC--CEEEeec
Q 006657 155 GMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL--QVLKLSA 232 (636)
Q Consensus 155 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L--~~L~L~~ 232 (636)
.+|.. .+++|++|++++|.+...++| ..++++++|++|++++|.+++. .+..+++| ++|++++
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p-------~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPIC-------KEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVL 147 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCC-------GGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEE
T ss_pred -ecCcc--ccCCccEEeccCCccccccch-------hhhccCCcceEEEecCcccchh-----hccccccceeeEEEeec
Confidence 56665 788888888888887665433 2377888888888888888763 34556666 8888888
Q ss_pred CCC--CCCCCCccccC--------------------------CCCCcEEEcccCC-------CCCCCChhhhcCCCCCcE
Q 006657 233 CSL--HNSLPELPIAN--------------------------FSSLYTLDLSYNE-------FDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 233 n~l--~~~~p~~~~~~--------------------------l~~L~~L~Ls~n~-------l~~~~~~~~l~~l~~L~~ 277 (636)
|.+ .+..| ..+.. +++|+.|++++|. +.+.+ ..+..+++|++
T Consensus 148 n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~l~~L~~ 224 (520)
T 2z7x_B 148 GETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL--AKLQTNPKLSN 224 (520)
T ss_dssp CTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH--HGGGGCTTCCE
T ss_pred cccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch--hhhccccchhh
Confidence 888 55555 33433 4444444444443 22211 13444455555
Q ss_pred EEccCCcCcccCCcccc---CCCCCCEEEccCCcCCcccchhh-----hCCCCCCEEEccCcccccccC----------c
Q 006657 278 LDLGFNSFGGPIPDGLQ---NLTSLEHLDLRSNNFISSIPTWL-----HKFTRLEYLSLRENRLQGMIS----------S 339 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p----------~ 339 (636)
|++++|.+++..+..+. ..++|++|++++|+++|.+|..+ +.+++|+.+++++|.+ .+| .
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence 55555444432211111 13478888888888888888777 7788888888888887 445 3
Q ss_pred cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc--ccchhhhhhhhhccc
Q 006657 340 VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG--TLPRCINNLTAMMNQ 417 (636)
Q Consensus 340 ~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~~ 417 (636)
.++.|++++|.+.+.... ..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+.++++|+.+
T Consensus 303 ~L~~L~l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ceeEEEcCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 588888888887643210 137788888888888888788888888888888888888886 566677777776655
Q ss_pred cCCCccccccccceeeceEEEEeecccc-ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccc
Q 006657 418 ENSMETDKEYDTFTIELSILVVMKGREL-AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV 496 (636)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 496 (636)
+.+... +.+..+ .....++.|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+
T Consensus 380 ~Ls~N~----------------l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~ 440 (520)
T 2z7x_B 380 DISQNS----------------VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV 440 (520)
T ss_dssp ECCSSC----------------CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred ECCCCc----------------CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence 431110 011011 1133456789999999999888877664 78999999999998 788888
Q ss_pred cCCCCCCEEeCCCCCCCccCchh-ccCCCCCCeeeccCCcCcccCCCCCc
Q 006657 497 GAMRSLESIDFSGNLLSGRIPQS-ISSLTFLSHLNLSDNNLTGKIPLGTQ 545 (636)
Q Consensus 497 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~~~ 545 (636)
..+++|++|++++|+++ .+|.. +..+++|++|++++|+++|.|+..+.
T Consensus 441 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 441 VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 89999999999999998 45554 88889999999999999988875444
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.9e-42 Score=391.49 Aligned_cols=394 Identities=19% Similarity=0.221 Sum_probs=235.1
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEc-cCCccCCC--------------------------------------
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL-SRAELTGM-------------------------------------- 156 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L-~~n~l~~~-------------------------------------- 156 (636)
.+++.|+|++|.+.|. +|..++++++|++|+| ++|.++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5799999999999986 9999999999999999 88876655
Q ss_pred --------------------------------------CCccCcCCCCCCeEeccCCCCCCccccc--ccc-------cc
Q 006657 157 --------------------------------------IPHQLGNLFNLQYLDLSIDTHNPISFSF--LYL-------EN 189 (636)
Q Consensus 157 --------------------------------------~p~~l~~l~~L~~L~Ls~n~~~~~~~~~--~~~-------~~ 189 (636)
+|..++++++|++|+|++|.+.+..++. .+. ..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 4444555555555555555544310000 000 00
Q ss_pred ccccc--CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCC-CCC-CCCCccccC-------CCCCcEEEcccC
Q 006657 190 FSWLS--GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS-LHN-SLPELPIAN-------FSSLYTLDLSYN 258 (636)
Q Consensus 190 l~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~~-------l~~L~~L~Ls~n 258 (636)
...++ ++++|++|+|++|.+.+.. +..+.++++|++|++++|+ +++ .+| ..+++ +++|+.|++++|
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCC
Confidence 01133 4555555555555444331 1234445555555555554 444 344 22222 225555555555
Q ss_pred CCCCCCChh--hhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCC-CCEEEccCccccc
Q 006657 259 EFDNTLVPS--WLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTR-LEYLSLRENRLQG 335 (636)
Q Consensus 259 ~l~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~ 335 (636)
.++ .+| . .++++++|++|++++|+++ .+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++
T Consensus 559 ~L~-~ip-~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 559 NLE-EFP-ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CCC-BCC-CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred cCC-ccC-ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 554 444 3 4555555555555555554 444 4555555555555555554 44444555554 555555555554
Q ss_pred ccCc--------cceEEEccCCCCccccchHH---HH-hhhcCceEecCCCcCcccCcccc-CCCCCCCEEEccCccCcc
Q 006657 336 MISS--------VLVVFDIGENGFSGNIPAWI---GE-KLLRNLILRLRSNKFDGQIPAEL-CRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 336 ~~p~--------~L~~L~l~~n~l~g~ip~~~---~~-~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~ 402 (636)
.+|. .|+.|++++|.+.|.+|... .. ..++|+.|++++|.++ .+|..+ ..+++|+.|+|++|+++
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 2222 14555555555554443211 00 0124555555555555 333332 24455555555555554
Q ss_pred ccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccc--cccCCCe
Q 006657 403 TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT--NLLALQS 480 (636)
Q Consensus 403 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~ 480 (636)
.+|..+.... .....++++|+.|+|++|+++ .+|..+. .+++|+.
T Consensus 711 ~ip~~~~~~~--------------------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 711 SIPENSLKPK--------------------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp CCCTTSSSCT--------------------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred ccChHHhccc--------------------------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 3333221100 001123457999999999999 8899887 9999999
Q ss_pred EeCCCccCcCCCCccccCCCCCCEEeCCC------CCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCcccccc
Q 006657 481 LNLSHNFLAGKIPENVGAMRSLESIDFSG------NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCF 554 (636)
Q Consensus 481 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~ 554 (636)
|+|++|++++ +|..++.+++|+.|+|++ |++.+.+|..+..+++|++|++++|++ +.+|.. ....+....+
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdL 834 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDI 834 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEEC
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEEC
Confidence 9999999997 899999999999999977 889999999999999999999999999 889976 2344444445
Q ss_pred CCC
Q 006657 555 AGN 557 (636)
Q Consensus 555 ~~n 557 (636)
.+|
T Consensus 835 s~N 837 (876)
T 4ecn_A 835 ADN 837 (876)
T ss_dssp CSC
T ss_pred CCC
Confidence 554
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-41 Score=379.87 Aligned_cols=433 Identities=20% Similarity=0.169 Sum_probs=285.6
Q ss_pred CCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCC
Q 006657 88 DDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167 (636)
Q Consensus 88 ~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 167 (636)
..+|..++.+++++|.+.+..+.+|.++++|++|||++|.+++. .|..|.++++|++|+|++|++++..+..|.++++|
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 33445566777777777766666788888888888888888743 44567788888888888888876666667888888
Q ss_pred CeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCC
Q 006657 168 QYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 247 (636)
Q Consensus 168 ~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l 247 (636)
++|++++|++...+... ++++++|++|++++|.++..+. +..+..+++|++|++++|++++..+ ..+..+
T Consensus 127 ~~L~Ls~N~l~~l~~~~--------~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L 196 (635)
T 4g8a_A 127 QKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVL 196 (635)
T ss_dssp CEEECTTSCCCCSTTCC--------CTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECG-GGGHHH
T ss_pred CEEECCCCcCCCCChhh--------hhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCcccccccc-ccccch
Confidence 88888888776653221 6777888888888887766421 2245667788888888887765433 333322
Q ss_pred CCC----cEEEcccCCCCC-----------------------CCChhhhcCCC---------------------------
Q 006657 248 SSL----YTLDLSYNEFDN-----------------------TLVPSWLFGLS--------------------------- 273 (636)
Q Consensus 248 ~~L----~~L~Ls~n~l~~-----------------------~~~~~~l~~l~--------------------------- 273 (636)
+++ ..++++.|.++. .+.+..+..+.
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 221 123333333321 01101111111
Q ss_pred ------------------------------CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc----------
Q 006657 274 ------------------------------HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI---------- 313 (636)
Q Consensus 274 ------------------------------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~---------- 313 (636)
+++.+++.++.+... ..+.....|+.|++.+|.+.+..
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 122222222221110 11222334444554444433211
Q ss_pred ---------chhhhCCCCCCEEEccCccccccc--C------ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 314 ---------PTWLHKFTRLEYLSLRENRLQGMI--S------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 314 ---------p~~l~~l~~L~~L~L~~n~l~~~~--p------~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
+.....+++|++|++++|.+.... + ..++.+++..+...+. +..+. .+++|+.+++..++.
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~-~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFL-GLEQLEHLDFQHSNL 432 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCT-TCTTCCEEECTTSEE
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-ccccc-ccccccchhhhhccc
Confidence 112345678888888888776432 1 2677888888776643 33333 277888888887776
Q ss_pred cccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccccccccccccc
Q 006657 377 DGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVR 455 (636)
Q Consensus 377 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 455 (636)
....+ ..+..+++++.++++.|++.+..|..+..++.++.+...+.. ...+..+.....+++|+
T Consensus 433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~---------------~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---------------FQENFLPDIFTELRNLT 497 (635)
T ss_dssp ESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE---------------EGGGEECSCCTTCTTCC
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhhhhhhcc---------------cccccCchhhhhccccC
Confidence 65443 456777888888888888887777777776666544321100 01111233445677899
Q ss_pred EEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCC-CCCCeeeccCC
Q 006657 456 CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL-TFLSHLNLSDN 534 (636)
Q Consensus 456 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N 534 (636)
+|||++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|||++|++++..|..+..+ ++|++|++++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999999999999999999999999999889999999999999999999999999999988 68999999999
Q ss_pred cCcccCCCCCccCCcc
Q 006657 535 NLTGKIPLGTQLQGFN 550 (636)
Q Consensus 535 ~l~g~ip~~~~~~~~~ 550 (636)
+|+|.|...+..+|+.
T Consensus 578 p~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 578 DFACTCEHQSFLQWIK 593 (635)
T ss_dssp CBCCSGGGHHHHHHHH
T ss_pred CCcccCCcHHHHHHHH
Confidence 9999998766555554
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-41 Score=345.74 Aligned_cols=224 Identities=27% Similarity=0.462 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCcc--cccEEeCCCC--CcEEEEEcCCCCCCCCCCccccccCCCCCcc
Q 006657 30 GCIQSERKALLRFKQDLKDPANRLASWS-DGNCCT--WAGVVCNDST--GRVLELRLGNPFLHDDEPFWLEDYDDETSKL 104 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~-~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l 104 (636)
.|.++|++||++||+++.+|. .+++|+ +.+||. |.||+|+..+ ++|++|+|+++ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~------------------~l 62 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------------NL 62 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------------CC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC------------------Cc
Confidence 699999999999999998876 789998 678998 9999998654 78999999887 66
Q ss_pred ee--ecCccccCCCCCCEEeCCC-CCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 105 IG--KINPSLLDLKHLVYLDLSN-NNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 105 ~g--~i~~~l~~l~~L~~L~Ls~-n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
.| .+|+++.++++|++|++++ |.+.+. +|..++++++|++|++++|++++.+|..++++++|++|++++|.+
T Consensus 63 ~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l---- 137 (313)
T 1ogq_A 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---- 137 (313)
T ss_dssp SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE----
T ss_pred cCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc----
Confidence 67 7888888888888888884 777765 777777778888888877777777776666666666666655533
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
++.+| ..+.++++|++|++++|.++
T Consensus 138 ------------------------------------------------------~~~~p-~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 138 ------------------------------------------------------SGTLP-PSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp ------------------------------------------------------ESCCC-GGGGGCTTCCEEECCSSCCE
T ss_pred ------------------------------------------------------CCcCC-hHHhcCCCCCeEECcCCccc
Confidence 22233 23444445555555555554
Q ss_pred CCCChhhhcCCC-CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 262 NTLVPSWLFGLS-HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 262 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.+| ..+..++ +|++|++++|++++.+|..+..++ |++|++++|++++..|..+..+++|++|++++|+++
T Consensus 163 ~~~p-~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 163 GAIP-DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp EECC-GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCC-HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 4444 4444444 555555555555555555555554 555555555555555555555555555555544443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-40 Score=369.29 Aligned_cols=450 Identities=18% Similarity=0.182 Sum_probs=280.1
Q ss_pred EEEEcCCCCCCCC---CCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc
Q 006657 77 LELRLGNPFLHDD---EPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153 (636)
Q Consensus 77 ~~L~L~~~~l~~~---~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l 153 (636)
+.++++++.+++. .+..++.+++++|.+.+..|.++.++++|++|++++|.+++. .|..|+.+++|++|++++|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcC
Confidence 6788888876642 235678888899998887778889999999999999998864 577888899999999999988
Q ss_pred CCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC--CEEEee
Q 006657 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL--QVLKLS 231 (636)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L--~~L~L~ 231 (636)
+ .+|.. .+++|++|++++|++...+.+ ..+.++++|++|++++|.++.. .+..+++| ++|+++
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p-------~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFNDFDVLPVC-------KEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLD 177 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSCCSBCCCC-------GGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEE
T ss_pred C-ccCcc--ccccCCEEECCCCCccccCch-------HhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEee
Confidence 8 66766 788999999999988765443 2377888999999999888764 23334444 999999
Q ss_pred cCCC--CCCCCCccccCCC--CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCC------------------------
Q 006657 232 ACSL--HNSLPELPIANFS--SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN------------------------ 283 (636)
Q Consensus 232 ~n~l--~~~~p~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n------------------------ 283 (636)
+|.+ ++..| ..+..++ .+ .+++++|.+.+.++...+..+++|+.|++++|
T Consensus 178 ~n~l~~~~~~~-~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 178 LVSYHIKGGET-ESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp ESSCCCCSSSC-CEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred cccccccccCc-ccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 9988 66555 3444332 11 22344444433333223333333333333333
Q ss_pred ----cCccc----CCccccCCCCCCEEEccCCcCCcccchhh-----hCCCCCCEEEccCcccccccC----------cc
Q 006657 284 ----SFGGP----IPDGLQNLTSLEHLDLRSNNFISSIPTWL-----HKFTRLEYLSLRENRLQGMIS----------SV 340 (636)
Q Consensus 284 ----~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p----------~~ 340 (636)
.+.+. ++.. ...++|++|++++|.++|.+|..+ ..++.|+.++++.+.+ .+| ..
T Consensus 256 L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred ecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence 22111 0111 112356666666666666666554 3444444444444443 222 13
Q ss_pred ceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc--ccchhhhhhhhhcccc
Q 006657 341 LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG--TLPRCINNLTAMMNQE 418 (636)
Q Consensus 341 L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~~~ 418 (636)
++.|++++|.+...... ..+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+.++++|+.++
T Consensus 333 L~~L~l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred ceEEEccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 55555555544321100 124455555555555555555555555555555555555553 2233444444444332
Q ss_pred CCCccccccccceeeceEEEEeeccc-cccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCcccc
Q 006657 419 NSMETDKEYDTFTIELSILVVMKGRE-LAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVG 497 (636)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 497 (636)
.+... +.+.. ......++.|++|++++|++++.+|..+. ++|++|+|++|+++ .+|..+.
T Consensus 410 l~~N~----------------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~ 470 (562)
T 3a79_B 410 VSLNS----------------LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT 470 (562)
T ss_dssp CTTSC----------------CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT
T ss_pred CCCCc----------------CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc
Confidence 21100 00000 01122345699999999999988887665 79999999999999 7888888
Q ss_pred CCCCCCEEeCCCCCCCccCchh-ccCCCCCCeeeccCCcCcccCCCCCccC-Ccccc--ccCCCCCCCCCCCCCCCC
Q 006657 498 AMRSLESIDFSGNLLSGRIPQS-ISSLTFLSHLNLSDNNLTGKIPLGTQLQ-GFNAS--CFAGNNLCGAPLPKNCTD 570 (636)
Q Consensus 498 ~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~~~~~-~~~~~--~~~~n~lc~~~~~~~c~~ 570 (636)
.+++|++|++++|+++ .+|.. +..+++|++|++++|++.|.||..+.++ +.... .+..+.-|+.|....|..
T Consensus 471 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 9999999999999999 56665 8999999999999999999998765544 22211 111112235565666763
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=368.15 Aligned_cols=443 Identities=19% Similarity=0.168 Sum_probs=356.9
Q ss_pred CCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCC
Q 006657 87 HDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFN 166 (636)
Q Consensus 87 ~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 166 (636)
+...+..++.+++++|.+.+..+.++.++++|++|++++|.+++. .|..|+++++|++|++++|++++..|..|+++++
T Consensus 23 p~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 23 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 334456788999999999998888999999999999999999864 5678999999999999999999888899999999
Q ss_pred CCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccC
Q 006657 167 LQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 246 (636)
Q Consensus 167 L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~ 246 (636)
|++|++++|.+...+... ++++++|++|++++|.+++.. ++..+.++++|++|++++|.+++..+ ..++.
T Consensus 102 L~~L~L~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~ 171 (570)
T 2z63_A 102 LQKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRV 171 (570)
T ss_dssp CCEEECTTSCCCCSTTCS--------CTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECG-GGGHH
T ss_pred cccccccccccccCCCcc--------ccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecH-HHccc
Confidence 999999999887754321 789999999999999998742 12367889999999999999986555 67888
Q ss_pred CCCC----cEEEcccCCCCCCCChhhhcCCCCCcEEEccCC---------------------------------------
Q 006657 247 FSSL----YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN--------------------------------------- 283 (636)
Q Consensus 247 l~~L----~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n--------------------------------------- 283 (636)
+++| +.|++++|.+++ +++..+... +|++|++++|
T Consensus 172 l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred hhccchhhhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 8888 899999999985 444666655 7888888876
Q ss_pred -------------------cCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccC---ccc
Q 006657 284 -------------------SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS---SVL 341 (636)
Q Consensus 284 -------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~L 341 (636)
.+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+..... ..|
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L 327 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSL 327 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSC
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCccccccc
Confidence 333455667778899999999999887 577778888 99999999998873322 378
Q ss_pred eEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccC--ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccC
Q 006657 342 VVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQI--PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419 (636)
Q Consensus 342 ~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~ 419 (636)
+.+++++|.+.+.++. ..+++|+.|++++|.+++.. |..+..+++|++|++++|++++..+. +..+++|+.++.
T Consensus 328 ~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l 403 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF 403 (570)
T ss_dssp CEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEEC
T ss_pred CEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEc
Confidence 8999999998877766 24889999999999988654 67788899999999999998865444 777777766543
Q ss_pred CCccccccccceeeceEEEEeecccc-ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCc-CCCCcccc
Q 006657 420 SMETDKEYDTFTIELSILVVMKGREL-AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLA-GKIPENVG 497 (636)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~~~ 497 (636)
... .+.+..+ .....+++|++|++++|.+++..|..+.++++|++|++++|+++ +.+|..+.
T Consensus 404 ~~n----------------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 404 QHS----------------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp TTS----------------EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred cCC----------------ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 111 1111111 23456788999999999999999999999999999999999998 67999999
Q ss_pred CCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCCCCCCCCCCCCCC
Q 006657 498 AMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 498 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lc~~~~~~~c~ 569 (636)
.+++|++|++++|++++..|..+..+++|++|++++|++++..|.. ..+..+....+. ++|+.+.|.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----~N~~~~~~~ 535 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH-----TNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC-----SSCBCCCTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec-----CCcccCCCc
Confidence 9999999999999999999999999999999999999999876642 223334433444 445555564
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=361.07 Aligned_cols=424 Identities=21% Similarity=0.240 Sum_probs=330.9
Q ss_pred cccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 95 EDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 95 ~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
+.+++++|.+. .+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46788999998 6888776 9999999999999975 668899999999999999999988899999999999999999
Q ss_pred CCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCC--cE
Q 006657 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL--YT 252 (636)
Q Consensus 175 n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~~ 252 (636)
|++..++ . . .+++|++|++++|.+++.+ .+..++.+++|++|++++|.+++ ..+..+++| +.
T Consensus 79 N~l~~lp--~--------~-~l~~L~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 79 NKLVKIS--C--------H-PTVNLKHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISK 142 (520)
T ss_dssp SCCCEEE--C--------C-CCCCCSEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEE
T ss_pred CceeecC--c--------c-ccCCccEEeccCCcccccc-chhhhccCCcceEEEecCcccch----hhccccccceeeE
Confidence 9887532 1 2 7899999999999998742 12367889999999999999986 357778888 99
Q ss_pred EEcccCCC--CCCCChhhhcC--------------------------CCCCcEEEccCCc-------CcccCCccccCCC
Q 006657 253 LDLSYNEF--DNTLVPSWLFG--------------------------LSHLVFLDLGFNS-------FGGPIPDGLQNLT 297 (636)
Q Consensus 253 L~Ls~n~l--~~~~~~~~l~~--------------------------l~~L~~L~L~~n~-------l~~~~p~~l~~l~ 297 (636)
|++++|.+ .+..| ..+.. +++|+.|++++|. +.+.+| .++.++
T Consensus 143 L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~ 220 (520)
T 2z7x_B 143 VLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP 220 (520)
T ss_dssp EEEEECTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT
T ss_pred EEeeccccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc
Confidence 99999999 55555 55544 5556666666665 444444 567777
Q ss_pred CCCEEEccCCcCCcccchhhh---CCCCCCEEEccCcccccccCc-----------cceEEEccCCCCccccc-hHHHHh
Q 006657 298 SLEHLDLRSNNFISSIPTWLH---KFTRLEYLSLRENRLQGMISS-----------VLVVFDIGENGFSGNIP-AWIGEK 362 (636)
Q Consensus 298 ~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~-----------~L~~L~l~~n~l~g~ip-~~~~~~ 362 (636)
+|++|++++|.+++..+..+. ..++|++|++++|+++|.+|. .|+.+++++|.+ .+| .++...
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~ 298 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI 298 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc
Confidence 788888877777654332221 246899999999999986664 567899999999 777 566542
Q ss_pred h--hcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEe
Q 006657 363 L--LRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVM 440 (636)
Q Consensus 363 ~--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (636)
+ .+++.|++++|.+.+.. .+..+++|++|++++|++++.+|..+.++++|+.++..... +
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------l 360 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ----------------L 360 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC----------------C
T ss_pred cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc----------------c
Confidence 2 56999999999987432 12688999999999999999999999888888766432110 1
Q ss_pred ec--cccccccccccccEEECcCCccCccCCcc-cccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 441 KG--RELAYNTMLKLVRCMDLSGNNLSGDIPEE-MTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 441 ~~--~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
.+ ..+...+.+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip 437 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence 11 22344567889999999999999867764 88999999999999999988888765 79999999999999 788
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCC--CccCCccccccCCCCCCCCCCCCCCC
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNASCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~lc~~~~~~~c~ 569 (636)
..+..+++|++|++++|+++ .+|.. ..+..+.... +.++|+.+.|.
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~-----l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW-----LHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE-----CCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE-----CcCCCCcccCC
Confidence 88889999999999999999 57764 1222333333 34455665664
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-39 Score=358.63 Aligned_cols=400 Identities=21% Similarity=0.201 Sum_probs=296.0
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
++|+.+. ++|++|++++|.+++. .|..++++++|++|++++|++++..|..|+++++|++|++++|.+...+.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---- 91 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS---- 91 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH----
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH----
Confidence 6777664 7999999999999865 67889999999999999999998888999999999999999998876532
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
..++++++|++|++++|.+++.+. +..+..+++|++|++++|.+.+.+|...+.++++|++|++++|.+++.++
T Consensus 92 ----~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 165 (549)
T 2z81_A 92 ----SWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS- 165 (549)
T ss_dssp ----HHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-
T ss_pred ----HHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-
Confidence 237899999999999999986421 22578899999999999997667776689999999999999999997666
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCcc-ccCCCCCCEEEccCCcCCccc--c-hhhhCCCCCCEEEccCcccccccC----
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNFISSI--P-TWLHKFTRLEYLSLRENRLQGMIS---- 338 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~L~L~~n~l~~~~p---- 338 (636)
..+..+++|++|++++|.+. .+|.. +..+++|++|++++|++++.. | .....+++|++|++++|.+++..+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 88999999999999999986 44544 367899999999999998742 2 223457899999999999887543
Q ss_pred ------ccceEEEccCCCCcccc--------------------------ch--------HHHHhhhcCceEecCCCcCcc
Q 006657 339 ------SVLVVFDIGENGFSGNI--------------------------PA--------WIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 339 ------~~L~~L~l~~n~l~g~i--------------------------p~--------~~~~~~~~L~~L~L~~n~l~~ 378 (636)
..++.+++++|.+.|.. |. .+.....+|+.|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 36788888888776520 10 11223568889999999987
Q ss_pred cCcccc-CCCCCCCEEEccCccCccccchh---hhhhhhhccccCCCccccccccceeeceEEEEeeccc--cccccccc
Q 006657 379 QIPAEL-CRLTSLHILDLSHNNFSGTLPRC---INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRE--LAYNTMLK 452 (636)
Q Consensus 379 ~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 452 (636)
.+|..+ ..+++|++|++++|++++.+|.. ++.+++|+.++.....- .+.. ......++
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l----------------~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL----------------RSMQKTGEILLTLK 387 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC----------------CCHHHHHHHGGGCT
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc----------------cccccchhhhhcCC
Confidence 677766 57899999999999999877543 56666666554321100 0000 01234566
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccc------------------cCCCCCCEEeCCCCCCCc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV------------------GAMRSLESIDFSGNLLSG 514 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~------------------~~l~~L~~L~Ls~N~l~~ 514 (636)
+|++||+++|+++ .+|..+..+++|++|++++|+++ .+|..+ ..+++|++|++++|+++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK- 464 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-
Confidence 6777777777777 56777777777777777777765 333322 24555666666666655
Q ss_pred cCchhccCCCCCCeeeccCCcCcccCC
Q 006657 515 RIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 515 ~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
.+|. ...+++|++|++++|++++..|
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred cCCC-cccCccCCEEecCCCccCCcCH
Confidence 4444 3445566666666666665444
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.7e-38 Score=348.10 Aligned_cols=424 Identities=19% Similarity=0.222 Sum_probs=321.3
Q ss_pred cccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 95 EDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 95 ~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
+.++++++.+.+ +|..+. ++|++|++++|.+++. .|..++++++|++|++++|++++..|..|+++++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 567888999885 887765 8999999999999975 667899999999999999999988899999999999999999
Q ss_pred CCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCC--cE
Q 006657 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL--YT 252 (636)
Q Consensus 175 n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~~ 252 (636)
|++...+ . . .+++|++|++++|.+++.+. +..+.++++|++|++++|.+++. .+..+++| +.
T Consensus 110 N~l~~lp--~--------~-~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~ 173 (562)
T 3a79_B 110 NRLQNIS--C--------C-PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSC 173 (562)
T ss_dssp SCCCEEC--S--------C-CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEE
T ss_pred CcCCccC--c--------c-ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCccccC----chhhhhhceeeE
Confidence 9887532 1 2 78999999999999987641 23678899999999999999752 35555566 99
Q ss_pred EEcccCCC--CCCCChhhhcCCC-CCcEEEccCCcCcccCCc-cccCCCCCCEEEccCCc--------------------
Q 006657 253 LDLSYNEF--DNTLVPSWLFGLS-HLVFLDLGFNSFGGPIPD-GLQNLTSLEHLDLRSNN-------------------- 308 (636)
Q Consensus 253 L~Ls~n~l--~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------------------- 308 (636)
|++++|.+ ++..+ ..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+
T Consensus 174 L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 174 ILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 99999999 76665 6666654 122567888888876654 34566777777777763
Q ss_pred --------CCcc----cchhhhCCCCCCEEEccCcccccccCc--------c---ceEEEccCCCCccccc-hHHHHh--
Q 006657 309 --------FISS----IPTWLHKFTRLEYLSLRENRLQGMISS--------V---LVVFDIGENGFSGNIP-AWIGEK-- 362 (636)
Q Consensus 309 --------l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~--------~---L~~L~l~~n~l~g~ip-~~~~~~-- 362 (636)
+.+. ++..+ ..++|++|++++|.++|.+|. . |+.++++.+.+ .+| .++...
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred EEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 1111 11111 234899999999999987774 2 34555666666 566 344332
Q ss_pred hhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
..+++.|++++|.+.... ....+++|++|++++|++++.+|..+.++++|+.++..... +.+
T Consensus 330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------l~~ 391 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG----------------LKN 391 (562)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC----------------CCB
T ss_pred cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC----------------cCC
Confidence 256999999999986432 12688999999999999999999999888888766532110 111
Q ss_pred --cccccccccccccEEECcCCccCccCCc-ccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchh
Q 006657 443 --RELAYNTMLKLVRCMDLSGNNLSGDIPE-EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 443 --~~~~~~~~~~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
..+.....+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence 1223456778899999999999986665 488999999999999999988887665 79999999999999 78887
Q ss_pred ccCCCCCCeeeccCCcCcccCCCC--CccCCccccccCCCCCCCCCCCCCCC
Q 006657 520 ISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNASCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 520 l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~lc~~~~~~~c~ 569 (636)
+..+++|++|++++|+++ .+|.. ..+..+... .+.++|+.+.|.
T Consensus 469 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L-----~l~~N~~~c~c~ 514 (562)
T 3a79_B 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI-----WLHDNPWDCTCP 514 (562)
T ss_dssp TTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCE-----ECCSCCBCCCHH
T ss_pred hcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEE-----EecCCCcCCCcc
Confidence 889999999999999999 57764 222233323 344556666664
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-37 Score=333.77 Aligned_cols=367 Identities=23% Similarity=0.243 Sum_probs=260.9
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCC
Q 006657 119 VYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSL 198 (636)
Q Consensus 119 ~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~ 198 (636)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.....+ ..+.++++
T Consensus 13 ~~~~c~~~~l~--~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-------~~~~~l~~ 80 (455)
T 3v47_A 13 YNAICINRGLH--QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-------NTFRGLSS 80 (455)
T ss_dssp TEEECCSSCCS--SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-------TTTTTCTT
T ss_pred cccCcCCCCcc--cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc-------cccccccc
Confidence 46778888887 4776 3 48899999999999988899999999999999999976432111 22667777
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCC-ccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 277 (636)
|++|++++|.+++.. +..+..+++|++|++++|.+++.++. ..+.++++|++|++++|.+++..|...+.++++|++
T Consensus 81 L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 81 LIILKLDYNQFLQLE--TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp CCEEECTTCTTCEEC--TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred CCEEeCCCCccCccC--hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 777777777776552 12456667777777777776653331 225666667777777776664444233666666666
Q ss_pred EEccCCcCcccCCccccCC--CCCCEEEccCCcCCcccchhh--------hCCCCCCEEEccCcccccccCccceEEEcc
Q 006657 278 LDLGFNSFGGPIPDGLQNL--TSLEHLDLRSNNFISSIPTWL--------HKFTRLEYLSLRENRLQGMISSVLVVFDIG 347 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~ 347 (636)
|++++|++++..|..+..+ .+|+.|++++|.+.+..+..+ ..+++|++ |+++
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~------------------L~Ls 220 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT------------------LDLS 220 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE------------------EECT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee------------------EecC
Confidence 7766666666666655544 566666666666654433221 12344444 4555
Q ss_pred CCCCccccchHHHHh--hhcCceEecCCCcCccc----------CccccC--CCCCCCEEEccCccCccccchhhhhhhh
Q 006657 348 ENGFSGNIPAWIGEK--LLRNLILRLRSNKFDGQ----------IPAELC--RLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 348 ~n~l~g~ip~~~~~~--~~~L~~L~L~~n~l~~~----------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
+|.+.+.+|..+... ..+++.|++++|...+. .+..+. ..++|++|++++|++++..|..+..+++
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 300 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence 555555566655542 16677777777755432 112222 2368999999999999888887776655
Q ss_pred hccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCC
Q 006657 414 MMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIP 493 (636)
Q Consensus 414 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip 493 (636)
|++|++++|++++..|..+.++++|++|+|++|++++..|
T Consensus 301 ----------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 301 ----------------------------------------LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp ----------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred ----------------------------------------CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 8899999999999989999999999999999999998889
Q ss_pred ccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCC
Q 006657 494 ENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGN 557 (636)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n 557 (636)
..++.+++|++|+|++|++++..|..+..+++|++|++++|++++..+.. ..+..+....+.+|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 99999999999999999999999999999999999999999999744332 23444444455555
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.3e-37 Score=330.81 Aligned_cols=349 Identities=19% Similarity=0.181 Sum_probs=281.3
Q ss_pred CcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc
Q 006657 74 GRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l 153 (636)
.+++.|+++++ .+.+ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+
T Consensus 42 ~~L~~L~Ls~n------------------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 42 ATLTSLDCHNS------------------SITD-MT-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp TTCCEEECCSS------------------CCCC-CT-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCC
T ss_pred CCCCEEEccCC------------------Cccc-Ch-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCC
Confidence 45778888776 5554 34 68889999999999999985 44 78899999999999999
Q ss_pred CCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecC
Q 006657 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 233 (636)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n 233 (636)
++. | ++++++|++|++++|++...+ +.++++|++|++++|.+++.+ ++.+++|++|++++|
T Consensus 98 ~~~-~--~~~l~~L~~L~L~~N~l~~l~-----------~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 98 TNL-D--VTPLTKLTYLNCDTNKLTKLD-----------VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLN 158 (457)
T ss_dssp SCC-C--CTTCTTCCEEECCSSCCSCCC-----------CTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTC
T ss_pred cee-e--cCCCCcCCEEECCCCcCCeec-----------CCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCC
Confidence 864 3 888999999999999886642 678889999999999988862 677899999999999
Q ss_pred CCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc
Q 006657 234 SLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI 313 (636)
Q Consensus 234 ~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 313 (636)
+..+.++ +..+++|+.|++++|++++ ++ +..+++|++|++++|++++. .++.+++|++|++++|++++ +
T Consensus 159 ~~~~~~~---~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 159 KKITKLD---VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp SCCCCCC---CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C
T ss_pred Ccccccc---cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-c
Confidence 7666653 7788999999999999985 44 77888999999999999865 37888999999999999987 5
Q ss_pred chhhhCCCCCCEEEccCcccccccCc---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCC
Q 006657 314 PTWLHKFTRLEYLSLRENRLQGMISS---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSL 390 (636)
Q Consensus 314 p~~l~~l~~L~~L~L~~n~l~~~~p~---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 390 (636)
| +..+++|++|++++|++++..+. .++.++++.| +|+.|++++|.+.+.+| ++.+++|
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccC
Confidence 5 78889999999999998876543 4666666554 45677888898888877 5678999
Q ss_pred CEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCc
Q 006657 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE 470 (636)
Q Consensus 391 ~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~ 470 (636)
+.|++++|+..+.+|....+++.+. ....+.|++|++++|++++. +
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~--------------------------------l~~~~~L~~L~L~~N~l~~l-~- 334 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELD--------------------------------LSQNPKLVYLYLNNTELTEL-D- 334 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCC--------------------------------CTTCTTCCEEECTTCCCSCC-C-
T ss_pred CEEECCCCcccceeccCCCcceEec--------------------------------hhhcccCCEEECCCCccccc-c-
Confidence 9999999998888886443333221 22346699999999999984 3
Q ss_pred ccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 471 EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 471 ~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
++++++|+.|++++|++++ ++.|+.|++++|+++|. ..+..|+.+++++|+++|.+|..
T Consensus 335 -l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 8999999999999999986 25678889999999986 34567889999999999999974
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.6e-37 Score=331.10 Aligned_cols=368 Identities=23% Similarity=0.270 Sum_probs=214.6
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCC-------------CEEeCCCCCCCCCCCc
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHL-------------VYLDLSNNNFENNQIP 134 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L-------------~~L~Ls~n~l~~~~ip 134 (636)
.++++++++++.+ +.+| ..++.+++++|.+.|.+|.+++++++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~--lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--LP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC--CC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc--CC
Confidence 4577778877765 3333 234555666666666666666666653 667777766663 44
Q ss_pred hhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCC
Q 006657 135 VFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD 214 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~ 214 (636)
.. .++|++|++++|.+++ +|.. .++|++|++++|.+...+. + .++|++|++++|.+++.|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----------~--~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----------L--PPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----------C--CTTCCEEECCSSCCSSCC-
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----------C--CCCCCEEECcCCCCCCCc-
Confidence 42 3566777777776664 5543 2566777777666554210 0 156777777777766654
Q ss_pred hhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCcccc
Q 006657 215 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294 (636)
Q Consensus 215 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 294 (636)
.+..+++|++|++++|++++ +|. . .++|++|++++|.+++ +| .++++++|++|++++|++++ +|...
T Consensus 148 ---~~~~l~~L~~L~l~~N~l~~-lp~-~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 148 ---ELQNSSFLKIIDVDNNSLKK-LPD-L---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp ---CCTTCTTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred ---ccCCCCCCCEEECCCCcCcc-cCC-C---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 25666777777777777663 442 1 2467777777777764 43 36667777777777777664 44322
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc--cCccceEEEccCCCCccccchHHHHhhhcCceEecC
Q 006657 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM--ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLR 372 (636)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~ 372 (636)
++|++|++++|.++ .+| .++.+++|++|++++|++++. .+..++.|++++|.+.+ +|.. .++|+.|+++
T Consensus 215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls 285 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVS 285 (454)
T ss_dssp --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECC
T ss_pred --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcc----cCcCCEEECc
Confidence 46777777777766 455 366677777777777776652 33466777777776664 4443 3566777777
Q ss_pred CCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccc
Q 006657 373 SNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLK 452 (636)
Q Consensus 373 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (636)
+|++++ +|.. .++|++|++++|++++ ++. ..+
T Consensus 286 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~-------------------------------------------~~~ 317 (454)
T 1jl5_A 286 ENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD-------------------------------------------LPP 317 (454)
T ss_dssp SSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC-------------------------------------------CCT
T ss_pred CCccCc-ccCc---CCcCCEEECcCCcCCc-ccC-------------------------------------------CcC
Confidence 776665 1111 1466677777776663 111 012
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCc--cCchhccCC-------
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSG--RIPQSISSL------- 523 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l------- 523 (636)
.|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 48899999999996 6664 588999999999998 5776 47899999999999998 788888877
Q ss_pred ------CCCCeeeccCCcCcc--cCCC
Q 006657 524 ------TFLSHLNLSDNNLTG--KIPL 542 (636)
Q Consensus 524 ------~~L~~L~ls~N~l~g--~ip~ 542 (636)
++|++|++++|++++ .+|.
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ---------------------------
T ss_pred ccccccCcCCEEECCCCcCCccccchh
Confidence 889999999999998 7775
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=335.24 Aligned_cols=346 Identities=22% Similarity=0.218 Sum_probs=233.9
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCC
Q 006657 119 VYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSL 198 (636)
Q Consensus 119 ~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~ 198 (636)
+.++.+++.++ .+|..+ .+++++|++++|++++..|..|.++++|++|++++|.+......
T Consensus 14 ~~v~c~~~~l~--~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--------------- 74 (477)
T 2id5_A 14 RAVLCHRKRFV--AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG--------------- 74 (477)
T ss_dssp TEEECCSCCCS--SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------------
T ss_pred CEEEeCCCCcC--cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh---------------
Confidence 45666666666 356544 25677777777777766666677777777777776655432111
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
.+..+++|++|+|++|.++ .+|...+.++++|++|++++|.+.+..+ ..|.++++|++|
T Consensus 75 -------------------~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L 133 (477)
T 2id5_A 75 -------------------AFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSL 133 (477)
T ss_dssp -------------------TTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred -------------------hhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEE
Confidence 2333444444444444444 2332345566666666666666653333 566666677777
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchH
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAW 358 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~ 358 (636)
++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+..+. .
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~------------------~ 195 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY------------------S 195 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT------------------C
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh------------------h
Confidence 7777776666666667777777777777777665556677777777777777766532211 1
Q ss_pred HHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEE
Q 006657 359 IGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV 438 (636)
Q Consensus 359 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 438 (636)
+ ..+++|+.|++++|.+.+.+|.......+|+.|++++|++++..+..+.++++
T Consensus 196 ~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------------------------- 249 (477)
T 2id5_A 196 F-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------------------------- 249 (477)
T ss_dssp S-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT-------------------------
T ss_pred c-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc-------------------------
Confidence 1 12566777777777666666666666668888888888888443345554443
Q ss_pred EeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCch
Q 006657 439 VMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ 518 (636)
Q Consensus 439 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (636)
|+.|+|++|.+++..+..+.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+.
T Consensus 250 ---------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 250 ---------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp ---------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred ---------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 78889999988877778888899999999999999988888899999999999999999987777
Q ss_pred hccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 519 SISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 519 ~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
.|..+++|++|++++|++.|.++..+.+++.....+.++ ..|..|
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred HcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 888889999999999999988876665555544556666 566544
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8e-36 Score=322.97 Aligned_cols=347 Identities=29% Similarity=0.383 Sum_probs=281.4
Q ss_pred CcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc
Q 006657 74 GRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l 153 (636)
.+++.|++.++ .+. .+| .+..+++|++|++++|.+++ +|. ++++++|++|++++|.+
T Consensus 46 ~~l~~L~l~~~------------------~i~-~l~-~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l 102 (466)
T 1o6v_A 46 DQVTTLQADRL------------------GIK-SID-GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQI 102 (466)
T ss_dssp HTCCEEECCSS------------------CCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC
T ss_pred ccccEEecCCC------------------CCc-cCc-chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCcc
Confidence 35778888776 332 244 37788999999999999985 454 88999999999999999
Q ss_pred CCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecC
Q 006657 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 233 (636)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n 233 (636)
.+..| ++++++|++|++++|.+...+ .+.++++|++|++++|.+++.+ .+..+++|++|+++ +
T Consensus 103 ~~~~~--~~~l~~L~~L~L~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~ 165 (466)
T 1o6v_A 103 ADITP--LANLTNLTGLTLFNNQITDID----------PLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-N 165 (466)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCCG----------GGTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-E
T ss_pred ccChh--hcCCCCCCEEECCCCCCCCCh----------HHcCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-C
Confidence 86544 889999999999999876642 2778899999999999888765 47788999999997 4
Q ss_pred CCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc
Q 006657 234 SLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI 313 (636)
Q Consensus 234 ~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 313 (636)
.+.+ ++ .+.++++|+.|++++|.+++ + ..+..+++|++|++++|.+++..| ++.+++|++|++++|++++.
T Consensus 166 ~~~~-~~--~~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 166 QVTD-LK--PLANLTTLERLDISSNKVSD-I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp SCCC-CG--GGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred cccC-ch--hhccCCCCCEEECcCCcCCC-C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 4543 23 48888999999999999874 3 347888999999999999886655 77889999999999988753
Q ss_pred chhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEE
Q 006657 314 PTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHIL 393 (636)
Q Consensus 314 p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 393 (636)
..+..+++|++|++++|++++. +. +. .+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~-------------------~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNL-------------------AP-LS-GLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCC-------------------GG-GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred -hhhhcCCCCCEEECCCCccccc-------------------hh-hh-cCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 3578888999998888887732 22 22 38899999999999986544 8899999999
Q ss_pred EccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccc
Q 006657 394 DLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT 473 (636)
Q Consensus 394 ~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~ 473 (636)
++++|++++..| +..+ ++|+.|++++|++++..| +.
T Consensus 293 ~L~~n~l~~~~~--~~~l----------------------------------------~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNL----------------------------------------KNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp ECCSSCCSCCGG--GGGC----------------------------------------TTCSEEECCSSCCSCCGG--GG
T ss_pred EcCCCcccCchh--hcCC----------------------------------------CCCCEEECcCCcCCCchh--hc
Confidence 999999986543 3333 348999999999997766 78
Q ss_pred cccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 474 NLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 474 ~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
.+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|++|++++|++++ +|.
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 999999999999999975 468999999999999999998877 8899999999999999997 343
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-36 Score=336.13 Aligned_cols=436 Identities=21% Similarity=0.194 Sum_probs=284.0
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
++|+.+. +++++|||++|.|+.. .|..|.++++|++|+|++|++++..|.+|.++++|++|+|++|++...+..
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~--- 118 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG--- 118 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG---
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH---
Confidence 5666552 4799999999999954 456899999999999999999987788899999999999999998765432
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC-CCCccccCCCCCcEEEcccCCCCCCCC
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS-LPELPIANFSSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (636)
.+.++++|++|++++|.+++.+.. .++.+++|++|++++|.+++. +| ..+..+++|++|++++|++++. +
T Consensus 119 -----~f~~L~~L~~L~Ls~N~l~~l~~~--~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~ 189 (635)
T 4g8a_A 119 -----AFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSI-Y 189 (635)
T ss_dssp -----GGTTCTTCCEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEE-C
T ss_pred -----HhcCCCCCCEEECCCCcCCCCChh--hhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccCcccccc-c
Confidence 378999999999999999988542 478899999999999999753 45 6788999999999999999854 4
Q ss_pred hhhhcCCCC----CcEEEccCCcCcccCCccccCCCCCCEEEccCC----------------------------------
Q 006657 266 PSWLFGLSH----LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN---------------------------------- 307 (636)
Q Consensus 266 ~~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n---------------------------------- 307 (636)
+..+..+.+ ...++++.|.++...+..+ ....++.+++.+|
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 366654433 3357777777654322221 1122223333222
Q ss_pred ------------------------------------------------cCCcccchhhhCCCCCCEEEccCcccccccC-
Q 006657 308 ------------------------------------------------NFISSIPTWLHKFTRLEYLSLRENRLQGMIS- 338 (636)
Q Consensus 308 ------------------------------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p- 338 (636)
.+... ..+....+++.|++.+|.+.+..+
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc
Confidence 22111 112223344555555554433221
Q ss_pred --ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCc--ccCccccCCCCCCCEEEccCccCccccchhhhhhhhh
Q 006657 339 --SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD--GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414 (636)
Q Consensus 339 --~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 414 (636)
..++.+++..|...+..+. . .+++|+.++++.|.+. +..+..+..+.+|+.++++.|...+ ++..+..++.+
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~~-~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFSE-V--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCCC-C--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred cchhhhhcccccccCCCCccc-c--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 1334444444433321111 1 1445555555555543 2233344444455555555554432 22333334443
Q ss_pred ccccCCC-----ccccc-cccceeeceE---EEEeeccccccccccccccEEECcCCcc-CccCCcccccccCCCeEeCC
Q 006657 415 MNQENSM-----ETDKE-YDTFTIELSI---LVVMKGRELAYNTMLKLVRCMDLSGNNL-SGDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 415 ~~~~~~~-----~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~L~Ls~N~l-~g~~p~~~~~l~~L~~L~Ls 484 (636)
+.+.... ..+.. .......... ...+.+..+.....++.++.|++++|++ .+.+|..+..+++|++|+|+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 3322100 00000 0000000000 0112333344556678899999999985 44678899999999999999
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCc-c-CCccccccCCCCCCCC
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQ-L-QGFNASCFAGNNLCGA 562 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~-~-~~~~~~~~~~n~lc~~ 562 (636)
+|++++..|..|.++++|++|+|++|++++..|..|..+++|++||+++|++++..|..-. + ..+... .+.++
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L-----~L~~N 577 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-----NLTQN 577 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE-----ECTTC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE-----EeeCC
Confidence 9999999999999999999999999999999999999999999999999999988775311 1 222222 45566
Q ss_pred CCCCCCC
Q 006657 563 PLPKNCT 569 (636)
Q Consensus 563 ~~~~~c~ 569 (636)
|+.|+|.
T Consensus 578 p~~C~C~ 584 (635)
T 4g8a_A 578 DFACTCE 584 (635)
T ss_dssp CBCCSGG
T ss_pred CCcccCC
Confidence 7888885
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-36 Score=319.28 Aligned_cols=333 Identities=20% Similarity=0.234 Sum_probs=238.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCCch-hhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPV-FLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
..++++++|++++|.++. +|. .+..+++|++|++++|.+.+..|..++++++|++|++++|.+...+..
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 111 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-------- 111 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT--------
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH--------
Confidence 346788888888888773 554 367788888888888888766666777777777777777665443211
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+..+++|++|++++|.++ .+|...+.++++|++|++++|.++ .+++..+.+
T Consensus 112 --------------------------~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 163 (390)
T 3o6n_A 112 --------------------------VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA 163 (390)
T ss_dssp --------------------------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSS
T ss_pred --------------------------HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccC
Confidence 2344556666666666665 444344677777888888887776 344366777
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+++|++|++++|++++. .+..+++|++|++++|.+++. ...++|++|++++|.+..
T Consensus 164 l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~---------------- 219 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV---------------- 219 (390)
T ss_dssp CTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE----------------
T ss_pred CCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeee----------------
Confidence 77777777777777643 245567777777777766532 223466677776666652
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
+|... .++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++
T Consensus 220 ---~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------------------ 273 (390)
T 3o6n_A 220 ---VRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR------------------ 273 (390)
T ss_dssp ---EECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS------------------
T ss_pred ---ccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc------------------
Confidence 23221 46788889999988864 56888899999999999999877877765554
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
|++|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|++|++++|+
T Consensus 274 ----------------------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 274 ----------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ----------------------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred ----------------------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 7889999999984 5677788999999999999998 677778889999999999999
Q ss_pred CCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCC
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCG 561 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~ 561 (636)
++.. | +..+++|++|++++|++.|.... ..+..+....+.++ ..|.
T Consensus 330 i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 330 IVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp CCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred ccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence 9854 3 67889999999999999986543 23444444455555 4444
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.8e-36 Score=332.10 Aligned_cols=335 Identities=20% Similarity=0.213 Sum_probs=245.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
.+++++.|++++|.+... .+..++.+++|++|++++|.+++..|..|+.+++|++|++++|.+...+..
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------- 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---------- 117 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----------
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH----------
Confidence 467888888888888743 334567788888888888888877777777777777777777766543211
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
.++.+++|++|+|++|.++ .+|...+.++++|++|++++|.+++ +++..+.+++
T Consensus 118 ------------------------~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 171 (597)
T 3oja_B 118 ------------------------VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATT 171 (597)
T ss_dssp ------------------------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCT
T ss_pred ------------------------HHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCC
Confidence 2344555666666666655 3443446777777888888777764 3336677777
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSG 353 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g 353 (636)
+|++|++++|.+++. + ++.+++|+.|++++|.+++. ...++|++|++++|.+..
T Consensus 172 ~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~------------------ 225 (597)
T 3oja_B 172 SLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV------------------ 225 (597)
T ss_dssp TCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCE------------------
T ss_pred cCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccc------------------
Confidence 777777777777653 2 45567777777777766532 233466777777766652
Q ss_pred ccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceee
Q 006657 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIE 433 (636)
Q Consensus 354 ~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 433 (636)
+|..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+.++++
T Consensus 226 -~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------------------- 279 (597)
T 3oja_B 226 -VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-------------------- 279 (597)
T ss_dssp -EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS--------------------
T ss_pred -ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccC--------------------
Confidence 22221 3578888888888886 367888899999999999999888887766554
Q ss_pred ceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 434 LSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
|+.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|+++
T Consensus 280 --------------------L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 280 --------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp --------------------CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred --------------------CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 7889999999985 6777788999999999999999 68888899999999999999998
Q ss_pred ccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
+. | +..+++|++|++++|+++|.++. ..+..+....+.++ ..|+.+
T Consensus 338 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 338 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred Cc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 65 3 67788999999999999987654 34556666667777 778753
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-35 Score=318.92 Aligned_cols=340 Identities=19% Similarity=0.195 Sum_probs=260.6
Q ss_pred eeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccc
Q 006657 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSF 184 (636)
Q Consensus 105 ~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 184 (636)
.+..+.+++++++|++|++++|.+++ +| .++.+++|++|++++|++++. | ++.+++|++|++++|.+...+
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---
Confidence 34445578899999999999999995 56 688999999999999999964 4 899999999999999887642
Q ss_pred ccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCC
Q 006657 185 LYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 264 (636)
Q Consensus 185 ~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (636)
++++++|++|++++|.+++.+ +..+++|++|++++|++++ ++ ++++++|++|++++|...+.+
T Consensus 102 --------~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 --------VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp --------CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC
T ss_pred --------cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc
Confidence 678999999999999998863 6789999999999999986 33 788999999999999766665
Q ss_pred ChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEE
Q 006657 265 VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVF 344 (636)
Q Consensus 265 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L 344 (636)
.+..+++|++|++++|++++ +| ++.+++|++|++++|++++. .++.+++|++|++++|++++
T Consensus 165 ---~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--------- 226 (457)
T 3bz5_A 165 ---DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--------- 226 (457)
T ss_dssp ---CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC---------
T ss_pred ---ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc---------
Confidence 37788999999999999986 45 88899999999999999865 37888999999999998884
Q ss_pred EccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCE----------EEccCccCccccchhhhhhhhh
Q 006657 345 DIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHI----------LDLSHNNFSGTLPRCINNLTAM 414 (636)
Q Consensus 345 ~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~----------L~Ls~N~l~~~~p~~l~~l~~L 414 (636)
+| +. .+++|+.|++++|++++..+ +.+++|+. |++++|++.|.+|. +
T Consensus 227 ----------ip--~~-~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~----- 283 (457)
T 3bz5_A 227 ----------ID--VT-PLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--E----- 283 (457)
T ss_dssp ----------CC--CT-TCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--T-----
T ss_pred ----------cC--cc-ccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCcccc--c-----
Confidence 23 11 25666666666666665432 33444444 44555554444441 2
Q ss_pred ccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCc--------ccccccCCCeEeCCCc
Q 006657 415 MNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE--------EMTNLLALQSLNLSHN 486 (636)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~--------~~~~l~~L~~L~Ls~N 486 (636)
.++.|+.|++++|...+.+|. .++++++|++|++++|
T Consensus 284 -----------------------------------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 284 -----------------------------------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp -----------------------------------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred -----------------------------------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 234477788888877666654 2556678899999999
Q ss_pred cCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCCCCCC
Q 006657 487 FLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCG 561 (636)
Q Consensus 487 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~ 561 (636)
++++. + ++.+++|+.|++++|++++ ++.|..|++++|.++|. + .+..+....+..|.+.|
T Consensus 329 ~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-~---~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 329 ELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-G---QTITMPKETLTNNSLTI 388 (457)
T ss_dssp CCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-E---EEEECCCBCCBTTBEEE
T ss_pred ccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-c---eeeecCccccccCcEEE
Confidence 99873 3 8888999999999999886 24577788899999886 2 33344444555555544
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.6e-36 Score=320.00 Aligned_cols=352 Identities=22% Similarity=0.216 Sum_probs=202.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCC-------------CeEeccCCCCCCc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL-------------QYLDLSIDTHNPI 180 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~~~~~ 180 (636)
+.++|++|++++|.+ + .+|..++++++|++|++++|.+.|.+|..++++++| ++|++++|.+.+.
T Consensus 9 ~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 345666666666666 2 366666666666666666666666666666665543 6666666665543
Q ss_pred ccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCC
Q 006657 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 260 (636)
Q Consensus 181 ~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l 260 (636)
+. -.++|++|++++|.+++.|. .+++|++|++++|++++ ++. + .++|++|++++|++
T Consensus 87 p~------------~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~-l~~--~--~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 87 PE------------LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKA-LSD--L--PPLLEYLGVSNNQL 143 (454)
T ss_dssp CS------------CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSC-CCS--C--CTTCCEEECCSSCC
T ss_pred CC------------CcCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCc-ccC--C--CCCCCEEECcCCCC
Confidence 21 12456666666666666543 13566666666666653 321 1 14666666666666
Q ss_pred CCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc--ccC
Q 006657 261 DNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG--MIS 338 (636)
Q Consensus 261 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p 338 (636)
++ +| .++++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++++++|++|++++|++++ ..+
T Consensus 144 ~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~ 214 (454)
T 1jl5_A 144 EK-LP--ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP 214 (454)
T ss_dssp SS-CC--CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred CC-Cc--ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc
Confidence 53 44 36666666666666666664 44332 466666666666664 34 46666666666666666665 233
Q ss_pred ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhcccc
Q 006657 339 SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQE 418 (636)
Q Consensus 339 ~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~ 418 (636)
..|+.|++++|.+. .+|. +. .+++|++|++++|++++ +|.. .++|++|++++|++++ +|....+++.+ +
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L---~ 283 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELPQSLTFL---D 283 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEE---E
T ss_pred CcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcccCcCCEE---E
Confidence 46666666666666 5663 33 36667777777776664 3432 3566777777776664 44433222221 1
Q ss_pred CCCccccccccceeeceEEEEeeccccccc-cccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCcccc
Q 006657 419 NSMETDKEYDTFTIELSILVVMKGRELAYN-TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVG 497 (636)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 497 (636)
.+. ...... ...+.|++|++++|++++ ++. -.++|++|++++|++++ +|..
T Consensus 284 ls~---------------------N~l~~l~~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~-- 335 (454)
T 1jl5_A 284 VSE---------------------NIFSGLSELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL-- 335 (454)
T ss_dssp CCS---------------------SCCSEESCCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC--
T ss_pred CcC---------------------CccCcccCcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc--
Confidence 100 000000 012458999999999985 332 12589999999999996 6764
Q ss_pred CCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc--cCCCC
Q 006657 498 AMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG--KIPLG 543 (636)
Q Consensus 498 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~ 543 (636)
+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..
T Consensus 336 -~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 336 -PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp -CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred -CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 589999999999999 4676 47899999999999999 77753
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-34 Score=311.94 Aligned_cols=349 Identities=26% Similarity=0.348 Sum_probs=289.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..++++++|+++++.+. .+|. +..+++|++|++++|.+++. |. ++++++|++|++++|.+...+ .
T Consensus 43 ~~l~~l~~L~l~~~~i~--~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~----------~ 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK--SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADIT----------P 107 (466)
T ss_dssp HHHHTCCEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG----------G
T ss_pred hHhccccEEecCCCCCc--cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccCh----------h
Confidence 34679999999999998 3664 78899999999999999965 44 999999999999999886642 1
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+.++++|++|++++|.+++.+. +..+++|++|++++|.+.+ ++ .+.++++|+.|+++ |.+.+ + ..+.++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~-~~~~~-~--~~~~~l 176 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFG-NQVTD-L--KPLANL 176 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEE-ESCCC-C--GGGTTC
T ss_pred hcCCCCCCEEECCCCCCCCChH----HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecC-CcccC-c--hhhccC
Confidence 7889999999999999988753 7889999999999999985 44 48899999999997 55543 3 338899
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~ 352 (636)
++|++|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|++++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------------- 235 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD----------------- 235 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-----------------
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-----------------
Confidence 9999999999999854 358899999999999999987665 7788999999999998872
Q ss_pred cccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccccee
Q 006657 353 GNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432 (636)
Q Consensus 353 g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 432 (636)
++ .+. .+++|+.|++++|.+++..| +..+++|+.|++++|++++..+ +..+
T Consensus 236 --~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l--------------------- 286 (466)
T 1o6v_A 236 --IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL--------------------- 286 (466)
T ss_dssp --CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC---------------------
T ss_pred --ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC---------------------
Confidence 22 222 38899999999999997655 8899999999999999986443 4433
Q ss_pred eceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCC
Q 006657 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512 (636)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 512 (636)
+.|+.|++++|++++..| ++.+++|++|++++|++++..| +..+++|++|++++|++
T Consensus 287 -------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 287 -------------------TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp -------------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred -------------------CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 348999999999997544 8899999999999999998766 78999999999999999
Q ss_pred CccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCCCCCCCC
Q 006657 513 SGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAP 563 (636)
Q Consensus 513 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~~~ 563 (636)
++. ..+..+++|++|++++|++++..| ...+..+....+.+|.+.+.|
T Consensus 344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 344 SDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred CCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCc
Confidence 975 468999999999999999999887 445556666666666444444
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=315.98 Aligned_cols=271 Identities=20% Similarity=0.218 Sum_probs=199.3
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
.+|..+. +++++|+|++|.+++. .|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+...+...
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 99 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV-- 99 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS--
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc--
Confidence 3454442 5889999999999865 5778899999999999999999888999999999999999999887654322
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
+.++++|++|++++|.+++.+. ..+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.++ .+++
T Consensus 100 ------~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 100 ------FTGLSNLTKLDISENKIVILLD--YMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLT-SIPT 169 (477)
T ss_dssp ------STTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCS-SCCH
T ss_pred ------ccCCCCCCEEECCCCccccCCh--hHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCc-ccCh
Confidence 6778888888888888876632 256778888888888888876555 67888888888888888887 4565
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEc
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDI 346 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l 346 (636)
..+.++++|++|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~------------ 237 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT------------ 237 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC------------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc------------
Confidence 77888888888888888888777777888888888888888777777666555567777777776665
Q ss_pred cCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhh
Q 006657 347 GENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411 (636)
Q Consensus 347 ~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 411 (636)
.+|......+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+.++
T Consensus 238 -------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 238 -------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp -------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred -------ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 4454333345666666666666665555555556666666666665555444444433
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-34 Score=296.49 Aligned_cols=257 Identities=34% Similarity=0.550 Sum_probs=202.6
Q ss_pred CCcEEEcccCCCCC--CCChhhhcCCCCCcEEEccC-CcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCE
Q 006657 249 SLYTLDLSYNEFDN--TLVPSWLFGLSHLVFLDLGF-NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEY 325 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~--~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 325 (636)
+++.|++++|.+++ .+| ..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..+.++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 55666666666665 555 5666666666666663 6666666666666777777777777766666666666666666
Q ss_pred EEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCC-CCCEEEccCccCcccc
Q 006657 326 LSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLT-SLHILDLSHNNFSGTL 404 (636)
Q Consensus 326 L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~ 404 (636)
|++++|++++ .+|..+.. +++|++|++++|++++.+|..+..++ +|++|++++|++++.+
T Consensus 130 L~Ls~N~l~~------------------~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 130 LDFSYNALSG------------------TLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp EECCSSEEES------------------CCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred EeCCCCccCC------------------cCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 6666666553 34444443 67777777777777777888888887 8999999999999888
Q ss_pred chhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCC
Q 006657 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 405 p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls 484 (636)
|..+..++ |++|++++|.+++.+|..+..+++|++|+++
T Consensus 191 ~~~~~~l~-----------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 191 PPTFANLN-----------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CGGGGGCC-----------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred ChHHhCCc-----------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 88776442 7889999999999999999999999999999
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
+|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+| .+||.|
T Consensus 230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 9999977776 88899999999999999999999999999999999999999999999888888888899999 799988
Q ss_pred CCCCC
Q 006657 564 LPKNC 568 (636)
Q Consensus 564 ~~~~c 568 (636)
+. .|
T Consensus 309 ~~-~C 312 (313)
T 1ogq_A 309 LP-AC 312 (313)
T ss_dssp SS-CC
T ss_pred CC-CC
Confidence 76 46
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.7e-33 Score=288.75 Aligned_cols=307 Identities=23% Similarity=0.354 Sum_probs=193.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
+..+++|++|++++|.+.. +|. +..+++|++|++++|.+++ +|. +.++++|++|++++|.+... +
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~----------~ 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI----------S 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC----------G
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc----------h
Confidence 4567889999999988873 553 7778899999999988884 444 88888888888888876553 1
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+.++++|++|++++|.+++.+. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+ ++ .+..
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~-~~--~~~~ 175 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKD-VT--PIAN 175 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred HHcCCCcCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCC-ch--hhcc
Confidence 26677777777777777766542 5566666666666665444433 25566666666666666542 22 1455
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|+
T Consensus 176 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~------------------- 232 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK------------------- 232 (347)
T ss_dssp CTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-------------------
T ss_pred CCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc-------------------
Confidence 55566666655555532 22 4555555555555555553322 4445555555555544
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
+++. +. +..+++|++|++++|++++. + .+..
T Consensus 233 ------------------------l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~--------------------- 263 (347)
T 4fmz_A 233 ------------------------ITDL-SP-LANLSQLTWLEIGTNQISDI-N-AVKD--------------------- 263 (347)
T ss_dssp ------------------------CCCC-GG-GTTCTTCCEEECCSSCCCCC-G-GGTT---------------------
T ss_pred ------------------------cCCC-cc-hhcCCCCCEEECCCCccCCC-h-hHhc---------------------
Confidence 4422 22 55566666666666666532 1 1222
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
+++|++|++++|++++. +.+..+++|++|++++|++++..|..++.+++|++|++++|+
T Consensus 264 -------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 264 -------------------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -------------------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 22366677777777643 346677777777777777777777777777777777777777
Q ss_pred CCccCchhccCCCCCCeeeccCCcCc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
+++..| +..+++|++|++++|+++
T Consensus 323 l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccccC--hhhhhccceeehhhhccc
Confidence 776555 667777777777777764
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=285.61 Aligned_cols=304 Identities=24% Similarity=0.333 Sum_probs=202.9
Q ss_pred hcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChh
Q 006657 137 LGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF 216 (636)
Q Consensus 137 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~ 216 (636)
+..+++|++|++++|.+. .+| .+..+++|++|++++|.+...+ .+.++++|++|++++|.++..
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~----------~~~~l~~L~~L~L~~n~i~~~---- 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDIS----------PLSNLVKLTNLYIGTNKITDI---- 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCCC----
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccch----------hhhcCCcCCEEEccCCcccCc----
Confidence 345667777777777665 333 3566666666666666554321 034444555555554444433
Q ss_pred hhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCC
Q 006657 217 LVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296 (636)
Q Consensus 217 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 296 (636)
+ .+.++++|++|++++|.++ .++ . +..+++|++|++++|.....++ .+..+
T Consensus 104 -----------------------~--~~~~l~~L~~L~l~~n~i~-~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l 154 (347)
T 4fmz_A 104 -----------------------S--ALQNLTNLRELYLNEDNIS-DIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNM 154 (347)
T ss_dssp -----------------------G--GGTTCTTCSEEECTTSCCC-CCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTC
T ss_pred -----------------------h--HHcCCCcCCEEECcCCccc-Cch-h-hccCCceeEEECCCCCCccccc-chhhC
Confidence 2 3555555555555555554 222 1 5556666666666664443332 35666
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +. .+++|+.+++++|.+
T Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-------------------~~~~-~~-~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-------------------DISP-LA-SLTSLHYFTAYVNQI 211 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-------------------CCGG-GG-GCTTCCEEECCSSCC
T ss_pred CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-------------------cccc-cc-CCCccceeecccCCC
Confidence 666666666666654333 556666666666666655 2222 22 366677777777777
Q ss_pred cccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccE
Q 006657 377 DGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456 (636)
Q Consensus 377 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 456 (636)
++..+ +..+++|++|++++|++++..+ +..+ ++|++
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l----------------------------------------~~L~~ 247 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLSP--LANL----------------------------------------SQLTW 247 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC----------------------------------------TTCCE
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCcc--hhcC----------------------------------------CCCCE
Confidence 65433 7788999999999999985433 4333 34899
Q ss_pred EECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcC
Q 006657 457 MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 457 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 536 (636)
|++++|.+++. +.+..+++|++|++++|++++. ..+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 99999999853 5689999999999999999964 4589999999999999999999999999999999999999999
Q ss_pred cccCCCCCccCCccccccCCC
Q 006657 537 TGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 537 ~g~ip~~~~~~~~~~~~~~~n 557 (636)
++..| ...+..+....+.+|
T Consensus 324 ~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 324 TDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp CCCGG-GGGCTTCSEESSSCC
T ss_pred ccccC-hhhhhccceeehhhh
Confidence 98766 344555555555555
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.5e-33 Score=290.34 Aligned_cols=279 Identities=19% Similarity=0.192 Sum_probs=237.7
Q ss_pred CCCCCHHHHHHHHHHhhcC-CCCCCCCCCCC-----CCCCcccccEEeCC--------CCCcEEEEEcCCCCCCCCCCcc
Q 006657 28 YIGCIQSERKALLRFKQDL-KDPANRLASWS-----DGNCCTWAGVVCND--------STGRVLELRLGNPFLHDDEPFW 93 (636)
Q Consensus 28 ~~~~~~~~~~~Ll~~k~~~-~~~~~~l~~W~-----~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~l~~~~~~~ 93 (636)
..++..+|+.||++||+++ .|+.+.+.+|. ..++|.|.|+.|+. ...+|+.|+|+++
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--------- 91 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV--------- 91 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS---------
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC---------
Confidence 3456788999999999998 57767778893 56899999999952 3468999999886
Q ss_pred ccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEecc
Q 006657 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 173 (636)
.+. .+|+.++++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|+++
T Consensus 92 ---------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 92 ---------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp ---------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ---------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 554 78999999999999999999999 59999999999999999999999 889999999999999999
Q ss_pred CCCCCCcccccc-cccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcE
Q 006657 174 IDTHNPISFSFL-YLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT 252 (636)
Q Consensus 174 ~n~~~~~~~~~~-~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 252 (636)
+|.+.......+ .......+.++++|++|++++|.++..|. .+..+++|++|++++|.+++ +| ..+..+++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~l~~-l~-~~l~~l~~L~~ 233 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA---SIANLQNLKSLKIRNSPLSA-LG-PAIHHLPKLEE 233 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG---GGGGCTTCCEEEEESSCCCC-CC-GGGGGCTTCCE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH---hhcCCCCCCEEEccCCCCCc-Cc-hhhccCCCCCE
Confidence 976544211111 00111225569999999999999996664 57889999999999999984 66 46899999999
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 253 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|..++++++|++|++++|++.+.+|..++++++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999998887 889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 006657 333 LQ 334 (636)
Q Consensus 333 l~ 334 (636)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 65
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-32 Score=285.39 Aligned_cols=331 Identities=17% Similarity=0.205 Sum_probs=223.6
Q ss_pred ccccCCCCCcceeecCc-cccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEec
Q 006657 94 LEDYDDETSKLIGKINP-SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDL 172 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~-~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 172 (636)
++.++++++.+.. +|+ .+..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..|..++++++|++|++
T Consensus 47 l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEecCCchhh-CChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4556666666554 555 468899999999999999864 5568999999999999999999888888999999999999
Q ss_pred cCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcE
Q 006657 173 SIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT 252 (636)
Q Consensus 173 s~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 252 (636)
++|.+...+... +.++++|++|++++|.+++.+ + ..+.++++|++
T Consensus 125 ~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~--------------------------~-~~~~~l~~L~~ 169 (390)
T 3o6n_A 125 ERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERIE--------------------------D-DTFQATTSLQN 169 (390)
T ss_dssp CSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBCC--------------------------T-TTTSSCTTCCE
T ss_pred CCCccCcCCHHH--------hcCCCCCcEEECCCCccCccC--------------------------h-hhccCCCCCCE
Confidence 999887543221 345556666666655555442 2 33444555555
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 253 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
|++++|.+++ ++ +..+++|++|++++|.+++. ...++|++|++++|.+... |.. ..++|++|++++|+
T Consensus 170 L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 170 LQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNN 237 (390)
T ss_dssp EECCSSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSC
T ss_pred EECCCCcCCc-cc---cccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCC
Confidence 5555555542 11 33445555555555555421 2234566666666665532 221 23456666666555
Q ss_pred cccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhh
Q 006657 333 LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLT 412 (636)
Q Consensus 333 l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 412 (636)
+++ . .++. .+++|+.|++++|.+++..|..+..+++|++|++++|++++ +|..+..
T Consensus 238 l~~-------------------~-~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-- 293 (390)
T 3o6n_A 238 LTD-------------------T-AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP-- 293 (390)
T ss_dssp CCC-------------------C-GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC--
T ss_pred Ccc-------------------c-HHHc-CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC--
Confidence 542 1 1222 26677777777777777777888888999999999998874 3433322
Q ss_pred hhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC
Q 006657 413 AMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI 492 (636)
Q Consensus 413 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i 492 (636)
+++|++|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 294 --------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~- 333 (390)
T 3o6n_A 294 --------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL- 333 (390)
T ss_dssp --------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred --------------------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-
Confidence 344889999999998 6777888999999999999999854
Q ss_pred CccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCC
Q 006657 493 PENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 493 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
| +..+++|+.|++++|++.+.-... -+..+....+..+...|..|
T Consensus 334 ~--~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 334 K--LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp C--CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCSCCCTT
T ss_pred C--chhhccCCEEEcCCCCccchhHHH--HHHHHHhhcccccCceeccc
Confidence 4 678899999999999998643322 23445555556666555443
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.3e-31 Score=296.82 Aligned_cols=310 Identities=18% Similarity=0.204 Sum_probs=216.8
Q ss_pred ccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEecc
Q 006657 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 173 (636)
++.++++++.+.+..+..+..+++|++|+|++|.+++. .|..++.+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 45556666676554444578899999999999999965 66789999999999999999998888889999999999999
Q ss_pred CCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEE
Q 006657 174 IDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL 253 (636)
Q Consensus 174 ~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 253 (636)
+|.+...+... +.++++|++|++++|.+++. .| ..+.++++|+.|
T Consensus 132 ~n~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~--------------------------~~-~~~~~l~~L~~L 176 (597)
T 3oja_B 132 RNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERI--------------------------ED-DTFQATTSLQNL 176 (597)
T ss_dssp SSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBC--------------------------CT-TTTTTCTTCCEE
T ss_pred CCCCCCCCHHH--------hccCCCCCEEEeeCCcCCCC--------------------------Ch-hhhhcCCcCcEE
Confidence 99887643221 34455555555555544443 33 345555555556
Q ss_pred EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccc
Q 006657 254 DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 254 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 333 (636)
++++|.+++ ++ +..+++|+.|++++|.+++ +...++|++|++++|.+....+ .+ .++|+.|++++|.+
T Consensus 177 ~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l 244 (597)
T 3oja_B 177 QLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNL 244 (597)
T ss_dssp ECTTSCCSB-CC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCC
T ss_pred ECcCCCCCC-cC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCC
Confidence 665555542 22 3345556666666665553 2233456666666666653222 11 24566666665555
Q ss_pred ccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhh
Q 006657 334 QGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 334 ~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
++ +.++. .+++|+.|++++|.+++..|..++.+++|+.|+|++|++++ +|..+..
T Consensus 245 ~~--------------------~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--- 299 (597)
T 3oja_B 245 TD--------------------TAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP--- 299 (597)
T ss_dssp CC--------------------CGGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC---
T ss_pred CC--------------------Chhhc-cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc---
Confidence 42 12233 26777777777777777778888888999999999998885 4443322
Q ss_pred hccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCC
Q 006657 414 MMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIP 493 (636)
Q Consensus 414 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip 493 (636)
++.|+.|+|++|.++ .+|..+..+++|++|+|++|.+++. |
T Consensus 300 -------------------------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~ 340 (597)
T 3oja_B 300 -------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K 340 (597)
T ss_dssp -------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred -------------------------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C
Confidence 344888999999998 6788888999999999999999854 3
Q ss_pred ccccCCCCCCEEeCCCCCCCccCc
Q 006657 494 ENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+..+++|+.|++++|.+.+..+
T Consensus 341 --~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp --CCTTCCCSEEECCSSCEEHHHH
T ss_pred --hhhcCCCCEEEeeCCCCCChhH
Confidence 6778899999999999987543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.1e-30 Score=267.38 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=129.3
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCC--cccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI--SSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+|++|++++|.+++..+..+.++++|++|++++|.+. +..+..+.++++|++|++++|.++
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~----------------- 184 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT----------------- 184 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-----------------
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-----------------
Confidence 4444444444444333333444444444444444443 233445555555555555555554
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
.+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++
T Consensus 185 --~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------------------ 241 (330)
T 1xku_A 185 --TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH------------------ 241 (330)
T ss_dssp --SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT------------------
T ss_pred --cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC------------------
Confidence 222221 245666677777776666777888888888888888888666655655443
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccC------CCCCCEE
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA------MRSLESI 505 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~------l~~L~~L 505 (636)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ..+++.|
T Consensus 242 ----------------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 242 ----------------------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp ----------------------CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred ----------------------CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccce
Confidence 788888888888 78888888889999999999988766666643 3678899
Q ss_pred eCCCCCCCc--cCchhccCCCCCCeeeccCCc
Q 006657 506 DFSGNLLSG--RIPQSISSLTFLSHLNLSDNN 535 (636)
Q Consensus 506 ~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 535 (636)
++++|.+.. ..|..+..+..++.+++++|+
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EeecCcccccccCccccccccceeEEEecccC
Confidence 999998863 566788888899999998885
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1e-34 Score=313.98 Aligned_cols=279 Identities=22% Similarity=0.174 Sum_probs=175.0
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCC----CCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTG----MIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
++|++||+++|.++.......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.......
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~------- 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC------- 75 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH-------
Confidence 4678888888888754344447778888888888888774 34666777888888888888664321111
Q ss_pred cccCCC----CCcEEEccCCCCCCCC--ChhhhhCCCCCCCEEEeecCCCCCCCCC----ccccCCCCCcEEEcccCCCC
Q 006657 192 WLSGLS----LLKHLDLTGVDLSTAS--DWFLVTNMLPSLQVLKLSACSLHNSLPE----LPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 192 ~l~~l~----~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~~l~~L~~L~Ls~n~l~ 261 (636)
....++ +|++|++++|.++... .++..+..+++|++|++++|.+++..+. ......++|++|++++|.++
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 012233 6888888888877542 3345677888888888888887642221 01223567888888888887
Q ss_pred CCCC---hhhhcCCCCCcEEEccCCcCcccCCcccc-----CCCCCCEEEccCCcCCcc----cchhhhCCCCCCEEEcc
Q 006657 262 NTLV---PSWLFGLSHLVFLDLGFNSFGGPIPDGLQ-----NLTSLEHLDLRSNNFISS----IPTWLHKFTRLEYLSLR 329 (636)
Q Consensus 262 ~~~~---~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~ 329 (636)
+... +..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 5321 25566778888888888887754444443 356888888888888764 46777788888888888
Q ss_pred Cccccccc-----------CccceEEEccCCCCccc----cchHHHHhhhcCceEecCCCcCcccCccccC-----CCCC
Q 006657 330 ENRLQGMI-----------SSVLVVFDIGENGFSGN----IPAWIGEKLLRNLILRLRSNKFDGQIPAELC-----RLTS 389 (636)
Q Consensus 330 ~n~l~~~~-----------p~~L~~L~l~~n~l~g~----ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~ 389 (636)
+|++++.. ...|+.|++++|.+++. ++..+.. +++|++|++++|.+++..+..+. ..++
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 88876431 12445555555544432 3333332 45555555555555432222221 1135
Q ss_pred CCEEEccCccCcc
Q 006657 390 LHILDLSHNNFSG 402 (636)
Q Consensus 390 L~~L~Ls~N~l~~ 402 (636)
|++|++++|.+++
T Consensus 315 L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 315 LESLWVKSCSFTA 327 (461)
T ss_dssp CCEEECTTSCCBG
T ss_pred ceeeEcCCCCCch
Confidence 5555555555543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1e-30 Score=269.90 Aligned_cols=199 Identities=21% Similarity=0.240 Sum_probs=132.5
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCC--cccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI--SSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
++|++|++++|++++..+..+.++++|++|++++|.++ +..|..+..+ +|++|++++|+++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~---------------- 185 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT---------------- 185 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS----------------
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC----------------
Confidence 34444444444444333333444555555555555543 2334444444 5555555555554
Q ss_pred CccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccc
Q 006657 351 FSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430 (636)
Q Consensus 351 l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~ 430 (636)
.+|..+ .++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++
T Consensus 186 ---~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------- 242 (332)
T 2ft3_A 186 ---GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT----------------- 242 (332)
T ss_dssp ---SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-----------------
T ss_pred ---ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-----------------
Confidence 222222 246667777777777666677888888888888888888766666655444
Q ss_pred eeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccC------CCCCCE
Q 006657 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA------MRSLES 504 (636)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~------l~~L~~ 504 (636)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ..+|+.
T Consensus 243 -----------------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 243 -----------------------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp -----------------------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred -----------------------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 788889999888 78888888999999999999998766666654 367899
Q ss_pred EeCCCCCCC--ccCchhccCCCCCCeeeccCCc
Q 006657 505 IDFSGNLLS--GRIPQSISSLTFLSHLNLSDNN 535 (636)
Q Consensus 505 L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 535 (636)
|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999987 6778888899999999999885
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.4e-30 Score=265.21 Aligned_cols=243 Identities=22% Similarity=0.292 Sum_probs=152.4
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGL 196 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l 196 (636)
++++++++++.++ .+|..+ .++|++|++++|.+.+..|..+.++++|++|++++|.+..... ..+.++
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--------KAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------GGSTTC
T ss_pred cCCEEECCCCCcc--ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------hHhhCc
Confidence 6899999999988 577766 3789999999999987777889999999999999988765421 226777
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCC-CCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN-TLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L 275 (636)
++|++|++++|.++..+. .+ .++|++|++++|.+++ ++...+.++++|+.|++++|.++. .+.+..+..+ +|
T Consensus 102 ~~L~~L~L~~n~l~~l~~---~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPP---NL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCCEEECCSSCCCSCCS---SC--CTTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred CCCCEEECCCCcCCccCc---cc--cccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 888888888887776543 11 1667777777777763 343456667777777777776642 1222555555 66
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++. .
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------------------~ 233 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI------------------E 233 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC------------------C
T ss_pred CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC------------------C
Confidence 666666666663 444433 5666666666666655555566666666666555555421 1
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCc
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS 401 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 401 (636)
+..+. .+++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 234 ~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 234 NGSLS-FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp TTGGG-GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred hhHhh-CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 11222 2444555555555444 34444444444555555444444
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.9e-29 Score=258.86 Aligned_cols=245 Identities=22% Similarity=0.272 Sum_probs=155.0
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGL 196 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l 196 (636)
++++++++++.++ .+|..+. ++|++|++++|++++..+..++++++|++|++++|.+...... .+.++
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG--------AFAPL 99 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--------TTTTC
T ss_pred CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH--------HhcCC
Confidence 5778888888877 4666543 6788888888888876666788888888888888877654211 25667
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCC-CCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN-TLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L 275 (636)
++|++|++++|.++..+. .+ .++|++|++++|.+++..+ ..+.++++|+.|++++|.+.. .+.+..+.++++|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~---~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPE---KM--PKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCCEEECCSSCCSBCCS---SC--CTTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCEEECCCCcCCccCh---hh--cccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 777777777777665543 11 2567777777777764333 456677777777777777642 1233566667777
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
++|++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus 174 ~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------------ 232 (330)
T 1xku_A 174 SYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------------------ 232 (330)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------------------
T ss_pred CEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------------------
Confidence 77777777766 3444433 66777777777776666666666666666666666655221
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 402 (636)
+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 233 ~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 233 NGSLA-NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTTGG-GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred hhhcc-CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 11222 2455555566555555 455555555555555555555553
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.3e-33 Score=302.18 Aligned_cols=359 Identities=18% Similarity=0.121 Sum_probs=269.7
Q ss_pred CCCCCEEEccCCccCCCCCcc-CcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCC--CChh
Q 006657 140 MGSLRHIDLSRAELTGMIPHQ-LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA--SDWF 216 (636)
Q Consensus 140 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~ 216 (636)
.++|++|++++|+++...... +..+++|++|++++|.+.......+ ...+..+++|++|++++|.+++. ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l----~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI----SSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHH----HHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHH----HHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 367899999999987554333 6788999999999998754311111 12367889999999999988754 2222
Q ss_pred hhhCCCC-CCCEEEeecCCCCC----CCCCccccCCCCCcEEEcccCCCCCCCChhhh-----cCCCCCcEEEccCCcCc
Q 006657 217 LVTNMLP-SLQVLKLSACSLHN----SLPELPIANFSSLYTLDLSYNEFDNTLVPSWL-----FGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 217 ~~~~~l~-~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-----~~l~~L~~L~L~~n~l~ 286 (636)
..+.... +|++|++++|.++. .++ ..+..+++|++|++++|.+++..+ ..+ ...++|++|++++|+++
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCC
Confidence 2222222 79999999999874 345 568889999999999999864322 222 23568999999999998
Q ss_pred cc----CCccccCCCCCCEEEccCCcCCcccchhhh-----CCCCCCEEEccCcccccc----cC------ccceEEEcc
Q 006657 287 GP----IPDGLQNLTSLEHLDLRSNNFISSIPTWLH-----KFTRLEYLSLRENRLQGM----IS------SVLVVFDIG 347 (636)
Q Consensus 287 ~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p------~~L~~L~l~ 347 (636)
+. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++ ..|+.|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 64 355667789999999999998765555444 367999999999998864 22 478999999
Q ss_pred CCCCccccchHHHH----hhhcCceEecCCCcCccc----CccccCCCCCCCEEEccCccCccccchhhhhhhhhccccC
Q 006657 348 ENGFSGNIPAWIGE----KLLRNLILRLRSNKFDGQ----IPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419 (636)
Q Consensus 348 ~n~l~g~ip~~~~~----~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~ 419 (636)
+|.+.+.....+.. .+++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+...-.
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~------ 309 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL------ 309 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT------
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc------
Confidence 99887643332222 367899999999988864 6777777889999999999887655554443210
Q ss_pred CCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCCCCcc
Q 006657 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGKIPEN 495 (636)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 495 (636)
...+.|++|++++|.+++. ++..+..+++|++|++++|++++..+..
T Consensus 310 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 310 -----------------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp -----------------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred -----------------------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 0123589999999999876 5667788899999999999998765554
Q ss_pred ccC-----CCCCCEEeCCCCCCCc----cCchhccCCCCCCeeeccCCcCccc
Q 006657 496 VGA-----MRSLESIDFSGNLLSG----RIPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 496 ~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 543 6799999999999996 7888899999999999999998753
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=261.16 Aligned_cols=270 Identities=21% Similarity=0.242 Sum_probs=180.6
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
.+|..+. ++|++|++++|.+++. .+..+.++++|++|++++|++++..|..++++++|++|++++|.+...+..
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 118 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS--- 118 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH---
T ss_pred ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh---
Confidence 4566554 5899999999999853 444789999999999999999988888899999999999999987654321
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
.+.++++|++|++++|.++..+. ...+..+++|++|++++|...+.++...+.++++|++|++++|.+++..+
T Consensus 119 -----~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 191 (353)
T 2z80_A 119 -----WFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP- 191 (353)
T ss_dssp -----HHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-
T ss_pred -----HhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-
Confidence 25667777777777777776542 01345666777777776642223332456666666666666666654333
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhh---CCCCCCEEEccCcccccccCccceE
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH---KFTRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
..+..+++|++|++++|+++...+..+..+++|++|++++|.+++..+..+. ..+.++.++++++.+++
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~-------- 263 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-------- 263 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH--------
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC--------
Confidence 5666666666666666666432222233456666666666666554333222 23344444444443331
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccc-cCCCCCCCEEEccCccCccccc
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTLP 405 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 405 (636)
+.+. .+|.++.. +++|+.|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 264 -----~~l~-~l~~~l~~-l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 -----ESLF-QVMKLLNQ-ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----HHHH-HHHHHHHT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -----cchh-hhHHHHhc-ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1111 46777765 899999999999999 56665 5899999999999999998766
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.2e-29 Score=253.55 Aligned_cols=259 Identities=25% Similarity=0.321 Sum_probs=158.9
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCC--CChhhhcCCCCCcE
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT--LVPSWLFGLSHLVF 277 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~ 277 (636)
+.++.+++.++..|. ...++|++|++++|+++ .+|...+.++++|++|++++|.++.. .+ ..+..+++|++
T Consensus 10 ~~l~c~~~~l~~ip~-----~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-----GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCS-QSDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCSSCCS-----CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEE-HHHHSCSCCCE
T ss_pred CEEEcCCCCcccCCC-----CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcc-cccccccccCE
Confidence 355565555555543 11234555555555554 33323344555555555555544311 12 33334444444
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccc
Q 006657 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip 356 (636)
|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------- 124 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------------------------- 124 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTT-------------------------------------
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhh-------------------------------------
Confidence 444444444 233334444444444444444443222 23333
Q ss_pred hHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc-ccchhhhhhhhhccccCCCccccccccceeece
Q 006657 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCINNLTAMMNQENSMETDKEYDTFTIELS 435 (636)
Q Consensus 357 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 435 (636)
+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..+++
T Consensus 125 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~---------------------- 176 (306)
T 2z66_A 125 ------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------------------- 176 (306)
T ss_dssp ------CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT----------------------
T ss_pred ------ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC----------------------
Confidence 4555556666666655666667777888888888888775 45555544433
Q ss_pred EEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCcc
Q 006657 436 ILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515 (636)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~ 515 (636)
|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 177 ------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 177 ------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp ------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred ------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 77888888888877788888888888888888888877776788888888888888888888
Q ss_pred CchhccCC-CCCCeeeccCCcCcccCCCCCccCCc
Q 006657 516 IPQSISSL-TFLSHLNLSDNNLTGKIPLGTQLQGF 549 (636)
Q Consensus 516 ~p~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~~~ 549 (636)
.|..+..+ ++|++|++++|+++|.++..+..+++
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred CHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 88888887 48888888888888877654444443
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.9e-28 Score=249.05 Aligned_cols=233 Identities=22% Similarity=0.300 Sum_probs=165.7
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+++.|++++|.++ .+| ..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3444444444443 333 33444555555555555555 45555555555555555555555 44555555555555555
Q ss_pred cCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhh
Q 006657 329 RENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408 (636)
Q Consensus 329 ~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 408 (636)
++|++.+.+|..+...++.+ .+ . .+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~-----~~----~-~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASG-----EH----Q-GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CC-----CE----E-ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred CCCCCccccChhHhhccchh-----hh----c-cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 55555555554443322221 11 1 3778888888888888 788888899999999999999984 55556
Q ss_pred hhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccC
Q 006657 409 NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFL 488 (636)
Q Consensus 409 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 488 (636)
..+++ |++|++++|++.+.+|..++.+++|++|++++|++
T Consensus 226 ~~l~~----------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 226 HHLPK----------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp GGCTT----------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred ccCCC----------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 55544 88899999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCc
Q 006657 489 AGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 489 ~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
.+.+|..++.+++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999877654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=256.64 Aligned_cols=273 Identities=18% Similarity=0.225 Sum_probs=175.4
Q ss_pred EEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEc
Q 006657 201 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280 (636)
Q Consensus 201 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 280 (636)
..+++++.++..|. .+ .++|++|++++|++++ ++...+.++++|++|++++|.+++ +++..+.++++|++|++
T Consensus 35 ~c~~~~~~l~~iP~---~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 35 ICKGSSGSLNSIPS---GL--TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EEECCSTTCSSCCT---TC--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred EeeCCCCCcccccc---cc--cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEEC
Confidence 34444555544432 11 2355666666665553 332355666666666666666653 33355666666666666
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcc-cccccCccceEEEccCCCCccccc-h
Q 006657 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENR-LQGMISSVLVVFDIGENGFSGNIP-A 357 (636)
Q Consensus 281 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~L~~L~l~~n~l~g~ip-~ 357 (636)
++|++++..+..++++++|++|++++|++++..+ ..+..+++|++|++++|. +. .++ .
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------------~~~~~ 168 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-------------------KIQRK 168 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------------EECTT
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-------------------ccCHH
Confidence 6666664333335666666666666666653322 245566666666666653 33 221 2
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchh-hhhhhhhccccCCCccccccccceeeceE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC-INNLTAMMNQENSMETDKEYDTFTIELSI 436 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 436 (636)
.+. .+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 169 ~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~------------------------- 221 (353)
T 2z80_A 169 DFA-GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT------------------------- 221 (353)
T ss_dssp TTT-TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHT-------------------------
T ss_pred Hcc-CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhc-------------------------
Confidence 222 3667777777777777777778888888888888888875 44432 2222
Q ss_pred EEEeeccccccccccccccEEECcCCccCccCCcccc---cccCCCeEeCCCccCcC----CCCccccCCCCCCEEeCCC
Q 006657 437 LVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT---NLLALQSLNLSHNFLAG----KIPENVGAMRSLESIDFSG 509 (636)
Q Consensus 437 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~L~Ls~ 509 (636)
++|+.|++++|.+++..+..+. ..+.++.++++++.+++ .+|..+..+++|++|++++
T Consensus 222 ---------------~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 222 ---------------SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp ---------------TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred ---------------ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 3378888888888876555443 45678888888888876 4778889999999999999
Q ss_pred CCCCccCchh-ccCCCCCCeeeccCCcCcccCCC
Q 006657 510 NLLSGRIPQS-ISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 510 N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 287 N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9999 55655 58999999999999999998874
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.7e-28 Score=259.34 Aligned_cols=260 Identities=21% Similarity=0.193 Sum_probs=174.9
Q ss_pred CCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE
Q 006657 198 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 277 (636)
..+.++.++..++..|. .+ .++++.|+|++|++++..+ ..+.++++|++|+|++|.++ .+++..|.++++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~---~~--~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD---GI--STNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCSSCCS---CC--CTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCE
T ss_pred CCCEEEeCCCCcCcCCC---CC--CCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCE
Confidence 34566666666665543 11 2456666666666554333 45555566666666666555 333355555555555
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccch
Q 006657 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~ 357 (636)
|+|++|++++..+..+..+++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~------------------------- 171 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK------------------------- 171 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-------------------------
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-------------------------
Confidence 5555555554444445555555555555555554444445555555555554432
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
.+....+..|..+++|++|++++|+++ .+|. +.
T Consensus 172 -----------------~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~---------------------------- 204 (440)
T 3zyj_A 172 -----------------RLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT---------------------------- 204 (440)
T ss_dssp -----------------TCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT----------------------------
T ss_pred -----------------CcceeCcchhhcccccCeecCCCCcCc-cccc-cC----------------------------
Confidence 122122335677888888888888887 4442 22
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
.+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 205 ------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 205 ------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp ------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred ------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 23448899999999998889999999999999999999998889999999999999999999998888
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCCCccCC
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQLQG 548 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 548 (636)
..+..+++|++|++++|++.|.+...+...+
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred hHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 8889999999999999999998876544333
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.5e-28 Score=247.95 Aligned_cols=278 Identities=21% Similarity=0.208 Sum_probs=219.1
Q ss_pred CCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC--CCCccc
Q 006657 167 LQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS--LPELPI 244 (636)
Q Consensus 167 L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~ 244 (636)
-+.++++++.++..|.. -.++|++|++++|.++..+. ..+..+++|++|++++|.++.. .+ ..+
T Consensus 9 ~~~l~c~~~~l~~ip~~-----------~~~~l~~L~L~~n~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~ 74 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTG-----------IPSSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFKGCCS-QSD 74 (306)
T ss_dssp TTEEECCSSCCSSCCSC-----------CCTTCCEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCEEEEEE-HHH
T ss_pred CCEEEcCCCCcccCCCC-----------CCCCCCEEECCCCccCccCH--hHhhccccCCEEECCCCccCcccCcc-ccc
Confidence 36789998887776532 23689999999999998764 1467899999999999999732 24 456
Q ss_pred cCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCcccchhhhCCCCC
Q 006657 245 ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP-DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRL 323 (636)
Q Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 323 (636)
..+++|++|++++|.+. .++ ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 75 ~~~~~L~~L~Ls~n~i~-~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HSCSCCCEEECCSCSEE-EEE-EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccccccCEEECCCCccc-cCh-hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 67899999999999997 566 668899999999999999986654 578999999999999999998888888888889
Q ss_pred CEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccc
Q 006657 324 EYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403 (636)
Q Consensus 324 ~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 403 (636)
++|++++|.+++. .+|..+..+++|++|++++|++++.
T Consensus 153 ~~L~l~~n~l~~~------------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 153 EVLKMAGNSFQEN------------------------------------------FLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp CEEECTTCEEGGG------------------------------------------EECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CEEECCCCccccc------------------------------------------cchhHHhhCcCCCEEECCCCCcCCc
Confidence 8888888876521 2345566677788888888877766
Q ss_pred cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeC
Q 006657 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL 483 (636)
Q Consensus 404 ~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 483 (636)
.|..+.++++ |++|++++|++++..+..+..+++|++|++
T Consensus 191 ~~~~~~~l~~----------------------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 191 SPTAFNSLSS----------------------------------------LQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CTTTTTTCTT----------------------------------------CCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CHHHhcCCCC----------------------------------------CCEEECCCCccCccChhhccCcccCCEeEC
Confidence 6666654443 777888888888766767888899999999
Q ss_pred CCccCcCCCCccccCCC-CCCEEeCCCCCCCccCc--hhccCCCCCCeeeccCCcCcccCCC
Q 006657 484 SHNFLAGKIPENVGAMR-SLESIDFSGNLLSGRIP--QSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 484 s~N~l~~~ip~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
++|++++..|..+..++ +|++|++++|.+++..+ .....+...+.+.+..+.+.|..|.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 99999988888888884 89999999999986532 2233345566677778888887775
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.2e-28 Score=259.99 Aligned_cols=255 Identities=20% Similarity=0.174 Sum_probs=165.9
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
.+.++.++..++..|. .+ .+++++|+|++|++++..+ ..+.++++|++|+|++|.+++ +++..|.++++|++|
T Consensus 56 ~~~v~c~~~~l~~iP~---~~--~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ---GI--PSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSSCCS---CC--CTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCccCC---CC--CCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEE
Confidence 4556666665555543 11 2455555555555554333 345555555555555555542 222445555555555
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchH
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAW 358 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~ 358 (636)
+|++|++++..+..+..+++|++|++++|+++...+..|.++++|++|+
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~------------------------------- 177 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD------------------------------- 177 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE-------------------------------
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe-------------------------------
Confidence 5555555544334445555555555555555443334444444444444
Q ss_pred HHHhhhcCceEecCCCcCcccC-ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 359 IGEKLLRNLILRLRSNKFDGQI-PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 359 ~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
+++|+..+.+ +..+..+++|++|++++|++++ +|. +..
T Consensus 178 ------------l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~--------------------------- 216 (452)
T 3zyi_A 178 ------------LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTP--------------------------- 216 (452)
T ss_dssp ------------CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTT---------------------------
T ss_pred ------------CCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-ccc---------------------------
Confidence 4443222223 2356778888888888888873 332 222
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 217 -------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 217 -------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp -------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 3348889999999998888899999999999999999998888899999999999999999998777
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCCCc
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQ 545 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 545 (636)
..+..+++|++|++++|++.|.+...+.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred HHhccccCCCEEEccCCCcCCCCCchHH
Confidence 8888999999999999999998876543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.4e-27 Score=240.99 Aligned_cols=244 Identities=20% Similarity=0.163 Sum_probs=152.1
Q ss_pred CEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEcc
Q 006657 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR 305 (636)
Q Consensus 226 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 305 (636)
++++.+++.++ .+|. .-.++|++|++++|.++ .+++..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~---~~~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCT---TCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCc---CCCCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 34555555544 3331 11234555555555554 2332444455555555555555544444444455555555555
Q ss_pred CCc-CCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcccc
Q 006657 306 SNN-FISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384 (636)
Q Consensus 306 ~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l 384 (636)
+|. +....|..+..+ ++|++|++++|.+++..|..+
T Consensus 89 ~n~~l~~~~~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~~~ 125 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGL-------------------------------------------GRLHTLHLDRCGLQELGPGLF 125 (285)
T ss_dssp SCTTCCCCCTTTTTTC-------------------------------------------TTCCEEECTTSCCCCCCTTTT
T ss_pred CCCCccccCHHHhcCC-------------------------------------------cCCCEEECCCCcCCEECHhHh
Confidence 554 333334444444 455555555555555555666
Q ss_pred CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCcc
Q 006657 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 464 (636)
..+++|++|++++|++++..+..+.++++ |++|++++|++
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------------------------L~~L~l~~n~l 165 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGN----------------------------------------LTHLFLHGNRI 165 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------------------------------CCEEECCSSCC
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCC----------------------------------------ccEEECCCCcc
Confidence 77777888888888777555444544433 67788888888
Q ss_pred CccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCC
Q 006657 465 SGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544 (636)
Q Consensus 465 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 544 (636)
++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++.|.++..+
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~ 245 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence 76666668888888888888888888778888888888888888888887777778888888888888888888877655
Q ss_pred ccCCccccccCCC
Q 006657 545 QLQGFNASCFAGN 557 (636)
Q Consensus 545 ~~~~~~~~~~~~n 557 (636)
..+++.......+
T Consensus 246 ~~~~l~~~~~~~~ 258 (285)
T 1ozn_A 246 LWAWLQKFRGSSS 258 (285)
T ss_dssp HHHHHHHCCSEEC
T ss_pred HHHHHHhcccccC
Confidence 5555544333333
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.9e-26 Score=255.22 Aligned_cols=289 Identities=23% Similarity=0.263 Sum_probs=234.6
Q ss_pred CCCC-CCCCcccccEEeC------CCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCC
Q 006657 54 ASWS-DGNCCTWAGVVCN------DSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNN 126 (636)
Q Consensus 54 ~~W~-~~~~c~w~gv~C~------~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n 126 (636)
+.|. ..+||.|+|..|. -....++.|+++++ .+. .+|..+. ++|++|++++|
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n------------------~L~-~lp~~l~--~~L~~L~L~~N 71 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES------------------GLT-TLPDCLP--AHITTLVIPDN 71 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS------------------CCS-CCCSCCC--TTCSEEEECSC
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCC------------------CcC-ccChhhC--CCCcEEEecCC
Confidence 4565 6788999764221 01134788999886 444 6777665 89999999999
Q ss_pred CCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccC
Q 006657 127 NFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG 206 (636)
Q Consensus 127 ~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 206 (636)
.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+...+. .+++|++|++++
T Consensus 72 ~l~--~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~------------~l~~L~~L~L~~ 130 (622)
T 3g06_A 72 NLT--SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA------------LPSGLCKLWIFG 130 (622)
T ss_dssp CCS--CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC------------CCTTCCEEECCS
T ss_pred CCC--CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC------------CCCCcCEEECCC
Confidence 998 4776 5799999999999998 5666 77999999999998876431 468899999999
Q ss_pred CCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc
Q 006657 207 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 207 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
|.++..+. .+++|++|++++|.+++ +|. .+++|+.|++++|.++ .++ ..+++|++|++++|.++
T Consensus 131 N~l~~lp~------~l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 131 NQLTSLPV------LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp SCCSCCCC------CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS
T ss_pred CCCCcCCC------CCCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCC
Confidence 99998765 25899999999999984 552 3578999999999998 455 45789999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc--cCccceEEEccCCCCccccchHHHHhhh
Q 006657 287 GPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM--ISSVLVVFDIGENGFSGNIPAWIGEKLL 364 (636)
Q Consensus 287 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~L~~L~l~~n~l~g~ip~~~~~~~~ 364 (636)
+ +|.. .++|+.|++++|.++ .+|. .+++|++|++++|++++. .+.+|+.|++++|.++ .+|. .++
T Consensus 195 ~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~-~lp~----~~~ 261 (622)
T 3g06_A 195 S-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPM----LPS 261 (622)
T ss_dssp C-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCT
T ss_pred C-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC-cCCc----ccc
Confidence 5 5543 478999999999998 4553 347899999999999873 3458999999999998 6777 378
Q ss_pred cCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhh
Q 006657 365 RNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414 (636)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 414 (636)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..++..
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 9999999999999 789999999999999999999999999988887753
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=9.5e-30 Score=283.95 Aligned_cols=376 Identities=14% Similarity=0.053 Sum_probs=270.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcC-CCC-CCEEEccCCc-cCC-CCCccCcCCCCCCeEeccCCCCCCcccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGF-MGS-LRHIDLSRAE-LTG-MIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLEN 189 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~-l~~-L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 189 (636)
.+++|++|+|++|.+++. .+..+.. +++ |++|++++|. ++. .++....++++|++|++++|.+.......+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~--- 185 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH--- 185 (592)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH---
T ss_pred hCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH---
Confidence 789999999999988764 4555554 344 9999999986 221 1223334789999999999976443211000
Q ss_pred cccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC---CCC
Q 006657 190 FSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD---NTL 264 (636)
Q Consensus 190 l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~---~~~ 264 (636)
....++++|++|++++|.+++. ..+...+..+++|++|++++|.+.+ ++ ..+.++++|+.|+++..... +..
T Consensus 186 -~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 186 -ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp -HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred -HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHH
Confidence 1245789999999999998854 2334455678999999999998875 56 56888999999999864322 122
Q ss_pred ChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccccc-c-----
Q 006657 265 VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGM-I----- 337 (636)
Q Consensus 265 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~-~----- 337 (636)
. ..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+. +
T Consensus 263 ~-~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 263 Y-MNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ 339 (592)
T ss_dssp S-SCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH
T ss_pred H-HHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH
Confidence 2 4567788999999988643 4678888889999999999999765444 446889999999998 444322 1
Q ss_pred -CccceEEEcc-----------CCCCccccchHHHHhhhcCceEecCCCcCcccCccccCC-CCCCCEEEcc----CccC
Q 006657 338 -SSVLVVFDIG-----------ENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCR-LTSLHILDLS----HNNF 400 (636)
Q Consensus 338 -p~~L~~L~l~-----------~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l 400 (636)
-..|+.|+++ .|.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|++
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 1368888888 356665444444445788888888888888776666655 7888888886 5666
Q ss_pred ccc-----cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCc--cCccCCcccc
Q 006657 401 SGT-----LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN--LSGDIPEEMT 473 (636)
Q Consensus 401 ~~~-----~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~--l~g~~p~~~~ 473 (636)
++. ++..+. .+++|+.|+++.|. +++..+..+.
T Consensus 420 ~~~p~~~~~~~~~~----------------------------------------~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 420 TDLPLDNGVRSLLI----------------------------------------GCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp SSCCCHHHHHHHHH----------------------------------------HCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred cCchHHHHHHHHHH----------------------------------------hCCCCCEEEEecCCCCccHHHHHHHH
Confidence 643 222222 34558899997543 6766665554
Q ss_pred -cccCCCeEeCCCccCcC-CCCccccCCCCCCEEeCCCCCCCcc-CchhccCCCCCCeeeccCCcCccc
Q 006657 474 -NLLALQSLNLSHNFLAG-KIPENVGAMRSLESIDFSGNLLSGR-IPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 474 -~l~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
.+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|+++..
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 48899999999999886 3455567889999999999998755 444556789999999999998754
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.1e-27 Score=234.92 Aligned_cols=254 Identities=20% Similarity=0.222 Sum_probs=194.1
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
-++++.+++.++..|. ...++|++|++++|.+++..+ ..+.++++|++|++++|.+++ +.+..+.++++|++|
T Consensus 13 ~~~~~c~~~~l~~ip~-----~~~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV-----GIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQL 85 (285)
T ss_dssp SCEEECCSSCCSSCCT-----TCCTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEE
T ss_pred CeEEEcCcCCcccCCc-----CCCCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccce-eCHhhcCCccCCCEE
Confidence 3789999999988864 235799999999999986544 679999999999999999984 444889999999999
Q ss_pred EccCCc-CcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccch
Q 006657 279 DLGFNS-FGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357 (636)
Q Consensus 279 ~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~ 357 (636)
++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------~~- 145 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------------------LP- 145 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------CC-
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------------------cC-
Confidence 999997 876668889999999999999999998888888888888888888887662 22
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
+..+..+++|++|++++|++++..+..+..+++
T Consensus 146 -----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------------------ 178 (285)
T 1ozn_A 146 -----------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------------------------ 178 (285)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT------------------------
T ss_pred -----------------------HhHhccCCCccEEECCCCcccccCHHHhcCccc------------------------
Confidence 233555666777777777766444444444333
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
|++|++++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++|.+....+
T Consensus 179 ----------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 179 ----------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ----------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ----------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 6677777777777777778888888888888888887666667888888888888888875443
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCC
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
.. .-...++.+..+.+.+.|..|..
T Consensus 243 ~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 243 AR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp GH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cH-HHHHHHHhcccccCccccCCchH
Confidence 21 11133555667788888888753
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.7e-26 Score=242.74 Aligned_cols=228 Identities=24% Similarity=0.230 Sum_probs=173.5
Q ss_pred ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEe
Q 006657 92 FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLD 171 (636)
Q Consensus 92 ~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 171 (636)
..++.+++++|.+.+..+.++.++++|++|+|++|.++.. .+..|.++++|++|++++|++++..+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4455666666788777778888888888888888888754 556788888888888888888866666788888888888
Q ss_pred ccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCC
Q 006657 172 LSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL 250 (636)
Q Consensus 172 Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 250 (636)
+++|.+...+.. .+.++++|++|++++|+ +...+. ..+..+++|++|++++|+++ .+| .+..+++|
T Consensus 143 L~~N~i~~~~~~--------~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L 209 (440)
T 3zyj_A 143 LRNNPIESIPSY--------AFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKL 209 (440)
T ss_dssp CCSCCCCEECTT--------TTTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTSCCS-SCC--CCTTCSSC
T ss_pred CCCCcccccCHH--------HhhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecCCCCcCc-ccc--ccCCCccc
Confidence 888877654322 26778888888888743 333322 24667888888888888887 555 47788888
Q ss_pred cEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccC
Q 006657 251 YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 251 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 330 (636)
+.|++++|.+++ +++..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|++|++++
T Consensus 210 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 210 DELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 888888888874 4447788888888888888888877777788888888888888888877777777888888888888
Q ss_pred cccc
Q 006657 331 NRLQ 334 (636)
Q Consensus 331 n~l~ 334 (636)
|++.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8765
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.1e-26 Score=243.87 Aligned_cols=207 Identities=20% Similarity=0.162 Sum_probs=152.7
Q ss_pred CCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCcccc
Q 006657 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIA 245 (636)
Q Consensus 166 ~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 245 (636)
..+.++.+++.+..+|.. + .+++++|+|++|.+++.+. ..+..+++|++|+|++|.+++..+ ..+.
T Consensus 55 ~~~~v~c~~~~l~~iP~~---------~--~~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~ 120 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG---------I--PSNTRYLNLMENNIQMIQA--DTFRHLHHLEVLQLGRNSIRQIEV-GAFN 120 (452)
T ss_dssp SSCEEECCSSCCSSCCSC---------C--CTTCSEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECT-TTTT
T ss_pred CCcEEEECCCCcCccCCC---------C--CCCccEEECcCCcCceECH--HHcCCCCCCCEEECCCCccCCcCh-hhcc
Confidence 467889988887765532 1 2689999999999988732 267889999999999999996655 7899
Q ss_pred CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc-chhhhCCCCCC
Q 006657 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLE 324 (636)
Q Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~ 324 (636)
++++|++|+|++|.++ .+++..|.++++|++|++++|++++..+..+.++++|++|++++|...+.+ +..|.++++|+
T Consensus 121 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 9999999999999998 666688999999999999999999777778999999999999995444444 45688888999
Q ss_pred EEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcccc
Q 006657 325 YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTL 404 (636)
Q Consensus 325 ~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 404 (636)
+|++++|++++ +|. +. .+++|+.|++++|.+++..|..|..+++|+.|++++|++++..
T Consensus 200 ~L~L~~n~l~~-------------------~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 200 YLNLGMCNIKD-------------------MPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp EEECTTSCCSS-------------------CCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred EEECCCCcccc-------------------ccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 99988888762 221 11 1445555555555555444555555555555555555544433
Q ss_pred chhh
Q 006657 405 PRCI 408 (636)
Q Consensus 405 p~~l 408 (636)
|..+
T Consensus 259 ~~~~ 262 (452)
T 3zyi_A 259 RNAF 262 (452)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 3333
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.3e-25 Score=248.73 Aligned_cols=269 Identities=23% Similarity=0.279 Sum_probs=148.6
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccC
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSG 195 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 195 (636)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++..++. .
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~------------~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV------------L 99 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC------------C
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC------------C
Confidence 35888888888888 4777664 78888888888887 5555 46777778877776654321 3
Q ss_pred CCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 196 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 196 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
+++|++|++++|.+++.+. .+++|+.|++++|++++ +|. .+++|
T Consensus 100 l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~-lp~-----------------------------~l~~L 143 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTS-LPV-----------------------------LPPGL 143 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC------CCTTCCEEECCSSCCSC-CCC-----------------------------CCTTC
T ss_pred CCCCCEEECcCCcCCCCCC------CCCCcCEEECCCCCCCc-CCC-----------------------------CCCCC
Confidence 4555666666555555432 23445555555554442 331 12444
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
++|++++|++++ +|. ..++|+.|++++|.+++ +| ..+++|++|++++|++++ +
T Consensus 144 ~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-------------------l 196 (622)
T 3g06_A 144 QELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-------------------L 196 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-------------------C
T ss_pred CEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-------------------C
Confidence 444444444442 222 12344455555554442 22 223444444444444431 1
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeece
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELS 435 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 435 (636)
|.. .++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|..
T Consensus 197 ~~~----~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~~---------------------------- 239 (622)
T 3g06_A 197 PTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---------------------------- 239 (622)
T ss_dssp CCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred CCc----cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCCC----------------------------
Confidence 111 233444444444444 22321 2456666666666663 3311
Q ss_pred EEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCcc
Q 006657 436 ILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515 (636)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~ 515 (636)
+++|+.|++++|+++ .+|. .+++|++|+|++|+++ .+|..+.++++|+.|+|++|.+++.
T Consensus 240 ---------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 240 ---------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp ---------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred ---------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 122566677777666 4454 4566777777777776 5666677777777777777777766
Q ss_pred CchhccCCC
Q 006657 516 IPQSISSLT 524 (636)
Q Consensus 516 ~p~~l~~l~ 524 (636)
+|..+..++
T Consensus 300 ~~~~l~~L~ 308 (622)
T 3g06_A 300 TLQALREIT 308 (622)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHhcc
Confidence 666555443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.6e-28 Score=249.51 Aligned_cols=134 Identities=24% Similarity=0.277 Sum_probs=98.0
Q ss_pred hhcCceEecCCCcCccc--Ccccc--CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEE
Q 006657 363 LLRNLILRLRSNKFDGQ--IPAEL--CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV 438 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 438 (636)
+++|++|++++|++.+. +|..+ ..+++|++|++++|++++ ++.....+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~--------------------------- 223 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSAL--------------------------- 223 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHH---------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHH---------------------------
Confidence 44444455555544433 22333 678889999999998873 22111110
Q ss_pred EeeccccccccccccccEEECcCCccCccCC-cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 439 VMKGRELAYNTMLKLVRCMDLSGNNLSGDIP-EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 439 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
...+++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++++. |
T Consensus 224 ---------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p 290 (312)
T 1wwl_A 224 ---------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-P 290 (312)
T ss_dssp ---------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-C
T ss_pred ---------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-h
Confidence 1123448899999999998775 55677899999999999998 7888777 8999999999999976 6
Q ss_pred hhccCCCCCCeeeccCCcCcc
Q 006657 518 QSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g 538 (636)
. +..+++|++|++++|++++
T Consensus 291 ~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-TTTSCEEEEEECTTCTTTC
T ss_pred h-HhhCCCCCEEeccCCCCCC
Confidence 6 8899999999999999986
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.1e-29 Score=281.25 Aligned_cols=400 Identities=14% Similarity=0.079 Sum_probs=284.3
Q ss_pred ecCccccCCCCCCEEeCCCCCCC---CCCCchh------------hcCCCCCCEEEccCCccCCCCCccCcCC-C-CCCe
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFE---NNQIPVF------------LGFMGSLRHIDLSRAELTGMIPHQLGNL-F-NLQY 169 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~---~~~ip~~------------l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~-~L~~ 169 (636)
.++..+..+++|++|+++++... + .+|.. ...+++|++|++++|.+++..+..++.. + +|++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 33445678899999999875421 1 12222 2378999999999999887777767663 4 4999
Q ss_pred EeccCCCCCCcccccccccccc-cccCCCCCcEEEccCCCCCCCC-C-hhhhhCCCCCCCEEEeecCCCCC----CCCCc
Q 006657 170 LDLSIDTHNPISFSFLYLENFS-WLSGLSLLKHLDLTGVDLSTAS-D-WFLVTNMLPSLQVLKLSACSLHN----SLPEL 242 (636)
Q Consensus 170 L~Ls~n~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~n~l~~~~-~-~~~~~~~l~~L~~L~L~~n~l~~----~~p~~ 242 (636)
|++++|.. ... ..+. ...++++|++|+|++|.+++.. . +......+++|++|++++|.+++ .++ .
T Consensus 143 L~L~~~~~--~~~-----~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~ 214 (592)
T 3ogk_B 143 LKLDKCSG--FTT-----DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-T 214 (592)
T ss_dssp EEEESCEE--EEH-----HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-H
T ss_pred EECcCCCC--cCH-----HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-H
Confidence 99998751 100 1111 1347899999999999887652 2 22344678999999999999873 223 3
Q ss_pred cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc---ccCCccccCCCCCCEEEccCCcCCcccchhhhC
Q 006657 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG---GPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHK 319 (636)
Q Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 319 (636)
.+.++++|+.|++++|.+.+ ++ ..+.++++|++|+++..... +..+..+..+++|+.|+++++. .+.+|..+..
T Consensus 215 ~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~ 291 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPF 291 (592)
T ss_dssp HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGG
T ss_pred HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhh
Confidence 35678999999999999874 55 88999999999999864332 3345567888999999999864 3467888888
Q ss_pred CCCCCEEEccCccccccc-------CccceEEEccCCCCccccchHHHHhhhcCceEecCC-----------CcCccc-C
Q 006657 320 FTRLEYLSLRENRLQGMI-------SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRS-----------NKFDGQ-I 380 (636)
Q Consensus 320 l~~L~~L~L~~n~l~~~~-------p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~-----------n~l~~~-~ 380 (636)
+++|++|++++|.+++.. ..+|+.|+++ +.+.+.....+...+++|++|++++ |.+++. +
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 999999999999976542 2378888888 4444443344444578899999983 566543 2
Q ss_pred ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECc
Q 006657 381 PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLS 460 (636)
Q Consensus 381 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 460 (636)
+.....+++|++|+++.|++++..+..+.. .+++|+.|+++
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~---------------------------------------~~~~L~~L~l~ 411 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGT---------------------------------------YLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHH---------------------------------------HCCSCCEEEEE
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHh---------------------------------------hCCCCcEEEEe
Confidence 223455788999999888888766555443 13348889996
Q ss_pred ----CCccCcc-----CCcccccccCCCeEeCCCcc--CcCCCCcccc-CCCCCCEEeCCCCCCCc-cCchhccCCCCCC
Q 006657 461 ----GNNLSGD-----IPEEMTNLLALQSLNLSHNF--LAGKIPENVG-AMRSLESIDFSGNLLSG-RIPQSISSLTFLS 527 (636)
Q Consensus 461 ----~N~l~g~-----~p~~~~~l~~L~~L~Ls~N~--l~~~ip~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~ 527 (636)
.|++++. ++..+.++++|++|++++|. +++..+..++ .+++|++|++++|++++ .++..+..+++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 7788864 44457789999999998543 7766555554 48899999999999987 3566678899999
Q ss_pred eeeccCCcCccc-CCCC-CccCCccccccCCCC
Q 006657 528 HLNLSDNNLTGK-IPLG-TQLQGFNASCFAGNN 558 (636)
Q Consensus 528 ~L~ls~N~l~g~-ip~~-~~~~~~~~~~~~~n~ 558 (636)
+|++++|++++. ++.. ..+..+....+.+|.
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 999999998754 2211 123444444555553
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=244.61 Aligned_cols=243 Identities=23% Similarity=0.215 Sum_probs=149.1
Q ss_pred CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+++|++|++++|.+++ +++..+..+++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 3445555555555542 222445555555555555555543332 445555555555555544221 12455555
Q ss_pred EccCcccccccCc---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccC-CCCCCCEEEccCccCcc
Q 006657 327 SLRENRLQGMISS---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHILDLSHNNFSG 402 (636)
Q Consensus 327 ~L~~n~l~~~~p~---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~ 402 (636)
++++|++++..+. .|+.|++++|.+++..|..+. .+++|++|++++|.+++..+..+. .+++|++|++++|++++
T Consensus 105 ~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp ECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 5555555433221 344444444444443333443 377888888888888876666653 67788888888888774
Q ss_pred ccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEe
Q 006657 403 TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLN 482 (636)
Q Consensus 403 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 482 (636)
. |... .+++|++|++++|++++ +|..+..+++|++|+
T Consensus 184 ~-~~~~-----------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 184 V-KGQV-----------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp E-ECCC-----------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred c-cccc-----------------------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 3 2111 13447888888888884 455588888888888
Q ss_pred CCCccCcCCCCccccCCCCCCEEeCCCCCCC-ccCchhccCCCCCCeeecc-CCcCcccCCC
Q 006657 483 LSHNFLAGKIPENVGAMRSLESIDFSGNLLS-GRIPQSISSLTFLSHLNLS-DNNLTGKIPL 542 (636)
Q Consensus 483 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~ 542 (636)
+++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.++++ .+.+.|..|.
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 8888888 56777888888888888888887 6777788888888888888 3445555443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.2e-28 Score=246.24 Aligned_cols=265 Identities=22% Similarity=0.200 Sum_probs=127.3
Q ss_pred CCCCC-CCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCC----ccccccCCCCCcc-eeecCcccc-------CCCCCC
Q 006657 53 LASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEP----FWLEDYDDETSKL-IGKINPSLL-------DLKHLV 119 (636)
Q Consensus 53 l~~W~-~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~----~~l~~~~~~~~~l-~g~i~~~l~-------~l~~L~ 119 (636)
..+|. ...|+.+..+.......+++.++++++.+ ..| ..++.+++++|.+ .+.+|..+. ++++|+
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence 45676 34555666554322223466666666644 222 1244455555555 334444443 455555
Q ss_pred EEeCCCCCCCCCCCchhh--cCCCCCCEEEccCCccCCCCCccCcCC-----CCCCeEeccCCCCCCccccccccccccc
Q 006657 120 YLDLSNNNFENNQIPVFL--GFMGSLRHIDLSRAELTGMIPHQLGNL-----FNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 120 ~L~Ls~n~l~~~~ip~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
+|++++|.+++. +|..+ +.+++|++|++++|++++. |..++.+ ++|++|++++|++...+.. .
T Consensus 99 ~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--------~ 168 (312)
T 1wwl_A 99 ELTLENLEVTGT-APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE--------Q 168 (312)
T ss_dssp EEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--------T
T ss_pred EEEccCCcccch-hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH--------H
Confidence 555555555543 44433 5555555555555555544 4444444 5555555555555443211 1
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhh--CCCCCCCEEEeecCCCCC--CCCCccccCCCCCcEEEcccCCCCCCCChhh
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVT--NMLPSLQVLKLSACSLHN--SLPELPIANFSSLYTLDLSYNEFDNTLVPSW 268 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (636)
+.++++|++|++++|.+.+....+..+ ..+++|++|++++|++++ .++...+.++++|++|++++|.+++..+...
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 445555555555555544321111122 445555555555555542 1111122344555555555555554332233
Q ss_pred hcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 269 LFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 344455555555555554 4444443 4555555555555543 33 445555555555555544
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1e-27 Score=245.66 Aligned_cols=207 Identities=23% Similarity=0.186 Sum_probs=123.6
Q ss_pred CcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 102 SKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 102 ~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
+.+...+...+..+++|++|++++|.+++. .|..++.+++|++|++++|.+++..| +..+++|++|++++|.+..
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-- 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-- 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE--
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc--
Confidence 355444444455667888888888888864 56778888888888888888875544 7788888888888876543
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
+...++|++|++++|.+++.+. ..+++|++|++++|++++..+ ..+..+++|++|++++|.++
T Consensus 95 -----------l~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 95 -----------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp -----------EEECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCC
T ss_pred -----------ccCCCCcCEEECCCCccCCcCc-----cccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCC
Confidence 2233667777777776665531 234566666666666654333 44555566666666666655
Q ss_pred CCCChhhh-cCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 262 NTLVPSWL-FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 262 ~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+..+ ..+ ..+++|++|++++|.+++. | ....+++|++|++++|++++. |..+..+++|++|++++|+++
T Consensus 158 ~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 158 TVNF-AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp EEEG-GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC
T ss_pred cccH-HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc
Confidence 3333 332 3455566666666655533 2 122355555555555555532 223555555555555555544
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-26 Score=248.86 Aligned_cols=231 Identities=23% Similarity=0.218 Sum_probs=113.1
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|+.|+|++|.+++ +++..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 44444444444442 222444445555555555555443332 4445555555555554443221 144555555
Q ss_pred cCcccccccCc---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccC-CCCCCCEEEccCccCcccc
Q 006657 329 RENRLQGMISS---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHILDLSHNNFSGTL 404 (636)
Q Consensus 329 ~~n~l~~~~p~---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~ 404 (636)
++|.+++..+. .|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 55544432211 2223333333333333333332 55566666666666655555554 4556666666666655331
Q ss_pred chhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCC
Q 006657 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 405 p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls 484 (636)
+.. .++.|+.|+|++|.+++ +|+.+..+++|+.|+|+
T Consensus 186 ~~~------------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 186 GQV------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (487)
T ss_dssp CCC------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred ccc------------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEec
Confidence 110 12235566666666654 33335566666666666
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCC-ccCchhccCCCCCCeeecc
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLS-GRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 532 (636)
+|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666653 4555555666666666666665 4455555555555555554
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.6e-24 Score=216.56 Aligned_cols=217 Identities=23% Similarity=0.256 Sum_probs=150.1
Q ss_pred CCCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhc
Q 006657 59 GNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLG 138 (636)
Q Consensus 59 ~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~ 138 (636)
.++|.|.|+.|.- .+.++.++++++ .+. .+|..+. +++++|++++|.++.. .+..+.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~------------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~ 58 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK------------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFH 58 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS------------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC------------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhc
Confidence 5789999999853 234566777765 333 3454443 5677888888877753 444677
Q ss_pred CCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhh
Q 006657 139 FMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLV 218 (636)
Q Consensus 139 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 218 (636)
.+++|++|++++|.++...+..+.++++|++|++++|.+...+.. .
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------------~ 104 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG----------------------------------V 104 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT----------------------------------T
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh----------------------------------H
Confidence 777777777777777744444456677777777776665443211 2
Q ss_pred hCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC
Q 006657 219 TNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS 298 (636)
Q Consensus 219 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 298 (636)
+..+++|++|++++|.+++..+ ..+.++++|++|++++|.++ .+++..+..+++|++|++++|++++..+..+.++++
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 3445566666666666654333 45677778888888888876 455466778888888888888888766666788888
Q ss_pred CCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 299 LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 299 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 888888888888766667888888888888888775
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.2e-24 Score=218.25 Aligned_cols=211 Identities=25% Similarity=0.242 Sum_probs=137.5
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|++|++++|.++ .+++..+.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4555555555554 233245555555555555555555444445555555555555555555444445555555555555
Q ss_pred cCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccc-cchh
Q 006657 329 RENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT-LPRC 407 (636)
Q Consensus 329 ~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~ 407 (636)
++|+ +++..+..+..+++|++|++++|++++. +|..
T Consensus 108 ~~n~-------------------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 108 VETN-------------------------------------------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp TTSC-------------------------------------------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CCCC-------------------------------------------ccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 5544 4443344566667777777777777652 4655
Q ss_pred hhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCC----eEeC
Q 006657 408 INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQ----SLNL 483 (636)
Q Consensus 408 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~----~L~L 483 (636)
+.++++ |++|++++|++++..+..+..+++|+ +|++
T Consensus 145 ~~~l~~----------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 145 FSNLTN----------------------------------------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp GGGCTT----------------------------------------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred hccCCC----------------------------------------CCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 554443 66777777777766666676666666 7888
Q ss_pred CCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCC
Q 006657 484 SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544 (636)
Q Consensus 484 s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 544 (636)
++|++++..+..+. ..+|++|++++|++++..+..+..+++|++|++++|+++|.+|...
T Consensus 185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 89988865554444 4589999999999997777778889999999999999999998643
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.3e-25 Score=239.39 Aligned_cols=216 Identities=20% Similarity=0.175 Sum_probs=191.8
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccC-ccceEEEccCCCC
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS-SVLVVFDIGENGF 351 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~L~~L~l~~n~l 351 (636)
++|++|++++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ ..|+.|++++|.+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 489999999999998888899999999999999999997766 8999999999999999997654 5899999999999
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhh-hhhhhccccCCCccccccccc
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN-NLTAMMNQENSMETDKEYDTF 430 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~~~~~~~~~~~~~~~ 430 (636)
++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+. .++
T Consensus 112 ~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~------------------ 169 (487)
T 3oja_A 112 SRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD------------------ 169 (487)
T ss_dssp CCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT------------------
T ss_pred CCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC------------------
Confidence 976554 268899999999999999899999999999999999999988887664 344
Q ss_pred eeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCC
Q 006657 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510 (636)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 510 (636)
.|+.|+|++|.+++..+ ...+++|++|+|++|.+++. |..+..+++|+.|+|++|
T Consensus 170 ----------------------~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 170 ----------------------TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp ----------------------TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTS
T ss_pred ----------------------cccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCC
Confidence 38999999999997633 44699999999999999965 455999999999999999
Q ss_pred CCCccCchhccCCCCCCeeeccCCcCcc
Q 006657 511 LLSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 511 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
++++ +|..+..+++|++|++++|++.|
T Consensus 225 ~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 225 KLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 9995 78889999999999999999984
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.5e-24 Score=210.97 Aligned_cols=140 Identities=22% Similarity=0.223 Sum_probs=111.3
Q ss_pred hhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+.++++
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------------- 134 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK----------------------------- 134 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-----------------------------
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC-----------------------------
Confidence 444445555555555444455677788888888888888666655555444
Q ss_pred cccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccC
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISS 522 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 522 (636)
|++|+|++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 135 -----------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 135 -----------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp -----------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -----------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 788899999988766667899999999999999999877777999999999999999999777777889
Q ss_pred CCCCCeeeccCCcCcccCCC
Q 006657 523 LTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 523 l~~L~~L~ls~N~l~g~ip~ 542 (636)
+++|++|++++|++.|.++.
T Consensus 204 l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTCCEEECCSSCBCCSSSS
T ss_pred ccCCCEEEecCCCeeCCCcc
Confidence 99999999999999998874
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=4.3e-27 Score=262.52 Aligned_cols=376 Identities=14% Similarity=0.095 Sum_probs=202.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhc-CCCCCCEEEccCC-ccCCC-CCccCcCCCCCCeEeccCCCCCCccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLG-FMGSLRHIDLSRA-ELTGM-IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENF 190 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l 190 (636)
.+++|++|+|++|.+++. .+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+.......+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~---- 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS---- 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG----
T ss_pred hCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH----
Confidence 456666666666665543 333332 4666666666666 33322 233333566666666666654332111100
Q ss_pred ccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCC-------CC
Q 006657 191 SWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE-------FD 261 (636)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-------l~ 261 (636)
.....+++|++|+++++. ... ..+......+++|++|++++|...+.++ ..+.++++|+.|+++.+. +.
T Consensus 178 ~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHH
Confidence 012255566666666655 111 1111122335666666666662222233 344555666666654432 11
Q ss_pred CCCChhhhcCCCCCcEE-EccCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccccc-c-
Q 006657 262 NTLVPSWLFGLSHLVFL-DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGM-I- 337 (636)
Q Consensus 262 ~~~~~~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~-~- 337 (636)
.++ ..+.++++|+.| .+..... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. +
T Consensus 256 -~l~-~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 256 -GLS-VALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp -HHH-HHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred -HHH-HHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 122 345566666666 2332221 2344444456777777777777654322 23456777777777776 3321 1
Q ss_pred -----CccceEEEc---------cCCCCccccchHHHHhhhcCceEecCCCcCcccCccccC-CCCCCCEEEcc--C---
Q 006657 338 -----SSVLVVFDI---------GENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHILDLS--H--- 397 (636)
Q Consensus 338 -----p~~L~~L~l---------~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~--- 397 (636)
-..|+.|++ +.+.+++.....+...+++|+.|.+..|.+++..+..+. .+++|+.|+++ +
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 125666666 234444433333433466666666666666654444443 35666677666 2
Q ss_pred -ccCccccc-hhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCccccc-
Q 006657 398 -NNFSGTLP-RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN- 474 (636)
Q Consensus 398 -N~l~~~~p-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~- 474 (636)
|++++... ..+ ......+++|+.|++++ .+++..+..+..
T Consensus 412 ~~~l~~~~~~~~~------------------------------------~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 412 PDYLTLEPLDIGF------------------------------------GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp CCTTTCCCTHHHH------------------------------------HHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred cccccCCchhhHH------------------------------------HHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 33331100 011 01123345688888877 666665555555
Q ss_pred ccCCCeEeCCCccCcCCCCccc-cCCCCCCEEeCCCCCCCccCch-hccCCCCCCeeeccCCcCc
Q 006657 475 LLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQ-SISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 475 l~~L~~L~Ls~N~l~~~ip~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 537 (636)
+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 7888888888888876555444 5678888888888888654443 3345788888888888874
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.6e-23 Score=211.28 Aligned_cols=208 Identities=21% Similarity=0.228 Sum_probs=155.4
Q ss_pred hcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccC
Q 006657 269 LFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGE 348 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~ 348 (636)
+.++++++++++++++++ .+|..+. +++++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------ 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc------------
Confidence 445556666666666665 3444443 5666677777766666666666667777777766666522
Q ss_pred CCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccc
Q 006657 349 NGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYD 428 (636)
Q Consensus 349 n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~ 428 (636)
+.. ..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..|..|.++++
T Consensus 71 -------~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~--------------- 125 (290)
T 1p9a_G 71 -------QVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--------------- 125 (290)
T ss_dssp -------ECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------
T ss_pred -------cCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---------------
Confidence 111 12566777777777776 56777888889999999999988666666665554
Q ss_pred cceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCC
Q 006657 429 TFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508 (636)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls 508 (636)
|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|+
T Consensus 126 -------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 126 -------------------------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp -------------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -------------------------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 7889999999997777778899999999999999996666667889999999999
Q ss_pred CCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 509 GNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 509 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
+|+++ .+|..+....+|+++++++|++.|.+..
T Consensus 181 ~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 99998 6888888888999999999999987743
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.7e-23 Score=208.42 Aligned_cols=231 Identities=25% Similarity=0.213 Sum_probs=185.4
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD 279 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 279 (636)
...+..+..+...|. .+ .++|++|++++|++++..+ ..+.++++|++|++++|.++ .+++..+.++++|++|+
T Consensus 10 ~~~~c~~~~l~~ip~---~l--~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 82 (276)
T 2z62_A 10 ITYQCMELNFYKIPD---NL--PFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82 (276)
T ss_dssp TEEECTTSCCSSCCS---SS--CTTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred ceEEecCCCccccCC---CC--CCCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEE
Confidence 356667777776654 22 2579999999999986544 68999999999999999998 55557899999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHH
Q 006657 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWI 359 (636)
Q Consensus 280 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~ 359 (636)
+++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------- 139 (276)
T 2z62_A 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------- 139 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred CCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----------------------
Confidence 999999988888899999999999999999977666788888888888877776521
Q ss_pred HHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEE
Q 006657 360 GEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVV 439 (636)
Q Consensus 360 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (636)
.+|..+..+++|++|++++|++++..+..+..+..++.
T Consensus 140 -------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----------------------- 177 (276)
T 2z62_A 140 -------------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL----------------------- 177 (276)
T ss_dssp -------------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT-----------------------
T ss_pred -------------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc-----------------------
Confidence 24566777888889999999888777777776665422
Q ss_pred eecccccccccccccc-EEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 440 MKGRELAYNTMLKLVR-CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 440 ~~~~~~~~~~~~~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+. .|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|++|++++|.+.+..|
T Consensus 178 --------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 178 --------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp --------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred --------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 23 799999999865555444 4589999999999997766778899999999999999987543
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=6.4e-27 Score=261.15 Aligned_cols=391 Identities=15% Similarity=0.091 Sum_probs=272.4
Q ss_pred ccccCCCCCcceeecCcccc-CCCCCCEEeCCCC-CCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCc----CCCCC
Q 006657 94 LEDYDDETSKLIGKINPSLL-DLKHLVYLDLSNN-NFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG----NLFNL 167 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~-~l~~L~~L~Ls~n-~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L 167 (636)
++.++++++.+.+..+..+. .+++|++|++++| .++...++..+.++++|++|++++|.+++..+..+. .+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 45555666677777777775 6899999999999 555433566667899999999999998876554443 67899
Q ss_pred CeEeccCCCCCCccccccccccccc-ccCCCCCcEEEccCCC-CCCCCChhhhhCCCCCCCEEEeecCCCC------CCC
Q 006657 168 QYLDLSIDTHNPISFSFLYLENFSW-LSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLH------NSL 239 (636)
Q Consensus 168 ~~L~Ls~n~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~------~~~ 239 (636)
++|++++|. ..... ..+.. ..++++|++|++++|. +.+ ++..+..+++|++|++..+... ..+
T Consensus 187 ~~L~l~~~~-~~~~~-----~~l~~l~~~~~~L~~L~L~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 187 VSLNISCLA-SEVSF-----SALERLVTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp CEEECTTCC-SCCCH-----HHHHHHHHHCTTCCEEECCTTSCHHH---HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred cEEEecccC-CcCCH-----HHHHHHHHhCCCCcEEecCCCCcHHH---HHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 999999885 11111 11111 3467999999999883 222 4456678899999997765421 012
Q ss_pred CCccccCCCCCcEE-EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCc-cccCCCCCCEEEccCCcCCcc-cchh
Q 006657 240 PELPIANFSSLYTL-DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD-GLQNLTSLEHLDLRSNNFISS-IPTW 316 (636)
Q Consensus 240 p~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~-~p~~ 316 (636)
+ ..+.++++|+.| .+..... +.++ ..+..+++|++|++++|.+++.... .+..+++|++|++++| +... ++..
T Consensus 258 ~-~~l~~~~~L~~Ls~~~~~~~-~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 258 S-VALSGCKELRCLSGFWDAVP-AYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp H-HHHHTCTTCCEEECCBTCCG-GGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred H-HHHhcCCCcccccCCcccch-hhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 2 256788889988 4433322 2333 4555778999999999987644322 2568899999999988 4422 3333
Q ss_pred hhCCCCCCEEEccC---------ccccccc-------CccceEEEccCCCCccccchHHHHhhhcCceEecC--C----C
Q 006657 317 LHKFTRLEYLSLRE---------NRLQGMI-------SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLR--S----N 374 (636)
Q Consensus 317 l~~l~~L~~L~L~~---------n~l~~~~-------p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~--~----n 374 (636)
...+++|++|++++ +.+++.. -..|+.|+++.|.+++..+..+...+++|+.|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 34588999998843 4554321 24788999999999887777777668999999999 4 4
Q ss_pred cCcc-----cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccccccc
Q 006657 375 KFDG-----QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNT 449 (636)
Q Consensus 375 ~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (636)
.+++ .++..+..+++|+.|++++ .+++..+..+..
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~--------------------------------------- 453 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT--------------------------------------- 453 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH---------------------------------------
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH---------------------------------------
Confidence 5552 2223366788999999977 666554444432
Q ss_pred ccccccEEECcCCccCccCCccc-ccccCCCeEeCCCccCcCCCCc-cccCCCCCCEEeCCCCCCCccCchhc-cCCCCC
Q 006657 450 MLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPE-NVGAMRSLESIDFSGNLLSGRIPQSI-SSLTFL 526 (636)
Q Consensus 450 ~~~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~~~ip~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L 526 (636)
.+++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|++|++++|+++......+ ..++.|
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 13448999999999987766555 6799999999999999765443 34568999999999999965444444 456777
Q ss_pred CeeeccCCcCc
Q 006657 527 SHLNLSDNNLT 537 (636)
Q Consensus 527 ~~L~ls~N~l~ 537 (636)
+...+..+.-.
T Consensus 534 ~i~~~~~~~~~ 544 (594)
T 2p1m_B 534 NVEVIDERGAP 544 (594)
T ss_dssp EEEEECSSSCG
T ss_pred EEEEecCCCcc
Confidence 66666655433
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.1e-24 Score=212.56 Aligned_cols=204 Identities=24% Similarity=0.238 Sum_probs=143.4
Q ss_pred cCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCC
Q 006657 270 FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGEN 349 (636)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n 349 (636)
..+++|++|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-------------- 99 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-------------- 99 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC--------------
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc--------------
Confidence 345556666666665542 2 2355566666666666666542 245566666666666665552
Q ss_pred CCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccc
Q 006657 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDT 429 (636)
Q Consensus 350 ~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~ 429 (636)
+|......+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 100 -----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---------------- 158 (272)
T 3rfs_A 100 -----LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN---------------- 158 (272)
T ss_dssp -----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------
T ss_pred -----cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc----------------
Confidence 22221113566666666666666666666778888888888888888666555555444
Q ss_pred ceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCC
Q 006657 430 FTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509 (636)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~ 509 (636)
|++|++++|++++..+..++.+++|++|++++|++++..|..+..+++|+.|++++
T Consensus 159 ------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 159 ------------------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp ------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ------------------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 78889999998877777788899999999999999988887788999999999999
Q ss_pred CCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 510 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
|.+.+.. +.|+.++++.|.++|.+|..
T Consensus 215 N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 215 NPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred CCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 9888654 46888999999999998863
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.1e-23 Score=220.01 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=152.8
Q ss_pred EEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh----hhhcCCC-CCcEEEccCCcCcccCCccccCC-----C
Q 006657 228 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP----SWLFGLS-HLVFLDLGFNSFGGPIPDGLQNL-----T 297 (636)
Q Consensus 228 L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~ 297 (636)
+.++.|.+++.+| ..+...++|++|++++|.++ ..++ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 5667777776666 34444555777777777775 3443 4556666 67777777777776655555543 7
Q ss_pred CCCEEEccCCcCCcccchhhh----CC-CCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHh----hhcCce
Q 006657 298 SLEHLDLRSNNFISSIPTWLH----KF-TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK----LLRNLI 368 (636)
Q Consensus 298 ~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~----~~~L~~ 368 (636)
+|++|++++|.+++..+..+. .+ ++|++|++++|++++ ..+..+... ..+|++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~------------------~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS------------------KSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG------------------SCHHHHHHHHTTSCTTCCE
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc------------------HHHHHHHHHHHhCCCceeE
Confidence 777777777777766555333 33 677777777776653 333333221 136666
Q ss_pred EecCCCcCcccC----ccccCCCC-CCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecc
Q 006657 369 LRLRSNKFDGQI----PAELCRLT-SLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGR 443 (636)
Q Consensus 369 L~L~~n~l~~~~----p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (636)
|++++|.+++.. +..+...+ +|++|++++|++++..+..+...-.
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------------------------------ 192 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA------------------------------ 192 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH------------------------------
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH------------------------------
Confidence 666666666422 23334444 6777777777776655554433210
Q ss_pred cccccccc-ccccEEECcCCccCcc----CCccccc-ccCCCeEeCCCccCcCCCC----ccccCCCCCCEEeCCCCCCC
Q 006657 444 ELAYNTML-KLVRCMDLSGNNLSGD----IPEEMTN-LLALQSLNLSHNFLAGKIP----ENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 444 ~~~~~~~~-~~L~~L~Ls~N~l~g~----~p~~~~~-l~~L~~L~Ls~N~l~~~ip----~~~~~l~~L~~L~Ls~N~l~ 513 (636)
.. +.|++|||++|.+++. ++..+.. .++|++|+|++|++++..+ ..+..+++|++|++++|.+.
T Consensus 193 ------~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 193 ------SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp ------TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred ------hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 11 2367777777777653 3444444 3477777777777765433 23455677777777777744
Q ss_pred ccCc-------hhccCCCCCCeeeccCCcCccc
Q 006657 514 GRIP-------QSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 514 ~~~p-------~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+..+ ..+..+++|++||+++|++.+.
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3322 3455666777777777776654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.9e-22 Score=201.17 Aligned_cols=204 Identities=23% Similarity=0.218 Sum_probs=177.5
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccc
Q 006657 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENF 190 (636)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l 190 (636)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..+.++++|++|++++|.+...+.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------- 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------- 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------
Confidence 4678899999999999998 5776664 799999999999998888899999999999999998865421
Q ss_pred ccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhc
Q 006657 191 SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF 270 (636)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~ 270 (636)
...+++|++|++++|.++..+. .+..+++|++|++++|++++..+ ..+.++++|++|++++|+++ .+++..|.
T Consensus 73 --~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~ 145 (290)
T 1p9a_G 73 --DGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELK-TLPPGLLT 145 (290)
T ss_dssp --CSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCC-CCCTTTTT
T ss_pred --CCCCCcCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCC-ccChhhcc
Confidence 3678999999999999997765 56789999999999999985444 67999999999999999998 56658889
Q ss_pred CCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
.+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+++++++|++.
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9999999999999999666666788999999999999998 67778888889999999999875
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.7e-23 Score=206.15 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=19.3
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCC
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAM 499 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l 499 (636)
|+.|++++|.+.+. +++|+.|+++.|.++|.+|.+++.+
T Consensus 207 L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 207 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 44455555544432 2345555555555555555555443
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.2e-24 Score=226.07 Aligned_cols=243 Identities=18% Similarity=0.227 Sum_probs=145.2
Q ss_pred ccCCCCCcEEEcccCCCCCCCC---hhhhcCCCCCcEEEccCC---cCcccCCccc-------cCCCCCCEEEccCCcCC
Q 006657 244 IANFSSLYTLDLSYNEFDNTLV---PSWLFGLSHLVFLDLGFN---SFGGPIPDGL-------QNLTSLEHLDLRSNNFI 310 (636)
Q Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~~n~l~ 310 (636)
+..+++|++|++++|.+++..+ ...+..+++|++|++++| ++++.+|..+ ..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3344455555555555442211 012445555555555553 2333344333 46666777777777666
Q ss_pred c----ccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhh---------hcCceEecCCCcCc
Q 006657 311 S----SIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKL---------LRNLILRLRSNKFD 377 (636)
Q Consensus 311 ~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~---------~~L~~L~L~~n~l~ 377 (636)
+ .+|..+..+++|++|++++|.+++..+. .++..+.. + ++|++|++++|+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------------~l~~~l~~-l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------------KIARALQE-LAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------------HHHHHHHH-HHHHHHHHTCCCCCEEECCSSCCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------------HHHHHHHH-HhhhhhcccCCCCcEEECCCCCCC
Confidence 5 3555666667777777666665422110 11122211 2 56777777777765
Q ss_pred -ccCc---cccCCCCCCCEEEccCccCccc-----cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccc
Q 006657 378 -GQIP---AELCRLTSLHILDLSHNNFSGT-----LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN 448 (636)
Q Consensus 378 -~~~p---~~l~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (636)
+.+| ..+..+++|++|++++|+++.. +|..+.
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--------------------------------------- 213 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--------------------------------------- 213 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---------------------------------------
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh---------------------------------------
Confidence 3333 3555667777777777776621 121222
Q ss_pred cccccccEEECcCCccC----ccCCcccccccCCCeEeCCCccCcCC----CCccc--cCCCCCCEEeCCCCCCCc----
Q 006657 449 TMLKLVRCMDLSGNNLS----GDIPEEMTNLLALQSLNLSHNFLAGK----IPENV--GAMRSLESIDFSGNLLSG---- 514 (636)
Q Consensus 449 ~~~~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~--~~l~~L~~L~Ls~N~l~~---- 514 (636)
.+++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. +|..+ +.+++|++|+|++|++++
T Consensus 214 -~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 214 -YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp -GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred -cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 2334777888888775 56677777788888888888888765 45555 337888888888888886
Q ss_pred cCchhc-cCCCCCCeeeccCCcCcccCC
Q 006657 515 RIPQSI-SSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 515 ~~p~~l-~~l~~L~~L~ls~N~l~g~ip 541 (636)
.+|..+ .++++|++|++++|++++..|
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477666 557888888888888876654
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=206.08 Aligned_cols=229 Identities=21% Similarity=0.207 Sum_probs=156.8
Q ss_pred CCcEEEcccCCCCCCCChh--hhcCCCCCcEEEccCCcCcccCCccc--cCCCCCCEEEccCCcCCcccc----hhhhCC
Q 006657 249 SLYTLDLSYNEFDNTLVPS--WLFGLSHLVFLDLGFNSFGGPIPDGL--QNLTSLEHLDLRSNNFISSIP----TWLHKF 320 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~~l 320 (636)
.++.+.+.++.++...... .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3556666665553211100 11223557777777777777777666 677777777777777776444 334456
Q ss_pred CCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc--C--ccccCCCCCCCEEEcc
Q 006657 321 TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ--I--PAELCRLTSLHILDLS 396 (636)
Q Consensus 321 ~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls 396 (636)
++|++|++++|++.+..+ ..+. .+++|++|++++|++.+. + +..+..+++|++|+++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~------------------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSC------------------EQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp SCCCEEEEECCSSCCCCT------------------TSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred cCCCEEEeeCCCcchhhH------------------HHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 777777777776653222 2222 266777777777776542 2 2234678899999999
Q ss_pred CccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccc-
Q 006657 397 HNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL- 475 (636)
Q Consensus 397 ~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l- 475 (636)
+|+++ .+|.....+ .+.+++|++|||++|++++.+|..+..+
T Consensus 206 ~N~l~-~l~~~~~~l------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 206 NTGME-TPTGVCAAL------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp SSCCC-CHHHHHHHH------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCC-chHHHHHHH------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 99987 333321111 1123448899999999998888888777
Q ss_pred --cCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc
Q 006657 476 --LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 476 --~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 7788775 8999999999999964 43 6788999999999999874
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.3e-23 Score=215.08 Aligned_cols=231 Identities=19% Similarity=0.238 Sum_probs=134.8
Q ss_pred CCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCccc-CCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 248 SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP-IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
++++.|++++|.+.+..+ . +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-E-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCC-S-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccch-h-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 334444444444433222 1 23344455555555444433 44444455555555555555554445555555555555
Q ss_pred EccCc-ccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCC-cCccc-CccccCCCC-CCCEEEccCc--cC
Q 006657 327 SLREN-RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSN-KFDGQ-IPAELCRLT-SLHILDLSHN--NF 400 (636)
Q Consensus 327 ~L~~n-~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~Ls~N--~l 400 (636)
++++| .+++. .++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++| .+
T Consensus 148 ~L~~~~~l~~~-----------------~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 148 NLSGCSGFSEF-----------------ALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp ECTTCBSCCHH-----------------HHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred ECCCCCCCCHH-----------------HHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 55555 33310 1233333 2555666666666 55543 455566677 7888888887 44
Q ss_pred c-cccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCc-cCccCCcccccccCC
Q 006657 401 S-GTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN-LSGDIPEEMTNLLAL 478 (636)
Q Consensus 401 ~-~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~~p~~~~~l~~L 478 (636)
+ +.+|..+.++ ++|+.|++++|. +++..+..+.++++|
T Consensus 210 ~~~~l~~~~~~~----------------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 210 QKSDLSTLVRRC----------------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CHHHHHHHHHHC----------------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CHHHHHHHHhhC----------------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 4 3444444433 337888888888 777777888888999
Q ss_pred CeEeCCCcc-CcCCCCccccCCCCCCEEeCCCCCCCccCchhccCC-CCCCeeeccCCcCcccCCC
Q 006657 479 QSLNLSHNF-LAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL-TFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 479 ~~L~Ls~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~ 542 (636)
++|++++|. ++......++.+++|++|++++| ++.. .+..+ ..++.|++++|++++..|.
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 999999985 33222235788899999999998 4432 23333 3477888999999988775
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=203.66 Aligned_cols=233 Identities=17% Similarity=0.193 Sum_probs=150.5
Q ss_pred CCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCccc--cCCCCCcEEEcccCCCCCCCC---hh
Q 006657 195 GLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELPI--ANFSSLYTLDLSYNEFDNTLV---PS 267 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~ 267 (636)
+...++.+.+.++.++.. .... ....+++|++|++++|.+.+..| ..+ ..+++|++|++++|.+++..+ ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 334577788877766543 1111 12234679999999999988888 455 889999999999999886443 23
Q ss_pred hhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcc--cc--hhhhCCCCCCEEEccCcccccccCccceE
Q 006657 268 WLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISS--IP--TWLHKFTRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 268 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p--~~l~~l~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
.+..+++|++|++++|++++..|..++.+++|++|++++|++.+. ++ ..+..+++|++|++++|+++
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------- 210 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--------- 210 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------
Confidence 445788899999999999887778888899999999999987653 22 22356778888888887775
Q ss_pred EEccCCCCccccch---HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC
Q 006657 344 FDIGENGFSGNIPA---WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420 (636)
Q Consensus 344 L~l~~n~l~g~ip~---~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 420 (636)
.++. .+...+++|++|+|++|++++..|..+..+ ..
T Consensus 211 ----------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~------------------------~~------- 249 (310)
T 4glp_A 211 ----------TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC------------------------MW------- 249 (310)
T ss_dssp ----------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC------------------------CC-------
T ss_pred ----------chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc------------------------cC-------
Confidence 2222 222234555555555555554444444333 11
Q ss_pred CccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC
Q 006657 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR 500 (636)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 500 (636)
+++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..++
T Consensus 250 ------------------------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~ 294 (310)
T 4glp_A 250 ------------------------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELP 294 (310)
T ss_dssp ------------------------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCC
T ss_pred ------------------------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCC
Confidence 012455555555555 4455443 5667777777777643 33 45667
Q ss_pred CCCEEeCCCCCCCc
Q 006657 501 SLESIDFSGNLLSG 514 (636)
Q Consensus 501 ~L~~L~Ls~N~l~~ 514 (636)
+|+.|++++|+++.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 77777777777653
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.9e-23 Score=215.71 Aligned_cols=267 Identities=22% Similarity=0.172 Sum_probs=189.9
Q ss_pred EEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCC---ccccCCC-CCcEEEcccCCCCCCCChhhhcCC----
Q 006657 201 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFS-SLYTLDLSYNEFDNTLVPSWLFGL---- 272 (636)
Q Consensus 201 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~l---- 272 (636)
.++++.|.+++.. +..+...++|++|++++|.+++..+. ..+.+++ +|++|++++|.+++..+ ..+..+
T Consensus 2 ~~~ls~n~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPV--EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHH--HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTS
T ss_pred ccccccccchHHH--HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhcc
Confidence 4678888888762 23455566799999999999753321 3467788 89999999999985544 556554
Q ss_pred -CCCcEEEccCCcCcccCCcccc----CC-CCCCEEEccCCcCCcccchhhh----C-CCCCCEEEccCcccccccCccc
Q 006657 273 -SHLVFLDLGFNSFGGPIPDGLQ----NL-TSLEHLDLRSNNFISSIPTWLH----K-FTRLEYLSLRENRLQGMISSVL 341 (636)
Q Consensus 273 -~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~L~~n~l~~~~p~~L 341 (636)
++|++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+. . .++|++|++++|++++..+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--- 155 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--- 155 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH---
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH---
Confidence 9999999999999977666443 44 8999999999999877765554 3 3689999999888774211
Q ss_pred eEEEccCCCCccccchHHHHhh-hcCceEecCCCcCcccCcccc----CCC-CCCCEEEccCccCccccchhhhhhhhhc
Q 006657 342 VVFDIGENGFSGNIPAWIGEKL-LRNLILRLRSNKFDGQIPAEL----CRL-TSLHILDLSHNNFSGTLPRCINNLTAMM 415 (636)
Q Consensus 342 ~~L~l~~n~l~g~ip~~~~~~~-~~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 415 (636)
..++..+.. . .+|++|+|++|++++..+..+ ... ++|++|++++|++++.....+...-.
T Consensus 156 -----------~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-- 221 (362)
T 3goz_A 156 -----------DELIQILAA-IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-- 221 (362)
T ss_dssp -----------HHHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--
T ss_pred -----------HHHHHHHhc-CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh--
Confidence 022333332 3 378888888888876665443 344 58999999999988643332221100
Q ss_pred cccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCC----cccccccCCCeEeCCCccCcCC
Q 006657 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIP----EEMTNLLALQSLNLSHNFLAGK 491 (636)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p----~~~~~l~~L~~L~Ls~N~l~~~ 491 (636)
...++|++|||++|.+++..+ ..+..+++|++|+|++|.+.+.
T Consensus 222 ---------------------------------~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 222 ---------------------------------SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp ---------------------------------HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred ---------------------------------cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 011348899999999986554 3356778999999999985533
Q ss_pred -------CCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 492 -------IPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 492 -------ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
++..+..+++|+.||+++|++....+..+
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 33467788999999999999987755444
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.9e-24 Score=225.38 Aligned_cols=241 Identities=22% Similarity=0.240 Sum_probs=173.6
Q ss_pred hCCCCCCCEEEeecCCCCCCCCC---ccccCCCCCcEEEcccCC---CCCCCCh------hhhcCCCCCcEEEccCCcCc
Q 006657 219 TNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLSYNE---FDNTLVP------SWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 219 ~~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~~L~~L~Ls~n~---l~~~~~~------~~l~~l~~L~~L~L~~n~l~ 286 (636)
+..+++|++|++++|.+++..+. ..+..+++|++|+|++|. +++.+|. ..+..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34455555555555555432110 124456666666666643 3334442 12467888999999999888
Q ss_pred c----cCCccccCCCCCCEEEccCCcCCcccchhhhC----C---------CCCCEEEccCcccccccCccceEEEccCC
Q 006657 287 G----PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHK----F---------TRLEYLSLRENRLQGMISSVLVVFDIGEN 349 (636)
Q Consensus 287 ~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~----l---------~~L~~L~L~~n~l~~~~p~~L~~L~l~~n 349 (636)
+ .+|..+..+++|++|+|++|.+++..+..+.. + ++|++|++++|+++.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------------- 173 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-------------- 173 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------------
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------------
Confidence 6 46777888999999999999987554444433 3 788888888887752
Q ss_pred CCccccc---hHHHHhhhcCceEecCCCcCc--c---cCccccCCCCCCCEEEccCccCc----cccchhhhhhhhhccc
Q 006657 350 GFSGNIP---AWIGEKLLRNLILRLRSNKFD--G---QIPAELCRLTSLHILDLSHNNFS----GTLPRCINNLTAMMNQ 417 (636)
Q Consensus 350 ~l~g~ip---~~~~~~~~~L~~L~L~~n~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~~ 417 (636)
+.+| ..+. .+++|+.|++++|+++ | ..|..+..+++|++|+|++|.++ +.+|..+..++
T Consensus 174 ---~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~----- 244 (386)
T 2ca6_A 174 ---GSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP----- 244 (386)
T ss_dssp ---GGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-----
T ss_pred ---HHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-----
Confidence 1334 3343 3789999999999988 3 34447889999999999999986 45555554443
Q ss_pred cCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCcc----CCccc--ccccCCCeEeCCCccCcC-
Q 006657 418 ENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD----IPEEM--TNLLALQSLNLSHNFLAG- 490 (636)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~----~p~~~--~~l~~L~~L~Ls~N~l~~- 490 (636)
+|++|+|++|.+++. +|..+ +.+++|++|+|++|.+++
T Consensus 245 -----------------------------------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 245 -----------------------------------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp -----------------------------------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred -----------------------------------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 488999999999876 56666 349999999999999997
Q ss_pred ---CCCccc-cCCCCCCEEeCCCCCCCccCc
Q 006657 491 ---KIPENV-GAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 491 ---~ip~~~-~~l~~L~~L~Ls~N~l~~~~p 517 (636)
.+|..+ .++++|++|++++|++++..+
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 488877 668999999999999998774
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.7e-23 Score=212.75 Aligned_cols=256 Identities=19% Similarity=0.206 Sum_probs=180.6
Q ss_pred CCcEEEccCCCCCCCCChhhhhCCC--CCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 198 LLKHLDLTGVDLSTASDWFLVTNML--PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
.++.++++++.+.. ..+..+ ++++.|++++|.+.+..+ .+..+++|++|++++|.+++...+..+..+++|
T Consensus 48 ~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 36677777666552 133334 678888888888876655 356788899999998888654233678888999
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCC-cCCcc-cchhhhCCCCCCEEEccCc-ccccccCccceEEEccCCCCc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN-NFISS-IPTWLHKFTRLEYLSLREN-RLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~L~~L~l~~n~l~ 352 (636)
++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++.
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---------------- 184 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---------------- 184 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH----------------
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH----------------
Confidence 99999999888778888888899999999998 67653 6667888889999988888 76632
Q ss_pred cccchHHHHhhh-cCceEecCCC--cCc-ccCccccCCCCCCCEEEccCcc-CccccchhhhhhhhhccccCCCcccccc
Q 006657 353 GNIPAWIGEKLL-RNLILRLRSN--KFD-GQIPAELCRLTSLHILDLSHNN-FSGTLPRCINNLTAMMNQENSMETDKEY 427 (636)
Q Consensus 353 g~ip~~~~~~~~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 427 (636)
.++..+.. ++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+.++++
T Consensus 185 -~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~-------------- 248 (336)
T 2ast_B 185 -HVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-------------- 248 (336)
T ss_dssp -HHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT--------------
T ss_pred -HHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC--------------
Confidence 24444443 77 8888888888 455 4566667778888888888887 66565655544433
Q ss_pred ccceeeceEEEEeeccccccccccccccEEECcCCc-cCccCCcccccccCCCeEeCCCccCcCCCCccccCC-CCCCEE
Q 006657 428 DTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN-LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAM-RSLESI 505 (636)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~L 505 (636)
|++|++++|. ++......++++++|++|++++| ++.. .+..+ .+++.|
T Consensus 249 --------------------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L 298 (336)
T 2ast_B 249 --------------------------LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHL 298 (336)
T ss_dssp --------------------------CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTS
T ss_pred --------------------------CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcce
Confidence 7788888884 33222235777888888888888 4322 23333 246677
Q ss_pred eCCCCCCCccCchhccC
Q 006657 506 DFSGNLLSGRIPQSISS 522 (636)
Q Consensus 506 ~Ls~N~l~~~~p~~l~~ 522 (636)
++++|++++..|..+..
T Consensus 299 ~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 299 QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EESCCCSCCTTCSSCSS
T ss_pred EEecccCccccCCcccc
Confidence 78888888888776553
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.7e-21 Score=190.85 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcC
Q 006657 60 NCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGF 139 (636)
Q Consensus 60 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~ 139 (636)
+||.|.|++|.. ..+.++++++. +. .+|..+. +++++|++++|.+++. .+..+..
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~------------------l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~ 57 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKS------------------LD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRG 57 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCC------------------CS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTT
T ss_pred cCCCCCceEcCC---CCeEEecCCCC------------------cc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcC
Confidence 588999999953 23456777652 22 4555443 5778888888887765 5566777
Q ss_pred CCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCC
Q 006657 140 MGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNP 179 (636)
Q Consensus 140 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~ 179 (636)
+++|++|++++|.+++..|..+.++++|++|++++|.+..
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc
Confidence 7777777777777776666666666666666666665543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.1e-22 Score=195.54 Aligned_cols=210 Identities=23% Similarity=0.245 Sum_probs=145.9
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSG 353 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g 353 (636)
..++++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 72 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------- 72 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence 4566777777666 4555443 56677777777766666656666666666666555544
Q ss_pred ccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceee
Q 006657 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIE 433 (636)
Q Consensus 354 ~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 433 (636)
+..|..+..+++|++|++++|++++..+..+..+++
T Consensus 73 ------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------------- 108 (251)
T 3m19_A 73 ------------------------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ-------------------- 108 (251)
T ss_dssp ------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT--------------------
T ss_pred ------------------------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCC--------------------
Confidence 344555677788888888888887655555554443
Q ss_pred ceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 434 LSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
|++|+|++|++++..+..+..+++|++|+|++|++++..+..|+.+++|++|+|++|+++
T Consensus 109 --------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 109 --------------------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp --------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred --------------------CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 788888888888666677888999999999999999777778999999999999999999
Q ss_pred ccCchhccCCCCCCeeeccCCcCcccCCCCC-ccCCccc-----cccCCCCCCCCCCCCCCC
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGKIPLGT-QLQGFNA-----SCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~~~~~~-----~~~~~n~lc~~~~~~~c~ 569 (636)
+..+..+..+++|++|++++|+++|..+... ...++.. ....++.+|+.|....|.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 230 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS 230 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccC
Confidence 8888889999999999999999998743321 1122211 123345677777777776
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.6e-21 Score=195.19 Aligned_cols=195 Identities=25% Similarity=0.365 Sum_probs=169.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
..++++|++|++++|.++. +| .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+...+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~---------- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS---------- 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG----------
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch----------
Confidence 4568899999999999984 55 588899999999999999854 44 999999999999999886642
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+.++++|++|++++|.+++.+ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ . +..
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~-~~-~-l~~ 171 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITN-IS--PLAGLTNLQYLSIGNAQVSD-LT-P-LAN 171 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCC-CG-G-GTT
T ss_pred hhcCCCCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCc-Cc--cccCCCCccEEEccCCcCCC-Ch-h-hcC
Confidence 3788999999999999999875 37889999999999999985 44 38899999999999999984 44 3 889
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999999999999986543 8899999999999999986653 8899999999999999874
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.6e-21 Score=195.98 Aligned_cols=192 Identities=23% Similarity=0.349 Sum_probs=117.7
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~---------------- 99 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---------------- 99 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC----------------
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC----------------
Confidence 4445555555555542 23 34555555555555555553322 5555555555555555441
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
++ .+. .+++|+.|++++|++++ ++. +..+++|++|++++|++++..+ +..+
T Consensus 100 ---~~-~~~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l-------------------- 150 (308)
T 1h6u_A 100 ---VS-AIA-GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGL-------------------- 150 (308)
T ss_dssp ---CG-GGT-TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGC--------------------
T ss_pred ---ch-hhc-CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCC--------------------
Confidence 11 111 24555555666665554 222 6677777777777777764332 3332
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
++|+.|++++|++++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|+
T Consensus 151 --------------------~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 151 --------------------TNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp --------------------TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred --------------------CCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 3377788888887743 33 7778888888888888875433 7778888888888888
Q ss_pred CCccCchhccCCCCCCeeeccCCcCcc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
+++..| +..+++|++|++++|++++
T Consensus 207 l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 207 ISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcccc--ccCCCCCCEEEccCCeeec
Confidence 875443 7778888888888888865
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.6e-21 Score=187.76 Aligned_cols=198 Identities=18% Similarity=0.187 Sum_probs=160.5
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCc-cCCCCCccCcCCCCCCeEeccC-CCCCCcccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAE-LTGMIPHQLGNLFNLQYLDLSI-DTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~~l~~l 193 (636)
++|++|++++|.+++. .+..++.+++|++|++++|. +++..+..|.++++|++|++++ |.+...+.. .+
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~--------~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD--------AL 101 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT--------SE
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH--------Hh
Confidence 3899999999999854 44478899999999999997 8766666889999999999998 888765422 26
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCC---EEEeecC-CCCCCCCCccccCCCCCc-EEEcccCCCCCCCChhh
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ---VLKLSAC-SLHNSLPELPIANFSSLY-TLDLSYNEFDNTLVPSW 268 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~ 268 (636)
.++++|++|++++|.+++.+. +..+++|+ +|++++| .+++ +|...+.++++|+ .|++++|.++ .+++..
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred CCCCCCCEEeCCCCCCccccc----cccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 788999999999999988764 55667777 9999999 8874 5546788999999 9999999998 777566
Q ss_pred hcCCCCCcEEEccCCc-CcccCCccccCC-CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 269 LFGLSHLVFLDLGFNS-FGGPIPDGLQNL-TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
+.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 665 889999999995 886667778888 999999999999985 4433 67889999988763
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2.9e-21 Score=189.24 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=60.6
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc-CcccCCccccCCCCCCEEEccC-CcCCcccchhhhCCCCCCEE
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS-FGGPIPDGLQNLTSLEHLDLRS-NNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 326 (636)
+|++|++++|+++ .+++..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 6777777777776 4554667777777777777776 6655555677777777777777 77776555667777777777
Q ss_pred EccCcccc
Q 006657 327 SLRENRLQ 334 (636)
Q Consensus 327 ~L~~n~l~ 334 (636)
++++|+++
T Consensus 111 ~l~~n~l~ 118 (239)
T 2xwt_C 111 GIFNTGLK 118 (239)
T ss_dssp EEEEECCC
T ss_pred eCCCCCCc
Confidence 77777665
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=8.8e-21 Score=207.41 Aligned_cols=206 Identities=23% Similarity=0.313 Sum_probs=163.1
Q ss_pred CCC-CCCCc-----ccccE-EeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCC
Q 006657 55 SWS-DGNCC-----TWAGV-VCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNN 127 (636)
Q Consensus 55 ~W~-~~~~c-----~w~gv-~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~ 127 (636)
+|. +.++| .|.|+ .|.. ++++.|+++++ .+.+ +|..+. ++|++|+|++|.
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n------------------~L~~-lp~~l~--~~L~~L~Ls~N~ 91 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRL------------------NLSS-LPDNLP--PQITVLEITQNA 91 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS------------------CCSC-CCSCCC--TTCSEEECCSSC
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCC------------------CCCc-cCHhHc--CCCCEEECcCCC
Confidence 453 44567 79999 7863 57999999887 5555 777664 899999999999
Q ss_pred CCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCC
Q 006657 128 FENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGV 207 (636)
Q Consensus 128 l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n 207 (636)
++ .+| ..+++|++|++++|++++ +|. +.+ +|++|++++|.+..++. .+++|++|++++|
T Consensus 92 l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~------------~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 92 LI--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE------------LPALLEYINADNN 150 (571)
T ss_dssp CS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC------------CCTTCCEEECCSS
T ss_pred Cc--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC------------cCccccEEeCCCC
Confidence 99 477 568999999999999996 777 765 99999999998876421 5688999999999
Q ss_pred CCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC-------cEEEc
Q 006657 208 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL-------VFLDL 280 (636)
Q Consensus 208 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L-------~~L~L 280 (636)
.+++.+. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+| . +.. +| ++|++
T Consensus 151 ~l~~lp~------~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~-~lp-~-~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 151 QLTMLPE------LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE-SLP-A-VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp CCSCCCC------CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS-SCC-C-CC----------CCEEEEC
T ss_pred ccCcCCC------cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC-chh-h-HHH--hhhcccccceEEec
Confidence 9988764 46889999999999885 773 54 88999999999987 676 3 443 66 88888
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCC
Q 006657 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFT 321 (636)
Q Consensus 281 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 321 (636)
++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 888888 5788787888888888888888888888776643
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=182.03 Aligned_cols=177 Identities=21% Similarity=0.247 Sum_probs=145.0
Q ss_pred EEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCC
Q 006657 343 VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM 421 (636)
Q Consensus 343 ~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~ 421 (636)
.+++++|.++ .+|..+ ...++.|++++|++++..| ..|..+++|++|++++|++++..+..|.++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-------- 82 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-------- 82 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT--------
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC--------
Confidence 3444444444 566654 3457899999999997755 45789999999999999999777767766554
Q ss_pred ccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCC
Q 006657 422 ETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRS 501 (636)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 501 (636)
|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++
T Consensus 83 --------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 83 --------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp --------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred --------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 889999999999888888999999999999999999998999999999
Q ss_pred CCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccc-cCCCCCCCCC
Q 006657 502 LESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASC-FAGNNLCGAP 563 (636)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~-~~~n~lc~~~ 563 (636)
|++|+|++|++++..|..+..+++|++|++++|++.|.++..+...++.... +.++..|+.|
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P 193 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP 193 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEES
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCC
Confidence 9999999999999999999999999999999999999998765555444332 3344556554
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=8.8e-20 Score=174.55 Aligned_cols=164 Identities=23% Similarity=0.289 Sum_probs=105.7
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccccc
Q 006657 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194 (636)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 194 (636)
.++|++|++++|.+++. .+..++.+++|++|++++|++++..+..+.++++|++|++++|.+...+.. .+.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~ 97 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG--------VFD 97 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTT
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh--------Hhc
Confidence 35899999999999854 555678899999999999999866666678888888888888877654322 145
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCC
Q 006657 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH 274 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 274 (636)
++++|++|++++|.+++.+. ..+..+++|++|++++|.+++ ++...+..+++|+.|++++|.+.+ .+++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~ 166 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC--------TCPG 166 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC--------CTTT
T ss_pred CccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec--------CCCC
Confidence 66667777777666665532 124455666666666666553 332345555566666666555432 2334
Q ss_pred CcEEEccCCcCcccCCccccCCCC
Q 006657 275 LVFLDLGFNSFGGPIPDGLQNLTS 298 (636)
Q Consensus 275 L~~L~L~~n~l~~~~p~~l~~l~~ 298 (636)
|++|+++.|+++|.+|.+++.++.
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHHHHhCCceeeccCccccC
Confidence 555555555555555555554443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1e-19 Score=188.73 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=77.5
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE-E
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF-L 278 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~-L 278 (636)
++++.++++++.+|. .+ .+++++|+|++|+++ .+|...|.++++|++|+|++|++.+.+++..|.+++++++ +
T Consensus 12 ~~v~C~~~~Lt~iP~---~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS---DL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCT---TC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCc---Cc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 566777777776654 22 346777777777776 4554566777777777777777665566556666666554 4
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccC
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 330 (636)
.+..|+++...|..|..+++|++|++++|++.+..+..+....++..+++.+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 4455666655566666677777777777766654444444444455555543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.2e-20 Score=201.27 Aligned_cols=187 Identities=25% Similarity=0.344 Sum_probs=101.1
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|+.|++++|.+++ +| ..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 55555555555553 44 222 245555555555555 344 234555555555555554 343 332 4555555
Q ss_pred cCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhh
Q 006657 329 RENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408 (636)
Q Consensus 329 ~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 408 (636)
++|+++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +
T Consensus 128 s~N~l~-------------------~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 128 DNNQLT-------------------MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp CSSCCS-------------------CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred CCCcCC-------------------CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence 544444 2343 15566666666666664 444 35566666666666664 443 3
Q ss_pred hhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCC-------CeE
Q 006657 409 NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLAL-------QSL 481 (636)
Q Consensus 409 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L-------~~L 481 (636)
. + +|+.|+|++|+|+ .+|. +.. +| +.|
T Consensus 179 ~--~----------------------------------------~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L 212 (571)
T 3cvr_A 179 P--E----------------------------------------SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFF 212 (571)
T ss_dssp C--T----------------------------------------TCCEEECCSSCCS-SCCC-CC----------CCEEE
T ss_pred h--C----------------------------------------CCCEEECcCCCCC-chhh-HHH--hhhcccccceEE
Confidence 2 1 2566666666666 5555 433 55 666
Q ss_pred eCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCC
Q 006657 482 NLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL 523 (636)
Q Consensus 482 ~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 523 (636)
+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 213 ~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66666666 456656666666666666666666666655543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.8e-19 Score=186.94 Aligned_cols=135 Identities=13% Similarity=0.036 Sum_probs=65.8
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcE-EEcccCCCCCCCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT-LDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
+++++|+|++|+++..+. ..+.++++|++|+|++|++.+.+|...|.++++++. +.++.|+++ .+++..|..+++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECT--TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCH--HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccc
Confidence 345555666555554432 134555556666666555554455444555555443 344445554 3443555555556
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccC-CcCCcccchhhhCCC-CCCEEEccCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRS-NNFISSIPTWLHKFT-RLEYLSLRENRLQ 334 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~L~~n~l~ 334 (636)
++|++++|++++..+..+....++..+++.+ +++....+..|..+. .+++|++++|+++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 6666655555544444444444555555543 333322223333332 3444444444443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=5.2e-20 Score=177.67 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=138.6
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcc
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~ 423 (636)
++++++.++ .+|..+ .++++.|++++|++++..+..|..+++|++|++++|++++..|..|.++++
T Consensus 16 v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~---------- 81 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---------- 81 (220)
T ss_dssp EECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS----------
T ss_pred EEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC----------
Confidence 344444444 666654 368999999999999877778999999999999999999887887776655
Q ss_pred ccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCC
Q 006657 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503 (636)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~ 503 (636)
|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+
T Consensus 82 ------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 82 ------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp ------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 88999999999966666789999999999999999999899999999999
Q ss_pred EEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCcc
Q 006657 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFN 550 (636)
Q Consensus 504 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~ 550 (636)
+|+|++|++++..+..+..+++|++|++++|++.|.++..+...++.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence 99999999998888889999999999999999999887654443333
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.9e-19 Score=172.15 Aligned_cols=83 Identities=30% Similarity=0.287 Sum_probs=33.7
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|++|++++|+++ .+++..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3444444444443 222233344444444444444444333333344444444444444444333333344444444444
Q ss_pred cCcc
Q 006657 329 RENR 332 (636)
Q Consensus 329 ~~n~ 332 (636)
++|+
T Consensus 108 ~~N~ 111 (208)
T 2o6s_A 108 NTNQ 111 (208)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 4433
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5.4e-18 Score=164.62 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=101.6
Q ss_pred CCCCCCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCC
Q 006657 54 ASWSDGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQI 133 (636)
Q Consensus 54 ~~W~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~i 133 (636)
..|.+...|.|.+|.|+.. -.+.+|..+. ++|++|+|++|.+++. .
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~-------------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~ 56 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK-------------------------------RHASVPAGIP--TNAQILYLHDNQITKL-E 56 (229)
T ss_dssp CCCCTTCEEETTEEECTTS-------------------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-C
T ss_pred ccCCCCCEEeCCEeEccCC-------------------------------CcCccCCCCC--CCCCEEEcCCCccCcc-C
Confidence 3455778899999999641 1234454443 7899999999999875 6
Q ss_pred chhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCC
Q 006657 134 PVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTAS 213 (636)
Q Consensus 134 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~ 213 (636)
|..+..+++|++|++++|++....+..+..+++|++|++++|++...+... +..+++|++|++++|.++..|
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~lp 128 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--------FDRLVHLKELFMCCNKLTELP 128 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCSCC
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH--------hCcchhhCeEeccCCcccccC
Confidence 788888999999999999987555566788888888888888776543221 345555555555555555443
Q ss_pred ChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 214 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 214 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
. .+..+++|++|++++|++++ ++...+..+++|+.|++++|.+.
T Consensus 129 ~---~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 129 R---GIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp T---TGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBC
T ss_pred c---ccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCcc
Confidence 2 23444444444444444442 22133444444444444444443
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.3e-18 Score=167.24 Aligned_cols=154 Identities=22% Similarity=0.258 Sum_probs=132.6
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcc
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~ 423 (636)
++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..++.
T Consensus 24 v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~---------- 89 (229)
T 3e6j_A 24 VDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---------- 89 (229)
T ss_dssp EECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------
T ss_pred eEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC----------
Confidence 444444443 677654 378999999999999988999999999999999999997555555555544
Q ss_pred ccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCC
Q 006657 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503 (636)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~ 503 (636)
|++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+
T Consensus 90 ------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 90 ------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT 138 (229)
T ss_dssp ------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCS
T ss_pred ------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCC
Confidence 899999999999777778899999999999999999 8899999999999
Q ss_pred EEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 504 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
+|+|++|++++..+..+..+++|++|++++|++.|.++.
T Consensus 139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 999999999987778899999999999999999998873
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.6e-18 Score=172.21 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=46.5
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccC
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSD 533 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 533 (636)
|+.|++++|++++. ..++.+++|++|++++|++++..| +..+++|+.|++++|++++ +|. +..+++|++|++++
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEE
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcC
Confidence 55555555555533 445566666666666666664433 5666666666666666664 332 56666666666666
Q ss_pred CcCcc
Q 006657 534 NNLTG 538 (636)
Q Consensus 534 N~l~g 538 (636)
|+++.
T Consensus 210 n~i~~ 214 (291)
T 1h6t_A 210 QECLN 214 (291)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 66654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.7e-18 Score=189.73 Aligned_cols=173 Identities=27% Similarity=0.350 Sum_probs=110.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
+..+++|++|++++|.+.. +| .+..+++|++|+|++|++.+..| +..+++|++|+|++|.+...+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---------- 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS---------- 103 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT----------
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh----------
Confidence 4567788888888888773 44 46778888888888888775443 777788888888877765431
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+..+++|++|+|++|.+++.+ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+ +++ +..
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~ 173 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD-IVP--LAG 173 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCC-CGG--GTT
T ss_pred hhccCCCCCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCC-chh--hcc
Confidence 2566777777777777766653 345566666666666666542 245566666666666666653 221 555
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCc
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFIS 311 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 311 (636)
+++|++|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 174 l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66666666666666542 235556666666666665553
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=181.13 Aligned_cols=140 Identities=23% Similarity=0.199 Sum_probs=104.3
Q ss_pred hhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------- 113 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA----------------------------- 113 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-----------------------------
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC-----------------------------
Confidence 444555555555555455566777888888888888887655555555444
Q ss_pred cccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccc---cCCCCCCEEeCCCCCCCccCchh
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV---GAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~---~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
|++|+|++|++++..|..|..+++|++|+|++|++++..+..| ..+++|+.|||++|++++..+..
T Consensus 114 -----------L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 114 -----------LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp -----------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred -----------CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 7888888888887778888899999999999999985444444 56899999999999999777677
Q ss_pred ccCCCC--CCeeeccCCcCcccCCC
Q 006657 520 ISSLTF--LSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 520 l~~l~~--L~~L~ls~N~l~g~ip~ 542 (636)
+..++. ++.|++++|++.|.+..
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEECCHHH
T ss_pred hhhccHhhcceEEecCCCccCCcCc
Confidence 887776 48899999999987753
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.5e-18 Score=163.64 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=128.4
Q ss_pred ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch-hhhhhhhhccccCCCccccccccceeeceEEEEeecccc
Q 006657 367 LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR-CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGREL 445 (636)
Q Consensus 367 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (636)
+.+++++|+++ .+|..+.. ++++|++++|++++..+. .+..++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~--------------------------------- 54 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLP--------------------------------- 54 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCT---------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCC---------------------------------
Confidence 57788888885 66766543 899999999999865554 355444
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
+|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++.+|..+..+++
T Consensus 55 -------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 55 -------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp -------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred -------CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 3889999999999888999999999999999999999888888999999999999999999999999999999
Q ss_pred CCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCCC
Q 006657 526 LSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPL 564 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~ 564 (636)
|++|++++|+++|.++..+...++....+.++ ..|+.|.
T Consensus 128 L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99999999999999987655555555555555 6676553
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.1e-17 Score=168.64 Aligned_cols=172 Identities=25% Similarity=0.317 Sum_probs=100.4
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+... +.
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~----------~~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL----------SS 107 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG----------GG
T ss_pred hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC----------hh
Confidence 456667777777776663 33 35666677777777776664332 66666666666666655432 11
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+.++++|++|++++|.+++. + .+..+++|+.|++++|.+++. ..+..+
T Consensus 108 l~~l~~L~~L~L~~n~i~~~---------------------------~--~l~~l~~L~~L~l~~n~l~~~---~~l~~l 155 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI---------------------------N--GLVHLPQLESLYLGNNKITDI---TVLSRL 155 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC---------------------------G--GGGGCTTCCEEECCSSCCCCC---GGGGGC
T ss_pred hccCCCCCEEECCCCcCCCC---------------------------h--hhcCCCCCCEEEccCCcCCcc---hhhccC
Confidence 44445555555555444443 2 345555566666666655432 345566
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
++|++|++++|++++..| +..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus 156 ~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 666666666666664433 6666667777777766664 33 36666777777777776653
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=4.3e-21 Score=210.91 Aligned_cols=86 Identities=29% Similarity=0.361 Sum_probs=59.5
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccC-chhccCCCCCCeeecc
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRI-PQSISSLTFLSHLNLS 532 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls 532 (636)
|+.|+|++|+++ .+|..++++++|++|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|++|+++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 666777777776 666677777777777777777764 55 5677777777777777777665 6667777777777777
Q ss_pred CCcCcccCCC
Q 006657 533 DNNLTGKIPL 542 (636)
Q Consensus 533 ~N~l~g~ip~ 542 (636)
+|++++..|.
T Consensus 542 ~N~l~~~~~~ 551 (567)
T 1dce_A 542 GNSLCQEEGI 551 (567)
T ss_dssp TSGGGGSSSC
T ss_pred CCcCCCCccH
Confidence 7777665553
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.4e-19 Score=204.92 Aligned_cols=261 Identities=17% Similarity=0.129 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHhhcCCCC-CCCCCCCC--CCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCccee
Q 006657 30 GCIQSERKALLRFKQDLKDP-ANRLASWS--DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIG 106 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~-~~~l~~W~--~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g 106 (636)
+..+.++++|+++..+...+ ...-..|. ....+.|.++.++. +++++++|..+.+..
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~------------------ 187 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE------------------ 187 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc------------------
Confidence 34566889999998877321 22334575 34567899998864 789999998764332
Q ss_pred ecCccccCCCCCCEE-----eCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 107 KINPSLLDLKHLVYL-----DLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L-----~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
++..+.....|+.+ +++.|.+. ..|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+..++
T Consensus 188 -~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp 263 (727)
T 4b8c_D 188 -ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELP 263 (727)
T ss_dssp -------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCC
T ss_pred -chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccC
Confidence 22222222222222 22223332 24555666777777777777766 56666667777777777777665432
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
. .+.++++|++|+|++|.++..|. .+..+++|++|+|++|.++ .+| ..++++++|+.|+|++|.++
T Consensus 264 ~---------~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 264 A---------EIKNLSNLRVLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVT-TLP-WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp G---------GGGGGTTCCEEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCC-CCC-SSTTSCTTCCCEECTTSCCC
T ss_pred h---------hhhCCCCCCEEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCC-ccC-hhhhcCCCccEEeCCCCccC
Confidence 1 15666777777777777775544 4566777888888888776 677 45788888888888888887
Q ss_pred CCCChhhhcCCC-CCcEEEccCCcCcccCCccccCCCCCCEEEccCC--------cCCcccchhhhCCCCCCEEEccCcc
Q 006657 262 NTLVPSWLFGLS-HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN--------NFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 262 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
+.+| ..+..+. .+..+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..++...+++|.
T Consensus 330 ~~~p-~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 330 KQFL-KILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp SHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------------------C
T ss_pred CCCh-HHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence 6555 5554332 1234677888888777653 445555555 3333333444555666667777776
Q ss_pred ccc
Q 006657 333 LQG 335 (636)
Q Consensus 333 l~~ 335 (636)
+.+
T Consensus 403 l~~ 405 (727)
T 4b8c_D 403 LCQ 405 (727)
T ss_dssp CCG
T ss_pred ccc
Confidence 653
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.7e-18 Score=189.79 Aligned_cols=148 Identities=25% Similarity=0.273 Sum_probs=83.2
Q ss_pred CCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEc
Q 006657 225 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304 (636)
Q Consensus 225 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 304 (636)
+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|++|+|++|++++..| +..+++|+.|+|
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 3334444444443222 445566666777766665 232 35666667777777666664433 666666677777
Q ss_pred cCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcccc
Q 006657 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384 (636)
Q Consensus 305 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l 384 (636)
++|.+.+ +| .+..+++|++|+|++|++.+ ++. +. .+++|+.|+|++|.+++. ..+
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-------------------l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l 149 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISD-------------------ING-LV-HLPQLESLYLGNNKITDI--TVL 149 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-------------------CGG-GG-GCTTCSEEECCSSCCCCC--GGG
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-------------------Ccc-cc-CCCccCEEECCCCccCCc--hhh
Confidence 6666654 22 45666666666666666552 221 22 255666666666666543 445
Q ss_pred CCCCCCCEEEccCccCccccc
Q 006657 385 CRLTSLHILDLSHNNFSGTLP 405 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p 405 (636)
..+++|+.|+|++|++++..|
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG
T ss_pred cccCCCCEEECcCCcCCCchh
Confidence 566666666666666654433
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=160.20 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=131.9
Q ss_pred CCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc
Q 006657 299 LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 299 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~ 378 (636)
-+++++++|.++ .+|..+. +.+++|++++|++++. .|...+..+++|+.|++++|.+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~------------------~~~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVL------------------EATGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEE------------------CCCCCGGGCTTCCEEECCSSCCCE
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCcc------------------CchhhhccCCCCCEEECCCCcCCE
Confidence 358888888887 4565443 4567777777777633 232222348999999999999998
Q ss_pred cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEE
Q 006657 379 QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458 (636)
Q Consensus 379 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 458 (636)
..+..|..+++|++|++++|++++..|..|.++++ |++|+
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------------------L~~L~ 111 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES----------------------------------------LKTLM 111 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS----------------------------------------CCEEE
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC----------------------------------------CCEEE
Confidence 88889999999999999999999877776766554 88999
Q ss_pred CcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 459 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+..+
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99999999989999999999999999999999889999999999999999999987654
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.3e-20 Score=207.09 Aligned_cols=202 Identities=21% Similarity=0.209 Sum_probs=143.7
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCc-------------CCcccchhhhCCCCCCEEE-ccCccccccc
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN-------------FISSIPTWLHKFTRLEYLS-LRENRLQGMI 337 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~ 337 (636)
+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 334444444444443 334444444444444443332 4566777788888888887 6666554
Q ss_pred CccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccc
Q 006657 338 SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQ 417 (636)
Q Consensus 338 p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~ 417 (636)
.+..+.+++|.+.+ +| ...|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..++++++
T Consensus 424 --~L~~l~l~~n~i~~-l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~---- 487 (567)
T 1dce_A 424 --DLRSKFLLENSVLK-ME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC---- 487 (567)
T ss_dssp --HHHHHHHHHHHHHH-HH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT----
T ss_pred --hhhhhhhhcccccc-cC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC----
Confidence 22233333333321 11 2368899999999986 676 899999999999999998 78887776655
Q ss_pred cCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC-Cccc
Q 006657 418 ENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI-PENV 496 (636)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~~ 496 (636)
|+.|+|++|++++ +| .++++++|++|+|++|++++.+ |..+
T Consensus 488 ------------------------------------L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 488 ------------------------------------LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp ------------------------------------CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred ------------------------------------CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 8899999999996 67 8999999999999999999887 9999
Q ss_pred cCCCCCCEEeCCCCCCCccCch---hccCCCCCCeeec
Q 006657 497 GAMRSLESIDFSGNLLSGRIPQ---SISSLTFLSHLNL 531 (636)
Q Consensus 497 ~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~l 531 (636)
+.+++|+.|+|++|++++.+|. .+..+++|+.||+
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999977553 2344788998875
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.1e-16 Score=154.20 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=77.7
Q ss_pred CCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCE
Q 006657 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEH 301 (636)
Q Consensus 222 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 301 (636)
+++|++|+|++|++++..| ..+.++++|++|+|++|.++ .+++..|.++++|++|+|++|++++..|..|..+++|++
T Consensus 55 l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp CTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 3444444444444443334 45666677777777777776 555566777777888888888887777777778888888
Q ss_pred EEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 302 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|+|++|++++..+..|..+++|++|++++|++.
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888888776667777888888888888765
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=4.8e-18 Score=192.44 Aligned_cols=190 Identities=18% Similarity=0.195 Sum_probs=119.2
Q ss_pred EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccc
Q 006657 254 DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 254 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 333 (636)
+++.|.+. +++..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|++
T Consensus 207 ~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred ccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 33344442 44477888899999999999987 67777888999999999999988 7888888999999999888887
Q ss_pred ccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhh
Q 006657 334 QGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 334 ~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
+ .+|..++. +++|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+..+..
T Consensus 283 ~-------------------~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 341 (727)
T 4b8c_D 283 T-------------------SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341 (727)
T ss_dssp S-------------------SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred C-------------------ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence 7 56666664 889999999999987 78888999999999999999999999988876543
Q ss_pred hccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCc-------
Q 006657 414 MMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHN------- 486 (636)
Q Consensus 414 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N------- 486 (636)
. ...++|++|.++|.+|.. |+.|++++|
T Consensus 342 ~---------------------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~ 376 (727)
T 4b8c_D 342 T---------------------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREY 376 (727)
T ss_dssp H---------------------------------------HHHHHHHHCCCCCCCCCC----------------------
T ss_pred h---------------------------------------hhHHhhccCcccCcCccc------cceeEeeccccccccc
Confidence 2 223678889888888864 445666666
Q ss_pred -cCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 487 -FLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 487 -~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
.+.+..+..+..+..++...+++|.+.
T Consensus 377 ~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 377 DSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------CCC
T ss_pred CCccccccchhhcccccceeeeeccccc
Confidence 344444444556666677777777765
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=3.8e-17 Score=170.13 Aligned_cols=157 Identities=24% Similarity=0.242 Sum_probs=87.1
Q ss_pred CCCEEEeecCCCCCCCCCcccc-CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEE
Q 006657 224 SLQVLKLSACSLHNSLPELPIA-NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302 (636)
Q Consensus 224 ~L~~L~L~~n~l~~~~p~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 302 (636)
.++.|+|++|++++..+ ..+. ++++|+.|+|++|+++ .+++..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 35555555555553322 3344 5566666666666665 3333555666666666666666655444455666666666
Q ss_pred EccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHH---HhhhcCceEecCCCcCccc
Q 006657 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIG---EKLLRNLILRLRSNKFDGQ 379 (636)
Q Consensus 303 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~---~~~~~L~~L~L~~n~l~~~ 379 (636)
+|++|++++..|..|..+++|++|+|++|+++ .+|..++ ..+++|+.|+|++|++++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------------------SCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCC-------------------eeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 66666666555555666666666666666555 2333221 1255566666666666544
Q ss_pred CccccCCCCC--CCEEEccCccCc
Q 006657 380 IPAELCRLTS--LHILDLSHNNFS 401 (636)
Q Consensus 380 ~p~~l~~l~~--L~~L~Ls~N~l~ 401 (636)
.+..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 3344555554 366777777765
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=6.3e-17 Score=153.20 Aligned_cols=153 Identities=19% Similarity=0.262 Sum_probs=106.8
Q ss_pred cCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhh
Q 006657 138 GFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFL 217 (636)
Q Consensus 138 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 217 (636)
+.+++|++|++++|.+. .+| .+..+++|++|++++|. ++..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~--------------------------------~~~~~---- 82 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH--------------------------------ATNYN---- 82 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC--------------------------------CSCCG----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC--------------------------------CCcch----
Confidence 44556666666666665 444 45555555555555553 33222
Q ss_pred hhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc-CcccCCccccCC
Q 006657 218 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS-FGGPIPDGLQNL 296 (636)
Q Consensus 218 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l 296 (636)
.+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. ++ .+| .+..+
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l 158 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTL 158 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGC
T ss_pred hhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCC
Confidence 35567777777777777776555 567888888888888888875455 778888889999999887 54 455 68888
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 159 ~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 159 PELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 899999999998875 33 6788889999999888875
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=152.87 Aligned_cols=140 Identities=24% Similarity=0.300 Sum_probs=119.3
Q ss_pred ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccc
Q 006657 367 LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446 (636)
Q Consensus 367 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (636)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+.+++.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~--------------------------------- 55 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKH--------------------------------- 55 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTT---------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccC---------------------------------
Confidence 46788888877 5666553 58999999999998 67766665544
Q ss_pred cccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCC
Q 006657 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFL 526 (636)
Q Consensus 447 ~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 526 (636)
|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 56 -------L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 56 -------LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp -------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred -------CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 8899999999998888899999999999999999998888899999999999999999997777789999999
Q ss_pred CeeeccCCcCcccCCCCCccCCcc
Q 006657 527 SHLNLSDNNLTGKIPLGTQLQGFN 550 (636)
Q Consensus 527 ~~L~ls~N~l~g~ip~~~~~~~~~ 550 (636)
++|++++|++.|.+...+...++.
T Consensus 129 ~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 129 SHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp CEEECCSSCEECSGGGHHHHHHHH
T ss_pred cEEEeCCCCeecCCcCHHHHHHHH
Confidence 999999999999887655444443
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.6e-16 Score=150.41 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=113.8
Q ss_pred CCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCC
Q 006657 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299 (636)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 299 (636)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|++++..|..++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~--~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHAT--NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCS--CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCC--cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 34567777777777776 455 4677778888888888654 23 467778888888888888887777788888888
Q ss_pred CEEEccCCcCCcccchhhhCCCCCCEEEccCcc-cccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc
Q 006657 300 EHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR-LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 300 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~ 378 (636)
++|++++|++++..|..+..+++|++|++++|+ ++ .+| .+. .+++|+.|++++|.+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-------------------~~~-~l~-~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-------------------DIM-PLK-TLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-------------------CCG-GGG-GCSSCCEEECTTBCCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-------------------ccH-hhc-CCCCCCEEECCCCCCcC
Confidence 888888888887778888888888888888886 54 344 233 37888888888888875
Q ss_pred cCccccCCCCCCCEEEccCccCcc
Q 006657 379 QIPAELCRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 379 ~~p~~l~~l~~L~~L~Ls~N~l~~ 402 (636)
++ .+..+++|+.|++++|++.+
T Consensus 174 -~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 -YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CT-TGGGCSSCCEEEECBC----
T ss_pred -hH-HhccCCCCCEEEeeCcccCC
Confidence 33 67788899999999998763
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=2.1e-17 Score=163.88 Aligned_cols=82 Identities=27% Similarity=0.353 Sum_probs=55.2
Q ss_pred CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCE
Q 006657 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEY 325 (636)
Q Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 325 (636)
++.+++.++++.|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 34456666777777652 22 3556677777777777776 344 56777777777777777775443 777777777
Q ss_pred EEccCcccc
Q 006657 326 LSLRENRLQ 334 (636)
Q Consensus 326 L~L~~n~l~ 334 (636)
|++++|+++
T Consensus 90 L~L~~N~l~ 98 (263)
T 1xeu_A 90 LSVNRNRLK 98 (263)
T ss_dssp EECCSSCCS
T ss_pred EECCCCccC
Confidence 777777765
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=6.6e-17 Score=160.32 Aligned_cols=170 Identities=19% Similarity=0.243 Sum_probs=91.2
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
++.+++.+++++|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+...+ .+
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~----------~l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS----------PL 81 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG----------GG
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh----------hh
Confidence 35556666777777763 44 4566777777777777776 344 5666677777777766654431 04
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
.++++|++|++++|.+++.+.. .. ++|++|++++|++++ + ..+..++
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~~~----~~-~~L~~L~L~~N~l~~-~---------------------------~~l~~l~ 128 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLNGI----PS-ACLSRLFLDNNELRD-T---------------------------DSLIHLK 128 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCTTC----CC-SSCCEEECCSSCCSB-S---------------------------GGGTTCT
T ss_pred ccCCCCCEEECCCCccCCcCcc----cc-CcccEEEccCCccCC-C---------------------------hhhcCcc
Confidence 4555555555555555544321 11 444444444444442 1 2244455
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
+|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|++|++++|++.+
T Consensus 129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 555555555555432 2 344555555555555555443 334555555555555555543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.1e-16 Score=150.93 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=122.3
Q ss_pred EEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcc-ccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCC
Q 006657 343 VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPA-ELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM 421 (636)
Q Consensus 343 ~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~ 421 (636)
.+++++|.+. .+|..+. .+++.|++++|++++..+. .+..+++|++|++++|++++..|..|.++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------- 79 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------- 79 (192)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT--------
T ss_pred EEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc--------
Confidence 4445555553 6776543 3899999999999876664 4889999999999999999888888776655
Q ss_pred ccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCC
Q 006657 422 ETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRS 501 (636)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 501 (636)
|++|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++
T Consensus 80 --------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 80 --------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp --------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred --------------------------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 889999999999988888999999999999999999999999999999
Q ss_pred CCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 502 LESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
|++|++++|.+.+..+-... ...++...+..+...|..|.
T Consensus 128 L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 128 LTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST
T ss_pred CCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCCh
Confidence 99999999999987652110 01133334555666666664
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.7e-17 Score=167.94 Aligned_cols=220 Identities=13% Similarity=0.018 Sum_probs=128.0
Q ss_pred CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcC----CcccchhhhCCCC
Q 006657 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF----ISSIPTWLHKFTR 322 (636)
Q Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~ 322 (636)
+++|+.|++.. .++ .++..+|.++++|+++++++|.+....+..|.++.++..+....+.. .......|.++..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77777777776 555 56656777777777777777777655566666666666655544211 1112223444444
Q ss_pred CC-EEEccCcccccccCccceEEEccCCCCccccchHHHHh---hhcCceEecCCCcCcccCccccCCCCCCCEEEccCc
Q 006657 323 LE-YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK---LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHN 398 (636)
Q Consensus 323 L~-~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~---~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 398 (636)
|+ .+.+... +.++..+... ..++..+.+.++-...........+++|+.+++++|
T Consensus 178 L~~~i~~~~~---------------------~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 178 LETTIQVGAM---------------------GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp CEEEEEECTT---------------------CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB
T ss_pred cceeEEecCC---------------------CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC
Confidence 44 2332221 1333333321 233444444433111111111112567777777777
Q ss_pred cCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCC
Q 006657 399 NFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLAL 478 (636)
Q Consensus 399 ~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L 478 (636)
+++...+..|.+|++ |+.++|.+| ++..-+..|.++++|
T Consensus 237 ~i~~I~~~aF~~~~~----------------------------------------L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 237 NATTIPDFTFAQKKY----------------------------------------LLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp CCCEECTTTTTTCTT----------------------------------------CCEEECCTT-CCEECTTTTTTCTTC
T ss_pred CcceecHhhhhCCCC----------------------------------------CCEEECCcc-cceehHHHhhCChhc
Confidence 776443445555544 667777776 664555667788888
Q ss_pred C-eEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeec
Q 006657 479 Q-SLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNL 531 (636)
Q Consensus 479 ~-~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 531 (636)
+ .+++.+ .++..-+..|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7 888877 666555677888888888888888887666677888888877753
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.7e-15 Score=139.24 Aligned_cols=134 Identities=20% Similarity=0.206 Sum_probs=110.3
Q ss_pred CceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccc
Q 006657 366 NLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGREL 445 (636)
Q Consensus 366 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (636)
.+.+++++|+++ .+|..+. ++|++|++++|++++..+..+.+++.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~-------------------------------- 53 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQ-------------------------------- 53 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTT--------------------------------
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCccc--------------------------------
Confidence 456777777776 4554433 68999999999988655555555443
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 54 --------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 125 (177)
T 2o6r_A 54 --------LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125 (177)
T ss_dssp --------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred --------ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc
Confidence 889999999999777777899999999999999999877777899999999999999999776667788999
Q ss_pred CCeeeccCCcCcccCCC
Q 006657 526 LSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~ 542 (636)
|++|++++|++.|.+|.
T Consensus 126 L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 126 LQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CCEEECCSSCBCCCHHH
T ss_pred cCEEEecCCCeeccCcc
Confidence 99999999999998874
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=9.3e-16 Score=141.09 Aligned_cols=132 Identities=22% Similarity=0.204 Sum_probs=96.6
Q ss_pred hcCceEecCCCcCc-ccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 364 LRNLILRLRSNKFD-GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 364 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------- 69 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------- 69 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------------------------------
Confidence 56777777777776 66777777777788888887777643 22322
Q ss_pred cccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC-CccccCCCCCCEEeCCCCCCCccCc---h
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI-PENVGAMRSLESIDFSGNLLSGRIP---Q 518 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~L~Ls~N~l~~~~p---~ 518 (636)
+++|++|++++|++++.+|..+.++++|++|++++|++++.. +..+..+++|++|++++|++++..+ .
T Consensus 70 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 141 (168)
T 2ell_A 70 --------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141 (168)
T ss_dssp --------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred --------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH
Confidence 234777888888887767777777888888888888887532 2677888888888888888886555 4
Q ss_pred hccCCCCCCeeeccCCcCc
Q 006657 519 SISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 519 ~l~~l~~L~~L~ls~N~l~ 537 (636)
.+..+++|++|++++|.+.
T Consensus 142 ~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHTTCSSCCEETTEETTSC
T ss_pred HHHhCccCcEecCCCCChh
Confidence 7778888888888888775
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=8.3e-16 Score=138.39 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=108.5
Q ss_pred hhcCceEecCCCcCc-ccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEee
Q 006657 363 LLRNLILRLRSNKFD-GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMK 441 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (636)
.++++.|++++|.++ +.+|..+..+++|++|++++|++++. ..+.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 467899999999998 78888889999999999999998854 33333
Q ss_pred ccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCC-CCccccCCCCCCEEeCCCCCCCccCc---
Q 006657 442 GRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK-IPENVGAMRSLESIDFSGNLLSGRIP--- 517 (636)
Q Consensus 442 ~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~L~Ls~N~l~~~~p--- 517 (636)
+++|++|++++|.+++.+|..+..+++|++|++++|++++. .|..++.+++|++|++++|++++..+
T Consensus 63 ---------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 133 (149)
T 2je0_A 63 ---------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133 (149)
T ss_dssp ---------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHH
T ss_pred ---------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHH
Confidence 34488999999999987888888899999999999999863 44788999999999999999997766
Q ss_pred hhccCCCCCCeeeccC
Q 006657 518 QSISSLTFLSHLNLSD 533 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~ 533 (636)
..+..+++|++||+++
T Consensus 134 ~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 134 NVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHCTTCCEETTBC
T ss_pred HHHHHCCCcccccCCC
Confidence 5788899999999874
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=7.9e-16 Score=141.56 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=110.8
Q ss_pred CccceEEEccCCCCc-cccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhcc
Q 006657 338 SSVLVVFDIGENGFS-GNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN 416 (636)
Q Consensus 338 p~~L~~L~l~~n~l~-g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 416 (636)
|..++.|++++|.++ +.+|..+. .+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--- 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN--- 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT---
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC---
Confidence 334445555555554 56666654 389999999999999865 78899999999999999999878877665554
Q ss_pred ccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccC-CcccccccCCCeEeCCCccCcCCCC--
Q 006657 417 QENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDI-PEEMTNLLALQSLNLSHNFLAGKIP-- 493 (636)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~ip-- 493 (636)
|++|++++|.+++.. +..+..+++|++|++++|++++..+
T Consensus 97 -------------------------------------L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 139 (168)
T 2ell_A 97 -------------------------------------LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139 (168)
T ss_dssp -------------------------------------CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred -------------------------------------CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence 889999999999642 3789999999999999999996655
Q ss_pred -ccccCCCCCCEEeCCCCCCCccCch
Q 006657 494 -ENVGAMRSLESIDFSGNLLSGRIPQ 518 (636)
Q Consensus 494 -~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (636)
..+..+++|++|++++|.+. .+|+
T Consensus 140 ~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp HHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred HHHHHhCccCcEecCCCCChh-hccc
Confidence 47899999999999999988 4554
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.4e-15 Score=156.12 Aligned_cols=219 Identities=12% Similarity=0.077 Sum_probs=142.0
Q ss_pred CCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc----CcccCCccccCCC
Q 006657 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS----FGGPIPDGLQNLT 297 (636)
Q Consensus 222 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~ 297 (636)
+++|+.+++.+ .++ .++...|.++++|+.|+++.|.+. .+++.+|.++.++.++....+. ....-...|.++.
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 45555555555 444 344456777777777777777765 5555677776666666655421 1222233455666
Q ss_pred CCC-EEEccCCcCCcccchhhh----CCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecC
Q 006657 298 SLE-HLDLRSNNFISSIPTWLH----KFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLR 372 (636)
Q Consensus 298 ~L~-~L~L~~n~l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~ 372 (636)
.|+ .+.+... +.++..+. ...+++.+.+.++-.. .-...+...+++|+.++++
T Consensus 177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~-------------------~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDN-------------------ADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCH-------------------HHHHHHHHHCTTCCEEECT
T ss_pred ccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecH-------------------HHHHHHHHhcCCCeEEECC
Confidence 666 4555432 22333222 2344555555443111 1122333347889999999
Q ss_pred CCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccc
Q 006657 373 SNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLK 452 (636)
Q Consensus 373 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (636)
+|+++..-+..|..+++|+.+++.+| ++..-+..|.++++
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~--------------------------------------- 274 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR--------------------------------------- 274 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT---------------------------------------
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh---------------------------------------
Confidence 98888666678899999999999887 66444556766665
Q ss_pred ccc-EEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeC
Q 006657 453 LVR-CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDF 507 (636)
Q Consensus 453 ~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~L 507 (636)
|+ .+++.+ +++..-+..|.+|++|+.+++++|+++..-+..|.++++|+.++.
T Consensus 275 -L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 275 -LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 67 788887 777566788999999999999999999777778999999998864
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.6e-14 Score=129.81 Aligned_cols=108 Identities=21% Similarity=0.179 Sum_probs=54.4
Q ss_pred CCCCEEEeecCCCC-CCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCE
Q 006657 223 PSLQVLKLSACSLH-NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEH 301 (636)
Q Consensus 223 ~~L~~L~L~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 301 (636)
++|+.|++++|.++ +.+| ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45555555555555 4455 3445555555555555555432 34445555555555555555444444444555555
Q ss_pred EEccCCcCCcc-cchhhhCCCCCCEEEccCcccc
Q 006657 302 LDLRSNNFISS-IPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 302 L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|++++|++++. .+..+..+++|++|++++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 55555555432 2244444555555555554444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.4e-13 Score=127.65 Aligned_cols=130 Identities=22% Similarity=0.246 Sum_probs=98.5
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
.+.++++++.++..|. ...++|++|++++|++++ ++...+.++++|++|++++|.++ .+++..+..+++|++|
T Consensus 9 ~~~l~~~~~~l~~~p~-----~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-----GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSCCT-----TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCccCCC-----CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEE
Confidence 3566666666665542 123678888888888774 44356778888888888888887 5555677888889999
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999988887666667888899999999998886666667788888888888888764
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.2e-13 Score=129.87 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=104.2
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD 279 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 279 (636)
+.++++++.++..|. .+ .++|++|++++|.++ .+| ..+.++++|+.|++++|.++ .+++..|.++++|++|+
T Consensus 13 ~~l~~~~~~l~~ip~---~~--~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK---GI--PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCS---CC--CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCC---CC--CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEE
Confidence 466777777766653 11 357888888888887 677 67888999999999999998 45557889999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 280 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999887888999999999999999998766667888999999999998876
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=7.1e-14 Score=128.62 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=83.9
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
.+++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 38899999999998889999999999999999999998777778999999999999999998777789999999999999
Q ss_pred CCcCcccCCC
Q 006657 533 DNNLTGKIPL 542 (636)
Q Consensus 533 ~N~l~g~ip~ 542 (636)
+|+++|.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999998874
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=8.1e-16 Score=145.62 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=110.2
Q ss_pred hhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEcc
Q 006657 317 LHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLS 396 (636)
Q Consensus 317 l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 396 (636)
+.....++.++++.+.+.|.+| .+. .+|..+.. +++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~-----------~l~-~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIP-----------PIE-KMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLG 78 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCT-----------TCC-CCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEE
T ss_pred HHhcccccCcchheeEeccccC-----------cHh-hhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECC
Confidence 4445566666666666654332 111 34556654 7888888888888876 56 77777888888888
Q ss_pred CccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCccccccc
Q 006657 397 HNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLL 476 (636)
Q Consensus 397 ~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~ 476 (636)
+|+++ .+|..+..+++ |++|++++|++++ +| .+..++
T Consensus 79 ~n~l~-~l~~~~~~~~~----------------------------------------L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 79 RNLIK-KIENLDAVADT----------------------------------------LEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp EEEEC-SCSSHHHHHHH----------------------------------------CSEEEEEEEECCC-HH-HHHHHH
T ss_pred CCCcc-cccchhhcCCc----------------------------------------CCEEECcCCcCCc-CC-ccccCC
Confidence 88877 56655544443 7778888888875 44 577788
Q ss_pred CCCeEeCCCccCcCCCC-ccccCCCCCCEEeCCCCCCCccCchh----------ccCCCCCCeeeccCCcCc
Q 006657 477 ALQSLNLSHNFLAGKIP-ENVGAMRSLESIDFSGNLLSGRIPQS----------ISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 477 ~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 537 (636)
+|++|++++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|| +|+++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888888888874322 35777888888888888887665542 67777888776 56554
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.1e-13 Score=125.88 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=82.5
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
.|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 38899999999999889999999999999999999997666668999999999999999997777679999999999999
Q ss_pred CCcCcccCCC
Q 006657 533 DNNLTGKIPL 542 (636)
Q Consensus 533 ~N~l~g~ip~ 542 (636)
+|++.+.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999987763
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.7e-13 Score=126.94 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=103.9
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+.++++|++|++++|.++..+.+ ....++|++|++++|.+++. ..+..+++|++|++++|.++ .+++..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~---~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred cCCcCCceEEEeeCCCCchhHHh---hhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 55667777777777777766431 22234888888888888753 36888899999999999997 5564667889
Q ss_pred CCCcEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCcccch----hhhCCCCCCEEEccCcccc
Q 006657 273 SHLVFLDLGFNSFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPT----WLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~ 334 (636)
++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|. .+..+++|++|++++|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999996 5665 7888999999999999987 4455 4888999999999988765
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=7.7e-14 Score=129.26 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=96.3
Q ss_pred hhcCceEecCCCcCcccCccccCCC-CCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEee
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRL-TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMK 441 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (636)
+.+|+.|++++|+++. +|. +..+ ++|++|++++|++++. ..+..
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~------------------------------- 62 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPL------------------------------- 62 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCC-------------------------------
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--ccccc-------------------------------
Confidence 5677788888888773 444 4444 4888888888888743 22322
Q ss_pred ccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCc--cccCCCCCCEEeCCCCCCCccCchh
Q 006657 442 GRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPE--NVGAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 442 ~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|.++ .+|..
T Consensus 63 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~ 131 (176)
T 1a9n_A 63 ---------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHY 131 (176)
T ss_dssp ---------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTH
T ss_pred ---------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhH
Confidence 334788888888888554455588888999999999886 5665 7888888999999999887 45654
Q ss_pred ----ccCCCCCCeeeccCCcCcc
Q 006657 520 ----ISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 520 ----l~~l~~L~~L~ls~N~l~g 538 (636)
+..+++|++||+++|....
T Consensus 132 ~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 132 RLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHHHHCTTCSEETTEECCHHH
T ss_pred HHHHHHHCCccceeCCCcCCHHH
Confidence 7888899999999887653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.8e-15 Score=143.22 Aligned_cols=64 Identities=28% Similarity=0.324 Sum_probs=34.8
Q ss_pred hcCCCCCcEEEccCCcCcccCCc------cccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 269 LFGLSHLVFLDLGFNSFGGPIPD------GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 34445566666666666655554 45555555555555555553 33 4555555555555555444
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=4.3e-12 Score=133.18 Aligned_cols=241 Identities=10% Similarity=0.099 Sum_probs=142.1
Q ss_pred CCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEE
Q 006657 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLD 303 (636)
Q Consensus 224 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 303 (636)
+|+.+.+..+ ++ .++...|.++ +|+.+.+.. .++ .+...+|.++++|+.+++++|+++..-...|. .++|+.+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence 4555555544 32 3443455553 566666654 343 44446666777777777776666643333343 46777777
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccc
Q 006657 304 LRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE 383 (636)
Q Consensus 304 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~ 383 (636)
+..+ ++.....+|.++++|+.+++..+ ++ .++...+.. .+|+.+.+ .+.++..-..+
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-------------------~I~~~aF~~-~~L~~i~l-p~~i~~I~~~a 266 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-------------------TIGQEAFRE-SGITTVKL-PNGVTNIASRA 266 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CC-------------------EECTTTTTT-CCCSEEEE-ETTCCEECTTT
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-cc-------------------Ccccccccc-CCccEEEe-CCCccEEChhH
Confidence 7643 55444566667777777766553 22 222222221 45666666 33444344566
Q ss_pred cCCCCCCCEEEccCccCc-----cccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEE
Q 006657 384 LCRLTSLHILDLSHNNFS-----GTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458 (636)
Q Consensus 384 l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 458 (636)
|..+++|+.+++.+|.+. ...+..|.+|++ |+.++
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~----------------------------------------L~~l~ 306 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK----------------------------------------LARFE 306 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT----------------------------------------CCEEC
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc----------------------------------------CCeEE
Confidence 777778888877776654 122233444333 66677
Q ss_pred CcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCC-CCCeeeccCCcC
Q 006657 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT-FLSHLNLSDNNL 536 (636)
Q Consensus 459 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l 536 (636)
|. +.++..-...|.+|++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus 307 l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 307 IP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred eC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 76 3465445567777888888888554 554556677777 888888888877766666666663 667777766654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=1.2e-11 Score=129.71 Aligned_cols=220 Identities=11% Similarity=0.058 Sum_probs=125.9
Q ss_pred CCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEE
Q 006657 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLD 303 (636)
Q Consensus 224 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 303 (636)
+|+.+.+.. .+. .++...|.++++|+.++++.|.++ .++...|. ..+|+.+.+..+ ++..-...|.++++|+.++
T Consensus 158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 455555543 333 333345556666666666666554 44444444 355666666533 4434444555666666666
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCc-----c
Q 006657 304 LRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD-----G 378 (636)
Q Consensus 304 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~-----~ 378 (636)
+..+ ++.....+|.+ .+|+.+.+.+ .++ .++...+..+.+|+.+.+.+|.+. .
T Consensus 233 l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-------------------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 233 IPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-------------------NIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp CCTT-CCEECTTTTTT-CCCSEEEEET-TCC-------------------EECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred cCCC-ccCcccccccc-CCccEEEeCC-Ccc-------------------EEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 6543 33333344444 4565555522 222 222222223556666666555443 2
Q ss_pred cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEE
Q 006657 379 QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458 (636)
Q Consensus 379 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 458 (636)
.-+..|..+++|+.+++.+ .++..-...|.+|++ |+.++
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~----------------------------------------L~~l~ 329 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK----------------------------------------VTQLT 329 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS----------------------------------------CCEEE
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC----------------------------------------ccEEE
Confidence 3345677888888888873 455333445555544 66777
Q ss_pred CcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC-CCCEEeCCCCCCC
Q 006657 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR-SLESIDFSGNLLS 513 (636)
Q Consensus 459 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~-~L~~L~Ls~N~l~ 513 (636)
|.+| ++..-+..|.++ +|+.+++++|.+....+..|..++ .++.|.+..+.+.
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7544 554556678888 899999988888766666677774 6788887776543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.6e-12 Score=118.05 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=92.3
Q ss_pred cCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccc
Q 006657 365 RNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRE 444 (636)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (636)
..+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~------------------------------- 55 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQ------------------------------- 55 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT-------------------------------
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCccc-------------------------------
Confidence 3467888888887 4676553 78999999999999877877776655
Q ss_pred cccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 445 LAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 445 ~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+....+
T Consensus 56 ---------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 56 ---------LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ---------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ---------CCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7899999999997777778999999999999999997777789999999999999999986543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=5.8e-12 Score=116.18 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=89.1
Q ss_pred ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccc
Q 006657 367 LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446 (636)
Q Consensus 367 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (636)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~--------------------------------- 58 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN--------------------------------- 58 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT---------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcC---------------------------------
Confidence 56788888875 6677664 78999999999999877877766655
Q ss_pred cccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCcc
Q 006657 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515 (636)
Q Consensus 447 ~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~ 515 (636)
|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+...
T Consensus 59 -------L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 59 -------LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp -------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred -------CCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 78999999999976666789999999999999999976666699999999999999999854
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=2.8e-11 Score=127.19 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=37.3
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
++.++++|+.+.+..+ ++.. -...|.++++|+.+++..+ ++..-...|.++.+|+.+.+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 5667778888887643 4421 1345677777887777654 3323344566777777665554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=3.4e-13 Score=140.19 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=38.9
Q ss_pred cccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 453 LVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
.|++|||++|.+++. ++..+...++|++|+|++|.+++. ++..+...++|++|||++|.++......+
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 366666666666542 234445556677777777766542 22333445667777777777665444433
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=2.5e-12 Score=132.77 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=81.7
Q ss_pred ccEEECcC-CccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 454 VRCMDLSG-NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 454 L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
|+.|+|++ |+|++..+..|+++++|++|+|++|+|++..|..|.++++|++|||++|+|++..+..+..++ |++|+++
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence 89999996 999988888999999999999999999999999999999999999999999977777776666 9999999
Q ss_pred CCcCcccCCCCC
Q 006657 533 DNNLTGKIPLGT 544 (636)
Q Consensus 533 ~N~l~g~ip~~~ 544 (636)
+|++.|.++..+
T Consensus 112 ~N~~~c~c~l~~ 123 (347)
T 2ifg_A 112 GNPLHCSCALRW 123 (347)
T ss_dssp SSCCCCCGGGHH
T ss_pred CCCccCCCccHH
Confidence 999999877543
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=1.5e-10 Score=121.71 Aligned_cols=312 Identities=12% Similarity=0.040 Sum_probs=164.7
Q ss_pred hhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCC
Q 006657 135 VFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD 214 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~ 214 (636)
..|.++.+|+.+.+..+ ++..-..+|.++++|+.+++..+ +..++. ..+.++++|+.+.+..+ +.....
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGR--------CTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT--------TTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccc--------hhhcccccchhhcccCc-eeeecc
Confidence 35677888999988744 55444567888889998888754 333221 12566677766655432 221111
Q ss_pred hhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCcccc
Q 006657 215 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294 (636)
Q Consensus 215 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 294 (636)
. .+..+..++....... . .+....|.++++|+.+.+..+.. .+....|.++.+|+.+.+..+ ++..-...+.
T Consensus 134 ~--aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 134 E--AFKGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFA 205 (394)
T ss_dssp T--TTTTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred e--eeecccccccccCccc--c-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhc
Confidence 0 2222222222111111 1 22224566666666666654432 344455666666666666554 3323334455
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCC
Q 006657 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSN 374 (636)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n 374 (636)
++..|+.+.+..+... +........+|+.+.+.... + .+....+..+..++.+.+..+
T Consensus 206 ~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-------------------~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 206 ECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-------------------ELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-------------------EECSSTTTTCSSCCEEEECCT
T ss_pred cccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-------------------ecccccccccccceeEEcCCC
Confidence 5666666555544321 11222233455555443221 0 111111112444555555444
Q ss_pred cCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccc
Q 006657 375 KFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLV 454 (636)
Q Consensus 375 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 454 (636)
... .....|..+..++.+....+.+. ...+. .+..|
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~----------------------------------------~~~~L 299 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFY----------------------------------------GCSSL 299 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTT----------------------------------------TCTTC
T ss_pred cce-eeccccccccccceeccCceeec---ccccc----------------------------------------ccccc
Confidence 322 22334445555555544433211 11222 23346
Q ss_pred cEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 455 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
+.+.+.++ ++..-...|.++.+|+.+++..+ ++..-..+|.++++|+.+++..| ++..-...|.++.+|+.+++..+
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 66777554 55344567888888888888654 65444667888888999988876 66556677888888988888654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=1.9e-12 Score=134.54 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=98.2
Q ss_pred hcCceEecCCCcCcccCcccc-CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 364 LRNLILRLRSNKFDGQIPAEL-CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 364 ~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
.+|+.|+|++|.++......+ ..+++|+.|+|++|+++......+...-.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~----------------------------- 151 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL----------------------------- 151 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH-----------------------------
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH-----------------------------
Confidence 467777777777654322222 23456788888888877544444332110
Q ss_pred cccccccccccccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCCCCc
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNLLSG 514 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~~ 514 (636)
...+.|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.++.
T Consensus 152 ------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 ------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp ------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred ------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 0123488899999988753 444557789999999999999853 35567778899999999999986
Q ss_pred c----CchhccCCCCCCeeeccCCcCcc
Q 006657 515 R----IPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 515 ~----~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
. ++..+...++|++||+++|+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3 44556667899999999999875
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=3.9e-11 Score=123.80 Aligned_cols=132 Identities=19% Similarity=0.152 Sum_probs=91.8
Q ss_pred eEecCCC-cCcccCccccCCCCCCCEEEccC-ccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccc
Q 006657 368 ILRLRSN-KFDGQIPAELCRLTSLHILDLSH-NNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGREL 445 (636)
Q Consensus 368 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (636)
.++.+++ +++ .+|. +..+++|+.|+|++ |++++..|..|.++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~-------------------------------- 57 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGE-------------------------------- 57 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCC--------------------------------
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccC--------------------------------
Confidence 4566776 676 4777 88888889999986 8888766666665544
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc-hhccCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP-QSISSLT 524 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~ 524 (636)
|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..++ |+.|+|++|.+...-. ..|..+.
T Consensus 58 --------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 58 --------LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE 128 (347)
T ss_dssp --------CSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred --------CCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence 78889999999888888888899999999999999866555566555 9999999998874322 1122222
Q ss_pred CCCeeeccCCcCcccCCC
Q 006657 525 FLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 525 ~L~~L~ls~N~l~g~ip~ 542 (636)
......+..++++|..|.
T Consensus 129 ~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 129 EEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp HTTCSSCGGGCCCCSSSS
T ss_pred HhCcccccccCCCCCCCh
Confidence 222333444555555443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.95 E-value=4.3e-08 Score=102.75 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=22.8
Q ss_pred cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 470 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
.+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+.....|+.+.+..|
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 34445555555555332 332223344455555555555443221 23334444444444433
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.89 E-value=9.6e-08 Score=100.09 Aligned_cols=316 Identities=8% Similarity=0.052 Sum_probs=161.7
Q ss_pred cccCCC-CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCc---cCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 111 SLLDLK-HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAE---LTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 111 ~l~~l~-~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
++.+++ .|+.+.+..+ ++.. -...|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ +..+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~---- 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS---- 130 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT----
T ss_pred hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh----
Confidence 455553 4777777644 3321 23457778888888887653 44333456777777777766543 222211
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
..+.++.+|+.+.+..+ ...... ..+..+.+|+.+.+..+ ++ .+....|.+ ..|+.+.+..+.. .+..
T Consensus 131 ----~aF~~c~~L~~i~lp~~-~~~I~~--~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~~--~i~~ 198 (394)
T 4gt6_A 131 ----EAFHHCEELDTVTIPEG-VTSVAD--GMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKVT--RIGT 198 (394)
T ss_dssp ----TTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTCC--EECT
T ss_pred ----hhhhhhcccccccccce-eeeecc--cceecccccccccccce-ee-Eeccccccc-cceeEEEECCccc--cccc
Confidence 12566777777777533 222211 13455666777766543 22 233233433 4566666654432 2233
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCcc--------------ccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDG--------------LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~--------------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
.+|.++.+++......+..... ... +.....+..+.+.. .++.....+|.++.+|+.+.+..+.
T Consensus 199 ~af~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYPAI-DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSCBS-SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC
T ss_pred chhhhccccceecccccccccc-cceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc
Confidence 5566666666665554433211 100 11122333333322 1222223455666666666654332
Q ss_pred cccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhh
Q 006657 333 LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLT 412 (636)
Q Consensus 333 l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 412 (636)
. .+....+..+..|+.+.+. +.++..-...|.++.+|+.+++..+ ++..-...|.+|+
T Consensus 277 ~--------------------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 277 V--------------------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp C--------------------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred c--------------------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 1 1222222235666666664 3344333455667777777777543 4322334455544
Q ss_pred hhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC
Q 006657 413 AMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI 492 (636)
Q Consensus 413 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i 492 (636)
+ |+.+.+..+ ++..-..+|.+|++|+.+++.++....
T Consensus 335 ~----------------------------------------L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-- 371 (394)
T 4gt6_A 335 Q----------------------------------------LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-- 371 (394)
T ss_dssp T----------------------------------------CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--
T ss_pred C----------------------------------------CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--
Confidence 4 777778544 654445678999999999999886542
Q ss_pred CccccCCCCCCEEeCCCCCCC
Q 006657 493 PENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 493 p~~~~~l~~L~~L~Ls~N~l~ 513 (636)
..+....+|+.+.+..|.+.
T Consensus 372 -~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 372 -NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp -HTCBCCCCC-----------
T ss_pred -hhhhccCCCCEEEeCCCCEE
Confidence 35677788999888777653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=2.1e-09 Score=110.71 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=6.7
Q ss_pred CCCCcEEEcccCCC
Q 006657 247 FSSLYTLDLSYNEF 260 (636)
Q Consensus 247 l~~L~~L~Ls~n~l 260 (636)
+++|++|+|++|.+
T Consensus 251 ~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 251 FPNLKWLGIVDAEE 264 (362)
T ss_dssp CTTCCEEEEESCTT
T ss_pred CCCcCEEeCCCCCC
Confidence 34445555544444
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=2.9e-08 Score=102.11 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=43.4
Q ss_pred cceEEEccCCCCccccchHHHH--hhhcCceEecCCCcCccc----CccccCCCCCCCEEEccCccCcccc
Q 006657 340 VLVVFDIGENGFSGNIPAWIGE--KLLRNLILRLRSNKFDGQ----IPAELCRLTSLHILDLSHNNFSGTL 404 (636)
Q Consensus 340 ~L~~L~l~~n~l~g~ip~~~~~--~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~ 404 (636)
+|+.|++.+|.+.+..+..+.. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 4555555555555444444432 367899999999988863 3444456789999999999887443
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=1.6e-05 Score=82.45 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=35.9
Q ss_pred cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 470 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
..|.++++|+.+.+.++.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 44556666666666666555444455666666666666543 443334556666666666554
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=1e-05 Score=83.96 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=23.7
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCC
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls 508 (636)
+|+.+++.++.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 3444444444444333344444455555544332 332223344444444444443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=6.7e-08 Score=89.69 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=53.5
Q ss_pred cccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeC--CCCCCCcc----Cch
Q 006657 453 LVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDF--SGNLLSGR----IPQ 518 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~L--s~N~l~~~----~p~ 518 (636)
.|++|+|++|.++.. +...+...++|++|+|++|.+++. +...+...++|++|+| ++|.+... +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 366667776666542 223344456677777777777643 3445566677777777 67777653 334
Q ss_pred hccCCCCCCeeeccCCcCc
Q 006657 519 SISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 519 ~l~~l~~L~~L~ls~N~l~ 537 (636)
.+...++|++|++++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 4555677888888888764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.3e-08 Score=94.53 Aligned_cols=103 Identities=13% Similarity=0.034 Sum_probs=58.2
Q ss_pred eeecCccccCCCCCCEEeCCCC-CCCCC---CCchhhcCCCCCCEEEccCCccCCC----CCccCcCCCCCCeEeccCCC
Q 006657 105 IGKINPSLLDLKHLVYLDLSNN-NFENN---QIPVFLGFMGSLRHIDLSRAELTGM----IPHQLGNLFNLQYLDLSIDT 176 (636)
Q Consensus 105 ~g~i~~~l~~l~~L~~L~Ls~n-~l~~~---~ip~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~ 176 (636)
...+...+...+.|++|+|++| .+... .+...+...++|++|+|++|.+... +...+...++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3344555677888888888888 77642 2344556667778888887777643 22334445666777777665
Q ss_pred CCCcccccccccccccccCCCCCcEEEc--cCCCCCC
Q 006657 177 HNPISFSFLYLENFSWLSGLSLLKHLDL--TGVDLST 211 (636)
Q Consensus 177 ~~~~~~~~~~~~~l~~l~~l~~L~~L~L--s~n~l~~ 211 (636)
+.......+ ...+...++|++|+| ++|.++.
T Consensus 105 i~~~g~~~l----~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 105 ISGSGILAL----VEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCHHHHHHH----HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CCHHHHHHH----HHHHHhCCCceEEEecCCCCCCCH
Confidence 543211110 112444455555555 4455443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=3.3e-07 Score=89.53 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=34.4
Q ss_pred cccccEEECcCCccCc--cCCcccccccCCCeEeCCCccCcCCCCccccCCC--CCCEEeCCCCCCCccCc
Q 006657 451 LKLVRCMDLSGNNLSG--DIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--SLESIDFSGNLLSGRIP 517 (636)
Q Consensus 451 ~~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~L~Ls~N~l~~~~p 517 (636)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3445666666666655 3444555566666666666666543 2223232 55555555555555443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=1.4e-07 Score=92.17 Aligned_cols=84 Identities=27% Similarity=0.296 Sum_probs=65.7
Q ss_pred EECcCCccC---ccCCcccccccCCCeEeCCCccCcC--CCCccccCCCCCCEEeCCCCCCCccCchhccCCC--CCCee
Q 006657 457 MDLSGNNLS---GDIPEEMTNLLALQSLNLSHNFLAG--KIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT--FLSHL 529 (636)
Q Consensus 457 L~Ls~N~l~---g~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 529 (636)
++++.|... +.++....++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777432 2222223578999999999999998 5667778999999999999999975 3344454 99999
Q ss_pred eccCCcCcccCCC
Q 006657 530 NLSDNNLTGKIPL 542 (636)
Q Consensus 530 ~ls~N~l~g~ip~ 542 (636)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998874
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=2.9e-06 Score=76.82 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=69.2
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCcc-CcCCCCccccCC----CCCCEEeCCCCC-CCccCchhccCCCCC
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNF-LAGKIPENVGAM----RSLESIDFSGNL-LSGRIPQSISSLTFL 526 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 526 (636)
.|+.||++++.++..--..+..+++|+.|+|++|. +++.--..++.+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 48999999999987767778899999999999995 776544556654 479999999985 876655668889999
Q ss_pred CeeeccCCc
Q 006657 527 SHLNLSDNN 535 (636)
Q Consensus 527 ~~L~ls~N~ 535 (636)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=1.6e-05 Score=71.87 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc-CcccCCccccCC----CCCCEEEccCCc-CCcccchhhhCCCC
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS-FGGPIPDGLQNL----TSLEHLDLRSNN-FISSIPTWLHKFTR 322 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 322 (636)
.|+.||++++.++.... ..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56666666666654333 445667777777777764 543322334443 367888887764 66554556677788
Q ss_pred CCEEEccCcc
Q 006657 323 LEYLSLRENR 332 (636)
Q Consensus 323 L~~L~L~~n~ 332 (636)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887775
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.57 E-value=6e-05 Score=64.98 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=51.0
Q ss_pred eEeCCCccCc-CCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCc
Q 006657 480 SLNLSHNFLA-GKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGF 549 (636)
Q Consensus 480 ~L~Ls~N~l~-~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~ 549 (636)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|++.+.+...+...++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl 80 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWL 80 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHH
Confidence 6777777775 35665443 46889999999998776777888999999999999999887654444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.88 E-value=0.00048 Score=63.46 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=53.9
Q ss_pred cccEEECcCCccCccC----CcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCC---CCc----cCc
Q 006657 453 LVRCMDLSGNNLSGDI----PEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNL---LSG----RIP 517 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~----p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~---l~~----~~p 517 (636)
.|+.|+|++|+++..- .+.+..-+.|++|+|++|++++. +-+.+..-+.|++|+|++|. +.. .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 3677777777776432 23344557788888888887643 23344555678888888653 332 244
Q ss_pred hhccCCCCCCeeeccCCcC
Q 006657 518 QSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l 536 (636)
..+..-+.|++|++++|..
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 5566667888888887764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.65 E-value=0.00029 Score=64.96 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=42.3
Q ss_pred cCccccCCCCCCEEeCCCC-CCCCC---CCchhhcCCCCCCEEEccCCccCCCCCcc----CcCCCCCCeEeccCCCCC
Q 006657 108 INPSLLDLKHLVYLDLSNN-NFENN---QIPVFLGFMGSLRHIDLSRAELTGMIPHQ----LGNLFNLQYLDLSIDTHN 178 (636)
Q Consensus 108 i~~~l~~l~~L~~L~Ls~n-~l~~~---~ip~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~~~ 178 (636)
+...+.+-+.|++|+|++| .+... .+-+.+..-+.|++|+|++|++.+.-... +..-+.|++|+|+.|.+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334456678888888875 66432 13344556677777777777776432222 334456666666666553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0071 Score=51.79 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=47.5
Q ss_pred cEEECcCCccC-ccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 455 RCMDLSGNNLS-GDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 455 ~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
..++-+++.++ ..+|..+ -++|++|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 4667544 247999999999999776777899999999999999885
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.14 E-value=3.7 Score=27.07 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=5.3
Q ss_pred Hhhhheeccchh
Q 006657 609 IGPLLINRRWRY 620 (636)
Q Consensus 609 ~~~~~~~~~~~~ 620 (636)
+++++|.+|++.
T Consensus 29 ~~~~~~~RRr~~ 40 (44)
T 2ks1_B 29 LGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHhhhhHh
Confidence 334445454443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=42.73 E-value=5.6 Score=26.17 Aligned_cols=12 Identities=25% Similarity=0.030 Sum_probs=5.4
Q ss_pred hhhheeccchhh
Q 006657 610 GPLLINRRWRYK 621 (636)
Q Consensus 610 ~~~~~~~~~~~~ 621 (636)
++++|.||++.+
T Consensus 29 ~~~~~~RRRr~~ 40 (44)
T 2l2t_A 29 TFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHhhhhhhh
Confidence 334455544443
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=40.59 E-value=9.4 Score=24.25 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=9.6
Q ss_pred EEeehhhHHHHHHHHHhhhh
Q 006657 594 YVSTAFGFVVGFWCVIGPLL 613 (636)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~ 613 (636)
+.+++++.++++.++++..+
T Consensus 13 IAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHH
Confidence 44455555555544444333
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=37.36 E-value=3.7 Score=27.01 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=4.3
Q ss_pred hhhheeccch
Q 006657 610 GPLLINRRWR 619 (636)
Q Consensus 610 ~~~~~~~~~~ 619 (636)
++.+|.||++
T Consensus 30 ~~~~~~RRR~ 39 (44)
T 2jwa_A 30 VFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHC
T ss_pred HHHhheehhh
Confidence 3344444443
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.08 E-value=70 Score=25.09 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=17.6
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEcc
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR 305 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 305 (636)
.+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44445555555555443 222333344555555555554
No 170
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=25.83 E-value=22 Score=21.58 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHhhhheeccc
Q 006657 598 AFGFVVGFWCVIGPLLINRRW 618 (636)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~ 618 (636)
++|.+|.+.++.+.++||+-+
T Consensus 13 i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 13 IAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCceeEEEccc
Confidence 344554454455556665543
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.44 E-value=1.7e+02 Score=22.81 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=24.0
Q ss_pred cCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCC
Q 006657 464 LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509 (636)
Q Consensus 464 l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~ 509 (636)
++..-...|.++++|+.+.+-.+ ++..-...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445666666666666543 3323344556666666665554
No 172
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.75 E-value=22 Score=25.38 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=9.2
Q ss_pred ehhhHHHHHHHHHhhhhe
Q 006657 597 TAFGFVVGFWCVIGPLLI 614 (636)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~ 614 (636)
+++|.+++++++++..+|
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 455555555555544433
No 173
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=24.88 E-value=23 Score=22.38 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=4.8
Q ss_pred hhheeccchhhh
Q 006657 611 PLLINRRWRYKY 622 (636)
Q Consensus 611 ~~~~~~~~~~~~ 622 (636)
++++.++.+.||
T Consensus 27 iLi~~w~qKPrY 38 (39)
T 2l6w_A 27 ILIMLWQKKPRY 38 (39)
Confidence 333444444443
Done!