BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006658
(636 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/513 (44%), Positives = 320/513 (62%), Gaps = 14/513 (2%)
Query: 2 EIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDK 61
E IST+ P+ +D + ELE L+ LF S EES R E+LG+L+ IV++W K+V++ K
Sbjct: 57 EPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQVSLKK 116
Query: 62 GISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETP 121
G E+ E AK+FTFGSYRLGV GP +DID LCVGP + R DFF L +L+ P
Sbjct: 117 GYP-EQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMR-SDFFDDLSDILKVHP 174
Query: 122 LVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQD-SLLHNLDEQTVLS 180
+ + T V DA VPVI F+G+ +DL+YA+L + IPE+L+ L D S L N+DE+++LS
Sbjct: 175 EITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILS 234
Query: 181 LNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240
LNGCRVTD+IL LVPNI NFR LRC++ WA RRGIYSN +GFLGG++WALL AR+CQLY
Sbjct: 235 LNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARICQLY 294
Query: 241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQA-MPHHVWDPRSNQRDRKHLMPIITPS 299
PN+ P+ ++ RFFK++ WKWP P++LC IQ + VW+P+ RD+ HLMPIITP+
Sbjct: 295 PNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK---RDKAHLMPIITPA 351
Query: 300 YPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHI 359
YP NS+YNVS +TL++M+ EF R E+ +IE G+ TW L E FF + Y++I
Sbjct: 352 YPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDC 411
Query: 360 AAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQ----CHY 415
+ N D R+W+GW+ES+LR LI +E YP F+ N K+++ +
Sbjct: 412 YSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAVP-YPKGFTNNLHKANNPDQICTSF 470
Query: 416 FMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVV-WMYSSWK-QGMQIHVSHLRCQDIPDFV 473
FMGL +P + D+ V EF + W+ + M I V +++ + +P FV
Sbjct: 471 FMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFV 530
Query: 474 FPGGVRPPKSLNEKKRKRIEVIESTKLKKSESS 506
G P +K+ E + K KSE+S
Sbjct: 531 KDEGPEEPVKTTKKRSSTGEPSATRKKLKSENS 563
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/601 (36%), Positives = 340/601 (56%), Gaps = 28/601 (4%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS ++P +D I T++L + +F EEE R+ VLG+L+ +VK+WI V+ K +
Sbjct: 25 ISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDVSESKNL 84
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ K+FTFGSYRLGV DIDALCV P + R DFF F L+ +
Sbjct: 85 P-PSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVER-SDFFQSFFEKLKHQDGI 142
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+L V DA VPVIKF+F+G+ +DL++A+L I ++LD DS L +LD + + SLNG
Sbjct: 143 RNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNG 202
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPN FR TLR ++ WAKRRGIYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 203 CRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNA 262
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ LV +FF +F+ W+WPNPV+L + + VWDPR N DR HLMPIITP+YP
Sbjct: 263 AASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 322
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS++T +M EEF++ + +EI GK W L EP +FF +++Y+ + +A
Sbjct: 323 NSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASAST 382
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVL---QCRLYPGDFSENSVKSSSQCHYFMGLG 420
+ +W G VES++R L+ +ER+ L + +PG+ E+ ++ +F+G+
Sbjct: 383 EENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGN-KEHHKDNNYVSMWFLGII 441
Query: 421 RKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSS---WKQGMQIHVSHLRCQDIPDFVFPGG 477
++ V + D+ ++ F V ++ K+GM+I +H++ + + ++
Sbjct: 442 FRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL---- 496
Query: 478 VRPPKSLNEKKRKRI-EVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGPS 536
P + L +KK++ + +V S+ +S+ + S S T++G +
Sbjct: 497 --PAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTPFNS--------- 545
Query: 537 VEPSTSSVSSSTSASSRPQRPAVSIETEDDNATSVSQAQNFNQVGATVAAALATGTISSF 596
P++ S S S + R ++ E + +Q + +GA V + + T + +
Sbjct: 546 --PASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPTV 603
Query: 597 C 597
C
Sbjct: 604 C 604
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/600 (36%), Positives = 333/600 (55%), Gaps = 23/600 (3%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS + P +D I T++L + +F EEE R+ VLG+L+ +VK+WI ++ K +
Sbjct: 25 ISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDISESKNL 84
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ K+FTFGSYRLGV DIDALCV P + R DFF F L+ +
Sbjct: 85 P-PSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVER-SDFFQSFFEKLKHQDGI 142
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+L V DA VPVIKF+F+G+ +DL++A+L I ++LD DS L +LD + + SLNG
Sbjct: 143 RNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNG 202
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPN FR TLR ++ WAKRRGIYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 203 CRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNA 262
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ LV +FF +F+ W+WPNPV+L + + VWDPR N DR HLMPIITP+YP
Sbjct: 263 AASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 322
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS++T +M EEF++ + +EI GK W L EP +FF +++Y+ + +A
Sbjct: 323 NSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASAST 382
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVL---QCRLYPGDFSENSVKSSSQCHYFMGLG 420
+ +W G VES++R L+ +ER+ L + +PG+ E+ ++ +F+G+
Sbjct: 383 EENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGN-KEHHKANNYVSMWFLGII 441
Query: 421 RKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSS---WKQGMQIHVSHLRCQDIPDFVFPGG 477
++ V + D+ ++ F V ++ K GM+I +H++ + + ++
Sbjct: 442 FRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL---- 496
Query: 478 VRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGPSV 537
P + L +KK+ +V S+ +S+ S+ + S T+SG + P
Sbjct: 497 --PAEILQKKKKSLSDVSRSSGGLQSKRSSLDSTCLDSSRDTDSGTPFN-------SPVS 547
Query: 538 EPSTSSVSSSTSASSRPQRPAVSIETEDDNATSVSQAQNFNQVGATVAAALATGTISSFC 597
S+ S T R V++ E + +Q + +GA V + + C
Sbjct: 548 ANKPSNPDSPTGEIERSSAEPVAVVVEKLPSVPPAQGLSIPVIGAKVDPTAKAVSSPAVC 607
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/551 (39%), Positives = 316/551 (57%), Gaps = 16/551 (2%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS + P D + T+ L + L +F EEE R+ VL +L+ +VK+WI+ ++ K +
Sbjct: 26 ISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQRRILVLEKLNNLVKEWIREISESKSL 85
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ I+ K+FTFGSYRLGV DIDALCV P + R DFF + L+ V
Sbjct: 86 P-QSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDR-SDFFTSFYAKLKLQEEV 143
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+DL V +A VPVIK F+G+ +D+L+A+L IPEDLD DSLL NLD + + SLNG
Sbjct: 144 KDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 203
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPNI NFR TLR ++ WAK IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 204 CRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ + LV +FF +F+ W+WPNPV+L + + + VWDPR N DR HLMPIITP+YP
Sbjct: 264 VASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS +T +M EEF++ + EI K W LFE FF +K+Y+ + +A
Sbjct: 324 NSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLASAST 383
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSVKSSSQCHYFMGLG 420
+W G VES++R L+ +E++ L + P F EN + + +GLG
Sbjct: 384 EKQHLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDMEEFRTMWVIGLG 442
Query: 421 RKQGVSPQDGEKFDMRLT--VEEFKSHVVWMYSS---WKQGMQIHVSHLRCQDIPDFVFP 475
K+ P + E + LT ++ F V + ++ GM+I HLR +++ + P
Sbjct: 443 LKK---PDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMGMKITAMHLRRKELHQ-LLP 498
Query: 476 GGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGP 535
V K + + +R+ + + S S +S ++G + S G ++ P
Sbjct: 499 HHVLQDKKAHSTEGRRLTDLNDSSFDLSAGCENSMSVPSSTSTMKTGPLISSSQG-RNSP 557
Query: 536 SVEPSTSSVSS 546
++ T+SV++
Sbjct: 558 ALAVMTASVAN 568
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 225/578 (38%), Positives = 318/578 (55%), Gaps = 31/578 (5%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS +AP D + T++L + L +F EEE R+ +LG+L+ +VK+WI+ ++ K +
Sbjct: 26 ISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNL 85
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ I+ K+FTFGSYRLGV DIDALCV P + R DFF + L+ V
Sbjct: 86 P-QSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-SDFFTSFYDKLKLQEEV 143
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+DL V +A VPVIK F+G+ +D+L+A+L IPEDLD DSLL NLD + + SLNG
Sbjct: 144 KDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 203
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPNI NFR TLR ++ WAKR IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 204 CRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ + LV +FF +F+ W+WPNPV+L + + VWDPR N DR HLMPIITP+YP
Sbjct: 264 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS +T +M EEF++ + +EI K W LFE +FF +K+Y+ + +A
Sbjct: 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPT 383
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSVKSSSQCHYFMGLG 420
+W G VES++R L+ +E++ L + P F EN K + + +GL
Sbjct: 384 EKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDKEEFRTMWVIGLV 442
Query: 421 RKQGVSPQDGEKFDMRLT--VEEFKSHVVWMYSSWKQ---GMQIHVSHLRCQDIPDFVFP 475
K+ ++ E + LT ++ F V + K M+I H++ + + +
Sbjct: 443 FKKT---ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL-- 497
Query: 476 GGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGP 535
P L +KK+ E ++ T L S + S S + + S
Sbjct: 498 ----PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPT-----------SAT 542
Query: 536 SVEPSTSSVSSSTSASSRPQRPAVSIETEDDNATSVSQ 573
P SS SS S P A S+ SV Q
Sbjct: 543 KTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQ 580
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 363 bits (933), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 218/557 (39%), Positives = 318/557 (57%), Gaps = 26/557 (4%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS +AP D + T++L + L +F EEE R+ +LG+L+ +VK+WI+ ++ K +
Sbjct: 26 ISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNL 85
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ I+ K+FTFGSYRLGV DIDALCV P + R DFF + L+ V
Sbjct: 86 P-QSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-SDFFTSFYDKLKLQEEV 143
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+DL V +A VPVIK F+G+ +D+L+A+L IPEDLD DSLL NLD + + SLNG
Sbjct: 144 KDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 203
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPNI NFR TLR ++ WAKR IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 204 CRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ + LV +FF +F+ W+WPNPV+L + + VWDPR N DR HLMPIITP+YP
Sbjct: 264 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS +T +M EEF++ + +EI K W LFE +FF +K+Y+ + +A
Sbjct: 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPT 383
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSVKSSSQCHYFMGLG 420
+W G VES++R L+ +E++ L + P F EN K + + +GL
Sbjct: 384 EKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDKEEFRTMWVIGLV 442
Query: 421 RKQGVSPQDGEKFDMRLT--VEEFKSHVVWMYSSWKQ---GMQIHVSHLRCQDIPDFVFP 475
K+ ++ E + LT ++ F V + K M+I H++ + + +
Sbjct: 443 FKKT---ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL-- 497
Query: 476 GGVRPPKSLNEKKRKRIEVIESTKLKKS------ESSTAGHSSGQKSSQTESGVALDGSH 529
P L +KK+ E ++ T L S +S + S+ S + GS
Sbjct: 498 ----PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSS 553
Query: 530 GLKSGPSVEPSTSSVSS 546
++ P+ + +SV++
Sbjct: 554 QGRNSPAPAVTAASVTN 570
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 361 bits (927), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 223/579 (38%), Positives = 321/579 (55%), Gaps = 31/579 (5%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS +AP D + T++L + L +F EEE R+ +LG+L+ +VK+WI+ ++ K +
Sbjct: 26 ISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNL 85
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ I+ K+FTFGSYRLGV DIDALCV P + R DFF + L+ V
Sbjct: 86 P-QSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-SDFFTSFYDKLKLQEEV 143
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+DL V +A VPVIK F+G+ +D+L+A+L IPEDLD DSLL NLD + + SLNG
Sbjct: 144 KDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 203
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPNI NFR TLR ++ WAKR IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 204 CRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ + LV +FF +F+ W+WPNPV+L + + VWDPR N DR HLMPIITP+YP
Sbjct: 264 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS +T +M EEF++ + +EI K W LFE +FF +K+Y+ + +A
Sbjct: 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPT 383
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSVKSSSQCHYFMGLG 420
+W G VES++R L+ +E++ L + P F E+ + + + +GL
Sbjct: 384 EKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKESPDREEFRTMWVIGLV 442
Query: 421 RKQGVSPQDGEKFDMRLT--VEEFKSHVVWMYSSWKQ---GMQIHVSHLRCQDIPDFVFP 475
K+ ++ E + LT ++ F V + K M+I H++ + + +
Sbjct: 443 FKKT---ENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLHQLL-- 497
Query: 476 GGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGP 535
P L ++K+ E ++ T L S + S S + + S
Sbjct: 498 ----PSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPT-----------SAM 542
Query: 536 SVEPSTSSVSSSTSASSRPQRPAVSIETEDDNATSVSQA 574
P SS SS S P A S+ + + SV QA
Sbjct: 543 KTSPLNSSGSSQGRNSPAPAVTAASVTSIQASEVSVPQA 581
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 212/551 (38%), Positives = 318/551 (57%), Gaps = 16/551 (2%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS +AP D T++L + L +F EEE R+ +L +L+ +VK+WI+ ++ + +
Sbjct: 26 ISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLNNLVKEWIREISESRNL 85
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ I+ K+FTFGSYRLGV DIDALCV P + R +DFF + L+ V
Sbjct: 86 P-QAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-NDFFTSFYDKLKLQEEV 143
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+DL V +A VPVIK F+G+ +D+L+A+L IPEDLD DSLL NLD + + SLNG
Sbjct: 144 KDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 203
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPNI +FR TLR ++ WAK IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 204 CRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ + LV +FF +F+ W+WPNPV+L + + + VWDPR N DR HLMPIITP+YP
Sbjct: 264 IASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS +T +M EEF++ + EI K W LFE FF +K+Y+ + +A
Sbjct: 324 NSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPT 383
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSVKSSSQCHYFMGLG 420
+W G VES++R L+ +E++ L + P F E + K + + +GL
Sbjct: 384 EKQHLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKETADKEEFRTMWVIGLV 442
Query: 421 RKQGVSPQDGEKFDMRLT--VEEFKSHVVWMYSS---WKQGMQIHVSHLRCQDIPDFVFP 475
K+ P++ E + LT ++ F V + ++ M+I HLR +++ + P
Sbjct: 443 LKK---PENSEILSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRRKELHQ-LLP 498
Query: 476 GGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGP 535
V K + + R+ + + L S S ++ + ++G L G+ ++ P
Sbjct: 499 NHVLQKKETHLTESVRLTAVTDSSLLLSIDSENSMTAPSPTGTMKTG-PLTGNPQGRNSP 557
Query: 536 SVEPSTSSVSS 546
++ +SV++
Sbjct: 558 ALAVMAASVTN 568
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/566 (36%), Positives = 308/566 (54%), Gaps = 72/566 (12%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IST+ T + L L ++ LF S ES RV+VL L I +++K+V++ K +
Sbjct: 12 ISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVKKVSLAKHM 71
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+E+ EA K+FT+GSYRLGV GP +DID L V P + +R D+FF L ML+E V
Sbjct: 72 -NEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSR-DNFFQDLEPMLREREEV 129
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
DL VPDA VP+IKFKF G+S+DL++A+L +P DL+ ++LL ++E+ VLSLNG
Sbjct: 130 TDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERCVLSLNG 189
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
RVTD+IL LVPN F+ LR ++FWA+RR IY+N +GF GG+ WA++VAR+CQLYPNA
Sbjct: 190 TRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARICQLYPNA 249
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ +V+V++FF+I W WP P++L PI+ + +W+P+ D+ H MPIITP+YP
Sbjct: 250 VSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSM 309
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
+++N++ +T I+ E RA E+ ++I W LF+ + FF +K+YL I AAK
Sbjct: 310 CATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTITAAAKT 369
Query: 364 AGDFRQWKGWVESRLRQLI------------HMIERDMGGVLQC-------RLYPG---- 400
A +W G VES+LR L+ H + V C ++ G
Sbjct: 370 AEAQLKWAGLVESKLRHLVTRLELVDAIALAHPFNKGFDKVYNCSSEEEAQQVASGVTLE 429
Query: 401 ----------------------------DFSENSVKS-----SSQCHYFMGLGRKQGVSP 427
D SEN K ++ C+ + L +K+G
Sbjct: 430 VAYESTDHEKLANDTVNEEKADNTESKADGSENGEKQIFPVYTTTCYIGLELEKKKG--- 486
Query: 428 QDGEKFDMRLTVEEFKSHVVWMYSSWKQG----MQIHVSHLRCQDIPDFVFPGGVRPPKS 483
++ D+ +EF + W + M + + + + +PD VF G PK+
Sbjct: 487 HPIKRLDISWPTQEFYE----LCKKWDKYDDTLMNVFIKNTKNTALPDEVFEPGEERPKA 542
Query: 484 LNEKKRKRIEVIEST-KLKKSESSTA 508
KKR + ST +LK+ + STA
Sbjct: 543 T--KKRSTADTAHSTEQLKRQKVSTA 566
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 256/403 (63%), Gaps = 4/403 (0%)
Query: 2 EIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDK 61
E IST+ PT + I L + L + F SE+ + RVEVL +V++++ V+ K
Sbjct: 10 EPISTNGPTPKENILNDALIQELKNRGSFESEQATKKRVEVLTLFQRLVQEFVYTVSKSK 69
Query: 62 GISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETP 121
+SD Q+A K+FTFGSYRLGV GP +DID L V P + TR DDFF ++++ P
Sbjct: 70 NMSDS-MAQDAGGKVFTFGSYRLGVYGPGSDIDTLVVVPKHVTR-DDFFSVFADIIRKRP 127
Query: 122 LVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSL 181
+E++ VPDA VP+IK +F+G+S+DL+ A+L +P DL +LL NLDE+ + SL
Sbjct: 128 ELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEKDLRSL 187
Query: 182 NGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYP 241
NG RVTD IL LVP F+ LRC++ WA++R +Y N GF GG+ WA+LVAR+CQLYP
Sbjct: 188 NGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVARICQLYP 247
Query: 242 NALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYP 301
NA+ + +V +FF I+ W WP PV+L I+ + VW+PR DR H MP+ITP+YP
Sbjct: 248 NAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVITPAYP 307
Query: 302 CTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAA 361
+++N++S+T +++ E R + +EI AGK+TW LFE + FF +K YL + A+
Sbjct: 308 SMCATHNITSSTQKVILAELSRGSSIMQEIHAGKKTWSDLFEKHSFFYKYKFYLCVVAAS 367
Query: 362 -KNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFS 403
+A + ++W G++ES+LRQL+ +E GV Y DFS
Sbjct: 368 IDSAEEHKKWSGFIESKLRQLVLKLEV-AEGVEIAHPYVKDFS 409
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/440 (43%), Positives = 271/440 (61%), Gaps = 11/440 (2%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS +A D ++L + L +F EE+ R+ LG+L+ +VK+WI+ ++ K +
Sbjct: 10 ISLAAAKDTDCTLMQKLIETLKPYGVFEEEEQLQHRI--LGKLNNLVKEWIREISELKHL 67
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ I+ K+FTFG YRLGV DIDALCV P + R DFF + L++ V
Sbjct: 68 P-QSVIENVGGKIFTFGPYRLGVHTKGADIDALCVAPRHVDR-SDFFSSFYDKLKQQEEV 125
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+DL V +A VPVIK F+G+ +D+L+A+L IPEDLD DSLL NLD + + SLNG
Sbjct: 126 KDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 185
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPNI +FR TLR ++ WAKR IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 186 CRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 245
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ + LV +FF +F+ W+WPNPV+L + + VWDPR N DR HLMPIITP+YP
Sbjct: 246 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 305
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
NS+YNVS +T +M EEF++ + +EI GK W LF+ +FF +K+Y+ + +A
Sbjct: 306 NSTYNVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKYKHYILLLASAPT 365
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSVKSSSQCHYFMGLG 420
+W G VES++R L+ +E++ L + P F SEN K + + +GL
Sbjct: 366 EKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEKEEFRTMWVIGLV 424
Query: 421 RKQGVSPQDGEKFDMRLTVE 440
K+ ++ E + LT +
Sbjct: 425 FKKM---ENSENLSVDLTYD 441
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 331 bits (848), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 235/358 (65%), Gaps = 3/358 (0%)
Query: 30 FASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGP 89
F SE + RVEVL L + ++++ +V++ K IS E ++ K+FTFGSYRLGV GP
Sbjct: 38 FESETATKKRVEVLNILQSMTEEFVYKVSIKKNIS-EGMARDVGGKIFTFGSYRLGVYGP 96
Query: 90 STDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLL 149
+DID L V P + +R +DFF + +L+ +E++ PVPDA VP+IK +F G+S+DL+
Sbjct: 97 GSDIDTLVVVPKHVSR-NDFFEVFYELLKGRSELEEIAPVPDAFVPIIKIEFAGISIDLI 155
Query: 150 YAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRF 209
+A+L +P DL +LL N+DE+ + +LNG RVTD IL LVP F+ LRC++
Sbjct: 156 FARLDIPRVPRDLTLDDKNLLKNIDEKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKM 215
Query: 210 WAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCP 269
WA++R +Y N GF GG+ WA+LVAR+CQLYPNA+ V+V +FF I++ W WP PV+L
Sbjct: 216 WAQQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQ 275
Query: 270 IQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCE 329
I+ + VW+PR DR+H MP+ITP+YP +++N++S+T +++ EFQR EL
Sbjct: 276 IEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCATHNITSSTQKVILSEFQRGIELMN 335
Query: 330 EIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNA-GDFRQWKGWVESRLRQLIHMIE 386
+I GK++W L E + FF +K YL I A ++ + ++ G VES+LR L+ +E
Sbjct: 336 DINVGKKSWSDLLERHDFFFRYKFYLCIVAATRSTYAEHLKYSGMVESKLRLLVQKLE 393
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 323 bits (827), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/349 (48%), Positives = 228/349 (65%), Gaps = 2/349 (0%)
Query: 4 ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
IS + P D T++L + L +F E+E R+ LG+L+ +VK+WI+ ++ K +
Sbjct: 23 ISLATPKDTDCTLTQKLIETLKPYGVFEEEDELQHRILSLGKLNNLVKEWIREISELKNL 82
Query: 64 SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
+ I+ K+FTFGSYRLGV DIDALCV P + R D F + L++ V
Sbjct: 83 P-QSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-SDLFSSFYEKLKQQEEV 140
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
+DL V +A VPVIK F+G+ +D+L+A+L IPEDLD DSLL NLD + + SLNG
Sbjct: 141 KDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 200
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
CRVTD IL LVPNI +FR TLR ++ WAKR IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 201 CRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 260
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
+ + LV +FF +F+ W+WPNPV+L + + VWDPR N DR HLMPIITP+YP
Sbjct: 261 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 320
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFK 352
NS+YNVS +T +M EEF++ + +EI K W LF+ +FF +K
Sbjct: 321 NSTYNVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQKYK 369
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 321 bits (823), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 245/383 (63%), Gaps = 7/383 (1%)
Query: 5 STSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGIS 64
+T+A L+ +EL+K E F +E+E+ RV+VL L + + ++ V+ K +S
Sbjct: 18 ATAAENKLNDSLIQELKK----EGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMS 73
Query: 65 DEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVE 124
D ++A K+FT+GSYRLGV GP +DID L V P + TR +DFF +L+E ++
Sbjct: 74 D-GMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTR-EDFFTVFDSLLRERKELD 131
Query: 125 DLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGC 184
++ PVPDA VP+IK KF+G+S+DL+ A+L +P L +LL NLDE+ + +LNG
Sbjct: 132 EIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGT 191
Query: 185 RVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNAL 244
RVTD IL LVP FR LR ++ WA+RR +Y+N GF GG+ WA+LVAR+CQLYPNA
Sbjct: 192 RVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNAC 251
Query: 245 PNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTN 304
V+++RFF I + W WP PV+L PI+ + VW+P+ +DR H MP+ITP+YP
Sbjct: 252 SAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMC 311
Query: 305 SSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNA 364
+++N++ +T +++ +EF R ++ +I + K++W LFE FF +K YL+I + +
Sbjct: 312 ATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGS 371
Query: 365 GD-FRQWKGWVESRLRQLIHMIE 386
+ +W G VES++R L+ +E
Sbjct: 372 DEQHLKWSGLVESKVRLLVMKLE 394
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 219/411 (53%), Gaps = 25/411 (6%)
Query: 19 ELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDK-GISDEEQIQEANAKLF 77
EL++ LV ++ ++ + + + ++ ++ W K++ ++ G++D+ ++ A ++
Sbjct: 4 ELKEFLVKNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAAT--IY 61
Query: 78 TFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVI 137
+GSYRL V G ++DIDA V TR DDF+ L+ L P V++L +P R P +
Sbjct: 62 VYGSYRLNVYGNNSDIDACIVSNSTITR-DDFYDGLYAELLNNPDVKELKQIPSKRSPHL 120
Query: 138 KFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNI 197
+ + DL +++ ++ +P++LD L +++L N+DE ++NG R TD I + VPN
Sbjct: 121 SMIYLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVRNTDIIDAFVPNH 180
Query: 198 RN--FRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNV-LVSRFFK 254
FR +R ++ W K+RGIY FL GI+ +LVA+V L NV L+ +FF+
Sbjct: 181 SEEAFRVMVRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVIS-ENYQLDNVRLLEKFFQ 239
Query: 255 IFAHWKW-PNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTT 313
+++ W W PVML + N + ++ ++ I+TP+ P N++++++ +
Sbjct: 240 VYSSWDWLRTPVMLGT-----------NDDFNDKKKEGVIQILTPASPSENAAFSITKFS 288
Query: 314 LRIMQEEFQRAKELCEEIEA-GKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKG 372
L +++ E +R +E+ E + G W LF+P H F + +++ + + + G
Sbjct: 289 LEMIKRELKRGQEIVHEFSSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEGLTTTIG 348
Query: 373 WVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQ 423
ES L L+ + ++ +++ + P F + + + + Y++G+ K+
Sbjct: 349 KFESGLVNLMKGLS-EIEEIIEANVIPNGFLD---EENEKYFYYVGMNVKR 395
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 7/211 (3%)
Query: 231 LLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRK 290
+LVAR CQLYPNA+ + LV +FF +F+ W+WPNPV+L + + VWDPR N DR
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 291 HLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGS 350
HLMPIITP+YP NS+YNVS +T +M EEF++ + +EI K W LF+ +FF
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQK 120
Query: 351 FKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSV 407
+K+Y+ + +A +W G VES++R L+ +E++ L + P F SENS
Sbjct: 121 YKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPSPSENSE 179
Query: 408 KSSSQCHYFMGLGRKQGVSPQDGEKFDMRLT 438
K + + +GL K+ ++ E + LT
Sbjct: 180 KEEFRTMWVIGLVFKKM---ENSENLSVDLT 207
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 36/180 (20%)
Query: 71 EANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVP 130
E K+ FGSYR G+ ++D+D + A ++ ++ +++ ++ P+
Sbjct: 919 EGPVKIACFGSYRTGLMTKNSDLDLVIYSSKEALL--PYYDRVKSIIKNE--FSNVMPIR 974
Query: 131 DARVPVIKF--KFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTD 188
AR+P+IKF ++N + DL + L +P +HN D L LN + +
Sbjct: 975 GARIPIIKFTGQYN-IHCDLSFDNL----LP----------IHNSD----LILNYSLIDE 1015
Query: 189 RILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPN-ALPNV 247
R+ ++ L +++WA R I F W ++V Q P LPN+
Sbjct: 1016 RV----------KTLLMLVKYWASNRLIDKTHHAFPSSYTWCIMVIFYLQQIPEPILPNL 1065
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 39/196 (19%)
Query: 73 NAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDA 132
+A L FGSY + P +DID + + L L++ L ++ V A
Sbjct: 217 DADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKA 276
Query: 133 RVPVIKF--KFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRI 190
RVP+IKF +G+ +D+ + E+T NG I
Sbjct: 277 RVPIIKFVEPHSGIHIDVSF------------------------ERT----NGIEAAKLI 308
Query: 191 LSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPN---- 246
+ + R + ++ + R + + G LGG + LV ++P + N
Sbjct: 309 REWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDP 368
Query: 247 -----VLVSRFFKIFA 257
VL+ FF+++
Sbjct: 369 KDNLGVLLIEFFELYG 384
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 73 NAKLFTFGSYRLGVAGPSTDIDALCVGPCY---ATRHDDFFGKLFRMLQETPLVEDLTPV 129
+ L+ FGS+ + P++D+D + + P + T+ D F L L++ L ++ +
Sbjct: 279 DVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFV--LAHHLKKLKLASEVQVI 336
Query: 130 PDARVPVIKF--KFNGVSVDLLYAQ 152
A VP+IKF V VD+ + Q
Sbjct: 337 TTANVPIIKFVDPLTKVHVDISFNQ 361
>sp|Q6GLI9|RPA49_XENLA DNA-directed RNA polymerase I subunit RPA49 OS=Xenopus laevis
GN=polr1e PE=2 SV=1
Length = 419
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 398 YPGD-FSENSVKSSSQCHYFMGLGRKQ--GVSPQDGEKFDMRLTVEEFKSHVVWMYSSWK 454
Y G+ FS +++K SS C YF+G+ K+ + D E+F M+ + K
Sbjct: 65 YVGNNFSSDTLKCSSLCRYFVGVLNKETGKMEVYDAEQFKMQPIL--------------K 110
Query: 455 QGMQIHVSHLRCQDIPDFVFPGGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQ 514
GM+ + L +DI D +P KS EK IE + K K++ SS +
Sbjct: 111 SGME---NELHTEDIVD-------QPTKSYREKVDALIESFGTNKQKRALSS-------R 153
Query: 515 KSSQTESGVALDGSHGLKSGPSVEPSTSSVSSSTSASSRPQRPAVSIETEDDNATSVSQA 574
K +Q S + L+ + + +E ++ +A R Q ++ + D NA A
Sbjct: 154 KLNQVGSDI-LNKAMAKAAEEIIESRGTTELIKDAAEKREQDTSLFLPPCDFNADKPENA 212
Query: 575 QNFNQVGATVA-AALATGT 592
F+ + + V AAL T +
Sbjct: 213 YKFDNLISPVEYAALETAS 231
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 73 NAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDA 132
+A L FGSY + P +DID + + + L L+ L ++ + A
Sbjct: 233 DANLHCFGSYATDLYLPGSDIDCVVNSKSGDKDNKNALYSLASYLKRNGLATQVSVIAKA 292
Query: 133 RVPVIKF 139
RVP+IKF
Sbjct: 293 RVPIIKF 299
>sp|Q8WZL4|PALA_YARLI pH-response regulator protein RIM20 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RIM20 PE=3 SV=2
Length = 773
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 15 ISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTM-DKGISDEEQIQEAN 73
I++KELEK VD+ +ASE++ L + EVL +LD KD+ + M D I E IQ
Sbjct: 619 ITSKELEKYTVDQD-WASEQKEL-QEEVLEKLDVANKDFRSSLDMNDAAIHRENAIQSLE 676
Query: 74 AKLFTF 79
F++
Sbjct: 677 VAYFSY 682
>sp|B3DIY3|MMS22_DANRE Protein MMS22-like OS=Danio rerio GN=mms22l PE=2 SV=1
Length = 1240
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 321 FQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGD--FRQWKGWVESRL 378
Q+AK C G + L+ + F F L +H++ ++AG +RQ KG + S+
Sbjct: 465 LQQAKSCCSPAPVGSSSHTQLYRTANSFHIFLRILALHLSQEHAGGAPWRQIKGRLYSKF 524
Query: 379 RQLIHMIERDMG 390
Q M DMG
Sbjct: 525 HQRRMMELSDMG 536
>sp|Q08D12|CB044_XENTR WD repeat-containing protein C2orf44 homolog OS=Xenopus tropicalis
PE=2 SV=1
Length = 726
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 433 FDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGGVRPPKSLNEKKRKRI 492
FD +++++ K V +Y K+G H + + PGGV PP L +K+K I
Sbjct: 453 FDSSMSIQDKKKLVESLY---KEGQSAHR---------EILLPGGVAPPTYL--RKKKLI 498
Query: 493 EVIESTKLKKSESSTAGHSSGQKS 516
E I S +S +S+A ++S
Sbjct: 499 EEIRSYDGDQSPTSSANEFDDKRS 522
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,522,347
Number of Sequences: 539616
Number of extensions: 9781942
Number of successful extensions: 31274
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 29819
Number of HSP's gapped (non-prelim): 1258
length of query: 636
length of database: 191,569,459
effective HSP length: 124
effective length of query: 512
effective length of database: 124,657,075
effective search space: 63824422400
effective search space used: 63824422400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)