Query 006658
Match_columns 636
No_of_seqs 229 out of 732
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 12:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2245 Poly(A) polymerase and 100.0 3E-140 6E-145 1125.1 38.0 473 1-483 18-499 (562)
2 PTZ00418 Poly(A) polymerase; P 100.0 1E-135 3E-140 1125.0 51.5 474 1-480 55-538 (593)
3 COG5186 PAP1 Poly(A) polymeras 100.0 3E-124 7E-129 968.5 31.8 497 1-507 10-551 (552)
4 PF04928 PAP_central: Poly(A) 100.0 3.2E-72 6.8E-77 573.0 21.9 248 1-345 7-254 (254)
5 COG5260 TRF4 DNA polymerase si 100.0 3.3E-31 7.1E-36 286.4 22.4 261 14-330 55-342 (482)
6 PF04926 PAP_RNA-bind: Poly(A) 100.0 1E-31 2.2E-36 256.1 8.2 133 346-480 1-153 (157)
7 KOG1906 DNA polymerase sigma [ 100.0 5.5E-29 1.2E-33 274.2 23.4 267 10-330 57-341 (514)
8 cd05402 NT_PAP_TUTase Nucleoti 99.8 5.2E-19 1.1E-23 159.1 12.3 110 38-193 1-113 (114)
9 KOG2277 S-M checkpoint control 99.7 2.4E-16 5.1E-21 178.2 20.7 250 30-331 126-431 (596)
10 TIGR03671 cca_archaeal CCA-add 99.6 1.4E-12 2.9E-17 141.9 28.7 341 21-443 3-362 (408)
11 PRK13300 tRNA CCA-pyrophosphor 99.5 5.2E-12 1.1E-16 139.0 31.0 308 20-398 3-327 (447)
12 COG1746 CCA1 tRNA nucleotidylt 99.2 1.6E-08 3.5E-13 109.7 28.7 307 18-398 5-328 (443)
13 PF03813 Nrap: Nrap protein; 99.1 2.7E-08 5.8E-13 119.6 28.0 341 81-443 1-424 (972)
14 smart00572 DZF domain in DSRM 98.4 1.9E-05 4.1E-10 81.4 18.2 213 76-329 5-230 (246)
15 KOG2054 Nucleolar RNA-associat 98.3 1.2E-05 2.6E-10 94.6 15.0 269 73-360 147-464 (1121)
16 cd05400 NT_2-5OAS_ClassI-CCAas 97.7 0.00049 1.1E-08 64.3 11.8 77 73-152 27-110 (143)
17 cd05397 NT_Pol-beta-like Nucle 97.4 0.00016 3.6E-09 56.7 4.3 26 73-98 17-42 (49)
18 PF03828 PAP_assoc: Cid1 famil 97.4 5.2E-05 1.1E-09 61.1 1.2 55 244-302 1-59 (60)
19 PF01909 NTP_transf_2: Nucleot 97.3 0.00028 6.1E-09 60.6 4.7 32 73-104 14-45 (93)
20 PF09249 tRNA_NucTransf2: tRNA 97.1 0.0013 2.8E-08 60.6 7.1 93 204-318 3-97 (114)
21 cd05403 NT_KNTase_like Nucleot 97.0 0.0024 5.2E-08 54.2 7.6 32 74-105 19-50 (93)
22 PF03813 Nrap: Nrap protein; 96.7 0.014 3.1E-07 71.1 13.1 155 183-344 668-839 (972)
23 PF14091 DUF4269: Domain of un 96.1 0.065 1.4E-06 52.0 11.3 117 76-219 18-144 (152)
24 COG1669 Predicted nucleotidylt 95.9 0.032 6.9E-07 50.3 7.7 28 74-101 25-52 (97)
25 PF07528 DZF: DZF domain; Int 95.3 0.81 1.7E-05 47.8 16.5 211 79-329 2-232 (248)
26 PRK13746 aminoglycoside resist 94.6 0.069 1.5E-06 56.1 6.5 32 74-105 29-60 (262)
27 COG1708 Predicted nucleotidylt 94.5 0.06 1.3E-06 48.2 5.0 29 73-101 26-54 (128)
28 cd00141 NT_POLXc Nucleotidyltr 92.8 1.2 2.6E-05 47.7 12.0 113 72-224 159-277 (307)
29 PRK02098 phosphoribosyl-dephos 91.8 0.33 7.2E-06 49.9 6.0 34 73-106 120-159 (221)
30 PF10421 OAS1_C: 2'-5'-oligoad 91.7 0.3 6.6E-06 49.0 5.5 56 197-252 41-97 (190)
31 TIGR03135 malonate_mdcG holo-A 90.8 0.42 9.2E-06 48.4 5.6 34 73-106 108-147 (202)
32 PF14792 DNA_pol_B_palm: DNA p 87.6 1.1 2.3E-05 41.2 5.3 52 72-124 23-77 (112)
33 cd05401 NT_GlnE_GlnD_like Nucl 86.6 2.5 5.5E-05 40.8 7.6 48 72-119 54-101 (172)
34 COG1665 Predicted nucleotidylt 85.3 0.21 4.7E-06 52.6 -0.6 25 77-101 125-149 (315)
35 PF03445 DUF294: Putative nucl 83.7 6.1 0.00013 37.4 8.5 49 71-119 47-96 (138)
36 KOG3793 Transcription factor N 82.0 28 0.0006 37.2 13.0 214 13-258 38-264 (362)
37 COG2844 GlnD UTP:GlnB (protein 77.3 7.6 0.00017 46.8 8.1 58 43-105 41-98 (867)
38 PF03710 GlnE: Glutamate-ammon 75.0 5 0.00011 41.6 5.3 61 59-119 113-179 (247)
39 PRK05007 PII uridylyl-transfer 72.0 13 0.00027 45.7 8.5 56 42-102 54-109 (884)
40 PRK08609 hypothetical protein; 71.0 21 0.00046 41.6 9.7 109 72-224 174-283 (570)
41 KOG2534 DNA polymerase IV (fam 69.3 17 0.00037 39.6 7.7 48 72-120 170-217 (353)
42 PF10620 MdcG: Phosphoribosyl- 64.4 10 0.00023 38.7 4.9 42 73-115 116-163 (213)
43 PRK00227 glnD PII uridylyl-tra 64.2 22 0.00048 42.5 8.2 65 36-117 5-69 (693)
44 smart00483 POLXc DNA polymeras 63.7 84 0.0018 34.2 11.9 30 72-102 163-192 (334)
45 PF03281 Mab-21: Mab-21 protei 62.8 2E+02 0.0044 30.1 15.6 97 197-323 190-289 (292)
46 PF10127 Nuc-transf: Predicted 60.7 7.1 0.00015 40.2 3.0 27 74-100 21-47 (247)
47 PRK01759 glnD PII uridylyl-tra 60.7 29 0.00063 42.5 8.5 56 42-102 30-85 (854)
48 PRK03059 PII uridylyl-transfer 60.3 14 0.0003 45.1 5.8 53 42-101 37-89 (856)
49 PF09970 DUF2204: Nucleotidyl 54.5 21 0.00045 35.5 5.0 76 73-154 16-95 (181)
50 PRK01293 phosphoribosyl-dephos 50.9 30 0.00065 35.4 5.5 44 73-118 109-158 (207)
51 PRK00275 glnD PII uridylyl-tra 48.5 59 0.0013 40.1 8.4 32 72-103 77-108 (895)
52 PRK03381 PII uridylyl-transfer 45.7 44 0.00096 40.4 6.7 30 72-101 56-85 (774)
53 PRK14109 bifunctional glutamin 44.1 45 0.00098 41.6 6.6 48 72-119 722-773 (1007)
54 KOG2054 Nucleolar RNA-associat 42.6 67 0.0015 39.9 7.4 80 185-268 806-890 (1121)
55 TIGR01693 UTase_glnD [Protein- 42.6 77 0.0017 38.7 8.2 31 72-102 42-72 (850)
56 PRK04374 PII uridylyl-transfer 42.4 83 0.0018 38.8 8.4 29 73-101 72-100 (869)
57 PRK11072 bifunctional glutamin 41.9 49 0.0011 41.0 6.4 48 72-119 153-208 (943)
58 PF03296 Pox_polyA_pol: Poxvir 40.5 33 0.00072 33.2 3.6 78 20-118 9-92 (149)
59 COG1391 GlnE Glutamine synthet 40.3 1.4E+02 0.0031 36.9 9.7 45 75-119 173-225 (963)
60 COG3541 Predicted nucleotidylt 39.9 14 0.00029 38.9 1.1 21 79-99 16-36 (248)
61 COG2413 Predicted nucleotidylt 38.8 52 0.0011 33.9 4.9 26 76-101 40-65 (228)
62 PF10281 Ish1: Putative stress 37.0 27 0.00058 26.0 2.0 31 17-48 6-36 (38)
63 PRK11072 bifunctional glutamin 36.9 67 0.0014 40.0 6.5 60 59-119 667-736 (943)
64 COG1796 POL4 DNA polymerase IV 36.6 58 0.0012 35.6 5.2 70 74-152 181-250 (326)
65 PHA02603 nrdC.11 hypothetical 31.4 27 0.00059 38.2 1.7 24 76-99 6-29 (330)
66 PRK14109 bifunctional glutamin 31.4 1.5E+02 0.0032 37.2 8.3 48 72-119 214-265 (1007)
67 PRK05092 PII uridylyl-transfer 28.6 92 0.002 38.6 5.8 30 72-101 104-133 (931)
68 PF15431 TMEM190: Transmembran 27.7 35 0.00076 31.8 1.5 30 199-228 72-103 (134)
69 PF07357 DRAT: Dinitrogenase r 26.0 28 0.0006 36.9 0.6 19 363-381 97-115 (262)
70 PHA02996 poly(A) polymerase la 24.7 77 0.0017 35.6 3.7 76 22-118 128-209 (467)
71 PRK14108 bifunctional glutamin 23.8 2.9E+02 0.0063 34.7 8.8 48 72-119 185-238 (986)
72 PF04439 Adenyl_transf: Strept 21.8 43 0.00094 35.7 1.1 79 76-154 24-108 (282)
73 cd05398 NT_ClassII-CCAase Nucl 20.4 4.2E+02 0.009 25.1 7.4 67 73-153 16-87 (139)
No 1
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]
Probab=100.00 E-value=2.6e-140 Score=1125.11 Aligned_cols=473 Identities=50% Similarity=0.898 Sum_probs=454.1
Q ss_pred CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658 1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG 80 (636)
Q Consensus 1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG 80 (636)
|+|||+|+||++|+++|.+|+++|+++|+||++||..+|++||++|++||++|++++++++|++ ++++.+++|+|+|||
T Consensus 18 t~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p-~~~~~~aggkIftfG 96 (562)
T KOG2245|consen 18 TQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLP-DGMIENAGGKIFTFG 96 (562)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhhhhcCceEEecc
Confidence 7899999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred eeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCC
Q 006658 81 SYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPE 160 (636)
Q Consensus 81 Sy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~ 160 (636)
|||||||+||||||+|||+|+|++|+ |||..|.++|+++++|++|++|++|+||||||+|+||+|||+||+++.+.+|+
T Consensus 97 SYRLGVhg~GADIDtLcV~Prhv~R~-DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllfArL~l~~VP~ 175 (562)
T KOG2245|consen 97 SYRLGVHGPGADIDTLCVGPRHVSRS-DFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLFARLALPVVPE 175 (562)
T ss_pred ceeecccCCCCCcceeeeccccccHH-HHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeeehhcccccCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC
Q 006658 161 DLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240 (636)
Q Consensus 161 ~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~ 240 (636)
+||+.||++|+|+||+|+||||||||||+||++||+.+.||.+|||||+|||+||||+|.+||||||+|||||||+||+|
T Consensus 176 dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVARiCQLY 255 (562)
T KOG2245|consen 176 DLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVARICQLY 255 (562)
T ss_pred cccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHH
Q 006658 241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEE 320 (636)
Q Consensus 241 Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~E 320 (636)
||++++.|+.+||.+|++|+||+||+|++++++.+++++|||+.|+.||+|+||||||+||+||++||||+||+++|++|
T Consensus 256 PNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~E 335 (562)
T KOG2245|consen 256 PNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEE 335 (562)
T ss_pred CCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccccccccccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeCCC
Q 006658 321 FQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPG 400 (636)
Q Consensus 321 f~RA~~il~~i~~~~~~W~~Lf~~~~FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~P~ 400 (636)
|+||.+||++|+.++.+|.+|||+++||.+|||||+|+++|.++|++.+|.||||||+|.|+.+||++ ..+..|||+|+
T Consensus 336 f~~g~~I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~-~~i~~ahp~P~ 414 (562)
T KOG2245|consen 336 FKRGLEICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERN-QVILIAHPNPK 414 (562)
T ss_pred HHHHHHHHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhh-cceEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 57999999999
Q ss_pred CcCCCC---CCCcceEEEEEeeeecCCCCCCCCcccchHHHHHHHHHhhhh----hccccCCC--cEEEEEEecCCCCCC
Q 006658 401 DFSENS---VKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVW----MYSSWKQG--MQIHVSHLRCQDIPD 471 (636)
Q Consensus 401 ~f~~~~---~~~~~~~~ffIGL~~~~~~~~~~~~~~dl~~~i~~F~~~~v~----~~~~~~~~--m~i~v~~vk~~~Lp~ 471 (636)
.|.+.. ....|...|+|||...+ ..++||+..+++|. ..++ .+..+.+| |.+.+.|++|++|+.
T Consensus 415 ~f~~~~~~~~~~~~~~~~~igl~~~e------~~~~Dlt~~iq~f~-~~v~~q~~~~~~~~~g~~~~~~~~~~krr~l~~ 487 (562)
T KOG2245|consen 415 KFKDTYNCPLEEDPESLWFIGLEFDE------NVKIDLTKDIQSFK-KNVERQAVNLTLIKAGCDVEIDFGHVKRRSLIQ 487 (562)
T ss_pred cccccccCCcccchhHhhhhcccccc------cccchhhhhHHHhh-hhhhhcceeeeeeeccccccccccccccccccc
Confidence 998643 23356789999998754 34599999999999 8887 55667888 777778999999999
Q ss_pred ccCCCCCCCCCC
Q 006658 472 FVFPGGVRPPKS 483 (636)
Q Consensus 472 ~v~~~~~~p~~~ 483 (636)
+++.+..|..|.
T Consensus 488 ~~~~~~l~~~k~ 499 (562)
T KOG2245|consen 488 TITKEFLRLCKQ 499 (562)
T ss_pred ccCHHHhhHHHh
Confidence 999988866553
No 2
>PTZ00418 Poly(A) polymerase; Provisional
Probab=100.00 E-value=1.4e-135 Score=1125.04 Aligned_cols=474 Identities=43% Similarity=0.815 Sum_probs=454.1
Q ss_pred CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658 1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG 80 (636)
Q Consensus 1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG 80 (636)
|+|||+++||++|++.+++|+++|+++|+|||+||.++|++||++|++||++|+++++.++|++ ++++.+++++|+|||
T Consensus 55 t~Pis~~~Pt~~d~~~s~~L~~~L~~~~~fes~ee~~kR~~vL~~L~~iv~~wv~~vs~~k~~~-~~~~~~~~g~I~tfG 133 (593)
T PTZ00418 55 TDPISLNGPTEEDLKLSNELINLLKSYNLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGIN-EEEASQISGKLFTFG 133 (593)
T ss_pred CCCccCCCCChHHHhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHhcCCeEEEEec
Confidence 7899999999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred eeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCC
Q 006658 81 SYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPE 160 (636)
Q Consensus 81 Sy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~ 160 (636)
|||||||+|+||||+|||+|+|++|+ +||..|+++|+++++|++|++|++|+||||||+++||+|||+||+++...+|+
T Consensus 134 SYrLGV~~pgSDID~L~V~P~~vtre-dFF~~f~~~L~~~~~V~eL~~V~~A~VPiIk~~~~GI~iDL~fa~l~~~~vp~ 212 (593)
T PTZ00418 134 SYRLGVVAPGSDIDTLCLAPRHITRE-SFFSDFYAKLQQDPNITKLQPVPDAYTPVIKFVYDGIDIDLLFANLPLPTIPD 212 (593)
T ss_pred cccccCCCCCCcccEEEECCCCCCHH-HHHHHHHHHHhcCCCcceeeccCccccCeEEEEECCEEEeeeecccCCCCCCc
Confidence 99999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchh-hccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhh
Q 006658 161 DLDSLQDS-LLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQL 239 (636)
Q Consensus 161 ~l~l~~d~-lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl 239 (636)
++++.+|+ +|++||++++|||||+||+|+|+++||+.+.||.+|||||+|||+||||+|++||||||+|||||||+||+
T Consensus 213 ~~~~l~d~~lL~nlde~s~rSLNG~Rvtd~Il~lVPn~~~Fr~aLR~IKlWAkrRGIYsNv~GflGGV~wAILvARVCQL 292 (593)
T PTZ00418 213 CLNSLDDDYILRNVDEKTVRSLNGCRVADLILASVPNKDYFRTTLRFIKLWAKRRGIYSNVLGYLGGVSWAILTARICQL 292 (593)
T ss_pred cccccCchhhhhcCCHHHhhhhccHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHh
Confidence 99988886 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhccCCCCCceeecccCC-----CCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhH
Q 006658 240 YPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQY-----QAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTL 314 (636)
Q Consensus 240 ~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~-----g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl 314 (636)
|||+++++||.+||.+|++|+||+||+|+++++ |.+++++|||+.|++|++|+||||||+||+||+|||||.+|+
T Consensus 293 yPna~~s~Lv~~FF~iys~W~Wp~PV~L~~i~~~~~~~g~~~~~VWdPr~~~~dr~h~MPIITPayP~mNst~nVt~sT~ 372 (593)
T PTZ00418 293 YPNFAPSQLIHKFFRVYSIWNWKNPVLLCKIKEVPNIPGLMNFKVWDPRVNPQDRAHLMPIITPAFPSMNSTHNVTYTTK 372 (593)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCeEcccccccccCCcccCCcccCCCCCcccccccCCeecCCCCCccccccccHHHH
Confidence 999999999999999999999999999998764 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCCCccccccccccccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCcee
Q 006658 315 RIMQEEFQRAKELCEEIEA-GKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVL 393 (636)
Q Consensus 315 ~~I~~Ef~RA~~il~~i~~-~~~~W~~Lf~~~~FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~ 393 (636)
++|++||+||++|++++.. ++.+|.+||+|++||.+|++||+|++.+.+++++..|.||||||||.|+.+||+ .+.+
T Consensus 373 ~vI~~Ef~Ra~~i~~~i~~~~~~~W~~Lfep~~Ff~~Yk~yl~V~v~a~~~~~~~~w~G~VESRlR~Lv~~LE~--~~~i 450 (593)
T PTZ00418 373 RVITEEFKRAHEIIKYIEKNSENTWTNVLEPLDFFTSYKHFLVIQVYATNEHVHNKWEGWIESKIRFLIKKLET--LNNL 450 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHcCCcchhhhcceEEEEEEEECCHHHhhhhhhHHHHHHHHHHHHhhc--cCCc
Confidence 9999999999999999988 889999999999999999999999999999999999999999999999999998 5678
Q ss_pred EEeeCCCCcCCCCCCCcceEEEEEeeeecCCCCCCCCcccchHHHHHHHHHhhhhhcc---ccCCCcEEEEEEecCCCCC
Q 006658 394 QCRLYPGDFSENSVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYS---SWKQGMQIHVSHLRCQDIP 470 (636)
Q Consensus 394 ~~~p~P~~f~~~~~~~~~~~~ffIGL~~~~~~~~~~~~~~dl~~~i~~F~~~~v~~~~---~~~~~m~i~v~~vk~~~Lp 470 (636)
.+||||++|.+.+.+..|+++|||||.++.... .+..++||+.++++|+ +.|++|. +|.++|+|+|+|||+++||
T Consensus 451 ~~~p~P~~f~~~~~~~~~~~~ffIGL~~~~~~~-~~~~~~Dl~~~~~~F~-~~i~~~~~~~~~~~~~~i~v~~Vk~~~Lp 528 (593)
T PTZ00418 451 KIRPYPKFFKYQDDGWDYASSFFIGLVFFSKNV-YNNSTFDLRYAIRDFV-DIINNWPEMEKYPDQIDINIKYLKKSQLP 528 (593)
T ss_pred eEeecCcccccCCCCceeEEEEEEeEeeccCCC-CCCceEecHHHHHHHH-HHHHhhhhcccCCCCceEEEEEeehHhCC
Confidence 999999999987766789999999999876433 2345899999999999 9999885 4678999999999999999
Q ss_pred CccCCCCCCC
Q 006658 471 DFVFPGGVRP 480 (636)
Q Consensus 471 ~~v~~~~~~p 480 (636)
++||++|.+.
T Consensus 529 ~~v~~~~~~~ 538 (593)
T PTZ00418 529 AFVLSQTPEE 538 (593)
T ss_pred HhhccCCCcC
Confidence 9999987643
No 3
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=100.00 E-value=3.4e-124 Score=968.47 Aligned_cols=497 Identities=39% Similarity=0.744 Sum_probs=466.8
Q ss_pred CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658 1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG 80 (636)
Q Consensus 1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG 80 (636)
|+|||+.+.|+++.+++.+|+++|++.|.||++.|.+.|.+||+.|+.++++++.++++++|+. +.++.++++|||+||
T Consensus 10 TgP~ST~~aTe~En~Ln~~li~eLk~~g~FE~~~E~~~Rv~VL~~Lq~~~~eFV~~vs~~K~m~-dgmar~aGGKIFTyG 88 (552)
T COG5186 10 TGPLSTREATEEENRLNGELIKELKERGFFEDDKEGQTRVRVLGKLQFMVREFVARVSRNKGMG-DGMARPAGGKIFTYG 88 (552)
T ss_pred cCCcccccccHHHhhhhHHHHHHHHHcCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccccCCceeeeec
Confidence 7899999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred eeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCC
Q 006658 81 SYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPE 160 (636)
Q Consensus 81 Sy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~ 160 (636)
|||||||+||||||++||.|+|++|+ |||+.|..+|++.++++++.+|++|+|||||++|.||+|||.||+++.+.+|.
T Consensus 89 SYRLGVhgpGsDIDtLvvVPkHVsR~-dFFt~f~~~Lrer~ei~eva~vpDAfVPIIK~KF~GIsIDLifARLs~P~Vp~ 167 (552)
T COG5186 89 SYRLGVHGPGSDIDTLVVVPKHVSRS-DFFTHFYEELRERPEIEEVAKVPDAFVPIIKLKFQGISIDLIFARLSIPVVPD 167 (552)
T ss_pred ceeeeccCCCCCcceEEEecccccHH-HHHHHHHHHhccCcchhhhccCCcccceeEEEEecCccceeeeeeccCCcCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC
Q 006658 161 DLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240 (636)
Q Consensus 161 ~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~ 240 (636)
.|++.|+++|++|||+|++||||.||+|+||++||+...|+.+|||||+||+||.||.|.+||.||++|+|||||+||||
T Consensus 168 ~l~Lsd~nLLk~~dEkcilsLNGtRVTDeiL~LVP~~~vF~~ALRaIK~WAqRRavYaN~~GfpGGVAwam~VARiCQLY 247 (552)
T COG5186 168 GLNLSDDNLLKSMDEKCILSLNGTRVTDEILNLVPSVKVFHSALRAIKYWAQRRAVYANPYGFPGGVAWAMCVARICQLY 247 (552)
T ss_pred cccccchhhhhcchHHHHHhhcCceehHHHHHhCCchHHHHHHHHHHHHHHHhhhhhccccCCcchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHH
Q 006658 241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEE 320 (636)
Q Consensus 241 Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~E 320 (636)
||++...|+.+||.++++|+||+||+|+|+++|.+..++|||+.|+.|++|.||||||+||+||.|||||.||..+|.+|
T Consensus 248 PNA~S~vIv~kFF~ils~WnWPqPviLkPieDgplqvrvWnPKvYpsDk~HRMPvITPAYPSMCATHNit~STq~vIl~E 327 (552)
T COG5186 248 PNASSFVIVCKFFEILSSWNWPQPVILKPIEDGPLQVRVWNPKVYPSDKYHRMPVITPAYPSMCATHNITNSTQHVILME 327 (552)
T ss_pred cCcchHhHHHHHHHHHHhcCCCCCeEeeeccCCCeeEEeeCCccCcccccccCccccCCchhhhhhccccchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccccccccccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeCCC
Q 006658 321 FQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPG 400 (636)
Q Consensus 321 f~RA~~il~~i~~~~~~W~~Lf~~~~FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~P~ 400 (636)
|-||.+|+++|+....+|..||+..|||.+||+||.|++.+..+|++.+|.|+||||+|.|+.+||. ...++.|||||+
T Consensus 328 fvRa~~I~~di~~n~~~w~~lFek~DFF~RYk~yleitA~s~~~E~~lKW~GlvESKiR~Lv~klE~-vd~i~~AhPF~K 406 (552)
T COG5186 328 FVRAHKILSDIERNALDWRRLFEKSDFFSRYKLYLEITAMSSCEEDFLKWEGLVESKIRILVSKLEA-VDDILYAHPFPK 406 (552)
T ss_pred HHHHHHhhhhHhhccccHHHHHHhhhHHHHHhHhhhhhhhhcchhhhhhhhhHHHHHHHHHHHHHHH-hhhhhhcCcCCh
Confidence 9999999999999989999999999999999999999999999999999999999999999999998 467899999999
Q ss_pred CcCCC------------------------------------------CCCCcceEEEEEeeeecCCCCCCCCcccchHHH
Q 006658 401 DFSEN------------------------------------------SVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLT 438 (636)
Q Consensus 401 ~f~~~------------------------------------------~~~~~~~~~ffIGL~~~~~~~~~~~~~~dl~~~ 438 (636)
.|... +....|++.|||||+.... ..++++|+..+
T Consensus 407 ~F~~~y~c~~Ee~~e~i~~~~~~~~a~~s~d~~kl~~d~~~eees~~d~~k~y~tt~yIgld~~~~---~~~kkvdi~~p 483 (552)
T COG5186 407 AFRKVYNCVAEESIEKIGSGVTLEVAYESTDHEKLANDTVPEEESMEDGMKVYCTTFYIGLDVIPV---KPGKKVDIEQP 483 (552)
T ss_pred hhhhhcCCccHHHHHHHhcccceeehhhccchhhhccccCchhhhhccccceeeeEEEEEEEeeec---CCCceeeeecc
Confidence 99620 0023599999999998643 23578999999
Q ss_pred HHHHHHhhhhhccccC-CCcEEEEEEecCCCCCCccCCC-CCCCCCCchhhhccccccc-cccccccCCCCC
Q 006658 439 VEEFKSHVVWMYSSWK-QGMQIHVSHLRCQDIPDFVFPG-GVRPPKSLNEKKRKRIEVI-ESTKLKKSESST 507 (636)
Q Consensus 439 i~~F~~~~v~~~~~~~-~~m~i~v~~vk~~~Lp~~v~~~-~~~p~~~~~~~~~kr~~~~-~~~~~~~~~~~~ 507 (636)
+++|. +.|+.|++++ .+|.|.|+.+|+.+||+-||.+ +.||.. ++||||.... +..+.+++.+|+
T Consensus 484 ~~EF~-elcr~~d~gd~~~mni~v~~~K~~dlpdeVF~~geerPs~---~sKR~~~dt~h~t~q~~r~~~st 551 (552)
T COG5186 484 VKEFI-ELCREYDEGDASGMNIEVNSLKRKDLPDEVFYPGEERPSN---SSKRRRVDTAHSTEQLKRQKVST 551 (552)
T ss_pred HHHHH-HHHHHhhccccceeeeehhhccccCCchhhcCCCccCccc---ccccccchhhhhHHHHhhhhccC
Confidence 99999 9999998876 4899999999999999999984 556644 4566664444 444555555554
No 4
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=100.00 E-value=3.2e-72 Score=573.00 Aligned_cols=248 Identities=57% Similarity=0.998 Sum_probs=199.6
Q ss_pred CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658 1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG 80 (636)
Q Consensus 1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG 80 (636)
|+|||+++||++|++.+++|+++|+++++|||+||.++|++||+.|++++++|++ +
T Consensus 7 t~PIS~~~Pt~~Dl~~s~~L~~~l~~~~~~es~ee~~~R~~vl~~L~~iv~~wv~----------~-------------- 62 (254)
T PF04928_consen 7 TKPISLAPPTEKDLKRSASLEEFLKDYGLFESEEEEQKREEVLRKLQQIVKEWVK----------Q-------------- 62 (254)
T ss_dssp T--S------HHHHHHHHHHHHHHHHCT-S--HHHHHHHHHHHHHHHHHHHHHHH----------H--------------
T ss_pred CCCccCCCCChhhHHhHHHHHHHHHHcCCCCChHHHhHHHHHHHHHHHHHHHHHH----------h--------------
Confidence 7899999999999999999999999999999999999999999999999999986 2
Q ss_pred eeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCC
Q 006658 81 SYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPE 160 (636)
Q Consensus 81 Sy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~ 160 (636)
...++|+
T Consensus 63 -------------------------------------------------------------------------~~~~~p~ 69 (254)
T PF04928_consen 63 -------------------------------------------------------------------------ALPRVPE 69 (254)
T ss_dssp -------------------------------------------------------------------------SSSSB-T
T ss_pred -------------------------------------------------------------------------hhcCCCc
Confidence 5578999
Q ss_pred ccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC
Q 006658 161 DLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240 (636)
Q Consensus 161 ~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~ 240 (636)
++++.++++|++||++|++||||+||+++|+++||+.+.||.++||||+|||+||||||++||||||+||||||++||+|
T Consensus 70 ~l~~~~~~~l~~ld~~s~~sLnG~Rv~~~il~~Vp~~~~Fr~~lR~IK~WAk~RGIYsn~~GylGGI~waILvArvcql~ 149 (254)
T PF04928_consen 70 DLDLLDDDPLRNLDEASVRSLNGVRVTDYILRLVPNQETFRTALRFIKLWAKRRGIYSNVFGYLGGIHWAILVARVCQLY 149 (254)
T ss_dssp T--TT-GGGGTT--HHHHHHHHHHHHHHHHHCTSS-HHHHHHHHHHHHHHHHHTT-B-CCCTSB-HHHHHHHHHHHHHHS
T ss_pred ccccCCchhhhCCCHhhccCcccccHHHHHHHHCCCHHHHHHHHHHHHHHHHHccccchhhccchHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHH
Q 006658 241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEE 320 (636)
Q Consensus 241 Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~E 320 (636)
||+++++||.+||.+|++|+|++||+++++.++.+++++|+|+.+.+|+.|+|||+||+||+||+|+|||.+|+++|++|
T Consensus 150 Pn~~~~~ll~~FF~~ys~W~W~~PV~l~~~~~~~~~~~~w~p~~~~~~~~~~MpIiTP~yP~~Nst~nVt~st~~~i~~E 229 (254)
T PF04928_consen 150 PNASPSTLLSRFFQIYSQWDWPNPVVLDPIEDGPLGFKVWNPRLYPRDRRHLMPIITPAYPSMNSTYNVTRSTLRIIREE 229 (254)
T ss_dssp TT--HHHHHHHHHHHHHCS-TTS-EESS-----SSSCGS--TTT-HHHHC-SS-EE-SSSS--BTTTT--HHHHHHHHHH
T ss_pred ccccccchHHHHHHHhcCCCCCCceeecccccCcccccCCCCCCCCCCcccceeEccCCCCccccccccCHHHHHHHHHH
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcccccccc
Q 006658 321 FQRAKELCEEIEAGKRTWITLFEPY 345 (636)
Q Consensus 321 f~RA~~il~~i~~~~~~W~~Lf~~~ 345 (636)
|+||+++++++..++.+|++||+|+
T Consensus 230 f~ra~~i~~~~~~~~~~W~~L~e~~ 254 (254)
T PF04928_consen 230 FQRAHEILSEILKGGASWSDLFEPH 254 (254)
T ss_dssp HHHHHHHHHHHHTTSS-HHHCT---
T ss_pred HHHHHHHHHHHHcCCCCHHHHcCCC
Confidence 9999999999999999999999985
No 5
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]
Probab=99.98 E-value=3.3e-31 Score=286.41 Aligned_cols=261 Identities=25% Similarity=0.329 Sum_probs=211.2
Q ss_pred hhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCc
Q 006658 14 VISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKD-WIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTD 92 (636)
Q Consensus 14 ~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~-w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SD 92 (636)
..++.+|.+++. .+.|+.||.+.|...|++|++++++ |. ++.+++|||+.+|+++|+||
T Consensus 55 ~~lt~el~~~y~--~I~ps~eEl~~R~~~leklr~~lk~~~p------------------da~l~vFGS~~t~L~l~~SD 114 (482)
T COG5260 55 DELTSELLEFYD--YIAPSDEELKRRKALLEKLRTLLKKEFP------------------DADLKVFGSTETGLALPKSD 114 (482)
T ss_pred HHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHHhCC------------------ccceeEecccccccccCccc
Confidence 466777777776 5889999999999999999999874 42 36899999999999999999
Q ss_pred eeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEE--cCeeeeEeeeecccCCCCCccCccchhhc
Q 006658 93 IDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKF--NGVSVDLLYAQLQFSVIPEDLDSLQDSLL 170 (636)
Q Consensus 93 ID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~~p~~l~l~~d~lL 170 (636)
||++++.+....++..=-..++..|.......++.+|..|+||||||.. .|+.|||+|++.
T Consensus 115 iDl~I~s~~~~~~et~~~~~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~----------------- 177 (482)
T COG5260 115 IDLCIISDPRGYKETRNAGSLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNT----------------- 177 (482)
T ss_pred ccEEEecCCccccccccHHHHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCch-----------------
Confidence 9999999766554311111455555555677889999999999999998 499999999984
Q ss_pred cccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhCCC--------
Q 006658 171 HNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPN-------- 242 (636)
Q Consensus 171 ~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~Pn-------- 242 (636)
+|++.+..++.++-..+++|+|+.+||+||++|.+++...|+|+||++.+||..++|++|.
T Consensus 178 -----------~~~~~akl~~~~~~~~P~lrpLvliIKhwl~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~~~~~~~~ 246 (482)
T COG5260 178 -----------NGIVNAKLIRSYLKEDPRLRPLVLIIKHWLKRRALNDVATGTLSSYTISCMVLSFLQMHPPFLFFDNGL 246 (482)
T ss_pred -----------hHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHhhcccccCcchhhhhHHHHHHHHHhCCccccccccc
Confidence 6889999999999999999999999999999999999999999999999999999999981
Q ss_pred ----------CChhhHHHHHHHHhc-cCCCCCceeecccCCC-C-C--CCcccCCCCCccCCCccceeeCCC-CCCCCcc
Q 006658 243 ----------ALPNVLVSRFFKIFA-HWKWPNPVMLCPIQYQ-A-M--PHHVWDPRSNQRDRKHLMPIITPS-YPCTNSS 306 (636)
Q Consensus 243 ----------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~~~~g-~-l--~~~~W~p~~~~~Dr~~~MpIiTP~-~P~~Nsa 306 (636)
.+++.|+.+||++|+ .|+|..-++... +| . + ..+.|--... + ..++|++|. .+..++
T Consensus 247 ~~~l~~~~~~~~lgvLf~dFf~~yG~~f~Y~~~~~si~--~g~~~~~K~e~g~~~~~~---p-~~LsiqdP~td~n~~~- 319 (482)
T COG5260 247 LSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSIN--SGDFYLPKYEKGWLKPSK---P-NSLSIQDPGTDRNNDI- 319 (482)
T ss_pred cchhhccccccccchHHHHHHHHhccccChhheEEEec--CCceeeehhhcccccccC---C-CcEeecCCCCCccccc-
Confidence 257899999999999 799998544322 22 1 1 1134542221 2 579999999 554444
Q ss_pred cccChhhHHHHHHHHHHHHHHHHH
Q 006658 307 YNVSSTTLRIMQEEFQRAKELCEE 330 (636)
Q Consensus 307 ~nVs~stl~~I~~Ef~RA~~il~~ 330 (636)
....-+++.|+.+|.+|.+++.+
T Consensus 320 -~a~s~~ik~i~~~F~~aF~lls~ 342 (482)
T COG5260 320 -SAVSFNIKDIKAAFIRAFELLSN 342 (482)
T ss_pred -ccccchHHHHHHHHHHHHHHHhh
Confidence 33556899999999999999997
No 6
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase that specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analogue at 2.5 A resolution has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The C-terminal domain unexpectedly folds into a compact domain reminiscent of the RNA-recognition motif fold. The three invariant aspartates of the catalytic triad ligate two of the three active site metals. One of these metals also contacts the adenine ring. Furthermore, conserved, catalytically important residues contact the nucleotide. These contacts, taken together with metal coordination of the adenine base, provide a structural basis for ATP selection by poly(A) polymerase. ; GO: 0003723 RNA binding, 0004652 polynucleotide adenylyltransferase activity, 0043631 RNA polyadenylation, 0005634 nucleus; PDB: 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A 1Q79_A 1Q78_A 1F5A_A.
Probab=99.97 E-value=1e-31 Score=256.11 Aligned_cols=133 Identities=37% Similarity=0.747 Sum_probs=106.6
Q ss_pred ccccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeCCCCcC-----------------CCCCC
Q 006658 346 HFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFS-----------------ENSVK 408 (636)
Q Consensus 346 ~FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~P~~f~-----------------~~~~~ 408 (636)
+||.+|||||+|+|++.+++++.+|.||||||||.||.+||+. .++..|||||+.|. .....
T Consensus 1 ~FF~~Yk~yl~I~~~a~~~~~~~~W~G~VESrlR~Lv~~LE~~-~~i~~ahp~pk~f~~~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T PF04926_consen 1 DFFSRYKHYLQIDVSAKNEEDHRKWSGWVESRLRHLVQKLERN-PGIKLAHPFPKRFERVYECSEQADENNDEEEEEDPE 79 (157)
T ss_dssp -HHHH-SEEEEEEEEECSHHHHHHHHHHHHCCHHHHHHHHHTS-TTEEEEEE-SS-EEEEEE-EBECTTCTTSHHCHCTS
T ss_pred ChhHhCceeEEEEEEeCCHHHHHHhhhHHHHHHHHHHHHHccC-CCeeEecCCCCccccccccccccccccccccccCCC
Confidence 6999999999999999999999999999999999999999995 56888999999998 12334
Q ss_pred CcceEEEEEeeeecCCCCCCCCcccchHHHHHHHHHhhhhhccc---cCCCcEEEEEEecCCCCCCccCCCCCCC
Q 006658 409 SSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSS---WKQGMQIHVSHLRCQDIPDFVFPGGVRP 480 (636)
Q Consensus 409 ~~~~~~ffIGL~~~~~~~~~~~~~~dl~~~i~~F~~~~v~~~~~---~~~~m~i~v~~vk~~~Lp~~v~~~~~~p 480 (636)
..|+++|||||+++.......++++||+.++++|+ +.|++|++ +.++|+|+|+|||+++||++||+++.++
T Consensus 80 ~~~~~~~fIGL~~~~~~~~~~~~~~dL~~~i~~F~-~~v~~~~~~~~~~~~m~i~i~~vk~~~Lp~~v~~~~~~r 153 (157)
T PF04926_consen 80 NEYTSSFFIGLEFDSKESNEGSKKLDLTYAIQEFK-DLVRNWEKYYYDEEGMDISISHVKRSQLPDFVFEEGEKR 153 (157)
T ss_dssp EEEEEEEEEEEEE--SSSS---S-EE-HHHHHHHH-HHHHCCCCTTC-TTTEEEEEEEEEHHHHGGGGS-TTS--
T ss_pred ceeEEEEEEEEEECCCCccccceEEehHHHHHHHH-HHHHhhhccccCCCccEEEEEEechHHCChhhhcccCcC
Confidence 67999999999997654433346799999999999 99999987 3568999999999999999999988743
No 7
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]
Probab=99.96 E-value=5.5e-29 Score=274.18 Aligned_cols=267 Identities=23% Similarity=0.324 Sum_probs=216.2
Q ss_pred ChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCC
Q 006658 10 TVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVK-DWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAG 88 (636)
Q Consensus 10 t~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk-~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~ 88 (636)
.+.-..++++++.+++ .+.||.+|.+.|..+++++++.|+ .| .+++|++||||.+|+++
T Consensus 57 ~~~s~~l~~eI~~fv~--~l~pt~~e~~~R~~~~~~i~~~v~~~~------------------~~a~v~~FGS~~tglyL 116 (514)
T KOG1906|consen 57 NLVSERLRNEILDFVQ--YLIPTPEEIEVRSELVEKIRDVVKQKW------------------PDASVYVFGSVPTGLYL 116 (514)
T ss_pred chhHHHHHHHHHHHHH--HhcCCchHHHHHHHHHHHHHHHHHHhc------------------ccceeEEeeeeeccccc
Confidence 5556778889999998 589999999999999999999887 23 25999999999999999
Q ss_pred CCCceeEEEecCCCCCchhhHHHHHHHHHhc--CCCccceeeecCCcccEEEEEE--cCeeeeEeeeecccCCCCCccCc
Q 006658 89 PSTDIDALCVGPCYATRHDDFFGKLFRMLQE--TPLVEDLTPVPDARVPVIKFKF--NGVSVDLLYAQLQFSVIPEDLDS 164 (636)
Q Consensus 89 p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~--~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~~p~~l~l 164 (636)
|+||||+++..+.+..++ +....+.-++.. ...-..+..|..|+||||||+. .+|.|||+|++.
T Consensus 117 P~sDIDl~v~~~~~~~~e-~~~~~~~l~~~~e~~~~~~~v~~v~karvpiik~~d~~s~i~vDISFn~~----------- 184 (514)
T KOG1906|consen 117 PDSDIDLVVLSKFLNDKE-DRAVKLELALELEEDNSAFHVKVVQKARVPIIKFKDPVSNIHVDISFNQT----------- 184 (514)
T ss_pred cccceEEEEecccccCch-hhHHHHHHHHhhhhccccceEEEeeeeeeeeEEeecCccceEEEeeeccc-----------
Confidence 999999999999777665 555555544443 3344567889999999999997 599999999984
Q ss_pred cchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhCCCC-
Q 006658 165 LQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA- 243 (636)
Q Consensus 165 ~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~Pn~- 243 (636)
|||+.++.|..++.+.+.+|.++..+|.|...|++++...|++++|++++||..++|++|..
T Consensus 185 -----------------~G~~aa~~i~~~~~~~p~~~~lvlvlk~fl~~r~ln~v~tGgisSyal~~Lv~~fl~l~~~~~ 247 (514)
T KOG1906|consen 185 -----------------NGVKAAKFIKDFLRDHPFLRSLVLVLKQFLYERRLNGVHTGGISSYALELLVLSFLQLHPRSK 247 (514)
T ss_pred -----------------CchhHHHHHHHHHhcCccchhHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999964
Q ss_pred --------ChhhHHHHHHHHhc-cCCCCC-ceeecccCCCCCC--CcccCCCCCccCCCccceeeCCCCCCCCcccccCh
Q 006658 244 --------LPNVLVSRFFKIFA-HWKWPN-PVMLCPIQYQAMP--HHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSS 311 (636)
Q Consensus 244 --------s~~~LL~~FF~~Ys-~wdW~~-pV~l~~~~~g~l~--~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~ 311 (636)
.++.||.+||++|+ +|++.. .|.+....+ ..+ ...|- .+...+...+.|+||..|..+.++ +.
T Consensus 248 s~~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~g~-~~~~~~~~~~--~~~~~~~~~LsieDP~~P~ndigr--~s 322 (514)
T KOG1906|consen 248 SGRLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLGGE-YVSKELTGFF--NNSLERPGSLSIEDPVDPTNDIGR--SS 322 (514)
T ss_pred CCccchhcccchHHHHHHHHhccccCchhhceeccCCcc-cccHHhhhhh--cccccCCCccccCCCCCccccccc--cc
Confidence 36789999999999 677665 333221111 111 11121 112234557999999999777764 33
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 006658 312 TTLRIMQEEFQRAKELCEE 330 (636)
Q Consensus 312 stl~~I~~Ef~RA~~il~~ 330 (636)
..+..|+.+|..|+..|..
T Consensus 323 ~~~~~v~~~F~~af~~l~~ 341 (514)
T KOG1906|consen 323 FNFSQVKGAFAYAFKVLTN 341 (514)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 5688999999999999986
No 8
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=99.79 E-value=5.2e-19 Score=159.05 Aligned_cols=110 Identities=41% Similarity=0.729 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCC-CCchhhHHHHHHHH
Q 006658 38 GRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCY-ATRHDDFFGKLFRM 116 (636)
Q Consensus 38 ~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~-v~r~~~FF~~l~~~ 116 (636)
.|++++++|++++++|. .++++++|||+++|+++|+||||+++..|.. .... +++..+.+.
T Consensus 1 ~r~~i~~~l~~~i~~~~-----------------~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~-~~l~~l~~~ 62 (114)
T cd05402 1 KREEVLDRLQELIKEWF-----------------PGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDRE-DFLRKLAKL 62 (114)
T ss_pred CHHHHHHHHHHHHHHHC-----------------CCCEEEEecccccCCCCCCCCeeEEEEeCCCCccHH-HHHHHHHHH
Confidence 38899999999999872 2588999999999999999999999999986 3333 899999999
Q ss_pred HhcCCCccceeeecCCcccEEEEEEc--CeeeeEeeeecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhh
Q 006658 117 LQETPLVEDLTPVPDARVPVIKFKFN--GVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSL 193 (636)
Q Consensus 117 L~~~~~v~~l~~I~~A~VPIIKf~~~--GI~iDLsfa~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~l 193 (636)
|++...+.++..|.+|+||||||.+. |+.|||+|++. ||++++++|..+
T Consensus 63 l~~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~~~~----------------------------~g~~~s~li~~y 113 (114)
T cd05402 63 LKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFNNL----------------------------NGIRNTKLLRAY 113 (114)
T ss_pred HHhCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEcccc----------------------------hHHHHHHHHHHh
Confidence 99988888999999999999999998 99999999973 688888887765
No 9
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.4e-16 Score=178.20 Aligned_cols=250 Identities=21% Similarity=0.320 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEec-CCC-CC---
Q 006658 30 FASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVG-PCY-AT--- 104 (636)
Q Consensus 30 ~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~-P~~-v~--- 104 (636)
.+...+...|...+..++.++..-. + .....+..|||..+|+....+|+| +|+. ... ..
T Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~~~---------p------~~~~~~~~~gs~~~~~~~~~~d~d-~~~~~~~~~~~~~~ 189 (596)
T KOG2277|consen 126 KLPHSDVKTRKLILDKLRALASLLF---------P------DSILSLYLFGSSDLGLGERSSDLD-LCVDFTSSFLSFEK 189 (596)
T ss_pred CCCccccchHHHHHHHHHHHHHHhc---------C------CCcceeeccCcccccccccccCcc-eeecccccccccch
Confidence 3455566666666677666654321 1 122336799999999999999999 5543 221 11
Q ss_pred -chhhHHHHHHHHHhcCCC--ccceeeecCCcccEEEEEE--cCeeeeEeeeecccCCCCCccCccchhhccccchhhhh
Q 006658 105 -RHDDFFGKLFRMLQETPL--VEDLTPVPDARVPVIKFKF--NGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVL 179 (636)
Q Consensus 105 -r~~~FF~~l~~~L~~~~~--v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~~p~~l~l~~d~lL~~lde~s~r 179 (636)
....++..+.++|....+ +..+..|..|+|||||+.+ .++++|+++.+..
T Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~A~vPiik~~~~~~~~~~d~s~~n~~------------------------- 244 (596)
T KOG2277|consen 190 IKGLEILKLLAKCLASLLEEGVREVQQILSARVPIIKFNDSGSGLECDLSVNNSD------------------------- 244 (596)
T ss_pred hhhHHHHHHHHHHHHhccccccceeeeeeecCCCEEEecCCCCCCceeeeeccch-------------------------
Confidence 112566778888887543 8889999999999999965 4999999998742
Q ss_pred hcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccc-hHHHHHHHHHHHhhCCC----------------
Q 006658 180 SLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLG-GINWALLVARVCQLYPN---------------- 242 (636)
Q Consensus 180 SLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LG-GiswaiLVa~vcQl~Pn---------------- 242 (636)
|.+++..+......+.+|+.|...||+||+++++++...|.+. +|++.+||++++|.++.
T Consensus 245 ---~~~nS~ll~~~~~~d~r~~~L~~~vk~wa~~~~~~d~~~g~~~s~ysl~lmvi~fLq~~~~~ilp~l~~l~~~~~~~ 321 (596)
T KOG2277|consen 245 ---AILNSQLLRNYSEIDPRVRPLVLLVKHWAKEKGLNDAKPGGLNSSYSLTLMVIHFLQTLSPPILPPLSKLLPESDSN 321 (596)
T ss_pred ---hhhhhHHHHHhHhcCCCcchHhHHHHHHHHhccCCCCCCCceeccccHHHHHHHHHHhcCCcCCCchhhhchhcccc
Confidence 3445556666666677999999999999999999999999998 69999999999998641
Q ss_pred ---------------------------CChhhHHHHHHHHhc-cCCCCCcee-ecccCCCCCCCcccCCCCCccCCCccc
Q 006658 243 ---------------------------ALPNVLVSRFFKIFA-HWKWPNPVM-LCPIQYQAMPHHVWDPRSNQRDRKHLM 293 (636)
Q Consensus 243 ---------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~-l~~~~~g~l~~~~W~p~~~~~Dr~~~M 293 (636)
.+++.|+..||.||+ .|||++-++ ++.... +. ..|.. .....+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~yy~~~Fdf~~~~I~~r~~~~--l~-~~~~~-----~~~~~l 393 (596)
T KOG2277|consen 322 DKPVVKKKVLCSFLRVFQRNPSNSQNTGSLGELLLGFFSYYASLFDFRKNAISIRRGRA--LK-RAKKI-----KSKKFL 393 (596)
T ss_pred cccchhhhhhhccccccccccccccccchHHHHHHHHHHHHhhhcccccceeeeeeccc--cc-ccchh-----hhccce
Confidence 024689999999999 899999655 332111 11 00111 112359
Q ss_pred eeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHH
Q 006658 294 PIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEI 331 (636)
Q Consensus 294 pIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i 331 (636)
.|++|+....|.+..++...+.+|+.+|+....++...
T Consensus 394 ~i~dp~~~~~n~~~~~~~~~~~~i~~~~~~~~~~~~~~ 431 (596)
T KOG2277|consen 394 CIEDPFEVSHNADAGVTLKVLLLIQDEFQESRRVFKDV 431 (596)
T ss_pred eeccccccccCccccchHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999874
No 10
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=99.57 E-value=1.4e-12 Score=141.85 Aligned_cols=341 Identities=19% Similarity=0.211 Sum_probs=210.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCC-CCceeEEEec
Q 006658 21 EKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGP-STDIDALCVG 99 (636)
Q Consensus 21 ~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p-~SDID~l~v~ 99 (636)
.+.|+ .+-||+||.++-+.+.++|...+++++.+. + ..++++.|||++-|.+++ +||||++++.
T Consensus 3 ~~vl~--~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e~----~---------~~~~v~~~GS~ArgT~L~G~sDIDIfi~f 67 (408)
T TIGR03671 3 EEVLE--RIKPTEEEREKLKKVADELIARLEEIIEEL----G---------VDAEVVLVGSYARGTWLKGDRDIDIFILF 67 (408)
T ss_pred HHHhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHhc----C---------CcceEEEEeeEecCCccCCCCceeEEEEe
Confidence 45555 478999999999999999999988877532 1 247999999999999999 8999999999
Q ss_pred CCCCCchhhH---HHHHHHHHhcC-CCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCCccCccch-hhccccc
Q 006658 100 PCYATRHDDF---FGKLFRMLQET-PLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQD-SLLHNLD 174 (636)
Q Consensus 100 P~~v~r~~~F---F~~l~~~L~~~-~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~~l~l~~d-~lL~~ld 174 (636)
|....++ ++ ...+...+.+. +.. ....|-=|-++..+.|++|||.=|-- +.+. .+.-.+|
T Consensus 68 ~~~~~~e-~l~~~gl~i~~~~~~~~~~~----~~~yaeHpYv~~~~~G~~VDiVPcy~----------v~~g~~~~taVD 132 (408)
T TIGR03671 68 PKDTSRE-ELEEYGLEIGHEVLKRGGNY----EERYAEHPYVSGEIEGFEVDVVPCYK----------VESGEEIISAVD 132 (408)
T ss_pred CCCCCHH-HHHHHHHHHHHHHHhhCCCH----hheeccCceEEEEEccEEEEEEeeEE----------ccCcCeeecccc
Confidence 9877775 33 12223333221 111 14567789999999999999984421 2221 1111222
Q ss_pred hhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCC--CCcccchHHHHHHHHHHHhhCCCCChhhHHHHH
Q 006658 175 EQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSN--AMGFLGGINWALLVARVCQLYPNALPNVLVSRF 252 (636)
Q Consensus 175 e~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn--~~G~LGGiswaiLVa~vcQl~Pn~s~~~LL~~F 252 (636)
-. ..-+++++.-.- +.++..+|.+|.|+|.-|+|++ +.++++||..=||++++ -+-..++..+
T Consensus 133 Rt-------p~H~~fv~~rl~--~~~~d~VRLlK~f~k~igvYGsE~~~~GFSGYl~ELLv~~y------G~F~~~l~~a 197 (408)
T TIGR03671 133 RT-------PFHTRYVLERLD--GKLRDDVRLLKQFLKGIGVYGSELKTRGFSGYLCELLVIHY------GSFENVLKAA 197 (408)
T ss_pred Cc-------hHHHHHHHHhhh--hhHHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh------CCHHHHHHHH
Confidence 10 112456665542 3488999999999999999975 46889999999999994 2222333322
Q ss_pred HHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 006658 253 FKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIE 332 (636)
Q Consensus 253 F~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i~ 332 (636)
++ |..++.++....+.. . . ...+-|+||.+|..|+|.++|..++..+...-++++ ++
T Consensus 198 ----~~--wk~~~~id~~~~~~~--------~-f---~~PlvViDPvDp~RNVAaalS~~~~~~fv~aar~fl---~~-- 254 (408)
T TIGR03671 198 ----SK--WKPGVVIDIEEHGTK--------K-F---DDPLVVIDPVDPKRNVAAALSLENLARFILAARMFL---KN-- 254 (408)
T ss_pred ----Hh--cCCCeEEecCccccc--------c-C---CCCEEEeCCCCCcchHHHHcCHHHHHHHHHHHHHHH---HC--
Confidence 23 555677643211111 1 1 246999999999999999999998888876555543 22
Q ss_pred cCCCCcccccccc-----ccc----cccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeCCCCcC
Q 006658 333 AGKRTWITLFEPY-----HFF----GSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFS 403 (636)
Q Consensus 333 ~~~~~W~~Lf~~~-----~FF----~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~P~~f~ 403 (636)
.=..+|.|. ++- .+-.+.+.|.....+.-+= ..-|-++--.+.|...||++...++....|-
T Consensus 255 ----Ps~~fF~p~~~~~~~~~~~l~~r~t~~~~~~f~~p~~v~D-il~pQl~r~~~~i~~~L~~~gF~v~r~~~~~---- 325 (408)
T TIGR03671 255 ----PSLEFFFPPEIEPEEFLERLERRGTTLLAIVFRTPDVVDD-ILYPQLERSGRSLVKLLEREGFEVLRYGVWA---- 325 (408)
T ss_pred ----CCHHHcCCCCCChHHHHHHHhhcCcEEEEEEeCCCCCCcc-chhHHHHHHHHHHHHHHHHCCCEEEEeeeec----
Confidence 112334322 111 1222444444444442222 2337777777788888887544455555552
Q ss_pred CCCCCCcceEEEEEeeeecCC--CCCCCCcccchHHHHHHHH
Q 006658 404 ENSVKSSSQCHYFMGLGRKQG--VSPQDGEKFDMRLTVEEFK 443 (636)
Q Consensus 404 ~~~~~~~~~~~ffIGL~~~~~--~~~~~~~~~dl~~~i~~F~ 443 (636)
+++ .+..++=|....- .....+-.+.-+.....|.
T Consensus 326 ~~~-----~~~l~~el~~~~lp~~~~h~GPpv~~~~~a~~F~ 362 (408)
T TIGR03671 326 DEN-----TCYLLLELESAELPRVKLHVGPPVWVRDHAEKFI 362 (408)
T ss_pred CCC-----eEEEEEEeeccccCCceeeeCCCccchhHHHHHH
Confidence 211 1344444443220 0001233466656677888
No 11
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.55 E-value=5.2e-12 Score=139.03 Aligned_cols=308 Identities=19% Similarity=0.209 Sum_probs=193.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCC-CCceeEEEe
Q 006658 20 LEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGP-STDIDALCV 98 (636)
Q Consensus 20 L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p-~SDID~l~v 98 (636)
+.+.|+ .+-||+||.++-.++.+.|...+++++.+ .+. +++++.+|||+-|.+++ +||||+.++
T Consensus 3 ~~evl~--~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~----~~~---------~~~V~l~GS~ArgT~L~GdsDIDIFv~ 67 (447)
T PRK13300 3 LEEVLE--RIKPTEEEREKLKKVAEELIERLEEAIKE----LGL---------DAEVELVGSTARGTWLSGDRDIDIFVL 67 (447)
T ss_pred HHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCC---------ceEEEEEeeecCCcccCCCCceeEEEE
Confidence 445565 47899999999999999999888877653 221 38999999999999999 789999999
Q ss_pred cCCCCCchhhH----HHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCCccCccch-hhcccc
Q 006658 99 GPCYATRHDDF----FGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQD-SLLHNL 173 (636)
Q Consensus 99 ~P~~v~r~~~F----F~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~~l~l~~d-~lL~~l 173 (636)
.|....++ ++ .....+.++..-.-.+++ -|-=|-++..+.|++|||.=|- ++.+. .+.-.+
T Consensus 68 fp~~~~~e-~L~~~gl~i~~~~~~~~~~~~~~~---yaeHpyv~~~~~G~~VDiVPcy----------~v~~~~~~~saV 133 (447)
T PRK13300 68 FPKDTSRE-ELEEKGLEIGKEVAKELLGDYEER---YAEHPYVTGEIDGFEVDIVPCY----------KVESGEEIISAV 133 (447)
T ss_pred eCCCCCHH-HHHHHHHHHHHHHHHhhCCcceee---eccCceEEEEECCEEEEEEeeE----------EccCcCcccccc
Confidence 99877764 22 222223333311112333 4888999999999999998542 11111 111222
Q ss_pred chhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCC--CCcccchHHHHHHHHHHHhhCCCCChhhHHHH
Q 006658 174 DEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSN--AMGFLGGINWALLVARVCQLYPNALPNVLVSR 251 (636)
Q Consensus 174 de~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn--~~G~LGGiswaiLVa~vcQl~Pn~s~~~LL~~ 251 (636)
|-. ..-+++|+.-.- +.++..+|.+|.|+|.-|+|++ +.++++||..=||++++ -+-..+|..
T Consensus 134 DRt-------p~H~~fv~~rl~--~~~~d~VRLlK~f~k~~gvYGsE~k~~GFSGYl~ELLv~~y------G~F~~~l~~ 198 (447)
T PRK13300 134 DRT-------PFHTKYVKERLK--GKLEDEVRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHY------GSFENVLKA 198 (447)
T ss_pred cCc-------hHHHHHHHHhhh--hhHHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh------CCHHHHHHH
Confidence 210 123566665542 3488999999999999999975 56889999999999995 233333333
Q ss_pred HHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHH
Q 006658 252 FFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEI 331 (636)
Q Consensus 252 FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i 331 (636)
+ ++| .-++.+.....+.. ... ...+-|+||.+|..|+|.++|..++..+... |.+.|++
T Consensus 199 a----~~w--~~~~~I~~~~~~~~--------~~f---~~PlvViDPvDp~RNVAaa~S~~~~~~fv~a---ar~fL~~- 257 (447)
T PRK13300 199 A----SKW--KPPVKIDLEKHGKE--------YKF---DDPLVVIDPVDPNRNVAAALSLENLATFILA---AREFLKN- 257 (447)
T ss_pred H----HhC--CCCceEeccccCcc--------ccC---CCCEEEeCCCCCcchHHHHcCHHHHHHHHHH---HHHHHhC-
Confidence 2 334 44455543221110 011 2469999999999999999999888776643 2233433
Q ss_pred HcCCCCccccccccc---------cccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeC
Q 006658 332 EAGKRTWITLFEPYH---------FFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLY 398 (636)
Q Consensus 332 ~~~~~~W~~Lf~~~~---------FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~ 398 (636)
.=...|.|.+ +-.+-.+.+.|.....+.-+=.-| |-++-=.+.|...||+.....+...-|
T Consensus 258 -----Ps~~fF~~~~~~~~~~~~~l~~R~t~~~~v~f~~p~~v~Dil~-pQl~r~~~~i~~~L~~~gF~v~~~~~~ 327 (447)
T PRK13300 258 -----PSLEFFFPSDLSPEEILEELERRGTTVLALEFPRPDIVEDILY-PQLERSLRSIVKLLEREGFEVLRSGAW 327 (447)
T ss_pred -----CCHHhcCCCCCChHHHHHHHhhcCceEEEEEeCCCCCCccchh-HHHHHHHHHHHHHHHHCCCEEEEeeee
Confidence 1222333322 111122555555555442222234 777777778888888754444444333
No 12
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.6e-08 Score=109.69 Aligned_cols=307 Identities=18% Similarity=0.199 Sum_probs=190.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCC-CCceeEE
Q 006658 18 KELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGP-STDIDAL 96 (636)
Q Consensus 18 ~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p-~SDID~l 96 (636)
..|.+.|+. +-||+||.++=+.+.+.|...+++- ++++|+ ++.+...||++=|.|++ +.|||+.
T Consensus 5 ~~l~evl~~--i~P~~eE~~~~~~~~e~l~~~~~~~----~~e~~~---------~aev~lVGS~AkgTwL~gd~DIDvF 69 (443)
T COG1746 5 EVLEEVLKR--IKPTEEERKKLKEVAEELRERINEI----IEELGI---------DAEVVLVGSYAKGTWLRGDHDIDVF 69 (443)
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHH----HHhcCC---------cceEEEEeecccCcccCCCcceeEE
Confidence 345666664 6799999998888888887777654 344554 48899999999999999 7999999
Q ss_pred EecCCCCCchhhH----HHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCCccCccchh-hcc
Q 006658 97 CVGPCYATRHDDF----FGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDS-LLH 171 (636)
Q Consensus 97 ~v~P~~v~r~~~F----F~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~~l~l~~d~-lL~ 171 (636)
|..|....++ .. .......|.+ .+ -.+.-|-=|-+.-.++|+++|+.=|-.. .+.. +.-
T Consensus 70 i~Fp~d~~~e-el~~~GL~ig~~~l~~-~~----~~~~YAeHPYV~g~v~G~eVDvVPCy~v----------~~~~~~~s 133 (443)
T COG1746 70 IAFPKDTSEE-ELEEKGLEIGREVLKR-GN----YEERYAEHPYVTGEVDGYEVDVVPCYKV----------EDGEKIIS 133 (443)
T ss_pred EECCCCCCHH-HHHHHHHHHHHHHhcC-Cc----hhhhhccCCeeEEEEccEEEEEEecccc----------cCcccccc
Confidence 9999987775 22 2223333442 11 1245788899999999999999855421 1111 122
Q ss_pred ccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCC--CcccchHHHHHHHHHHHhhCCCCChhhHH
Q 006658 172 NLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNA--MGFLGGINWALLVARVCQLYPNALPNVLV 249 (636)
Q Consensus 172 ~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~--~G~LGGiswaiLVa~vcQl~Pn~s~~~LL 249 (636)
.+|-.- --+.++..-+-... +.=+|.+|.+.|.=|+|++- .++++||.-=||++++=
T Consensus 134 AVDRTp-------lHt~yv~e~L~~~~--~deVrLLK~FlK~iGvYGaE~rt~GFSGYL~ELLII~yG------------ 192 (443)
T COG1746 134 AVDRTP-------LHTRYVEEHLKGRQ--KDEVRLLKQFLKGIGVYGAELRTQGFSGYLCELLIIHYG------------ 192 (443)
T ss_pred cccCcc-------hhHHHHHHHhcccc--hhHHHHHHHHHhccCccceeeeeccchHHHHHHHHhhhc------------
Confidence 222100 12345554433221 23578999999999999975 68999999999998872
Q ss_pred HHHHHHhccC-CCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHH
Q 006658 250 SRFFKIFAHW-KWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELC 328 (636)
Q Consensus 250 ~~FF~~Ys~w-dW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il 328 (636)
.|=.+.-.. +|.-+++++.-. |..... .| ..|-|+||.+|..|+|.+||..++.++.- .|.+.|
T Consensus 193 -sFe~vl~~a~~wrp~~~ID~~~--------~~~e~f-~d--~PliVvDPVDP~RNVAAalSl~~la~f~~---aar~FL 257 (443)
T COG1746 193 -SFENVLKAASRWRPGKIIDLEG--------HKRERF-ED--EPLIVVDPVDPKRNVAAALSLENLARFVH---AAREFL 257 (443)
T ss_pred -cHHHHHHHHhccCCCeEEeccc--------hhhhcc-CC--CCeEecCCCCCccchhhhcCHHHHHHHHH---HHHHHh
Confidence 333333322 288887776421 211111 22 26999999999999999999877765542 222233
Q ss_pred HHHHcCCCCccccccc---cc-----cccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeC
Q 006658 329 EEIEAGKRTWITLFEP---YH-----FFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLY 398 (636)
Q Consensus 329 ~~i~~~~~~W~~Lf~~---~~-----FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~ 398 (636)
.+ .=...|.| .. ...+-.+-+.+.+-..+.-+= ..-|-++---+.|...||.....++..+-|
T Consensus 258 ~~------PS~efF~p~~~~~~~~~~~~~rgt~v~~l~~~~pd~vdD-ilypQl~r~~~~l~r~Le~~gF~vl~~~~~ 328 (443)
T COG1746 258 KN------PSPEFFFPRKPKPLLLSKLRRRGTHVLALVFPKPDLVDD-ILYPQLERTARSLFRALEEEGFRVLRSGVW 328 (443)
T ss_pred cC------CChhhcCCCCcCcccccchhhcCceEEEEEeCCCCCCcc-hhhHHHHHHHHHHHHHHHHcCCEEeeeeee
Confidence 32 11222221 11 222222334444444443232 234788877788888898854444444444
No 13
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=99.10 E-value=2.7e-08 Score=119.64 Aligned_cols=341 Identities=16% Similarity=0.216 Sum_probs=208.7
Q ss_pred eeecCCCC---CCCceeEEEecCCCCCchhhH------------HHHHHHHH--hcCCCccceee---ecCCcccEEEEE
Q 006658 81 SYRLGVAG---PSTDIDALCVGPCYATRHDDF------------FGKLFRML--QETPLVEDLTP---VPDARVPVIKFK 140 (636)
Q Consensus 81 Sy~lGv~~---p~SDID~l~v~P~~v~r~~~F------------F~~l~~~L--~~~~~v~~l~~---I~~A~VPIIKf~ 140 (636)
||.++... ++-.||+.+..|..+-.++|| ...++..| .+...+.++.. -.+.+-|||.+.
T Consensus 1 S~~l~t~~k~~~~~~VDl~v~mP~~~fq~KDyln~RY~~KRA~YLa~iA~~L~~~~~~~~~~v~~~~~~gd~~kPil~l~ 80 (972)
T PF03813_consen 1 SYALKTMIKSKPNLTVDLAVEMPKSLFQEKDYLNYRYFHKRALYLAYIAAHLQKKKSKLFVDVSFEYLNGDPLKPILVLR 80 (972)
T ss_pred CcccccccccCCCCeeEEEEeCChhhcCchhhccchHHHHHHHHHHHHHHHHhhhccccceeEEEEeCCCCCCCCeEEEE
Confidence 56666654 578999999999865444333 23466667 33333333322 367888999988
Q ss_pred Ec-----C------eeeeEeeeecccCCCCC------------------------ccCccchhhccccchhhhhhcchhh
Q 006658 141 FN-----G------VSVDLLYAQLQFSVIPE------------------------DLDSLQDSLLHNLDEQTVLSLNGCR 185 (636)
Q Consensus 141 ~~-----G------I~iDLsfa~l~~~~~p~------------------------~l~l~~d~lL~~lde~s~rSLNG~R 185 (636)
-. + +.|-|..+.-. ..+|. .-...|..+|.++-. ..
T Consensus 81 p~~~~~~~~~~~~~~~iRi~~~~~~-~~F~~~rl~P~rnnvR~~~~~~~~~~~~~pTP~YNssIL~D~~~--------~~ 151 (972)
T PF03813_consen 81 PKGKKDSDDFSKTKFRIRIIPSIPS-DTFPLSRLAPSRNNVRPSWFDEEDSSSLPPTPHYNSSILEDMLM--------EE 151 (972)
T ss_pred ECCccccccccCCcEEEEEEecCCc-ccCCHHhcCCCCCccCcCcccccccCCCCCCCcchHHHHHHHhH--------HH
Confidence 42 2 44555544311 11110 112334444443311 12
Q ss_pred HHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCC-CcccchHHHHHHHHHHHhh---------CCCCChhhHHHHHHHH
Q 006658 186 VTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNA-MGFLGGINWALLVARVCQL---------YPNALPNVLVSRFFKI 255 (636)
Q Consensus 186 v~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~-~G~LGGiswaiLVa~vcQl---------~Pn~s~~~LL~~FF~~ 255 (636)
-..++.+...+.+.|+.++..+|.||++||+.+.. .|++||+-|+||+++.+|- .+..+.-+|+..+.++
T Consensus 152 ~l~~l~~~~~~~p~f~dA~iLlkvWl~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~f 231 (972)
T PF03813_consen 152 HLKYLHEASKSSPAFRDACILLKVWLRQRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQF 231 (972)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHH
Confidence 23455555666799999999999999999999876 5899999999999999986 3456778999999999
Q ss_pred hccCCC-CCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHcC
Q 006658 256 FAHWKW-PNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAG 334 (636)
Q Consensus 256 Ys~wdW-~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i~~~ 334 (636)
.+..|| .+|+.++...+.......| .+.+.....||. -.+|.+.+++.++++.|+.|-+++.++|++. .
T Consensus 232 LA~~d~~~~~l~~~~~~~~~~~~~~~-------~~~~~~vf~D~s-g~~Nl~~~ms~~s~~~L~~eA~~tl~lL~~~--~ 301 (972)
T PF03813_consen 232 LATTDLSKKPLFFKSSSDSTESLEEF-------HSAFDPVFVDPS-GGLNLLAKMSPSSYEELQHEAKLTLELLDDS--S 301 (972)
T ss_pred HhccccccCceEEecCCCccchhhhh-------hccCCeEEEeCC-CCEEEEEcCCHHHHHHHHHHHHHHHHHhccc--c
Confidence 999999 6688887644211111111 122345556654 4699999999999999999999999999863 2
Q ss_pred CCCcccccc-c-cccccccccEEEEE---EEe----CCcchhhhhhhhhHHHHHHHH-HHHhhccCceeEEeeCCCC---
Q 006658 335 KRTWITLFE-P-YHFFGSFKNYLQIH---IAA----KNAGDFRQWKGWVESRLRQLI-HMIERDMGGVLQCRLYPGD--- 401 (636)
Q Consensus 335 ~~~W~~Lf~-~-~~FF~~Yk~yl~I~---v~a----~~~e~~~~w~G~VESRlR~Lv-~~LE~~~~~~~~~~p~P~~--- 401 (636)
...++.+|- + .++..+|.+++.|. ... ....+...|...++.++-.|+ ..|... .. .++++...
T Consensus 302 ~d~F~~lFl~~~~~~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~raLgdR-~~--~i~v~~~~~~~ 378 (972)
T PF03813_consen 302 DDGFDSLFLTKVDPPALRFDHVLRISPDSLLSSFSPDESLDFLSFSNYLLRKIYRLLKRALGDR-AK--LIRVLRPSQPP 378 (972)
T ss_pred ccchhhhhcccCCcccccCCEEEEEcchhhcccccccccccccchhHHHHHHHHHHHHHHHHHH-HH--eEEEeCCCCCC
Confidence 345777774 3 46678999999991 111 112334444445666666554 455542 22 33333222
Q ss_pred cCCCCC-CCcceEEEEEeeeecCCCCC---CCCcccchHHHHHHHH
Q 006658 402 FSENSV-KSSSQCHYFMGLGRKQGVSP---QDGEKFDMRLTVEEFK 443 (636)
Q Consensus 402 f~~~~~-~~~~~~~ffIGL~~~~~~~~---~~~~~~dl~~~i~~F~ 443 (636)
+.-.+. .........|||..+..... ..|-..|-.....+|.
T Consensus 379 w~i~~~~~~~~~~~l~vGl~ln~~~~~r~vd~GP~a~d~~ea~~FR 424 (972)
T PF03813_consen 379 WSISSKPPKSKPKTLTVGLILNPENAFRLVDRGPSAEDKEEAAAFR 424 (972)
T ss_pred cccCCCCCCCCCceEEEEEEEchhhceeeeeeCcCCcCcHHHHHHH
Confidence 211111 11112378999988651110 1122234456667777
No 14
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=98.39 E-value=1.9e-05 Score=81.39 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=149.9
Q ss_pred EEEeeeeecCCCCCC-CceeEEEecCCCCCchhhHHHHH----HHHHhcCCCccceeeecCCcccEEEEEEc----Ceee
Q 006658 76 LFTFGSYRLGVAGPS-TDIDALCVGPCYATRHDDFFGKL----FRMLQETPLVEDLTPVPDARVPVIKFKFN----GVSV 146 (636)
Q Consensus 76 I~~FGSy~lGv~~p~-SDID~l~v~P~~v~r~~~FF~~l----~~~L~~~~~v~~l~~I~~A~VPIIKf~~~----GI~i 146 (636)
|.-+||+.-|+.+.| -+.|+++++....+. +....+ .+-|+...+=.....|..+.+|.++..+. -...
T Consensus 5 V~rVG~~aKG~ll~Gd~~~~lVv~c~~~PT~--~ll~~v~~~l~e~l~~~~~~e~~~~~~~~~~~~~~~~i~ltSp~~r~ 82 (246)
T smart00572 5 VMRVGSFAKGTLLKGDNVAELVLLCKEKPTS--ELVARLARKLPEQLKAVTEDEALIIVTSTKEPTMEVGILITSPLARV 82 (246)
T ss_pred eEEeeeeccCceecCCCceeEEEEecCCCcH--HHHHHHHHHHHHHHhhcCcccceeeeeccCCCceeEEEEEecccccc
Confidence 567899999999887 568999999776666 344444 44444422112223456777788887763 2223
Q ss_pred eEeeeecccCCCCCccCccchhhccccc-hhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccc
Q 006658 147 DLLYAQLQFSVIPEDLDSLQDSLLHNLD-EQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLG 225 (636)
Q Consensus 147 DLsfa~l~~~~~p~~l~l~~d~lL~~ld-e~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LG 225 (636)
+...+ .+|+++.-.+.. .-+| +.|+.+|-.+|-+..+....-....|+.++|++|-|.++-...+. |.
T Consensus 83 ~~~~~-----~~~~~~~~~~p~--~~ld~~~cl~aLAalRhakWFq~~a~~l~s~~iviRilKd~~~R~~~~~p----L~ 151 (246)
T smart00572 83 ELLIT-----TVPENLRKLDPE--DHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQP----LS 151 (246)
T ss_pred ccccc-----ccCcccccCCcc--ccCCHHHHHHHHHHHHHhHHHHHhccCCcchhhHHHHHHHHHHhcccccc----cc
Confidence 33322 334554322221 1234 468888999999999999998889999999999999998765443 88
Q ss_pred hHHHHHHHHHHHhhCCC-CChhhHHHHHHHHhccCC-CCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCC-C
Q 006658 226 GINWALLVARVCQLYPN-ALPNVLVSRFFKIFAHWK-WPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYP-C 302 (636)
Q Consensus 226 GiswaiLVa~vcQl~Pn-~s~~~LL~~FF~~Ys~wd-W~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P-~ 302 (636)
++.+=+++++.+--... .++++-+.+||++.+.=- +|. + --|.||+.+ .
T Consensus 152 ~w~iELl~~~~i~~~~~~l~~~~a~RR~fe~lAsG~l~p~---------~-------------------~gI~DPce~~~ 203 (246)
T smart00572 152 GWPLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPG---------S-------------------PGLTDPCEKDN 203 (246)
T ss_pred cccHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhccCcCC---------C-------------------CCCcCCCCCCc
Confidence 99999999999863322 468999999999987311 110 0 246789987 8
Q ss_pred CCcccccChhhHHHHHHHHHHHHHHHH
Q 006658 303 TNSSYNVSSTTLRIMQEEFQRAKELCE 329 (636)
Q Consensus 303 ~Nsa~nVs~stl~~I~~Ef~RA~~il~ 329 (636)
.|++...|....+.|...-+.|.+++.
T Consensus 204 ~nv~~~lT~qqrd~It~sAQ~alRl~A 230 (246)
T smart00572 204 TDALTALTLQQREDVTASAQTALRLLA 230 (246)
T ss_pred ccHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999888875
No 15
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=98.26 E-value=1.2e-05 Score=94.60 Aligned_cols=269 Identities=19% Similarity=0.248 Sum_probs=165.7
Q ss_pred CeEEE-EeeeeecCC-CCCCCceeEEEecCCCCCchhhHH------------HHHHHHHhcCCCccceeee---cCCccc
Q 006658 73 NAKLF-TFGSYRLGV-AGPSTDIDALCVGPCYATRHDDFF------------GKLFRMLQETPLVEDLTPV---PDARVP 135 (636)
Q Consensus 73 ~~kI~-~FGSy~lGv-~~p~SDID~l~v~P~~v~r~~~FF------------~~l~~~L~~~~~v~~l~~I---~~A~VP 135 (636)
.+++. ..||+.+|. ..|+.-+|+++..|+..-.++|++ .-+...|.+.+....+... .+-.-|
T Consensus 147 p~~v~~vv~sal~~~~~~P~i~vDvll~mP~e~~~~kd~ln~Ryf~kra~yla~~~~hl~e~l~~~~~~f~~~n~d~~~p 226 (1121)
T KOG2054|consen 147 PAQVTKVVGSALLGTCLRPDISVDVLLTMPREILQQKDGLNQRYFRKRALYLAYLAHHLLEDLLFGSLEFSYTNGDHLKP 226 (1121)
T ss_pred ccccceeeeecccCcccCCcchhhhhhhhhHHhhcCcccccccccchHHHHHHHHHHHHHhccccceeeecccCCccccc
Confidence 34555 556766654 478899999999997543322332 2233334444422222221 244568
Q ss_pred EEEEEEcCeeeeEeeeecccCCCCCcc---------------------------CccchhhccccchhhhhhcchhhHHH
Q 006658 136 VIKFKFNGVSVDLLYAQLQFSVIPEDL---------------------------DSLQDSLLHNLDEQTVLSLNGCRVTD 188 (636)
Q Consensus 136 IIKf~~~GI~iDLsfa~l~~~~~p~~l---------------------------~l~~d~lL~~lde~s~rSLNG~Rv~d 188 (636)
|+.+.-.|-..|+.-.+-..--+|..+ ...|..+|...-.. -..+
T Consensus 227 il~i~~~~~~~~~~~~~~~~~li~~~~~~f~~~kllp~~~~ir~~~e~~e~ppTP~yN~svL~~~~le--------~~~q 298 (1121)
T KOG2054|consen 227 ILLIRPRGKDERLVTVRPPDFLIPCRLLPFKNNKLLPWYNGIRPAGEGSEEPPTPRYNTSVLEDQVLE--------EYLQ 298 (1121)
T ss_pred hhhccccCCccccccccCccccccccccccccccccchhcccCccccCCCCCCCCccchhHHHHHHHH--------HHHH
Confidence 888876655555443332111111111 12222222211100 0123
Q ss_pred HHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHh---hCCCCChhhHHHHHHHHhccCCCCC-c
Q 006658 189 RILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQ---LYPNALPNVLVSRFFKIFAHWKWPN-P 264 (636)
Q Consensus 189 ~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQ---l~Pn~s~~~LL~~FF~~Ys~wdW~~-p 264 (636)
++.+.....+.|+.++-..|.|+++|.. +-..|++||+-|++++++... ++-+.+..+++..-+++.+.|||.. .
T Consensus 299 ~L~K~~s~~~~f~da~~Llk~WlrqRs~-~~~~~gfg~f~~s~lvv~L~s~~ki~~~~S~yqvfR~vl~flat~dlt~~~ 377 (1121)
T KOG2054|consen 299 LLSKTLSSAKGFKDALALLKVWLRQRSL-DIGQGGFGGFLLSALVVYLVSTRKIHTTLSAYQVFRSVLQFLATTDLTVNG 377 (1121)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhh-hcccCcchHHHHHHHHHHHHhcCchhhcchHHHHHHHHHHHHhhhhhhccc
Confidence 3444455668999999999999999921 225688999999999998874 4566778899999999999999987 5
Q ss_pred eeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHcCCCCccccc-c
Q 006658 265 VMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLF-E 343 (636)
Q Consensus 265 V~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i~~~~~~W~~Lf-~ 343 (636)
|.+++-. .+. |....-+..+....++ +.-..|.+.|++.++++++++|.+-++.+|.+... ..++.+| +
T Consensus 378 ~~l~~~~-~s~------~~~~~f~e~~~~~f~D-~s~~~NLc~~mt~s~y~~~q~ea~ltl~lL~~~~~--~~F~~IFmt 447 (1121)
T KOG2054|consen 378 ISLVPSS-PSL------PALADFHEGQLVTFID-SSGHLNLCANMTASTYEQVQEEARLTLMLLDSRAD--DGFSLIFMT 447 (1121)
T ss_pred eEeccCC-CCc------hhhhhhhhcceeeEec-cCCcchhhhhccHHHHHHHHHHHHHHHHHHhhhhh--cCcceeeee
Confidence 6665421 000 0000001112233333 34568999999999999999999999999998643 3577776 5
Q ss_pred ccccccccccEEEEEEE
Q 006658 344 PYHFFGSFKNYLQIHIA 360 (636)
Q Consensus 344 ~~~FF~~Yk~yl~I~v~ 360 (636)
+-+.|.+|.|-+.+..-
T Consensus 448 kip~~~~yDh~l~l~~~ 464 (1121)
T KOG2054|consen 448 KIPVFRAYDHVLHLSPL 464 (1121)
T ss_pred cCCchhhhheeeecccc
Confidence 78899999988877654
No 16
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=97.69 E-value=0.00049 Score=64.28 Aligned_cols=77 Identities=29% Similarity=0.315 Sum_probs=56.2
Q ss_pred CeEEEEeeeeecCCCCC-CCceeEEEecCCCCC----chhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEc--Cee
Q 006658 73 NAKLFTFGSYRLGVAGP-STDIDALCVGPCYAT----RHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFN--GVS 145 (636)
Q Consensus 73 ~~kI~~FGSy~lGv~~p-~SDID~l~v~P~~v~----r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~--GI~ 145 (636)
...++.||||+.|...+ .||||++++.+.... ...++...+.+.|.+...- .......-|.|.+.+. |++
T Consensus 27 ~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~v~v~~~~~~~~ 103 (143)
T cd05400 27 VAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSFAEYGPAELLDELGEALKEYYGA---NEEVKAQHRSVTVKFKGQGFH 103 (143)
T ss_pred ccEEEEEcceeCCCCCCCCCceeEEEEEcCcccccccCHHHHHHHHHHHHHHhcCc---ccccccCceEEEEEEcCCCeE
Confidence 47899999999999977 899999999886543 1136677777788774321 1112355578888887 899
Q ss_pred eeEeeee
Q 006658 146 VDLLYAQ 152 (636)
Q Consensus 146 iDLsfa~ 152 (636)
|||+-+.
T Consensus 104 vDvvP~~ 110 (143)
T cd05400 104 VDVVPAF 110 (143)
T ss_pred EEEEEEe
Confidence 9997654
No 17
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=97.45 E-value=0.00016 Score=56.74 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=24.3
Q ss_pred CeEEEEeeeeecCCCCCCCceeEEEe
Q 006658 73 NAKLFTFGSYRLGVAGPSTDIDALCV 98 (636)
Q Consensus 73 ~~kI~~FGSy~lGv~~p~SDID~l~v 98 (636)
..+++.||||+.|.+.+.||||++|+
T Consensus 17 ~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 17 GYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred CcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 47899999999999999999999987
No 18
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=97.42 E-value=5.2e-05 Score=61.08 Aligned_cols=55 Identities=22% Similarity=0.423 Sum_probs=34.9
Q ss_pred ChhhHHHHHHHHhc-cCCCCCceeecccCCCC-CC--CcccCCCCCccCCCccceeeCCCCCC
Q 006658 244 LPNVLVSRFFKIFA-HWKWPNPVMLCPIQYQA-MP--HHVWDPRSNQRDRKHLMPIITPSYPC 302 (636)
Q Consensus 244 s~~~LL~~FF~~Ys-~wdW~~pV~l~~~~~g~-l~--~~~W~p~~~~~Dr~~~MpIiTP~~P~ 302 (636)
++++||..||+||+ .|||.+-|+... .|. +. ...|... ...+...|+|++|+.|+
T Consensus 1 slg~Ll~~Ff~~Y~~~Fd~~~~~Isi~--~g~~~~k~~~~~~~~--~~~~~~~l~IeDP~~~~ 59 (60)
T PF03828_consen 1 SLGELLLGFFEYYGRKFDYENNVISIR--NGGYFPKEEKNWSKS--RNQRKKRLCIEDPFDPS 59 (60)
T ss_dssp -HHHHHHHHHHHHHHTS-TTTEEEESS--SSSEEEHHHHTGCHC--CCCECSSSEBBESSSTT
T ss_pred CHHHHHHHHHHHhCCcCCCCceEEEec--CCceEEhhhcccccc--ccCCCCeEEEECCCCCC
Confidence 47899999999999 999999655332 222 11 1234421 11234579999999885
No 19
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=97.33 E-value=0.00028 Score=60.61 Aligned_cols=32 Identities=38% Similarity=0.515 Sum_probs=29.5
Q ss_pred CeEEEEeeeeecCCCCCCCceeEEEecCCCCC
Q 006658 73 NAKLFTFGSYRLGVAGPSTDIDALCVGPCYAT 104 (636)
Q Consensus 73 ~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~ 104 (636)
...++.|||++.|.+.|+||||++++.+....
T Consensus 14 ~~~v~lfGS~a~g~~~~~SDIDl~i~~~~~~~ 45 (93)
T PF01909_consen 14 VAEVYLFGSYARGDATPDSDIDLLIILDEPED 45 (93)
T ss_dssp TEEEEEEHHHHHTSSCTTSCEEEEEEESSTSC
T ss_pred CCEEEEECCcccCcCCCCCCEEEEEEeCCccc
Confidence 48899999999999999999999999988754
No 20
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=97.14 E-value=0.0013 Score=60.56 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCCCCC--CcccchHHHHHHHHHHHhhCCCCChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccC
Q 006658 204 LRCLRFWAKRRGIYSNA--MGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWD 281 (636)
Q Consensus 204 lr~IK~WAK~RgIysn~--~G~LGGiswaiLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~ 281 (636)
+|.+|.++|.-|+|++- .++++||..=+||+++= + ....-+.-+ +|..++.++...++...
T Consensus 3 VrLLK~FlK~igvYGse~~~~GFSGYL~ELLii~yG------s----F~~~l~~a~--~W~~~~~Id~~~~~~~~----- 65 (114)
T PF09249_consen 3 VRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHYG------S----FENVLEAAA--KWKPPVVIDLEDHGEPS----- 65 (114)
T ss_dssp HHHHHHHHHHTT-B-SSTTT-SB-HHHHHHHHHHHS------S----HHHHHHHHT--T--TTEEEETT-TTE-------
T ss_pred hHHHHHHHhcCCCcchhhhcCcchHHHHHHHHHHHC------C----HHHHHHHHH--hcCCCeEEccCccchhh-----
Confidence 58899999999999975 68999999999999872 1 122222223 67778888753221110
Q ss_pred CCCCccCCCccceeeCCCCCCCCcccccChhhHHHHH
Q 006658 282 PRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQ 318 (636)
Q Consensus 282 p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~ 318 (636)
... ...+.|+||.+|.+|+|.+||..++..+.
T Consensus 66 --~~f---~~PlvviDPvDp~RNVAAalS~~~~~~fv 97 (114)
T PF09249_consen 66 --KKF---DDPLVVIDPVDPNRNVAAALSLENLAEFV 97 (114)
T ss_dssp --EEE----SS-EEEETTEEEEETTTTS-HHHHHHHH
T ss_pred --hhc---CCCeEEcCCCCCCchHhHhcCHHHHHHHH
Confidence 111 23699999999999999999988776554
No 21
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=97.04 E-value=0.0024 Score=54.22 Aligned_cols=32 Identities=38% Similarity=0.514 Sum_probs=28.7
Q ss_pred eEEEEeeeeecCCCCCCCceeEEEecCCCCCc
Q 006658 74 AKLFTFGSYRLGVAGPSTDIDALCVGPCYATR 105 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r 105 (636)
..++.|||++.|-+.++||||++++.+.....
T Consensus 19 ~~i~LfGS~arg~~~~~SDiDl~vi~~~~~~~ 50 (93)
T cd05403 19 EKVYLFGSYARGDARPDSDIDLLVIFDDPLDP 50 (93)
T ss_pred cEEEEEeeeecCCCCCCCCeeEEEEeCCCCCH
Confidence 68999999999999999999999999876543
No 22
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=96.70 E-value=0.014 Score=71.10 Aligned_cols=155 Identities=22% Similarity=0.329 Sum_probs=105.6
Q ss_pred hhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHH-hhCCCCChhh---HHHHHHHHhcc
Q 006658 183 GCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVC-QLYPNALPNV---LVSRFFKIFAH 258 (636)
Q Consensus 183 G~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vc-Ql~Pn~s~~~---LL~~FF~~Ys~ 258 (636)
..+-+..|..+--..+.|..++|.+|.|...+-+ .|++.--.+=+|||++. +-+|-..|+. =+.+|.++.+.
T Consensus 668 ~p~h~~~i~~l~~~~p~fs~tvRL~KrW~~shlL----s~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lLs~ 743 (972)
T PF03813_consen 668 LPKHTSAIHGLHTRFPSFSPTVRLAKRWLSSHLL----SGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLLST 743 (972)
T ss_pred hHHHHHHHHHHHhhCCchhHHHHHHHHHHHhccC----cccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHHHh
Confidence 4445556666666678999999999999999877 56778889999999987 3445444444 45556666789
Q ss_pred CCCCC-ceeecccCCCCCC----------CcccCCCCCccCCCccceeeCCCCCCCCc--ccccChhhHHHHHHHHHHHH
Q 006658 259 WKWPN-PVMLCPIQYQAMP----------HHVWDPRSNQRDRKHLMPIITPSYPCTNS--SYNVSSTTLRIMQEEFQRAK 325 (636)
Q Consensus 259 wdW~~-pV~l~~~~~g~l~----------~~~W~p~~~~~Dr~~~MpIiTP~~P~~Ns--a~nVs~stl~~I~~Ef~RA~ 325 (636)
|||.+ |++++... .+. +..|.. ..+......|.|.||.+|.-.. ...-+..-+++|+.--+.+.
T Consensus 744 ~dW~~~PLiVd~~~--~l~~~~~~~i~~~f~~~R~-~dp~~~~p~~~IaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~sl 820 (972)
T PF03813_consen 744 WDWREEPLIVDFNN--ELTEEDRAEIETNFDAWRK-IDPAMNLPAMFIATPYDPEGSLWTRNGPSKVVAKRLTALAKASL 820 (972)
T ss_pred CCCCcCCEEEECCC--CCCHHHHHHHHHHHHHhhc-cCccccCCcEEEEeCCCCCCCEeECCCCCHHHHHHHHHHHHHHH
Confidence 99996 88776432 221 122322 2233345689999999984332 12345556888888888888
Q ss_pred HHHHHHHcCCCCccccccc
Q 006658 326 ELCEEIEAGKRTWITLFEP 344 (636)
Q Consensus 326 ~il~~i~~~~~~W~~Lf~~ 344 (636)
++++.-..+..+|..||.+
T Consensus 821 ~~l~~~~~~~~~~~~lF~~ 839 (972)
T PF03813_consen 821 KLLEEQGLSDLDWKSLFRP 839 (972)
T ss_pred HHHHhcCCCCCCHHHhcCC
Confidence 8888432235789999975
No 23
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=96.13 E-value=0.065 Score=51.97 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=73.7
Q ss_pred EEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccce-eeecCCcccEEEEEEcCeeeeEeeeecc
Q 006658 76 LFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDL-TPVPDARVPVIKFKFNGVSVDLLYAQLQ 154 (636)
Q Consensus 76 I~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l-~~I~~A~VPIIKf~~~GI~iDLsfa~l~ 154 (636)
-...|...+|++.++||||++|.++.. + .|-..+.....+.++.+-- ..|..-..-+..|.+.|..+-|---..+
T Consensus 18 PiL~GTiPi~Idi~~SDLDIic~~~d~---~-~F~~~l~~~f~~~~~f~~~~~~i~~~~~~~~~F~~~~~~~EiF~Q~~P 93 (152)
T PF14091_consen 18 PILVGTIPIGIDIPGSDLDIICEVPDP---E-AFEQLLQSLFGQFEGFTIKEKTIRGEPSIVANFRYEGFPFEIFGQPIP 93 (152)
T ss_pred CEEecccccccCCCCCCccEEEEeCCH---H-HHHHHHHHHhccCCCceeeeceeCCceeEEEEEEECCceEEEeecCCC
Confidence 346799999999999999999999852 1 3333344444443332111 2244445556778888988886432221
Q ss_pred cCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCc-hhhHHHHHHHH--------HHHHHcCCCCC
Q 006658 155 FSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNI-RNFRSTLRCLR--------FWAKRRGIYSN 219 (636)
Q Consensus 155 ~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~-~~FR~llr~IK--------~WAK~RgIysn 219 (636)
+..-||+|-...-.++.-.. +.||.-+|-+| +||+--||-++
T Consensus 94 -----------------------v~~QnayrHm~iE~rLL~~~g~~~r~~Ii~LK~~GlKTEPAFa~lLgL~GD 144 (152)
T PF14091_consen 94 -----------------------VEEQNAYRHMLIEHRLLELHGPSFREEIIELKESGLKTEPAFAKLLGLEGD 144 (152)
T ss_pred -----------------------hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCcchHHHHHHhCCCCC
Confidence 34458888654444444444 78999888887 46666666544
No 24
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=95.94 E-value=0.032 Score=50.31 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=25.0
Q ss_pred eEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 74 AKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
..+-.||||+=|=..|+||||+++-.-.
T Consensus 25 ~~~~vFGS~aRgE~~~~SDIDILVef~~ 52 (97)
T COG1669 25 KRVAVFGSYARGEQKPDSDIDILVEFEP 52 (97)
T ss_pred ceEEEeeeeecCCCCCCCCceeEEeecC
Confidence 5788999999999999999999997644
No 25
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=95.34 E-value=0.81 Score=47.84 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=135.8
Q ss_pred eeeeecCCCCCC-CceeEEEecCCCCCchhhHHHHHHHHHhc----C-CC-cc---c-eeeecCCcccEEEEEE--c--C
Q 006658 79 FGSYRLGVAGPS-TDIDALCVGPCYATRHDDFFGKLFRMLQE----T-PL-VE---D-LTPVPDARVPVIKFKF--N--G 143 (636)
Q Consensus 79 FGSy~lGv~~p~-SDID~l~v~P~~v~r~~~FF~~l~~~L~~----~-~~-v~---~-l~~I~~A~VPIIKf~~--~--G 143 (636)
.||+.-|+.+.| -+.|+|+++..-.+. +++..+.+.|.+ . ++ |. + ...|...+.|.+...+ . .
T Consensus 2 VG~~aKGllL~Gd~~~eLVVlck~kPT~--~lL~~v~~~L~~~L~~~~~~ev~~~~e~~~~~~~~~~~~~~~~~~lts~~ 79 (248)
T PF07528_consen 2 VGSFAKGLLLKGDNDVELVVLCKEKPTK--ELLNRVAEKLPEQLKKVTPEEVTNSVEAAIIIDSCKEPKLEVGIDLTSPV 79 (248)
T ss_pred cceecCCceecCCceEeEEEEcCCCCcH--HHHHHHHHHHHHHHhhhCccccccchhhhhhhcccccccceeeEEecCCc
Confidence 599999999887 578999999877776 566665555443 2 22 11 1 1112223336655544 2 3
Q ss_pred eeeeEeeeecccCCCCCccCccchhhccccch-hhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCc
Q 006658 144 VSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDE-QTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMG 222 (636)
Q Consensus 144 I~iDLsfa~l~~~~~p~~l~l~~d~lL~~lde-~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G 222 (636)
+.+.+.... .+++..-.+ .-..||. .|..+|-.+|-+.++.+........+.++|++|-..+|--- ++
T Consensus 80 ~r~~~~~~~-----~~~~~~~~d--p~~~Ld~~~cl~aLaalRhakWFq~~a~~l~s~~~viRIlrDl~~R~p~----w~ 148 (248)
T PF07528_consen 80 MRVRVLITT-----IPENLSKLD--PEDHLDRKKCLSALAALRHAKWFQARANGLQSCVIVIRILRDLRQRVPT----WQ 148 (248)
T ss_pred eEEEEeccc-----cCccccccC--hhhcCCHHHHHHHHHHHHHhHHHHHHhccCCCcceehhhHHHHHHhCCC----CC
Confidence 333333222 233332112 1123453 68888899999999999888888899999999999887533 56
Q ss_pred ccchHHHHHHHHHHHhhCCC---CChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCC
Q 006658 223 FLGGINWALLVARVCQLYPN---ALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPS 299 (636)
Q Consensus 223 ~LGGiswaiLVa~vcQl~Pn---~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~ 299 (636)
.|+++.+=+|+-+..---|+ .++++-+.+||+..|. .+.+. |..| |.||+
T Consensus 149 ~L~~W~leLL~~~~i~~~~~~~~l~~g~a~RRvle~las-----Gillp----~~~g------------------l~DPc 201 (248)
T PF07528_consen 149 PLSSWALELLVEKAISNNSSRQPLSPGDAFRRVLECLAS-----GILLP----GSPG------------------LRDPC 201 (248)
T ss_pred CCChhHHHHHHHHHeeeCCCCCCCChHHHHHHHHHHHhC-----ceecC----CCCC------------------CcCCC
Confidence 68888888877766653333 4688999999999772 11111 1111 34667
Q ss_pred C-CCCCcccccChhhHHHHHHHHHHHHHHHH
Q 006658 300 Y-PCTNSSYNVSSTTLRIMQEEFQRAKELCE 329 (636)
Q Consensus 300 ~-P~~Nsa~nVs~stl~~I~~Ef~RA~~il~ 329 (636)
. ...|+..+.|.-....|..--|.+..++.
T Consensus 202 E~~~~~~~~~lt~qq~e~it~sAQ~~LRlla 232 (248)
T PF07528_consen 202 EKDPVDVLDTLTLQQREDITSSAQTALRLLA 232 (248)
T ss_pred CCCCceeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 6 56788888888888889888888777765
No 26
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=94.64 E-value=0.069 Score=56.10 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.4
Q ss_pred eEEEEeeeeecCCCCCCCceeEEEecCCCCCc
Q 006658 74 AKLFTFGSYRLGVAGPSTDIDALCVGPCYATR 105 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r 105 (636)
.-|+.|||+..|-..|.||||++++.....+.
T Consensus 29 ~~vyLfGS~~~G~~~p~SDIDllvvv~~~l~~ 60 (262)
T PRK13746 29 LAIHLYGSAVDGGLKPHSDIDLLVTVAVPLDE 60 (262)
T ss_pred EEEEEECCcccCCCCCCCceeEEEEeCCCCCH
Confidence 36899999999999999999999999876654
No 27
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=94.51 E-value=0.06 Score=48.16 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.5
Q ss_pred CeEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 73 NAKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 73 ~~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
...++.|||++-|=+.+.||||++++++.
T Consensus 26 ~~~v~LfGS~arG~~~~~SDiDv~vv~~~ 54 (128)
T COG1708 26 DLLIYLFGSYARGDFVKESDIDLLVVSDD 54 (128)
T ss_pred CeEEEEEccCcccccccCCCeeEEEEcCC
Confidence 58899999999999999999999999833
No 28
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=92.80 E-value=1.2 Score=47.65 Aligned_cols=113 Identities=25% Similarity=0.276 Sum_probs=72.9
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEc------Cee
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFN------GVS 145 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~------GI~ 145 (636)
...++.+.||||=|-.+ .+|||+|+..+..... .++..+...|.+.+.+..+. ..-..-....+. |+.
T Consensus 159 ~~~~v~i~GS~RRg~et-~gDiDilv~~~~~~~~--~~~~~v~~~l~~~~~~~~~~---~~g~~k~~~~~~~~~~~~~~r 232 (307)
T cd00141 159 PVLQVEIAGSYRRGKET-VGDIDILVTHPDATSR--GLLEKVVDALVELGFVTEVL---SKGDTKASGILKLPGGWKGRR 232 (307)
T ss_pred CceEEEEcccccCCCCc-cCCEEEEEecCCcccc--ccHHHHHHHHHhCCCeehhh---hCCCceEEEEEecCCCCCceE
Confidence 46899999999999876 4799999988765442 67778888888877664431 111112222222 899
Q ss_pred eeEeeeecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCccc
Q 006658 146 VDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFL 224 (636)
Q Consensus 146 iDLsfa~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~L 224 (636)
|||.++.... + .-.++-+-.+.. -.|.++.||++||..=+..|..
T Consensus 233 VDl~~~p~~~--~----------------------------~~all~fTGs~~----~nr~lR~~A~~~G~~L~~~GL~ 277 (307)
T cd00141 233 VDLRVVPPEE--F----------------------------GAALLYFTGSKQ----FNRALRRLAKEKGLKLNEYGLF 277 (307)
T ss_pred EEEEEeCHHH--H----------------------------HHHHHHhhCCHH----HHHHHHHHHHHcCCeeeccccc
Confidence 9999876321 0 112232333322 3466799999999887777764
No 29
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=91.78 E-value=0.33 Score=49.85 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=28.5
Q ss_pred CeEEEEeeeee----cCC--CCCCCceeEEEecCCCCCch
Q 006658 73 NAKLFTFGSYR----LGV--AGPSTDIDALCVGPCYATRH 106 (636)
Q Consensus 73 ~~kI~~FGSy~----lGv--~~p~SDID~l~v~P~~v~r~ 106 (636)
+..+.+|||+. +|+ -.++||||+++-.|.....+
T Consensus 120 g~~~gv~GS~a~qlaTG~~~l~~~SDLDLLi~~~~~~~~~ 159 (221)
T PRK02098 120 GVDCRVFGSLAWQALTGLPYLSASSDLDLLWPLPAAAQIA 159 (221)
T ss_pred CCcEEEeeehHHHHhhCCcccCCCCCeeEEEecCChhhHH
Confidence 45789999999 999 79999999999888655543
No 30
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=91.72 E-value=0.3 Score=49.05 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHHHHHHcCCCCCCC-cccchHHHHHHHHHHHhhCCCCChhhHHHHH
Q 006658 197 IRNFRSTLRCLRFWAKRRGIYSNAM-GFLGGINWALLVARVCQLYPNALPNVLVSRF 252 (636)
Q Consensus 197 ~~~FR~llr~IK~WAK~RgIysn~~-G~LGGiswaiLVa~vcQl~Pn~s~~~LL~~F 252 (636)
....+.++|.||+|-+...-..... +.+.+|++-||+++.-..-.+..--.+-.+|
T Consensus 41 P~klK~LIrLVKhWy~~~~~~~~~~~~lPpsYaLELLtIyAWE~g~~~~~F~~a~gf 97 (190)
T PF10421_consen 41 PTKLKNLIRLVKHWYQQCKKKKCGGGSLPPSYALELLTIYAWEQGCGAEDFSTAEGF 97 (190)
T ss_dssp -HHHHHHHHHHHHHHHHHHCC--HTT-S--HHHHHHHHHHHHHHHT-SSS--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhcCCCcCcchhhhH
Confidence 4678899999999999866664444 4467899999999999876544322333344
No 31
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=90.82 E-value=0.42 Score=48.40 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=28.7
Q ss_pred CeEEEEeeee----ecCC--CCCCCceeEEEecCCCCCch
Q 006658 73 NAKLFTFGSY----RLGV--AGPSTDIDALCVGPCYATRH 106 (636)
Q Consensus 73 ~~kI~~FGSy----~lGv--~~p~SDID~l~v~P~~v~r~ 106 (636)
+..+-+|||+ .+|+ -.++||||+++-.|.....+
T Consensus 108 ~~~~gv~GS~~~qlaTg~~~~~~~SDLDLLi~~~~~~~~~ 147 (202)
T TIGR03135 108 GVPWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPSPLSLA 147 (202)
T ss_pred CCcEEEecchHHHHhcCCcccCCCCCeeEEEcCCChhhHH
Confidence 4678999999 8999 79999999999998765553
No 32
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=87.59 E-value=1.1 Score=41.20 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=39.2
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCc---hhhHHHHHHHHHhcCCCcc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATR---HDDFFGKLFRMLQETPLVE 124 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r---~~~FF~~l~~~L~~~~~v~ 124 (636)
.+..+..-||||=|-...+ |||+|+..|..... ...++..+...|.+..-++
T Consensus 23 p~~~v~i~GSyRRGK~~~g-DiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~g~i~ 77 (112)
T PF14792_consen 23 PGLEVEICGSYRRGKETSG-DIDILITHPDPSSVSKKLEGLLEKLVKRLEEKGFIT 77 (112)
T ss_dssp TT-EEEEEHHHHTT-SEES-SEEEEEEETTCSTTTCSTTCHHHHHHHHHHHTTSEE
T ss_pred CCcEEEEccccccCCCcCC-CeEEEEeCCCcCcchhhHHHHHHHHHHHHHhCCeEE
Confidence 4689999999999988766 99999999876552 1278889999998854443
No 33
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=86.63 E-value=2.5 Score=40.76 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=37.0
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQE 119 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~ 119 (636)
...-++.+|||+-|=-.+.||||++++.+........+|..+.+.+.+
T Consensus 54 ~~~~~la~Gs~GR~E~~~~SD~D~~~v~~~~~~~~~~~~~~l~~~i~~ 101 (172)
T cd05401 54 VPFALLALGSYGRGELNPSSDQDLLLLYDDDGDEVAAYFEELAERLIK 101 (172)
T ss_pred CcEEEEEeCCcccCCcCCCcCcceEEEeCCCCchHHHHHHHHHHHHHH
Confidence 468899999999999999999999999865432122577776666554
No 34
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=85.34 E-value=0.21 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.374 Sum_probs=22.3
Q ss_pred EEeeeeecCCCCCCCceeEEEecCC
Q 006658 77 FTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 77 ~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
=.-||..+|++..+||||+++.++.
T Consensus 125 GVTGSiL~gl~~~nSDIDfVVYG~~ 149 (315)
T COG1665 125 GVTGSILLGLYDENSDIDFVVYGQM 149 (315)
T ss_pred cccccccccccCCCCCceEEEEcHH
Confidence 3569999999999999999999954
No 35
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=83.73 E-value=6.1 Score=37.42 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=38.1
Q ss_pred hcCeEEEEeeeeecCCCCCCCceeEEEecCCCCCch-hhHHHHHHHHHhc
Q 006658 71 EANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRH-DDFFGKLFRMLQE 119 (636)
Q Consensus 71 ~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~-~~FF~~l~~~L~~ 119 (636)
....-++.+||++=+=.++.||+|..+|.......+ ..+|..|.+.+..
T Consensus 47 p~~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~ 96 (138)
T PF03445_consen 47 PVPFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVD 96 (138)
T ss_pred CCCEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHH
Confidence 467899999999999999999999999987722221 3678777666654
No 36
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]
Probab=81.98 E-value=28 Score=37.18 Aligned_cols=214 Identities=18% Similarity=0.257 Sum_probs=110.4
Q ss_pred hhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCc
Q 006658 13 DVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTD 92 (636)
Q Consensus 13 d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SD 92 (636)
|-..+++|++ ++.++.|+.+|...=...+.+++.++.+-+. .|+- +-. -..|--.|||..|..+.++|
T Consensus 38 D~~f~~alLk--RnqdL~P~~~~q~~I~~~vtKV~~vLdn~~~-----~~L~-~~~----ieevrqVGSF~k~T~~tg~~ 105 (362)
T KOG3793|consen 38 DTSFSEALLK--RNQDLAPNSAEQASILSLVTKVNNVLDNLVA-----PGLF-EVQ----IEEVRQVGSFKKGTMTTGHN 105 (362)
T ss_pred chHHHHHHHh--hhccCCCCHHHHHHHHHHHHHHHHHHHhhcc-----CCce-Eee----hhhhhhccceeccccccCCc
Confidence 5555555555 3457999999988777777777777664432 1222 111 13456789999999999888
Q ss_pred e-eEEEecCCCCCch--hhHHHHHHHHHhcCCCccceeeecCCcccEEEE--EEc--CeeeeEeeeecccCCCCCccCcc
Q 006658 93 I-DALCVGPCYATRH--DDFFGKLFRMLQETPLVEDLTPVPDARVPVIKF--KFN--GVSVDLLYAQLQFSVIPEDLDSL 165 (636)
Q Consensus 93 I-D~l~v~P~~v~r~--~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf--~~~--GI~iDLsfa~l~~~~~p~~l~l~ 165 (636)
. |+|++-..-.+.+ ...=.++.+-|+-. .-+++-. |=+.+- .+. .-.+-|+++. +|+++.-.
T Consensus 106 ~advVViLkTLPt~EaV~aLg~Kv~e~lka~-d~~Evlt-----vl~~e~G~~I~s~~~~VRiLIt~-----iP~n~~KL 174 (362)
T KOG3793|consen 106 VADLVVILKTLPTLEAVAALGNKVVESLRAQ-DPSEVLT-----VLTNETGFEISSSDATVRILITT-----VPPNLRKL 174 (362)
T ss_pred ccceEEEeecCCcHHHHHHHHHHHHHHhhhc-ChHHHHH-----HHhhccceeeecccceEEEEEee-----cCchhccc
Confidence 6 6666654433332 01112233333321 1111110 112221 111 3344445444 44443211
Q ss_pred chhhccccchhhh-hhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHH-HHHHHHhh-CCC
Q 006658 166 QDSLLHNLDEQTV-LSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWAL-LVARVCQL-YPN 242 (636)
Q Consensus 166 ~d~lL~~lde~s~-rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswai-LVa~vcQl-~Pn 242 (636)
+++-.||-+-+ ..|-.+|-+.++-+- ......+.++|.+|---.+ +.||=.=-.|+| |++++|-+ -|+
T Consensus 175 --EP~lHLD~K~M~~~l~a~RH~~WFee~-A~~s~~~~lir~LKDlr~r------~~~F~PLs~W~ldll~h~avmNnp~ 245 (362)
T KOG3793|consen 175 --EPELHLDIKVMQSALAAIRHARWFEEN-ASQSTVKVLIRLLKDLRIR------FPGFEPLTPWILDLLGHYAVMNNPT 245 (362)
T ss_pred --ChhhhhhHHHHHHHHHHHhhhhhhhhh-hhHHHHHHHHHHHHHHHhh------cCCCCCchHHHHHHHHHHHHHcCCc
Confidence 12223332221 223344444333322 2235577788888865433 345532234544 67888866 344
Q ss_pred ---CChhhHHHHHHHHhcc
Q 006658 243 ---ALPNVLVSRFFKIFAH 258 (636)
Q Consensus 243 ---~s~~~LL~~FF~~Ys~ 258 (636)
+.++.-..+||++.+.
T Consensus 246 RQ~l~ln~Afrr~~qilaA 264 (362)
T KOG3793|consen 246 RQPLALNVAYRRCLQILAA 264 (362)
T ss_pred cccchhhHHHHHHHHHHHh
Confidence 3567779999999874
No 37
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.27 E-value=7.6 Score=46.78 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCCCCc
Q 006658 43 LGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATR 105 (636)
Q Consensus 43 l~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r 105 (636)
+.....++..|...+-...|++ +..+.-|..+|.|+=|--.|.||||++++.|.-.+.
T Consensus 41 ~~~~~~~~d~~L~~lw~~~g~~-----~~~~~aLvAVGGyGRgEL~P~SDiDlL~L~p~~~~~ 98 (867)
T COG2844 41 IELRTDLVDQLLIRLWQEIGFA-----DASGLALVAVGGYGRGELHPLSDIDLLLLSPQKLTD 98 (867)
T ss_pred HHHHHHHHHHHHHHHHHHcCcc-----cccceEEEEeccccccccCCCccceEEEecCCCCCh
Confidence 3344455556666666667776 335788999999999999999999999999986654
No 38
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=75.05 E-value=5 Score=41.64 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=33.7
Q ss_pred hhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCCCCc------hhhHHHHHHHHHhc
Q 006658 59 MDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATR------HDDFFGKLFRMLQE 119 (636)
Q Consensus 59 ~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r------~~~FF~~l~~~L~~ 119 (636)
.+.|.|........+.-|.-.|-++-+=-..+||||+++|.+..-.. ...||.++.+.|.+
T Consensus 113 ~~~G~p~~~~~~~~~~~ViamGKlGg~ELny~SDiDLifvy~~~~~~~~~~~~~~~~~~rl~~~~~~ 179 (247)
T PF03710_consen 113 ARYGRPPDEDGEPAGFAVIAMGKLGGRELNYSSDIDLIFVYDPDGETGRRSISNQEFFTRLAQRLIR 179 (247)
T ss_dssp HHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-SSS-SBHHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcCCeEEEEeccccccccCCccCCceEEEeccccccccChhhHHHHHHHHHHHHHH
Confidence 34565521112223678888888888888999999999998643221 13799888887765
No 39
>PRK05007 PII uridylyl-transferase; Provisional
Probab=71.98 E-value=13 Score=45.70 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCC
Q 006658 42 VLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCY 102 (636)
Q Consensus 42 vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~ 102 (636)
++..+..++.++++..-...+++ ...+.-|...|+|+=|=-.|.||||++++.+..
T Consensus 54 ~~~~~s~~~D~~l~~l~~~~~~~-----~~~~~alvAvGgyGR~EL~p~SDiDll~l~~~~ 109 (884)
T PRK05007 54 LVEARTEFIDQLLQRLWIEAGFD-----QIPDLALVAVGGYGRGELHPLSDIDLLILSRKK 109 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHccCC-----CcCceEEEecCCCCCcccCCcccceEEEEeCCC
Confidence 45555555555555544444444 124688999999999999999999999999843
No 40
>PRK08609 hypothetical protein; Provisional
Probab=70.96 E-value=21 Score=41.58 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=64.3
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEE-cCeeeeEee
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKF-NGVSVDLLY 150 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-~GI~iDLsf 150 (636)
...++..-||||=|--+- .|||+|+..+.. ..+.+.|.+.+.|.++..-...+.-+ .+.. .|+.|||-+
T Consensus 174 ~~~~v~~~GS~RR~~et~-gDiDili~~~~~--------~~~~~~l~~~~~v~~~~~~g~~~~~~-~~~~~~~~~vDl~~ 243 (570)
T PRK08609 174 EIIRFSRAGSLRRARETV-KDLDFIIATDEP--------EAVREQLLQLPNIVEVIAAGDTKVSV-ELEYEYTISVDFRL 243 (570)
T ss_pred CccEEEeccchhcccccc-CCeeEEEecCCH--------HHHHHHHHcCccHHHHHhcCCceEEE-EEecCCCeEEEEEE
Confidence 357899999999998764 699999977542 12334444455554442222222211 2332 399999998
Q ss_pred eecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCccc
Q 006658 151 AQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFL 224 (636)
Q Consensus 151 a~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~L 224 (636)
+.... + .-.++-+-.... -.|.++.||++||+.=|-.|..
T Consensus 244 v~~~~--~----------------------------~~aL~yfTGS~~----hn~~lr~~A~~~g~~l~e~gl~ 283 (570)
T PRK08609 244 VEPEA--F----------------------------ATTLHHFTGSKD----HNVRMRQLAKERGEKISEYGVE 283 (570)
T ss_pred eCHHH--H----------------------------HHHHHHHhccHH----HHHHHHHHHHHcCCcccccccc
Confidence 76321 0 011222222222 3455689999999998888874
No 41
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=69.26 E-value=17 Score=39.58 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=37.6
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcC
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQET 120 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~ 120 (636)
+++.+..-||||=|- ..+.|||+|+-.|..-+.+...+..+...|.+.
T Consensus 170 p~~~vt~~GsfRRGk-~~ggDvD~LithP~~~s~~~~~~~~l~~~le~~ 217 (353)
T KOG2534|consen 170 PEAFVTVTGSFRRGK-KMGGDVDFLITHPGSTSTEAKLLQLLMILLEKK 217 (353)
T ss_pred CCcEEEEeccccCCc-ccCCCeeEEEeCCCCCchhhhHHHHHHHHHHhc
Confidence 468899999999984 678999999999875543336777788888764
No 42
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61 from EC). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.; GO: 0016779 nucleotidyltransferase activity
Probab=64.35 E-value=10 Score=38.66 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=29.5
Q ss_pred CeEEEEeeeee----cCCC--CCCCceeEEEecCCCCCchhhHHHHHHH
Q 006658 73 NAKLFTFGSYR----LGVA--GPSTDIDALCVGPCYATRHDDFFGKLFR 115 (636)
Q Consensus 73 ~~kI~~FGSy~----lGv~--~p~SDID~l~v~P~~v~r~~~FF~~l~~ 115 (636)
+...-+|||+. +|+. .++||||+++-.+.....+ .+...+.+
T Consensus 116 ~~~~gv~GS~g~qlaTGl~~l~~~SDLDLli~~~~~~~~~-~l~~~L~~ 163 (213)
T PF10620_consen 116 GLRWGVYGSLGFQLATGLPYLHADSDLDLLIRPPSPSQAD-ALLALLQA 163 (213)
T ss_pred CCCEEEehhHHHHHHhCccccCCCCCceEEEeCCChhHHH-HHHHHHHH
Confidence 56788999975 4444 7899999999998866443 44444433
No 43
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=64.22 E-value=22 Score=42.51 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHH
Q 006658 36 SLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFR 115 (636)
Q Consensus 36 ~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~ 115 (636)
.+.|+++.+.-..+++. .++| .+.-|...|+|+=|=-.|.||||++++.+.... + ++.+.|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~--------~~~~-------~~~aLvAvGGYGR~EL~P~SDIDLLiL~~~~~~-~-~~i~~~~~ 67 (693)
T PRK00227 5 AQLREDAEASALALLGS--------LQLP-------PGTALAATGSLARREMTPYSDLDLILLHPPGAT-P-DGVEDLWY 67 (693)
T ss_pred HHHHHHHHHHHHHHHHh--------cCCC-------CCeEEEEeccccccCcCCCcCceEEEEeCCccc-H-HHHHHHHH
Confidence 34566666666666653 2454 257899999999999999999999999974322 2 44444433
Q ss_pred HH
Q 006658 116 ML 117 (636)
Q Consensus 116 ~L 117 (636)
.|
T Consensus 68 ~L 69 (693)
T PRK00227 68 PI 69 (693)
T ss_pred HH
Confidence 33
No 44
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=63.69 E-value=84 Score=34.24 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=24.8
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCC
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCY 102 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~ 102 (636)
....+..-||||=|-.+ ..|||+|+..+..
T Consensus 163 ~~~~v~i~GSyRRgket-~gDIDili~~~~~ 192 (334)
T smart00483 163 PDAIVTLTGSFRRGKET-GHDVDFLITSPHP 192 (334)
T ss_pred CCcEEEEecccccCCCc-CCCeeEEEecCCc
Confidence 45789999999999776 4799999988764
No 45
>PF03281 Mab-21: Mab-21 protein
Probab=62.80 E-value=2e+02 Score=30.06 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhCCCC---ChhhHHHHHHHHhccCCCCCceeecccCCC
Q 006658 197 IRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA---LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQ 273 (636)
Q Consensus 197 ~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~Pn~---s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g 273 (636)
....+.++|++|.-..... ...+.|++|++-.++.+.|..+|.. ....|-.+|.++.... ++-..++
T Consensus 190 ~~~~~~~l~llk~l~~~~~---~~~~~l~syhLkt~ll~~~~~~p~~~~W~~~~l~~~l~~~l~~L-------~~~L~~~ 259 (292)
T PF03281_consen 190 NGCRKKCLRLLKALRDRHL---TNLSGLSSYHLKTVLLWLCEKHPSSSDWSEENLGERLLDLLDFL-------IKCLQEG 259 (292)
T ss_pred cccHHHHHHHHHHHHHhcc---ccCCCccHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH-------HHHHhcC
Confidence 4567889999998877766 6678899999999999999999875 2344444444432210 0111112
Q ss_pred CCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHH
Q 006658 274 AMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQR 323 (636)
Q Consensus 274 ~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~R 323 (636)
.+. .-+.|..|.=.+.+..++..+..++.+
T Consensus 260 ~Lp--------------------hff~~~~NLf~~~~~~~~~~~~~~~~~ 289 (292)
T PF03281_consen 260 RLP--------------------HFFIPNLNLFQHLSPEELDELARKLER 289 (292)
T ss_pred CCC--------------------ccCCCCcccCCCCCHHHHHHHHHHHHH
Confidence 221 125578888888888888777776654
No 46
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=60.73 E-value=7.1 Score=40.19 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=22.6
Q ss_pred eEEEEeeeeecCCCCCCCceeEEEecC
Q 006658 74 AKLFTFGSYRLGVAGPSTDIDALCVGP 100 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~SDID~l~v~P 100 (636)
.-...+||..-|+.+|+||.|+-+|.-
T Consensus 21 l~~~~sGS~a~G~~s~dSD~D~r~vy~ 47 (247)
T PF10127_consen 21 LYACESGSRAYGFASPDSDYDVRGVYI 47 (247)
T ss_pred EEEecccccccCCCCCCcCcccchhcc
Confidence 445578999999999999999977653
No 47
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=60.70 E-value=29 Score=42.45 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCC
Q 006658 42 VLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCY 102 (636)
Q Consensus 42 vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~ 102 (636)
++.....++.++++..-...+.+ + ..+.-|...|+|+=|=-.|.||||++++.+..
T Consensus 30 ~~~~~~~~~D~~l~~l~~~~~~~-~----~~~iaLvAvGGYGR~eL~P~SDIDlliL~~~~ 85 (854)
T PRK01759 30 LIENRSDFYDQLLIHLWQQFGLE-E----QSDLALIAVGGYGRREMFPLSDLDILILTEQP 85 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHccCC-C----CCCeEEEEeCCcccccCCCcccceEEEEeCCC
Confidence 55566666666665543333332 1 13478999999999999999999999998743
No 48
>PRK03059 PII uridylyl-transferase; Provisional
Probab=60.31 E-value=14 Score=45.13 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 42 VLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 42 vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
++..+..++..+++..-...+++ .+.-|...|+|+=|=-.|.||||++++.+.
T Consensus 37 ~~~~~s~l~d~~l~~~~~~~~~~-------~~~alvAvGgyGR~EL~p~SDiDll~l~~~ 89 (856)
T PRK03059 37 LLHALSRLVDQALRRLWQECGLP-------AGAALVAVGGYGRGELFPYSDVDLLVLLPD 89 (856)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-------CCeEEEEcCCCCCcccCCCCCCEEEEEecC
Confidence 56666666666665443223332 357899999999999999999999999864
No 49
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=54.50 E-value=21 Score=35.51 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=45.2
Q ss_pred CeEEEEeeeeec----CCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeE
Q 006658 73 NAKLFTFGSYRL----GVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDL 148 (636)
Q Consensus 73 ~~kI~~FGSy~l----Gv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDL 148 (636)
+.+.+..|++.+ |.-..+.|||+.+..+.... +.++|..++....-.-+-+++ .....++++...++.|||
T Consensus 16 gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~~~~-~~~~~~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~v~IDl 90 (181)
T PF09970_consen 16 GVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPSPNL-EADALREVAEENGWDLGWTDF----GTPRYVVKVGGEDVRIDL 90 (181)
T ss_pred CCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCchHH-HHHHHHHHHHHcCCCcCcccc----CCCceEEEeCCCCeEEEc
Confidence 457899999864 66678999999887765332 225555554322110111111 223455666667999999
Q ss_pred eeeecc
Q 006658 149 LYAQLQ 154 (636)
Q Consensus 149 sfa~l~ 154 (636)
+.++.
T Consensus 91 -~~ni~ 95 (181)
T PF09970_consen 91 -LENIG 95 (181)
T ss_pred -hhccC
Confidence 54443
No 50
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=50.88 E-value=30 Score=35.44 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=30.2
Q ss_pred CeEEEEeeeee----cCCC--CCCCceeEEEecCCCCCchhhHHHHHHHHHh
Q 006658 73 NAKLFTFGSYR----LGVA--GPSTDIDALCVGPCYATRHDDFFGKLFRMLQ 118 (636)
Q Consensus 73 ~~kI~~FGSy~----lGv~--~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~ 118 (636)
+...-+|||.. +|+. .++||||+++.+|...+. +-+..+.+.|.
T Consensus 109 ~~~wgv~GS~g~qlaTGl~~l~~~SDLDLlir~~~~l~~--~~~~~ll~~l~ 158 (207)
T PRK01293 109 GLAWGVTGSAGFELATGIPVLHADSDLDLLIRAPQPLAR--DQARELLQLLD 158 (207)
T ss_pred CCceeeehhHHHHHhhCCccccCCCCccEeecCCCcccH--HHHHHHHHHHh
Confidence 35567999975 4443 789999999999886665 33444444444
No 51
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=48.51 E-value=59 Score=40.11 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=28.2
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCC
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYA 103 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v 103 (636)
.+.-|...|.|+=|--.|.||||++++.+...
T Consensus 77 ~~~alvAvGgyGR~EL~p~SDiDll~l~~~~~ 108 (895)
T PRK00275 77 ADIALVAVGGYGRGELHPYSDIDLLILLDSAD 108 (895)
T ss_pred CCEEEEEcCCccccCcCCCCCceEEEEecCCC
Confidence 35789999999999999999999999987543
No 52
>PRK03381 PII uridylyl-transferase; Provisional
Probab=45.73 E-value=44 Score=40.45 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=27.2
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
...-|...|+|+-|--.|.||||++++.+.
T Consensus 56 ~~~alvAvg~~gr~el~p~SD~Dll~l~~~ 85 (774)
T PRK03381 56 SGVALVAVGGLGRRELLPYSDLDLVLLHDG 85 (774)
T ss_pred CCeEEEEeCCcCCcCcCCCCCCeEEEEeCC
Confidence 357899999999999999999999999873
No 53
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=44.13 E-value=45 Score=41.62 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=37.3
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCC-c---hhhHHHHHHHHHhc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYAT-R---HDDFFGKLFRMLQE 119 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~-r---~~~FF~~l~~~L~~ 119 (636)
.+.-|..+|+|+=+=-.+.||||++++...... . ...||..+.+.+..
T Consensus 722 ~~~avia~Gk~Gr~EL~~~SDlDl~fl~~~~~~~~~~~~~~~~~rlaq~l~~ 773 (1007)
T PRK14109 722 ARIAVIGMGRLGGRELGYGSDADVMFVHEPAPGADEAEAVRWATAVAEELRR 773 (1007)
T ss_pred CCEEEEEeccccccccCCCCCCcEEEEeCCCCCCCchhHHHHHHHHHHHHHH
Confidence 457899999999999999999999999863211 1 12688888877765
No 54
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=42.59 E-value=67 Score=39.93 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=52.3
Q ss_pred hHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhh-CC---CCChhhHHHHHHHHhccCC
Q 006658 185 RVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQL-YP---NALPNVLVSRFFKIFAHWK 260 (636)
Q Consensus 185 Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl-~P---n~s~~~LL~~FF~~Ys~wd 260 (636)
|.+-.|..+-..+..|-.++|.-|.|...+=+-+ .+--=++=+|||...+. +| ..++-.=..+|..+.|+||
T Consensus 806 ~ht~aL~~l~qsh~~ys~vvrLaKrWl~shLL~~----h~~De~iELLva~lf~~p~p~~~psS~~~gFlRfL~llS~~d 881 (1121)
T KOG2054|consen 806 LHTLALQSLSQSHPFYSSVVRLAKRWLGSHLLSG----HHLDEAIELLVAALFLKPGPLVPPSSPENGFLRFLSLLSTWD 881 (1121)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHhcCccCCCCCCCcchhHHHHHHHHhcCc
Confidence 3344444444456889999999999987664322 22244667888877653 44 3344444677778889999
Q ss_pred CCC-ceeec
Q 006658 261 WPN-PVMLC 268 (636)
Q Consensus 261 W~~-pV~l~ 268 (636)
|.. |.+++
T Consensus 882 W~~~PLIvd 890 (1121)
T KOG2054|consen 882 WKFDPLIVD 890 (1121)
T ss_pred ccCCceEEE
Confidence 997 66654
No 55
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=42.58 E-value=77 Score=38.72 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=27.6
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCC
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCY 102 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~ 102 (636)
.+.-|...|||+=|=-.|.||||++++.+..
T Consensus 42 ~~~aliA~GgyGR~El~p~SDiDll~l~~~~ 72 (850)
T TIGR01693 42 SGIALVAVGGYGRGELAPYSDIDLLFLHDGK 72 (850)
T ss_pred CCeEEEEeCCccccCcCCCCCCeEEEEeCCC
Confidence 4578999999999999999999999998753
No 56
>PRK04374 PII uridylyl-transferase; Provisional
Probab=42.36 E-value=83 Score=38.76 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=26.7
Q ss_pred CeEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 73 NAKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 73 ~~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
+.-|...|+|+=|=-.|.||||++++.+.
T Consensus 72 ~~alvAvGgYGR~EL~p~SDIDLliL~~~ 100 (869)
T PRK04374 72 GLSLHAVGGYGRGELFPRSDVDLLVLGET 100 (869)
T ss_pred CEEEEEcCCccccccCCcccceEEEEecC
Confidence 47899999999999999999999999874
No 57
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=41.86 E-value=49 Score=41.05 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=36.1
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCC-CC-------chhhHHHHHHHHHhc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCY-AT-------RHDDFFGKLFRMLQE 119 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~-v~-------r~~~FF~~l~~~L~~ 119 (636)
.+.-|+-.|-|+-+=-.+.||||++++.+.. .+ ....||.++.+.|.+
T Consensus 153 ~~~aViamGKlG~~ELn~~SDIDLifly~~~~~~~~~~~~~~~~~~f~rl~q~li~ 208 (943)
T PRK11072 153 QPLLILGMGKLGGRELNFSSDIDLIFTYPEHGETQGGRRSIDNQQFFTRLGQRLIK 208 (943)
T ss_pred CCEEEEEeccccCccCCCccCCceEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH
Confidence 5678888888888888999999999998732 11 113789888877655
No 58
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=40.48 E-value=33 Score=33.21 Aligned_cols=78 Identities=22% Similarity=0.447 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCC---Cce
Q 006658 20 LEKILVDEKLFASEEESLGRVEV---LGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPS---TDI 93 (636)
Q Consensus 20 L~~~L~~~~~~ps~EE~~~R~~v---l~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~---SDI 93 (636)
..+.|.++++..-.++...|..| +..+.+++++.+++ ++ -....+|||-+-+-.|+ .||
T Consensus 9 a~~~l~s~~v~~~~~~~~grh~vS~lV~~V~klmeEyLrr----hN-----------k~CicYGSyslhllN~~I~YgDI 73 (149)
T PF03296_consen 9 ASDYLNSYNVANPSGKVMGRHNVSDLVENVNKLMEEYLRR----HN-----------KSCICYGSYSLHLLNPNIKYGDI 73 (149)
T ss_dssp HHHHHHHH--S-------------THHHHHHHHHHHHHHH-----T-----------TTEEEESHHHHHTTSTTS--SS-
T ss_pred HHHHHHHhcccccCccccccccCcHHHHHHHHHHHHHHHh----hC-----------CCeEEeeeeeEEecCCCcccCcc
Confidence 34667777777777777777765 45555666676664 22 33778999988777665 899
Q ss_pred eEEEecCCCCCchhhHHHHHHHHHh
Q 006658 94 DALCVGPCYATRHDDFFGKLFRMLQ 118 (636)
Q Consensus 94 D~l~v~P~~v~r~~~FF~~l~~~L~ 118 (636)
|++=... | .|+-.|+-++.
T Consensus 74 DilqTNa----r--~flI~laflI~ 92 (149)
T PF03296_consen 74 DILQTNA----R--TFLINLAFLIK 92 (149)
T ss_dssp EEEESTH----H--HHHHHHHHHHH
T ss_pred hhhhccc----H--HHHHHHHHHHh
Confidence 9964332 2 56555554444
No 59
>COG1391 GlnE Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms]
Probab=40.29 E-value=1.4e+02 Score=36.93 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=29.4
Q ss_pred EEEEeeeeecCCC--CCCCceeEEEecCCCCCc------hhhHHHHHHHHHhc
Q 006658 75 KLFTFGSYRLGVA--GPSTDIDALCVGPCYATR------HDDFFGKLFRMLQE 119 (636)
Q Consensus 75 kI~~FGSy~lGv~--~p~SDID~l~v~P~~v~r------~~~FF~~l~~~L~~ 119 (636)
.++..|=--+|-. .=.||||++++.|..-.. +.+||..+.+.|-+
T Consensus 173 ~l~VlgMGKlGa~ELNysSDIDlIf~y~~~~~t~g~~~dn~~fFtRl~qrLIr 225 (963)
T COG1391 173 GLLVLGMGKLGARELNYSSDIDLIFVYPESGPTQGGELDNAEFFTRLGQRLIR 225 (963)
T ss_pred ceEEEeccccCccccccccccceEEEeCCCCCccCCccchHHHHHHHHHHHHH
Confidence 4444444444444 346999999998865433 23699998887765
No 60
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=39.90 E-value=14 Score=38.87 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.0
Q ss_pred eeeeecCCCCCCCceeEEEec
Q 006658 79 FGSYRLGVAGPSTDIDALCVG 99 (636)
Q Consensus 79 FGSy~lGv~~p~SDID~l~v~ 99 (636)
-||+.-|+..|+||+|+=-|.
T Consensus 16 sGS~~yGf~spdSDyDvR~V~ 36 (248)
T COG3541 16 SGSHLYGFPSPDSDYDVRGVH 36 (248)
T ss_pred ccccccCCCCCCCccceeeEE
Confidence 399999999999999985543
No 61
>COG2413 Predicted nucleotidyltransferase [General function prediction only]
Probab=38.84 E-value=52 Score=33.90 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.4
Q ss_pred EEEeeeeecCCCCCCCceeEEEecCC
Q 006658 76 LFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 76 I~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
=+.+||.+.|=--|+||+|+.+.-|-
T Consensus 40 ~~v~gSvarGDV~p~SDvDV~I~~~v 65 (228)
T COG2413 40 AVVYGSVARGDVRPGSDVDVAIPEPV 65 (228)
T ss_pred hEEEeeeeccCcCCCCCceEEEecCC
Confidence 45789999998899999999987753
No 62
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=37.01 E-value=27 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=24.8
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006658 17 TKELEKILVDEKLFASEEESLGRVEVLGRLDG 48 (636)
Q Consensus 17 t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ 48 (636)
+++|.+.|+++|+..++.. ..|+++|..++.
T Consensus 6 ~~~L~~wL~~~gi~~~~~~-~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKSA-KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHH
Confidence 5789999999998766655 688888887764
No 63
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=36.92 E-value=67 Score=39.95 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=39.3
Q ss_pred hhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCC----------CCCchhhHHHHHHHHHhc
Q 006658 59 MDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPC----------YATRHDDFFGKLFRMLQE 119 (636)
Q Consensus 59 ~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~----------~v~r~~~FF~~l~~~L~~ 119 (636)
.+.|.|+.......+.-|+-+|-++-+=-+-+||||++.|... ..+ ...||..+.+.|.+
T Consensus 667 ~~~G~p~~~~~~~~~~aViamGKlGg~EL~y~SDlDlifvy~~~~~~~t~g~~~~~-~~~~~~rl~qrli~ 736 (943)
T PRK11072 667 KRHGEPPHLEGRERGFAVIGYGKLGGKELGYASDLDLVFLHDCPEDAMTDGDKSID-GRQFYLRLAQRIIH 736 (943)
T ss_pred HHhCCCCCccCCCCCEEEEeecCccCCccCCcccceEEEEeecCccccCCCCCccc-HHHHHHHHHHHHHH
Confidence 3457652111122346788888877777788999999999851 111 13799998888776
No 64
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=36.57 E-value=58 Score=35.61 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=54.8
Q ss_pred eEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeee
Q 006658 74 AKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQ 152 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~ 152 (636)
.++-.-||.|=|-.+ .+|||++|..... . . +.+.|.++++|.++..-.+.+|-++.--..|++||+-++.
T Consensus 181 ~~~~~aGs~RR~ret-v~DiD~~~s~~~~-~---~----v~~~~~~~~~~~~vi~~G~~k~s~~~~~~~~~svD~r~v~ 250 (326)
T COG1796 181 IQASIAGSLRRGRET-VGDIDILISTSHP-E---S----VLEELLEMPNVQEVIAKGETKVSMLLILDEGTSVDFRVVP 250 (326)
T ss_pred heeeeccchhhcccc-ccceeeEeccCCc-H---H----HHHHHhcCCCcceeeecCCceeeEEEEecCCCeeEEEEcC
Confidence 556677899988766 5899998876431 1 1 5555666889999999999999999888899999998765
No 65
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=31.40 E-value=27 Score=38.22 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.9
Q ss_pred EEEeeeeecCCCCCCCceeEEEec
Q 006658 76 LFTFGSYRLGVAGPSTDIDALCVG 99 (636)
Q Consensus 76 I~~FGSy~lGv~~p~SDID~l~v~ 99 (636)
+..+||..-|+.+|+||+|.--|+
T Consensus 6 ~~~~GShaYG~~tp~SD~D~rGV~ 29 (330)
T PHA02603 6 KGLFGSHLYGTSTPESDVDYKGIF 29 (330)
T ss_pred EEecccceeCCCCCCcccccceee
Confidence 457999999999999999986655
No 66
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=31.36 E-value=1.5e+02 Score=37.21 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=36.9
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCc----hhhHHHHHHHHHhc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATR----HDDFFGKLFRMLQE 119 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r----~~~FF~~l~~~L~~ 119 (636)
.+.-|+.+|+|+-+=-.+.||||++++.+..... ...||..+.+.|.+
T Consensus 214 ~~~aviamGklG~~EL~~~SDiDLi~ly~~~~~~~~~~~~~~~~rl~q~l~~ 265 (1007)
T PRK14109 214 VRLAVIAMGKCGARELNYVSDVDVIFVAEPAEGVDEAAALAVATRLASELMR 265 (1007)
T ss_pred CCeEEEEeccccccccCCccCCCEEEEeCCCCCcccccHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998643211 12678888777765
No 67
>PRK05092 PII uridylyl-transferase; Provisional
Probab=28.59 E-value=92 Score=38.56 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=27.2
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
.+.-|...|.|+-|--.|.||||++++.+.
T Consensus 104 ~~~alvA~GgyGr~EL~p~SDiDLl~l~~~ 133 (931)
T PRK05092 104 ERLAVLAVGGYGRGELAPGSDIDLLFLLPY 133 (931)
T ss_pred CceEEEEecCcCCcccCCCCCceEEEEeCC
Confidence 357899999999999999999999999874
No 68
>PF15431 TMEM190: Transmembrane protein 190
Probab=27.67 E-value=35 Score=31.85 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCC--CcccchHH
Q 006658 199 NFRSTLRCLRFWAKRRGIYSNA--MGFLGGIN 228 (636)
Q Consensus 199 ~FR~llr~IK~WAK~RgIysn~--~G~LGGis 228 (636)
.|-....|+=-|||+|++|.+. .|||.||-
T Consensus 72 l~Li~~iclFWWAkRrd~~k~lh~P~fL~~~~ 103 (134)
T PF15431_consen 72 LLLICSICLFWWAKRRDMCKHLHMPRFLSGFK 103 (134)
T ss_pred HHHHHHHHHHHHHHHhchHhhccCchhhccCc
Confidence 3555677888999999998875 48887753
No 69
>PF07357 DRAT: Dinitrogenase reductase ADP-ribosyltransferase (DRAT); InterPro: IPR009953 This family consists of several bacterial dinitrogenase reductase ADP-ribosyltransferase (DRAT) proteins. Members of this family seem to be specific to Rhodospirillum, Rhodobacter and Azospirillum species. Dinitrogenase reductase ADP-ribosyl transferase (DRAT) carries out the transfer of the ADP-ribose from NAD to the Arg-101 residue of one subunit of the dinitrogenase reductase homodimer, resulting in inactivation of that enzyme. Dinitrogenase reductase-activating glycohydrolase (DRAG) removes the ADP-ribose group attached to dinitrogenase reductase, thus restoring nitrogenase activity. The DRAT-DRAG system negatively regulates nitrogenase activity in response to exogenous NH4+ or energy limitation in the form of a shift to darkness or to anaerobic conditions [].
Probab=25.97 E-value=28 Score=36.88 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=15.5
Q ss_pred CcchhhhhhhhhHHHHHHH
Q 006658 363 NAGDFRQWKGWVESRLRQL 381 (636)
Q Consensus 363 ~~e~~~~w~G~VESRlR~L 381 (636)
|.-+...++||||||+-.+
T Consensus 97 n~~EGAVLKGWVESRFGL~ 115 (262)
T PF07357_consen 97 NSPEGAVLKGWVESRFGLL 115 (262)
T ss_pred CChhhhhhhhhhhhccCcC
Confidence 4557789999999998654
No 70
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=24.67 E-value=77 Score=35.63 Aligned_cols=76 Identities=24% Similarity=0.481 Sum_probs=48.0
Q ss_pred HHHHhcCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCC---CceeE
Q 006658 22 KILVDEKLFASEEESLGRVE---VLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPS---TDIDA 95 (636)
Q Consensus 22 ~~L~~~~~~ps~EE~~~R~~---vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~---SDID~ 95 (636)
+.|+.+++-+..+...-|.. ++..+++++++.+++ + +-.+..+|||-+-+-.|. .|||+
T Consensus 128 ~~L~synv~~~~~kvmgrh~VSdLV~~V~klmeEyLrr----h-----------Nk~CicYGSySlhllNp~I~YgDIDi 192 (467)
T PHA02996 128 DALNSYNVAVISEKVMGRHNVSDLVGNVNKLMEEYLRR----H-----------NKSCICYGSYSLHLLNPEIEYGDIDI 192 (467)
T ss_pred HHHHhccccCCCccccccccccHHHHHHHHHHHHHHHh----c-----------CCceEEeeceeeeecCCccccCCcce
Confidence 56777776655454333443 566677777777764 2 244789999988777665 89999
Q ss_pred EEecCCCCCchhhHHHHHHHHHh
Q 006658 96 LCVGPCYATRHDDFFGKLFRMLQ 118 (636)
Q Consensus 96 l~v~P~~v~r~~~FF~~l~~~L~ 118 (636)
+=.-.+ .|+--|+-++.
T Consensus 193 lqTNar------~fLInlaflI~ 209 (467)
T PHA02996 193 LQTNSR------TFLINLAFLIK 209 (467)
T ss_pred eeeccH------HHHHHHHHHHh
Confidence 644332 56544444443
No 71
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=23.75 E-value=2.9e+02 Score=34.72 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=35.8
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCC-C-----chhhHHHHHHHHHhc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYA-T-----RHDDFFGKLFRMLQE 119 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v-~-----r~~~FF~~l~~~L~~ 119 (636)
.+.-|+-.|-|+-+=-.+.||||++++.+... + ....||..+.+.|..
T Consensus 185 ~~~aViamGklGg~ELn~~SDiDLifly~~~~~~~~~~~~~~~~~~rl~q~li~ 238 (986)
T PRK14108 185 SGLIVLGMGKLGAGELNYSSDIDLIVFFDETAPILGDPIEAQPFFVRLTRRLVR 238 (986)
T ss_pred CCeEEEeeccccccccCCCCCCceEEEeCCCCCCccccchHHHHHHHHHHHHHH
Confidence 35788889999888889999999999987321 1 112688888776654
No 72
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=21.80 E-value=43 Score=35.70 Aligned_cols=79 Identities=22% Similarity=0.173 Sum_probs=30.0
Q ss_pred EEEeeeeecCCCC--CCCceeEEEecCCCC--CchhhHHHHHHHHHh-cCCCccceeeecCCcccEEEEEE-cCeeeeEe
Q 006658 76 LFTFGSYRLGVAG--PSTDIDALCVGPCYA--TRHDDFFGKLFRMLQ-ETPLVEDLTPVPDARVPVIKFKF-NGVSVDLL 149 (636)
Q Consensus 76 I~~FGSy~lGv~~--p~SDID~l~v~P~~v--~r~~~FF~~l~~~L~-~~~~v~~l~~I~~A~VPIIKf~~-~GI~iDLs 149 (636)
|+.-||...--.. .=||.|++.++.... ..+.++...|.+.|- +.|+=.+.........+..-+.| +|+.|||.
T Consensus 24 V~l~GSR~n~~~~~D~fqDyDIv~~v~d~~~f~~d~~Wi~~FG~~li~q~pe~~~~~~~~~~~~~~~L~~f~dg~rIDlt 103 (282)
T PF04439_consen 24 VILNGSRANPNAPKDEFQDYDIVYVVTDIESFIKDDSWIDQFGERLIMQKPEDMDLFPPDLGNWFSYLMLFEDGNRIDLT 103 (282)
T ss_dssp EEE----------------EEEEEEES-HHHHHT-SGGGGGG--EEEEE-TTS-SSS---STT-EEEEEEETTS-EEEEE
T ss_pred EEEecCCCCCCCCccccccccEEEEecchhhhhhcchHHHHhChHHhEecccccccCCcccCCCeeEEEEecCCcEEEEE
Confidence 5566999876554 459999999986410 011123333433322 23322222222223445555666 59999999
Q ss_pred eeecc
Q 006658 150 YAQLQ 154 (636)
Q Consensus 150 fa~l~ 154 (636)
+..+.
T Consensus 104 l~~~~ 108 (282)
T PF04439_consen 104 LIPLE 108 (282)
T ss_dssp EEEGG
T ss_pred EecHH
Confidence 99875
No 73
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=20.37 E-value=4.2e+02 Score=25.10 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=43.0
Q ss_pred CeEEEEeeeee----cCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeec-CCcccEEEEEEcCeeee
Q 006658 73 NAKLFTFGSYR----LGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVP-DARVPVIKFKFNGVSVD 147 (636)
Q Consensus 73 ~~kI~~FGSy~----lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~-~A~VPIIKf~~~GI~iD 147 (636)
+.+++.+|=+. +| .+..|||+++.++. . .+...+.+.+ +. ..|. ...-+++++.+.|..+|
T Consensus 16 g~~~ylVGG~VRD~Llg--~~~~DiDi~v~~~~---~--~~~~~l~~~~----~~---~~v~~~~~f~t~~v~~~~~~~d 81 (139)
T cd05398 16 GYEAYLVGGAVRDLLLG--RPPKDIDIATDADG---P--EFAEALFKKI----GG---RVVGLGEEFGTATVVINGLTID 81 (139)
T ss_pred CceEEEECChHHHHHcC--CCCCCceEEEeCCC---H--HHHHHHHHhc----CC---cEEecCCcccEEEEEECCEEEE
Confidence 57788888774 44 47899999887742 1 3433333221 11 1222 35567778888899999
Q ss_pred Eeeeec
Q 006658 148 LLYAQL 153 (636)
Q Consensus 148 Lsfa~l 153 (636)
+...+.
T Consensus 82 i~~~R~ 87 (139)
T cd05398 82 VATLRT 87 (139)
T ss_pred Eccccc
Confidence 998875
Done!