Query 006658
Match_columns 636
No_of_seqs 229 out of 732
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 5E-118 2E-122 985.8 46.7 478 1-482 23-506 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 7E-114 3E-118 955.5 48.8 473 1-480 10-529 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 6.9E-50 2.4E-54 420.9 24.5 280 16-344 12-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 9E-50 3.1E-54 423.2 17.5 278 1-328 15-348 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 8.2E-48 2.8E-52 415.6 25.4 290 11-351 39-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 9.6E-48 3.3E-52 403.7 20.6 266 14-331 19-299 (323)
7 2b4v_A RNA editing complex pro 100.0 3E-39 1E-43 354.1 19.9 292 18-331 22-440 (468)
8 3hj4_A Minor editosome-associa 100.0 7.2E-37 2.5E-41 326.7 22.0 281 14-345 5-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 1.1E-35 3.8E-40 324.8 25.1 235 16-330 134-437 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 2.4E-10 8.1E-15 124.4 24.5 294 19-396 6-319 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 1.8E-08 6.2E-13 106.3 24.1 279 18-321 9-323 (349)
12 4at7_A Interleukin enhancer-bi 97.8 0.0027 9.1E-08 67.5 23.3 268 8-329 19-296 (364)
13 1no5_A Hypothetical protein HI 97.2 0.0007 2.4E-08 60.2 7.7 44 74-119 28-71 (114)
14 4at7_B NF90, interleukin enhan 97.2 0.016 5.5E-07 62.0 19.3 264 28-329 22-328 (383)
15 2rff_A Putative nucleotidyltra 97.1 0.0011 3.7E-08 59.2 7.4 61 37-112 10-70 (111)
16 1wot_A Putative minimal nucleo 96.8 0.0012 4.2E-08 57.2 5.5 47 41-101 7-53 (98)
17 1ylq_A Putative nucleotidyltra 96.7 0.0023 7.9E-08 55.3 6.2 28 74-101 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.9 0.024 8.1E-07 57.8 5.3 55 34-101 14-68 (272)
19 2fmp_A DNA polymerase beta; nu 94.0 0.26 8.8E-06 51.8 11.0 117 72-223 171-298 (335)
20 1kny_A Kntase, kanamycin nucle 94.0 0.058 2E-06 54.2 5.7 29 74-102 32-60 (253)
21 2bcq_A DNA polymerase lambda; 93.7 0.23 7.9E-06 52.3 9.8 116 72-223 168-292 (335)
22 2ihm_A POL MU, DNA polymerase 91.4 0.85 2.9E-05 48.4 10.5 51 72-124 175-225 (360)
23 1jaj_A DNA polymerase beta-lik 90.9 0.22 7.7E-06 47.9 5.0 112 69-224 27-143 (174)
24 3jz0_A Lincosamide nucleotidyl 88.6 0.61 2.1E-05 48.2 6.5 105 26-154 11-116 (287)
25 1jms_A Terminal deoxynucleotid 87.6 1.9 6.6E-05 46.1 9.7 51 72-123 195-246 (381)
26 3b0x_A DNA polymerase beta fam 85.9 2.7 9.3E-05 47.0 10.2 108 72-224 179-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 75.6 2.9 9.8E-05 45.5 5.5 48 72-119 153-208 (440)
28 2fcl_A Hypothetical protein TM 60.1 26 0.0009 33.0 8.0 71 72-151 32-107 (169)
29 3k7d_A Glutamate-ammonia-ligas 59.2 14 0.00047 40.9 6.7 48 72-119 233-289 (498)
30 2pbe_A AAD6, aminoglycoside 6- 52.5 9.2 0.00031 39.3 3.7 75 75-154 25-110 (294)
31 2w9m_A Polymerase X; SAXS, DNA 45.4 13 0.00044 41.6 3.7 94 76-224 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=4.9e-118 Score=985.80 Aligned_cols=478 Identities=41% Similarity=0.718 Sum_probs=448.2
Q ss_pred CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658 1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG 80 (636)
Q Consensus 1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG 80 (636)
|+|||+++||++|+++|++|+++|++++++||+||.++|++|+++|+++|++|++++++++|++ ++++..++++|++||
T Consensus 23 ~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~-~~~~~~~~~~v~~FG 101 (514)
T 1q79_A 23 TSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLP-QSVIENVGGKIFTFG 101 (514)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHTTCBCEEEEEH
T ss_pred CCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhhcccCCceEEEee
Confidence 7899999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred eeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCC
Q 006658 81 SYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPE 160 (636)
Q Consensus 81 Sy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~ 160 (636)
||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||++.||+|||+||+++...+|+
T Consensus 102 S~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~~p~ 180 (514)
T 1q79_A 102 SYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE 180 (514)
T ss_dssp HHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSBCT
T ss_pred eeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEEecCCcccCcc
Confidence 99999999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC
Q 006658 161 DLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240 (636)
Q Consensus 161 ~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~ 240 (636)
++++.|+++|++||+++++||||+|++++|+++||+.++||.++|+||+|||+||||++++||||||+|+||||++||+|
T Consensus 181 ~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~ 260 (514)
T 1q79_A 181 DLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLY 260 (514)
T ss_dssp TCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHS
T ss_pred cccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHH
Q 006658 241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEE 320 (636)
Q Consensus 241 Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~E 320 (636)
||+++++||.+||++|++|||++||+++++.++.+++++|+|+.+++|+.|+|||+||++|++|+|+||+.+|+++|++|
T Consensus 261 P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~E 340 (514)
T 1q79_A 261 PNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEE 340 (514)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHH
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccccccccccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeCCC
Q 006658 321 FQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPG 400 (636)
Q Consensus 321 f~RA~~il~~i~~~~~~W~~Lf~~~~FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~P~ 400 (636)
|+||+++|++++.++.+|.+||++++||++|++||+|++++.+++++.+|.||||||||.|+.+||+. ..+..|||||+
T Consensus 341 f~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~a~~~P~ 419 (514)
T 1q79_A 341 FKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQ 419 (514)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEEEEECSC
T ss_pred HHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCceeeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999983 34566999999
Q ss_pred CcCCCC---CCCcceEEEEEeeeecC---CCCCCCCcccchHHHHHHHHHhhhhhccccCCCcEEEEEEecCCCCCCccC
Q 006658 401 DFSENS---VKSSSQCHYFMGLGRKQ---GVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVF 474 (636)
Q Consensus 401 ~f~~~~---~~~~~~~~ffIGL~~~~---~~~~~~~~~~dl~~~i~~F~~~~v~~~~~~~~~m~i~v~~vk~~~Lp~~v~ 474 (636)
.|.+.+ ....|+++|||||+++. ........++||+.++++|+ +.|++|++|+++|+|+|+|||+++||++||
T Consensus 420 ~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~-~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~ 498 (514)
T 1q79_A 420 SFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVY-RQAINSKMFEVDMKIAAMHVKRKQLHQLLP 498 (514)
T ss_dssp CEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHH-HHHHHTTCCCTTCEEEEEEEEHHHHGGGCC
T ss_pred ccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHH-HHHhhccccCCCcEEEEEEechHHCchhhc
Confidence 997653 24578999999999865 11112456799999999999 999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 006658 475 PGGVRPPK 482 (636)
Q Consensus 475 ~~~~~p~~ 482 (636)
+++.|+.+
T Consensus 499 ~~~~~~~~ 506 (514)
T 1q79_A 499 SHVLQKKK 506 (514)
T ss_dssp --------
T ss_pred chhccCCC
Confidence 99985544
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=7.3e-114 Score=955.47 Aligned_cols=473 Identities=37% Similarity=0.695 Sum_probs=448.9
Q ss_pred CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658 1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG 80 (636)
Q Consensus 1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG 80 (636)
|+|||+++||++|++.+.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++ ++++.+++++|++||
T Consensus 10 t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~-~~~~~~~~~~V~~FG 88 (530)
T 2hhp_A 10 TGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMS-DGMARDAGGKIFTYG 88 (530)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHTBCEEEEEH
T ss_pred CCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhccccCceEEEec
Confidence 7999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred eeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCC
Q 006658 81 SYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPE 160 (636)
Q Consensus 81 Sy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~ 160 (636)
||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||++.||+|||+||+++..++|+
T Consensus 89 Sy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~ip~ 167 (530)
T 2hhp_A 89 SYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPL 167 (530)
T ss_dssp HHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSSSCBCT
T ss_pred ccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEeccccccCCc
Confidence 99999999999999999999999987 99999999999999999999999999999999999999999999998889999
Q ss_pred ccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC
Q 006658 161 DLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240 (636)
Q Consensus 161 ~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~ 240 (636)
++++.++++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||++||+|
T Consensus 168 ~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~ 247 (530)
T 2hhp_A 168 SLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLY 247 (530)
T ss_dssp TCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHS
T ss_pred ccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHH
Q 006658 241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEE 320 (636)
Q Consensus 241 Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~E 320 (636)
||+++++||.+||++|++|||++||+++++.+|.++.++|+|+.|.+|+.|+|||+||++|++|+|+||+.+|+++|++|
T Consensus 248 P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~E 327 (530)
T 2hhp_A 248 PNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQE 327 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHH
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccccccccccccccEEEEEEEeC-CcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeCC
Q 006658 321 FQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAK-NAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYP 399 (636)
Q Consensus 321 f~RA~~il~~i~~~~~~W~~Lf~~~~FF~~Yk~yl~I~v~a~-~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~P 399 (636)
|+||+++|++++.++.+|..||++++||.+|+|||+|+++++ +++++.+|.||||||+|.|+.+||+ ..++..|||||
T Consensus 328 f~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~a~~~p 406 (530)
T 2hhp_A 328 FVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFT 406 (530)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCceeeecCC
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999 35677899999
Q ss_pred CCcCCC-------------------------------------CC-----CCcceEEEEEeeeecCCCCCCCCcccchHH
Q 006658 400 GDFSEN-------------------------------------SV-----KSSSQCHYFMGLGRKQGVSPQDGEKFDMRL 437 (636)
Q Consensus 400 ~~f~~~-------------------------------------~~-----~~~~~~~ffIGL~~~~~~~~~~~~~~dl~~ 437 (636)
+.|.+. +. ...|+++|||||.++.. ..++++||+.
T Consensus 407 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~ 483 (530)
T 2hhp_A 407 KPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHI 483 (530)
T ss_dssp SCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHH
T ss_pred cccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChh
Confidence 999531 00 24688999999998742 2457899999
Q ss_pred HHHHHHHhhhhhccc-cCCC-cE-EEEEEecCCCCCCccCCCCC-CC
Q 006658 438 TVEEFKSHVVWMYSS-WKQG-MQ-IHVSHLRCQDIPDFVFPGGV-RP 480 (636)
Q Consensus 438 ~i~~F~~~~v~~~~~-~~~~-m~-i~v~~vk~~~Lp~~v~~~~~-~p 480 (636)
++++|+ +.|++|+. |+++ |+ |.|+|||+++||++||++|. ||
T Consensus 484 ~~~~F~-~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~ 529 (530)
T 2hhp_A 484 PCTEFV-NLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRP 529 (530)
T ss_dssp HHHHHH-HHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCC
T ss_pred HHHHHH-HHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCC
Confidence 999999 99999999 9886 78 99999999999999999764 44
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=6.9e-50 Score=420.92 Aligned_cols=280 Identities=21% Similarity=0.233 Sum_probs=226.4
Q ss_pred chHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCce
Q 006658 16 STKELEKILVDE--KLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDI 93 (636)
Q Consensus 16 ~t~~L~~~L~~~--~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDI 93 (636)
.+++|.+++.+. .+-||+||.++|++++++|+++++++ +| +++|++||||++|+++|+|||
T Consensus 12 ~~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~---------~p--------~~~v~~fGS~~~g~~~~~SDi 74 (349)
T 4fh3_A 12 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI---------SP--------DAELVAFGSLESGLALKNSDM 74 (349)
T ss_dssp CCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTT---------CT--------TCEEEEESHHHHTCCBSSCCE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH---------CC--------CCEEEEEeeccCCCCCCCCCE
Confidence 445666665431 46799999999999999999999753 22 589999999999999999999
Q ss_pred eEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEc-------CeeeeEeeeecccCCCCCccCccc
Q 006658 94 DALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFN-------GVSVDLLYAQLQFSVIPEDLDSLQ 166 (636)
Q Consensus 94 D~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~-------GI~iDLsfa~l~~~~~p~~l~l~~ 166 (636)
|++|+.|.....+ .++..+...+.+ ...+++.|.+|+||||||.+. |+.||++|++
T Consensus 75 Dl~v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~-------------- 137 (349)
T 4fh3_A 75 DLCVLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN-------------- 137 (349)
T ss_dssp EEEEECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC--------------
T ss_pred EEEEecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc--------------
Confidence 9999999888776 676666665554 345778899999999999973 7899999876
Q ss_pred hhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhh------C
Q 006658 167 DSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQL------Y 240 (636)
Q Consensus 167 d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl------~ 240 (636)
.+|+|+++.|..+++.+++||.++++||+|||+||||++..|+||||+|+|||+++||. +
T Consensus 138 --------------~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~l 203 (349)
T 4fh3_A 138 --------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVF 203 (349)
T ss_dssp --------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSS
T ss_pred --------------chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcC
Confidence 36999999999999999999999999999999999999999999999999999999995 3
Q ss_pred CC--------------------------------CChhhHHHHHHHHhc-cCCCCCceeecccCCCCCC---------Cc
Q 006658 241 PN--------------------------------ALPNVLVSRFFKIFA-HWKWPNPVMLCPIQYQAMP---------HH 278 (636)
Q Consensus 241 Pn--------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~~~~g~l~---------~~ 278 (636)
|+ .++++||.+||+||+ +|||.+.|+.....++.+. ..
T Consensus 204 P~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~ 283 (349)
T 4fh3_A 204 PNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATE 283 (349)
T ss_dssp CCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC----
T ss_pred chhhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhccccccc
Confidence 32 357899999999999 7999998775432222211 12
Q ss_pred ccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHcCCCCccccccc
Q 006658 279 VWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEP 344 (636)
Q Consensus 279 ~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i~~~~~~W~~Lf~~ 344 (636)
.|++..+..+..+.|+|+||++|++|+|++|+..++..|++||+||+++|++.. ...+|+.||+.
T Consensus 284 ~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 284 HTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp -----------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred ccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 233333344456789999999999999999999999999999999999998743 24589999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=9e-50 Score=423.20 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=224.7
Q ss_pred CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658 1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG 80 (636)
Q Consensus 1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG 80 (636)
++++|.++||++++ +++|++++++ .+++.+|.+.|++++++|++++++. + ++++|++||
T Consensus 15 ~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~---------~--------p~~~v~~FG 73 (353)
T 2ikf_A 15 VPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV---------D--------PLMRLYTFG 73 (353)
T ss_dssp --------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH---------C--------TTCEEEEES
T ss_pred eecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH---------C--------CCcEEEEec
Confidence 57899999999997 7899999985 5678999999999999999999753 2 268999999
Q ss_pred eee-cCCCCCCCceeEEEecCCCCCc--------------hhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEE-cCe
Q 006658 81 SYR-LGVAGPSTDIDALCVGPCYATR--------------HDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKF-NGV 144 (636)
Q Consensus 81 Sy~-lGv~~p~SDID~l~v~P~~v~r--------------~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-~GI 144 (636)
||+ +|+++|+||||++|+.|..+.. ..+++..+.+.|++.+.+.+++.|.+|+||||||++ .||
T Consensus 74 S~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~~~~i 153 (353)
T 2ikf_A 74 STVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGGGAV 153 (353)
T ss_dssp HHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEECSSSC
T ss_pred CccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEcCCCc
Confidence 998 9999999999999998753210 026888999999987778899999999999999999 599
Q ss_pred eeeEeeeecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCC-cc
Q 006658 145 SVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAM-GF 223 (636)
Q Consensus 145 ~iDLsfa~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~-G~ 223 (636)
+|||+|++. +|+++++.|..++..+++||.++++||+|||+||||+++. |+
T Consensus 154 ~~Dis~~n~----------------------------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~ 205 (353)
T 2ikf_A 154 DFDITAYRR----------------------------NGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGS 205 (353)
T ss_dssp EEEEEESCC----------------------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCC
T ss_pred EEEEEecCc----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 999999863 6999999999999999999999999999999999999999 99
Q ss_pred cchHHHHHHHHHHHhh------CC------------------------CCChhhHHHHHHHHhc-cCCCCCceeecccCC
Q 006658 224 LGGINWALLVARVCQL------YP------------------------NALPNVLVSRFFKIFA-HWKWPNPVMLCPIQY 272 (636)
Q Consensus 224 LGGiswaiLVa~vcQl------~P------------------------n~s~~~LL~~FF~~Ys-~wdW~~pV~l~~~~~ 272 (636)
||||+|+|||+++||. +| +.++++||.+||+||+ +|||.++|+.... .
T Consensus 206 lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~-~ 284 (353)
T 2ikf_A 206 ITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNR-P 284 (353)
T ss_dssp BCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSS-S
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCC-C
Confidence 9999999999999985 23 2357999999999999 8999998764311 1
Q ss_pred CCCC--CcccCCC------CCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHH
Q 006658 273 QAMP--HHVWDPR------SNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELC 328 (636)
Q Consensus 273 g~l~--~~~W~p~------~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il 328 (636)
+.+. .+.|+++ .++.++.+.|+|+||++|.+|+|++|+.++++.|++||+||++++
T Consensus 285 ~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 285 GITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp SCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 2211 1357742 222345678999999999999999999999999999999999876
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=8.2e-48 Score=415.57 Aligned_cols=290 Identities=20% Similarity=0.222 Sum_probs=240.3
Q ss_pred hhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCC
Q 006658 11 VLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPS 90 (636)
Q Consensus 11 ~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~ 90 (636)
++.-+++++|.++++. +-||+||.++|++++.+|+++++++. | +++|++|||+++|+++|+
T Consensus 39 ~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~---------p--------~~~v~~fGS~~~G~~~~~ 99 (405)
T 4e8f_A 39 NSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS---------P--------DAELVAFGSLESGLALKN 99 (405)
T ss_dssp CSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC---------T--------TCEEEEESHHHHTCCBSS
T ss_pred hHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC---------C--------CCEEEEEeeccCCCCCCC
Confidence 3445678888888885 78999999999999999999998652 2 589999999999999999
Q ss_pred CceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEE---c----CeeeeEeeeecccCCCCCccC
Q 006658 91 TDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKF---N----GVSVDLLYAQLQFSVIPEDLD 163 (636)
Q Consensus 91 SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~---~----GI~iDLsfa~l~~~~~p~~l~ 163 (636)
||||++|+.|.....+ +++..+.+.|++. ..++..|.+|+||||||.+ . ||+|||+|++.
T Consensus 100 SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~---------- 166 (405)
T 4e8f_A 100 SDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR---------- 166 (405)
T ss_dssp CCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCH----------
T ss_pred CCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeeccc----------
Confidence 9999999998866555 7899999999986 6788999999999999995 4 99999999863
Q ss_pred ccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHH-hh---
Q 006658 164 SLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVC-QL--- 239 (636)
Q Consensus 164 l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vc-Ql--- 239 (636)
+|++++..|..++..+++||.++++||+|||+||||+++.|+||||+|+|||++|| |.
T Consensus 167 ------------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~p 228 (405)
T 4e8f_A 167 ------------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKP 228 (405)
T ss_dssp ------------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSS
T ss_pred ------------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCC
Confidence 57888888888888889999999999999999999999999999999999999999 73
Q ss_pred --CCC--------------------------------CChhhHHHHHHHHhc-cCCCCCceeecccCCCCCC--CcccCC
Q 006658 240 --YPN--------------------------------ALPNVLVSRFFKIFA-HWKWPNPVMLCPIQYQAMP--HHVWDP 282 (636)
Q Consensus 240 --~Pn--------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~~~~g~l~--~~~W~p 282 (636)
+|+ .++++||.+||+||+ +|||.+.|+......+.+. .+.|..
T Consensus 229 pvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~ 308 (405)
T 4e8f_A 229 PVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTS 308 (405)
T ss_dssp CSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC
T ss_pred CcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccccccccccc
Confidence 232 468999999999999 8999998765321122222 246876
Q ss_pred CCC-------ccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHcCCCCcccccccccccccc
Q 006658 283 RSN-------QRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSF 351 (636)
Q Consensus 283 ~~~-------~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i~~~~~~W~~Lf~~~~FF~~Y 351 (636)
... ..++.+.|+|+||++|.+|+|++|+..++..|++||+||+++|++... +.+|+.||+++++..+.
T Consensus 309 ~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 309 ATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp -------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGGSCCCCC---
T ss_pred cccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHhCcCCCcccc
Confidence 521 113457899999999999999999999999999999999999998432 57899999999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-48 Score=403.67 Aligned_cols=266 Identities=21% Similarity=0.315 Sum_probs=228.1
Q ss_pred hhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCce
Q 006658 14 VISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDI 93 (636)
Q Consensus 14 ~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDI 93 (636)
-.+++||.++++ .+.||+||.+.|++++++|+++++++. | +++|++|||+++|+++|+|||
T Consensus 19 ~~L~~Ei~~f~~--~i~Pt~eE~~~R~~~~~~l~~~~~~~~---------p--------~~~v~~fGS~~~g~~~~~SDi 79 (323)
T 3nyb_A 19 DWLTFEIKDFVA--YISPSREEIEIRNQTISTIREAVKQLW---------P--------DADLHVFGSYSTDLYLPGSDI 79 (323)
T ss_dssp HHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHHHHHHTTC---------T--------TCCEEEESTTTTTCCCTTSCE
T ss_pred HHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHC---------C--------CCEEEEeCccccCCCCCCCCc
Confidence 346777777777 488999999999999999999998652 2 478999999999999999999
Q ss_pred eEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEE--cCeeeeEeeeecccCCCCCccCccchhhcc
Q 006658 94 DALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKF--NGVSVDLLYAQLQFSVIPEDLDSLQDSLLH 171 (636)
Q Consensus 94 D~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~~p~~l~l~~d~lL~ 171 (636)
|++|+.|.......+++..+++.|++.+.+.+++.|.+|+||||||++ .||+|||+|++.
T Consensus 80 Dl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~------------------ 141 (323)
T 3nyb_A 80 DCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERT------------------ 141 (323)
T ss_dssp EEEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCS------------------
T ss_pred eEEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCc------------------
Confidence 999999876432236889999999998888999999999999999996 699999999862
Q ss_pred ccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhCCC---------
Q 006658 172 NLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPN--------- 242 (636)
Q Consensus 172 ~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~Pn--------- 242 (636)
+|++++++|.++++.+++||.++++||+|||+||||++..|+||||+|+|||+++||++|+
T Consensus 142 ----------~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~ 211 (323)
T 3nyb_A 142 ----------NGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPK 211 (323)
T ss_dssp ----------STTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGG
T ss_pred ----------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCcc
Confidence 7999999999999999999999999999999999999999999999999999999999985
Q ss_pred CChhhHHHHHHHHhc-cCCCCCceeecccCCCC---CCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHH
Q 006658 243 ALPNVLVSRFFKIFA-HWKWPNPVMLCPIQYQA---MPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQ 318 (636)
Q Consensus 243 ~s~~~LL~~FF~~Ys-~wdW~~pV~l~~~~~g~---l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~ 318 (636)
.++++||.+||+||+ +|||.+.++... +|. ...+.|..- .+.++.+.|+|+||++|.+|+++++ ..++.|+
T Consensus 212 ~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~--~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~ 286 (323)
T 3nyb_A 212 DNLGVLLIEFFELYGKNFGYDDVALGSS--DGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIK 286 (323)
T ss_dssp GCHHHHHHHHHHHHHHTCCTTTEEEEES--SSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHH
T ss_pred ccHHHHHHHHHHHhccccCCCCcEEEEe--cCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHH
Confidence 357899999999999 999999765421 221 223457542 2223457899999999999999975 4589999
Q ss_pred HHHHHHHHHHHHH
Q 006658 319 EEFQRAKELCEEI 331 (636)
Q Consensus 319 ~Ef~RA~~il~~i 331 (636)
+||++|+++|++.
T Consensus 287 ~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 287 KAFAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=3e-39 Score=354.11 Aligned_cols=292 Identities=18% Similarity=0.262 Sum_probs=208.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeee-ecCCCCCCCceeEE
Q 006658 18 KELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSY-RLGVAGPSTDIDAL 96 (636)
Q Consensus 18 ~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy-~lGv~~p~SDID~l 96 (636)
..+.+.... .-+++++.+.|+.++++|++++++|. + +++|++|||| .+|+++|+||||++
T Consensus 22 ~~i~~~~~~--~~~~~~~~~~~~~a~~~l~~~v~~~~---------p--------~a~v~~FGS~v~~Gl~lp~SDiDl~ 82 (468)
T 2b4v_A 22 KAIMAENNR--RVGPEHMFRTAIRAQQQLQGLADKWT---------P--------DAKVYCCGSMVTYGQMERGSDLDLA 82 (468)
T ss_dssp HHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC---------T--------TCEEEEETHHHHHSSCBTTCCEEEE
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHC---------C--------CcEEEEeeCchhcCCCCCCCceeEE
Confidence 344444433 33788999999999999999999873 2 5999999999 79999999999999
Q ss_pred EecCCCCCch-hhHH--HHHHHHHhcC-CC--ccceeeecCCcccEEEEEEc----------------------------
Q 006658 97 CVGPCYATRH-DDFF--GKLFRMLQET-PL--VEDLTPVPDARVPVIKFKFN---------------------------- 142 (636)
Q Consensus 97 ~v~P~~v~r~-~~FF--~~l~~~L~~~-~~--v~~l~~I~~A~VPIIKf~~~---------------------------- 142 (636)
|+.+...... .... .++...|++. ++ +.++++|.+||||||||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 162 (468)
T 2b4v_A 83 CMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDV 162 (468)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEE
T ss_pred EecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccc
Confidence 9987422211 0111 2478888875 45 58999999999999999831
Q ss_pred ------------------------------C--eeeeEeeeecc-----cCCCCCc--cC--ccchhhccccc-------
Q 006658 143 ------------------------------G--VSVDLLYAQLQ-----FSVIPED--LD--SLQDSLLHNLD------- 174 (636)
Q Consensus 143 ------------------------------G--I~iDLsfa~l~-----~~~~p~~--l~--l~~d~lL~~ld------- 174 (636)
| ..+|++|.+.. ....|+. +. +-++-....+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~ 242 (468)
T 2b4v_A 163 RNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEM 242 (468)
T ss_dssp ESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGG
T ss_pred cccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccc
Confidence 1 22556666421 0111111 00 00000000111
Q ss_pred -----hhhhhhcchhhHHHHHHhhCCCchh-hHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC--------
Q 006658 175 -----EQTVLSLNGCRVTDRILSLVPNIRN-FRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY-------- 240 (636)
Q Consensus 175 -----e~s~rSLNG~Rv~d~Il~lVP~~~~-FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~-------- 240 (636)
+-|.. .+|+++++.|..+.-.+++ ||.|+++||+|||+||||+++.|+||||+|+|||++++|..
T Consensus 243 ~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P 321 (468)
T 2b4v_A 243 FMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDP 321 (468)
T ss_dssp GSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCG
T ss_pred cceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCc
Confidence 12344 6899999999998888889 99999999999999999999999999999999999999864
Q ss_pred ---------CC------------CChhhHHHHHHHHhc-cCCCCCceeecccCCCC-CC--CcccCCCCCcc-CCCccce
Q 006658 241 ---------PN------------ALPNVLVSRFFKIFA-HWKWPNPVMLCPIQYQA-MP--HHVWDPRSNQR-DRKHLMP 294 (636)
Q Consensus 241 ---------Pn------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~~~~g~-l~--~~~W~p~~~~~-Dr~~~Mp 294 (636)
|+ .++++||.+||+||+ +|||.+.++... .|. +. .+.|....+.. ...+.|+
T Consensus 322 ~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir--~g~~~~K~~~~w~~~~n~~~~~~~~L~ 399 (468)
T 2b4v_A 322 WSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLN--RNRRSYRSDIGWNFPQNKKGTFSYNFC 399 (468)
T ss_dssp GGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSS--SSSCEEHHHHTCCCGGGEETTEECSSC
T ss_pred ccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEec--CCcceecccccccccccccCCCcceEE
Confidence 11 158999999999999 999999766321 221 11 13576422210 1134699
Q ss_pred eeCCCCC----CCCcccccChhhHHHHHHHHHHHHHHHHHH
Q 006658 295 IITPSYP----CTNSSYNVSSTTLRIMQEEFQRAKELCEEI 331 (636)
Q Consensus 295 IiTP~~P----~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i 331 (636)
|+||++| .+|+|++|+..+++.|++||++|+++|++.
T Consensus 400 IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~ 440 (468)
T 2b4v_A 400 IEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERF 440 (468)
T ss_dssp BBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 999999999999999999999999999974
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=7.2e-37 Score=326.75 Aligned_cols=281 Identities=16% Similarity=0.204 Sum_probs=214.3
Q ss_pred hhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCce
Q 006658 14 VISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDI 93 (636)
Q Consensus 14 ~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDI 93 (636)
-++|+||.++.+ .+.||++|.+.|++++.+|++++++- +| +++|++|||+.+|+++|+|||
T Consensus 5 ~~lt~EI~dFy~--~i~PT~eE~~~R~~vv~~l~~ii~~~---------~p--------~~~v~~FGS~~tgl~lp~SDi 65 (384)
T 3hj4_A 5 REFIRGMMAHYR--ASLPPPEHSVVIHELQKRVLDIGMLA---------VN--------KAHVELFGSHVSGFCTPHSDA 65 (384)
T ss_dssp HHHHHHHHHHHH--HHSCCTTHHHHHHHHHHHHHHHHHHH---------ST--------TCEEEEESHHHHSCCCTTCCE
T ss_pred hHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH---------CC--------CcEEEEeeeccCCCCCCCCCe
Confidence 467888998888 48899999999999999999999742 22 589999999999999999999
Q ss_pred eEEEecCCCCC----ch---hhHHHH---HHHHHhcCCCccceeeecCCcccEEEEEE--cCeeeeEeeeecccCCCCCc
Q 006658 94 DALCVGPCYAT----RH---DDFFGK---LFRMLQETPLVEDLTPVPDARVPVIKFKF--NGVSVDLLYAQLQFSVIPED 161 (636)
Q Consensus 94 D~l~v~P~~v~----r~---~~FF~~---l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~~p~~ 161 (636)
|+++..+.... .+ ...... +.+.+.. .+++.+. |.+|+||||||.+ .||+|||+|++.
T Consensus 66 DlvI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~~-~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~-------- 135 (384)
T 3hj4_A 66 DISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASA-MGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI-------- 135 (384)
T ss_dssp EEEEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHHH-HTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH--------
T ss_pred eEEEecCCCcccccccchhhHHHHHHHHHHHhhccc-CCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc--------
Confidence 99998865321 01 001111 2222221 3555554 4599999999997 499999999873
Q ss_pred cCccchhhccccchhhhhhcchhhHHHHHHhhCCC-chhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC
Q 006658 162 LDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPN-IRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240 (636)
Q Consensus 162 l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~-~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~ 240 (636)
+|++++..|..+... +.+||.++++||+||++|||+++..|+||||+|+|||+++||+.
T Consensus 136 --------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~ 195 (384)
T 3hj4_A 136 --------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQEL 195 (384)
T ss_dssp --------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcC
Confidence 588888888888776 56799999999999999999999999999999999999999974
Q ss_pred C---CC------------------------------------ChhhH----HHHHHHHhccCCCCCcee-ecccCC-CCC
Q 006658 241 P---NA------------------------------------LPNVL----VSRFFKIFAHWKWPNPVM-LCPIQY-QAM 275 (636)
Q Consensus 241 P---n~------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~-l~~~~~-g~l 275 (636)
| +. ++++| |.+||+||++|||.+-|+ ++++.. +.+
T Consensus 196 ~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~ 275 (384)
T 3hj4_A 196 GLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTV 275 (384)
T ss_dssp TSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHH
T ss_pred CCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccc
Confidence 3 21 26777 999999999999999755 443221 110
Q ss_pred ------------C---CcccCCC----------------------CCccCCCccceeeCCCCCCCCcccccChhhHHHHH
Q 006658 276 ------------P---HHVWDPR----------------------SNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQ 318 (636)
Q Consensus 276 ------------~---~~~W~p~----------------------~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~ 318 (636)
+ -+.|... ...+..+.++.|+| +.-.+||++.|+.+....|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 354 (384)
T 3hj4_A 276 YERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQ 354 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHH
T ss_pred cchhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHH
Confidence 1 1235210 01122356899999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccc
Q 006658 319 EEFQRAKELCEEIEAGKRTWITLFEPY 345 (636)
Q Consensus 319 ~Ef~RA~~il~~i~~~~~~W~~Lf~~~ 345 (636)
.||+||++|+.+-. ++..++++|...
T Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (384)
T 3hj4_A 355 QEFNRLREMLIDKE-SELKFDEVFRES 380 (384)
T ss_dssp HHHHHHHHHHTTTG-GGCCHHHHTCCC
T ss_pred HHHHHHHHHHhccc-ccccHHHHhhhc
Confidence 99999999998632 234666666543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=324.76 Aligned_cols=235 Identities=15% Similarity=0.219 Sum_probs=190.6
Q ss_pred chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeE
Q 006658 16 STKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDA 95 (636)
Q Consensus 16 ~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~ 95 (636)
.+++|.++++ .+-||++|.+.|..++.+|++++++. +| +++|++|||+.+|+++|+||||+
T Consensus 134 l~~EI~~f~~--~i~PT~eE~~~R~~vv~~le~ii~~~---------fP--------~a~V~~FGS~~tGL~lp~SDIDl 194 (464)
T 3pq1_A 134 IDDQLNTLLK--EFQLTEENTKLRYLTCSLIEDMAAAY---------FP--------DCIVRPFGSSVNTFGKLGCDLDM 194 (464)
T ss_dssp HHHHHHHHHH--HHBCCHHHHHHHHHHHHHHHHHHTTT---------ST--------TCEEEEEGGGTSSCCBTTCCEEE
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH---------CC--------CCEEEEeCCCccCCCCCCCCeEE
Confidence 4567777776 46799999999999999999999742 23 58999999999999999999999
Q ss_pred EEecCCCCC----------------------c--hhhHHHHHHHHHhc-CCCccceeeecCCcccEEEEEEc--CeeeeE
Q 006658 96 LCVGPCYAT----------------------R--HDDFFGKLFRMLQE-TPLVEDLTPVPDARVPVIKFKFN--GVSVDL 148 (636)
Q Consensus 96 l~v~P~~v~----------------------r--~~~FF~~l~~~L~~-~~~v~~l~~I~~A~VPIIKf~~~--GI~iDL 148 (636)
++..+.... | .+.++..+.+.|++ .+++.+++.|.+||||||||.+. ||+|||
T Consensus 195 vl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DI 274 (464)
T 3pq1_A 195 FLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCAL 274 (464)
T ss_dssp EEECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEE
T ss_pred EEecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEE
Confidence 886553210 0 01356667778877 37889999999999999999996 999999
Q ss_pred eeeecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcc-cchH
Q 006658 149 LYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGF-LGGI 227 (636)
Q Consensus 149 sfa~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~-LGGi 227 (636)
+|++. +|++++..|..+...+++||.|+++||+||++|||+++..|+ ||||
T Consensus 275 S~nn~----------------------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSY 326 (464)
T 3pq1_A 275 TTNNR----------------------------IALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNF 326 (464)
T ss_dssp ECSCT----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHH
T ss_pred ecCCC----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcH
Confidence 99873 588999999988888999999999999999999999999997 9999
Q ss_pred HHHHHHHHHHhhC-----CC------------------------------------CChhhHHHHHHHHhccCCCCCcee
Q 006658 228 NWALLVARVCQLY-----PN------------------------------------ALPNVLVSRFFKIFAHWKWPNPVM 266 (636)
Q Consensus 228 swaiLVa~vcQl~-----Pn------------------------------------~s~~~LL~~FF~~Ys~wdW~~pV~ 266 (636)
+|+|||++++|.. |+ .++++||..||+||++|||.+.|+
T Consensus 327 sL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vI 406 (464)
T 3pq1_A 327 SLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXX 406 (464)
T ss_dssp HHHHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCC
T ss_pred HHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCccccc
Confidence 9999999999974 21 146899999999999999997543
Q ss_pred ecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHH
Q 006658 267 LCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEE 330 (636)
Q Consensus 267 l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~ 330 (636)
.| ..|++.||+.+.+++++.|+++|..||+.
T Consensus 407 ---------------------------sI------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 407 ---------------------------XX------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp ---------------------------CC------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------------------cc------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 12 78999999999999999999999999994
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.31 E-value=2.4e-10 Score=124.35 Aligned_cols=294 Identities=17% Similarity=0.150 Sum_probs=185.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCC-CceeEEE
Q 006658 19 ELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPS-TDIDALC 97 (636)
Q Consensus 19 ~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~-SDID~l~ 97 (636)
-+.++|+ .+-|+++|.+.=+++.+.|...+++ . +.+++..|||+-|.++++ ||||+.+
T Consensus 6 ~~~~~l~--~i~P~~~E~~~~~~~~~~I~~~L~~-~------------------~~~v~~~GS~AkgT~Lrg~sDIDIfv 64 (437)
T 1r89_A 6 ILEKALE--LVIPDEEEVRKGREAEEELRRRLDE-L------------------GVEYVFVGSYARNTWLKGSLEIDVFL 64 (437)
T ss_dssp HHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHH-H------------------TCCEEEEHHHHHTCCCTTCCEEEEEE
T ss_pred HHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHh-C------------------CCeEEEeccccCCCcCCCCCCceEEE
Confidence 3456665 3779999998888888888777765 1 247889999999999997 9999999
Q ss_pred ecCCCCCchhhH----HHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCCccCccchh-hccc
Q 006658 98 VGPCYATRHDDF----FGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDS-LLHN 172 (636)
Q Consensus 98 v~P~~v~r~~~F----F~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~~l~l~~d~-lL~~ 172 (636)
+.|....++ ++ +..+.+.|.+ . .+..|.-|-+...+.|+++|+.=|-- +.+.. +...
T Consensus 65 ~f~~~~~~e-~l~~~~l~~~~e~l~~------~-~~~ya~hpyV~~~f~g~~vDVVP~y~----------v~~g~~~~ta 126 (437)
T 1r89_A 65 LFPEEFSKE-ELRERGLEIGKAVLDS------Y-EIRYAEHPYVHGVVKGVEVDVVPCYK----------LKEPKNIKSA 126 (437)
T ss_dssp EECTTSCHH-HHHHHHHHHHHHHSSS------E-EEEESSSEEEEEEETTEEEEEEEEEC----------CSSSSCCCSH
T ss_pred EcCCCCCHH-HHHHHHHHHHHHHHHH------h-hhhccCCceEEEEecceEEEEEEEEE----------ccCCcccccc
Confidence 998876654 33 2223333332 1 24556678888889999999985421 11110 1111
Q ss_pred cchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCC--CCcccchHHHHHHHHHHHhhCCCCChhhHHH
Q 006658 173 LDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSN--AMGFLGGINWALLVARVCQLYPNALPNVLVS 250 (636)
Q Consensus 173 lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn--~~G~LGGiswaiLVa~vcQl~Pn~s~~~LL~ 250 (636)
+|- ...-++++.+...+ ++..+|.+|.|.|.-|+|++ ..++++||.+=||++++ .+-..+|.
T Consensus 127 vDr-------tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~ 190 (437)
T 1r89_A 127 VDR-------TPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVK 190 (437)
T ss_dssp HHH-------HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHH
T ss_pred ccC-------cHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHH
Confidence 110 01233444443333 88999999999999999997 45789999999999994 12223333
Q ss_pred HHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHH
Q 006658 251 RFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEE 330 (636)
Q Consensus 251 ~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~ 330 (636)
..+ +|..++.++-. .+ ... .| ..+.|+||.+|..|+|.+++..++..+..+-+...+ +
T Consensus 191 ----~~~--~w~~~~~Id~~-~~--------~~~--~~--~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~---~ 248 (437)
T 1r89_A 191 ----NAR--RWTRRTVIDVA-KG--------EVR--KG--EEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFME---A 248 (437)
T ss_dssp ----HHT--TCCTTEEEEGG-GT--------EEE--EC--SSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHH---S
T ss_pred ----HHH--HhCCCeEEecC-CC--------ccc--CC--CCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHh---C
Confidence 333 56556665421 10 000 12 358899999999999999999998888876665432 2
Q ss_pred HHcCCCCccccccccc--------cc----cccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEe
Q 006658 331 IEAGKRTWITLFEPYH--------FF----GSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCR 396 (636)
Q Consensus 331 i~~~~~~W~~Lf~~~~--------FF----~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~ 396 (636)
-+ ..+|.|.+ +- .+-.+.+.|.....+.-+=. .-|-++--.+.|...||+....++...
T Consensus 249 -----ps-~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D~-l~pQl~k~~~~i~~~L~~~gF~v~~~~ 319 (437)
T 1r89_A 249 -----PS-LGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDDN-LYPQLERASRKIFEFLERENFMPLRSA 319 (437)
T ss_dssp -----CC-GGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHHH-HHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred -----cc-HHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCccc-chHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 11 22332211 11 11234666666555532222 347777777888888888544455444
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.07 E-value=1.8e-08 Score=106.33 Aligned_cols=279 Identities=13% Similarity=0.137 Sum_probs=143.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcC-eEEEEeeeeecCCCCCC-CceeE
Q 006658 18 KELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEAN-AKLFTFGSYRLGVAGPS-TDIDA 95 (636)
Q Consensus 18 ~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~-~kI~~FGSy~lGv~~p~-SDID~ 95 (636)
++|.+++.+ .+-|+.++...=+.+++.|...+++-. .+.+ . .... .+++.+|||+-|.++++ ||||+
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~----~~~~----~--~~~~v~~v~~~GSyargT~lrg~sDiDl 77 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC----FQGT----A--DPVRVSKVVKGGSSGKGTTLRGRSDADL 77 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT----TCC---------CCEEEEEEEEEEC--------CEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh----cccc----c--CCcceEEEEEecCcCCCcccCCCCceeE
Confidence 357888853 578999888776677777776665421 1100 0 0012 37889999999999986 99999
Q ss_pred EEecCCCCCch------hhHHHHHHHHHhcC---CCcc-ceeeec--CCccc-EEEEEE------cCeeeeEeeeecccC
Q 006658 96 LCVGPCYATRH------DDFFGKLFRMLQET---PLVE-DLTPVP--DARVP-VIKFKF------NGVSVDLLYAQLQFS 156 (636)
Q Consensus 96 l~v~P~~v~r~------~~FF~~l~~~L~~~---~~v~-~l~~I~--~A~VP-IIKf~~------~GI~iDLsfa~l~~~ 156 (636)
+++.+...+.+ ..+...+.+.|.+. ..+. .. .|. .-..| .+.|.+ .|++|||+=|--...
T Consensus 78 vV~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~-ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~ 156 (349)
T 1px5_A 78 VVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTF-EVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALG 156 (349)
T ss_dssp EEEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEE-EECCC------CCEEEEEETTTTEEEEEEEEEEECSSC
T ss_pred EEEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccce-eEecccccCCceEEEEEEccCcCCceEEEEEEehhhhc
Confidence 99988754332 13444455555531 1121 11 121 11345 366666 479999886543211
Q ss_pred CCCCccCccchh----hccc----cchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHH
Q 006658 157 VIPEDLDSLQDS----LLHN----LDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGIN 228 (636)
Q Consensus 157 ~~p~~l~l~~d~----lL~~----lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGis 228 (636)
.+...-. .+.. ++.. -+......-.-..-.+++.. +...++.++|.+|+|-++.+. ....+.+.||.
T Consensus 157 ~~~~~~~-~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~ 231 (349)
T 1px5_A 157 QWTPGYK-PNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYA 231 (349)
T ss_dssp SCCTTSC-CCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHH
T ss_pred ccccccC-CChHHHHHHHhhccccccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhh-cccCCCCChHH
Confidence 1100000 0111 1110 00000000001111233332 346899999999999988764 22346789999
Q ss_pred HHHHHHHHHhhCCCC---ChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCC--CCccC--CCccceeeCCCCC
Q 006658 229 WALLVARVCQLYPNA---LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPR--SNQRD--RKHLMPIITPSYP 301 (636)
Q Consensus 229 waiLVa~vcQl~Pn~---s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~--~~~~D--r~~~MpIiTP~~P 301 (636)
+-+|+++.....++. +..+-+..+|++-++|.- ..|......+ +. ++. .+... +...--|+||++|
T Consensus 232 lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i~w~~~y~----~~--~~~~~~fl~~~l~~~~p~I~DP~dp 304 (349)
T 1px5_A 232 LELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCIFWEAYYD----FT--NPVVGRCMLQQLKKPRPVILDPADP 304 (349)
T ss_dssp HHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEECCCSSCC----SS--SHHHHHHHHHHHTSSSCEEBCTTCT
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-cceeeecccc----cc--chhHHhhhhhhhcCCCCeeeCCCCC
Confidence 999999988876543 455667788887777631 1222111000 00 000 00000 0011369999999
Q ss_pred CCCcccccChhhHHHHHHHH
Q 006658 302 CTNSSYNVSSTTLRIMQEEF 321 (636)
Q Consensus 302 ~~Nsa~nVs~stl~~I~~Ef 321 (636)
..|++.. +......+..|.
T Consensus 305 ~~NVa~~-~~~~~~~~~~~A 323 (349)
T 1px5_A 305 TGNVGGG-DTHSWQRLAQEA 323 (349)
T ss_dssp TCBTTCS-CHHHHHHHHHHH
T ss_pred CCcccCC-chhhHHHHHHHH
Confidence 9999887 766777776443
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.84 E-value=0.0027 Score=67.51 Aligned_cols=268 Identities=16% Similarity=0.114 Sum_probs=161.7
Q ss_pred CCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCC
Q 006658 8 APTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVA 87 (636)
Q Consensus 8 ~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~ 87 (636)
.|.+.|-..++.|++-=. .+.||++|..+=..++.++++++...+. +.|.- + -.=..|...|||.-|.+
T Consensus 19 k~~~~d~~~~~~llkr~~--~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~-e----~~L~~V~rVGs~aKgtl 87 (364)
T 4at7_A 19 KPAPDETSFSEALLKRNQ--DLAPNSAEQASILSLVTKINNVIDNLIV----APGTF-E----VQIEEVRQVGSYKKGTM 87 (364)
T ss_dssp SCCCCCHHHHHHHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTC-S----SCEEEEEEEHHHHHTCC
T ss_pred CCCCChHHHHHHHHhcCC--ccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCcc-c----cccceeEEeccccCCce
Confidence 355566677666666444 5899999999988888998888876553 22211 0 01157889999999999
Q ss_pred CCC-CceeEEEecCCCCCch--hhHHHHHHHHHhcCCCccceee-ecCCcccEEEEEEcCeeeeEeeeecccCCCCCccC
Q 006658 88 GPS-TDIDALCVGPCYATRH--DDFFGKLFRMLQETPLVEDLTP-VPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLD 163 (636)
Q Consensus 88 ~p~-SDID~l~v~P~~v~r~--~~FF~~l~~~L~~~~~v~~l~~-I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~~l~ 163 (636)
+.| -|+|++|++..-.+.+ +..-.++.+-|+....-..+.. +.+|-+= |+-....+.|=|...+ .++.
T Consensus 88 l~G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~-I~~~~~~v~i~It~ts-------p~lr 159 (364)
T 4at7_A 88 TTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFE-ISSSDATVKILITTVP-------PNLR 159 (364)
T ss_dssp CTTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEE-EECSSCEEEEEEEECH-------HHHH
T ss_pred ecCCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEE-EecCCCcEEEEEEeCC-------hhhc
Confidence 887 6789999997766663 0123444455554211111111 1111111 1000001222222222 1111
Q ss_pred ccchhhccccc-hhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhCC-
Q 006658 164 SLQDSLLHNLD-EQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYP- 241 (636)
Q Consensus 164 l~~d~lL~~ld-e~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~P- 241 (636)
-.+.. ..+| ..|..+|-.+|-+..+..-..+ ...+.++|++|.-.++.. .++.|.++++-+|+.+..-.-|
T Consensus 160 k~dp~--~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~ 232 (364)
T 4at7_A 160 KLDPE--LHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPT 232 (364)
T ss_dssp TCCTT--TBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTT
T ss_pred cCChh--HhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCC
Confidence 11111 1233 4577888899999888877764 667889999999666642 2356888666666666655544
Q ss_pred --CCChhhHHHHHHHHhcc-CCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCC-CCCcccccChhhHHHH
Q 006658 242 --NALPNVLVSRFFKIFAH-WKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYP-CTNSSYNVSSTTLRIM 317 (636)
Q Consensus 242 --n~s~~~LL~~FF~~Ys~-wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P-~~Nsa~nVs~stl~~I 317 (636)
..++++-+.++|+..+. +=.|. . --|.||+.+ ..++..+.+......|
T Consensus 233 ~~~l~~~~afRRVLElLAsGillp~----------~------------------~Gi~DPCE~~~~~v~~~lt~qq~e~i 284 (364)
T 4at7_A 233 RQPLALNVAYRRCLQILAAGLFLPG----------S------------------VGITDPCESGNFRVHTVMTLEQQDMV 284 (364)
T ss_dssp SSCCCHHHHHHHHHHHHHTTTTSTT----------B------------------CCCBCTTSSSCCBGGGGSCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCcccCC----------C------------------CCCcCCCCCCCcchhccCCHHHHHHH
Confidence 36789999999998762 21111 1 113467766 5677777777777888
Q ss_pred HHHHHHHHHHHH
Q 006658 318 QEEFQRAKELCE 329 (636)
Q Consensus 318 ~~Ef~RA~~il~ 329 (636)
..--|.+.+++.
T Consensus 285 t~sAQ~~LRlla 296 (364)
T 4at7_A 285 CYTAQTLVRILS 296 (364)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877777777664
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.23 E-value=0.0007 Score=60.22 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=32.6
Q ss_pred eEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhc
Q 006658 74 AKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQE 119 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~ 119 (636)
.+++.|||++-|-+.++||||++++.+...+.. + +..+...|.+
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~-~-~~~l~~~l~~ 71 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFL-A-RDRLKEAFSE 71 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCCHH-H-HHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCCHH-H-HHHHHHHHHh
Confidence 589999999999999999999999987543321 2 2344555554
No 14
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.23 E-value=0.016 Score=61.99 Aligned_cols=264 Identities=15% Similarity=0.158 Sum_probs=158.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC---------hHHHhh------------hcCeEEEEeeeee
Q 006658 28 KLFASEEESLGRVEVLGRLDGIVK---DWIKRVTMDKGIS---------DEEQIQ------------EANAKLFTFGSYR 83 (636)
Q Consensus 28 ~~~ps~EE~~~R~~vl~~L~~ivk---~w~~~v~~~~g~~---------~~~~~~------------~~~~kI~~FGSy~ 83 (636)
.+||++||.+.=+.++..+++.+| +|+.+-.+..+-. ++...+ ..=.-|.-+|+|.
T Consensus 22 ~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~la 101 (383)
T 4at7_B 22 SVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLVA 101 (383)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEeceec
Confidence 589999999999999999998776 6776432211100 000000 0112356689999
Q ss_pred cCCCCCC-CceeEEEecCCCCCchhhHHHHHHHHHh----cC-CCccce-eeecCCcccEEEEEEcCeeeeEeeeecccC
Q 006658 84 LGVAGPS-TDIDALCVGPCYATRHDDFFGKLFRMLQ----ET-PLVEDL-TPVPDARVPVIKFKFNGVSVDLLYAQLQFS 156 (636)
Q Consensus 84 lGv~~p~-SDID~l~v~P~~v~r~~~FF~~l~~~L~----~~-~~v~~l-~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~ 156 (636)
-|+.+.| -+.|+|+++..-.|+ .+...+.+.|. .. ++-.++ ..+.+|-+=|-.-....+.|=|++.+....
T Consensus 102 KGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~r 179 (383)
T 4at7_B 102 KGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR 179 (383)
T ss_dssp HTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHHH
T ss_pred ccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCcccc
Confidence 9999865 789999999887776 56666555554 32 111122 223344221110001134555555543110
Q ss_pred ----CCC--CccCccchhhccccc-hhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHH
Q 006658 157 ----VIP--EDLDSLQDSLLHNLD-EQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINW 229 (636)
Q Consensus 157 ----~~p--~~l~l~~d~lL~~ld-e~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGisw 229 (636)
... +.+...+ .--.|| ..|+.+|-.+|-+..+.+...+......++|++|.-.++.. .++-|.++++
T Consensus 180 e~~~~~~~~~~~~~~d--p~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~waL 253 (383)
T 4at7_B 180 EEMEKVLAGETLSVND--PPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGWPL 253 (383)
T ss_dssp HHHHHHHTTCCCCCCC--CTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTHHH
T ss_pred cchhhcccccccccCC--hhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHhHH
Confidence 000 1111111 111233 46888888889888887777777778899999999777652 2356887777
Q ss_pred HHHHHHHHhhCC--CCChhhHHHHHHHHhccCC-CCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCC--CCCC
Q 006658 230 ALLVARVCQLYP--NALPNVLVSRFFKIFAHWK-WPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSY--PCTN 304 (636)
Q Consensus 230 aiLVa~vcQl~P--n~s~~~LL~~FF~~Ys~wd-W~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~--P~~N 304 (636)
=+|+.+..-. + ..++++-+.++|+..+..- .+. -=-|.||+. |..|
T Consensus 254 ELL~~~ai~s-~~~~l~~~~afRRVLEllasG~lLp~----------------------------~pgI~DPcEk~pt~~ 304 (383)
T 4at7_B 254 ELLCEKSIGT-ANRPMGAGEALRRVLECLASGIVMPD----------------------------GSGIYDPCEKEATDA 304 (383)
T ss_dssp HHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTTTSTT----------------------------SCCCBCTTCSSCCBT
T ss_pred HHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcCcccCC----------------------------CCCccCCCCCCCccc
Confidence 7777776643 3 3578999999999987421 111 012457777 6666
Q ss_pred cccccChhhHHHHHHHHHHHHHHHH
Q 006658 305 SSYNVSSTTLRIMQEEFQRAKELCE 329 (636)
Q Consensus 305 sa~nVs~stl~~I~~Ef~RA~~il~ 329 (636)
.+ ..+.-....|..+-+.+..++.
T Consensus 305 ~~-~lt~qq~e~it~sAQ~~LR~~a 328 (383)
T 4at7_B 305 IG-HLDRQQREDITQSAQHALRLAA 328 (383)
T ss_dssp TT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cCCHHHHHHHHHHHHHHHHHHh
Confidence 65 5667778889988888777765
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.09 E-value=0.0011 Score=59.22 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHH
Q 006658 37 LGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGK 112 (636)
Q Consensus 37 ~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~ 112 (636)
..++++++.+++++....++ . + .-..++.|||++-|-+.++||||++++.+..... +++..
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~----~--~-------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~--~~~~~ 70 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS----F--P-------NLEEVYIFGSRARGDYLDTSDIDILFVFKGIKEM--NVFDR 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----C--T-------TEEEEEEESHHHHSCCCTTCCEEEEEEESSCTTC--CHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH----c--C-------CccEEEEEeeeecCCCCCCCCEEEEEEecCCCCh--hHHHH
Confidence 45677777777777655432 1 1 1257999999999999999999999988653332 45543
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.85 E-value=0.0012 Score=57.20 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 41 EVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 41 ~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
+++..+++.+....++ .|. ..++.|||++-|-+.++||||++++.+.
T Consensus 7 ~~l~~l~~~i~~l~~~----~~v----------~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 7 ETLRARREAVLSLCAR----HGA----------VRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHHHHHHHHHH----HTC----------SSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHHHHHHHHHH----cCC----------cEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 5666666665544332 221 4699999999999999999999998764
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.72 E-value=0.0023 Score=55.28 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=26.3
Q ss_pred eEEEEeeeeecCCCCCC-CceeEEEecCC
Q 006658 74 AKLFTFGSYRLGVAGPS-TDIDALCVGPC 101 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~-SDID~l~v~P~ 101 (636)
.+++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 78999999999999999 99999999875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.95 E-value=0.024 Score=57.75 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCC
Q 006658 34 EESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPC 101 (636)
Q Consensus 34 EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~ 101 (636)
-|.-.|+.+...|+++++...+. .+ .-.+|+.||||.-|-+.++||||++++...
T Consensus 14 ~~~~~~q~Vq~eL~~ive~L~~~----~~---------~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 14 RENLYFQGVQHTIARWVDRLREE----YA---------DAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH----CT---------TEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hhccChHHHHHHHHHHHHHHHHh----cC---------CceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 34556777777777766544332 11 116799999999999999999999999765
No 19
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.04 E-value=0.26 Score=51.85 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=77.6
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCch---hhHHHHHHHHHhcCCCccceeeecCCcccEE-EEEE------
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRH---DDFFGKLFRMLQETPLVEDLTPVPDARVPVI-KFKF------ 141 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~---~~FF~~l~~~L~~~~~v~~l~~I~~A~VPII-Kf~~------ 141 (636)
...++..-||||=|-.+ ..|||+|+..|.....+ ..++..+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 35899999999999877 56999999988432211 1578888889999888887766666654333 3322
Q ss_pred -cCeeeeEeeeecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCC
Q 006658 142 -NGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNA 220 (636)
Q Consensus 142 -~GI~iDLsfa~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~ 220 (636)
.|+.|||.++.... -.-.++-+-.+. . -.|.++.||+++|+.=|-
T Consensus 250 ~~~~rVDl~~vp~~~------------------------------~~~aLl~fTGS~-~---fnr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQ------------------------------YYCGVLYFTGSD-I---FNKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGG------------------------------HHHHHHHHHCCH-H---HHHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHH------------------------------HHHHHHHhhCCH-H---HHHHHHHHHHHcCCcccc
Confidence 27999999876321 011222222222 2 347788899999887777
Q ss_pred Ccc
Q 006658 221 MGF 223 (636)
Q Consensus 221 ~G~ 223 (636)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 775
No 20
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=93.98 E-value=0.058 Score=54.20 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=26.1
Q ss_pred eEEEEeeeeecCCCCCCCceeEEEecCCC
Q 006658 74 AKLFTFGSYRLGVAGPSTDIDALCVGPCY 102 (636)
Q Consensus 74 ~kI~~FGSy~lGv~~p~SDID~l~v~P~~ 102 (636)
..|+.|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 57999999999999999999999987653
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.69 E-value=0.23 Score=52.27 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=75.5
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeec-----CCcc-cEEEEEE---c
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVP-----DARV-PVIKFKF---N 142 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~-----~A~V-PIIKf~~---~ 142 (636)
...++..-||||=|-.+ ..|||+|+..|...... .++..+.+.|.+.+.++++-... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~-~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHR-GIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTT-TCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhhh-hHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 45999999988755443 78888889999888877654331 1121 1112221 5
Q ss_pred CeeeeEeeeecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCc
Q 006658 143 GVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMG 222 (636)
Q Consensus 143 GI~iDLsfa~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G 222 (636)
|+.|||.++.... + .-.++-+-.+.. -.|.++.||+++|+-=|-+|
T Consensus 246 ~~rVDl~~vp~~~--~----------------------------g~ALl~fTGS~~----fnr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSE--F----------------------------ACALLYFTGSAH----FNRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGG--H----------------------------HHHHHHHHCCHH----HHHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHH--H----------------------------HHHHHHhhCCHH----HHHHHHHHHHHcCCCccccc
Confidence 7899999875321 0 112222222221 34788899999988777777
Q ss_pred c
Q 006658 223 F 223 (636)
Q Consensus 223 ~ 223 (636)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 5
No 22
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=91.38 E-value=0.85 Score=48.39 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=41.3
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCcc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVE 124 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~ 124 (636)
...++..-||||=|-.+ ..|||+|+..|...... .++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~-~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEV-GLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTT-THHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhhh-hHHHHHHHHHHhCCCee
Confidence 45799999999999877 45999999988754333 78888989998877766
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=90.85 E-value=0.22 Score=47.86 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=72.2
Q ss_pred hhhcCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhc--CCCcc-ceeeecCCcccEEEEEE--cC
Q 006658 69 IQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQE--TPLVE-DLTPVPDARVPVIKFKF--NG 143 (636)
Q Consensus 69 ~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~--~~~v~-~l~~I~~A~VPIIKf~~--~G 143 (636)
++..++++..-||||=|-.+-+ |||+|+..|.. ..+.+.|.+ .+.++ ++..-.+.++-+ ++.. .|
T Consensus 27 ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~~ 96 (174)
T 1jaj_A 27 IKILSKNIVAVGSLRREEKMLN-DVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKKT 96 (174)
T ss_dssp EEECTTTEEEEEHHHHTCSEEC-CEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSCC
T ss_pred ccCCCcEEEEeccccCCCCCCC-CEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCCc
Confidence 3345778999999999988765 99999988751 245556776 77777 665444554333 3332 68
Q ss_pred eeeeEeeeecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcc
Q 006658 144 VSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGF 223 (636)
Q Consensus 144 I~iDLsfa~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~ 223 (636)
+.|||.++.... + .-.++-+-.+.. -.+.++.||+++|+.=|.+|.
T Consensus 97 ~rVDl~~vp~~~--f----------------------------g~ALl~fTGSk~----hn~~lR~~A~~kG~~L~e~Gl 142 (174)
T 1jaj_A 97 YQLDLFTALAEE--K----------------------------PYAIFHFTGPVS----YLIRIRAALKKKNYKLNQYGL 142 (174)
T ss_dssp EEEEEEEEETTC--H----------------------------HHHHHHHHSCHH----HHHHHHHHHHHTTEEEETTEE
T ss_pred eEEEEEEeCHHH--H----------------------------HHHHHHhHCCHH----HHHHHHHHHHHcCCCcCcccc
Confidence 999999886421 0 112222222221 337788899999987777774
Q ss_pred c
Q 006658 224 L 224 (636)
Q Consensus 224 L 224 (636)
.
T Consensus 143 ~ 143 (174)
T 1jaj_A 143 F 143 (174)
T ss_dssp E
T ss_pred c
Confidence 3
No 24
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=88.64 E-value=0.61 Score=48.15 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=55.3
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEeeeeecCCCCCCCceeEEEecCCCCCc
Q 006658 26 DEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATR 105 (636)
Q Consensus 26 ~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r 105 (636)
..|+.|.---.+..+++++.|.+.+++-. .=-.|+.+||+..|-...-||||+++++.....
T Consensus 11 ~~~~~~~~~~m~~~~e~l~~I~~~~~~d~-----------------~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~- 72 (287)
T 3jz0_A 11 SSGLVPRGSHMLKQKELIANVKNLTESDE-----------------RITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT- 72 (287)
T ss_dssp -----------CHHHHHHHHHHHHHHHCT-----------------TEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT-
T ss_pred ccCcCCCCCCccCHHHHHHHHHHHHhcCC-----------------CEEEEEEECCccCCCCCCccceeEEEEEcCcch-
Confidence 34677776667777777777776664210 114588999999999999999999998743111
Q ss_pred hhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEE-cCeeeeEeeeecc
Q 006658 106 HDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKF-NGVSVDLLYAQLQ 154 (636)
Q Consensus 106 ~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-~GI~iDLsfa~l~ 154 (636)
+ .| .. ..-|.....+-- .....++ ...+.| +|+.||+.|+.+.
T Consensus 73 ~-~f-~~-~~Wl~~fG~~~~--~f~~~~~-~~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 73 S-NF-DS-SNWLFDVAPYLM--LYKNEYG-TEVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp T-TC-CH-HHHHHHHCCEEE--EEECTTS-CEEEEETTSCEEEEEEEEGG
T ss_pred h-hh-hh-HHHHHHhhhhhe--Eeecccc-eEEEEecCCcEEEEEEeeHH
Confidence 1 12 11 122222111110 1122233 224445 6999999999875
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=87.56 E-value=1.9 Score=46.06 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=38.5
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCch-hhHHHHHHHHHhcCCCc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRH-DDFFGKLFRMLQETPLV 123 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~-~~FF~~l~~~L~~~~~v 123 (636)
...++..-||||=|--+- .|||+|+..|...... ..++..+.+.|.+.+.|
T Consensus 195 ~~~~v~i~GSyRRgket~-gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i 246 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMTG-HDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLL 246 (381)
T ss_dssp TTCEEEECHHHHTTCSCB-SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCcEEEEccccccCCCCc-CCeEEEEeCCCccccchhhHHHHHHHHHHhCCCc
Confidence 357899999999998775 5999999988643211 12777888888887766
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=85.88 E-value=2.7 Score=46.99 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=71.6
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeee
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYA 151 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa 151 (636)
...++..-||||=|-.+- .|||+|+..|.. ..+.+.|.+.+.|.++......++-+ ++ -.|+.|||.++
T Consensus 179 ~~~~~~~~Gs~RRgke~~-gDiD~li~~~~~--------~~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~ 247 (575)
T 3b0x_A 179 GVERAELCGSARRYKDTV-GDLDFLVASREG--------ERAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVV 247 (575)
T ss_dssp TCCEEEECHHHHTTCSEE-SSEEEEEECSSH--------HHHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEE
T ss_pred CCcEEEEccccccCCCcc-CCeEEEEeCCCH--------HHHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEE
Confidence 357899999999998775 499999988752 13556677778887765544544333 11 26999999988
Q ss_pred ecccCCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCccc
Q 006658 152 QLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFL 224 (636)
Q Consensus 152 ~l~~~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~L 224 (636)
.... + .-.++-+-.+.. -.|.++.||++||+-=|-+|..
T Consensus 248 ~~~~--~----------------------------~~al~~~TGs~~----~n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 248 PPES--Y----------------------------GAGLQYLTGSAA----HSIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp CGGG--H----------------------------HHHHHHHHCCHH----HHHHHHHHHHHTTCEEETTEEE
T ss_pred CHHH--H----------------------------HHHHHHhhCCHH----HHHHHHHHHHHcCCCcchhhcc
Confidence 6321 0 112232222221 3478899999999888888864
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=75.63 E-value=2.9 Score=45.45 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=36.8
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCC-CC-------chhhHHHHHHHHHhc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCY-AT-------RHDDFFGKLFRMLQE 119 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~-v~-------r~~~FF~~l~~~L~~ 119 (636)
.+.-|+.+|||+=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999997643 11 112689888887665
No 28
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=60.05 E-value=26 Score=33.02 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=43.8
Q ss_pred cCeEEEEeeeeec---CCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcc--cEEEEEEcCeee
Q 006658 72 ANAKLFTFGSYRL---GVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARV--PVIKFKFNGVSV 146 (636)
Q Consensus 72 ~~~kI~~FGSy~l---Gv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~V--PIIKf~~~GI~i 146 (636)
.+..-...|||++ |+-.+.-|||+++-. .=...+.++|.+. +......-.+... -...+.+.|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~--------~da~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTDE--------EGAYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEECH--------HHHHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEecc--------cCHHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEE
Confidence 4566788899987 666788999998721 2234577777753 2222222222221 134566689999
Q ss_pred eEeee
Q 006658 147 DLLYA 151 (636)
Q Consensus 147 DLsfa 151 (636)
||...
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99964
No 29
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=59.16 E-value=14 Score=40.89 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=37.4
Q ss_pred cCeEEEEeeeeecCCCCCCCceeEEEecCCCCC---------chhhHHHHHHHHHhc
Q 006658 72 ANAKLFTFGSYRLGVAGPSTDIDALCVGPCYAT---------RHDDFFGKLFRMLQE 119 (636)
Q Consensus 72 ~~~kI~~FGSy~lGv~~p~SDID~l~v~P~~v~---------r~~~FF~~l~~~L~~ 119 (636)
.+.-|.-+|+++-+=-..+||||++++.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 568899999999999999999999999864321 113689888777654
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=52.55 E-value=9.2 Score=39.26 Aligned_cols=75 Identities=13% Similarity=-0.046 Sum_probs=35.0
Q ss_pred EEEEeeeeecCC--CCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeec--------CCcccEEEEEE-cC
Q 006658 75 KLFTFGSYRLGV--AGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVP--------DARVPVIKFKF-NG 143 (636)
Q Consensus 75 kI~~FGSy~lGv--~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~--------~A~VPIIKf~~-~G 143 (636)
-|+..||+..+- ...-||+|+++++... + .|... ...|.+..++-.++... .-.-|..-+.| +|
T Consensus 25 Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~---~-~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~dg 99 (294)
T 2pbe_A 25 LVTLEGSRTNRNIPPDNFQDYDISYFVTDV---E-SFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDG 99 (294)
T ss_dssp EEEEC------------CCCEEEEEEESCH---H-HHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTS
T ss_pred EEEEecCCCCCCCCCCCcccceEEEEEcCc---h-Hhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecCC
Confidence 477889999855 7888999999998642 1 33221 11222222221111100 11224444445 59
Q ss_pred eeeeEeeeecc
Q 006658 144 VSVDLLYAQLQ 154 (636)
Q Consensus 144 I~iDLsfa~l~ 154 (636)
+.|||.|..+.
T Consensus 100 ~rIDl~~~~~~ 110 (294)
T 2pbe_A 100 NKLDLTLIPIR 110 (294)
T ss_dssp CEEEEEEEEGG
T ss_pred cEEEEEEecHH
Confidence 99999999875
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=45.36 E-value=13 Score=41.61 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=59.1
Q ss_pred EEEeeeeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeeccc
Q 006658 76 LFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQF 155 (636)
Q Consensus 76 I~~FGSy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~ 155 (636)
+..-||||=|-.+-+ |||+|+.. . .+ .. |.+.+.|+ .-...++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~---~~-~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-T---PD-DV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-C---HH-HH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-C---hH-HH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 889999999988765 99998876 2 11 21 55566665 222333222 23 89999999886321
Q ss_pred CCCCCccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHH-HHHHHHHHHcCCCCCCCccc
Q 006658 156 SVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTL-RCLRFWAKRRGIYSNAMGFL 224 (636)
Q Consensus 156 ~~~p~~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~ll-r~IK~WAK~RgIysn~~G~L 224 (636)
+ .-.++-+-. .-. |.++.||++||+.=|-+|..
T Consensus 243 --~----------------------------~~al~~~TG------~~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 --R----------------------------GALDLLRSG------EHFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp --H----------------------------HHHHHHTSC------HHHHHHHHHHHHTTTCEEETTEEE
T ss_pred --H----------------------------HHHHHHHhh------hhHHHHHHHHHHHcCCCcChhhcc
Confidence 0 112232222 123 78889999999888888865
Done!