Query 006659
Match_columns 636
No_of_seqs 347 out of 3298
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 12:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0449 GlmS Glucosamine 6-pho 100.0 1E-113 3E-118 916.2 57.4 579 1-636 1-597 (597)
2 PTZ00394 glucosamine-fructose- 100.0 2E-106 3E-111 907.6 63.1 622 1-636 1-670 (670)
3 PLN02981 glucosamine:fructose- 100.0 5E-106 1E-110 907.6 63.4 624 1-636 1-680 (680)
4 KOG1268 Glucosamine 6-phosphat 100.0 5E-104 1E-108 802.7 49.9 608 1-636 1-670 (670)
5 PTZ00295 glucosamine-fructose- 100.0 2E-99 4E-104 855.1 63.5 592 1-636 24-640 (640)
6 PRK00331 glucosamine--fructose 100.0 1.3E-98 3E-103 847.4 62.2 583 1-636 1-604 (604)
7 TIGR01135 glmS glucosamine--fr 100.0 1.7E-97 4E-102 838.8 61.5 586 2-636 1-607 (607)
8 PRK11382 frlB fructoselysine-6 100.0 1.6E-51 3.5E-56 431.2 37.5 326 272-633 8-338 (340)
9 COG2222 AgaS Predicted phospho 100.0 7.9E-49 1.7E-53 402.3 32.4 331 272-634 3-339 (340)
10 TIGR02815 agaS_fam putative su 100.0 1.7E-48 3.6E-53 412.1 35.4 337 273-635 4-363 (372)
11 PRK06388 amidophosphoribosyltr 100.0 4.5E-39 9.8E-44 344.8 20.6 206 1-250 19-240 (474)
12 PRK07272 amidophosphoribosyltr 100.0 1.5E-38 3.3E-43 341.0 20.5 207 1-250 11-234 (484)
13 cd00714 GFAT Glutamine amidotr 100.0 6.7E-38 1.5E-42 306.9 20.9 203 2-244 1-212 (215)
14 PRK07631 amidophosphoribosyltr 100.0 3.8E-38 8.3E-43 337.2 20.6 206 1-250 11-232 (475)
15 PRK07349 amidophosphoribosyltr 100.0 7.6E-38 1.6E-42 336.4 21.4 203 1-244 33-253 (500)
16 PRK06781 amidophosphoribosyltr 100.0 1.4E-37 3E-42 333.7 20.1 200 1-244 11-224 (471)
17 COG0034 PurF Glutamine phospho 100.0 1.1E-37 2.5E-42 318.4 17.2 206 1-246 4-224 (470)
18 PRK08341 amidophosphoribosyltr 100.0 2E-37 4.2E-42 330.0 18.7 198 1-244 4-213 (442)
19 PRK09123 amidophosphoribosyltr 100.0 4.4E-37 9.6E-42 330.9 20.6 206 1-249 21-242 (479)
20 PRK07847 amidophosphoribosyltr 100.0 5.7E-37 1.2E-41 330.4 19.5 208 1-250 23-252 (510)
21 PRK05793 amidophosphoribosyltr 100.0 9.2E-37 2E-41 329.1 20.4 208 1-250 14-237 (469)
22 PRK08525 amidophosphoribosyltr 100.0 9E-37 2E-41 327.5 19.4 200 1-244 1-215 (445)
23 KOG0572 Glutamine phosphoribos 100.0 2.5E-36 5.4E-41 298.0 17.8 216 1-250 1-237 (474)
24 PLN02440 amidophosphoribosyltr 100.0 1.1E-35 2.4E-40 321.5 20.7 205 1-249 1-222 (479)
25 PRK09246 amidophosphoribosyltr 100.0 1E-35 2.3E-40 323.9 19.6 215 1-249 1-235 (501)
26 cd01907 GlxB Glutamine amidotr 100.0 1.7E-35 3.7E-40 295.6 18.1 218 2-244 1-246 (249)
27 TIGR01134 purF amidophosphorib 100.0 8.4E-34 1.8E-38 304.7 20.5 202 2-244 1-215 (442)
28 cd00715 GPATase_N Glutamine am 100.0 4.4E-33 9.5E-38 280.1 19.5 200 2-244 1-215 (252)
29 cd00352 Gn_AT_II Glutamine ami 100.0 1E-28 2.2E-33 244.5 20.9 205 2-244 1-219 (220)
30 cd05010 SIS_AgaS_like AgaS-lik 100.0 5.6E-29 1.2E-33 228.9 14.4 141 493-635 1-147 (151)
31 TIGR03442 conserved hypothetic 100.0 6.9E-28 1.5E-32 240.1 15.8 206 1-244 1-238 (251)
32 PLN02549 asparagine synthase ( 99.9 4.1E-26 8.9E-31 252.2 26.6 176 1-254 1-190 (578)
33 COG0367 AsnB Asparagine syntha 99.9 2.9E-26 6.3E-31 252.3 24.2 167 1-244 1-184 (542)
34 PTZ00077 asparagine synthetase 99.9 1.1E-26 2.3E-31 257.6 17.7 175 1-246 1-189 (586)
35 cd00712 AsnB Glutamine amidotr 99.9 3E-26 6.6E-31 226.2 16.2 148 2-226 1-151 (220)
36 PRK09431 asnB asparagine synth 99.9 6.6E-26 1.4E-30 250.4 16.7 172 1-249 1-186 (554)
37 PRK08674 bifunctional phosphog 99.9 1.1E-23 2.5E-28 220.9 29.6 312 273-629 3-328 (337)
38 cd03766 Gn_AT_II_novel Gn_AT_I 99.9 1.6E-25 3.6E-30 212.5 13.3 149 1-225 1-152 (181)
39 TIGR03104 trio_amidotrans aspa 99.9 2.2E-25 4.8E-30 249.5 16.6 150 1-226 1-153 (589)
40 cd01908 YafJ Glutamine amidotr 99.9 7E-25 1.5E-29 221.2 15.4 163 33-226 39-209 (257)
41 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.9 2.4E-24 5.2E-29 200.5 16.1 152 479-634 2-153 (153)
42 TIGR03108 eps_aminotran_1 exos 99.9 4.1E-24 8.8E-29 242.7 16.4 149 1-225 1-152 (628)
43 PF13522 GATase_6: Glutamine a 99.9 1.5E-23 3.3E-28 189.3 13.4 113 94-226 10-125 (133)
44 PF00310 GATase_2: Glutamine a 99.9 1.6E-23 3.5E-28 217.8 14.1 150 60-226 166-351 (361)
45 KOG0571 Asparagine synthase (g 99.9 2.7E-22 5.8E-27 201.8 17.1 292 1-417 1-308 (543)
46 TIGR02128 G6PI_arch bifunction 99.9 7.2E-21 1.6E-25 195.3 28.0 273 315-630 17-301 (308)
47 TIGR01536 asn_synth_AEB aspara 99.9 3.9E-22 8.5E-27 219.0 14.7 148 4-226 1-151 (467)
48 cd05008 SIS_GlmS_GlmD_1 SIS (S 99.8 5.8E-20 1.3E-24 165.1 15.0 125 321-445 1-125 (126)
49 cd00713 GltS Glutamine amidotr 99.8 7.1E-20 1.5E-24 191.2 15.2 158 62-244 174-389 (413)
50 COG1737 RpiR Transcriptional r 99.8 6.2E-18 1.3E-22 172.7 19.2 148 302-450 113-262 (281)
51 PF13230 GATase_4: Glutamine a 99.8 3.4E-19 7.4E-24 179.8 5.9 184 1-223 1-193 (271)
52 TIGR03127 RuMP_HxlB 6-phospho 99.8 1.8E-17 3.9E-22 158.4 16.4 146 302-452 13-167 (179)
53 cd05005 SIS_PHI Hexulose-6-pho 99.8 2.5E-17 5.5E-22 157.3 17.3 147 302-453 16-171 (179)
54 PF13537 GATase_7: Glutamine a 99.8 3.9E-19 8.6E-24 159.0 3.6 107 102-226 1-110 (125)
55 PF01380 SIS: SIS domain SIS d 99.7 1.6E-17 3.6E-22 150.1 14.1 127 316-442 2-129 (131)
56 PRK15482 transcriptional regul 99.7 2.6E-17 5.7E-22 169.2 16.1 147 302-449 118-266 (285)
57 COG0067 GltB Glutamate synthas 99.7 7.6E-17 1.7E-21 164.8 17.7 166 60-244 173-355 (371)
58 cd05014 SIS_Kpsf KpsF-like pro 99.7 7.5E-17 1.6E-21 145.3 14.6 122 320-442 1-126 (128)
59 PRK10892 D-arabinose 5-phospha 99.7 6E-17 1.3E-21 169.9 15.8 150 302-453 30-184 (326)
60 PRK11557 putative DNA-binding 99.7 5.8E-17 1.3E-21 166.1 14.4 146 303-449 112-259 (278)
61 PRK11337 DNA-binding transcrip 99.7 5.5E-16 1.2E-20 160.1 20.4 147 302-449 123-271 (292)
62 COG0794 GutQ Predicted sugar p 99.7 5.3E-16 1.1E-20 145.8 17.7 144 307-451 26-174 (202)
63 cd05710 SIS_1 A subgroup of th 99.7 1.6E-16 3.5E-21 141.1 13.5 100 321-420 1-101 (120)
64 PRK11302 DNA-binding transcrip 99.7 1.8E-15 4E-20 155.7 18.5 147 302-450 111-259 (284)
65 cd05013 SIS_RpiR RpiR-like pro 99.7 1.6E-15 3.4E-20 138.3 15.4 134 308-444 2-136 (139)
66 PRK11543 gutQ D-arabinose 5-ph 99.7 8.4E-16 1.8E-20 161.0 15.1 145 307-452 29-178 (321)
67 PRK05441 murQ N-acetylmuramic 99.6 3.2E-15 7E-20 153.2 16.5 145 307-451 50-218 (299)
68 cd05007 SIS_Etherase N-acetylm 99.6 1.1E-14 2.3E-19 146.3 17.5 145 307-451 37-205 (257)
69 cd05006 SIS_GmhA Phosphoheptos 99.6 6.2E-15 1.4E-19 140.5 13.5 115 306-420 16-155 (177)
70 PRK11750 gltB glutamate syntha 99.6 1.1E-14 2.5E-19 170.0 16.3 220 19-277 156-432 (1485)
71 PRK14101 bifunctional glucokin 99.6 2.7E-14 5.9E-19 162.6 19.0 148 300-449 449-598 (638)
72 TIGR00393 kpsF KpsF/GutQ famil 99.6 1.8E-14 4E-19 146.9 15.9 131 320-451 1-135 (268)
73 TIGR00274 N-acetylmuramic acid 99.6 2E-14 4.4E-19 146.3 14.8 145 307-451 45-213 (291)
74 TIGR00441 gmhA phosphoheptose 99.6 1.9E-14 4.2E-19 133.5 12.8 110 310-420 2-133 (154)
75 cd01909 betaLS_CarA_N Glutamin 99.6 9.8E-15 2.1E-19 139.4 10.0 100 96-226 32-134 (199)
76 PRK00414 gmhA phosphoheptose i 99.6 6.7E-14 1.5E-18 134.4 14.4 113 307-419 28-164 (192)
77 PRK13937 phosphoheptose isomer 99.5 4.5E-14 9.8E-19 135.5 12.7 114 307-420 26-160 (188)
78 cd05017 SIS_PGI_PMI_1 The memb 99.5 9.6E-14 2.1E-18 123.1 12.9 111 321-440 1-115 (119)
79 PRK12570 N-acetylmuramic acid- 99.5 1.8E-13 3.8E-18 139.9 15.5 166 273-451 25-214 (296)
80 PRK02947 hypothetical protein; 99.5 1.2E-13 2.6E-18 138.1 13.1 111 309-419 30-170 (246)
81 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.5 2.2E-13 4.7E-18 126.6 13.9 136 308-450 2-139 (153)
82 PRK13938 phosphoheptose isomer 99.5 2.2E-13 4.8E-18 130.5 13.7 111 310-420 36-167 (196)
83 cd01910 Wali7 This domain is p 99.5 9.6E-14 2.1E-18 133.0 10.1 128 117-260 63-204 (224)
84 PRK10886 DnaA initiator-associ 99.5 1.2E-12 2.5E-17 125.4 14.3 112 310-421 32-167 (196)
85 PRK13936 phosphoheptose isomer 99.4 1.4E-12 3E-17 126.1 13.4 115 307-421 31-169 (197)
86 COG0121 Predicted glutamine am 99.4 1.7E-12 3.8E-17 128.1 11.4 130 1-166 1-137 (252)
87 COG0279 GmhA Phosphoheptose is 99.3 2E-11 4.2E-16 109.5 13.7 112 310-421 32-164 (176)
88 COG2103 Predicted sugar phosph 99.3 7.5E-12 1.6E-16 120.0 11.1 143 307-450 48-215 (298)
89 cd04795 SIS SIS domain. SIS (S 99.2 5.5E-11 1.2E-15 99.1 9.2 79 322-400 1-81 (87)
90 cd05015 SIS_PGI_1 Phosphogluco 99.2 2.5E-10 5.4E-15 106.3 13.3 105 307-412 5-127 (158)
91 PRK09533 bifunctional transald 99.1 1.7E-08 3.7E-13 116.4 25.7 286 307-627 441-754 (948)
92 KOG0573 Asparagine synthase [A 99.0 9.1E-10 2E-14 113.0 10.4 84 116-226 62-148 (520)
93 COG4821 Uncharacterized protei 99.0 3.1E-09 6.7E-14 97.8 12.7 124 309-435 28-194 (243)
94 PF10432 bact-PGI_C: Bacterial 99.0 2.1E-09 4.5E-14 99.4 10.1 134 477-631 5-149 (155)
95 PF01380 SIS: SIS domain SIS d 99.0 1.7E-09 3.7E-14 97.4 9.3 127 487-616 2-128 (131)
96 PF13580 SIS_2: SIS domain; PD 99.0 2.4E-09 5.2E-14 97.4 9.5 92 310-401 26-138 (138)
97 PTZ00295 glucosamine-fructose- 98.8 3.5E-08 7.6E-13 112.6 13.2 139 307-452 484-626 (640)
98 cd05637 SIS_PGI_PMI_2 The memb 98.8 1.5E-07 3.1E-12 84.6 13.3 125 479-623 2-132 (132)
99 PRK03868 glucose-6-phosphate i 98.6 3E-05 6.6E-10 83.0 25.8 94 318-412 57-163 (410)
100 COG0166 Pgi Glucose-6-phosphat 98.3 2.9E-05 6.2E-10 83.4 18.6 204 319-535 79-307 (446)
101 cd05013 SIS_RpiR RpiR-like pro 98.3 8.4E-06 1.8E-10 73.8 12.3 112 480-595 3-114 (139)
102 PRK00973 glucose-6-phosphate i 98.3 0.00013 2.9E-09 78.7 22.7 106 307-412 59-186 (446)
103 PRK14096 pgi glucose-6-phospha 98.3 0.00026 5.7E-09 77.5 24.4 94 318-412 113-221 (528)
104 cd05005 SIS_PHI Hexulose-6-pho 98.2 7.2E-05 1.6E-09 71.3 15.9 139 477-624 20-172 (179)
105 cd05008 SIS_GlmS_GlmD_1 SIS (S 98.2 2E-05 4.3E-10 70.4 10.9 99 492-594 1-99 (126)
106 cd05710 SIS_1 A subgroup of th 98.1 1.8E-05 3.9E-10 70.1 10.5 114 492-608 1-114 (120)
107 PRK11382 frlB fructoselysine-6 98.1 5.7E-05 1.2E-09 79.6 15.0 131 461-594 12-145 (340)
108 PRK11543 gutQ D-arabinose 5-ph 98.1 0.00018 3.9E-09 75.4 17.6 142 478-623 29-179 (321)
109 PTZ00394 glucosamine-fructose- 98.0 4.9E-05 1.1E-09 86.9 13.7 140 307-451 514-655 (670)
110 cd04795 SIS SIS domain. SIS (S 98.0 1.9E-05 4.1E-10 65.4 6.3 80 493-573 1-81 (87)
111 TIGR03127 RuMP_HxlB 6-phospho 98.0 0.0004 8.6E-09 66.2 16.3 138 477-623 17-168 (179)
112 PRK10892 D-arabinose 5-phospha 97.9 0.00063 1.4E-08 71.5 18.4 142 478-623 34-184 (326)
113 PF12481 DUF3700: Aluminium in 97.9 5.3E-05 1.1E-09 71.7 8.2 113 116-244 66-192 (228)
114 PRK14095 pgi glucose-6-phospha 97.9 0.00015 3.3E-09 79.3 13.0 95 318-413 150-258 (533)
115 PRK11302 DNA-binding transcrip 97.9 0.00033 7.1E-09 72.0 15.0 139 477-620 115-259 (284)
116 PRK11337 DNA-binding transcrip 97.8 0.00038 8.3E-09 71.9 15.2 138 478-619 128-271 (292)
117 TIGR01135 glmS glucosamine--fr 97.8 0.00028 6E-09 80.6 14.8 139 308-451 452-592 (607)
118 COG1737 RpiR Transcriptional r 97.8 0.00049 1.1E-08 70.5 14.9 141 477-621 117-263 (281)
119 COG0449 GlmS Glucosamine 6-pho 97.8 0.00026 5.6E-09 77.8 13.0 139 307-452 443-583 (597)
120 PRK00331 glucosamine--fructose 97.8 0.00045 9.7E-09 78.9 15.4 139 307-451 449-589 (604)
121 cd05014 SIS_Kpsf KpsF-like pro 97.7 0.00053 1.2E-08 61.3 12.7 99 492-594 2-100 (128)
122 PRK13937 phosphoheptose isomer 97.7 0.0019 4.1E-08 62.0 16.6 117 477-596 25-161 (188)
123 PRK11557 putative DNA-binding 97.7 0.00073 1.6E-08 69.3 14.6 137 477-620 115-260 (278)
124 PRK10886 DnaA initiator-associ 97.7 0.002 4.4E-08 61.9 16.2 117 478-595 29-166 (196)
125 PLN02981 glucosamine:fructose- 97.7 0.00074 1.6E-08 77.6 15.5 139 308-451 523-665 (680)
126 COG2222 AgaS Predicted phospho 97.7 0.0012 2.6E-08 68.9 15.4 135 461-598 7-144 (340)
127 COG0794 GutQ Predicted sugar p 97.7 0.002 4.4E-08 61.3 15.6 104 488-595 37-140 (202)
128 PRK13936 phosphoheptose isomer 97.7 0.0017 3.7E-08 62.8 15.6 119 477-596 30-169 (197)
129 PRK13938 phosphoheptose isomer 97.6 0.0019 4.1E-08 62.2 15.0 134 478-615 33-187 (196)
130 PRK15482 transcriptional regul 97.6 0.0025 5.4E-08 65.6 16.7 134 478-618 123-265 (285)
131 cd05006 SIS_GmhA Phosphoheptos 97.5 0.0033 7.2E-08 59.7 15.3 116 478-596 21-156 (177)
132 KOG0399 Glutamate synthase [Am 97.5 0.00049 1.1E-08 78.6 10.5 198 62-283 257-512 (2142)
133 TIGR02815 agaS_fam putative su 97.5 0.0025 5.3E-08 68.1 15.1 118 462-580 8-135 (372)
134 TIGR00393 kpsF KpsF/GutQ famil 97.4 0.0013 2.9E-08 66.9 12.2 131 492-626 2-140 (268)
135 cd05010 SIS_AgaS_like AgaS-lik 97.4 0.0019 4.1E-08 59.6 11.6 125 322-451 1-133 (151)
136 PRK00414 gmhA phosphoheptose i 97.4 0.0044 9.5E-08 59.7 14.6 133 478-615 32-186 (192)
137 PRK02947 hypothetical protein; 97.3 0.011 2.3E-07 59.4 16.3 99 477-576 27-143 (246)
138 PRK14101 bifunctional glucokin 97.3 0.004 8.7E-08 71.5 14.9 138 477-619 455-598 (638)
139 PRK14097 pgi glucose-6-phospha 97.2 0.0048 1E-07 67.1 13.0 112 308-419 61-202 (448)
140 TIGR00441 gmhA phosphoheptose 97.1 0.0026 5.7E-08 58.9 9.3 113 481-597 2-135 (154)
141 PRK05441 murQ N-acetylmuramic 97.1 0.013 2.8E-07 60.4 14.5 152 467-621 38-218 (299)
142 PLN02649 glucose-6-phosphate i 97.0 0.028 6E-07 62.5 17.4 93 318-412 146-259 (560)
143 cd05017 SIS_PGI_PMI_1 The memb 97.0 0.0043 9.2E-08 54.8 8.7 100 492-596 1-100 (119)
144 PRK00179 pgi glucose-6-phospha 96.9 0.024 5.2E-07 62.9 15.8 101 318-419 144-264 (548)
145 PF00342 PGI: Phosphoglucose i 96.7 0.017 3.7E-07 63.5 12.8 187 318-518 95-309 (486)
146 PF13580 SIS_2: SIS domain; PD 96.5 0.028 6.1E-07 51.0 10.9 97 477-574 22-138 (138)
147 PRK08674 bifunctional phosphog 96.5 0.038 8.3E-07 58.2 13.0 128 459-594 4-133 (337)
148 cd05007 SIS_Etherase N-acetylm 96.4 0.17 3.7E-06 51.1 16.9 154 463-620 21-204 (257)
149 PF10740 DUF2529: Protein of u 96.2 0.033 7.1E-07 51.3 9.2 106 310-419 29-136 (172)
150 PRK12570 N-acetylmuramic acid- 96.2 0.18 3.9E-06 52.0 15.8 142 477-622 45-215 (296)
151 TIGR02128 G6PI_arch bifunction 95.9 0.095 2.1E-06 54.3 12.3 105 486-595 17-122 (308)
152 TIGR00274 N-acetylmuramic acid 95.7 0.43 9.2E-06 49.0 15.9 143 477-623 44-215 (291)
153 TIGR01701 Fdhalpha-like oxidor 95.5 0.43 9.2E-06 55.9 16.8 125 366-501 198-356 (743)
154 PTZ00430 glucose-6-phosphate i 95.4 0.032 6.9E-07 61.9 7.0 86 318-403 141-248 (552)
155 cd02767 MopB_ydeP The MopB_yde 95.3 0.37 7.9E-06 54.6 15.1 125 366-501 163-319 (574)
156 cd05015 SIS_PGI_1 Phosphogluco 95.0 0.19 4.2E-06 46.6 10.1 120 479-600 6-145 (158)
157 cd02753 MopB_Formate-Dh-H Form 94.2 1.5 3.3E-05 49.0 16.6 124 365-501 155-290 (512)
158 PRK09939 putative oxidoreducta 93.8 1.3 2.8E-05 51.8 15.2 56 366-421 208-282 (759)
159 COG4821 Uncharacterized protei 93.5 2.6 5.7E-05 39.9 13.5 152 478-630 26-219 (243)
160 cd02754 MopB_Nitrate-R-NapA-li 92.8 3.7 8E-05 46.6 16.9 123 366-501 157-293 (565)
161 TIGR01591 Fdh-alpha formate de 92.1 3.5 7.5E-05 47.9 15.7 123 366-501 155-289 (671)
162 COG0279 GmhA Phosphoheptose is 91.7 7.2 0.00016 36.0 13.6 114 479-595 30-163 (176)
163 cd02762 MopB_1 The MopB_1 CD i 91.5 5.1 0.00011 45.2 15.8 104 385-501 183-296 (539)
164 KOG1268 Glucosamine 6-phosphat 91.4 3.2 6.9E-05 44.9 12.8 140 307-451 514-655 (670)
165 cd02759 MopB_Acetylene-hydrata 91.1 5.3 0.00011 44.3 15.3 123 365-500 159-294 (477)
166 cd02755 MopB_Thiosulfate-R-lik 91.0 3.5 7.6E-05 45.4 13.6 56 365-421 155-213 (454)
167 cd02770 MopB_DmsA-EC This CD ( 90.7 1.4 3.1E-05 50.5 10.5 55 366-421 166-226 (617)
168 PTZ00254 40S ribosomal protein 90.4 5.1 0.00011 39.8 12.4 119 314-450 66-187 (249)
169 TIGR01012 Sa_S2_E_A ribosomal 90.0 8.2 0.00018 37.0 13.2 118 314-449 57-176 (196)
170 PRK04020 rps2P 30S ribosomal p 88.4 11 0.00023 36.5 12.8 92 318-417 66-159 (204)
171 cd02750 MopB_Nitrate-R-NarG-li 87.4 14 0.0003 40.7 15.0 56 365-421 169-226 (461)
172 cd02752 MopB_Formate-Dh-Na-lik 87.1 11 0.00024 43.4 14.2 57 365-422 168-227 (649)
173 cd02766 MopB_3 The MopB_3 CD i 86.5 4.7 0.0001 45.0 10.7 123 366-501 157-291 (501)
174 cd00368 Molybdopterin-Binding 85.9 9.9 0.00022 40.3 12.6 54 366-420 156-211 (374)
175 TIGR03479 DMSO_red_II_alp DMSO 85.9 22 0.00048 42.9 16.6 56 366-422 224-281 (912)
176 PF09147 DUF1933: Domain of un 84.8 2.8 6E-05 38.8 6.3 80 115-217 40-119 (201)
177 cd02769 MopB_DMSOR-BSOR-TMAOR 84.7 6.3 0.00014 45.2 10.9 106 383-501 198-319 (609)
178 TIGR00509 bisC_fam molybdopter 83.0 8.8 0.00019 45.4 11.4 107 382-501 193-315 (770)
179 TIGR01553 formate-DH-alph form 82.9 29 0.00062 42.2 15.7 56 366-422 221-278 (1009)
180 PRK13532 nitrate reductase cat 82.6 39 0.00085 40.3 16.7 56 366-422 206-265 (830)
181 cd00713 GltS Glutamine amidotr 80.9 5 0.00011 43.1 7.5 32 2-34 1-32 (413)
182 COG1029 FwdB Formylmethanofura 80.6 78 0.0017 33.1 15.4 116 306-421 66-204 (429)
183 COG0052 RpsB Ribosomal protein 78.3 56 0.0012 32.4 13.1 68 367-449 157-224 (252)
184 PRK15488 thiosulfate reductase 78.0 28 0.00062 41.0 13.4 55 366-421 196-254 (759)
185 cd02751 MopB_DMSOR-like The Mo 76.9 18 0.00039 41.5 11.0 105 383-500 196-316 (609)
186 cd02764 MopB_PHLH The MopB_PHL 76.5 36 0.00079 38.2 13.2 122 366-501 196-330 (524)
187 cd02761 MopB_FmdB-FwdB The Mop 75.9 22 0.00048 38.3 11.0 114 307-422 58-196 (415)
188 TIGR01706 NAPA periplasmic nit 75.7 79 0.0017 37.8 16.3 56 366-422 206-265 (830)
189 PRK05299 rpsB 30S ribosomal pr 75.4 43 0.00093 33.7 11.9 68 366-448 157-224 (258)
190 TIGR01011 rpsB_bact ribosomal 75.4 58 0.0012 32.1 12.6 47 366-418 155-201 (225)
191 cd02757 MopB_Arsenate-R This C 75.3 46 0.00099 37.4 13.5 57 365-422 161-221 (523)
192 cd01425 RPS2 Ribosomal protein 74.5 82 0.0018 30.1 13.8 47 365-417 126-172 (193)
193 TIGR00288 conserved hypothetic 74.4 33 0.00072 31.8 9.9 52 365-419 104-157 (160)
194 PF10432 bact-PGI_C: Bacterial 73.9 21 0.00046 32.9 8.7 103 310-413 9-122 (155)
195 KOG2446 Glucose-6-phosphate is 73.9 6.8 0.00015 41.6 5.8 74 318-391 149-228 (546)
196 PF00384 Molybdopterin: Molybd 72.8 27 0.00058 37.8 10.8 56 365-421 110-168 (432)
197 TIGR03129 one_C_dehyd_B formyl 71.5 30 0.00066 37.3 10.8 31 391-422 172-202 (421)
198 cd02765 MopB_4 The MopB_4 CD i 69.3 43 0.00094 38.0 11.7 56 366-422 159-216 (567)
199 PF01053 Cys_Met_Meta_PP: Cys/ 66.2 1.2E+02 0.0025 32.6 13.5 142 345-493 118-277 (386)
200 CHL00067 rps2 ribosomal protei 65.7 32 0.00069 34.0 8.5 47 366-418 161-207 (230)
201 TIGR00315 cdhB CO dehydrogenas 65.4 42 0.0009 31.2 8.6 89 310-401 18-134 (162)
202 cd02763 MopB_2 The MopB_2 CD i 62.7 66 0.0014 37.4 11.5 54 366-420 155-210 (679)
203 PRK08493 NADH dehydrogenase su 62.4 2.4E+02 0.0052 33.6 16.1 52 365-416 369-423 (819)
204 PRK10637 cysG siroheme synthas 62.3 2.5E+02 0.0054 30.9 17.4 80 318-401 11-105 (457)
205 COG1029 FwdB Formylmethanofura 61.6 68 0.0015 33.6 9.9 135 477-626 66-224 (429)
206 PRK15102 trimethylamine N-oxid 60.8 75 0.0016 37.9 12.0 103 386-501 246-365 (825)
207 cd02768 MopB_NADH-Q-OR-NuoG2 M 60.1 2.4E+02 0.0051 30.0 14.9 52 365-419 147-201 (386)
208 cd02771 MopB_NDH-1_NuoG2-N7 Mo 59.0 2.1E+02 0.0046 31.4 14.6 39 478-516 253-292 (472)
209 cd02760 MopB_Phenylacetyl-CoA- 58.9 1.3E+02 0.0027 35.6 13.1 56 366-422 173-231 (760)
210 TIGR02166 dmsA_ynfE anaerobic 58.7 50 0.0011 39.3 10.0 56 366-422 214-276 (797)
211 PRK14095 pgi glucose-6-phospha 55.5 54 0.0012 36.7 8.8 116 478-594 129-266 (533)
212 TIGR02164 torA trimethylamine- 55.4 78 0.0017 37.8 10.9 100 389-501 246-362 (822)
213 TIGR01973 NuoG NADH-quinone ox 55.2 43 0.00093 38.3 8.4 116 306-422 289-420 (603)
214 cd01410 SIRT7 SIRT7: Eukaryoti 55.0 29 0.00063 33.7 6.0 51 365-416 154-204 (206)
215 PRK14990 anaerobic dimethyl su 54.6 78 0.0017 37.7 10.7 55 366-421 231-292 (814)
216 COG2103 Predicted sugar phosph 54.6 1.8E+02 0.0038 29.3 11.1 108 465-580 34-170 (298)
217 PF00318 Ribosomal_S2: Ribosom 54.0 74 0.0016 31.0 8.7 46 367-418 144-189 (211)
218 TIGR01470 cysG_Nterm siroheme 52.9 2.2E+02 0.0048 27.5 12.0 80 318-401 8-102 (205)
219 cd01409 SIRT4 SIRT4: Eukaryoti 52.7 27 0.00058 35.3 5.5 55 364-419 202-256 (260)
220 cd01413 SIR2_Af2 SIR2_Af2: Arc 51.7 29 0.00064 34.1 5.5 50 365-415 170-219 (222)
221 PRK09533 bifunctional transald 51.4 75 0.0016 38.2 9.6 99 478-577 441-554 (948)
222 TIGR02693 arsenite_ox_L arseni 50.3 2.7E+02 0.0059 33.1 14.2 37 467-503 343-387 (806)
223 PF01936 NYN: NYN domain; Int 50.2 16 0.00035 32.7 3.3 48 367-417 96-145 (146)
224 cd05637 SIS_PGI_PMI_2 The memb 48.6 1.6E+02 0.0034 26.3 9.2 103 310-413 4-113 (132)
225 PRK14096 pgi glucose-6-phospha 48.5 1.8E+02 0.0039 32.6 11.4 108 489-597 113-237 (528)
226 PRK08114 cystathionine beta-ly 48.1 3.8E+02 0.0083 28.8 16.0 167 316-492 98-282 (395)
227 PRK12311 rpsB 30S ribosomal pr 47.4 93 0.002 32.5 8.5 46 366-417 152-197 (326)
228 PRK11750 gltB glutamate syntha 46.1 38 0.00082 42.2 6.2 40 2-43 15-63 (1485)
229 PF10087 DUF2325: Uncharacteri 46.1 79 0.0017 26.4 6.6 82 321-405 1-87 (97)
230 PRK08166 NADH dehydrogenase su 45.5 1.3E+02 0.0029 36.0 10.7 93 306-401 296-408 (847)
231 PRK06702 O-acetylhomoserine am 45.4 1.9E+02 0.004 31.7 11.0 53 363-417 143-205 (432)
232 TIGR00853 pts-lac PTS system, 45.3 71 0.0015 26.7 6.1 82 321-406 6-88 (95)
233 cd06167 LabA_like LabA_like pr 44.0 28 0.0006 31.5 3.8 45 366-413 99-145 (149)
234 PF00289 CPSase_L_chain: Carba 43.1 33 0.00072 29.6 3.9 47 371-419 5-53 (110)
235 PTZ00409 Sir2 (Silent Informat 42.9 44 0.00096 33.9 5.3 53 364-417 197-250 (271)
236 CHL00073 chlN photochlorophyll 42.6 3.2E+02 0.007 30.0 12.2 34 366-401 193-226 (457)
237 PRK08134 O-acetylhomoserine am 42.3 1.2E+02 0.0027 33.0 9.1 53 346-398 128-184 (433)
238 PF10740 DUF2529: Protein of u 42.2 1.7E+02 0.0037 27.4 8.5 87 478-573 26-115 (172)
239 PRK14138 NAD-dependent deacety 42.2 42 0.00091 33.5 5.0 54 365-419 177-230 (244)
240 COG4015 Predicted dinucleotide 41.6 73 0.0016 29.4 5.8 35 364-398 104-139 (217)
241 PRK04663 murD UDP-N-acetylmura 40.2 1.2E+02 0.0027 33.0 8.8 34 317-353 5-39 (438)
242 COG1648 CysG Siroheme synthase 39.9 1.1E+02 0.0023 29.9 7.3 67 320-388 73-141 (210)
243 PRK07269 cystathionine gamma-s 39.5 4.9E+02 0.011 27.6 15.4 54 364-417 133-194 (364)
244 cd05565 PTS_IIB_lactose PTS_II 38.9 1.1E+02 0.0023 25.9 6.2 74 322-399 4-78 (99)
245 cd02772 MopB_NDH-1_NuoG2 MopB_ 38.4 4.1E+02 0.0089 28.5 12.5 170 306-502 72-264 (414)
246 PRK01710 murD UDP-N-acetylmura 38.2 1.7E+02 0.0037 32.2 9.5 38 311-353 7-44 (458)
247 TIGR01470 cysG_Nterm siroheme 36.6 89 0.0019 30.2 6.2 67 320-388 70-138 (205)
248 PRK03868 glucose-6-phosphate i 36.0 2.3E+02 0.0051 30.7 9.8 18 489-506 57-74 (410)
249 TIGR00315 cdhB CO dehydrogenas 35.4 2.1E+02 0.0045 26.7 8.0 43 483-525 20-63 (162)
250 COG0773 MurC UDP-N-acetylmuram 35.4 83 0.0018 34.3 6.2 74 317-397 5-94 (459)
251 PRK02006 murD UDP-N-acetylmura 35.3 1E+02 0.0023 34.2 7.4 31 319-353 7-37 (498)
252 cd05564 PTS_IIB_chitobiose_lic 35.1 1.8E+02 0.0039 24.2 7.0 84 320-407 1-85 (96)
253 PRK05613 O-acetylhomoserine am 34.6 1.9E+02 0.0041 31.6 9.0 35 363-397 151-189 (437)
254 PF06283 ThuA: Trehalose utili 33.4 2.9E+02 0.0064 26.6 9.4 67 333-400 20-88 (217)
255 PRK07812 O-acetylhomoserine am 33.3 1.5E+02 0.0033 32.4 8.0 51 364-416 152-212 (436)
256 COG0028 IlvB Thiamine pyrophos 33.2 4.4E+02 0.0095 29.8 11.8 203 310-523 6-234 (550)
257 COG5636 Uncharacterized conser 33.0 87 0.0019 30.0 5.1 108 33-161 50-164 (284)
258 COG0166 Pgi Glucose-6-phosphat 33.0 6.1E+02 0.013 27.9 12.3 120 478-597 65-200 (446)
259 PRK07860 NADH dehydrogenase su 32.4 3.4E+02 0.0074 32.3 11.3 57 366-422 376-435 (797)
260 PRK00421 murC UDP-N-acetylmura 32.1 1.2E+02 0.0025 33.4 7.0 34 318-354 6-39 (461)
261 PLN02509 cystathionine beta-ly 31.6 7.4E+02 0.016 27.3 17.2 101 314-417 166-275 (464)
262 COG2179 Predicted hydrolase of 31.5 61 0.0013 30.2 3.8 46 367-412 36-81 (175)
263 cd01407 SIR2-fam SIR2 family o 31.4 1E+02 0.0022 30.1 5.7 49 367-416 168-216 (218)
264 PF13344 Hydrolase_6: Haloacid 31.3 34 0.00073 28.9 2.0 33 379-411 16-48 (101)
265 PTZ00408 NAD-dependent deacety 31.1 1.1E+02 0.0023 30.6 5.8 52 364-416 170-221 (242)
266 PRK00945 acetyl-CoA decarbonyl 30.7 2.7E+02 0.0058 26.2 8.0 98 310-411 25-151 (171)
267 PRK07810 O-succinylhomoserine 30.3 7.1E+02 0.015 26.7 17.7 24 374-397 166-189 (403)
268 COG1435 Tdk Thymidine kinase [ 30.3 90 0.0019 30.0 4.8 37 370-406 9-45 (201)
269 COG0290 InfC Translation initi 29.5 85 0.0018 29.2 4.3 45 370-414 21-68 (176)
270 KOG0399 Glutamate synthase [Am 29.3 1.1E+02 0.0025 37.1 6.2 31 2-34 79-110 (2142)
271 smart00481 POLIIIAc DNA polyme 29.2 58 0.0013 24.9 2.9 24 380-403 15-38 (67)
272 cd02767 MopB_ydeP The MopB_yde 29.1 2.7E+02 0.0059 31.6 9.4 37 540-576 164-202 (574)
273 PRK06718 precorrin-2 dehydroge 29.0 1.6E+02 0.0035 28.3 6.6 67 317-387 69-137 (202)
274 COG2213 MtlA Phosphotransferas 28.9 1.2E+02 0.0026 32.2 5.7 76 318-407 377-458 (472)
275 TIGR01324 cysta_beta_ly_B cyst 28.9 3.5E+02 0.0076 28.9 9.7 51 364-416 132-192 (377)
276 PF05198 IF3_N: Translation in 28.8 74 0.0016 25.5 3.4 46 368-413 13-61 (76)
277 COG1763 MobB Molybdopterin-gua 28.8 78 0.0017 29.4 4.1 33 370-402 7-39 (161)
278 COG3383 Uncharacterized anaero 28.7 4.1E+02 0.0088 31.1 10.1 144 365-521 419-582 (978)
279 COG1107 Archaea-specific RecJ- 28.7 2.5E+02 0.0055 31.5 8.4 93 483-576 336-453 (715)
280 COG3962 Acetolactate synthase 28.5 2E+02 0.0044 31.4 7.4 207 320-530 33-274 (617)
281 PRK03806 murD UDP-N-acetylmura 28.4 2E+02 0.0044 31.3 8.0 31 319-353 6-36 (438)
282 TIGR00853 pts-lac PTS system, 28.3 1.9E+02 0.0042 24.1 6.1 80 492-579 6-88 (95)
283 PRK07050 cystathionine beta-ly 27.6 4.2E+02 0.0092 28.4 10.2 34 364-397 147-184 (394)
284 COG0243 BisC Anaerobic dehydro 27.5 2.6E+02 0.0055 33.1 9.2 124 365-501 198-341 (765)
285 TIGR01701 Fdhalpha-like oxidor 27.5 3E+02 0.0066 32.4 9.7 99 477-576 119-237 (743)
286 PRK05939 hypothetical protein; 27.5 4.5E+02 0.0098 28.2 10.4 53 346-398 110-166 (397)
287 PRK08133 O-succinylhomoserine 27.3 3.4E+02 0.0073 29.1 9.4 34 364-397 143-180 (390)
288 PF13793 Pribosyltran_N: N-ter 27.2 1.5E+02 0.0032 25.8 5.4 39 363-401 44-87 (116)
289 cd02758 MopB_Tetrathionate-Ra 26.9 6.9E+02 0.015 29.4 12.4 55 366-421 211-274 (735)
290 PF14824 Sirohm_synth_M: Siroh 26.5 1.1E+02 0.0023 19.8 3.1 23 366-388 2-24 (30)
291 PRK00973 glucose-6-phosphate i 26.3 4.6E+02 0.01 28.7 10.1 67 531-597 124-201 (446)
292 COG1136 SalX ABC-type antimicr 26.0 62 0.0013 31.9 3.0 55 365-421 159-219 (226)
293 PRK05562 precorrin-2 dehydroge 25.8 2E+02 0.0043 28.3 6.5 66 321-388 87-154 (223)
294 COG3981 Predicted acetyltransf 25.4 75 0.0016 29.7 3.2 33 377-409 113-146 (174)
295 COG0626 MetC Cystathionine bet 25.3 8.8E+02 0.019 26.1 17.2 96 317-417 100-207 (396)
296 PRK04966 hypothetical protein; 24.9 2.5E+02 0.0055 22.2 5.6 56 155-211 7-62 (72)
297 COG2379 GckA Putative glycerat 24.9 8.5E+02 0.018 26.1 11.0 104 466-576 10-122 (422)
298 PRK02705 murD UDP-N-acetylmura 24.7 1.5E+02 0.0033 32.4 6.3 29 321-353 2-30 (459)
299 TIGR01087 murD UDP-N-acetylmur 24.4 3.6E+02 0.0078 29.2 9.1 29 321-353 1-29 (433)
300 PRK09129 NADH dehydrogenase su 24.1 1.2E+03 0.027 27.4 15.9 38 366-403 370-409 (776)
301 cd01412 SIRT5_Af1_CobB SIRT5_A 24.0 2E+02 0.0044 28.0 6.4 51 366-417 164-214 (224)
302 TIGR01580 narG respiratory nit 24.0 5.6E+02 0.012 31.9 10.9 37 383-420 264-300 (1235)
303 PRK05968 hypothetical protein; 24.0 6E+02 0.013 27.1 10.5 32 366-397 147-181 (389)
304 cd01979 Pchlide_reductase_N Pc 23.9 9.1E+02 0.02 25.8 12.8 81 319-401 88-188 (396)
305 cd05191 NAD_bind_amino_acid_DH 23.7 2.5E+02 0.0055 22.5 5.9 46 318-379 22-67 (86)
306 PF00265 TK: Thymidine kinase; 23.0 1E+02 0.0022 29.1 3.8 38 369-406 5-42 (176)
307 PRK01390 murD UDP-N-acetylmura 23.0 2E+02 0.0043 31.6 6.7 31 319-353 9-39 (460)
308 TIGR00644 recJ single-stranded 22.8 1.1E+03 0.024 26.5 14.6 90 309-402 44-144 (539)
309 cd01408 SIRT1 SIRT1: Eukaryoti 22.7 1.5E+02 0.0033 29.3 5.2 53 365-419 174-228 (235)
310 COG2025 FixB Electron transfer 22.6 1.7E+02 0.0038 30.3 5.6 95 316-416 192-296 (313)
311 PRK08248 O-acetylhomoserine am 22.5 4.4E+02 0.0095 28.7 9.2 34 364-397 146-183 (431)
312 PF01113 DapB_N: Dihydrodipico 21.9 2.2E+02 0.0047 24.9 5.6 33 365-400 66-98 (124)
313 PLN02242 methionine gamma-lyas 21.7 4.3E+02 0.0093 28.7 8.9 37 369-407 166-205 (418)
314 PRK06176 cystathionine gamma-s 21.7 4.5E+02 0.0098 28.0 9.0 42 376-417 147-192 (380)
315 COG0771 MurD UDP-N-acetylmuram 21.7 3.1E+02 0.0068 30.0 7.7 31 319-353 7-37 (448)
316 cd04907 ACT_ThrD-I_2 Second of 21.7 1.4E+02 0.003 24.1 3.8 36 365-402 39-74 (81)
317 cd00316 Oxidoreductase_nitroge 21.5 7.1E+02 0.015 26.4 10.6 38 365-402 151-188 (399)
318 PRK00179 pgi glucose-6-phospha 21.4 6.1E+02 0.013 28.7 10.1 27 366-392 44-71 (548)
319 PF03205 MobB: Molybdopterin g 21.2 92 0.002 28.1 3.0 34 369-402 4-37 (140)
320 PRK04690 murD UDP-N-acetylmura 20.9 2.3E+02 0.005 31.3 6.7 31 319-353 8-38 (468)
321 PRK00553 ribose-phosphate pyro 20.8 2.5E+02 0.0054 29.5 6.5 82 320-401 8-96 (332)
322 TIGR01329 cysta_beta_ly_E cyst 20.7 4.9E+02 0.011 27.7 9.0 83 313-397 79-165 (378)
323 TIGR01142 purT phosphoribosylg 20.7 1.7E+02 0.0036 31.1 5.4 39 381-419 10-48 (380)
324 PF02590 SPOUT_MTase: Predicte 20.7 6.7E+02 0.014 23.1 10.5 97 321-417 4-124 (155)
325 PLN02297 ribose-phosphate pyro 20.6 3.9E+02 0.0085 28.0 7.8 85 317-402 12-105 (326)
326 PF01993 MTD: methylene-5,6,7, 20.6 1.7E+02 0.0038 28.9 4.8 41 366-406 59-99 (276)
327 COG0731 Fe-S oxidoreductases [ 20.5 1.3E+02 0.0029 30.8 4.3 36 369-404 81-120 (296)
328 PRK00481 NAD-dependent deacety 20.3 1.9E+02 0.0042 28.7 5.4 50 366-416 177-226 (242)
329 cd02756 MopB_Arsenite-Ox Arsen 20.0 5.2E+02 0.011 30.1 9.4 18 394-412 271-288 (676)
No 1
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-113 Score=916.21 Aligned_cols=579 Identities=42% Similarity=0.721 Sum_probs=526.4
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|++.. ..++...|..+|++|++||+||+||++.+++ .+.++|..|++++|. ...
T Consensus 1 MCGIvG~i~~-----~~~~~~il~~gL~rLEYRGYDSaGiav~~~~---------------~l~~~k~~Gkv~~l~-~~~ 59 (597)
T COG0449 1 MCGIVGYIGF-----LREAIDILLEGLKRLEYRGYDSAGIAVVGDG---------------SLNVRKQVGKISNLE-ELL 59 (597)
T ss_pred CCcEEEEEcC-----CccHHHHHHHHHHHHHccCCCcccEEEEeCC---------------eEEEEEccCCHHHHH-hhh
Confidence 9999999953 3447889999999999999999999999764 899999999999763 111
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
. ..++.|+++||||||||+|.++..|+||+.+ +++++||||.|.||.+||++|..+|+.|.++||||+
T Consensus 60 ~---------~~~~~~~~gIgHTRWATHG~P~~~NAHPh~~---~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEV 127 (597)
T COG0449 60 N---------KEPLIGGVGIAHTRWATHGGPTRANAHPHSD---GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEV 127 (597)
T ss_pred c---------ccccCCceeeeeccccCCCCCCcCCCCCCCC---CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHH
Confidence 1 1235699999999999999999999999975 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFD 235 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~ 235 (636)
|+||+++++++ ++.+|++.++++|+|+|++++++++++++||++|+.+||++|+.+ +|+-.++++
T Consensus 128 i~hLi~~~~~~----------~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~sPL~iG~g~~e~f~aSD~~a~l~ 197 (597)
T COG0449 128 IAHLLEEIYDT----------SLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKGSPLVIGVGEGENFLASDVSALLN 197 (597)
T ss_pred HHHHHHHHHHh----------HHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcCCCCeEEEecCCcceEecChhhhhh
Confidence 99999988753 389999999999999999999999988999999999999999988 777788888
Q ss_pred ee----eccCCCe--eeC------CCcccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCccccc
Q 006659 236 NA----KGRNGGT--YAR------PASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKS 303 (636)
Q Consensus 236 ~~----~~~~g~~--~~~------~~~~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~ 303 (636)
++ .+.||++ ... +|...|.+...+|+....+|++|++||+|||+|||+.+++++..+.+... ...
T Consensus 198 ~t~~~~~l~dgd~~~~~~~~v~~~~g~v~r~~~~~~~~~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~---~~~ 274 (597)
T COG0449 198 FTRRFVYLEEGDIAKLTTDGVSINDGNVLRDVPVIEWDLCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELV---QNE 274 (597)
T ss_pred hhceEEEeCCCCEEEEECCcEEEecCeeeeeeEEeccChhHHhcCCCCchHHHHHHhhHHHHHHHHHhhhhhhh---hhh
Confidence 66 7889988 111 45578999999999999999999999999999999999999987655311 001
Q ss_pred ccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHH
Q 006659 304 VLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTL 383 (636)
Q Consensus 304 l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i 383 (636)
.. .+.+.++++|+|+|||+||+||+.++++|+++.++++.+.-+++|.+....+.+++++|+|||||+|.+|+
T Consensus 275 ---~~----~~~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~~~~~~L~I~ISQSGETaDTl 347 (597)
T COG0449 275 ---LD----LDILREVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTL 347 (597)
T ss_pred ---hc----hhhhcccceEEEEECcHHHHHHHHHHHHHHHHhCCCeEEEeechhhhhccCCCCCcEEEEEccCcccHHHH
Confidence 11 11567999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Q 006659 384 QALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS-TQARREAIIDG 462 (636)
Q Consensus 384 ~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~~~ 462 (636)
++++.+|++|+++++|||..+|+|++.+|+++++.+|+|..+++||+|++|+++|++|++.++..++. +.++.+.+.++
T Consensus 348 ~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~~~g~i~~~~~~~~~~~ 427 (597)
T COG0449 348 AALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRGTISEEEERSLIKE 427 (597)
T ss_pred HHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCceeeecchhHHHHHHHHHHHHHHHhHhhCccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988864 66788889999
Q ss_pred HhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCe
Q 006659 463 LCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPI 542 (636)
Q Consensus 463 l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~v 542 (636)
|..+|+.+++++..++.++++++.+.+.++++++|+|.+||+|+||||||+|++|+||++|+++|++|||+.++++++||
T Consensus 428 L~~lp~~i~~~l~~~~~i~~~a~~l~~~~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pV 507 (597)
T COG0449 428 LQKLPNHIPKVLAAEEKIKELAKRLADAKDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPV 507 (597)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccCCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcCCCcE
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 006659 543 LVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYN 622 (636)
Q Consensus 543 i~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~ 622 (636)
|++.+++...+++...++++++||+++++|..++.... ..+..+.+|.+++.++||++++|+|+||||+|+.+|+|
T Consensus 508 i~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~~~~----~~~~~i~~p~~~e~laPi~~~iPlQLLAY~iA~~kG~d 583 (597)
T COG0449 508 IAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGDVAE----DGDDLILLPEVDELLAPLLYTIPLQLLAYHIALAKGID 583 (597)
T ss_pred EEEeCcchHHHHHHHHHHHHHcCCCeEEEEecCCcccc----cCceEEecCCCcchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 99999887789999999999999999999998775211 24577888999999999999999999999999999999
Q ss_pred CCCCCCCcceeecC
Q 006659 623 VDQPRNLAKSVTTQ 636 (636)
Q Consensus 623 pd~pr~l~k~v~~~ 636 (636)
||+||||+|+||||
T Consensus 584 vD~PRnLAKsVTVE 597 (597)
T COG0449 584 VDKPRNLAKSVTVE 597 (597)
T ss_pred CCCCCccccceeeC
Confidence 99999999999997
No 2
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.6e-106 Score=907.61 Aligned_cols=622 Identities=48% Similarity=0.783 Sum_probs=525.5
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCC-CCCCCCcEEEeecccchhhhhHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSS-SVNGCPPLVFRQEGNIESLVKSV 79 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~g~~~~l~~~~ 79 (636)
||||||+++....+..+++...++.+|.+||||||||+||++.++.. +.-..++. ...++.+.++|+.|++++|.+.+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~-~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~ 79 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIG-SEKEDGTAASAPTPRPCVVRSVGNISQLREKV 79 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcc-cccccccccccCCCcEEEEECCccHHHHHHHH
Confidence 99999999643111112677899999999999999999999952100 00000000 00123589999999999988667
Q ss_pred HHHHhhh-hhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHh
Q 006659 80 YEEVAET-ELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDT 158 (636)
Q Consensus 80 f~~~~~~-~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDs 158 (636)
|++.... ..+++..+.|+++|||+||||+|.++..|+|||... ++++++||||+|+|+.+||++|..+|+.|.++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~-~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDt 158 (670)
T PTZ00394 80 FSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSN-NGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDT 158 (670)
T ss_pred hcchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCC-CCCEEEEECeeEecHHHHHHHHHHcCCEecCCChH
Confidence 6541100 111112457999999999999999888999999876 77999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc------------
Q 006659 159 EVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD------------ 226 (636)
Q Consensus 159 E~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~------------ 226 (636)
|+|++++++.+..|| ..++.+++++++++|+|+|||++++...+++||++||+|||++|+.+
T Consensus 159 Evi~~li~~~~~~~g------~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~~PL~iG~~~~~~~~~~~~~~~ 232 (670)
T PTZ00394 159 EVISVLSEYLYTRKG------IHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKGSPLMVGIRRTDDRGCVMKLQT 232 (670)
T ss_pred HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcCCceEEEecccccccccccccc
Confidence 999999987776554 13899999999999999999999977657999999999999999853
Q ss_pred --------------Cccccccccee----eccCCCe--ee--------CCCc----ccceeeeeccchhhhhcCChHHHH
Q 006659 227 --------------GAVSILKFDNA----KGRNGGT--YA--------RPAS----VQRALSILEMEVEQINKGNYEHYM 274 (636)
Q Consensus 227 --------------~~~~~~~~~~~----~~~~g~~--~~--------~~~~----~~~~i~~~~~~~~~~~~~~y~~~m 274 (636)
+|+..|+.+++ .++||++ .. .+|. ..+.++.++|++...+|++|+|||
T Consensus 233 ~~~~~~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~hfM 312 (670)
T PTZ00394 233 YDLTDLSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGALRFYNAAERQRSIVKREVQHLDAKPEGLSKGNYPHFM 312 (670)
T ss_pred ccccccCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCEEEEEeCCCCcccccccceEEEeCCHhHhhcCCCchHH
Confidence 34555666655 7899998 11 1232 457889999999999999999999
Q ss_pred HHHHHhcHHHHHHHhhccccccCCcccccccccch-HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 275 QKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGL-KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 275 ~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l-~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
+|||+|||+++++++..+.+... ..+..+.+ .++++.++++++|+|+|||+|+++|..+++++.++.++++.+..
T Consensus 313 lkEI~EQP~~l~~~l~~~~~~~~----~~~~l~~~~~~~~~~l~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~v~~ 388 (670)
T PTZ00394 313 LKEIYEQPESVISSMHGRIDFSS----GTVQLSGFTQQSIRAILTSRRILFIACGTSLNSCLAVRPLFEELVPLPISVEN 388 (670)
T ss_pred HHHHHhhHHHHHHHHHhhhhhcc----CcccchhhHHHHHHHHhCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999876443111 11222333 34556788999999999999999999999999999999999999
Q ss_pred ccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHH
Q 006659 354 ASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTS 433 (636)
Q Consensus 354 ~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~ 433 (636)
++++.+.....+++|++|+||+||+|++++++++.||++|+++|+||++.+|+|++.||++|.+++++|..++.|++|++
T Consensus 389 asef~~~~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E~~va~Tks~ts 468 (670)
T PTZ00394 389 ASDFLDRRPRIQRDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTS 468 (670)
T ss_pred cchhhhhccCCCCCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEecccccccccccHhHHH
Confidence 99997776677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHH
Q 006659 434 QIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKV 512 (636)
Q Consensus 434 ~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl 512 (636)
++++++++++.++..++...++++++.+.+..+|+.++++++. +++++++|+.+.+.++++++|+|++||+|+|+||||
T Consensus 469 ql~~l~llal~la~~~~~~~~~~~~l~~~l~~lp~~i~~~l~~~~~~~~~~a~~l~~~~~~~~lGrG~~y~~A~EgALKl 548 (670)
T PTZ00394 469 QVVVLTLVALLLSSDSVRLQERRNEIIRGLAELPAAISECLKITHDPVKALAARLKESSSILVLGRGYDLATAMEAALKV 548 (670)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 9999999999988765433445678889999999999999986 788999999999999999999999999999999999
Q ss_pred HHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEc
Q 006659 513 KEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEV 592 (636)
Q Consensus 513 ~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~ 592 (636)
+|++|+||++|+++||+|||+++++++++||+|.++++.++++.+++++++++|+++++|+++++.... ...+..+.+
T Consensus 549 kE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~~~~evk~~g~~vi~I~~~~~~~~~--~~~~~~i~v 626 (670)
T PTZ00394 549 KELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAVQQVKARGGAVVVFATEVDAELK--AAASEIVLV 626 (670)
T ss_pred HHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHHHHHHHHHcCCeEEEEECCCcchhc--ccCCcEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999987542211 123467899
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659 593 PQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636 (636)
Q Consensus 593 p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~ 636 (636)
|.+.+++.|+++++|+|+|||++|..+|+|||+||||+||||||
T Consensus 627 p~~~~~l~pll~~iplQllAy~~A~~rG~dpD~PRnLaKsVtv~ 670 (670)
T PTZ00394 627 PKTVDCLQCVVNVIPFQLLAYYMALLRGNNVDCPRNLAKSVTVQ 670 (670)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEeC
Confidence 98889999999999999999999999999999999999999997
No 3
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=100.00 E-value=5.1e-106 Score=907.60 Aligned_cols=624 Identities=84% Similarity=1.246 Sum_probs=524.3
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++........++...++.+|.+||||||||+||++.++.+ .+...+.++|+.|.+++|.+++|
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~----------~~~~~~~~~k~~G~~~~l~~~~~ 70 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPS----------LESSSPLVFREEGKIESLVRSVY 70 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCc----------ccccceEEEEcCCCHHHHHHHHh
Confidence 99999999642110122577899999999999999999999986420 00012789999999999987777
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
....+..++.+..++|+++|||+||+|+|.++..|+|||.....+++++||||+|+|+.+||++|...|+.|.++||||+
T Consensus 71 ~~~~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEv 150 (680)
T PLN02981 71 EEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEV 150 (680)
T ss_pred hhccccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHH
Confidence 42111222212246799999999999999888899999987535789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc--------------
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-------------- 226 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-------------- 226 (636)
|++++.+.+..|+...+ ..++.+++++++++|+|+|||++++...+++||++||+|||++|+++
T Consensus 151 i~~li~~~~~~~~~~~~--~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~~PL~iG~~~~~~~~~~~~~~~~~ 228 (680)
T PLN02981 151 IPKLAKFVFDKLNEEEG--DVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRGSPLLLGVKELPEEKNSSAVFTSE 228 (680)
T ss_pred HHHHHHHHHHhcccccC--CCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecCCceEEEecCcccccccccccccc
Confidence 99999887766541000 02799999999999999999999998767999999999999999983
Q ss_pred ---------------Cccccccccee----eccCCCe--eeC--------CC------------c-ccceeeeeccchhh
Q 006659 227 ---------------GAVSILKFDNA----KGRNGGT--YAR--------PA------------S-VQRALSILEMEVEQ 264 (636)
Q Consensus 227 ---------------~~~~~~~~~~~----~~~~g~~--~~~--------~~------------~-~~~~i~~~~~~~~~ 264 (636)
+|+..|+..++ .++||++ +.. +| . ..+.++.++|+...
T Consensus 229 ~~~~~~~~~~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (680)
T PLN02981 229 GFLTKNRDKPKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVGIYKFENEKGRGGGGLSRPASVERALSTLEMEVEQ 308 (680)
T ss_pred cccccccccCCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeEEEEeCCCCccccccccccccccccceEEeeCCHHH
Confidence 23344444333 7999999 221 22 2 35788899999999
Q ss_pred hhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHh
Q 006659 265 INKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEEL 344 (636)
Q Consensus 265 ~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~ 344 (636)
.+|++|+|||++||+|||+.+++++..++.............+.+.++++.+.++++|+|+|||+|+++|..+++++.++
T Consensus 309 ~~k~~y~~~m~kEI~EQP~~l~~~l~~r~~~~~~~~~~~~~l~~l~~~~~~l~~~~~I~~~G~GsS~~aa~~a~~~l~kl 388 (680)
T PLN02981 309 IMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGKAKRVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEEL 388 (680)
T ss_pred hccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654211000000223355777788889999999999999999999999999999
Q ss_pred cCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCccc
Q 006659 345 SDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIG 424 (636)
Q Consensus 345 ~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~ 424 (636)
.++++.+..++++.+......++|++|++|+||+|++++++++.||++|+++|+||++.+|+|++.||++|.+++++|.+
T Consensus 389 ~~i~v~~~~~sef~~~~~~~~~~~lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~~g~E~~ 468 (680)
T PLN02981 389 SGVPVTMELASDLLDRQGPIYREDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHINAGAEIG 468 (680)
T ss_pred hCCCEEEecchHHHhccccCCCCCeEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeEEecCccccc
Confidence 99999999999987665556789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHH
Q 006659 425 VASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYAT 504 (636)
Q Consensus 425 ~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~ 504 (636)
++.|++|+++++++++|++.++.......+.+++++++|..+|+.++++++..++++++|+.+.+.++++++|+|++||+
T Consensus 469 ~a~Tksfts~~~~l~llal~l~~~~~~~~~~~~~~~~~l~~lp~~l~~vl~~~~~~~~~a~~l~~~~~~~~lG~G~~yg~ 548 (680)
T PLN02981 469 VASTKAYTSQIVAMTMLALALGEDSISSRSRREAIIDGLFDLPNKVREVLKLDQEMKELAELLIDEQSLLVFGRGYNYAT 548 (680)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhhCCCcEEEEeCCCCHHH
Confidence 99999999999999999999886443333444678889999999999999866789999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCC
Q 006659 505 ALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPG 584 (636)
Q Consensus 505 A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~ 584 (636)
|+|+||||+|++|+||++++++||+|||+++++++++||+|.++++.++++.+++++++++|+++++|+++++.......
T Consensus 549 A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~l~~~~~~~~~~~~~~~el~~~g~~vi~I~~~~~~~~~~~~ 628 (680)
T PLN02981 549 ALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIATRDACFSKQQSVIQQLRARKGRLIVICSKGDASSVCPS 628 (680)
T ss_pred HHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEEEEcCCchHHHHHHHHHHHHHcCCEEEEEEcCCcchhcccc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999987542110001
Q ss_pred CcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659 585 GSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636 (636)
Q Consensus 585 ~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~ 636 (636)
..+..+.+|.+++.+.|+++++|+|+|||++|..+|+|||+||||+||||||
T Consensus 629 ~~~~~i~~p~~~~~l~pll~iiplQllAy~~A~~~G~dpD~PRnLaK~vtve 680 (680)
T PLN02981 629 GGCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGHNVDQPRNLAKSVTTQ 680 (680)
T ss_pred CCCeEEEEeccchHHhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEeC
Confidence 2346788998888999999999999999999999999999999999999998
No 4
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.5e-104 Score=802.67 Aligned_cols=608 Identities=58% Similarity=0.938 Sum_probs=551.3
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+.++-..+...++.+.++++|++|++||+||+|++...... ....++|++|+++.|.
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~-------------~s~~~~k~~GkVkaL~---- 63 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDEL-------------ESLLIYKQTGKVSSLK---- 63 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcc-------------cchhhhcccCceeehh----
Confidence 99999999988777778899999999999999999999999986531 2577899999998876
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
+...+...+++.++..+++|+|+||||+|.++..|+||+.....+.|++||||.|.||++||+.|..+|+.|.++||||.
T Consensus 64 e~i~~q~~~l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEc 143 (670)
T KOG1268|consen 64 EEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTEC 143 (670)
T ss_pred HHHhhcCcccceeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHH
Confidence 33333367777888999999999999999999999999997767789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc------------Cc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD------------GA 228 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~------------~~ 228 (636)
|+.|+.+.+++.+. ..++.+..+.++++++|+|++++.....++.+.+.|+++||.+|+++ |.
T Consensus 144 iaKL~~~~~D~~~~-----~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~ 218 (670)
T KOG1268|consen 144 IAKLYKHIYDTSPE-----DLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYG 218 (670)
T ss_pred HHHHHHHHHhhCCC-----cccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccCCcceeeecccccccccceeeecc
Confidence 99999998887541 36899999999999999999999999999999999999999999997 11
Q ss_pred c-------------cc--------------------ccccee----eccCCCee------------eC-CCcccceeeee
Q 006659 229 V-------------SI--------------------LKFDNA----KGRNGGTY------------AR-PASVQRALSIL 258 (636)
Q Consensus 229 ~-------------~~--------------------~~~~~~----~~~~g~~~------------~~-~~~~~~~i~~~ 258 (636)
+ +. +.+.++ .++++++. .. .|...|.++.+
T Consensus 219 ~~~~~~~~~~~~~d~~~~~~~~~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~lsihr~~~~~~~~~R~i~tl 298 (670)
T KOG1268|consen 219 DTQEVSYLKLNKTDTKASLHFLAGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGELTIHRGKRTAGPSTRSIQTL 298 (670)
T ss_pred ccceecccccCCcccccccccccCCceEEEEecCcchhheecceeEEeccCcEEEEecCceEEEeeccccCCcchHHHHH
Confidence 0 00 111111 34555551 11 22357899999
Q ss_pred ccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHH
Q 006659 259 EMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAAR 338 (636)
Q Consensus 259 ~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~ 338 (636)
+.+..+++|+.|++||.|||+|||+++.++++.+..... +.+.+..++.-...++.++|++++|||+||++|.+.+
T Consensus 299 emEl~qImKG~yd~yMqKEI~EQpeS~~ntMRGRv~~~~----~~V~LGGlk~~l~~irr~rRli~iacgtSyhs~~A~R 374 (670)
T KOG1268|consen 299 EMELQQIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPL----NKVVLGGLKDYLPEIRRCRRLIMVACGTSYHSALATR 374 (670)
T ss_pred HHHHHHHcCCchHhhhhhHHhhCchHHHHhccceecccc----ceeeecCCcchhhhhhhccccEEEEecchHHHHHHHH
Confidence 999999999999999999999999999999998877654 5567788888899999999999999999999999999
Q ss_pred HHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcC
Q 006659 339 PILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHIN 418 (636)
Q Consensus 339 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~ 418 (636)
.+++.+..+|+.++-+++|.....++-.+|+++++||||+|.+++-|++.++++|+-+|+|||..+|.+.+..++-+.++
T Consensus 375 ~ilEEL~eiPV~vElAsDflDR~~pifRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiN 454 (670)
T KOG1268|consen 375 PILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGVHIN 454 (670)
T ss_pred HHHHHHhcCCeeeehhhhhHhcCCCceeccEEEEEecCCchHHHHHHHHHHHhcCceEEEeecccCcccccccccceecc
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeC
Q 006659 419 AGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGR 498 (636)
Q Consensus 419 ~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~ 498 (636)
+|||.++++||+||+|+..+.++++.++.++.+.+++..++++.|..+|+.++++++.++.++++|.++.+.+.+.++|+
T Consensus 455 aGpEigvAsTKaYTSQ~i~lvm~aL~~s~d~is~~~RR~eIi~gL~~l~~~ikevL~l~~~i~~la~~l~~~~slLi~GR 534 (670)
T KOG1268|consen 455 AGPEIGVASTKAYTSQYIALVMFALWMSEDRVSKQERRKEIIDGLKDLPSQIKEVLELDPKIKDLAKELKDHKSLLIMGR 534 (670)
T ss_pred CCCccceeechHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccceEEEecc
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCC
Q 006659 499 GYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDA 578 (636)
Q Consensus 499 G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~ 578 (636)
|.+|++|+|||||++|++++|+++.-.+|.+|||++++|++.|++++.+.|..+.+.+..++++.+|++++|+|.++++.
T Consensus 535 Gy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~na~qQv~aRkG~pIiic~~~~~ 614 (670)
T KOG1268|consen 535 GYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAIQQVTARKGRPIIICDKGDK 614 (670)
T ss_pred cccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHHHHHHHHHhcCCCeEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659 579 ASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636 (636)
Q Consensus 579 ~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~ 636 (636)
... ......+.+|.+-+.+..++.++|+|+|+|++|+.||+|.|.||||+|+||||
T Consensus 615 ~~~--~~~~~~~~vP~tvDClQgil~viPlQLlsyhlav~rg~~vD~PRnlAkSvtve 670 (670)
T KOG1268|consen 615 EEQ--KAGNKTLEVPQTVDCLQGILNVIPLQLLSYHLAVLRGINVDFPRNLAKSVTVE 670 (670)
T ss_pred hhh--cccceEEeCCchhhhhhhhhhhhhHHHHHHHHHHHcCCCCCCccccccccccC
Confidence 432 12345699999888999999999999999999999999999999999999997
No 5
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=2e-99 Score=855.15 Aligned_cols=592 Identities=36% Similarity=0.575 Sum_probs=509.5
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEee--cccchhhhhH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQ--EGNIESLVKS 78 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~g~~~~l~~~ 78 (636)
||||||+++ ..++...++.+|.+||||||||+||++.+++ +.+.++|. .|.+++
T Consensus 24 MCGI~G~~~------~~~~~~~~~~~l~~L~hRG~ds~Gia~~~~~--------------~~~~~~k~~g~g~v~~---- 79 (640)
T PTZ00295 24 CCGIVGYLG------NEDASKILLEGIEILQNRGYDSCGISTISSG--------------GELKTTKYASDGTTSD---- 79 (640)
T ss_pred CCeEEEEEc------CcchHHHHHHHHHHHHhcCCCeeEEEEEeCC--------------CcEEEEEeCCCCchHH----
Confidence 999999995 3356788999999999999999999998643 25888884 455553
Q ss_pred HHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHh
Q 006659 79 VYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDT 158 (636)
Q Consensus 79 ~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDs 158 (636)
+|+++.+. ++ ....+|+++|||+||||+|..+..|+|||... .++++++|||+|+|+.+||++|...|+.|.++|||
T Consensus 80 ~~~~~~~~-~~-~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~-~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDs 156 (640)
T PTZ00295 80 SIEILKEK-LL-DSHKNSTIGIAHTRWATHGGKTDENAHPHCDY-KKRIALVHNGTIENYVELKSELIAKGIKFRSETDS 156 (640)
T ss_pred HHHHHHHH-hh-cCCCCCcEEEEEeccccCCCCCcCCCCCCCCC-CCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChH
Confidence 55654321 21 11457899999999999998888999999865 57899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccc
Q 006659 159 EVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILK 233 (636)
Q Consensus 159 E~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~ 233 (636)
|+|++++.+++. ++ .++.+++++++++|+|+|||++++..++++|+++||+||||+|..+ +|+..++
T Consensus 157 Evi~~li~~~~~-~g-------~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~~PL~~g~~~~~~~~aSE~~al 228 (640)
T PTZ00295 157 EVIANLIGLELD-QG-------EDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNGSPLLVGIGDDSIYVASEPSAF 228 (640)
T ss_pred HHHHHHHHHHHh-cC-------CCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECCCceEEEEcCceEEEEechHHH
Confidence 999999987663 33 4799999999999999999999997646899999999999999987 5555566
Q ss_pred ccee----eccCCCe--eeCCCc----ccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhc--cccccCCccc
Q 006659 234 FDNA----KGRNGGT--YARPAS----VQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRG--RLIRGGSCKA 301 (636)
Q Consensus 234 ~~~~----~~~~g~~--~~~~~~----~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~--~~~~~~~~~~ 301 (636)
...+ .++||++ +..+|. ..+.++.+.|+....+|++|+|||+|||+|||+++++++.. .+....
T Consensus 229 ~~~~~~~~~l~pGei~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~m~kEI~EqP~~l~~~l~~~~~~~~~~---- 304 (640)
T PTZ00295 229 AKYTNEYISLKDGEIAELSLENVNDLYTQRRVEKIPEEVIEKSPEPYPHWTLKEIFEQPIALSRALNNGGRLSGYN---- 304 (640)
T ss_pred HhhCcEEEEeCCCeEEEEECCeEEEEecCCceEEecCChhhhcCCCchHHHHHHHHHHHHHHHHHhhcccceeccC----
Confidence 5443 7999999 334443 35788899999999999999999999999999999999842 221111
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCC-cEEEeeccchhcccCCCCCCcEEEEEcCCCCCH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDL-PVTMEIASDLVDRQAPIYREDTAVFVSQSGETA 380 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~ 380 (636)
..+..+.++++++.+.++++|+|+|||+|+++|..++++|.+++++ .+.+..++++.+.. ...++|++|++|+||+|+
T Consensus 305 ~~~~~~~~~~~~~~l~~~~~I~i~g~GsS~~aa~~~~~~l~~~~~~~~v~~~~~s~~~~~~-~~~~~~lvI~ISqSGeT~ 383 (640)
T PTZ00295 305 NRVKLGGLDQYLEELLNIKNLILVGCGTSYYAALFAASIMQKLKCFNTVQVIDASELTLYR-LPDEDAGVIFISQSGETL 383 (640)
T ss_pred CccchhhhHHHHHHHhcCCEEEEEEeehHHHHHHHHHHHHHHhCCCCceEEechHHhhhhc-cCCCCCEEEEEeCCCCcH
Confidence 1233344667778889999999999999999999999999999887 47777777776543 346899999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC--CcHHHHHH
Q 006659 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI--STQARREA 458 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~--~~~~~~~~ 458 (636)
+++++++.||++|+++|+||++++|+|++.||++|.+.+++|.+++.|++|++++++++++++.++...+ ...+++++
T Consensus 384 d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ag~E~~v~~Tk~~ts~l~~l~lla~~~~~~~~~~~~~~~~~~ 463 (640)
T PTZ00295 384 DVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLNAGREVAVASTKAFTSQVTVLSLIALWFAQNKEYSCSNYKCSS 463 (640)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeCCcCcccccccccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988877654 34567888
Q ss_pred HHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 006659 459 IIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD 537 (636)
Q Consensus 459 ~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~ 537 (636)
+.++|..+|+.++++++. +++++++++.+.+.++++++|+|.+|++|+|++|||+|++++||++++.+||+|||+++++
T Consensus 464 ~~~~l~~lp~~~~~~l~~~~~~~~~~a~~l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~ 543 (640)
T PTZ00295 464 LINSLHRLPTYIGMTLKSCEEQCKRIAEKLKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALID 543 (640)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhc
Confidence 999999999999999984 7889999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHH
Q 006659 538 --ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHL 615 (636)
Q Consensus 538 --~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~l 615 (636)
+++++|+|.++|...+++.+++++++++|+++++|++.+.. .. ...+..+.+|.. +.++|+++++|+|+|+|++
T Consensus 544 ~~~~~~VI~i~~~~~~~~~~~~~~~~lk~rga~vi~It~~~~~-l~--~~ad~~i~ip~~-~~l~p~~~~ip~Qllay~l 619 (640)
T PTZ00295 544 KEKNTPVILIILDDEHKELMINAAEQVKARGAYIIVITDDEDL-VK--DFADEIILIPSN-GPLTALLAVIPLQLLAYEI 619 (640)
T ss_pred CCCCCeEEEEEcCCccHHHHHHHHHHHHHcCCEEEEEecCCcc-cc--ccCCeEEEeCCc-ccchHHHHHHHHHHHHHHH
Confidence 88999999998888899999999999999999999986532 11 124567888874 7899999999999999999
Q ss_pred HHHcCCCCCCCCCCcceeecC
Q 006659 616 TVLRGYNVDQPRNLAKSVTTQ 636 (636)
Q Consensus 616 A~~~G~~pd~pr~l~k~v~~~ 636 (636)
|..+|+|||+||||+|||||.
T Consensus 620 a~~~G~dpD~pr~LaK~vtv~ 640 (640)
T PTZ00295 620 AILRGINPDKPRGLAKTVTVD 640 (640)
T ss_pred HHHcCCCCCCCCCCCccEEeC
Confidence 999999999999999999984
No 6
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=1.3e-98 Score=847.39 Aligned_cols=583 Identities=42% Similarity=0.692 Sum_probs=511.4
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++. .+....+..||.+|+|||||++|+++.+++ ++.++|+.|.++++ +
T Consensus 1 MCGI~g~~~~------~~~~~~~~~~l~~l~hRG~d~~Gi~~~~~~---------------~~~~~k~~g~~~~~----~ 55 (604)
T PRK00331 1 MCGIVGYVGQ------RNAAEILLEGLKRLEYRGYDSAGIAVLDDG---------------GLEVRKAVGKVANL----E 55 (604)
T ss_pred CcEEEEEEcC------ccHHHHHHHHHHHHhccCcCcceEEEEeCC---------------EEEEEECCcCHHHH----H
Confidence 9999999953 234577889999999999999999998754 79999999998754 3
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
+.. ++ ....++++|||+||+|+|.++..|+|||... .++++++|||+|+|+.+||++|...|+.|.++||||+
T Consensus 56 ~~~-----~~-~~~~g~~~igH~R~at~g~~~~~n~qP~~~~-~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEv 128 (604)
T PRK00331 56 AKL-----EE-EPLPGTTGIGHTRWATHGKPTERNAHPHTDC-SGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEV 128 (604)
T ss_pred hhh-----cc-ccCCCcEEEEEEecCCCCCCccccCCccccC-CCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHH
Confidence 321 11 2457899999999999998878999999975 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFD 235 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~ 235 (636)
|+++|.+.+.. | .++.+++++++++|+|.|||+++|.+.+++||++||+||||+|..+ +|+..+++.
T Consensus 129 i~~l~~~~~~~-g-------~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~PL~~g~~~~~~~~aSE~~al~~ 200 (604)
T PRK00331 129 IAHLIEEELKE-G-------GDLLEAVRKALKRLEGAYALAVIDKDEPDTIVAARNGSPLVIGLGEGENFLASDALALLP 200 (604)
T ss_pred HHHHHHHHHhh-C-------CCHHHHHHHHHHhccCeeEEEEEecCCCCEEEEEECCCceEEEEcCCeEEEEECHHHHHH
Confidence 99999976542 2 4799999999999999999999998744899999999999999987 556666655
Q ss_pred ee----eccCCCe--eeCC--------Cc-ccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcc
Q 006659 236 NA----KGRNGGT--YARP--------AS-VQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCK 300 (636)
Q Consensus 236 ~~----~~~~g~~--~~~~--------~~-~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~ 300 (636)
.. .++||++ +..+ |. ..+++++.++....++|++|+++|++||.|||+.+++++......
T Consensus 201 ~~~~~~~l~pg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~eI~eqP~~l~~~~~~~~~~----- 275 (604)
T PRK00331 201 YTRRVIYLEDGEIAVLTRDGVEIFDFDGNPVEREVYTVDWDASAAEKGGYRHFMLKEIYEQPEAIRDTLEGRLDE----- 275 (604)
T ss_pred hcCEEEEECCCeEEEEECCeEEEEeCCCCcccCceEEEeCCHHHhccCCCchHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 43 7999999 2222 22 346778899999999999999999999999999999998754321
Q ss_pred cccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCH
Q 006659 301 AKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETA 380 (636)
Q Consensus 301 ~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~ 380 (636)
.+.++..++.+.++++|+|+|+|+|++++..+++++.++.++++.+..++++.+.....+++|++|++|+||+|+
T Consensus 276 -----~~~~~~~~~~l~~a~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~ 350 (604)
T PRK00331 276 -----LGEGELADEDLKKIDRIYIVACGTSYHAGLVAKYLIESLAGIPVEVEIASEFRYRDPVLSPKTLVIAISQSGETA 350 (604)
T ss_pred -----ccchhhhHHHHhcCCEEEEEEeecHHHHHHHHHHHHHHHcCCCEEEEehhhhhccCCCCCCCeEEEEEcCCCCCH
Confidence 123455577788999999999999999999999999999899988888888866556678999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHH
Q 006659 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS-TQARREAI 459 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~ 459 (636)
+++++++.||++|+++|+||++++|||++.||++|.+.+++|.+++.|++|+++++++++|+..++...+. +.++++++
T Consensus 351 e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~~~~~~g~~~~~~~~~~ 430 (604)
T PRK00331 351 DTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKARGTLSAEEEADL 430 (604)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999889988889999999999999999988876553 45677889
Q ss_pred HHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC
Q 006659 460 IDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDEN 539 (636)
Q Consensus 460 ~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~ 539 (636)
.++|+.+|+.++++++.+++++++++.+.+.+.++++|+|++||+|+|++|||+|++|+||++++++||+|||+++++++
T Consensus 431 ~~~l~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~ 510 (604)
T PRK00331 431 VHELRELPALIEQVLDLKEQIEELAEDFADARNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEG 510 (604)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCC
Confidence 99999999999999977788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHc
Q 006659 540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLR 619 (636)
Q Consensus 540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~ 619 (636)
+++|+|.+++...+++.+++++++++|+++++|+.++.. .. ...+..+.+|..++.++|+++++|+|+++|++|+.+
T Consensus 511 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~~ip~Qlla~~~A~~~ 587 (604)
T PRK00331 511 MPVVAIAPNDELYEKTKSNIQEVKARGARVIVIADEGDE-VA--EEADDVIEVPEVHELLAPLLYVVPLQLLAYHVALAR 587 (604)
T ss_pred ceEEEEEcCchHHHHHHHHHHHHHhCCCEEEEEEcCCcc-cc--ccCCceEECCCCccchhHHHHHHHHHHHHHHHHHHc
Confidence 999999998888888889999999999999999875431 10 123567889988889999999999999999999999
Q ss_pred CCCCCCCCCCcceeecC
Q 006659 620 GYNVDQPRNLAKSVTTQ 636 (636)
Q Consensus 620 G~~pd~pr~l~k~v~~~ 636 (636)
|+|||.||||+||||||
T Consensus 588 G~~pd~pr~l~K~v~~~ 604 (604)
T PRK00331 588 GTDVDKPRNLAKSVTVE 604 (604)
T ss_pred CCCCCCCCCCCCeEEeC
Confidence 99999999999999997
No 7
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=100.00 E-value=1.7e-97 Score=838.77 Aligned_cols=586 Identities=41% Similarity=0.687 Sum_probs=507.8
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE 81 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~ 81 (636)
|||+|+++. ......+..||.+|+|||||++|+++.+++ .+.++|+.|.++++ ++
T Consensus 1 CGI~g~~~~------~~~~~~~~~~l~~l~hRG~ds~Gi~~~~~~---------------~~~~~k~~g~~~~~----~~ 55 (607)
T TIGR01135 1 CGIVGYIGQ------RDAVPILLEGLKRLEYRGYDSAGIAVVDEG---------------KLFVRKAVGKVQEL----AN 55 (607)
T ss_pred CeEEEEECC------ccHHHHHHHHHHHHhccCcccceEEEEeCC---------------EEEEEECCcCHHHH----Hh
Confidence 999999952 234477889999999999999999998653 68999999998764 34
Q ss_pred HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659 82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161 (636)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i 161 (636)
... + ....++++|||+||+|+|..+..|+|||... .++++++|||+|+|+.+||++|...|+.|.++||||+|
T Consensus 56 ~~~-----~-~~~~~~~~igH~R~at~g~~~~~n~qP~~~~-~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi 128 (607)
T TIGR01135 56 KLG-----E-KPLPGGVGIGHTRWATHGKPTEENAHPHTDE-GGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVI 128 (607)
T ss_pred hhh-----c-ccCCccEEEEEeeccCCCCCCccCCCCcCcC-CCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHH
Confidence 321 1 1356899999999999998778899999876 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccce
Q 006659 162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFDN 236 (636)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~~ 236 (636)
+++|.+.+.. + .++.+++++++++|+|+|||+++|...+++||++||+||||+|.++ +||..+++..
T Consensus 129 ~~l~~~~~~~-~-------~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~~PL~~~~~~~~~~~aSE~~al~~~ 200 (607)
T TIGR01135 129 AHLIEEYLRE-G-------GDLLEAVQKALKQLRGAYALAVLHADHPETLVAARSGSPLIVGLGDGENFVASDVTALLPV 200 (607)
T ss_pred HHHHHHHHhc-C-------CCHHHHHHHHHHHhcCceEEEEEecCCCCEEEEEECCCceEEEECCCeEEEEEChHHHHhh
Confidence 9999976532 1 4799999999999999999999997644679999999999999987 5666666654
Q ss_pred e----eccCCCe--eeCCC--------c-ccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCccc
Q 006659 237 A----KGRNGGT--YARPA--------S-VQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKA 301 (636)
Q Consensus 237 ~----~~~~g~~--~~~~~--------~-~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~ 301 (636)
+ .++||++ +..+| . ..+.+++.+|.....+|++|+++|++||.|||+.+++++........
T Consensus 201 ~~~~~~l~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~eI~eqP~~l~~~l~~~~~~~~---- 276 (607)
T TIGR01135 201 TRRVIYLEDGDIAILTRDGVRIYNFEGAPVSREVRTIDWDLDAAEKGGYRHFMLKEIYEQPRALRDTLEGRISEAG---- 276 (607)
T ss_pred CCEEEEeCCCeEEEEECCeeEEEeCCCCccccceEEEeCCHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----
Confidence 4 7999999 22222 2 35678899999999999999999999999999999999875332111
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD 381 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e 381 (636)
..+ +.+. ..+.+.++++|+|+|+|+|++++..+++++.++.++++.+..++++.+.....+++|++|+||+||+|++
T Consensus 277 ~~~--~~~~-~~~~l~~~~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e 353 (607)
T TIGR01135 277 VVL--EELG-AEELLKNVDRIQIVACGTSYHAGLVAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETAD 353 (607)
T ss_pred cch--hhcc-chhHhccCCEEEEEEeechHHHHHHHHHHHHHhcCCCEEEecHHHHhhcCCCCCCCCEEEEEeCCCCCHH
Confidence 001 1111 1245789999999999999999999999999998999988888888665556789999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHH
Q 006659 382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS-TQARREAII 460 (636)
Q Consensus 382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~ 460 (636)
++++++.||++|+++|+||++++|||+++||++|.+++++|.+++.|++|+++++++++|+..++...+. ..++++++.
T Consensus 354 ~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~l~~~~g~~~~~~~~~~~ 433 (607)
T TIGR01135 354 TLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKARGTLSAEEEAELV 433 (607)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999988888889999999999999999988876553 556678888
Q ss_pred HHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCC
Q 006659 461 DGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENL 540 (636)
Q Consensus 461 ~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~ 540 (636)
+++..+|+.++++++.+++++++++.+.+.++++++|+|++||+|+|+||||+|++|+||++++++||+|||++++++++
T Consensus 434 ~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~ 513 (607)
T TIGR01135 434 DGLRRLPALVEQVLKLEESIAELAERYADKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGL 513 (607)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCC
Confidence 99999999999999876889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 006659 541 PILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRG 620 (636)
Q Consensus 541 ~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G 620 (636)
++|+|.++|+..+++.+++++++++|+++++|++++..... ...+..+.+|..++.++|+++++|+|+|+|++|+.+|
T Consensus 514 ~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~~~~~--~~~~~~i~~p~~~~~l~pl~~~~p~Qlla~~~A~~~G 591 (607)
T TIGR01135 514 PVVAIAPKDSLFEKTKSNVEEVKARGARVIVFADEDDEFLE--SVADDVIKLPEVEELLAPIVYTVPLQLLAYHIALAKG 591 (607)
T ss_pred CEEEEEeCchHHHHHHHHHHHHHHcCCeEEEEECCCccccc--ccCCcEEECCCCCccchHHHHHHHHHHHHHHHHHHcC
Confidence 99999998888899999999999999999999987542110 1234678899888899999999999999999999999
Q ss_pred CCCCCCCCCcceeecC
Q 006659 621 YNVDQPRNLAKSVTTQ 636 (636)
Q Consensus 621 ~~pd~pr~l~k~v~~~ 636 (636)
+|||.||||+||||||
T Consensus 592 ~dpd~pr~L~K~v~~e 607 (607)
T TIGR01135 592 TDVDKPRNLAKSVTVE 607 (607)
T ss_pred CCCCCCCCCCCeEeeC
Confidence 9999999999999998
No 8
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=100.00 E-value=1.6e-51 Score=431.19 Aligned_cols=326 Identities=21% Similarity=0.306 Sum_probs=279.7
Q ss_pred HHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHc--CCCeEEEEeechhHHHHHHHHHHHHHhcCCcE
Q 006659 272 HYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIR--RSRRIVFIGCGTSYNAALAARPILEELSDLPV 349 (636)
Q Consensus 272 ~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~--~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~ 349 (636)
..|+.++.++|..+++.+.... +.++++++.+. ++++|+|+|||+|+++|..+++++.++.++++
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~-------------~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v 74 (340)
T PRK11382 8 TVDFLVTENMVQEVEKVLSHDV-------------PLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQV 74 (340)
T ss_pred HHHHHHHhhchHHHHHHHHhhh-------------HHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCe
Confidence 4599999999999999986533 34677888776 49999999999999999999999999999888
Q ss_pred EEeeccchhcccC-CCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch
Q 006659 350 TMEIASDLVDRQA-PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST 428 (636)
Q Consensus 350 ~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t 428 (636)
.+..++++.+... .++++|++|+||+||+|++++++++.||++|+++|+||++++|||++.||++|.+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~------- 147 (340)
T PRK11382 75 YAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADC------- 147 (340)
T ss_pred EEeccHHHHhcCCcCCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCc-------
Confidence 8888888876544 46899999999999999999999999999999999999999999999999999998765
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHH-H
Q 006659 429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATA-L 506 (636)
Q Consensus 429 ~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A-~ 506 (636)
++..++..+.+++..+..... ..+.++++.+.++.+|+.++++++. .++.+++++.+...+.++++|+|++||+| .
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~~a~~~~~~~~~~~lG~G~~y~~A~~ 225 (340)
T PRK11382 148 -IWEIHLLLCYSVVLEMITRLA-PNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYK 225 (340)
T ss_pred -hHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCHHHHHH
Confidence 222223333333333332222 2345678889999999999888874 67788888888899999999999999998 8
Q ss_pred HHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCc
Q 006659 507 EGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGS 586 (636)
Q Consensus 507 e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~ 586 (636)
|++|||+|++|+||++++++||+|||++++++++++|+|.++++++++..+++++++++|+++++|+..+ .
T Consensus 226 E~alKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~~~~~~~~~~~~~~~~l~~~~~~v~~I~~~~---~------ 296 (340)
T PRK11382 226 EGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAE---I------ 296 (340)
T ss_pred HHHHHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEECCC---C------
Confidence 9999999999999999999999999999999999999999988889999999999999999999997532 1
Q ss_pred ceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCccee
Q 006659 587 CRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSV 633 (636)
Q Consensus 587 ~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v 633 (636)
.|.+++++.|+++++|+|+++|++|..||+|||+|||+.--|
T Consensus 297 -----~~~~~~~l~pl~~~ip~Qlla~~lA~~rG~d~d~pR~~~~~~ 338 (340)
T PRK11382 297 -----SQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLV 338 (340)
T ss_pred -----CCCcchhHhHHHHHHHHHHHHHHHHHHhCcCCCCCCCccccc
Confidence 134567899999999999999999999999999999998654
No 9
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.9e-49 Score=402.26 Aligned_cols=331 Identities=32% Similarity=0.494 Sum_probs=277.1
Q ss_pred HHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcC--CCeEEEEeechhHHHHHHHHHHHHHhcCCcE
Q 006659 272 HYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRR--SRRIVFIGCGTSYNAALAARPILEELSDLPV 349 (636)
Q Consensus 272 ~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~--~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~ 349 (636)
++|++||.+||..+.+.+.... +.+.++.+.++. .++|+++|||+|++++..+++++++..+..+
T Consensus 3 ~~m~~e~~~~p~~~~~~~~~~~-------------~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~ 69 (340)
T COG2222 3 TLMLREIEQQPAVVARLLEANR-------------AVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLV 69 (340)
T ss_pred chhHHHHHhhHHHHHHHHHhhh-------------hHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCcee
Confidence 4799999999999999876532 234555655554 4699999999999999999999998888889
Q ss_pred EEeeccchhcccCC-CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch
Q 006659 350 TMEIASDLVDRQAP-IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST 428 (636)
Q Consensus 350 ~~~~~~e~~~~~~~-~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t 428 (636)
....++++...... ..++.++|++|+||+|+|++.+++.||+.|+.+|+||+..+|||++.||+.|.+..++|.++..|
T Consensus 70 ~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T 149 (340)
T COG2222 70 AAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAAT 149 (340)
T ss_pred eeechhHHhccCccccCCCeEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCchHHHHHH
Confidence 99999999776654 56778999999999999999999999999999999999999999999999999999999888999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHH
Q 006659 429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEG 508 (636)
Q Consensus 429 ~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~ 508 (636)
++|+++++....+...+.... +....+..++....... ++..++++..+.+.+++|++|+|++||+|+|.
T Consensus 150 ~s~~~~~~a~l~~~a~~~~~~--------~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~lGsG~~~g~A~e~ 219 (340)
T COG2222 150 KSFTASLLALLALLAEYDGDA--------QLLAALPDLPLEAAKAL--EEDAQEFAEEYADEDRIYTLGSGPLYGAAYEA 219 (340)
T ss_pred HHHHHHHHHHHHHHhhhcccc--------hhhhhhhcchHHHHHHh--hHHHHHHHHHhcCCCEEEEECCcccHHHHHHH
Confidence 999998877665555443221 22223444444433333 45566789999999999999999999999999
Q ss_pred HHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcce
Q 006659 509 ALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCR 588 (636)
Q Consensus 509 alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~ 588 (636)
+||++|++|+|+++++..||+|||++++++++||++|.++|++++...+++++++++|++|++|+.++...
T Consensus 220 aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~~~~~ga~v~vi~a~~~~~--------- 290 (340)
T COG2222 220 ALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKVLVIDAKDAAL--------- 290 (340)
T ss_pred HHHHHHHccccceeeeccccccCcHHHcCCCceEEEEecCCcchhHHHHHHHHHHhcCCeEEEEcCccccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999876321
Q ss_pred EEEcCCCCcch-hhHHHHHHHHHHHHHHHHHcCCCCCCCCC--Ccceee
Q 006659 589 VIEVPQVEDCL-QPVINIVPLQLLAYHLTVLRGYNVDQPRN--LAKSVT 634 (636)
Q Consensus 589 ~~~~p~~~~~~-~~~~~~v~~q~la~~lA~~~G~~pd~pr~--l~k~v~ 634 (636)
.+..+...+++ .++++++++|++++++|..||+|||+||| +.|+|.
T Consensus 291 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~a~~rg~~pd~pr~~~~~kv~~ 339 (340)
T COG2222 291 DLIDQRVRHDLAPPLLSLVVAQRLAYALAVARGHNPDTPRYYGLVKVTR 339 (340)
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeee
Confidence 11222333444 45557789999999999999999999999 888875
No 10
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=100.00 E-value=1.7e-48 Score=412.12 Aligned_cols=337 Identities=20% Similarity=0.226 Sum_probs=264.1
Q ss_pred HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHH--cCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE
Q 006659 273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI--RRSRRIVFIGCGTSYNAALAARPILEELSDLPVT 350 (636)
Q Consensus 273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l--~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~ 350 (636)
+..+||.|||+.++++....... .+.++++++.+ +..++|+|+|||+|+++|..++++++++.++++.
T Consensus 4 ~t~~EI~eqP~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~ 73 (372)
T TIGR02815 4 HTAREIRQQPALWRRLLTIIQAL----------RPALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVS 73 (372)
T ss_pred hHHHHHHHChHHHHHHHHHHHHh----------HHHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEE
Confidence 68899999999998754321111 13455666654 4578999999999999999999999999999999
Q ss_pred EeeccchhcccCC-C--CCCcEEEEEcCCCCCHHHHHHHHHHHHc--CCeEEEEEcCCCCccccccC-----eeEEcCCC
Q 006659 351 MEIASDLVDRQAP-I--YREDTAVFVSQSGETADTLQALEYASEN--GALCVGITNTVGSAIARKTH-----CGVHINAG 420 (636)
Q Consensus 351 ~~~~~e~~~~~~~-~--~~~dlvI~iS~SG~t~e~i~al~~ak~~--g~~vi~IT~~~~s~La~~ad-----~~l~~~~~ 420 (636)
+..++++.+.... . ++++++|++||||+|+|++++++.||++ |+++|+||++.+|+|++.|| +.++++.+
T Consensus 74 ~~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag 153 (372)
T TIGR02815 74 AVPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALYRNAINRSNAFALLMPAE 153 (372)
T ss_pred EEeCcccccccccccCCCCCeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHhhcccCceeEEEccCC
Confidence 9999997543322 2 3579999999999999999999999998 89999999999999999999 88988887
Q ss_pred -CcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHh--cCCCeEEEEe
Q 006659 421 -AEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQL--IAEQSLLVFG 497 (636)
Q Consensus 421 -~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l--~~~~~~~~lG 497 (636)
+|.+++.|++|+++++++.++... ... ..+ . +..+++....+++..+ ..+.++.+ .+.++++++|
T Consensus 154 ~~e~gva~Tksft~~l~al~~l~~~---~~~-~~~----~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lG 221 (372)
T TIGR02815 154 SNDRSFAMTSSFSCMTLATLAVLGP---ETI-ESQ----T---EERFADAALCILESGQ-WDFSEGVLGYAPWERIVYLG 221 (372)
T ss_pred CccceeeeHHHHHHHHHHHHHHHcc---ccC-CHH----H---HHHHHHHHHHHHhhhH-HHHHHHHHhhcCCCeEEEEe
Confidence 789999999999988777666321 111 111 1 2334444444443322 33344443 5889999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccc--ccccccccccccccccccCCCCeEEEEeCCcc-hHHHHHHHHHHHhcC--CeEEEE
Q 006659 498 RGYNYATALEGALKVKEVALMH--SEGILAGEMKHGPLALVDENLPILVIATRDAC-FSKQQSVIQQLHARK--GRLIVM 572 (636)
Q Consensus 498 ~G~~~~~A~e~alKl~E~~~~~--a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~-~~~~~~~~~~~~~~g--~~v~vi 572 (636)
+|++||+|+|+||||+|+++.+ +.++..+||+|||++++++++++|+|.++|+. +....+.+++++++| +++++|
T Consensus 222 rG~~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~l~e~~~~g~~~~v~~I 301 (372)
T TIGR02815 222 SGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDPYTRQYDLDLLAELRRDNQAGRVVAI 301 (372)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHheeeccccccccChHHHhcCCCeEEEEEcCchhhhhhhHHHHHHHHhcCCCceEEEE
Confidence 9999999999999999999944 66667899999999999999999999987763 323357888998885 999999
Q ss_pred ecCCCCcCCCCCCcceEEEcCCC---CcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659 573 CSKGDAASIFPGGSCRVIEVPQV---EDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT 635 (636)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~ 635 (636)
+.++.... ..+..+.+|.. ++.+.++.+++|+|+|||++|..+|+|||.||+++-+.+|
T Consensus 302 ~~~~~~~~----~~~~~i~i~~~~~~~~~~~~~~~vip~QllA~~~A~~~G~dpD~P~~~~~~~~~ 363 (372)
T TIGR02815 302 SAESSDIV----AAGDHFILPPSRHFIDVELAFPYLIFAQTLAFEQSLALGNTPDNPCPTGEVNRV 363 (372)
T ss_pred EcCCcccc----cCCCEEEeCCCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCceeee
Confidence 87632111 12345777754 4577899999999999999999999999999999877665
No 11
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.5e-39 Score=344.84 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=176.0
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++ ..++...++.+|.+||||||||+||++.+++ .+.++|+.|.+++ +|
T Consensus 19 mCGI~G~~~------~~~~~~~~~~gL~~LqhRGqdsaGIa~~d~~---------------~i~~~K~~Glv~~----vf 73 (474)
T PRK06388 19 DCAVVGFKG------GINAYSPIITALRTLQHRGQESAGMAVFDGR---------------KIHLKKGMGLVTD----VF 73 (474)
T ss_pred CCeEEEEEC------CcchHHHHHHHHHHhhCcCcCcceEEEEcCC---------------EEEEEecCcchHH----Hh
Confidence 999999995 3356788999999999999999999999764 6899999998875 56
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++.. ..++|+++|||+||+|+|..+..|+|||... ..+++++||||+|+|+.+||++|...|+.|.++||||
T Consensus 74 ~~~~-------~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtE 146 (474)
T PRK06388 74 NPAT-------DPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTE 146 (474)
T ss_pred hhhh-------hcCCCcEEEeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHH
Confidence 5421 2467999999999999998888999999855 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI 231 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~ 231 (636)
+|++++.+.+.+ .++.+++++++++|+|+|||++++ .+.|+++||+ |||++|..+ +||..
T Consensus 147 Vi~~li~~~~~~---------~~~~eai~~~~~~l~G~ya~vi~~---~~~l~a~RDp~GiRPL~~G~~~~~~~~ASE~~ 214 (474)
T PRK06388 147 VMLAELSRNISK---------YGLKEGFERSMERLRGAYACALMI---NDRLYAIRDPNGIRPLVLGKNFDGYIIASESC 214 (474)
T ss_pred HHHHHHHHHHhc---------CCHHHHHHHHHHhccCceeEEEEE---CCEEEEEECCCCCCceEEEecCCEEEEEEChH
Confidence 999999876643 258999999999999999999987 5899999999 899999987 56666
Q ss_pred ccccee-----eccCCCe--eeCCCc
Q 006659 232 LKFDNA-----KGRNGGT--YARPAS 250 (636)
Q Consensus 232 ~~~~~~-----~~~~g~~--~~~~~~ 250 (636)
|+...+ .++||++ +..+|.
T Consensus 215 Al~~~~~~~i~~l~PGeiv~i~~~g~ 240 (474)
T PRK06388 215 AIDALSGTTIKNVEPGEVVEVFDNGY 240 (474)
T ss_pred HHHhccCcEEEEeCCCEEEEEECCce
Confidence 665433 7999999 344553
No 12
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.5e-38 Score=341.04 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=173.7
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++ ..++...++.+|.+||||||||+||++.+++ .+.++|+.|.+++ +|
T Consensus 11 mCGI~Gi~~------~~~~~~~~~~gL~~LqHRGqdsaGIa~~d~~---------------~i~~~K~~Glv~~----vf 65 (484)
T PRK07272 11 ECGVFGIWG------HPDAAQLTYFGLHSLQHRGQEGAGIVSNDNG---------------KLKGHRDLGLLSE----VF 65 (484)
T ss_pred cCeEEEEEC------CccHHHHHHHHHHHhcccCCccceEEEEeCC---------------eeEEEecCCcccc----hh
Confidence 999999995 3356788999999999999999999999764 7999999998875 55
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++.. .+ ..++|+++|||+||+|+|.++..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus 66 ~~~~--~l---~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE 140 (484)
T PRK07272 66 KDPA--DL---DKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTE 140 (484)
T ss_pred cchh--hH---hcCCCcEEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHH
Confidence 5321 11 2467999999999999998888999999874 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Cccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVS 230 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~ 230 (636)
+|++++.+... .++.+++++++++|+|+|||++++ .++|+++||| ||||+|..+ +||.
T Consensus 141 VI~~Li~~~~~----------~~~~eai~~~~~~l~G~ya~~i~~---~~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~ 207 (484)
T PRK07272 141 ILMHLIRRSHN----------PTFMGKLKEALNTVKGGFAYLLLT---EDKLIAALDPNGFRPLSIGKMKNGAYVVASET 207 (484)
T ss_pred HHHHHHHHHcC----------CCHHHHHHHHHHHccCceeEEEEE---CCEEEEEECCCCCCcEEEEEecCCEEEEEECH
Confidence 99999986431 379999999999999999999998 5799999997 999999863 5555
Q ss_pred cccc----cee-eccCCCe--eeCCCc
Q 006659 231 ILKF----DNA-KGRNGGT--YARPAS 250 (636)
Q Consensus 231 ~~~~----~~~-~~~~g~~--~~~~~~ 250 (636)
.|+. ++. .++||++ +..+|.
T Consensus 208 ~Al~~ig~~~ir~l~PGEiv~i~~~g~ 234 (484)
T PRK07272 208 CAFDVVGAEWVRDVQPGEIVIIDDEGI 234 (484)
T ss_pred HHHhccCCceEEEcCCCeEEEEECCce
Confidence 5652 222 7999999 344453
No 13
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=6.7e-38 Score=306.93 Aligned_cols=203 Identities=43% Similarity=0.757 Sum_probs=170.6
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE 81 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~ 81 (636)
|||||+++.. .....+..|+.+|||||||++|+++.++. .+.++|+.|.++++ ++
T Consensus 1 CGI~G~~~~~------~~~~~~~~~l~~l~hRG~d~~Gi~~~~~~---------------~~~~~k~~g~~~~~----~~ 55 (215)
T cd00714 1 CGIVGYIGKR------EAVDILLEGLKRLEYRGYDSAGIAVIGDG---------------SLEVVKAVGKVANL----EE 55 (215)
T ss_pred CEEEEEEcCc------cHHHHHHHHHHHHhccCcCcceEEEEeCC---------------EEEEEEcCccHHHH----HH
Confidence 9999999632 23477889999999999999999998653 68999999988753 34
Q ss_pred HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659 82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161 (636)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i 161 (636)
.... ...+++++|||+||+|.|..+..|+|||... .++++++|||+|+|+.+||++|...|+.+.+.||||++
T Consensus 56 ~~~~------~~~~~~~~igH~R~at~g~~~~~n~qPf~~~-~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi 128 (215)
T cd00714 56 KLAE------KPLSGHVGIGHTRWATHGEPTDVNAHPHRSC-DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVI 128 (215)
T ss_pred Hhhh------ccCCccEEEEEEEccCCCCCCccCCCCCCcC-CCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHH
Confidence 3211 1346889999999999998778899999976 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccce
Q 006659 162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFDN 236 (636)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~~ 236 (636)
+++|.+.+.. + .++++++++++++|+|+|||+++|...+++|+++||+||||+|..+ +||..++...
T Consensus 129 ~~l~~~~~~~-~-------~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD~~PL~~~~~~~~~~~aSE~~al~~~ 200 (215)
T cd00714 129 AHLIEYYYDG-G-------LDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNGSPLVIGIGDGENFVASDAPALLEH 200 (215)
T ss_pred HHHHHHHHhc-C-------CCHHHHHHHHHHHhccceEEEEEEeCCCCEEEEEECCCCcEEEEcCCeEEEEECHHHHHHh
Confidence 9999876532 1 4799999999999999999999998644699999999999999876 5666666543
Q ss_pred e----eccCCCe
Q 006659 237 A----KGRNGGT 244 (636)
Q Consensus 237 ~----~~~~g~~ 244 (636)
+ .++||++
T Consensus 201 ~~~~~~~~~~~~ 212 (215)
T cd00714 201 TRRVIYLEDGDI 212 (215)
T ss_pred cCEEEEECCCCE
Confidence 3 7888887
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.8e-38 Score=337.22 Aligned_cols=206 Identities=26% Similarity=0.375 Sum_probs=172.7
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++ ..+....++.+|.+||||||||+||++.+++ .+.++|+.|.+++ +|
T Consensus 11 mCGI~Gi~~------~~~~~~~~~~gL~~LqHRG~dsaGia~~~~~---------------~~~~~k~~Glv~~----vf 65 (475)
T PRK07631 11 ECGVFGIWG------HEEAAQITYYGLHSLQHRGQEGAGIVVTDGG---------------KLSAHKGLGLVTE----VF 65 (475)
T ss_pred CCcEEEEEC------CchhHHHHHHHHHHhcCCCcccCeEEEEcCC---------------EEEEEEcccccch----hh
Confidence 999999995 3356677889999999999999999998764 6889999998875 45
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++. .+ ..+.|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus 66 ~~~---~l---~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE 139 (475)
T PRK07631 66 QNG---EL---DALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTE 139 (475)
T ss_pred chh---hh---hccCCCEEEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHH
Confidence 431 11 2467999999999999999888999999754 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI 231 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~ 231 (636)
+|+++|.+... .++.+++++++++|+|+|||++++ .+.|+++||| |||++|..+ +||..
T Consensus 140 Vi~~Li~~~~~----------~~~~eai~~~~~~l~G~yalvi~~---~~~l~aaRDp~GirPL~~G~~~~~~~~ASE~~ 206 (475)
T PRK07631 140 VLAHLIKRSGA----------PTLKEQIKNALSMLKGAYAFLLMT---ETELYVALDPNGLRPLSIGRLGDAYVVASETC 206 (475)
T ss_pred HHHHHHHHHcC----------CCHHHHHHHHHHhCCCCceeeEEe---CCEEEEEECCCCCCCEEEEEeCCEEEEEeChH
Confidence 99999985331 379999999999999999999999 5789999999 999999987 55555
Q ss_pred ccc----cee-eccCCCe--eeCCCc
Q 006659 232 LKF----DNA-KGRNGGT--YARPAS 250 (636)
Q Consensus 232 ~~~----~~~-~~~~g~~--~~~~~~ 250 (636)
|+. ++. .++||++ +..+|.
T Consensus 207 Al~~~g~~~ir~v~PGeiv~i~~~g~ 232 (475)
T PRK07631 207 AFDVIGATYEREVEPGELLIINDEGM 232 (475)
T ss_pred HHhhcCcceEEEcCCCeEEEEECCcE
Confidence 652 222 7999999 344553
No 15
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.6e-38 Score=336.37 Aligned_cols=203 Identities=23% Similarity=0.409 Sum_probs=172.0
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++.+ .++...++.+|.+||||||||+||++.+++ .+.++|+.|.+++ +|
T Consensus 33 mCGI~Gi~~~~-----~~~~~~~~~gL~~LqHRGqdsaGIa~~~~~---------------~~~~~K~~Glv~~----vf 88 (500)
T PRK07349 33 ACGVFGVYAPG-----EEVAKLTYFGLYALQHRGQESAGIATFEGD---------------KVHLHKDMGLVSQ----VF 88 (500)
T ss_pred CCeEEEEECCC-----cCHHHHHHHHHHHhcccCcCcceEEEEeCC---------------EEEEEecCcchhh----hc
Confidence 99999999532 246677889999999999999999999764 6899999998875 55
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++. .+ ..+.|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.++||||
T Consensus 89 ~~~---~l---~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE 162 (500)
T PRK07349 89 DED---IL---EELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSE 162 (500)
T ss_pred chh---hh---hcCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHH
Confidence 531 11 2467999999999999998888999999876 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec------c---C
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK------D---G 227 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~------~---~ 227 (636)
+|+++|.+.+.. + .++.+++++++++|+|+|||++++ +++||++||+ |||++|.. . +
T Consensus 163 Vi~~li~~~~~~-~-------~~~~eai~~~~~~l~G~ya~vi~~---~~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~A 231 (500)
T PRK07349 163 MIAFAIAQAVDA-G-------KDWLEAAISAFQRCQGAFSLVIGT---PEGLMGVRDPNGIRPLVIGTLGEGGPGRYVLA 231 (500)
T ss_pred HHHHHHHHHHhc-C-------CCHHHHHHHHHHHhhhhEEEEEEe---CCEEEEEECCCCCCCeEEEecccCCCCeEEEE
Confidence 999999876643 1 479999999999999999999987 6899999999 89999986 2 4
Q ss_pred ccccccc----cee-eccCCCe
Q 006659 228 AVSILKF----DNA-KGRNGGT 244 (636)
Q Consensus 228 ~~~~~~~----~~~-~~~~g~~ 244 (636)
||..|+. ++. .++||++
T Consensus 232 SE~~Al~~lg~~~ir~v~PGei 253 (500)
T PRK07349 232 SETCALDIIGAEYLRDVEPGEL 253 (500)
T ss_pred eccchhhhcCCceEEEeCCCeE
Confidence 5555552 222 7999999
No 16
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.4e-37 Score=333.68 Aligned_cols=200 Identities=27% Similarity=0.398 Sum_probs=170.2
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++. .+....++.+|.+||||||||+||++.++. .+.++|+.|.+++ +|
T Consensus 11 mCGI~Gi~~~------~~~~~~~~~gL~~LqhRG~dsaGia~~d~~---------------~~~~~k~~GlV~~----vf 65 (471)
T PRK06781 11 ECGVFGIWGH------ENAAQVSYYGLHSLQHRGQEGAGIVVNNGE---------------KIVGHKGLGLISE----VF 65 (471)
T ss_pred cCeEEEEEcC------ccHHHHHHHHHHHhhCcCcCcceEEEEeCC---------------EEEEEecCcchhh----hc
Confidence 9999999953 345677889999999999999999998754 6889999998875 45
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++. .+ ..++|+++|||+||||+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus 66 ~~~---~l---~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE 139 (471)
T PRK06781 66 SRG---EL---EGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTE 139 (471)
T ss_pred chh---hH---hcCCCCEEEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHH
Confidence 431 12 2467999999999999998888999999754 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI 231 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~ 231 (636)
+|+++|.+.+. .++.+++++++++|+|+|||++++ +++++++||+ |||++|..+ +||..
T Consensus 140 vI~~Li~~~~~----------~~~~eai~~~~~~l~G~ya~vi~~---~~~l~aaRD~~GirPL~~g~~~~~~~~ASE~~ 206 (471)
T PRK06781 140 VLLHLIKRSTK----------DSLIESVKEALNKVKGAFAYLLLT---GNEMIVALDPNGFRPLSIGKMGDAYVVASETC 206 (471)
T ss_pred HHHHHHHHHcC----------CCHHHHHHHHHHhCCCcEEEEEEE---CCEEEEEECCCCCCCeEEEEECCEEEEEECch
Confidence 99999985431 379999999999999999999999 5799999999 999999987 55555
Q ss_pred cccc----ee-eccCCCe
Q 006659 232 LKFD----NA-KGRNGGT 244 (636)
Q Consensus 232 ~~~~----~~-~~~~g~~ 244 (636)
++.. +. .++||++
T Consensus 207 Al~~~g~~~ir~v~pGei 224 (471)
T PRK06781 207 AFDVVGATYIRDVEPGEL 224 (471)
T ss_pred HhhhcCCcEEEEeCCCEE
Confidence 5542 22 7999999
No 17
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=318.36 Aligned_cols=206 Identities=29% Similarity=0.442 Sum_probs=177.7
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++++. .++...++.+|.+||||||+++||++.++. ++..+|..|.+++ ||
T Consensus 4 ~CGV~Gi~~~~~----~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~---------------~~~~~K~~GLV~d----vF 60 (470)
T COG0034 4 MCGVFGIWGHKD----NNAAQLTYYGLYALQHRGQEAAGIAVADGK---------------RFHTHKGMGLVSD----VF 60 (470)
T ss_pred cceEEEEecCCc----cchHHHHHHHHHHHhhCCcccccEEEEcCc---------------eEEEEecCccchh----hc
Confidence 999999997541 347789999999999999999999999875 7999999998884 77
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++.. +...+.|+++|||+||+|.|..+..|+|||..+ .++.++++|||+|.|..+||++|.+.|..|.+.+|||
T Consensus 61 ~~~~-----~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsE 135 (470)
T COG0034 61 NERD-----LLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSE 135 (470)
T ss_pred Cchh-----hhhhccCcceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHH
Confidence 6521 112456789999999999999999999999988 6668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI 231 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~ 231 (636)
+++++|.+.+.+ .++.++++++++++.|+|+++++. .+.|+++||| |||++|..+ .++++
T Consensus 136 vll~l~a~~~~~---------~~~~~a~~~~~~~v~G~ys~v~~~---~~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt 203 (470)
T COG0034 136 VLLHLLARELDE---------DDIFEAVKEVLRRVKGAYALVALI---KDGLIAVRDPNGIRPLVLGKLGDGFYVVASET 203 (470)
T ss_pred HHHHHHHhhccc---------ccHHHHHHHHHhhcCCcEEEEEEE---CCeEEEEECCCCCccceeeecCCCCEEEEech
Confidence 999999976643 479999999999999999999999 6799999999 999999984 34455
Q ss_pred cccce------eeccCCCeee
Q 006659 232 LKFDN------AKGRNGGTYA 246 (636)
Q Consensus 232 ~~~~~------~~~~~g~~~~ 246 (636)
+.|+. ..++||+++.
T Consensus 204 ~Ald~iGa~~vRdv~pGE~v~ 224 (470)
T COG0034 204 CALDILGAEFVRDVEPGEAVI 224 (470)
T ss_pred hhhhcccceEEEecCCceEEE
Confidence 55552 2899999933
No 18
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2e-37 Score=329.99 Aligned_cols=198 Identities=23% Similarity=0.352 Sum_probs=168.4
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++ .++...++.+|.+||||||||+||++.++ .+.++|+.|.+++ +|
T Consensus 4 ~CGI~G~~~-------~~~~~~l~~gL~~LqhRG~dsaGIa~~~~----------------~~~~~K~~Glv~~----vf 56 (442)
T PRK08341 4 KCGIFAAYS-------ENAPKKAYYALIALQHRGQEGAGISVWRH----------------RIRTVKGHGLVSE----VF 56 (442)
T ss_pred ccEEEEEEC-------CCcHHHHHHHHHHhhccCcccceEEEECC----------------cEEEEecCCchhh----hh
Confidence 999999995 23567899999999999999999999973 5899999998775 55
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++.. + ..++|+++|||+||+|+|. ..|+|||... ..++++++|||+|+|+.+||++|...|+.|.++||||
T Consensus 57 ~~~~-----~-~~l~g~~~IGH~R~sT~G~--~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtE 128 (442)
T PRK08341 57 KGGS-----L-SRLKSNLAIGHVRYSTSGS--LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTE 128 (442)
T ss_pred cccc-----c-ccCCCCEEEEEeeccccCC--CcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHH
Confidence 5421 1 2567999999999999995 4689999875 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc----Cccccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD----GAVSIL 232 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~----~~~~~~ 232 (636)
+|++++.+.+.+++ ++.+++++++++|+|+|||++++ ++.|+++||+ |||++|..+ +||..|
T Consensus 129 VI~~li~~~~~~~~--------~~~~ai~~~~~~l~G~yal~i~~---~~~l~a~RD~~GirPL~~G~~~~~~~ASE~~A 197 (442)
T PRK08341 129 LIGISFLWHYSETG--------DEFEAMREVFNEVKGAYSVAILF---DGKIIVARDPVGFRPLSYGEGDGHYFASEDSA 197 (442)
T ss_pred HHHHHHHHHHHhcC--------CHHHHHHHHHHhccCceEEEEEE---CCEEEEEEcCCCceEEEEEECCEEEEEeCcHH
Confidence 99999987765543 67899999999999999999998 5899999999 999999876 555555
Q ss_pred ccce----eeccCCCe
Q 006659 233 KFDN----AKGRNGGT 244 (636)
Q Consensus 233 ~~~~----~~~~~g~~ 244 (636)
+... ..++||++
T Consensus 198 l~~~~~~v~~l~PGei 213 (442)
T PRK08341 198 LRMFVNEIRDVFPGEV 213 (442)
T ss_pred HHhhCCeEEEeCCCEE
Confidence 5332 27999999
No 19
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.4e-37 Score=330.91 Aligned_cols=206 Identities=28% Similarity=0.386 Sum_probs=173.2
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++. .++...++.+|.+||||||||+||++.++. .+.++|+.|++++ +|
T Consensus 21 mCGI~Gi~~~------~~~~~~~~~gL~~LqHRG~dsaGia~~~~~---------------~~~~~k~~Glv~~----vf 75 (479)
T PRK09123 21 ECGVFGILGH------PDAAALTALGLHALQHRGQEAAGIVSFDGE---------------RFHSERRMGLVGD----HF 75 (479)
T ss_pred cCeEEEEEcC------cchHHHHHHHHHHhcCcCccCCEEEEEECC---------------EEEEEecCcchhh----hh
Confidence 9999999953 356678999999999999999999998764 6899999999885 55
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++.. .+ ..++|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus 76 ~~~~--~l---~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSE 150 (479)
T PRK09123 76 TDAD--VI---ARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTE 150 (479)
T ss_pred hhhh--hh---hccCCCEEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHH
Confidence 5321 11 2467999999999999998888999999875 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI 231 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~ 231 (636)
+|+++|.+.+. .++.+++++++++|+|+|||++++ .++|+++||+ |||++|..+ +||..
T Consensus 151 vi~~Li~~~~~----------~~~~eai~~~~~~L~G~ya~vil~---~~~l~a~RD~~GirPL~~g~~~~~~~~ASE~~ 217 (479)
T PRK09123 151 VILHLIARSRK----------ASFLDRFIDALRQVEGAYSLVALT---NTKLIGARDPLGIRPLVLGELDGSPILASETC 217 (479)
T ss_pred HHHHHHHHHcc----------CCHHHHHHHHHHHhhcceeEEEEE---CCEEEEEECCCCCCceEEEEECCEEEEEECch
Confidence 99999986442 368999999999999999999998 5799999999 999999886 45555
Q ss_pred cccc----ee-eccCCCe--eeCCC
Q 006659 232 LKFD----NA-KGRNGGT--YARPA 249 (636)
Q Consensus 232 ~~~~----~~-~~~~g~~--~~~~~ 249 (636)
++.. +. .++||++ +..+|
T Consensus 218 Al~~~g~~~~r~v~pGeiv~i~~~g 242 (479)
T PRK09123 218 ALDIIGAEFVRDVEPGELVVIDEDG 242 (479)
T ss_pred HHhccCCceEEEECCCeEEEEeCCC
Confidence 5522 22 7999999 34455
No 20
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.7e-37 Score=330.36 Aligned_cols=208 Identities=27% Similarity=0.426 Sum_probs=172.8
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++.+ .++...++.+|.+||||||||+||++.++. ++.++|+.|.+++ +|
T Consensus 23 mCGI~Gi~~~~-----~~~~~~~~~gL~~LqHRGqdsaGIa~~d~~---------------~i~~~K~~Glv~~----vf 78 (510)
T PRK07847 23 ECGVFGVWAPG-----EEVAKLTYYGLYALQHRGQEAAGIAVSDGS---------------QILVFKDLGLVSQ----VF 78 (510)
T ss_pred cCeEEEEECCC-----cCHHHHHHHHHHHHhhhCcCcccEEEEeCC---------------EEEEEecCccHHH----hh
Confidence 99999999532 256677889999999999999999999764 6899999998875 56
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-C-CCcEEEEEcceecChHHHHHHHHhCCCc-----cc
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-A-GNEFLVVHNGVITNYEVLKETLIRHGFT-----FE 153 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~-~~~~~~~hNG~i~N~~~l~~~l~~~g~~-----~~ 153 (636)
++. .+ ..+.|+++|||+||+|+|.++..|+|||... . .++++++|||+|+|+.+||++|...|+. |.
T Consensus 79 ~d~---~l---~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~ 152 (510)
T PRK07847 79 DEQ---TL---ASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAG 152 (510)
T ss_pred chh---hh---hhcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCC
Confidence 531 11 2567999999999999998888999999865 2 5789999999999999999999988874 89
Q ss_pred cCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc----
Q 006659 154 SETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD---- 226 (636)
Q Consensus 154 ~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~---- 226 (636)
+.||||+|+++|.+...+ .++.+++++++++|+|+|||+++| .++||++||+ |||++|..+
T Consensus 153 s~sDSEVI~~Li~~~~~~---------~~~~eai~~~~~~l~G~yA~vi~d---~~~L~aaRDp~GirPL~~g~~~~~~~ 220 (510)
T PRK07847 153 ATTDTDLVTALLAHGAAD---------STLEQAALELLPTVRGAFCLVFMD---EHTLYAARDPQGVRPLVLGRLERGWV 220 (510)
T ss_pred CCCHHHHHHHHHHHhccC---------CCHHHHHHHHHHHhhhheEEEEEE---CCEEEEEECCCCCCCcEEEEECCeEE
Confidence 999999999999865421 279999999999999999999999 5799999999 999999986
Q ss_pred -Cccccccccee-----eccCCCe--eeCCCc
Q 006659 227 -GAVSILKFDNA-----KGRNGGT--YARPAS 250 (636)
Q Consensus 227 -~~~~~~~~~~~-----~~~~g~~--~~~~~~ 250 (636)
+||..++...+ .++||++ +..+|.
T Consensus 221 vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv 252 (510)
T PRK07847 221 VASETAALDIVGASFVREIEPGELIAIDADGL 252 (510)
T ss_pred EEechHHHhccCCcEEEEECcCEEEEEECCce
Confidence 45555554331 7999999 334443
No 21
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.2e-37 Score=329.07 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=174.1
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++.+ ..++...++.+|.+||||||||+||++.++. .+.++|+.|++++ +|
T Consensus 14 mCGI~Gi~~~~----~~~~~~~~~~gL~~LqhRG~dsaGIa~~~~~---------------~~~~~k~~G~v~~----~f 70 (469)
T PRK05793 14 ECGVFGVFSKN----NIDVASLTYYGLYALQHRGQESAGIAVSDGE---------------KIKVHKGMGLVSE----VF 70 (469)
T ss_pred CCeEEEEEcCC----CccHHHHHHHHHHHHhhhCCCcceEEEEeCC---------------EEEEEeccccccc----cc
Confidence 99999999642 1256678889999999999999999998764 6899999999875 45
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++. .+ ..++|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus 71 ~~~---~l---~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSE 144 (469)
T PRK05793 71 SKE---KL---KGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSE 144 (469)
T ss_pred chh---hH---hccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHH
Confidence 431 11 2467999999999999998888999999875 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI 231 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~ 231 (636)
+|+++|.+.+. .++.+++++++++|+|+||+++++ .++||++||+ |||++|..+ +||..
T Consensus 145 vi~~li~~~~~----------~~~~~ai~~~~~~l~G~ya~vi~~---~~~l~a~RD~~GirPL~~g~~~~~~~vASE~~ 211 (469)
T PRK05793 145 VILNLIARSAK----------KGLEKALVDAIQAIKGSYALVILT---EDKLIGVRDPHGIRPLCLGKLGDDYILSSESC 211 (469)
T ss_pred HHHHHHHHHcc----------CCHHHHHHHHHHHhhhhceEEEEE---CCEEEEEECCCCCCCcEEEEECCEEEEEEChH
Confidence 99999986542 368999999999999999999998 5799999999 899999987 55555
Q ss_pred cccc----ee-eccCCCe--eeCCCc
Q 006659 232 LKFD----NA-KGRNGGT--YARPAS 250 (636)
Q Consensus 232 ~~~~----~~-~~~~g~~--~~~~~~ 250 (636)
++.. .. .++||++ +..+|.
T Consensus 212 al~~~g~~~~r~v~pGeiv~i~~~g~ 237 (469)
T PRK05793 212 ALDTIGAEFIRDVEPGEIVIIDEDGI 237 (469)
T ss_pred HHhhcCcceEEEeCCCeEEEEECCce
Confidence 5542 22 7999999 334443
No 22
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9e-37 Score=327.51 Aligned_cols=200 Identities=22% Similarity=0.402 Sum_probs=168.8
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++. .+....++.||.+||||||||+||++.+++ .+.++|+.|.++++ |
T Consensus 1 MCGI~G~~~~------~~~~~~~~~~L~~LqhRG~DsaGia~~~~~---------------~~~~~k~~G~v~~~----f 55 (445)
T PRK08525 1 MCAVVGVINS------KNAAKLAYYALFAMQHRGQEASGISVSNGK---------------KIKTIKGRGLVTQV----F 55 (445)
T ss_pred CceEEEEEcC------ccHHHHHHHHHHHhhCcCcccceEEEEeCC---------------EEEEEEcCcchhhc----c
Confidence 9999999953 345677889999999999999999998754 68999999998864 4
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++. .+ ..++|+++|||+||+|+|.++..|+|||... ..++++++|||+|+|+.+||++|...|+.|.++||||
T Consensus 56 ~~~---~~---~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE 129 (445)
T PRK08525 56 NED---NL---KTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTE 129 (445)
T ss_pred chh---hh---hccCCcEEEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHH
Confidence 321 11 2457899999999999998888999999874 3678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c-----Cccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D-----GAVS 230 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~-----~~~~ 230 (636)
+|++++.+... .++.+++++++++|+|+|||++++ .++|+++||+ |||++|.. + +||.
T Consensus 130 vi~~l~~~~~~----------~~~~ea~~~~~~~L~G~fa~vi~~---~~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~ 196 (445)
T PRK08525 130 NLIHLIARSKK----------ESLKDRIIEALKKIIGAYCLVLLS---RSKMFAIRDPHGVRPLSLGRLKDGGYIVASET 196 (445)
T ss_pred HHHHHHHHHcC----------CCHHHHHHHHHHhcCCceEEEEEe---CCEEEEEECCCCCCCeEEEEecCCEEEEEECH
Confidence 99999985321 379999999999999999999998 5799999999 99999975 2 4555
Q ss_pred ccc----ccee-eccCCCe
Q 006659 231 ILK----FDNA-KGRNGGT 244 (636)
Q Consensus 231 ~~~----~~~~-~~~~g~~ 244 (636)
.++ .+.. .++||++
T Consensus 197 ~al~~~g~~~~~~~~pGe~ 215 (445)
T PRK08525 197 CAFDLIGAEFIRDVKPGEM 215 (445)
T ss_pred HHhhccCCcEEEEeCCCeE
Confidence 565 2222 7999999
No 23
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=297.95 Aligned_cols=216 Identities=27% Similarity=0.425 Sum_probs=178.7
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||++..+ .......+.....+|||||||++||++.++. +.+.+.|+.|++++ ||
T Consensus 1 eCGv~Gi~~a~----~~~~l~~l~~~~~aLQHRGQesAGIvts~~~--------------~~~~~~kG~Gmv~d----VF 58 (474)
T KOG0572|consen 1 ECGVFGIVAAG----EASRLPELALGCVALQHRGQESAGIVTSGGR--------------GRLYQIKGMGLVSD----VF 58 (474)
T ss_pred CCcEEEEEecC----ccccCcHHHhhhHHHhhCCccccceEeecCC--------------CceEEEeccchhhh----hh
Confidence 99999999764 2234456767778999999999999999864 47999999999885 67
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
.+.. + ..+.|+++|||+||+|.|.....|+|||... ..|.++++|||++.|+++||++|...|+.+.++||||
T Consensus 59 te~~---l---~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSE 132 (474)
T KOG0572|consen 59 TEDK---L---SQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSE 132 (474)
T ss_pred cHHH---H---hhCccceeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHH
Confidence 6422 2 2467999999999999999888999999998 7788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc---------C
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD---------G 227 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~---------~ 227 (636)
+|+++|...+... -+.+.+++...++.+++.+.|+||++++. .|.||++||| ||||+|.+. .
T Consensus 133 lil~~~a~~~~~~---~~~~~~d~~~ri~~~~~~~~g~Yslv~m~---~d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~ 206 (474)
T KOG0572|consen 133 LILQLIAYAPEDV---YRVDAPDWFARIRDVMELLPGAYSLVFMT---ADKLYAVRDPYGNRPLCIGRRSNPDGTEAWVV 206 (474)
T ss_pred HHHHHHHhchHhh---hcccCccHHHHHHHHHHhcCCceeEEEEE---ccEEEEEecCCCCccceEeeecCCCCcceEEE
Confidence 9999998775431 12245799999999999999999999999 5789999999 999999986 2
Q ss_pred cccccccc-ee-----eccCCCe--eeCCCc
Q 006659 228 AVSILKFD-NA-----KGRNGGT--YARPAS 250 (636)
Q Consensus 228 ~~~~~~~~-~~-----~~~~g~~--~~~~~~ 250 (636)
+++++.|+ .+ +++|||+ +..+|.
T Consensus 207 aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~ 237 (474)
T KOG0572|consen 207 ASESCAFLSIGARYEREVRPGEIVEISRNGV 237 (474)
T ss_pred EecceeeeecccEEEEeecCceEEEEecCCc
Confidence 33444443 21 8999999 344453
No 24
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=1.1e-35 Score=321.50 Aligned_cols=205 Identities=25% Similarity=0.417 Sum_probs=171.6
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++. +++...++.||.+|||||||++||++.++. .+..+|..|.+++ +|
T Consensus 1 MCGI~Gi~~~------~~~~~~~~~~L~~LqHRGqds~Gi~~~d~~---------------~~~~~k~~Glv~~----vf 55 (479)
T PLN02440 1 ECGVVGIFGD------PEASRLCYLGLHALQHRGQEGAGIVTVDGN---------------RLQSITGNGLVSD----VF 55 (479)
T ss_pred CceEEEEECC------ccHHHHHHHHHHHHHhhCcccceEEEEcCC---------------EEEEEecCCchhh----hc
Confidence 9999999952 345678999999999999999999999764 6888999998764 55
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE 159 (636)
++- .+ ..+.++++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus 56 ~~~---~l---~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsE 129 (479)
T PLN02440 56 DES---KL---DQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTE 129 (479)
T ss_pred chh---hh---hccCCcEEEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHH
Confidence 541 12 2467999999999999998888999999875 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Cccc
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVS 230 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~ 230 (636)
+|+++|.+.+. .++.+++.+++++|+|+||+++++ +++||++||+ |||++|... +||.
T Consensus 130 vi~~li~~~~~----------~~~~~a~~~~~~~l~G~fa~vi~~---~~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~ 196 (479)
T PLN02440 130 VLLHLIAISKA----------RPFFSRIVDACEKLKGAYSMVFLT---EDKLVAVRDPHGFRPLVMGRRSNGAVVFASET 196 (479)
T ss_pred HHHHHHHHhhh----------hhHHHHHHHHHHHhccceeeeEEE---CCEEEEEECCCCCCceEEEEeCCCEEEEEECc
Confidence 99999986542 368899999999999999999999 4679999999 899999753 4555
Q ss_pred ccccce-----eeccCCCe--eeCCC
Q 006659 231 ILKFDN-----AKGRNGGT--YARPA 249 (636)
Q Consensus 231 ~~~~~~-----~~~~~g~~--~~~~~ 249 (636)
.++... ..++|||+ +..+|
T Consensus 197 ~al~~~g~~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 197 CALDLIGATYEREVNPGEVIVVDKDK 222 (479)
T ss_pred hHHhccCCcEEEEeCCCeEEEEECCC
Confidence 555433 27999999 44556
No 25
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1e-35 Score=323.88 Aligned_cols=215 Identities=24% Similarity=0.357 Sum_probs=172.1
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||||+++. .++...++.||.+|||||||++||++++++ .+.++|+.|.+++ +|
T Consensus 1 MCGI~Gi~~~------~~~~~~~~~~L~aLqHRGqdsaGi~~~~~~---------------~~~~~k~~Glv~~----vf 55 (501)
T PRK09246 1 MCGIVGIVGH------SPVNQSIYDALTVLQHRGQDAAGIVTIDGN---------------RFRLRKANGLVRD----VF 55 (501)
T ss_pred CceEEEEEcC------cCHHHHHHHHHHHHhccCcceeEEEEEeCC---------------EEEEEccCCcccc----cc
Confidence 9999999953 234567889999999999999999998764 7899999998875 45
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhC-CCccccCCHhh
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRH-GFTFESETDTE 159 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~-g~~~~~~tDsE 159 (636)
++. .+ ..++|+++|||+||+|.|..+..|+|||.....++++++|||+|+|+.+||++|... ++.|.+.||||
T Consensus 56 ~~~---~l---~~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsE 129 (501)
T PRK09246 56 RTR---HM---RRLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSE 129 (501)
T ss_pred Ccc---hH---hhCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHH
Confidence 531 11 246799999999999999888899999986534459999999999999999999987 67889999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec----c-----C
Q 006659 160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK----D-----G 227 (636)
Q Consensus 160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~----~-----~ 227 (636)
+|++++.+.+.... +...+..++.+++++++++|+|+||++++.. +++|+++||| |||++|.. . +
T Consensus 130 vi~~li~~~l~~~~-g~~~~~~~l~eai~~~~~~l~Gays~v~~~~--~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~A 206 (501)
T PRK09246 130 VLLNVFAHELQKFR-GLPLTPEDIFAAVAAVHRRVRGAYAVVAMII--GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVA 206 (501)
T ss_pred HHHHHHHHHHHhcc-ccccCccCHHHHHHHHHHhcccceeeEEEec--CCcEEEEECCCCCCCeEEEeecCCCCCEEEEE
Confidence 99999987764311 1111224789999999999999999997753 4689999999 99999987 2 4
Q ss_pred ccccccccee-----eccCCCe--eeCCC
Q 006659 228 AVSILKFDNA-----KGRNGGT--YARPA 249 (636)
Q Consensus 228 ~~~~~~~~~~-----~~~~g~~--~~~~~ 249 (636)
||..|+...+ .++||++ +..+|
T Consensus 207 SE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 207 SESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred ECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 5554554322 7999999 45566
No 26
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=1.7e-35 Score=295.57 Aligned_cols=218 Identities=27% Similarity=0.410 Sum_probs=166.2
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccCC-CCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGY-DSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~-d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
|||||+++.+. .......+..||.+|||||| ||+|+++.+..+ ..+.-.++.+.++|+.|.+.++.
T Consensus 1 CGI~G~~~~~~---~~~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~------~~~~s~~~~~~~~K~~G~~~~v~---- 67 (249)
T cd01907 1 CGIFGIMSKDG---EPFVGALLVEMLDAMQERGPGDGAGFALYGDPD------AFVYSSGKDMEVFKGVGYPEDIA---- 67 (249)
T ss_pred CcEEEEEecCC---ccccHHHHHHHHHHHHhcCCCCCceEEEEcCCC------eEEEecCCCeEEEeeccCHHHHH----
Confidence 99999997531 12456789999999999999 999999985310 00000023699999999998754
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
+. +++ ..++++++|||+||+|+|..+..|+|||... +++++|||+|+|+.+||++|...|+.|.+.||||+
T Consensus 68 ~~-----~~~-~~~~~~~~igH~R~aT~g~~~~~n~qP~~~~---~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEv 138 (249)
T cd01907 68 RR-----YDL-EEYKGYHWIAHTRQPTNSAVWWYGAHPFSIG---DIAVVHNGEISNYGSNREYLERFGYKFETETDTEV 138 (249)
T ss_pred hh-----cCc-hheEEEEEEEEEeccCCCCCCccCCCCeecC---CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHH
Confidence 32 111 2467899999999999998888899999865 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc-----------CCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 161 IPKLAKFVFDKANEE-----------EGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 161 i~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
+++++.+.+.+++.. ++.....+.++++.++++|+|+|+|++++ ++.++++||+ |||++|..+
T Consensus 139 i~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~---~~~~~~~RD~~G~rPL~~g~~~ 215 (249)
T cd01907 139 IAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGT---PDGFIVIRDRIKLRPAVVAETD 215 (249)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEe---CCeEEEEecCCCCccEEEEEEC
Confidence 999998766443200 00000013446678889999999999998 5789999999 999999887
Q ss_pred -----Ccccccccce----e----eccCCCe
Q 006659 227 -----GAVSILKFDN----A----KGRNGGT 244 (636)
Q Consensus 227 -----~~~~~~~~~~----~----~~~~g~~ 244 (636)
+||..++... . .++||++
T Consensus 216 ~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~ 246 (249)
T cd01907 216 DYVAIASEECAIREIPDRDNAKVWEPRPGEY 246 (249)
T ss_pred CEEEEEEcHHHHhccCccchheEecCCCCce
Confidence 5555555432 1 6788876
No 27
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=100.00 E-value=8.4e-34 Score=304.72 Aligned_cols=202 Identities=27% Similarity=0.435 Sum_probs=168.2
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE 81 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~ 81 (636)
|||||+++.. ++....++.||.+|||||||++||++.++. .+.++|+.|.+++ +|+
T Consensus 1 CGI~Gi~~~~-----~~~~~~~~~~L~~lqhRG~ds~Gia~~d~~---------------~~~~~k~~glv~~----v~~ 56 (442)
T TIGR01134 1 CGVVGIYSQE-----EDAASLTYYGLYALQHRGQEAAGIAVSDGN---------------KIRTHKGNGLVSD----VFD 56 (442)
T ss_pred CEEEEEEcCC-----ccHHHHHHHHHHHHHhhCccceEEEEEeCC---------------EEEEEEcCCchhh----hcc
Confidence 9999999632 236678889999999999999999999764 7899999998775 565
Q ss_pred HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659 82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161 (636)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i 161 (636)
+. .+ ..+.|+++|||+||+|+|..+..|+|||.....++++++|||+|+|+.+|+++|...|+.|.+.||||+|
T Consensus 57 ~~---~l---~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi 130 (442)
T TIGR01134 57 ER---HL---ERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVL 130 (442)
T ss_pred hh---hh---hcccCcEEEEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH
Confidence 41 11 2456899999999999998888999999865234599999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc----Cccccccc
Q 006659 162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD----GAVSILKF 234 (636)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~----~~~~~~~~ 234 (636)
++++.+.... ..++.+++++++++|+|+|+|++++ +++|+++||+ |||++|..+ .+++.+.+
T Consensus 131 ~~li~~~~~~--------~~~~~~ai~~~~~~l~G~falvi~~---~~~L~a~RD~~G~rPL~~g~~~~~~~~ASE~~al 199 (442)
T TIGR01134 131 LHLLARERLE--------EDDLFEAIARVLKRVRGAYALVIMI---GDGLIAVRDPHGIRPLVLGKRGDGYVVASESCAL 199 (442)
T ss_pred HHHHHHhhcc--------cCCHHHHHHHHHHHhCccceEEEEE---CCEEEEEECCCCCCCcEEEEeCCEEEEEeCchHh
Confidence 9999865421 1479999999999999999999997 6899999999 999999887 34444333
Q ss_pred c------eeeccCCCe
Q 006659 235 D------NAKGRNGGT 244 (636)
Q Consensus 235 ~------~~~~~~g~~ 244 (636)
+ ...++||++
T Consensus 200 ~~~g~~~~r~v~pGei 215 (442)
T TIGR01134 200 DILGAEFIRDVEPGEA 215 (442)
T ss_pred cccCCcEEEEECCCeE
Confidence 3 127999999
No 28
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=4.4e-33 Score=280.08 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=166.3
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE 81 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~ 81 (636)
|||||+++. .+....+..||.+|+|||||++|++..++. .+.++|..|.+.+ +|+
T Consensus 1 Cgi~g~~~~------~~~~~~~~~~l~~l~~RG~D~~Gi~~~d~~---------------~~~~~k~~g~~~~----~~~ 55 (252)
T cd00715 1 CGVFGIYGA------EDAARLTYLGLYALQHRGQESAGIATSDGK---------------RFHTHKGMGLVSD----VFD 55 (252)
T ss_pred CEEEEEECC------cchHHHHHHHHHHHhccCcceeEEEEEeCC---------------EEEEEecCCcHHH----hhc
Confidence 999999953 244577889999999999999999999764 6888999887664 344
Q ss_pred HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
+.. + ....++++|||+||+|+|..+..|+|||... .+++++++|||+|+|+.+|+++|...++.+.+.||||+
T Consensus 56 ~~~---~---~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEv 129 (252)
T cd00715 56 EEK---L---RRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEV 129 (252)
T ss_pred ccc---h---hhCCCcEEEEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHH
Confidence 321 1 2356889999999999998888999999874 35789999999999999999999988888899999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI 231 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~ 231 (636)
+++++.+.+.+ .++.+++++++++|+|.||++++| +++|+++||+ |||++|..+ +|+..
T Consensus 130 i~~l~~~~~~~---------~~~~~al~~~~~~l~G~~a~~~~d---~~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~ 197 (252)
T cd00715 130 ILHLIARSLAK---------DDLFEAIIDALERVKGAYSLVIMT---ADGLIAVRDPHGIRPLVLGKLEGDGYVVASESC 197 (252)
T ss_pred HHHHHHHhhcc---------CCHHHHHHHHHHhccCceEEEEEE---CCEEEEEECCCCCCCeEEEEeCCCeEEEEECHH
Confidence 99999865432 379999999999999999999999 4899999999 999999864 44444
Q ss_pred cccce-----eeccCCCe
Q 006659 232 LKFDN-----AKGRNGGT 244 (636)
Q Consensus 232 ~~~~~-----~~~~~g~~ 244 (636)
++... ..++||++
T Consensus 198 al~~~~~~~~~~l~pg~~ 215 (252)
T cd00715 198 ALDIIGAEFVRDVEPGEI 215 (252)
T ss_pred HhcccCCcEEEEcCCCeE
Confidence 44332 27999999
No 29
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.96 E-value=1e-28 Score=244.48 Aligned_cols=205 Identities=30% Similarity=0.489 Sum_probs=160.8
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE 81 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~ 81 (636)
|||||+++.+.... ........++..++|||+|++|+++++.. ....+|..+.+++. +.
T Consensus 1 Cgi~g~~~~~~~~~--~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~---------------~~~~~~~~~~~~~~----~~ 59 (220)
T cd00352 1 CGIFGIVGADGAAS--LLLLLLLRGLAALEHRGPDGAGIAVYDGD---------------GLFVEKRAGPVSDV----AL 59 (220)
T ss_pred CEEEEEECCCCcch--hhHHHHHHHHHhhcccCCccCCeEEECCC---------------ceEEEEeccchhhh----hh
Confidence 99999997653211 11111146899999999999999999864 56667776665432 11
Q ss_pred HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659 82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161 (636)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i 161 (636)
. .+.....+.++|||+||+|+|.++..|+|||... .++++++|||+|+|+.+|+++|...+..+.+.||||++
T Consensus 60 ~------~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~-~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i 132 (220)
T cd00352 60 D------LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSE-DGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVI 132 (220)
T ss_pred h------hhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcC-CCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHH
Confidence 1 1113456899999999999998888999999976 47899999999999999999999988889999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c-----Cccccc
Q 006659 162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D-----GAVSIL 232 (636)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~-----~~~~~~ 232 (636)
++++.+.... ..+.+++++++++++|.|+|+++|.. +++++++||+ |||+++.. + .|+..+
T Consensus 133 ~~~~~~~~~~---------~~~~~~~~~~~~~~~G~~~~~~~d~~-~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~ 202 (220)
T cd00352 133 LHLLERLGRE---------GGLFEAVEDALKRLDGPFAFALWDGK-PDRLFAARDRFGIRPLYYGITKDGGLVFASEPKA 202 (220)
T ss_pred HHHHHHHhcc---------CCHHHHHHHHHHhCCccEEEEEEECC-CCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHH
Confidence 9999965532 23889999999999999999999976 5899999999 99999998 5 333333
Q ss_pred ccc-----eeeccCCCe
Q 006659 233 KFD-----NAKGRNGGT 244 (636)
Q Consensus 233 ~~~-----~~~~~~g~~ 244 (636)
+.. ...++||++
T Consensus 203 ~~~~~~~~~~~l~~g~~ 219 (220)
T cd00352 203 LLALPFKGVRRLPPGEL 219 (220)
T ss_pred HhhcCcccEEECCCCCC
Confidence 322 236888775
No 30
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=99.96 E-value=5.6e-29 Score=228.90 Aligned_cols=141 Identities=22% Similarity=0.279 Sum_probs=121.3
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHhcc--ccccccccccccccccccccCCCCeEEEEeCCcchHH-HHHHHHHHHhc--CC
Q 006659 493 LLVFGRGYNYATALEGALKVKEVAL--MHSEGILAGEMKHGPLALVDENLPILVIATRDACFSK-QQSVIQQLHAR--KG 567 (636)
Q Consensus 493 ~~~lG~G~~~~~A~e~alKl~E~~~--~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~-~~~~~~~~~~~--g~ 567 (636)
++++|+|++|++|+|+||||+|+++ +||++++.+||+|||++++++++++|+|.++|+.++. .++++++++++ |+
T Consensus 1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence 4799999999999999999999998 8999999999999999999999999999998876643 56899999988 89
Q ss_pred eEEEEecCCCCcCCCCCCcce-EEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659 568 RLIVMCSKGDAASIFPGGSCR-VIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT 635 (636)
Q Consensus 568 ~v~vi~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~ 635 (636)
++++|+.+.....+ ...+. .+.+|..++.+.|+++++|+|+|+|++|..+|+|||.||+++|+|||
T Consensus 81 ~vi~i~~~~~~~~~--~~~~~~l~~~~~~~~~l~p~~~iip~Qlla~~~A~~~G~dpD~Pr~~~~v~~~ 147 (151)
T cd05010 81 RVIAISPESDAGIE--DNSHYYLPGSRDLDDVYLAFPYILYAQLFALFNSIALGLTPDNPCPSGTVNRV 147 (151)
T ss_pred eEEEEEcCCccccc--cccceeecccCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEE
Confidence 99999875322111 01122 24556777899999999999999999999999999999999999987
No 31
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.95 E-value=6.9e-28 Score=240.10 Aligned_cols=206 Identities=20% Similarity=0.247 Sum_probs=156.7
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCC------------CCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEee
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGY------------DSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQ 68 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~------------d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 68 (636)
||+|||+++.+ -.....|+.....|.+|+. ||||++++.+.. .....+||+
T Consensus 1 MCr~~gy~g~~-----~~l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~------------~~~~~~~k~ 63 (251)
T TIGR03442 1 MCRHLAYLGAP-----VSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGK------------DTVPFRYRS 63 (251)
T ss_pred CceEeeecCCC-----eeHHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCC------------CCCceEEeC
Confidence 99999999632 1344566667777777665 999999997420 125899999
Q ss_pred cccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCC-CCCCCCCCcccCCCCcEEEEEcceecChH-----HHH
Q 006659 69 EGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGE-PAPRNSHPQTSGAGNEFLVVHNGVITNYE-----VLK 142 (636)
Q Consensus 69 ~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~-~~~~n~qPf~~~~~~~~~~~hNG~i~N~~-----~l~ 142 (636)
++++.+= ..++.+ .+..++.++|||+||||.|. .+..|+|||..+ +|+|+|||.|.|++ +|+
T Consensus 64 ~~pa~~d--~~l~~l-------~~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~g---~~~~aHNG~i~n~~~~~r~~L~ 131 (251)
T TIGR03442 64 TQPIWND--INFASL-------ARYVESGCVLAAVRSATVGMAIDESACAPFSDG---RWLFSHNGFVDNFRQTLYRPLR 131 (251)
T ss_pred CCccccC--hhHHHH-------HhhcccceEEEEeeeCCCCCCcchhcCCCCCcC---CEEEEeCCccCCchhhhhHHHH
Confidence 9876430 122222 13456889999999999996 577899999954 89999999999997 566
Q ss_pred HHHHhCCC-ccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhh-------hheeEEecCCCCeEEEE
Q 006659 143 ETLIRHGF-TFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGA-------YALIFKSQHYPNELIAC 214 (636)
Q Consensus 143 ~~l~~~g~-~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~-------~a~~~~d~~~~~~l~~~ 214 (636)
++|...++ .+.+.||||++++++.+.+.+.. +.++.++++++++.+.|. |+|++.| +++||++
T Consensus 132 ~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~------~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd---g~~l~a~ 202 (251)
T TIGR03442 132 DRLPDIFYLAIEGSTDSAHLFALLLNRLLEND------PRALEEALAEVLLILFSAAAAPRVRLNLLLTD---GSRLVAT 202 (251)
T ss_pred hcCChhhccCCCCCCHHHHHHHHHHHHHhhcC------CchHHHHHHHHHHHHHHHhhCcccceEEEEEc---CCEEEEE
Confidence 77766664 68899999999999998764321 247899999999999999 9999999 7899999
Q ss_pred EcCCceEEEecc-----Cccccccc-ceeeccCCCe
Q 006659 215 KRGSPLLLGVKD-----GAVSILKF-DNAKGRNGGT 244 (636)
Q Consensus 215 Rd~~pL~~G~~~-----~~~~~~~~-~~~~~~~g~~ 244 (636)
||+.|||+|..+ +|+.-..- .-..++||++
T Consensus 203 R~~~~L~~~~~~~~~vvASEpl~~~~~W~~v~pge~ 238 (251)
T TIGR03442 203 RWADTLYWLKDPEGVIVASEPYDDDPGWQDVPDRHL 238 (251)
T ss_pred EeCCeEEEEEcCCEEEEEeCCcCCCCCceEeCCCeE
Confidence 999999999976 33331111 1228999999
No 32
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.95 E-value=4.1e-26 Score=252.21 Aligned_cols=176 Identities=26% Similarity=0.360 Sum_probs=142.0
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|+++.... .......+..|+.+|+|||||+.|++...
T Consensus 1 MCGI~g~~~~~~~--~~~~~~~~~~m~~~l~hRGPD~~g~~~~~------------------------------------ 42 (578)
T PLN02549 1 MCGILAVLGCSDD--SQAKRSRVLELSRRLRHRGPDWSGLYGNE------------------------------------ 42 (578)
T ss_pred CCcEEEEEeCCCC--cchhHHHHHHHHHHhcCcCCCccCEEEeC------------------------------------
Confidence 9999999965421 11233567889999999999999998752
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
.+++||.|+++.+. ..+.||+... +++++++|||+|||+.+||++|.. +.|.+.||+|+
T Consensus 43 ----------------~~~Lgh~RLsI~d~--~~g~QP~~~~-~~~~~lv~NGEIyN~~eLr~~L~~--~~f~t~sD~Ev 101 (578)
T PLN02549 43 ----------------DCYLAHERLAIMDP--ESGDQPLYNE-DKTIVVTANGEIYNHKELREKLKL--HKFRTGSDCEV 101 (578)
T ss_pred ----------------CeEEEEeeeeEeCC--CCCCCCcCcC-CCCEEEEEEEEEEcHHHHHHHHHh--CCCCCCCHHHH
Confidence 26899999999986 4689999887 778999999999999999999975 77899999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI 231 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~ 231 (636)
|+++|. +|| .+++++|+|+|||++||.. .++++++||+ +|||+|... +|+..
T Consensus 102 il~ly~----~~G--------------~~~~~~L~G~FAf~i~D~~-~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~K 162 (578)
T PLN02549 102 IAHLYE----EHG--------------EEFVDMLDGMFSFVLLDTR-DNSFIAARDHIGITPLYIGWGLDGSVWFASEMK 162 (578)
T ss_pred HHHHHH----HHH--------------HHHHHhCCCceEEEEEECC-CCEEEEEECCCCCCCeEEEEecCCeEEEEecHH
Confidence 999998 454 6799999999999999987 6899999999 999999753 45545
Q ss_pred cccc----eeeccCCCeeeC-CCcccce
Q 006659 232 LKFD----NAKGRNGGTYAR-PASVQRA 254 (636)
Q Consensus 232 ~~~~----~~~~~~g~~~~~-~~~~~~~ 254 (636)
++.. ...++||++... +|...+.
T Consensus 163 aL~~~~~~I~~lpPGh~l~~~~~~~~~y 190 (578)
T PLN02549 163 ALCDDCERFEEFPPGHYYSSKAGGFRRW 190 (578)
T ss_pred HHHHHhCCEEEeCCCeEEEEcCCCEEEE
Confidence 5544 338999999432 3443333
No 33
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.95 E-value=2.9e-26 Score=252.27 Aligned_cols=167 Identities=26% Similarity=0.395 Sum_probs=144.5
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|++..+ . ..+....+..|...|.|||||..|++..
T Consensus 1 MCGI~g~~~~~-~--~~~~~~~~~~m~~~l~hRGPD~~g~~~~------------------------------------- 40 (542)
T COG0367 1 MCGIAGILNFK-N--LIDAKSIIEEMTKLLRHRGPDDSGVWIS------------------------------------- 40 (542)
T ss_pred CCceeeeeccc-c--cccchHHHHHHHHHhhccCCCccccEec-------------------------------------
Confidence 99999999764 1 1122577889999999999999999983
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
.++++||.|++..+..+ ..||+... ++++++++||+|||+.+||++|...|+.|.+.+|+|+
T Consensus 41 ---------------~~~~~gh~rL~i~d~~~--g~QP~~~~-~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEv 102 (542)
T COG0367 41 ---------------LNALLGHRRLSIVDLSG--GRQPMIKE-GGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEV 102 (542)
T ss_pred ---------------CCceeeeeEEEEecccc--CCCCcccC-CCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHH
Confidence 23789999999998754 79999885 6789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Cccccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSIL 232 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~~ 232 (636)
|++++. +|| .+++++|+|.|+|++||.. .++||++||+ +||+++..+ +|+-.+
T Consensus 103 il~~y~----~~g--------------~~~~~~l~G~fAfai~d~~-~~~l~laRD~~GikPLyy~~~~~~l~faSE~Ka 163 (542)
T COG0367 103 ILTLYE----EWG--------------EDCVEHLNGMFAFAIYDET-RQKLFLARDPFGVKPLYYTSKNENLAFASEIKA 163 (542)
T ss_pred HHHHHH----HHH--------------HHHHHHhccceEEEEEECC-CCEEEEEecCCCccccEEEecCCceEEEechhh
Confidence 999998 565 6799999999999999988 7899999999 888888887 466667
Q ss_pred ccce---------eeccCCCe
Q 006659 233 KFDN---------AKGRNGGT 244 (636)
Q Consensus 233 ~~~~---------~~~~~g~~ 244 (636)
++.. ..++||+.
T Consensus 164 l~~~~~~~~~~~i~~l~pg~~ 184 (542)
T COG0367 164 LLAHPVVRFLRDIKELPPGHL 184 (542)
T ss_pred hhhCCcccccCCeEEcCCCcE
Confidence 7665 38999999
No 34
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=257.55 Aligned_cols=175 Identities=26% Similarity=0.369 Sum_probs=143.3
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|+++.... .......+..|+.+|+|||||+.|++.....
T Consensus 1 MCGI~gi~~~~~~--~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~---------------------------------- 44 (586)
T PTZ00077 1 MCGILAIFNSKGE--RHELRRKALELSKRLRHRGPDWSGIIVLENS---------------------------------- 44 (586)
T ss_pred CceEEEEEecCCc--hhhHHHHHHHHHHHHhCCCCCcCCEEEeccC----------------------------------
Confidence 9999999965422 1223355778999999999999999875321
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
..+.+++||.|+++.+.. .+.||+... +++++++|||+|||+.+||++|...|+.|.+.||+|+
T Consensus 45 -------------~~~~~~lgh~RLsIvd~~--~g~QP~~~~-d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Ev 108 (586)
T PTZ00077 45 -------------PGTYNILAHERLAIVDLS--DGKQPLLDD-DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEI 108 (586)
T ss_pred -------------CCCcEEEEeccceecCCC--CCCCCcCCC-CCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHH
Confidence 013489999999999863 489999876 7789999999999999999999989999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHH-HHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c-----Cccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVV-EVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D-----GAVS 230 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~-----~~~~ 230 (636)
|+++|+ +|| . +++++|+|+|||++||.. .++++++||+ +|||+|.. + +|+.
T Consensus 109 il~ly~----~~G--------------~~~~l~~L~G~FAf~i~D~~-~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~ 169 (586)
T PTZ00077 109 IGHLYK----EYG--------------PKDFWNHLDGMFATVIYDMK-TNTFFAARDHIGIIPLYIGYAKDGSIWFSSEL 169 (586)
T ss_pred HHHHHH----HhC--------------HHHHHHhcCCCEEEEEEECC-CCEEEEEECCCCCcCeEEEEecCCeEEEEecH
Confidence 999998 565 4 799999999999999987 6899999999 99999974 3 4444
Q ss_pred ccccc----eeeccCCCeee
Q 006659 231 ILKFD----NAKGRNGGTYA 246 (636)
Q Consensus 231 ~~~~~----~~~~~~g~~~~ 246 (636)
.+++. ...++||+...
T Consensus 170 kaL~~~~~~I~~lpPGh~l~ 189 (586)
T PTZ00077 170 KALHDQCVEVKQFPPGHYYD 189 (586)
T ss_pred HHHHHhcCCEEEeCCCcEEE
Confidence 45543 34899999943
No 35
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.94 E-value=3e-26 Score=226.18 Aligned_cols=148 Identities=27% Similarity=0.418 Sum_probs=130.1
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE 81 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~ 81 (636)
|||+|+++.+. .......+..|+.+|+|||||++|++...
T Consensus 1 cGI~g~~~~~~---~~~~~~~~~~~~~~l~hRGpd~~~~~~~~------------------------------------- 40 (220)
T cd00712 1 CGIAGIIGLDG---ASVDRATLERMLDALAHRGPDGSGIWIDE------------------------------------- 40 (220)
T ss_pred CeEEEEEeCCC---CcchHHHHHHHHHHHhccCCCCCCEEEEC-------------------------------------
Confidence 99999997542 12345678899999999999999998862
Q ss_pred HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659 82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161 (636)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i 161 (636)
++++||+|++|.|.. .++||+... .++++++|||+|+|+.+|+++|...|+.+.+.||+|++
T Consensus 41 ---------------~~~lgh~rl~~~~~~--~~~qP~~~~-~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l 102 (220)
T cd00712 41 ---------------GVALGHRRLSIIDLS--GGAQPMVSE-DGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVI 102 (220)
T ss_pred ---------------CEEEEEEeeeecCcc--cCCCCeEeC-CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHHHH
Confidence 378999999999974 889999876 67899999999999999999999999989999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
++++. +|| .+++++|+|.|+|+++|.. .++++++||+ +||+++..+
T Consensus 103 ~~~~~----~~g--------------~~~~~~l~G~fa~vi~d~~-~~~l~~~rD~~G~~pLy~~~~~ 151 (220)
T cd00712 103 LHLYE----EWG--------------EDCLERLNGMFAFALWDKR-KRRLFLARDRFGIKPLYYGRDG 151 (220)
T ss_pred HHHHH----HHh--------------HHHHHHhhheEEEEEEECC-CCEEEEEECCCCCEeeEEEEEC
Confidence 99997 444 7899999999999999976 6999999999 999999877
No 36
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.93 E-value=6.6e-26 Score=250.41 Aligned_cols=172 Identities=22% Similarity=0.335 Sum_probs=141.0
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|+++..... ......+..|+.+|+|||||+.|++..+
T Consensus 1 MCGI~g~~~~~~~~--~~~~~~~~~m~~~l~hRGPD~~g~~~~~------------------------------------ 42 (554)
T PRK09431 1 MCGIFGILDIKTDA--DELRKKALEMSRLMRHRGPDWSGIYASD------------------------------------ 42 (554)
T ss_pred CceEEEEEcCCCcc--hhHHHHHHHHHHHhhCCCCCcCCEEEeC------------------------------------
Confidence 99999999654221 1123667889999999999999998752
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
.+++||+|+++.+. ..+.||+... ++++++++||+|||+.+|+++|... +.|.+.||+|+
T Consensus 43 ----------------~~~lgh~RLsIid~--~~g~QP~~~~-~~~~~lv~NGEIyN~~eLr~~L~~~-~~f~t~sD~Ev 102 (554)
T PRK09431 43 ----------------NAILGHERLSIVDV--NGGAQPLYNE-DGTHVLAVNGEIYNHQELRAELGDK-YAFQTGSDCEV 102 (554)
T ss_pred ----------------CeEEEEEEeeecCC--CCCCCCCCcC-CCCEEEEEEEEEecHHHHHHHHhcc-CCcCCCCHHHH
Confidence 26899999999986 3589999876 7789999999999999999999865 88899999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI 231 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~ 231 (636)
|+++|+ +|| .+++++|+|+|||++||.. .++++++||+ +|||+|..+ +|+..
T Consensus 103 il~ly~----~~G--------------~~~~~~L~G~FAf~i~D~~-~~~l~laRD~~GikPLyy~~~~~~~~~faSE~k 163 (554)
T PRK09431 103 ILALYQ----EKG--------------PDFLDDLDGMFAFALYDSE-KDAYLIARDPIGIIPLYYGYDEHGNLYFASEMK 163 (554)
T ss_pred HHHHHH----HHH--------------HHHHHhCCCceEEEEEECC-CCEEEEEeCCCCCcceEEEEeCCCeEEEecchH
Confidence 999998 455 6799999999999999987 6899999999 999999765 44444
Q ss_pred cccc----eeeccCCCeee-CCC
Q 006659 232 LKFD----NAKGRNGGTYA-RPA 249 (636)
Q Consensus 232 ~~~~----~~~~~~g~~~~-~~~ 249 (636)
+++. ...++||+... .+|
T Consensus 164 aL~~~~~~I~~lpPGh~l~~~~g 186 (554)
T PRK09431 164 ALVPVCKTIKEFPPGHYYWSKDG 186 (554)
T ss_pred HHHHhcCCEEEECCCeEEEECCC
Confidence 5543 23899999943 345
No 37
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.93 E-value=1.1e-23 Score=220.93 Aligned_cols=312 Identities=19% Similarity=0.176 Sum_probs=220.8
Q ss_pred HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEe
Q 006659 273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTME 352 (636)
Q Consensus 273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~ 352 (636)
.|.+.+.+.|+.+++.+..... .. +...+.++++|+++|+|+|+.++..++.++.+..++++...
T Consensus 3 ~m~~~~~~~~~q~~~a~~~~~~------------~~---~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~ 67 (337)
T PRK08674 3 GMLEEYLNWPEQFEEALEIAIS------------LD---LEEDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVN 67 (337)
T ss_pred hHHHHHHhHHHHHHHHHHhhhc------------cc---hhhhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEe
Confidence 4778888889988887643222 11 22335689999999999999999999988755557777665
Q ss_pred eccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCe----eEEcCCCCcccccch
Q 006659 353 IASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHC----GVHINAGAEIGVAST 428 (636)
Q Consensus 353 ~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~----~l~~~~~~e~~~~~t 428 (636)
.... .+...+++|++|++|.||+|++++++++.|+++|+++|+||+ +++|+++||. ++.++.+. ...
T Consensus 68 ~~~~---~~~~~~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~--~~~L~~~a~~~~~~~i~ip~~~----~~r 138 (337)
T PRK08674 68 RDYT---LPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS--GGKLKEMAKEHGLPVIIVPGGY----QPR 138 (337)
T ss_pred Cccc---hhhcCCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC--CchHHHHHHhcCCeEEEeCCCC----cch
Confidence 4322 233458999999999999999999999999999999999997 5689999887 77776432 233
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHH
Q 006659 429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALE 507 (636)
Q Consensus 429 ~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e 507 (636)
.++...+..++.+...++.... ...+++++.+.++++++.+....+. .+.++++|.++.+...+++ |+|..++.|+.
T Consensus 139 ~s~~~ll~~l~~~l~~~Gl~~~-~~~d~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~~~~~~pv~~-gs~~~~~~a~~ 216 (337)
T PRK08674 139 AALGYLFTPLLKILEKLGLIPD-KSAEVLETKIVLSELAEGLKEKVPTLKNLAKRLAGKLYGRIPVIY-GSGLTLAVAYR 216 (337)
T ss_pred hhHHHHHHHHHHHHHHcCCCcc-chhhHHHHHHHHHHHHHhhCcCCCcccCHHHHHHHHHhCCCCEEE-eCcccHHHHHH
Confidence 3333333333333322322221 2236777777777777665543333 6778899999888656655 79999999999
Q ss_pred HHHHHHHhccccccccccccccccccccccCCC----CeEEEEeCCcchH----HHHHHHHHHHhcCCeEEEEecCCCCc
Q 006659 508 GALKVKEVALMHSEGILAGEMKHGPLALVDENL----PILVIATRDACFS----KQQSVIQQLHARKGRLIVMCSKGDAA 579 (636)
Q Consensus 508 ~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~----~vi~l~~~~~~~~----~~~~~~~~~~~~g~~v~vi~~~~~~~ 579 (636)
++..+.|++++++.....+|..|+.+..++.+. .+.++.-.+...+ +.....+.++++|..++.|..++..
T Consensus 217 ~~~~~~Ena~~~~~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~~~g~~- 295 (337)
T PRK08674 217 WKTQINENAKYPAFYNEIPELNHNEIVGYERPQSLLKYFFVVVLRDSEHPRIKKRVEITIDILTEAVINVIEIYPEGNS- 295 (337)
T ss_pred HHHHHHHhcCCccccccCCcccccceeeccCchhhccceEEEEEcCCccHHHHHHHHHHHHHHHhcCCCeEEEecCCCc-
Confidence 999999999999999999999999998877542 2333332222222 2233344456778888888765421
Q ss_pred CCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCCCCCCCCC
Q 006659 580 SIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYNVDQPRNL 629 (636)
Q Consensus 580 ~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~pd~pr~l 629 (636)
.+..+.+++ .+++.++|+|..+|+||..-..+
T Consensus 296 ------------------~~~~l~~L~~~~d~as~~la~~~gvdP~~~~~i 328 (337)
T PRK08674 296 ------------------PLARIFSLIYLGDFASLYLAELRGVDPTPVPII 328 (337)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCcccchH
Confidence 334555555 57999999999999999876554
No 38
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.93 E-value=1.6e-25 Score=212.49 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=120.5
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|+++..... ......+..|+.+|+|||||+.|++..+..
T Consensus 1 MCGI~~~~~~~~~~--~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~---------------------------------- 44 (181)
T cd03766 1 MCGILCSVSPSGPH--INSSLLSEELLPNLRNRGPDYLSTRQLSVT---------------------------------- 44 (181)
T ss_pred CCcEEEEEeCCCCc--ccchhhHHHHHHHHHhcCCCccCCEEeecc----------------------------------
Confidence 99999999753211 001245778999999999999999886431
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
.+++.+||+|++..|. ..+.||+... .++++++|||+|||+.+|++ +.||+|+
T Consensus 45 --------------~~~~~l~~~rL~i~~~--~~~~QP~~~~-~~~~~lv~NGeIyN~~~l~~----------s~sDtEv 97 (181)
T cd03766 45 --------------NWTLLFTSSVLSLRGD--HVTRQPLVDQ-STGNVLQWNGELYNIDGVED----------EENDTEV 97 (181)
T ss_pred --------------ccEEEEEeeEEEecCC--CCCCCCCEeC-CCCEEEEECCEEECcccccC----------CCCHHHH
Confidence 1458999999999985 3579999876 56899999999999998875 6899999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK 225 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~ 225 (636)
|+++|.+... -.+++.+++++|+|+|||+++|.. .++||++||+ ||||++..
T Consensus 98 i~~l~~~~g~------------~~~~i~~~~~~L~G~fA~vi~d~~-~~~l~~aRD~~G~rPL~y~~~ 152 (181)
T cd03766 98 IFELLANCSS------------ESQDILDVLSSIEGPFAFIYYDAS-ENKLYFGRDCLGRRSLLYKLD 152 (181)
T ss_pred HHHHHHHHhh------------hHHHHHHHHHhcccceEEEEEeCC-CCEEEEEECCCCCcCcEEEee
Confidence 9999974321 126788999999999999999976 6899999999 88888876
No 39
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.93 E-value=2.2e-25 Score=249.45 Aligned_cols=150 Identities=23% Similarity=0.354 Sum_probs=130.4
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|++.++.. ......+..|+.+|+|||||+.|++..
T Consensus 1 McGI~G~~~~~~~---~~~~~~~~~m~~~l~hRGPD~~g~~~~------------------------------------- 40 (589)
T TIGR03104 1 MCGICGEIRFDGQ---APDVAAVVRMLAVLAPRGPDAGGVHAQ------------------------------------- 40 (589)
T ss_pred CcEEEEEEecCCC---cchHHHHHHHHHhhcCCCCCcCCcEec-------------------------------------
Confidence 9999999976532 122356888999999999999999864
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
+++++||+|+++.+. +..+.||+... +++++++|||+|||+.+|+++|...|+.|.+.+|+|+
T Consensus 41 ---------------~~~~lgh~rl~i~~~-~~~~~QP~~~~-~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Ev 103 (589)
T TIGR03104 41 ---------------GPVALGHRRLKIIDL-SEASQQPMVDA-ELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEV 103 (589)
T ss_pred ---------------CCEEEEEEeeEecCC-CcCCCCCeECC-CCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHH
Confidence 348999999999975 44789999876 6789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
++++|. +|| .+++++|+|+|||++||.. .++++++||+ +|||+...+
T Consensus 104 il~~y~----~~G--------------~~~~~~l~G~fa~~i~d~~-~~~l~laRD~~G~kPLyy~~~~ 153 (589)
T TIGR03104 104 ILKAYH----AWG--------------RDCVSRFNGMFAFAIWERD-SGRLLLARDRLGIKPLYYAEDA 153 (589)
T ss_pred HHHHHH----HHH--------------HHHHHHhhcceEEEEEeCC-CCEEEEEecCCCCCCeEEEEeC
Confidence 999998 565 7899999999999999987 6899999999 899988765
No 40
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.92 E-value=7e-25 Score=221.24 Aligned_cols=163 Identities=25% Similarity=0.305 Sum_probs=128.7
Q ss_pred cCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCC
Q 006659 33 RGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPA 112 (636)
Q Consensus 33 RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~ 112 (636)
+.+|||||++++.. ++.+.++|+++.+.+.. .+.. +...++++++|||+||||.|..+
T Consensus 39 ~h~DgwGia~~~~~-------------~~~~~~~k~~~~~~~~~--~~~~-------~~~~~~~~~~l~H~R~At~G~~~ 96 (257)
T cd01908 39 VHADGWGIGWYEGK-------------GGRPFRYRSPLPAWSDI--NLES-------LARPIKSPLVLAHVRAATVGPVS 96 (257)
T ss_pred cCCCCcEEEEecCC-------------CCeeeeeCCCCCCcCCc--chHH-------hhccccccEEEEEEecCCCCCCc
Confidence 37899999999731 12689999986543321 1111 11356789999999999999888
Q ss_pred CCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCC-CccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHH
Q 006659 113 PRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHG-FTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVM 191 (636)
Q Consensus 113 ~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g-~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (636)
..|+|||... +|+|+|||+|.|+.+|+..|...+ ..+.+.||||++++++.+.+...+ + .+...+.+++++++
T Consensus 97 ~~n~hPf~~~---~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~-~--~~~~~~~~al~~~~ 170 (257)
T cd01908 97 LENCHPFTRG---RWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERD-P--LDPAELLDAILQTL 170 (257)
T ss_pred cccCCCcccC---CEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHH
Confidence 8999999875 899999999999999999999887 678999999999999998775421 0 00012789999999
Q ss_pred HHhh-----hhhheeEEecCCCCeEEEEEcC--CceEEEecc
Q 006659 192 RHLE-----GAYALIFKSQHYPNELIACKRG--SPLLLGVKD 226 (636)
Q Consensus 192 ~~l~-----G~~a~~~~d~~~~~~l~~~Rd~--~pL~~G~~~ 226 (636)
++|+ |.|+|++.| +++|+++||+ +||+++...
T Consensus 171 ~~l~~~~~~~~~n~~~~d---g~~l~a~r~~~~~~L~~~~~~ 209 (257)
T cd01908 171 RELAALAPPGRLNLLLSD---GEYLIATRYASAPSLYYLTRR 209 (257)
T ss_pred HHHHHhCcCeEEEEEEEC---CCEEEEEEeCCCCceEEEecc
Confidence 9999 678887777 6899999999 799999863
No 41
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.92 E-value=2.4e-24 Score=200.53 Aligned_cols=152 Identities=51% Similarity=0.788 Sum_probs=138.4
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHH
Q 006659 479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSV 558 (636)
Q Consensus 479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~ 558 (636)
+++++++.+...++++++|+|.+|++|+|+++||+|+.++++.+++.+||+|||+..+++++++|++.++|++.+++.++
T Consensus 2 ~~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~ 81 (153)
T cd05009 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred hHHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHH
Confidence 35677888889999999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceee
Q 006659 559 IQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVT 634 (636)
Q Consensus 559 ~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~ 634 (636)
++.+++.|+++++|++.+.. . ...+..+.+|...+.++|+++++|+|+|++++|..+|+|||.||+++|++.
T Consensus 82 ~~~~~~~~~~vi~it~~~~s-~---~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a~~~g~~~~~~~~~~k~~~ 153 (153)
T cd05009 82 IKEVKARGAKVIVITDDGDA-K---DLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARGIDPDKPRNLAKSVT 153 (153)
T ss_pred HHHHHHcCCEEEEEecCCcc-c---ccCCeEEECCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCccC
Confidence 99999999999999987653 1 135678889977777999999999999999999999999999999999863
No 42
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.91 E-value=4.1e-24 Score=242.68 Aligned_cols=149 Identities=23% Similarity=0.347 Sum_probs=129.0
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||+|++.++... ......+..|+.+|+|||||+.|++..
T Consensus 1 McGI~G~~~~~~~~--~~~~~~~~~m~~~l~hRGpD~~g~~~~------------------------------------- 41 (628)
T TIGR03108 1 MCGITGIFDLTGQR--PIDRDLLRRMNDAQAHRGPDGGGVHVE------------------------------------- 41 (628)
T ss_pred CCEEEEEEECCCCc--cccHHHHHHHHHHhcCCCCCccCeEee-------------------------------------
Confidence 99999999654211 112356778999999999999999874
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
++++|||+|+++.+. ..+.||+... +++++++|||+|||+.+|+++|...|+.|.+.||+|+
T Consensus 42 ---------------~~~~lgh~rl~i~d~--~~~~qP~~~~-~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Ev 103 (628)
T TIGR03108 42 ---------------PGIGLGHRRLSIIDL--SGGQQPLFNE-DGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEV 103 (628)
T ss_pred ---------------CCEEEEEEeeeecCC--CCCCCCcCcC-CCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHH
Confidence 238999999999875 3689999876 7789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK 225 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~ 225 (636)
|+++|+ +|| .+++++|+|+|||++||.. .++++++||+ +|||++..
T Consensus 104 i~~~~~----~~g--------------~~~~~~l~G~fa~~~~d~~-~~~l~~~rD~~G~~PLyy~~~ 152 (628)
T TIGR03108 104 IVHAWE----EWG--------------EACVERFRGMFAFALWDRN-QETLFLARDRLGIKPLYYALL 152 (628)
T ss_pred HHHHHH----HHH--------------HHHHHHcCCCEEEEEEECC-CCEEEEEECCCCCcceEEEEe
Confidence 999997 455 7899999999999999987 6899999999 99999974
No 43
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.90 E-value=1.5e-23 Score=189.27 Aligned_cols=113 Identities=35% Similarity=0.614 Sum_probs=100.6
Q ss_pred cccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhcc
Q 006659 94 FSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKAN 173 (636)
Q Consensus 94 ~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~ 173 (636)
..+.++|||+||||+|.+...++|||... .++++++|||+|+|+.+||++|...|+.+.+.||||+|++++. ++|
T Consensus 10 ~~~~~~lgH~R~AT~G~~~~~~~hPf~~~-~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~----~~g 84 (133)
T PF13522_consen 10 LDGEAALGHTRYATVGSPTEENNHPFSNR-DGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIH----RWG 84 (133)
T ss_pred cCCCEEEEEeecCCCCCCCCcCCCCCcCC-CCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHH----HHH
Confidence 46889999999999999866677999333 6689999999999999999999999999999999999999994 443
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 174 EEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
++++++++|.|++++++.. +++++++||+ |||++|..+
T Consensus 85 --------------~~~l~~l~G~~a~~~~~~~-~~~l~~~rd~~g~~PL~~~~~~ 125 (133)
T PF13522_consen 85 --------------EEALERLDGAFAFAVYDKT-PNKLFLARDPLGIRPLYYGRDG 125 (133)
T ss_pred --------------HHHHHHhcCceEEEEEEcC-CCEEEEEEcCCCCCCEEEEEcC
Confidence 6788999999999999985 7999999999 999999976
No 44
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.90 E-value=1.6e-23 Score=217.82 Aligned_cols=150 Identities=25% Similarity=0.441 Sum_probs=116.4
Q ss_pred CCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH
Q 006659 60 GCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE 139 (636)
Q Consensus 60 ~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~ 139 (636)
+.+.-|||+.+.+.++. ++|.++. +..+.++++|||+||+|+|.+++.++|||. +++|||+|.|+.
T Consensus 166 S~~tivYKg~~~~~~l~-~~y~Dl~------~~~~~s~~~i~H~RysTnt~p~w~~AqPf~-------~laHNGeInt~~ 231 (361)
T PF00310_consen 166 SSRTIVYKGMGTPEQLA-EFYPDLQ------DEDFKSHFAIGHQRYSTNTFPSWENAQPFR-------ALAHNGEINTIR 231 (361)
T ss_dssp ESSEEEEEECC-GGGHH-HHCCGGG------CTTEEBSEEEEEEEE-SSSSCSGGGSSSEE-------EEEEEEEETTHH
T ss_pred CcchhhhhhccCHHHHH-HHHHhhc------cccccceEEEEEEecCCCCCCcchhcChHH-------HhhhccccccHH
Confidence 66778899999999887 7776653 246789999999999999999999999996 899999999999
Q ss_pred HHHHHHHhCCCcccc----------------CCHhhHHHHHHHHHHhhcc-------------ccCC----CCCCCHHHH
Q 006659 140 VLKETLIRHGFTFES----------------ETDTEVIPKLAKFVFDKAN-------------EEEG----DQPVTFSQV 186 (636)
Q Consensus 140 ~l~~~l~~~g~~~~~----------------~tDsE~i~~l~~~~~~~~~-------------~~~~----~~~~~~~~~ 186 (636)
.+++.+..++..+.+ .||||++.++++..+.... +... .+..++.++
T Consensus 232 ~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~ 311 (361)
T PF00310_consen 232 GNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEY 311 (361)
T ss_dssp HHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHH
T ss_pred HHHHHHHhhcccccCccccchhhcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHH
Confidence 999999988888776 8999999999997764420 0000 012346788
Q ss_pred HHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 187 VVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 187 ~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
++.+++.++|+|++++.| ++.++++||+ ||+++|...
T Consensus 312 ~~~~~~~~dGPaai~~~~---g~~~~a~~Dr~GLRP~~~~~~~ 351 (361)
T PF00310_consen 312 HASLMEPWDGPAAIIFTD---GNGVGAFLDRNGLRPLRYGITE 351 (361)
T ss_dssp HHHHHCC--CCEEEEEEC---SSEEEEEE-TT--S--EEEEET
T ss_pred HHHhhccCCCceEEEEEe---CCEEEEEECCCCCcceEEEEEC
Confidence 888888999999999998 6789999999 999999983
No 45
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.89 E-value=2.7e-22 Score=201.81 Aligned_cols=292 Identities=21% Similarity=0.257 Sum_probs=201.9
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f 80 (636)
||||++++.... ........+..-.++.|||||-+|.+..+.
T Consensus 1 MCGI~Av~~~~~---~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~----------------------------------- 42 (543)
T KOG0571|consen 1 MCGILAVLGHED---SEAKKPKALELSRRIRHRGPDWSGLAQRND----------------------------------- 42 (543)
T ss_pred CCceeeeecccc---hhhcChhhhhHHHhhcCCCCCcchhheecc-----------------------------------
Confidence 999999996321 122234555667789999999999877643
Q ss_pred HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659 81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV 160 (636)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~ 160 (636)
..+||-|+|..+. ...+||.... ++.+++.+||+|||+.+||+.+. .+.+++.+|.|+
T Consensus 43 -----------------~~l~heRLAIvdp--~sg~QPi~~~-~~~~~~~vNGEIYNH~~Lr~~~~--~~~~~T~sDcEv 100 (543)
T KOG0571|consen 43 -----------------NILGHERLAIVDP--TSGAQPIVGE-DGTYVVTVNGEIYNHKKLREHCK--DFEFQTGSDCEV 100 (543)
T ss_pred -----------------ccccccceeEecC--CcCCcccccC-CCcEEEEECceeccHHHHHHHhh--hcccccCCCcee
Confidence 2678999999987 4579999887 77888889999999999999987 478899999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659 161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI 231 (636)
Q Consensus 161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~ 231 (636)
|+++|.+ .| +.++...|+|.|+|+++|.. .++++++||| +|||+|... +|+..
T Consensus 101 Ii~lY~k----hg-------------~~~~~~~LDG~Fafvl~d~~-~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k 162 (543)
T KOG0571|consen 101 IIHLYEK----HG-------------GEQAICMLDGVFAFVLLDTK-DDKVVAARDPIGVTPLYYGWDSDGSVYFASEMK 162 (543)
T ss_pred eeehHhh----cC-------------chhHHHHhhhheEEEEecCC-CCeEEeccCCcCceeeEEEecCCCcEEEeeehh
Confidence 9999984 32 27899999999999999987 6899999999 899999887 45555
Q ss_pred ccccee----eccCCCeeeC-CCcccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccc
Q 006659 232 LKFDNA----KGRNGGTYAR-PASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLL 306 (636)
Q Consensus 232 ~~~~~~----~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~ 306 (636)
++-+.. ..+||+.+.. .|...|.++|-++... +.-.+++...++..++. ...++.
T Consensus 163 ~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~-~~s~p~d~~~~r~~~~~-aV~KRL------------------ 222 (543)
T KOG0571|consen 163 CLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWFDEN-IPSTPLDYLALRHTLEK-AVRKRL------------------ 222 (543)
T ss_pred hhhhhhhceeecCCcceeecccccccCCCCchhhhcc-CCCCcccHHHHHHHHHH-HHHHHh------------------
Confidence 655533 5889999543 4568899999888866 44456666444443321 111111
Q ss_pred cchHHHHHHHcCCC-eEEEE-eechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHH
Q 006659 307 GGLKDHLKTIRRSR-RIVFI-GCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQ 384 (636)
Q Consensus 307 ~~l~~~~~~l~~~~-~I~i~-G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~ 384 (636)
+.+.. -|.+- |--+|..|+..++. +.+.. .. . +. ...+..|++- +++++++
T Consensus 223 ---------M~d~p~GvLLSGGLDSSLvAsia~R~-lk~~~-~~--~--~~---------~lhsFaIGle---~SPDL~a 275 (543)
T KOG0571|consen 223 ---------MTDVPFGVLLSGGLDSSLVASIAARE-LKKAQ-AA--R--GS---------KLHSFAIGLE---DSPDLLA 275 (543)
T ss_pred ---------hccCceeEEeeCCchHHHHHHHHHHH-HHHhh-hh--c--CC---------CceEEEecCC---CChhHHH
Confidence 11211 13333 33466665555544 33321 00 0 00 1233444443 6899999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHI 417 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~ 417 (636)
+=+.|+-.|...--.|-+..--|..+-|+...+
T Consensus 276 arkVAd~igt~Hhe~~ft~qegidal~eVI~hL 308 (543)
T KOG0571|consen 276 ARKVADFIGTIHHEHTFTIQEGIDALDEVIYHL 308 (543)
T ss_pred HHHHHHHhCCcceEEEEcHHHHHHHHHHHheee
Confidence 999999999877666666566666665554433
No 46
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.89 E-value=7.2e-21 Score=195.31 Aligned_cols=273 Identities=18% Similarity=0.176 Sum_probs=189.8
Q ss_pred HHcCCCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcC
Q 006659 315 TIRRSRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENG 393 (636)
Q Consensus 315 ~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g 393 (636)
.++.+++|+++|+|+|..+|.+++.++.+.+ ++++..... + ......+++|++|++|.||+|.+++.+++.|+++|
T Consensus 17 ~~~~~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d--~-~l~~~~~~~dlvI~iS~SG~t~e~~~a~~~A~~~g 93 (308)
T TIGR02128 17 ILKIYDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKD--Y-RLPRFVDGKTLLIAVSYSGNTEETLSAVEEAKKKG 93 (308)
T ss_pred HHhcCCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcC--c-cccccCCCCeEEEEEcCCCCCHHHHHHHHHHHHcC
Confidence 3445899999999999999999999999876 466665433 2 22345689999999999999999999999999999
Q ss_pred CeEEEEEcCCCCcccccc----CeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHH
Q 006659 394 ALCVGITNTVGSAIARKT----HCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNK 469 (636)
Q Consensus 394 ~~vi~IT~~~~s~La~~a----d~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 469 (636)
+++|+||+ +++|++.| +.++.++.+. +...++..+++.+..+..... +... ++....+.. |+
T Consensus 94 ~~ii~iT~--~g~L~~~a~~~~~~~i~vP~~~----~~R~s~~~~~~~~l~~l~~~~---g~d~---~~~~~~l~~-~~- 159 (308)
T TIGR02128 94 AKVIAITS--GGRLEEMAKERGLDVIKIPKGL----QPRAAFPYLLTPLILMLIKPL---GIDI---EEAELLEGG-LD- 159 (308)
T ss_pred CEEEEECC--CcHHHHHHHhcCCeEEEcCCCC----CCeeeHHHHHHHHHHHHHHHc---CCCh---HHHHHHhcC-Cc-
Confidence 99999997 46899998 6777777642 234444333333222222111 1111 111111211 11
Q ss_pred HHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC---CCCeEEE
Q 006659 470 VREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDE---NLPILVI 545 (636)
Q Consensus 470 ~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~---~~~vi~l 545 (636)
.+. .+.++++|.++.+...++ .|.++..++|++++..|.|++++||....++|..|+.+..++. ...+++|
T Consensus 160 ----~~~~~n~Ak~LA~~l~~~~pvi-~~~~~~~~~A~R~k~~l~enak~~a~~~~lpe~~hn~i~~~~~~~~~~~~~~~ 234 (308)
T TIGR02128 160 ----TPKLKALAKRLAEEIYNRIPVI-YSSSPTRPIAERWKNEINENAKSPAYYNILPELNHNEIEGLEDPYGLYEIVFM 234 (308)
T ss_pred ----cccccCHHHHHHHHhhCCCCEE-EeCCccHHHHHHHHHHHHhhcCCccccccCCcccccceeeeccccccceEEEe
Confidence 122 688999999998865544 4665588899999999999999999999999999999998873 3334444
Q ss_pred EeC-CcchH-HHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCC
Q 006659 546 ATR-DACFS-KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYN 622 (636)
Q Consensus 546 ~~~-~~~~~-~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~ 622 (636)
..+ +..+. +-..+++++ .|..+..|...+. +.+..+++++ .+.+.++|||+.+|+|
T Consensus 235 ~d~~d~~~~~~r~~~~~~~--~~~~~~~i~~~g~-------------------~~l~~l~~li~~~d~as~yLA~~~g~d 293 (308)
T TIGR02128 235 SDESDHSRCPKRVDITEKI--LGVVFISIYSRGN-------------------SLLARILSLIHLAGYVSVKLAELRGVD 293 (308)
T ss_pred eccccchhHHHHHHHHHHH--hCCceEEEEecCC-------------------CHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 432 22211 112344444 3767777665442 3566777666 4699999999999999
Q ss_pred CCCCCCCc
Q 006659 623 VDQPRNLA 630 (636)
Q Consensus 623 pd~pr~l~ 630 (636)
|..-..+.
T Consensus 294 P~~~~~i~ 301 (308)
T TIGR02128 294 PEPVPPID 301 (308)
T ss_pred CccccHHH
Confidence 98766554
No 47
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.87 E-value=3.9e-22 Score=218.96 Aligned_cols=148 Identities=26% Similarity=0.404 Sum_probs=126.0
Q ss_pred EEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHH
Q 006659 4 IFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEV 83 (636)
Q Consensus 4 I~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~ 83 (636)
|+|++.+++... .....+..|+.+|+|||||+.|++..+
T Consensus 1 i~g~~~~~~~~~--~~~~~~~~m~~~l~hRGPD~~g~~~~~--------------------------------------- 39 (467)
T TIGR01536 1 IAGFFDLDDKAV--EEDEAILRMSDTIAHRGPDASGIEYKD--------------------------------------- 39 (467)
T ss_pred CEEEEecCCcch--hhHHHHHHHHHHhhCcCCCcCCcEEcc---------------------------------------
Confidence 678887664321 113468889999999999999998221
Q ss_pred hhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHH
Q 006659 84 AETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPK 163 (636)
Q Consensus 84 ~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~ 163 (636)
+++++||+|+++.+.. .+.||+... ++++++++||+|||+.+|+++|...|+.|.+.||+|++++
T Consensus 40 ------------~~~~lgh~rl~i~d~~--~~~qP~~~~-~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~ 104 (467)
T TIGR01536 40 ------------GNAILGHRRLAIIDLS--GGAQPMSNE-GKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILH 104 (467)
T ss_pred ------------CCEEEEEEEeEEeCCC--CCCCeeECC-CCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence 3489999999999863 358999877 6789999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 164 LAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
+|. +|| .+++++|+|+|+|++||.. .++|+++||+ +|||++..+
T Consensus 105 ~y~----~~g--------------~~~~~~l~G~fa~~i~D~~-~~~l~laRD~~G~kPLyy~~~~ 151 (467)
T TIGR01536 105 LYE----EWG--------------EECVDRLDGMFAFALWDSK-KGELFLARDRFGIKPLYYAYDG 151 (467)
T ss_pred HHH----HHH--------------HHHHHHcCCcEEEEEEECC-CCEEEEEECCCCCcCeEEEEEC
Confidence 997 565 7899999999999999987 6999999999 999998876
No 48
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.83 E-value=5.8e-20 Score=165.12 Aligned_cols=125 Identities=50% Similarity=0.729 Sum_probs=114.6
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEE
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGIT 400 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT 400 (636)
+|+|+|+|+|+.+|.++++++.++++.++....+.++.+....++++|++|++|+||+|++++++++.||++|+++|+||
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT 80 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAIT 80 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEE
Confidence 59999999999999999999999887888887777776666668899999999999999999999999999999999999
Q ss_pred cCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHH
Q 006659 401 NTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAI 445 (636)
Q Consensus 401 ~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~ 445 (636)
++++|||+++||++|.++.++|.....+.++++++..+++++..+
T Consensus 81 ~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~~~~~~l~l~~~~~ 125 (126)
T cd05008 81 NVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLLALAL 125 (126)
T ss_pred CCCCChHHHhCCEEEEecCCCcceechhhhHHHHHHHHHHHHHHh
Confidence 999999999999999998887887778899999999999988764
No 49
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.83 E-value=7.1e-20 Score=191.21 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=128.1
Q ss_pred CcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHH
Q 006659 62 PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVL 141 (636)
Q Consensus 62 ~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l 141 (636)
+..|||+.|.+.++. .+|.++. +..+.+.++++|+||+||+.+++.++|||. .++|||+|+|+..+
T Consensus 174 ~~iVyKGm~~~~~v~-~~Y~DL~------~~~~~s~~al~H~RfSTNT~p~W~~AqPfr-------~laHNGEInT~~gn 239 (413)
T cd00713 174 RTIVYKGMLLPEQLG-QFYPDLQ------DPRFESAFALVHSRFSTNTFPSWPLAQPFR-------YLAHNGEINTIRGN 239 (413)
T ss_pred ceEEEeccccHHHHH-HhccccC------cccceEEEEEEEEecCCCCCCCcccCCcce-------eEEEcccccCHHHH
Confidence 789999999988877 7887653 246789999999999999999999999996 48999999999999
Q ss_pred HHHHHhCCCc-----------------cccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHH----------------
Q 006659 142 KETLIRHGFT-----------------FESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVV---------------- 188 (636)
Q Consensus 142 ~~~l~~~g~~-----------------~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------- 188 (636)
++.+..+... ..+.||||++.++++..... | .++.+|+.
T Consensus 240 r~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~-g-------~~l~~A~~mliPeaw~~~~~m~~~ 311 (413)
T cd00713 240 RNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRS-G-------RSLPEAMMMLIPEAWQNNPTMDPE 311 (413)
T ss_pred HHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHc-C-------CCHHHHHHHhCChhhccCccCCHH
Confidence 9988653211 13589999999999876643 2 46777777
Q ss_pred ---------HHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccccccce--------eeccCCC
Q 006659 189 ---------EVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSILKFDN--------AKGRNGG 243 (636)
Q Consensus 189 ---------~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~~~~~~--------~~~~~g~ 243 (636)
.+++.++|+|++++.| ++.++++||+ |||++|... .+++++.++. +.+.||+
T Consensus 312 ~r~fYey~~~~me~~dGp~aiv~~d---g~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe 388 (413)
T cd00713 312 LRAFYEYHSSLMEPWDGPAAIAFTD---GRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGE 388 (413)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEEe---CCEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCe
Confidence 6778899999999988 6899999999 999999765 3445555542 2678898
Q ss_pred e
Q 006659 244 T 244 (636)
Q Consensus 244 ~ 244 (636)
+
T Consensus 389 ~ 389 (413)
T cd00713 389 M 389 (413)
T ss_pred E
Confidence 8
No 50
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.78 E-value=6.2e-18 Score=172.66 Aligned_cols=148 Identities=22% Similarity=0.220 Sum_probs=123.9
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA 380 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~ 380 (636)
+.+++++++++++.|.++++|+++|.|+|..+|.++++.|.++ |.++........ ......++++|++|+||+||+|+
T Consensus 113 ~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~i-g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~ 191 (281)
T COG1737 113 NLLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRI-GLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTR 191 (281)
T ss_pred HhcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHc-CCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcH
Confidence 4567889999999999999999999999999999999999997 555555444433 33455689999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCccccc-chhhHHHHHHHHHHHHHHHhcCCC
Q 006659 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVA-STKAYTSQIVVMAMLALAIGGDTI 450 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~-~t~s~~~~~~~l~lL~~~~~~~~~ 450 (636)
+++++++.||++|+++|+||++..|||++.||++|.++...+.... .+.+..++++++.+|...+....+
T Consensus 192 e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~~ 262 (281)
T COG1737 192 EIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRRG 262 (281)
T ss_pred HHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999775544332 234677788888888888876653
No 51
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=99.76 E-value=3.4e-19 Score=179.78 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=85.1
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhcccc------CCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchh
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYR------GYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIES 74 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~R------G~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~ 74 (636)
||-+||+-+..+. .+...|..+..| -+||||++++++. ...++|++.++.+
T Consensus 1 MC~Llg~s~~~p~--------~~~~sl~~~~~~~~~~~~h~DGwGiawy~~~---------------~~~~~k~~~pa~~ 57 (271)
T PF13230_consen 1 MCRLLGMSSNRPT--------DINFSLTSFAARGGKTPPHPDGWGIAWYDGG---------------GPRVFKSPRPAWN 57 (271)
T ss_dssp -------------------------------------------EEEEEESSS---------------S-EEEEESS-CCC
T ss_pred Ccccccccccccc--------ccccccccccccccCcCCCCCeeEEEEEeCC---------------eEEEEECCCCCcC
Confidence 9999999864321 122233333333 3899999999865 7899999875433
Q ss_pred hhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccc
Q 006659 75 LVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFE 153 (636)
Q Consensus 75 l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~ 153 (636)
- ..++.+.. ..+++.++|+|+|.||.|..+..|+|||... .+++|+|+|||.|.+++.++... +...
T Consensus 58 ~--~~~~~l~~------~~i~S~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~----~~~~ 125 (271)
T PF13230_consen 58 S--PNLRLLAD------YKIRSRLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR----YQPV 125 (271)
T ss_dssp ---HHHHHHHH-------H-EEEEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH----HT--
T ss_pred C--chHHHHhh------CCccCCEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc----cccC
Confidence 1 12222211 1356889999999999999999999999975 45789999999999988776322 2367
Q ss_pred cCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhh--hhhheeEEecCCCCeEEEEEcCCceEEE
Q 006659 154 SETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLE--GAYALIFKSQHYPNELIACKRGSPLLLG 223 (636)
Q Consensus 154 ~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--G~~a~~~~d~~~~~~l~~~Rd~~pL~~G 223 (636)
+.||||.++.++...+.+.+...........+++.++.+.+. |.++|++.| ++.||+.|+ ++|++-
T Consensus 126 G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsD---G~~l~a~~~-~~l~~~ 193 (271)
T PF13230_consen 126 GTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSD---GERLFAHRY-TSLYYL 193 (271)
T ss_dssp S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE----SS-EEEEEE-ESSS--
T ss_pred CCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEEC---CceEEEEEc-CCeeEE
Confidence 899999999999887654220000001123445555565554 678888887 689999998 334333
No 52
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.76 E-value=1.8e-17 Score=158.40 Aligned_cols=146 Identities=21% Similarity=0.176 Sum_probs=115.4
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD 381 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e 381 (636)
..++.++++++++.|.++++|+++|+|.|+.+|.++.+.+.++ +..+...... . ...++++|++|++|+||+|++
T Consensus 13 ~~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~--~--~~~~~~~Dv~I~iS~sG~t~~ 87 (179)
T TIGR03127 13 SRIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHL-GFNVYVVGET--T--TPSIKKGDLLIAISGSGETES 87 (179)
T ss_pred HhCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhC-CCeEEEeCCc--c--cCCCCCCCEEEEEeCCCCcHH
Confidence 4567788999999999999999999999999999998888774 5555544322 1 245789999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc-------cchhh--HHHHHHHHHHHHHHHhcCCCCc
Q 006659 382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV-------ASTKA--YTSQIVVMAMLALAIGGDTIST 452 (636)
Q Consensus 382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~-------~~t~s--~~~~~~~l~lL~~~~~~~~~~~ 452 (636)
++++++.||++|+++|+||++++|||+++||++|.++...+... ....+ ..+++.++.+|...+.......
T Consensus 88 ~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l~~~~~~~~~~~ 167 (179)
T TIGR03127 88 LVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKGLD 167 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999877543211 11122 2256677777777776665443
No 53
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=99.76 E-value=2.5e-17 Score=157.26 Aligned_cols=147 Identities=24% Similarity=0.191 Sum_probs=117.8
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD 381 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e 381 (636)
+.++.++++++++.|.++++|+++|+|+|+.+|.++.+.+.++ ++.+...... ....++++|++|++|+||+|++
T Consensus 16 ~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~----~~~~~~~~D~vI~iS~sG~t~~ 90 (179)
T cd05005 16 DKIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLNVYVVGET----TTPAIGPGDLLIAISGSGETSS 90 (179)
T ss_pred HhcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhC-CCeEEEeCCC----CCCCCCCCCEEEEEcCCCCcHH
Confidence 4566788999999999999999999999999999988888764 5666554321 1345789999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc--------c-chhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659 382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV--------A-STKAYTSQIVVMAMLALAIGGDTIST 452 (636)
Q Consensus 382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~--------~-~t~s~~~~~~~l~lL~~~~~~~~~~~ 452 (636)
++++++.||++|+++|+||++.+|||+++||++|.++.+.+... + .+.+.++++.++.+|...+.......
T Consensus 91 ~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ld~l~~~~~~~~~~~ 170 (179)
T cd05005 91 VVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELGVS 170 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcccccCCCCccccccCccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999988543321 1 11223567778888887777665544
Q ss_pred H
Q 006659 453 Q 453 (636)
Q Consensus 453 ~ 453 (636)
.
T Consensus 171 ~ 171 (179)
T cd05005 171 E 171 (179)
T ss_pred H
Confidence 3
No 54
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.75 E-value=3.9e-19 Score=159.05 Aligned_cols=107 Identities=27% Similarity=0.493 Sum_probs=61.4
Q ss_pred eeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCC
Q 006659 102 HTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181 (636)
Q Consensus 102 H~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~ 181 (636)
|+||+|.+ +..+.||+.....++++++|||+|+|+++|+++|...|+.+.+.+|+|++++++++ +.+|+
T Consensus 1 h~rl~~~~--~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~-~~~~~-------- 69 (125)
T PF13537_consen 1 HVRLSTDD--SDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEE-YREWG-------- 69 (125)
T ss_dssp --------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH----HG--------
T ss_pred Cccccccc--ccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHH-HHHHH--------
Confidence 99999944 46789999942267899999999999999999999888888999999999999985 11233
Q ss_pred CHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 182 ~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
++++++|+|.|||++||.. .++++++||+ |||+++..+
T Consensus 70 ------~~~~~~l~G~fa~v~~d~~-~~~l~~~rD~~G~rpLyy~~~~ 110 (125)
T PF13537_consen 70 ------EDFLKRLDGPFAFVIWDKD-KKRLFLARDRFGIRPLYYGRTD 110 (125)
T ss_dssp ------GGGGGT--EEEEEEEEETT-E--EEEEE-TT--S--EEEEET
T ss_pred ------HHHHHhCCceEEEEEEeCC-CcEEEEEECCCCCCCeEEEEeC
Confidence 7899999999999999976 5789999998 899998885
No 55
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=99.75 E-value=1.6e-17 Score=150.09 Aligned_cols=127 Identities=29% Similarity=0.404 Sum_probs=113.8
Q ss_pred HcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcc-cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCC
Q 006659 316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDR-QAPIYREDTAVFVSQSGETADTLQALEYASENGA 394 (636)
Q Consensus 316 l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~ 394 (636)
|.++++|+++|+|+|+.+|..+++++.++++.........++.+. ...++++|++|++|+||++.+++++++.||++|+
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~ 81 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGA 81 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCC
Confidence 678999999999999999999999999988888888888776554 4567899999999999999999999999999999
Q ss_pred eEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHH
Q 006659 395 LCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA 442 (636)
Q Consensus 395 ~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~ 442 (636)
++|+||++.++++++.+|++|.++.+++...+.+.++++++.++.++.
T Consensus 82 ~vi~iT~~~~~~l~~~ad~~l~~~~~~~~~~~~~~s~~~~~~~~~~l~ 129 (131)
T PF01380_consen 82 PVILITSNSESPLARLADIVLYIPTGEESQSASTSSFSAQLSLLDALF 129 (131)
T ss_dssp EEEEEESSTTSHHHHHSSEEEEEESSCGSSSSHSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCchhhhCCEEEEecCCCccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988775667788888888777654
No 56
>PRK15482 transcriptional regulator MurR; Provisional
Probab=99.74 E-value=2.6e-17 Score=169.18 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=118.0
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA 380 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~ 380 (636)
..++.++++++++.|.++++|+++|+|.|+.+|.++.+.+.++ |..+........ ......++++|++|++|+||+|+
T Consensus 118 ~~id~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~ 196 (285)
T PRK15482 118 ALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI-GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKK 196 (285)
T ss_pred HhcCHHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhC-CCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 4566788999999999999999999999999999999999885 555555432222 22234578999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCccc-ccchhhHHHHHHHHHHHHHHHhcCC
Q 006659 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIG-VASTKAYTSQIVVMAMLALAIGGDT 449 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~-~~~t~s~~~~~~~l~lL~~~~~~~~ 449 (636)
+++++++.|+++|+++|+||++.+|||+++||++|.++.+.... .....+.++++.++.+|...+....
T Consensus 197 ~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~ss~~~~~~~id~L~~~~~~~~ 266 (285)
T PRK15482 197 EIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLN 266 (285)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999997754321 1234566777777777776665543
No 57
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.73 E-value=7.6e-17 Score=164.83 Aligned_cols=166 Identities=23% Similarity=0.315 Sum_probs=125.7
Q ss_pred CCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH
Q 006659 60 GCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE 139 (636)
Q Consensus 60 ~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~ 139 (636)
|....|||+.|.+.++. ++|.++. +..++|.++|+|+|++||..+++..+|||. .+||||+|.++.
T Consensus 173 s~~t~VYKG~~~p~~V~-~~y~dl~------~~~~~s~~~l~HsRFSTNT~p~W~~AHPfr-------~lvHNGEInT~~ 238 (371)
T COG0067 173 SSRTIVYKGVGLPEDVA-EFYLDLD------DERYKSAIALVHTRFSTNTFPSWPLAHPFR-------LLVHNGEINTYG 238 (371)
T ss_pred CCCeEEEecccCHHHHH-HHHhhcc------chhhceeEEEEEeccCCCCCCCCCccCcce-------eeeecceecccc
Confidence 66678999999999887 6665543 246789999999999999999999999997 459999999999
Q ss_pred HHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHH---------HHHHhhhhhheeEEecCCCCe
Q 006659 140 VLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVE---------VMRHLEGAYALIFKSQHYPNE 210 (636)
Q Consensus 140 ~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~G~~a~~~~d~~~~~~ 210 (636)
-.++.+..+++.+.+.+|+|.+..++--..... .+..++-.+++- -...|.|+|++..-....++.
T Consensus 239 gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~-----sDs~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~ 313 (371)
T COG0067 239 GNRNWLEARGYKFESPTDGEVLAKLLPILMRGG-----SDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEG 313 (371)
T ss_pred cHHHHHHHhhcccccCccHHHHHHHHHHhcccC-----CcchhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcce
Confidence 999999999999999999999999986544321 111222222222 224678999998876543567
Q ss_pred EEEEEcC---CceEEEecc-----CcccccccceeeccCCCe
Q 006659 211 LIACKRG---SPLLLGVKD-----GAVSILKFDNAKGRNGGT 244 (636)
Q Consensus 211 l~~~Rd~---~pL~~G~~~-----~~~~~~~~~~~~~~~g~~ 244 (636)
..+.+|+ +|.+.|-.. +++..|+++.-.++|+..
T Consensus 314 ~afye~~~~l~epwdGpa~~~f~dgse~gA~ldrngLrp~Ry 355 (371)
T COG0067 314 RAFYEDHSALMEPWDGPADIVFTDGSEEGAILDRNGLRPARY 355 (371)
T ss_pred EEEEehhhhCCCCccCCcceeEEeeeeeeeeeccCCCCcceE
Confidence 7888888 777777665 556667777666666666
No 58
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.73 E-value=7.5e-17 Score=145.25 Aligned_cols=122 Identities=23% Similarity=0.290 Sum_probs=100.0
Q ss_pred CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEE
Q 006659 320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVG 398 (636)
Q Consensus 320 ~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~ 398 (636)
++|+++|+|+|+.+|.+++..+.++ +.++....+.+... ....++++|++|++|+||+|++++++++.||++|+++|+
T Consensus 1 ~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSST-GTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred CeEEEEeCcHhHHHHHHHHHHhhcC-CCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999999774 66666655554432 334568999999999999999999999999999999999
Q ss_pred EEcCCCCccccccCeeEEcCCCCcc---cccchhhHHHHHHHHHHHH
Q 006659 399 ITNTVGSAIARKTHCGVHINAGAEI---GVASTKAYTSQIVVMAMLA 442 (636)
Q Consensus 399 IT~~~~s~La~~ad~~l~~~~~~e~---~~~~t~s~~~~~~~l~lL~ 442 (636)
||++.+|||++.||++|.++.+.+. ....+.++++++.++.+|.
T Consensus 80 iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~~~~~~~~d~l~ 126 (128)
T cd05014 80 ITGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDALA 126 (128)
T ss_pred EeCCCCCchhhhCCEEEECCCCcccccCCCCchHHHHHHHHHHHHHh
Confidence 9999999999999999999876553 3445667776666666554
No 59
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.72 E-value=6e-17 Score=169.93 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=123.8
Q ss_pred ccccccchHHHHHHHcCC-CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCC
Q 006659 302 KSVLLGGLKDHLKTIRRS-RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGET 379 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~-~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t 379 (636)
+.++. +++++++.+.++ ++|+++|+|+|+++|.++++.|.+ .|.++....+.+..+ ....++++|++|++|+||+|
T Consensus 30 ~~~~~-~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t 107 (326)
T PRK10892 30 QYINQ-DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES 107 (326)
T ss_pred HHHHH-HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhc-CCceeEEeChHHhhccccccCCCCCEEEEEeCCCCC
Confidence 34454 689999998777 799999999999999999999987 466666654444322 23457899999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc---ccccchhhHHHHHHHHHHHHHHHhcCCCCcH
Q 006659 380 ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE---IGVASTKAYTSQIVVMAMLALAIGGDTISTQ 453 (636)
Q Consensus 380 ~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e---~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~ 453 (636)
++++++++.||++|+++|+||++++|||+++||++|.++++++ .....+.|++++++....|...+...++...
T Consensus 108 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g~~~ 184 (326)
T PRK10892 108 SEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTA 184 (326)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999987665 2345678888888888888887777665543
No 60
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.72 E-value=5.8e-17 Score=166.14 Aligned_cols=146 Identities=20% Similarity=0.176 Sum_probs=117.7
Q ss_pred cccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeec-cchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659 303 SVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIA-SDLVDRQAPIYREDTAVFVSQSGETAD 381 (636)
Q Consensus 303 ~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~dlvI~iS~SG~t~e 381 (636)
.++.++++++++.|.++++|+++|+|+|..+|.++.+.|.++ |..+..... .........++++|++|++|+||++++
T Consensus 112 ~~~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~ 190 (278)
T PRK11557 112 VNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKI-GINAVAERDMHALLATVQALSPDDLLLAISYSGERRE 190 (278)
T ss_pred hcCHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhC-CCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHH
Confidence 455688999999999999999999999999999999999886 555544322 222233345789999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC-cccccchhhHHHHHHHHHHHHHHHhcCC
Q 006659 382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA-EIGVASTKAYTSQIVVMAMLALAIGGDT 449 (636)
Q Consensus 382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~-e~~~~~t~s~~~~~~~l~lL~~~~~~~~ 449 (636)
++++++.||++|+++|+||++.+||++++||++|++.... ........+++++++++.+|...+....
T Consensus 191 ~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~~~~~~ 259 (278)
T PRK11557 191 LNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQGMLTDLLFMALIQQD 259 (278)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999875532 2222356788888888888777776543
No 61
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.71 E-value=5.5e-16 Score=160.07 Aligned_cols=147 Identities=19% Similarity=0.204 Sum_probs=118.3
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA 380 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~ 380 (636)
..++.+.++++++.|.++++|+++|+|+|..+|.++...+.++ |+.+........ ......++++|++|++|.||+|+
T Consensus 123 ~~l~~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~ 201 (292)
T PRK11337 123 SILDVDEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRI-GVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTS 201 (292)
T ss_pred HhcCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhC-CCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 3466788999999999999999999999999999998888875 666655543332 22334578999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc-cccchhhHHHHHHHHHHHHHHHhcCC
Q 006659 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI-GVASTKAYTSQIVVMAMLALAIGGDT 449 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~-~~~~t~s~~~~~~~l~lL~~~~~~~~ 449 (636)
+++++++.||++|+++|+||++.+||++++||++|.++..... ....+.+.++++.++.+|...+...+
T Consensus 202 ~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~~i~d~L~~~l~~~~ 271 (292)
T PRK11337 202 DVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTAQGSPLLGENAAARIAQLNILDAFFVSVAQLN 271 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764321 12234566777778888777776553
No 62
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=5.3e-16 Score=145.81 Aligned_cols=144 Identities=19% Similarity=0.143 Sum_probs=118.7
Q ss_pred cchHHHHHHHc-CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhccc-CCCCCCcEEEEEcCCCCCHHHHH
Q 006659 307 GGLKDHLKTIR-RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ-APIYREDTAVFVSQSGETADTLQ 384 (636)
Q Consensus 307 ~~l~~~~~~l~-~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~dlvI~iS~SG~t~e~i~ 384 (636)
+.+.++++.|. ..++|+++|+|.|.++|..++..|.. .|.++.+..|.|..+.. +.+.++|++|+||.||+|.+++.
T Consensus 26 ~~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s-~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~ 104 (202)
T COG0794 26 EDFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLAS-TGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLN 104 (202)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHc-cCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHH
Confidence 46677777664 48899999999999999888888877 48999999999886654 46899999999999999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc---cchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV---ASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~---~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
++..+|+.|+++|+||++++|+|++.||++|.++..+|... +.|.|-+.++..-..++..+...++-
T Consensus 105 ~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gdal~~~L~e~~~f 174 (202)
T COG0794 105 LAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGDALAGTLFEARGF 174 (202)
T ss_pred HHHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccccCcccCCcchhhHHHHhhccHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999776543 34555555666555666666555543
No 63
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.70 E-value=1.6e-16 Score=141.09 Aligned_cols=100 Identities=26% Similarity=0.453 Sum_probs=92.1
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhccc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEE
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ-APIYREDTAVFVSQSGETADTLQALEYASENGALCVGI 399 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~I 399 (636)
+|+++|+|+|+++|..+++++.++.++.+....+.++.... ..++++|++|++|+||+|++++++++.||++|+++|+|
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~i 80 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEE
Confidence 59999999999999999999999878888888887775443 45789999999999999999999999999999999999
Q ss_pred EcCCCCccccccCeeEEcCCC
Q 006659 400 TNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 400 T~~~~s~La~~ad~~l~~~~~ 420 (636)
|++++|||+++||++|.++++
T Consensus 81 T~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 81 TDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred ECCCCCcHHHhCCEEEEccCC
Confidence 999999999999999999876
No 64
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.67 E-value=1.8e-15 Score=155.67 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=116.5
Q ss_pred ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659 302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA 380 (636)
Q Consensus 302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~ 380 (636)
..++.++++++++.|.++++|+++|+|+|+.+|..++..+.++ ++++........ .......+++|++|++|+||+|+
T Consensus 111 ~~id~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~ 189 (284)
T PRK11302 111 QSLDPSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRF-NVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTK 189 (284)
T ss_pred HhcCHHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhc-CCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCH
Confidence 3566788999999999999999999999999999988888774 666655443222 11223568999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc-cccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI-GVASTKAYTSQIVVMAMLALAIGGDTI 450 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~-~~~~t~s~~~~~~~l~lL~~~~~~~~~ 450 (636)
+++++++.||++|+++|+||+ .++|++++||++|.++...+. ......+.+++++++.+|...+....+
T Consensus 190 ~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~l~~~~~ 259 (284)
T PRK11302 190 SLVELAQLARENGATVIAITS-AGSPLAREATLALTLDVPEDTDIYMPMVSRIAQLTVIDVLATGFTLRRG 259 (284)
T ss_pred HHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEecCCCccchhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998 799999999999988753322 122345667777788888777765543
No 65
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.67 E-value=1.6e-15 Score=138.33 Aligned_cols=134 Identities=26% Similarity=0.323 Sum_probs=108.4
Q ss_pred chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCCHHHHHHH
Q 006659 308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGETADTLQAL 386 (636)
Q Consensus 308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~i~al 386 (636)
+++++++.|.++++|+++|+|.|..+|..++..+.++ +.++......+... .....+++|++|++|.+|+++++++++
T Consensus 2 ~i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~ 80 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRL-GKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAA 80 (139)
T ss_pred HHHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHc-CCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHH
Confidence 4678899999999999999999999999999999986 55665555444432 223467899999999999999999999
Q ss_pred HHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHH
Q 006659 387 EYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALA 444 (636)
Q Consensus 387 ~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~ 444 (636)
+.++++|+++|+||++.++++++++|++|.++...+. .....+.+++.+++++...
T Consensus 81 ~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~d~l 136 (139)
T cd05013 81 EIAKERGAKVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALIDAL 136 (139)
T ss_pred HHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCCccc--cccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876543 2234455555555555443
No 66
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.66 E-value=8.4e-16 Score=160.98 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=115.5
Q ss_pred cchHHHHHHHcCC-CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCHHHHH
Q 006659 307 GGLKDHLKTIRRS-RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETADTLQ 384 (636)
Q Consensus 307 ~~l~~~~~~l~~~-~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~e~i~ 384 (636)
+++.++++.+.++ ++|+++|+|+|+.+|.++++.|.++ +.++....+.+. ......++++|++|++|+||+|+++++
T Consensus 29 ~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~ 107 (321)
T PRK11543 29 DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAST-GTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDL 107 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcC-CCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHH
Confidence 4577888888776 4999999999999999999999885 666655544443 233456789999999999999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc---cccchhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI---GVASTKAYTSQIVVMAMLALAIGGDTIST 452 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~---~~~~t~s~~~~~~~l~lL~~~~~~~~~~~ 452 (636)
+++.||++|+++|+||++++|||+++||++|.++...+. ....+.+.++.++....|...+...++..
T Consensus 108 ~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~dsL~~~~l~~~g~~ 178 (321)
T PRK11543 108 IIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFN 178 (321)
T ss_pred HHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999988765332 23345666667777777766666655543
No 67
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.64 E-value=3.2e-15 Score=153.15 Aligned_cols=145 Identities=28% Similarity=0.364 Sum_probs=114.7
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCCc----EEE-----------eeccch------hcccCCC
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDLP----VTM-----------EIASDL------VDRQAPI 364 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~~----~~~-----------~~~~e~------~~~~~~~ 364 (636)
+.++.+++.+++.++||++|+|+|...| ..+..++.+++..+ ... ....+. ......+
T Consensus 50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l 129 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL 129 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence 4467888899999999999999999888 66776666654211 110 001111 1112347
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHHH
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAMLA 442 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~ 442 (636)
+++|++|++|+||+|++++.+++.||++|+++|+||++++|||++.+|+.|.++.++|....+| ++.+++.+++++|.
T Consensus 130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~ls 209 (299)
T PRK05441 130 TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMIS 209 (299)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCccccccccccchhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999998888755454 67788999999999
Q ss_pred HHHhcCCCC
Q 006659 443 LAIGGDTIS 451 (636)
Q Consensus 443 ~~~~~~~~~ 451 (636)
..+....+.
T Consensus 210 t~~~~~~gk 218 (299)
T PRK05441 210 TGVMIRLGK 218 (299)
T ss_pred HHHHHHccH
Confidence 988877654
No 68
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.63 E-value=1.1e-14 Score=146.34 Aligned_cols=145 Identities=26% Similarity=0.335 Sum_probs=113.5
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCCc----EEEe-----------eccc---h---hcccCCC
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDLP----VTME-----------IASD---L---VDRQAPI 364 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~~----~~~~-----------~~~e---~---~~~~~~~ 364 (636)
+.++.+++.|++.+||+++|+|+|...| ..+..++.+++.-+ .... ...+ . ......+
T Consensus 37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l 116 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL 116 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence 4467788889999999999999998877 66777777765311 1111 0000 0 1123446
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHHH
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAMLA 442 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~ 442 (636)
+++|++|+||+||+|++++++++.||++|+++|+||++++|+|++.+|+.|.+..++|....++ ++.+++.+++++|.
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~ 196 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKAGTAQKLALNMLS 196 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCCCCccccCccccccHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999988887643333 57788999999998
Q ss_pred HHHhcCCCC
Q 006659 443 LAIGGDTIS 451 (636)
Q Consensus 443 ~~~~~~~~~ 451 (636)
..+....++
T Consensus 197 t~~~~~~g~ 205 (257)
T cd05007 197 TAVMIRLGK 205 (257)
T ss_pred HHHHHHcch
Confidence 888776654
No 69
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=99.61 E-value=6.2e-15 Score=140.48 Aligned_cols=115 Identities=22% Similarity=0.241 Sum_probs=90.3
Q ss_pred ccchHHHHHHH----cCCCeEEEEeechhHHHHHHHHHHHHHhc-----CCcEEEee--ccchhc--------------c
Q 006659 306 LGGLKDHLKTI----RRSRRIVFIGCGTSYNAALAARPILEELS-----DLPVTMEI--ASDLVD--------------R 360 (636)
Q Consensus 306 ~~~l~~~~~~l----~~~~~I~i~G~G~S~~aa~~~~~~~~~~~-----~~~~~~~~--~~e~~~--------------~ 360 (636)
.++++++++.+ .++++|+++|+|+|+.+|..+.+.|.+.. ++++.... +.++.. .
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQV 95 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHH
Confidence 34455555554 55899999999999999999888775322 45555444 221100 1
Q ss_pred cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659 361 QAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 361 ~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~ 420 (636)
...++++|++|++|+||+|++++++++.||++|+++|+||++.+|||+++||++|.++..
T Consensus 96 ~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~ 155 (177)
T cd05006 96 EALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSD 155 (177)
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCC
Confidence 124689999999999999999999999999999999999999999999999999998763
No 70
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.60 E-value=1.1e-14 Score=170.02 Aligned_cols=220 Identities=15% Similarity=0.222 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHHhhhhhccccccccce
Q 006659 19 ILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHA 98 (636)
Q Consensus 19 ~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~ 98 (636)
....++..-..++++-.+..+.++.+-. .+.-|||+.+.+.++. .+|.++. +..+.+.+
T Consensus 156 fer~Ly~~R~~~e~~~~~~~~~Yi~SlS--------------~rtiVYKGml~~~ql~-~fY~DL~------d~~~~s~~ 214 (1485)
T PRK11750 156 FERRLFIARRRIEKRLADDKDFYVCSLS--------------NLVIIYKGLMMPADLP-RFYLDLA------DLRLESAI 214 (1485)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEecC--------------CCcceeEecccHHHHH-HhhhhhC------CcceeEEE
Confidence 3445555555555543223444444432 3789999999999887 8888764 24678999
Q ss_pred EEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCcc----------------ccCCHhhHHH
Q 006659 99 GIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTF----------------ESETDTEVIP 162 (636)
Q Consensus 99 ~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~----------------~~~tDsE~i~ 162 (636)
++.|.|++||..++|..+|||. .++|||+|....-.++.+..+++.+ .+.|||+.+-
T Consensus 215 al~HsRFSTNT~PsW~~AqPFR-------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~lD 287 (1485)
T PRK11750 215 CVFHQRFSTNTLPRWPLAQPFR-------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSLD 287 (1485)
T ss_pred EEEECcCCCCCCCCCCcCCCce-------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHHH
Confidence 9999999999999999999996 4799999999888777766554321 3578999999
Q ss_pred HHHHHHHhhccccCCCCCCCHHHHH------------------HHH-------HHHhhhhhheeEEecCCCCeEEEEEcC
Q 006659 163 KLAKFVFDKANEEEGDQPVTFSQVV------------------VEV-------MRHLEGAYALIFKSQHYPNELIACKRG 217 (636)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-------~~~l~G~~a~~~~d~~~~~~l~~~Rd~ 217 (636)
+.++... ..| .++.+|+ +++ ++-++|+|++++.| ++.+++.||+
T Consensus 288 n~lElL~-~~G-------~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~---g~~i~A~~Dr 356 (1485)
T PRK11750 288 NMLELLL-AGG-------MDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD---GRYAACNLDR 356 (1485)
T ss_pred HHHHHHH-HcC-------CCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe---CCEEEEecCC
Confidence 9998665 333 2333332 222 23368999999999 6899999999
Q ss_pred ---CceEEEecc-----Ccccccccce--------eeccCCCeeeCCCcccceeeeeccchhhhhcCChHHHHHHH
Q 006659 218 ---SPLLLGVKD-----GAVSILKFDN--------AKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKE 277 (636)
Q Consensus 218 ---~pL~~G~~~-----~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~y~~~m~ke 277 (636)
|||++|+.. .++|++.++. +.|.||++..-|...-+-+.--++.......-+|..|..+.
T Consensus 357 nGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id~~~g~i~~~~eik~~~a~~~py~~wl~~~ 432 (1485)
T PRK11750 357 NGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDTRTGRILHSAEIDNDLKSRHPYKEWLEKN 432 (1485)
T ss_pred CCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEeCCCCeEeccHHHHHHHHhcCCHHHHHHhh
Confidence 999999865 4556666652 27899999332211111112223333344455677666543
No 71
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.59 E-value=2.7e-14 Score=162.59 Aligned_cols=148 Identities=20% Similarity=0.255 Sum_probs=118.0
Q ss_pred ccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCC
Q 006659 300 KAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGE 378 (636)
Q Consensus 300 ~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~ 378 (636)
+.+.++.++++++++.|.++++|+++|+|+|+.+|.++++.+.++ ++.+........ ......++++|++|+||+||+
T Consensus 449 t~~~id~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~l-g~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~ 527 (638)
T PRK14101 449 LREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRF-GIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGR 527 (638)
T ss_pred HHHhcCHHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcC-CceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 446788899999999999999999999999999999999988885 566554433322 222345789999999999999
Q ss_pred CHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc-ccccchhhHHHHHHHHHHHHHHHhcCC
Q 006659 379 TADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE-IGVASTKAYTSQIVVMAMLALAIGGDT 449 (636)
Q Consensus 379 t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e-~~~~~t~s~~~~~~~l~lL~~~~~~~~ 449 (636)
|++++++++.||++|+++|+||+. .|||+++||++|.+..... .+.....+..++++++.+|...+...+
T Consensus 528 t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~~~~~~~~~s~~~~~s~~~~l~lid~L~~~l~~~~ 598 (638)
T PRK14101 528 APELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALETDHIEMRESQLSMISRILHLVMIDILAVGVAIRR 598 (638)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEEcCCccchhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999995 8999999999998755221 123344555667777777777776655
No 72
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.59 E-value=1.8e-14 Score=146.93 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=107.4
Q ss_pred CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEE
Q 006659 320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVG 398 (636)
Q Consensus 320 ~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~ 398 (636)
.+|+++|+|+|+.+|.+++..|.++ +..+......+... ....++++|++|++|+||+|++++++++.||++|+++|+
T Consensus 1 ~rI~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~ 79 (268)
T TIGR00393 1 GKLVIVGIGKSGLIGKKIVATFAST-GTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIA 79 (268)
T ss_pred CcEEEEecChHHHHHHHHHHHHHhc-CCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 4799999999999999999998884 66666655555433 234578999999999999999999999999999999999
Q ss_pred EEcCCCCccccccCeeEEcCCCCc---ccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 399 ITNTVGSAIARKTHCGVHINAGAE---IGVASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 399 IT~~~~s~La~~ad~~l~~~~~~e---~~~~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
||++.+|+|+++||+.|.++.+.+ .....+.++.+++.++.+|+..+...++.
T Consensus 80 iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~ 135 (268)
T TIGR00393 80 FTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARNF 135 (268)
T ss_pred EECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999977554 23445677778888877788777755543
No 73
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=99.58 E-value=2e-14 Score=146.25 Aligned_cols=145 Identities=26% Similarity=0.291 Sum_probs=111.3
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHH-HHHHHHHHHHhcCCcEE---------------Eeec---cch---hcccCCC
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNA-ALAARPILEELSDLPVT---------------MEIA---SDL---VDRQAPI 364 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~a-a~~~~~~~~~~~~~~~~---------------~~~~---~e~---~~~~~~~ 364 (636)
+.++.+++.+++.++|+++|+|+|... +..+..++.+++--+.. .... .+. ......+
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 345666778889999999999999875 45666666555321110 0000 011 1122357
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHHH
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAMLA 442 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~ 442 (636)
+++|++|+||+||+|++++++++.||++|+++|+||++++|++++++|+.|.+..++|.....+ ++.+++.+++++|.
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~ 204 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLS 204 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999987777654343 78999999999999
Q ss_pred HHHhcCCCC
Q 006659 443 LAIGGDTIS 451 (636)
Q Consensus 443 ~~~~~~~~~ 451 (636)
..+....++
T Consensus 205 t~~~~~~gk 213 (291)
T TIGR00274 205 TASMIKLGK 213 (291)
T ss_pred HHHHHhcch
Confidence 888766553
No 74
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=99.58 E-value=1.9e-14 Score=133.52 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=87.9
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHHHH------HHHHHhcCCcEEEee-cc--------chh----c---ccCCCCCC
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALAAR------PILEELSDLPVTMEI-AS--------DLV----D---RQAPIYRE 367 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~------~~~~~~~~~~~~~~~-~~--------e~~----~---~~~~~~~~ 367 (636)
+.+++.+.++++|+++|+|+|+..|..+. +.+.+. ++++.... .. +.. + .....+++
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRP-GLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKG 80 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCC-CceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCC
Confidence 46788899999999999999999888874 333332 55555543 11 110 0 01235789
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659 368 DTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 368 dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~ 420 (636)
|++|++|+||+|++++++++.||++|+++|+||++++|||+++||++|.++..
T Consensus 81 D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~~ 133 (154)
T TIGR00441 81 DVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPHF 133 (154)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999988764
No 75
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.57 E-value=9.8e-15 Score=139.39 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=82.6
Q ss_pred cceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhcccc
Q 006659 96 IHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEE 175 (636)
Q Consensus 96 ~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~ 175 (636)
+...++|. +. ...|+... +++++++||+|||+.+|+++|...|+.+.+.+|+|++++++. +||
T Consensus 32 ~~~~~~~~-----~~---~~~~~~~~---~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~----~~G-- 94 (199)
T cd01909 32 GAGTIVHA-----GS---VDVQVARS---ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLT----RLG-- 94 (199)
T ss_pred ceEEEeec-----CC---CceeEeeC---CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHH----HHh--
Confidence 55677762 11 23455543 489999999999999999999988999999999999999998 676
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 176 EGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
.+++++|+|+|||++||.. ++|+++||+ +|||+....
T Consensus 95 ------------~~~l~~L~G~FAfai~D~~--~~L~laRDr~GikPLYy~~~~ 134 (199)
T cd01909 95 ------------LHAFRLAEGDFCFFIEDGN--GRLTLATDHAGSVPVYLVQAG 134 (199)
T ss_pred ------------HHHHHHcCEEEEEEEEcCC--CEEEEEECCCCCcCeEEEECC
Confidence 7899999999999999964 899999999 777776544
No 76
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=99.55 E-value=6.7e-14 Score=134.45 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=86.8
Q ss_pred cchHHHHHHHcCC----CeEEEEeechhHHHHHHHHHHHH---Hh--cCCcEEEeeccchh---------------cccC
Q 006659 307 GGLKDHLKTIRRS----RRIVFIGCGTSYNAALAARPILE---EL--SDLPVTMEIASDLV---------------DRQA 362 (636)
Q Consensus 307 ~~l~~~~~~l~~~----~~I~i~G~G~S~~aa~~~~~~~~---~~--~~~~~~~~~~~e~~---------------~~~~ 362 (636)
+.++++++.|.++ ++|+++|+|+|+..|..++..+. ++ .++++......... ....
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~ 107 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEA 107 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEecCcHHHHhhhhccCCHHHHHHHHHHH
Confidence 4556666665554 99999999999998887764332 11 24554443221110 1123
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659 363 PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINA 419 (636)
Q Consensus 363 ~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~ 419 (636)
..+++|++|++|+||+|++++++++.||++|+++|+||++.+|||+++||++|.++.
T Consensus 108 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 108 VGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 458999999999999999999999999999999999999999999999999999876
No 77
>PRK13937 phosphoheptose isomerase; Provisional
Probab=99.55 E-value=4.5e-14 Score=135.52 Aligned_cols=114 Identities=22% Similarity=0.261 Sum_probs=87.7
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHH-HHHHHHh----cCCcEEEee--cc-------ch----h---cccCCCC
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAA-RPILEEL----SDLPVTMEI--AS-------DL----V---DRQAPIY 365 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~-~~~~~~~----~~~~~~~~~--~~-------e~----~---~~~~~~~ 365 (636)
+..+++++.+.++++|+++|+|+|+..|..+ ..+..++ .++++.... +. +. . ......+
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 3457788889999999999999999877554 2222122 145555432 10 11 0 1122468
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~ 420 (636)
++|++|++|+||+|++++++++.||++|+++|+||++++|||++.||++|.++..
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~ 160 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSD 160 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999988764
No 78
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.53 E-value=9.6e-14 Score=123.15 Aligned_cols=111 Identities=28% Similarity=0.322 Sum_probs=89.2
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEE
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGIT 400 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT 400 (636)
+|+++|+|+|+.+|.++++++.+..++++........ ....+++|++|++|+||+|++++++++.||++|+++|+||
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTL---PAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccC---cCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 5899999999999999999998866777776655332 2356899999999999999999999999999999999999
Q ss_pred cCCCCccccccC----eeEEcCCCCcccccchhhHHHHHHHHHH
Q 006659 401 NTVGSAIARKTH----CGVHINAGAEIGVASTKAYTSQIVVMAM 440 (636)
Q Consensus 401 ~~~~s~La~~ad----~~l~~~~~~e~~~~~t~s~~~~~~~l~l 440 (636)
+ ++++++++| ..+.++.+.. ...||++++..+..
T Consensus 78 ~--~~~l~~~~~~~~~~~~~~p~~~~----~r~s~~~~~~~~~~ 115 (119)
T cd05017 78 S--GGKLLEMAREHGVPVIIIPKGLQ----PRAAFPYLFTALLN 115 (119)
T ss_pred C--CchHHHHHHHcCCcEEECCCCCC----CceeHHHHHHHHHH
Confidence 7 457999999 6677765432 34677766654433
No 79
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.52 E-value=1.8e-13 Score=139.88 Aligned_cols=166 Identities=23% Similarity=0.297 Sum_probs=119.4
Q ss_pred HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCCcE--
Q 006659 273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDLPV-- 349 (636)
Q Consensus 273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~~~-- 349 (636)
.|.+|..+.++++.+.... + .+.++.+++.+++.++|+++|+|+|...| ..+..+...+.-.+-
T Consensus 25 ~~~~~d~~~~~av~~~~~~------------I-~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~ 91 (296)
T PRK12570 25 LINQEDKKVPLAVEKVLPQ------------I-AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMV 91 (296)
T ss_pred HHHHHHHHHHHHHHHhHHH------------H-HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccc
Confidence 4556655555555544322 1 23456777889999999999999998764 444454444321110
Q ss_pred --EE-----------e---eccch-h--cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc
Q 006659 350 --TM-----------E---IASDL-V--DRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK 410 (636)
Q Consensus 350 --~~-----------~---~~~e~-~--~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ 410 (636)
.. . +..++ . .....++++|++|++|+||+|++++++++.|+++|+++|+||++++++|+++
T Consensus 92 ~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~ 171 (296)
T PRK12570 92 IGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKI 171 (296)
T ss_pred eeeeecCchHhhhcccccCCcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHh
Confidence 00 0 00000 0 1223467999999999999999999999999999999999999999999999
Q ss_pred cCeeEEcCCCCcccccch--hhHHHHHHHHHHHHHHHhcCCCC
Q 006659 411 THCGVHINAGAEIGVAST--KAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 411 ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
+|+.|.+..++|....++ ++.+++.+++++|...+....+.
T Consensus 172 aD~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk 214 (296)
T PRK12570 172 ADIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGK 214 (296)
T ss_pred CCEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999998877777654444 78899999999998888766543
No 80
>PRK02947 hypothetical protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=138.07 Aligned_cols=111 Identities=21% Similarity=0.146 Sum_probs=83.8
Q ss_pred hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCC-----cEE--------------EeeccchhcccCCCCCCcE
Q 006659 309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDL-----PVT--------------MEIASDLVDRQAPIYREDT 369 (636)
Q Consensus 309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~-----~~~--------------~~~~~e~~~~~~~~~~~dl 369 (636)
.+.+++.|.++++|+++|.|.|...|..+.+.+.++... +.. .............++++|+
T Consensus 30 a~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 109 (246)
T PRK02947 30 ADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRPGDV 109 (246)
T ss_pred HHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCCCCE
Confidence 345556678899999999999998888776655322111 110 0000111122346789999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCC-----------CccccccCeeEEcCC
Q 006659 370 AVFVSQSGETADTLQALEYASENGALCVGITNTVG-----------SAIARKTHCGVHINA 419 (636)
Q Consensus 370 vI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~-----------s~La~~ad~~l~~~~ 419 (636)
+|+||+||+|.+++++++.|+++|+++|+||++.. ++|++.||++|.+..
T Consensus 110 ~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~~~ 170 (246)
T PRK02947 110 LIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDNGA 170 (246)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEcCC
Confidence 99999999999999999999999999999999984 799999999998765
No 81
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.51 E-value=2.2e-13 Score=126.60 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=116.0
Q ss_pred chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHH-HHHH
Q 006659 308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETAD-TLQA 385 (636)
Q Consensus 308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e-~i~a 385 (636)
.++++++.+.++++|+++|+|.|+..|..++.++.+..++++......++.+.+. .+++++++|++|++|+|.+ ++++
T Consensus 2 ~~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~ 81 (153)
T cd05009 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred hHHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHH
Confidence 3578888999999999999999999999999999998779999999999977654 4789999999999999776 8999
Q ss_pred HHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659 386 LEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI 450 (636)
Q Consensus 386 l~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~ 450 (636)
++.++++|+++++||++.+| ++.+|+.+.++...+. -+....+..+++|+..++..++
T Consensus 82 ~~~~~~~~~~vi~it~~~~s--~~~~d~~i~~~~~~~~-----~~~~~~~~~~q~la~~~a~~~g 139 (153)
T cd05009 82 IKEVKARGAKVIVITDDGDA--KDLADVVIRVPATVEE-----LSPLLYIVPLQLLAYHLAVARG 139 (153)
T ss_pred HHHHHHcCCEEEEEecCCcc--cccCCeEEECCCCchh-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999888 8999999988764432 3455567777888888776544
No 82
>PRK13938 phosphoheptose isomerase; Provisional
Probab=99.50 E-value=2.2e-13 Score=130.53 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=87.3
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH-Hhc----CCcEEEeeccchh----------------cccCCCCCCc
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILE-ELS----DLPVTMEIASDLV----------------DRQAPIYRED 368 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~-~~~----~~~~~~~~~~e~~----------------~~~~~~~~~d 368 (636)
+.+++.+++.++|+++|.|+|+..|..+...|. ++. .++.......+.. ......+++|
T Consensus 36 ~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~~~D 115 (196)
T PRK13938 36 DRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGD 115 (196)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCCCCC
Confidence 445556889999999999999888877776554 110 2334333322211 1134578999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~ 420 (636)
++|++|+||+|++++++++.||++|+++|+||++++|||+++||+.|.++..
T Consensus 116 llI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~ 167 (196)
T PRK13938 116 TLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSR 167 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999988763
No 83
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.49 E-value=9.6e-14 Score=132.98 Aligned_cols=128 Identities=14% Similarity=0.233 Sum_probs=93.2
Q ss_pred CCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhh
Q 006659 117 HPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEG 196 (636)
Q Consensus 117 qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 196 (636)
||-.....+.+++++||+|||+.+|+++|. . .++.+|+|+|+++|+..-+ .|. . ...+++++|+|
T Consensus 63 ~~rl~~~~~~~~~vfnGeIyN~~eLr~~lg---~-~~t~sD~evIl~lY~~~~d-~G~---------y-~~~~~l~~L~G 127 (224)
T cd01910 63 HPRLFAVKDDIFCLFQGHLDNLGSLKQQYG---L-SKTANEAMLVIEAYRTLRD-RGP---------Y-PADQVVKDLEG 127 (224)
T ss_pred cCcEECCCCCEEEEEEeEEcCHHHHHHHhC---C-CCCCcHHHHHHHHHHHHHh-cCC---------c-cHHHHHHhcCe
Confidence 554444467899999999999999999983 2 3678999999999974211 120 0 01469999999
Q ss_pred hhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccccccc-----eeeccCCCeeeCCCcccceeeeecc
Q 006659 197 AYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSILKFD-----NAKGRNGGTYARPASVQRALSILEM 260 (636)
Q Consensus 197 ~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~i~~~~~ 260 (636)
+|||++||.. .+++++|||+ +|||+|..+ +|+-.++-+ ....+||++...+|...+...|.++
T Consensus 128 ~FAFvi~D~~-~~~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~ 204 (224)
T cd01910 128 SFAFVLYDKK-TSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNK 204 (224)
T ss_pred EEEEEEEECC-CCEEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCch
Confidence 9999999987 7999999999 999999763 333333332 3378899995555656666666554
No 84
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=99.45 E-value=1.2e-12 Score=125.41 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=88.0
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH-Hh----cCCcEEEeeccc-hhc---------------ccCCCCCCc
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILE-EL----SDLPVTMEIASD-LVD---------------RQAPIYRED 368 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~-~~----~~~~~~~~~~~e-~~~---------------~~~~~~~~d 368 (636)
+.+++.+.++++|+++|.|+|...|..++..|. ++ .++++....... ... .....+++|
T Consensus 32 ~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~~gD 111 (196)
T PRK10886 32 MTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGD 111 (196)
T ss_pred HHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCCCCC
Confidence 445556688999999999999998888877663 22 255655432111 110 113368999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcCCCC
Q 006659 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK---THCGVHINAGA 421 (636)
Q Consensus 369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~---ad~~l~~~~~~ 421 (636)
++|++|.||+|++++++++.||++|+++|+||+..++||+++ +|..|.+|...
T Consensus 112 vli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~ 167 (196)
T PRK10886 112 VLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHR 167 (196)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCc
Confidence 999999999999999999999999999999999999999997 79999998743
No 85
>PRK13936 phosphoheptose isomerase; Provisional
Probab=99.43 E-value=1.4e-12 Score=126.07 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=88.4
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH-Hhc----CCcEEEee---------ccchhc-------ccCCCC
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILE-ELS----DLPVTMEI---------ASDLVD-------RQAPIY 365 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~-~~~----~~~~~~~~---------~~e~~~-------~~~~~~ 365 (636)
+.++.+++.+.++++|+++|.|.|...|..++..|. +++ ++++.... ..+..+ .....+
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 445677788999999999999999988877766554 221 33332210 011100 023357
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcCCCC
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK---THCGVHINAGA 421 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~---ad~~l~~~~~~ 421 (636)
++|++|+||+||+|++++++++.||++|+++|+||++.+|+|+++ ||+.|.++..+
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 999999999999999999999999999999999999999999995 99999987744
No 86
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=128.13 Aligned_cols=130 Identities=23% Similarity=0.242 Sum_probs=91.5
Q ss_pred CceEEEEEecccccchhhHHHHHHHHHHhccc------cCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchh
Q 006659 1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEY------RGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIES 74 (636)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~------RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~ 74 (636)
||-++|+.... + ..+........+ ..+|||||+.+... ++..||+.-++-
T Consensus 1 MCrlLg~~g~~-----p---~~~~~s~~~~~~~~~~~~~h~DGwGia~y~~~---------------~~~~yk~~~P~~- 56 (252)
T COG0121 1 MCRLLGMHGNP-----P---TDSLFSQSGDPRRAGGTGQHGDGWGIAFYEGR---------------GPRLYKSPLPAW- 56 (252)
T ss_pred CceeeeecCCC-----c---chhhhhhccchhhccCCCCCCCcceEEEEcCC---------------ccEEEeCCCccc-
Confidence 99999998533 1 122222222222 33899999999876 899999866432
Q ss_pred hhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccc
Q 006659 75 LVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFE 153 (636)
Q Consensus 75 l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~ 153 (636)
++. ....+...+++.++|+|+|.||.|..+..|+|||..+ ++..|.|+|||.|.++..+.. .++...
T Consensus 57 ------~d~--~~~~~~~~i~S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~----~~~~~~ 124 (252)
T COG0121 57 ------EDI--ALLVLAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEG----RKLEPV 124 (252)
T ss_pred ------cch--hhhhcccccCccEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccccc----cccCCC
Confidence 221 1122234567889999999999998899999999998 677889999999999876322 233445
Q ss_pred cCCHhhHHHHHHH
Q 006659 154 SETDTEVIPKLAK 166 (636)
Q Consensus 154 ~~tDsE~i~~l~~ 166 (636)
..+|+|.....+.
T Consensus 125 ~~tds~~~~~~~~ 137 (252)
T COG0121 125 GYTDSEAAFCGIT 137 (252)
T ss_pred CcchHHHHHHHhh
Confidence 6788888776553
No 87
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2e-11 Score=109.47 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=87.7
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHH-HHHHHHHhc----CCcEEEee---------ccchhc-------ccCCCCCCc
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALA-ARPILEELS----DLPVTMEI---------ASDLVD-------RQAPIYRED 368 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~-~~~~~~~~~----~~~~~~~~---------~~e~~~-------~~~~~~~~d 368 (636)
..+++.+++.++|+++|.|+|+.-|+- ++.+..|+. .+|..... +.|+.+ ....-.++|
T Consensus 32 ~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GD 111 (176)
T COG0279 32 QLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGD 111 (176)
T ss_pred HHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCC
Confidence 455667889999999999999876643 455555553 35555433 122211 123456999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA 421 (636)
Q Consensus 369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~ 421 (636)
++|+||.||+++.++.+++.||++|++||++|+..+..++.++|+.|.+|...
T Consensus 112 vLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~ 164 (176)
T COG0279 112 VLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTD 164 (176)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCc
Confidence 99999999999999999999999999999999999999999999999998753
No 88
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.33 E-value=7.5e-12 Score=119.98 Aligned_cols=143 Identities=28% Similarity=0.364 Sum_probs=109.4
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHH-HHHHHHHhcCCc----EEE---------------eeccch---hcccCC
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALA-ARPILEELSDLP----VTM---------------EIASDL---VDRQAP 363 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~-~~~~~~~~~~~~----~~~---------------~~~~e~---~~~~~~ 363 (636)
..++.+++.+++..|++.+|.|+|.-.+.. +..+--.+ +++ +-. ++..+. ......
T Consensus 48 ~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTf-gv~~e~ViglIAGG~~A~~~avEGaED~~~~g~~dl~~~~ 126 (298)
T COG2103 48 AAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTF-GVPPELVIGLIAGGEEAILKAVEGAEDDEELGEADLKNIG 126 (298)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCc-CCChhHeeeeecCCHHHHHHhhcCccccHHHHHHHHHHcC
Confidence 346777888999999999999999765532 22211111 111 001 111111 122445
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHH
Q 006659 364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAML 441 (636)
Q Consensus 364 ~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL 441 (636)
++++|+||+|+.||+|+.++.+++.||+.|+.+|+|++|++|++.+.+|+.|..-.|||....+| |+-|+|-++|++|
T Consensus 127 lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGPEvltGSTRlKaGTAQKlvLNMl 206 (298)
T COG2103 127 LTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKAGTAQKLVLNML 206 (298)
T ss_pred CCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCccccccccccccchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999876666 8899999999999
Q ss_pred HHHHhcCCC
Q 006659 442 ALAIGGDTI 450 (636)
Q Consensus 442 ~~~~~~~~~ 450 (636)
....+-..+
T Consensus 207 ST~~Mi~lG 215 (298)
T COG2103 207 STGVMIKLG 215 (298)
T ss_pred HHHHHHHhc
Confidence 887765444
No 89
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.22 E-value=5.5e-11 Score=99.06 Aligned_cols=79 Identities=34% Similarity=0.361 Sum_probs=71.1
Q ss_pred EEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhccc--CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEE
Q 006659 322 IVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ--APIYREDTAVFVSQSGETADTLQALEYASENGALCVGI 399 (636)
Q Consensus 322 I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~I 399 (636)
|+++|+|+|+.+|.++++.+.++.+.++....+.++.+.. ...+++|++|++|+||+|++++++++.+|++|+++|+|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 6899999999999999999999767888877777765443 56789999999999999999999999999999999999
Q ss_pred E
Q 006659 400 T 400 (636)
Q Consensus 400 T 400 (636)
|
T Consensus 81 t 81 (87)
T cd04795 81 T 81 (87)
T ss_pred e
Confidence 9
No 90
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=99.19 E-value=2.5e-10 Score=106.34 Aligned_cols=105 Identities=24% Similarity=0.264 Sum_probs=83.3
Q ss_pred cchHHHHHHHc---CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEeeccchh---cccCCC-CCCcEEEEEcCCC
Q 006659 307 GGLKDHLKTIR---RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEIASDLV---DRQAPI-YREDTAVFVSQSG 377 (636)
Q Consensus 307 ~~l~~~~~~l~---~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~~~e~~---~~~~~~-~~~dlvI~iS~SG 377 (636)
+.++++++.+. .+++|+++|+|+|+..+..+.+++.+.. +.++.+.+..|.. .....+ .++|++|++|.||
T Consensus 5 ~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG 84 (158)
T cd05015 5 ERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSG 84 (158)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCc
Confidence 44566777774 4899999999999998888888888775 4565565554431 122334 4899999999999
Q ss_pred CCHHHHHHHHHHHH---------cCCeEEEEEcCCCCccccccC
Q 006659 378 ETADTLQALEYASE---------NGALCVGITNTVGSAIARKTH 412 (636)
Q Consensus 378 ~t~e~i~al~~ak~---------~g~~vi~IT~~~~s~La~~ad 412 (636)
+|.|++.+++.+++ .+.++|+||+ +++++.+.++
T Consensus 85 ~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~-~~s~l~~~a~ 127 (158)
T cd05015 85 TTLETLANARLAREWLEEAGGDDLAKHFVAITD-NGSGLLKKAG 127 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhccccccceEEEEcC-CChHHHHHcC
Confidence 99999999999999 8999999999 6888887665
No 91
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=99.11 E-value=1.7e-08 Score=116.44 Aligned_cols=286 Identities=14% Similarity=0.127 Sum_probs=147.8
Q ss_pred cchHHHHHHHcC--CCeEEEEeechhHHHHHHHHHHHHHhcCCcEE-Eeeccc---hhcccCCC-CCCcEEEEEcCCCCC
Q 006659 307 GGLKDHLKTIRR--SRRIVFIGCGTSYNAALAARPILEELSDLPVT-MEIASD---LVDRQAPI-YREDTAVFVSQSGET 379 (636)
Q Consensus 307 ~~l~~~~~~l~~--~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~-~~~~~e---~~~~~~~~-~~~dlvI~iS~SG~t 379 (636)
+.++++++.+++ .++|+++|+|+|+..+..+.+.+.+..+.+.. +.+..+ +......+ .+++++|++|.||+|
T Consensus 441 ~~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT 520 (948)
T PRK09533 441 AEYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGT 520 (948)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCC
Confidence 455677777764 89999999999999888888877654444333 222222 11111112 268899999999999
Q ss_pred HHHHHHHHHHH---------HcCCeEEEEEcCCCCccccccC-eeEE-cCCCCcccccchhhHHHHHHHHHHHHHHHhcC
Q 006659 380 ADTLQALEYAS---------ENGALCVGITNTVGSAIARKTH-CGVH-INAGAEIGVASTKAYTSQIVVMAMLALAIGGD 448 (636)
Q Consensus 380 ~e~i~al~~ak---------~~g~~vi~IT~~~~s~La~~ad-~~l~-~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~ 448 (636)
.||+.+.+.++ +.+..+|+||+ ++|+|.+.|+ ..+. +...++ .+...-|..+.+- ++...+...
T Consensus 521 ~ET~sa~~~~~~~l~~~~g~~~~~~~VaVTd-pgs~L~~~A~~~G~~~vf~~~p-~VGGRYSVLSavG---LvPaa~~Gi 595 (948)
T PRK09533 521 LEPNIFKDYFFARVKEVLGAKAGRHFVAVTD-PGSSLEKVAKEDGFRKIFHGDP-DIGGRYSVLSPFG---LVPAAAAGI 595 (948)
T ss_pred HHHHHHHHHHHHHhhhhcccccCCeEEEEeC-CCChHHHHHHHcCCeeEecCCC-CCCcchHHhhhhh---hHHHHHhCc
Confidence 99999999776 34678999999 5899998874 2221 112221 1222222222221 222222211
Q ss_pred CCCcHHHHHHHHHHHhhhHHHHHHHHh-chHHHHHHHHHh-----cCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccc
Q 006659 449 TISTQARREAIIDGLCDLPNKVREVLK-LDQEMKVLAKQL-----IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEG 522 (636)
Q Consensus 449 ~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~a~~l-----~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~ 522 (636)
+ ++++++....+.+.+..-.. .++....++..+ .+...+.+...+.......-..+-++|..+..-.+
T Consensus 596 ---D---i~~lL~GA~~m~~~~~~~~~~~~Npa~~Laaal~~~~~~Gr~~V~i~Ys~~L~~f~~W~~QL~aES~GK~g~G 669 (948)
T PRK09533 596 ---D---VRALLDSALAMVRSCGPSVPPADNPGVQLGLALGVAATQGRDKVTIVASPAIADFGAWAEQLIAESTGKEGKG 669 (948)
T ss_pred ---h---HHHHHHhHHHHHHHhccCCCcccCHHHHHHHHHHHHHhCCCcEEEEEChHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 1 23344444333322211101 122233343322 34445655544443444444444567776554333
Q ss_pred ccccccccccccccc--CCCCeEE-EEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch
Q 006659 523 ILAGEMKHGPLALVD--ENLPILV-IATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL 599 (636)
Q Consensus 523 ~~~~Ef~HGp~~~~~--~~~~vi~-l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~ 599 (636)
. +++ .|-++-... ....+++ +.-++....+.....+.+.+.|..++.|..++ .
T Consensus 670 l-~Pv-~~e~vg~~~~~g~d~~fi~l~~~~~~~~~~~at~~AL~~~g~P~~~I~l~~-------------------~--- 725 (948)
T PRK09533 670 L-IPI-DGEPLGDPAVYGNDRVFVYLRLAGEADAAQDAALAALEAAGHPVVRIVLDS-------------------A--- 725 (948)
T ss_pred c-cCC-cceeecccCCCCCCcEEEEEeccccchHHHHHHHHHHHhcCCCeEEEEeCC-------------------h---
Confidence 2 333 332111111 1122222 22223333344444455556666665554431 1
Q ss_pred hhHHHHH-HHHHHHHHHHHHcCCCCCCCC
Q 006659 600 QPVINIV-PLQLLAYHLTVLRGYNVDQPR 627 (636)
Q Consensus 600 ~~~~~~v-~~q~la~~lA~~~G~~pd~pr 627 (636)
..+-.++ .+++.+++.+...|+||-.-.
T Consensus 726 ~~LG~lf~l~E~atav~G~LlGINPFDQP 754 (948)
T PRK09533 726 EQLGQEFFRWEMATAVAGAVLGINPFDQP 754 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCch
Confidence 1233333 346899999999999996543
No 92
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.04 E-value=9.1e-10 Score=112.98 Aligned_cols=84 Identities=17% Similarity=0.353 Sum_probs=65.3
Q ss_pred CCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhh
Q 006659 116 SHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLE 195 (636)
Q Consensus 116 ~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (636)
.||++.. .+++|.+||+|||. -+..+..|+..++..+...- +. .+ +.+.++.++
T Consensus 62 ~Qpvv~d--~~~vfl~NGeIyn~-----------~~s~~~~d~~~l~~~l~~~~-e~--------~~----Il~~i~~~q 115 (520)
T KOG0573|consen 62 KQPVVED--DRYVFLFNGEIYNG-----------EKSDTLFDTDILAEELSNLK-ES--------GD----ILDIIKSLQ 115 (520)
T ss_pred cCceecc--cceEEEecceeccC-----------CCccccchHHHHHHHHhcCC-cc--------cc----HHHHHHhcc
Confidence 5897754 45999999999994 34456679999988887322 11 23 445668999
Q ss_pred hhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659 196 GAYALIFKSQHYPNELIACKRG---SPLLLGVKD 226 (636)
Q Consensus 196 G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~ 226 (636)
|+|+|++++.. .++||+.||. |+|.+++.|
T Consensus 116 Gp~~~iyY~~~-~~~LyfgRD~~GRrSLly~~~~ 148 (520)
T KOG0573|consen 116 GPWAFIYYDVR-SDKLYFGRDDIGRRSLLYSLDP 148 (520)
T ss_pred CCceEEEEEcc-CcEEEEecccccceeeeEEecc
Confidence 99999999998 7999999999 778888777
No 93
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=99.04 E-value=3.1e-09 Score=97.77 Aligned_cols=124 Identities=23% Similarity=0.231 Sum_probs=87.9
Q ss_pred hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE-e--ec---------cch----------hcccCCCCC
Q 006659 309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM-E--IA---------SDL----------VDRQAPIYR 366 (636)
Q Consensus 309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~-~--~~---------~e~----------~~~~~~~~~ 366 (636)
-+.+++.+.+-++|+++|||.|+.+|. ..+.|.+|+.... . .+ +.+ ......+++
T Consensus 28 a~lVAesi~n~g~i~~FG~GHShm~ae---Ev~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~ 104 (243)
T COG4821 28 AKLVAESIMNDGRIYVFGSGHSHMLAE---EVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRP 104 (243)
T ss_pred HHHHHHHHhcCCEEEEecCchHHHHHH---HHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHhcCCC
Confidence 355667788999999999999996665 4455766643221 1 11 111 111234679
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCC-----------ccccccCeeEEcCC----------CCcccc
Q 006659 367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGS-----------AIARKTHCGVHINA----------GAEIGV 425 (636)
Q Consensus 367 ~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s-----------~La~~ad~~l~~~~----------~~e~~~ 425 (636)
+|++|++|.||.++-.+++++++|++||++|++|+-.-| .|-..+|++|.-.+ +.+..+
T Consensus 105 ~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~ 184 (243)
T COG4821 105 NDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKV 184 (243)
T ss_pred CCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCCcccchheeecCccccc
Confidence 999999999999999999999999999999999997766 56778898876544 223445
Q ss_pred cchhhHHHHH
Q 006659 426 ASTKAYTSQI 435 (636)
Q Consensus 426 ~~t~s~~~~~ 435 (636)
..|.+++.-.
T Consensus 185 ~ptSt~~g~~ 194 (243)
T COG4821 185 GPTSTVSGVT 194 (243)
T ss_pred cCcchhHHHH
Confidence 5565555433
No 94
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=99.00 E-value=2.1e-09 Score=99.37 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC------CCeEEEEeCCc
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDEN------LPILVIATRDA 550 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~------~~vi~l~~~~~ 550 (636)
.+.++++|.++.+. ..++.|.+...++|++++..|.|+++.||....++|+.|+.+..++.. ..++++..++
T Consensus 5 ~n~Ak~LA~~L~~~-~Pvi~~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~- 82 (155)
T PF10432_consen 5 VNPAKRLALELAGR-IPVIYGSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPE- 82 (155)
T ss_dssp HHHHHHHHHHHTTS-EEEEEECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TC-
T ss_pred cCHHHHHHHHHcCC-CcEEEECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCC-
Confidence 57789999999884 444555589999999999999999999999999999999999887654 2345554433
Q ss_pred chHHH---HHHHHH-HHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCCCCC
Q 006659 551 CFSKQ---QSVIQQ-LHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYNVDQ 625 (636)
Q Consensus 551 ~~~~~---~~~~~~-~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~pd~ 625 (636)
...+. .+++++ +++++..++.|...+. ..+..+++++ .+++.|+|||+.+|+||..
T Consensus 83 ~~~~~~~r~~~~~e~~~~~~~~v~~v~~~g~-------------------s~l~rl~~li~l~d~aS~YLA~~~GvDP~~ 143 (155)
T PF10432_consen 83 DHPRVQRRVEITREIAEDRGVRVIEVEAEGG-------------------SPLERLASLIYLGDYASVYLALLYGVDPTP 143 (155)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSEEEEE--SCC-------------------CHHHHHHHHHHHHHHHHHHHHHHCT--SS-
T ss_pred ccccchhhhHHHHHHHHhcCCcEEEEecCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 22222 334444 3667888888876553 3556666666 5699999999999999998
Q ss_pred CCCCcc
Q 006659 626 PRNLAK 631 (636)
Q Consensus 626 pr~l~k 631 (636)
-..+.+
T Consensus 144 v~~I~~ 149 (155)
T PF10432_consen 144 VPIIDE 149 (155)
T ss_dssp TCCCHH
T ss_pred chHHHH
Confidence 877653
No 95
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=98.99 E-value=1.7e-09 Score=97.45 Aligned_cols=127 Identities=19% Similarity=0.287 Sum_probs=104.2
Q ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcC
Q 006659 487 LIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARK 566 (636)
Q Consensus 487 l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g 566 (636)
+.+.++++++|.|.++++|.+++++++++.+......+.+++.|+|...+++++++|+|..+|.+ ..+.+.++.++++|
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~-~~~~~~~~~ak~~g 80 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGET-RELIELLRFAKERG 80 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTT-HHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccc-hhhhhhhHHHHhcC
Confidence 56789999999999999999999999999999999999999999999999999999999976655 45566777899999
Q ss_pred CeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHH
Q 006659 567 GRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLT 616 (636)
Q Consensus 567 ~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA 616 (636)
.++++|++....... ...|..+.+|..++...+......+|++.+.+.
T Consensus 81 ~~vi~iT~~~~~~l~--~~ad~~l~~~~~~~~~~~~~~s~~~~~~~~~~l 128 (131)
T PF01380_consen 81 APVILITSNSESPLA--RLADIVLYIPTGEESQSASTSSFSAQLSLLDAL 128 (131)
T ss_dssp SEEEEEESSTTSHHH--HHSSEEEEEESSCGSSSSHSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCchh--hhCCEEEEecCCCccccchHHHHHHHHHHHHHH
Confidence 999999987765442 135778888865555555666667777666554
No 96
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=98.97 E-value=2.4e-09 Score=97.44 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcC-----CcEEEeecc-------c------h---hcccCCCCCCc
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSD-----LPVTMEIAS-------D------L---VDRQAPIYRED 368 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~-----~~~~~~~~~-------e------~---~~~~~~~~~~d 368 (636)
+.+++.+++-++|+++|+|+|...|..+..-+..... .+....... + | ........++|
T Consensus 26 ~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gD 105 (138)
T PF13580_consen 26 DLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRPGD 105 (138)
T ss_dssp HHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--TT-
T ss_pred HHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCCCC
Confidence 4566678899999999999998776665555544432 222322221 1 1 01122368999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEc
Q 006659 369 TAVFVSQSGETADTLQALEYASENGALCVGITN 401 (636)
Q Consensus 369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~ 401 (636)
++|++|.||+|+.++++++.||++|++||+||+
T Consensus 106 vli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 106 VLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 999999999999999999999999999999995
No 97
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.80 E-value=3.5e-08 Score=112.62 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=112.5
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCC--CCcEEEEEcCCCC-CHHH
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIY--REDTAVFVSQSGE-TADT 382 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~--~~dlvI~iS~SG~-t~e~ 382 (636)
+.++++++.+.++++|+++|.|.++..|..++..|.+++.+++......|+.+.+. .++ +++.+|+++.+|. +..+
T Consensus 484 ~~~~~~a~~l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~VI~i~~~~~~~~~~ 563 (640)
T PTZ00295 484 EQCKRIAEKLKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTPVILIILDDEHKELM 563 (640)
T ss_pred HHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhcCCCCCeEEEEEcCCccHHHH
Confidence 45788899999999999999999999999999999998888888888888876543 345 7899999999988 7889
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659 383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIST 452 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~ 452 (636)
+++++.++++|+++|+||+.. +++...+|.++.++.. +. -+....+..+++|+..++..++.+
T Consensus 564 ~~~~~~lk~rga~vi~It~~~-~~l~~~ad~~i~ip~~-~~-----l~p~~~~ip~Qllay~la~~~G~d 626 (640)
T PTZ00295 564 INAAEQVKARGAYIIVITDDE-DLVKDFADEIILIPSN-GP-----LTALLAVIPLQLLAYEIAILRGIN 626 (640)
T ss_pred HHHHHHHHHcCCEEEEEecCC-ccccccCCeEEEeCCc-cc-----chHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999984 5688899988888753 21 122334556677788777666543
No 98
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=98.76 E-value=1.5e-07 Score=84.62 Aligned_cols=125 Identities=21% Similarity=0.172 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC---CCeEEEEeCCcch--H
Q 006659 479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDEN---LPILVIATRDACF--S 553 (636)
Q Consensus 479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~---~~vi~l~~~~~~~--~ 553 (636)
.++++|..+.+...+++ |++...++|+.++..|.|++|++|....++|..|+.+...+.. ...+++..++... .
T Consensus 2 pAk~LA~~l~g~~Pvi~-g~~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (132)
T cd05637 2 PAKELALELAGRIPIIY-GSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRI 80 (132)
T ss_pred HHHHHHHHhcCCCCEEE-eccchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccCcccccceEEEecCcccccch
Confidence 46788888888655555 5558889999999999999999999999999999999877642 1233323222222 2
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCCC
Q 006659 554 KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYNV 623 (636)
Q Consensus 554 ~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~p 623 (636)
+.+..+..+..+|..+.++...+. ..+..+++++ .+.+.++|||+.+|+||
T Consensus 81 ~~r~~~~~~~~~~~~~~~~~~~g~-------------------s~l~rl~~Li~~~d~aSvyLA~~~GvDP 132 (132)
T cd05637 81 KLRIVITKFEEGGIPYEVIESVGA-------------------SPLARLLSLIYLGDLASVYLALLRGVDP 132 (132)
T ss_pred hHHHHHHHHHhcCCCeEEEecCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 322233335667777777765442 3566777666 46999999999999998
No 99
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=98.56 E-value=3e-05 Score=83.04 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEE-e--eccchhcccC-CCCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTM-E--IASDLVDRQA-PIYREDTAVFVSQSGETADTLQALEYASE 391 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~-~--~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e~i~al~~ak~ 391 (636)
..+.|+++|+|+|+..+..+.+.+.... ..++.+ . ++.++..... ...+++++|++|.||+|.||+.+++.+++
T Consensus 57 ~~~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~~~~~~~~ 136 (410)
T PRK03868 57 SIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETISIFKYLLS 136 (410)
T ss_pred CCCEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999988775433 344442 2 3444433333 23478999999999999999999999988
Q ss_pred cC------Ce-EEEEEcCCCCccccccC
Q 006659 392 NG------AL-CVGITNTVGSAIARKTH 412 (636)
Q Consensus 392 ~g------~~-vi~IT~~~~s~La~~ad 412 (636)
++ ++ +++||+ ++++|.+.|+
T Consensus 137 ~~~~~~~~~~~~v~vTd-~~s~L~~~a~ 163 (410)
T PRK03868 137 HFKLDQELKKNFLFITD-PDSKLEQFAK 163 (410)
T ss_pred HhccccccccEEEEEec-CCchHHHhHH
Confidence 73 44 445565 6889999887
No 100
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=2.9e-05 Score=83.35 Aligned_cols=204 Identities=18% Similarity=0.118 Sum_probs=128.6
Q ss_pred CCeEEEEeechhHHHHHHHHHHHHHhcCC--cEEEe---eccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHHc
Q 006659 319 SRRIVFIGCGTSYNAALAARPILEELSDL--PVTME---IASDLVDRQAPIY-REDTAVFVSQSGETADTLQALEYASEN 392 (636)
Q Consensus 319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~--~~~~~---~~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~~ 392 (636)
.+.|+.+|+|+|+..+.++...+.....- .+... ++.+.......++ +.++++++|.||+|.||+...+.+++.
T Consensus 79 ~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~ 158 (446)
T COG0166 79 ITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKW 158 (446)
T ss_pred cceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 88999999999999999998888877542 22222 2222222223344 457999999999999999999999987
Q ss_pred C-------CeEEEEEcCCCCccccccC----eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006659 393 G-------ALCVGITNTVGSAIARKTH----CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIID 461 (636)
Q Consensus 393 g-------~~vi~IT~~~~s~La~~ad----~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~ 461 (636)
. .+..++|+...+.+++.++ .++.++.+ +...-|..+.+. ++.+.++... +.++++
T Consensus 159 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~----VGGRfS~~SaVG---~l~~a~~~~~------~~~lL~ 225 (446)
T COG0166 159 LEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDW----VGGRYSVLSAVG---LLPLALGGID------FKELLE 225 (446)
T ss_pred HHhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCC----CCCccchhHHHH---HHHHHHhccc------HHHHHH
Confidence 6 5677888888888886664 45666542 222333333333 3444444332 344555
Q ss_pred HHhhhHHHHHHH-Hhc-hHHHHHHHHH----hcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccc--cccc
Q 006659 462 GLCDLPNKVREV-LKL-DQEMKVLAKQ----LIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMK--HGPL 533 (636)
Q Consensus 462 ~l~~l~~~~~~~-~~~-~~~~~~~a~~----l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~--HGp~ 533 (636)
....+.+.+... ++. .+....++.. +.+...-.++...+......+.-..+.+-+.-.+.....+++. +|++
T Consensus 226 Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~~~~~~~~~~~~t~~~ 305 (446)
T COG0166 226 GAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKSVKGIGPEVNFHTDPI 305 (446)
T ss_pred HHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCCccCcCCccccCCCce
Confidence 544444444431 222 2222333332 2456778888998888888887777777776566555555555 6777
Q ss_pred cc
Q 006659 534 AL 535 (636)
Q Consensus 534 ~~ 535 (636)
.+
T Consensus 306 ~~ 307 (446)
T COG0166 306 SW 307 (446)
T ss_pred ee
Confidence 65
No 101
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=98.31 E-value=8.4e-06 Score=73.82 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHH
Q 006659 480 MKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVI 559 (636)
Q Consensus 480 ~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~ 559 (636)
++++++.+...++++++|+|.++.+|.+++.++.+. ..++......+..|+....+++++.+|++...|.+ ..+.+.+
T Consensus 3 i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~-~~~~~~~ 80 (139)
T cd05013 3 LEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRL-GKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-KETVEAA 80 (139)
T ss_pred HHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHc-CCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCC-HHHHHHH
Confidence 456777778889999999999999999999999876 55777777788888888888888888888876665 4567788
Q ss_pred HHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659 560 QQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQV 595 (636)
Q Consensus 560 ~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~ 595 (636)
+.++++|.++++|+......... -.|..+.+|..
T Consensus 81 ~~a~~~g~~iv~iT~~~~~~l~~--~~d~~i~~~~~ 114 (139)
T cd05013 81 EIAKERGAKVIAITDSANSPLAK--LADIVLLVSSE 114 (139)
T ss_pred HHHHHcCCeEEEEcCCCCChhHH--hcCEEEEcCCC
Confidence 89999999999999987654421 35678888753
No 102
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=98.29 E-value=0.00013 Score=78.68 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=73.7
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhc----------CCcEEEeeccc---hhcccCCCC-CCcEEEE
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELS----------DLPVTMEIASD---LVDRQAPIY-REDTAVF 372 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~----------~~~~~~~~~~e---~~~~~~~~~-~~dlvI~ 372 (636)
+.++++.+.++..+.|+++|+|+|+..+..+...+.... +..+.+.+..+ +......++ +++++|+
T Consensus 59 ~~~~~~~~~~~~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iv 138 (446)
T PRK00973 59 DSYEELKEWSKNFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNV 138 (446)
T ss_pred HHHHHHHHHhhcCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEE
Confidence 355555555556799999999999998888877665421 11233322222 211122234 6789999
Q ss_pred EcCCCCCHHHHHHHHHHHH--------cCCeEEEEEcCCCCccccccC
Q 006659 373 VSQSGETADTLQALEYASE--------NGALCVGITNTVGSAIARKTH 412 (636)
Q Consensus 373 iS~SG~t~e~i~al~~ak~--------~g~~vi~IT~~~~s~La~~ad 412 (636)
+|.||+|.||+.+.+.+++ .+..+|+||+..+++|.+.|+
T Consensus 139 iSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~ 186 (446)
T PRK00973 139 ISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAE 186 (446)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHH
Confidence 9999999999999998876 456899999976777888776
No 103
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=98.26 E-value=0.00026 Score=77.46 Aligned_cols=94 Identities=23% Similarity=0.267 Sum_probs=67.4
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccc---hhcccCCC---CCCcEEEEEcCCCCCHHHHHHHHHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASD---LVDRQAPI---YREDTAVFVSQSGETADTLQALEYAS 390 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e---~~~~~~~~---~~~dlvI~iS~SG~t~e~i~al~~ak 390 (636)
..+.|+++|+|+|+.....+...+.... ...+.+.+..+ +......+ .+++++|++|.||.|.||+..++.++
T Consensus 113 ~~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSGtT~ET~~n~~~~~ 192 (528)
T PRK14096 113 KFTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSGGTPETRNGMLEAK 192 (528)
T ss_pred CCCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999988888877776532 23343333222 22222223 36889999999999999999888655
Q ss_pred H----cC----CeEEEEEcCCCCccccccC
Q 006659 391 E----NG----ALCVGITNTVGSAIARKTH 412 (636)
Q Consensus 391 ~----~g----~~vi~IT~~~~s~La~~ad 412 (636)
+ +| ..+|+||+ .+++|.+.++
T Consensus 193 ~~l~~~G~~~~~h~VAVT~-~~s~L~~~A~ 221 (528)
T PRK14096 193 AAYEAAGLDFASHAVAITM-KGSKLDQLAQ 221 (528)
T ss_pred HHHHhhcccccceEEEEEC-CCcHHhhhcc
Confidence 4 34 57999998 6889999883
No 104
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=98.17 E-value=7.2e-05 Score=71.31 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ 556 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~ 556 (636)
.+.++++++.+...++++++|.|.++.+|...+.++... ++++.... +. ....+++++.+|++...|.+ ..+.
T Consensus 20 ~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~--~~---~~~~~~~~D~vI~iS~sG~t-~~~i 92 (179)
T cd05005 20 EEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLNVYVVG--ET---TTPAIGPGDLLIAISGSGET-SSVV 92 (179)
T ss_pred HHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhC-CCeEEEeC--CC---CCCCCCCCCEEEEEcCCCCc-HHHH
Confidence 466788888898999999999999999999999998754 44554432 21 12346778888888766654 4556
Q ss_pred HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch--------hh------HHHHHHHHHHHHHHHHHcCCC
Q 006659 557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL--------QP------VINIVPLQLLAYHLTVLRGYN 622 (636)
Q Consensus 557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~~------~~~~v~~q~la~~lA~~~G~~ 622 (636)
++++.++++|.+++.|++........ .+|..+.+|...... .+ +..++.++.+...++...+..
T Consensus 93 ~~~~~ak~~g~~iI~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ld~l~~~~~~~~~~~ 170 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSPLAK--LADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELGVS 170 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCchHH--hCCEEEEeCCcccccCCCCccccccCccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 78889999999999999877654431 356778887532221 12 234456799999988888876
Q ss_pred CC
Q 006659 623 VD 624 (636)
Q Consensus 623 pd 624 (636)
+.
T Consensus 171 ~~ 172 (179)
T cd05005 171 EE 172 (179)
T ss_pred HH
Confidence 54
No 105
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.15 E-value=2e-05 Score=70.41 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=81.0
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659 492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV 571 (636)
Q Consensus 492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v 571 (636)
+++++|.|.++.+|.+++.++....+.++..+...++.|.+.. +++++.+|++...|.+.+ +.+.++.++++|.+++.
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~I~iS~sG~t~e-~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPL-LDEDTLVIAISQSGETAD-TLAALRLAKEKGAKTVA 78 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCC-CCCCcEEEEEeCCcCCHH-HHHHHHHHHHcCCeEEE
Confidence 4789999999999999999999999888888887788876654 778888888887776654 77889999999999999
Q ss_pred EecCCCCcCCCCCCcceEEEcCC
Q 006659 572 MCSKGDAASIFPGGSCRVIEVPQ 594 (636)
Q Consensus 572 i~~~~~~~~~~~~~~~~~~~~p~ 594 (636)
|++..+..+.. .+|..+.+|.
T Consensus 79 iT~~~~s~la~--~ad~~l~~~~ 99 (126)
T cd05008 79 ITNVVGSTLAR--EADYVLYLRA 99 (126)
T ss_pred EECCCCChHHH--hCCEEEEecC
Confidence 99987654432 3567787775
No 106
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.15 E-value=1.8e-05 Score=70.11 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=89.5
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659 492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV 571 (636)
Q Consensus 492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v 571 (636)
+++++|.|.++.+|.+++.++.+...+++..+...++.|.....+++++.+|++...|.+ ..+.+.++.++++|.+++.
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t-~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNT-KETVAAAKFAKEKGATVIG 79 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCC-hHHHHHHHHHHHcCCeEEE
Confidence 478999999999999999999998888999888889998877778888888888876654 5567788899999999999
Q ss_pred EecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHH
Q 006659 572 MCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPL 608 (636)
Q Consensus 572 i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~ 608 (636)
|++..+..+.. .+|..+.+|...+...++-+++.+
T Consensus 80 iT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~~ 114 (120)
T cd05710 80 LTDDEDSPLAK--LADYVIVYGFEIDAVEEKYLLLYM 114 (120)
T ss_pred EECCCCCcHHH--hCCEEEEccCCcCccchHHHHHHH
Confidence 99987654421 357778888543444455444443
No 107
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.11 E-value=5.7e-05 Score=79.63 Aligned_cols=131 Identities=8% Similarity=0.039 Sum_probs=104.2
Q ss_pred HHHhhhHHHHHHHHhc-hHHHHHHHHHhc--CCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 006659 461 DGLCDLPNKVREVLKL-DQEMKVLAKQLI--AEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD 537 (636)
Q Consensus 461 ~~l~~l~~~~~~~~~~-~~~~~~~a~~l~--~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~ 537 (636)
.+.++-|+.+++.++. .+..+++++.+. +.++++|+|+|.++-.|..++..+....++++..+...+|.+......+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~ 91 (340)
T PRK11382 12 LVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLD 91 (340)
T ss_pred HHHhhchHHHHHHHHhhhHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCCcCCC
Confidence 3456677777777765 566777777775 4789999999999999999999998989999999999999986665578
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCC
Q 006659 538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQ 594 (636)
Q Consensus 538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~ 594 (636)
+++.+|++...|++.+ +.+.++.++++|.+++.||+..+..+. ..+|..+.++.
T Consensus 92 ~~~lvI~iS~SGeT~e-~i~al~~ak~~Ga~~I~IT~~~~S~L~--~~ad~~l~~~a 145 (340)
T PRK11382 92 DRCAVIGVSDYGKTEE-VIKALELGRACGALTAAFTKRADSPIT--SAAEFSIDYQA 145 (340)
T ss_pred CCCEEEEEcCCCCCHH-HHHHHHHHHHcCCeEEEEECCCCChHH--HhCCEEEEeCC
Confidence 8888888877776654 677888999999999999998766542 23567777773
No 108
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.06 E-value=0.00018 Score=75.42 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCC-CeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659 478 QEMKVLAKQLIAE-QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ 556 (636)
Q Consensus 478 ~~~~~~a~~l~~~-~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~ 556 (636)
+...+.++.+... ++++++|.|.++.+|.+++.||.. ...++..+...++.|.....++++..+|++...|.+ ..+.
T Consensus 29 ~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-~~~~ 106 (321)
T PRK11543 29 DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA-KELD 106 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHc-CCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCc-HHHH
Confidence 3456666666565 589999999999999999999986 666777776667777777778889999998877765 4567
Q ss_pred HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-------chh-hHHHHHHHHHHHHHHHHHcCCCC
Q 006659 557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-------CLQ-PVINIVPLQLLAYHLTVLRGYNV 623 (636)
Q Consensus 557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~-~~~~~v~~q~la~~lA~~~G~~p 623 (636)
+.++.++++|.+++.||......+.. -+|..+.++...+ .++ .+...+..+.+...+...+|.++
T Consensus 107 ~~~~~ak~~g~~vI~iT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~dsL~~~~l~~~g~~~ 179 (321)
T PRK11543 107 LIIPRLEDKSIALLAMTGKPTSPLGL--AAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNE 179 (321)
T ss_pred HHHHHHHHcCCeEEEEECCCCChhHH--hCCEEEEcCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 88999999999999999987665432 3567776663211 122 22234456778888888889888
No 109
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.04 E-value=4.9e-05 Score=86.91 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=106.8
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHH
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQ 384 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~ 384 (636)
+.++++++.+..+++++++|.|.++.+|..++-.+..+..+++..+...||.|-+. .++++..||++...+.+ ..+..
T Consensus 514 ~~~~~~a~~l~~~~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~ 593 (670)
T PTZ00394 514 DPVKALAARLKESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKS 593 (670)
T ss_pred HHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHH
Confidence 34677888889999999999999999999999999998889999999999988754 46778888888766665 45778
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
+++..+++|+++++||+..+..+....+..+.++...+. ... ...+..+.+|+..++..++.
T Consensus 594 ~~~evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~~----l~p-ll~~iplQllAy~~A~~rG~ 655 (670)
T PTZ00394 594 AVQQVKARGGAVVVFATEVDAELKAAASEIVLVPKTVDC----LQC-VVNVIPFQLLAYYMALLRGN 655 (670)
T ss_pred HHHHHHHcCCeEEEEECCCcchhcccCCcEEECCCCchh----HhH-HHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999986544555666777777753321 122 22344557778777766654
No 110
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.95 E-value=1.9e-05 Score=65.40 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=71.0
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccc-cccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659 493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGP-LALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV 571 (636)
Q Consensus 493 ~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp-~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v 571 (636)
++++|.|.++.+|.+++.++.+..+.++......++.|++ ....++++.++++...+.+ ..+.++++.++++|.++++
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t-~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT-EELLAALEIAKELGIPVIA 79 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCC-HHHHHHHHHHHHcCCeEEE
Confidence 4789999999999999999999988999999999999998 7778889999999876654 5577889999999999999
Q ss_pred Ee
Q 006659 572 MC 573 (636)
Q Consensus 572 i~ 573 (636)
|+
T Consensus 80 it 81 (87)
T cd04795 80 IT 81 (87)
T ss_pred Ee
Confidence 87
No 111
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=97.95 E-value=0.0004 Score=66.18 Aligned_cols=138 Identities=14% Similarity=0.201 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ 556 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~ 556 (636)
.+.++++++.+...++++++|.|.++.+|.+.+.|+...- ..+... .+. | ...+++++.+|++.-.|.+ ..+.
T Consensus 17 ~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~--~~~-~--~~~~~~~Dv~I~iS~sG~t-~~~i 89 (179)
T TIGR03127 17 EEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLG-FNVYVV--GET-T--TPSIKKGDLLIAISGSGET-ESLV 89 (179)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCC-CeEEEe--CCc-c--cCCCCCCCEEEEEeCCCCc-HHHH
Confidence 4567788888888999999999999999999999987643 344333 222 1 2356788888888766654 5566
Q ss_pred HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch--------hhH------HHHHHHHHHHHHHHHHcCCC
Q 006659 557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL--------QPV------INIVPLQLLAYHLTVLRGYN 622 (636)
Q Consensus 557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~~~------~~~v~~q~la~~lA~~~G~~ 622 (636)
+.++.++++|.+++.||......+.. .+|..+.+|...+.. .|+ ..++.++.+...+....+.+
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l~~~~~~~~~~~ 167 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPESTLGK--LADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKGLD 167 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCchHH--hCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 78888999999999999877654432 356777777432221 121 23456788888888887776
Q ss_pred C
Q 006659 623 V 623 (636)
Q Consensus 623 p 623 (636)
.
T Consensus 168 ~ 168 (179)
T TIGR03127 168 E 168 (179)
T ss_pred H
Confidence 5
No 112
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.91 E-value=0.00063 Score=71.47 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCC-CeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659 478 QEMKVLAKQLIAE-QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ 556 (636)
Q Consensus 478 ~~~~~~a~~l~~~-~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~ 556 (636)
...+++++.+... ++++++|.|.++.+|.+++.||.. .++++......++.|-....++++..+|++...|.+ ..+.
T Consensus 34 ~~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t-~~~~ 111 (326)
T PRK10892 34 QDFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES-SEIL 111 (326)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhc-CCceeEEeChHHhhccccccCCCCCEEEEEeCCCCC-HHHH
Confidence 3577778777666 699999999999999999999986 666776665555656555567788888888766654 5567
Q ss_pred HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-------chhhH-HHHHHHHHHHHHHHHHcCCCC
Q 006659 557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-------CLQPV-INIVPLQLLAYHLTVLRGYNV 623 (636)
Q Consensus 557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~-~~~v~~q~la~~lA~~~G~~p 623 (636)
+.++.++++|.+++.|++.....+.. .+|..+.++...+ .+..+ ......+.+...+...+|..-
T Consensus 112 ~~~~~ak~~g~~vi~iT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g~~~ 184 (326)
T PRK10892 112 ALIPVLKRLHVPLICITGRPESSMAR--AADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTA 184 (326)
T ss_pred HHHHHHHHCCCcEEEEECCCCCcccc--cCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 78899999999999999988765532 3567777662221 12222 234445777777888888776
No 113
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=97.86 E-value=5.3e-05 Score=71.74 Aligned_cols=113 Identities=15% Similarity=0.251 Sum_probs=80.0
Q ss_pred CCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhh
Q 006659 116 SHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLE 195 (636)
Q Consensus 116 ~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (636)
-||-.+...+++.=++-|.|.|...|++++.. -++.++.-++...|...-++ | +-+. -.+++.|+
T Consensus 66 l~pR~F~~~DdIfCiF~G~L~Nl~~L~qqYGL----sK~~nEa~~vIEAYrtLRDR-g----PyPa------dqvv~~L~ 130 (228)
T PF12481_consen 66 LHPRLFAGVDDIFCIFLGSLENLCSLRQQYGL----SKGANEAMFVIEAYRTLRDR-G----PYPA------DQVVKDLE 130 (228)
T ss_pred cccccccccCCEEEEEecchhhHHHHHHHhCc----CcCcchhhhHHHHHHHhhcc-C----CCCh------HHHHHhcc
Confidence 36644444567888899999999999998632 25566777777777544333 1 1111 45789999
Q ss_pred hhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccccccc------eeeccCCCe
Q 006659 196 GAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSILKFD------NAKGRNGGT 244 (636)
Q Consensus 196 G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~~~~~------~~~~~~g~~ 244 (636)
|.|+|+++|.. .+.+|+|||. -|||+|+.. .|++..++. ++..++|-+
T Consensus 131 G~FaFVlyD~~-~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~ 192 (228)
T PF12481_consen 131 GSFAFVLYDSK-TGTVFVARDSDGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCF 192 (228)
T ss_pred CceEEEEEecC-CCcEEEeecCCCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceE
Confidence 99999999998 7999999987 799999987 344433332 125667777
No 114
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.86 E-value=0.00015 Score=79.34 Aligned_cols=95 Identities=23% Similarity=0.230 Sum_probs=61.8
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEe---eccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHHH----
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTME---IASDLVDRQAPIY-REDTAVFVSQSGETADTLQALE---- 387 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~---~~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~---- 387 (636)
..+.|+++|+|+|+.....+...+..+. +..+.+. ++..+......++ +++++|++|.||.|.||+..++
T Consensus 150 ~~~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSGtT~ETl~n~~~~r~ 229 (533)
T PRK14095 150 KFTTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRD 229 (533)
T ss_pred ccceEEEEecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999855555444444332 2233322 2222222222223 6789999999999999999844
Q ss_pred HHHHcC----CeEEEEEcCCCCccccccCe
Q 006659 388 YASENG----ALCVGITNTVGSAIARKTHC 413 (636)
Q Consensus 388 ~ak~~g----~~vi~IT~~~~s~La~~ad~ 413 (636)
.+++.| ..+|+||. ..+++++..++
T Consensus 230 wl~~~G~~~~~h~VaVT~-~~s~l~~~~~~ 258 (533)
T PRK14095 230 ALKKAGLDYKKHFIAVTS-EGSPMDDESGY 258 (533)
T ss_pred HHHHcCccccceEEEEEC-CchHHHhhcCc
Confidence 444455 57999998 57788876665
No 115
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=97.86 E-value=0.00033 Score=72.04 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ 556 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~ 556 (636)
.+.+.++++.+...++++++|.|.++.+|.+++.++.. ..+++..+.-..+..-.....+++..+|+|...|.+ ..+.
T Consensus 115 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t-~~~~ 192 (284)
T PRK11302 115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFR-FNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRT-KSLV 192 (284)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHh-cCCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCC-HHHH
Confidence 35567788888889999999999999999999888876 455655543211111112345788888888776665 4577
Q ss_pred HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc--chhhH----HHHHHHHHHHHHHHHHcC
Q 006659 557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED--CLQPV----INIVPLQLLAYHLTVLRG 620 (636)
Q Consensus 557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~----~~~v~~q~la~~lA~~~G 620 (636)
++++.++++|.++++||+. ...+. ..+|..+.+|...+ ...++ ..+..++.|...+...+|
T Consensus 193 ~~~~~ak~~g~~vI~IT~~-~s~l~--~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~l~~~~~ 259 (284)
T PRK11302 193 ELAQLARENGATVIAITSA-GSPLA--REATLALTLDVPEDTDIYMPMVSRIAQLTVIDVLATGFTLRRG 259 (284)
T ss_pred HHHHHHHHcCCeEEEECCC-CChhH--HhCCEEEecCCCccchhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999974 33332 23567777763221 11222 233355777777776665
No 116
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=97.84 E-value=0.00038 Score=71.88 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHH
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQS 557 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~ 557 (636)
+.+.++++.+..++++++.|.|.++.+|.+.+.++... ++++..+.-.+........+++++.+|+|...|.+. .+.+
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~-~~~~ 205 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRI-GVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTS-DVIE 205 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhC-CCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH-HHHH
Confidence 56777888889999999999999999999999998864 556655533333222334567888888888766654 4778
Q ss_pred HHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch--h----hHHHHHHHHHHHHHHHHHc
Q 006659 558 VIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL--Q----PVINIVPLQLLAYHLTVLR 619 (636)
Q Consensus 558 ~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~--~----~~~~~v~~q~la~~lA~~~ 619 (636)
+++.++++|.++++||......... .+|..+.+|.....+ . .+..+..++.|...++..+
T Consensus 206 ~~~~ak~~g~~ii~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~s~~~~~~i~d~L~~~l~~~~ 271 (292)
T PRK11337 206 AVELAKKNGAKIICITNSYHSPIAK--LADYVICSTAQGSPLLGENAAARIAQLNILDAFFVSVAQLN 271 (292)
T ss_pred HHHHHHHCCCeEEEEeCCCCChhHH--hCCEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887654421 357778887432211 1 2223445566666666554
No 117
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=97.81 E-value=0.00028 Score=80.61 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=105.8
Q ss_pred chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHHH
Q 006659 308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQA 385 (636)
Q Consensus 308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~a 385 (636)
.++++++.+...++++++|.|.++.+|..++-.+..+..+++..+...||.|.+. .+++++.+|++...|.+ ..+.++
T Consensus 452 ~~~~~a~~l~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~ 531 (607)
T TIGR01135 452 SIAELAERYADKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSN 531 (607)
T ss_pred HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCEEEEEeCchHHHHHHHH
Confidence 4677778888999999999999999999999999999899999999999988754 46778888888777764 556788
Q ss_pred HHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 386 LEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 386 l~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
++.++++|++++.|++.........+|..+.++...+. -+....+..+.+|+..++..++.
T Consensus 532 ~~~~~~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~~p~Qlla~~~A~~~G~ 592 (607)
T TIGR01135 532 VEEVKARGARVIVFADEDDEFLESVADDVIKLPEVEEL-----LAPIVYTVPLQLLAYHIALAKGT 592 (607)
T ss_pred HHHHHHcCCeEEEEECCCcccccccCCcEEECCCCCcc-----chHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999986432233456677777653221 12223356667788888776654
No 118
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=97.80 E-value=0.00049 Score=70.54 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ 556 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~ 556 (636)
.+...+.++.+..+++++++|.|.+..+|.+++.||..+-. ++..++-..+.-.....+++++.+|+|.-.|.+ ..+.
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~-~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t-~e~i 194 (281)
T COG1737 117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGL-NVVALSDTHGQLMQLALLTPGDVVIAISFSGYT-REIV 194 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCC-ceeEecchHHHHHHHHhCCCCCEEEEEeCCCCc-HHHH
Confidence 45677788889999999999999999999999999998876 333333332222344567889999999876654 4566
Q ss_pred HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-ch-----hhHHHHHHHHHHHHHHHHHcCC
Q 006659 557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-CL-----QPVINIVPLQLLAYHLTVLRGY 621 (636)
Q Consensus 557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-~~-----~~~~~~v~~q~la~~lA~~~G~ 621 (636)
+.++.++++|++++.||+....++. ..+|..+.+|..++ .+ +-+..+..++.|...++..++.
T Consensus 195 ~~a~~ak~~ga~vIaiT~~~~spla--~~Ad~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~~~ 263 (281)
T COG1737 195 EAAELAKERGAKVIAITDSADSPLA--KLADIVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRRGE 263 (281)
T ss_pred HHHHHHHHCCCcEEEEcCCCCCchh--hhhceEEeccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 7888999999999999998665543 23577788764322 22 2334555668888888776653
No 119
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.00026 Score=77.80 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=112.3
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCC-CHHHHH
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGE-TADTLQ 384 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~-t~e~i~ 384 (636)
+.+.++++.+.+.++++++|.|..+..|+.++-.+....-+++..+...|+.|.+- .++++..||++.-.+. -..+..
T Consensus 443 ~~i~~~a~~l~~~~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~~s 522 (597)
T COG0449 443 EKIKELAKRLADAKDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKS 522 (597)
T ss_pred HHHHHHHHHhcccCCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcCCCcEEEEeCcchHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999988764 5689999999998885 678999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIST 452 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~ 452 (636)
.++..+.+|++++.|+.... .+...|..+.++...|. -+-...+.-+++|+..++..++-+
T Consensus 523 ni~Ev~aRg~~~i~i~~~~~--~~~~~~~~i~~p~~~e~-----laPi~~~iPlQLLAY~iA~~kG~d 583 (597)
T COG0449 523 NIQEVRARGGKIIVIADEGD--VAEDGDDLILLPEVDEL-----LAPLLYTIPLQLLAYHIALAKGID 583 (597)
T ss_pred HHHHHHcCCCeEEEEecCCc--ccccCceEEecCCCcch-----hhhHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999755 55566777776664443 122233444788888888766643
No 120
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=97.76 E-value=0.00045 Score=78.85 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=104.0
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHH
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQ 384 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~ 384 (636)
+.++++++.+...++++++|.|.++.+|..++-.+.....+++..+...||.|.+. .+++++.+|++.-.|.+ ..+.+
T Consensus 449 ~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~ 528 (604)
T PRK00331 449 EQIEELAEDFADARNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKS 528 (604)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCCceEEEEEcCchHHHHHHH
Confidence 34677788888999999999999999999999999999899999999999988753 46778888888777764 44567
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
+++..+++|.+++.||+... .+....|..+.++..++ .-+....+..+.+|+..++..++.
T Consensus 529 ~~~~~~~~g~~v~~I~~~~~-~~~~~~~~~~~~~~~~~-----~~~pl~~~ip~Qlla~~~A~~~G~ 589 (604)
T PRK00331 529 NIQEVKARGARVIVIADEGD-EVAEEADDVIEVPEVHE-----LLAPLLYVVPLQLLAYHVALARGT 589 (604)
T ss_pred HHHHHHhCCCEEEEEEcCCc-cccccCCceEECCCCcc-----chhHHHHHHHHHHHHHHHHHHcCC
Confidence 88899999999999998543 33345566677664322 122223344567788877766554
No 121
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.75 E-value=0.00053 Score=61.27 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=76.7
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659 492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV 571 (636)
Q Consensus 492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v 571 (636)
+++++|.|.++.+|.+.+.++.. ...++..+...++..-....+++++.+|++.-.|.+ ..+.+.++.++++|.+++.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS-TGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET-DELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc-CCCceEEcccchhhccccCcCCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEE
Confidence 68999999999999999999854 577777776666555555667888888888766654 5566788889999999999
Q ss_pred EecCCCCcCCCCCCcceEEEcCC
Q 006659 572 MCSKGDAASIFPGGSCRVIEVPQ 594 (636)
Q Consensus 572 i~~~~~~~~~~~~~~~~~~~~p~ 594 (636)
|+...+..+.. .+|..+.+|.
T Consensus 80 iT~~~~s~la~--~ad~~l~~~~ 100 (128)
T cd05014 80 ITGNPNSTLAK--LSDVVLDLPV 100 (128)
T ss_pred EeCCCCCchhh--hCCEEEECCC
Confidence 99987765532 3577788874
No 122
>PRK13937 phosphoheptose isomerase; Provisional
Probab=97.71 E-value=0.0019 Score=61.99 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhcccccccccc---------ccc-cccc----c-ccc
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILA---------GEM-KHGP----L-ALV 536 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~---------~Ef-~HGp----~-~~~ 536 (636)
++.++++++.+...++++++|.|.++.+|...+..+. +-..+++..+.. .++ .+.. . ...
T Consensus 25 ~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (188)
T PRK13937 25 AKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG 104 (188)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence 4566778888899999999999999998877654333 223454444320 010 0101 1 135
Q ss_pred cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC
Q 006659 537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE 596 (636)
Q Consensus 537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~ 596 (636)
++++.+|++...|.+ ..+.+.++.++++|.+++.||+.....+. ..+|..+.+|..+
T Consensus 105 ~~~Dl~i~iS~sG~t-~~~~~~~~~ak~~g~~~I~iT~~~~s~L~--~~ad~~l~~~~~e 161 (188)
T PRK13937 105 RPGDVLIGISTSGNS-PNVLAALEKARELGMKTIGLTGRDGGKMK--ELCDHLLIVPSDD 161 (188)
T ss_pred CCCCEEEEEeCCCCc-HHHHHHHHHHHHCCCeEEEEeCCCCChhH--HhCCEEEEeCCCC
Confidence 678888888876655 55677889999999999999997765442 1357788888643
No 123
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=97.70 E-value=0.00073 Score=69.25 Aligned_cols=137 Identities=11% Similarity=0.060 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccc---ccccCCCCeEEEEeCCcchH
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPL---ALVDENLPILVIATRDACFS 553 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~---~~~~~~~~vi~l~~~~~~~~ 553 (636)
.+.+.++++.+...++++++|.|.++.+|.+.+.+|.-. ++++... .+ .|... ..+++++.+|+|...+. ..
T Consensus 115 ~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~-g~~~~~~--~d-~~~~~~~~~~~~~~Dv~I~iS~sg~-~~ 189 (278)
T PRK11557 115 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKI-GINAVAE--RD-MHALLATVQALSPDDLLLAISYSGE-RR 189 (278)
T ss_pred HHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhC-CCeEEEc--CC-hHHHHHHHHhCCCCCEEEEEcCCCC-CH
Confidence 356777888889999999999999999999999998864 3444332 22 23322 24677887777766554 45
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-----chhhHH-HHHHHHHHHHHHHHHcC
Q 006659 554 KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-----CLQPVI-NIVPLQLLAYHLTVLRG 620 (636)
Q Consensus 554 ~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~-~~v~~q~la~~lA~~~G 620 (636)
.+.+.++.++++|.++++||......... .+|..+..+...+ .+.... .+..+++|...++...+
T Consensus 190 ~~~~~~~~ak~~ga~iI~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~~~~~~~ 260 (278)
T PRK11557 190 ELNLAADEALRVGAKVLAITGFTPNALQQ--RASHCLYTIAEEQATRSAAISSTHAQGMLTDLLFMALIQQDL 260 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCchHH--hCCEEEEeCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56778889999999999999976554422 3466666543211 233333 33345777777666554
No 124
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=97.68 E-value=0.002 Score=61.94 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccccc--------------cccccccc-ccc
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILAG--------------EMKHGPLA-LVD 537 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~~--------------Ef~HGp~~-~~~ 537 (636)
+.++.+++.+...++++++|.|.+..+|...+.+|. +-..+|+...... +.+=.++. ..+
T Consensus 29 ~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~ 108 (196)
T PRK10886 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_pred HHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCC
Confidence 445667777788999999999999999999999884 3445555543211 11111122 256
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCC-CcceEEEcCCC
Q 006659 538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPG-GSCRVIEVPQV 595 (636)
Q Consensus 538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~-~~~~~~~~p~~ 595 (636)
++..+|+|...|.+ +.+.+.++.++++|.+++.|+..+...+.... ..|..+.+|..
T Consensus 109 ~gDvli~iS~SG~s-~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~ 166 (196)
T PRK10886 109 AGDVLLAISTRGNS-RDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_pred CCCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCC
Confidence 78888888877655 55778899999999999999998766543211 25788999964
No 125
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.67 E-value=0.00074 Score=77.63 Aligned_cols=139 Identities=9% Similarity=0.090 Sum_probs=102.8
Q ss_pred chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCC-CHHHHHH
Q 006659 308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGE-TADTLQA 385 (636)
Q Consensus 308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~-t~e~i~a 385 (636)
.++++++.+...++++++|.|..+..|+.++..+..+..+++..+...||.|-+. .+++++.+|++.-.+. -..+.++
T Consensus 523 ~~~~~a~~l~~~~~~~~lG~G~~yg~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~l~~~~~~~~~~~~~ 602 (680)
T PLN02981 523 EMKELAELLIDEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIATRDACFSKQQSV 602 (680)
T ss_pred HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEEEEcCCchHHHHHHH
Confidence 4677888888999999999999999999999999998889999999999988764 5678888888875665 4567799
Q ss_pred HHHHHHcCCeEEEEEcCCCCcc--ccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 386 LEYASENGALCVGITNTVGSAI--ARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 386 l~~ak~~g~~vi~IT~~~~s~L--a~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
++.++++|.++++|++..+... ....|..+.++..++. ...+ ..+..+.+|+..++..++.
T Consensus 603 ~~el~~~g~~vi~I~~~~~~~~~~~~~~~~~i~~p~~~~~----l~pl-l~iiplQllAy~~A~~~G~ 665 (680)
T PLN02981 603 IQQLRARKGRLIVICSKGDASSVCPSGGCRVIEVPQVEDC----LQPV-INIVPLQLLAYHLTVLRGH 665 (680)
T ss_pred HHHHHHcCCEEEEEEcCCcchhccccCCCeEEEEeccchH----HhHH-HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998643211 1233555666542221 1122 2334467777777766554
No 126
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.0012 Score=68.88 Aligned_cols=135 Identities=14% Similarity=0.119 Sum_probs=103.4
Q ss_pred HHHhhhHHHHHHHHhc-hHHHHHHHHHhcCC--CeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 006659 461 DGLCDLPNKVREVLKL-DQEMKVLAKQLIAE--QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD 537 (636)
Q Consensus 461 ~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~--~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~ 537 (636)
+++++-|....+.++. .+...++++.+... .+++++|+|.++.+|+-++--++.-...+..++...||.|-+.-...
T Consensus 7 ~e~~~~p~~~~~~~~~~~~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se~~~~~~~~~~ 86 (340)
T COG2222 7 REIEQQPAVVARLLEANRAVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAKYLG 86 (340)
T ss_pred HHHHhhHHHHHHHHHhhhhHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceeeeechhHHhccCccccC
Confidence 4455555556665554 55566677666444 69999999999999999999888888888999999999998888888
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc
Q 006659 538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC 598 (636)
Q Consensus 538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~ 598 (636)
++..+|.+.-.|.+-| +...++.+++.|..++.|++..+..+. ..+|+.+.++..++.
T Consensus 87 ~~~lvi~~S~SG~TpE-~vaa~~~a~~~ga~~i~lT~~~dSpLa--~~ad~~i~~~~~~e~ 144 (340)
T COG2222 87 EDSLVIAFSQSGNTPE-SVAAAELAKEGGALTIALTNEEDSPLA--RAADYVIPYLAGEEA 144 (340)
T ss_pred CCeEEEEEeCCCCCHH-HHHHHHHhccCCCeEEEEecCCCChhh--hcCCeeeeccCCchH
Confidence 8877777776666544 556777788889999999999887553 246888888865554
No 127
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.002 Score=61.31 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=85.8
Q ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCC
Q 006659 488 IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKG 567 (636)
Q Consensus 488 ~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~ 567 (636)
....++++.|.|-+--+|+-.|-.|+= ...||....-.|..||..-++.++..++.|..+|++.+ +..++..+|+.|.
T Consensus 37 ~~~gkv~V~G~GkSG~Igkk~Aa~L~s-~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~e-l~~~~~~aK~~g~ 114 (202)
T COG0794 37 ECKGKVFVTGVGKSGLIGKKFAARLAS-TGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKE-LLNLAPKAKRLGA 114 (202)
T ss_pred hcCCcEEEEcCChhHHHHHHHHHHHHc-cCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHH-HHHHHHHHHHcCC
Confidence 346799999999998888877776654 45699999999999999999999999999998887654 5568888999999
Q ss_pred eEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659 568 RLIVMCSKGDAASIFPGGSCRVIEVPQV 595 (636)
Q Consensus 568 ~v~vi~~~~~~~~~~~~~~~~~~~~p~~ 595 (636)
+++.||...++.+.. .+|.++.+|..
T Consensus 115 ~liaiT~~~~SsLak--~aDvvl~ip~~ 140 (202)
T COG0794 115 KLIAITSNPDSSLAK--AADVVLVIPVK 140 (202)
T ss_pred cEEEEeCCCCChHHH--hcCeEEEccCc
Confidence 999999988775532 46788888853
No 128
>PRK13936 phosphoheptose isomerase; Provisional
Probab=97.66 E-value=0.0017 Score=62.77 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccc--------ccccccc------cc-ccc
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGIL--------AGEMKHG------PL-ALV 536 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~--------~~Ef~HG------p~-~~~ 536 (636)
++.++.+++.+...+++++.|.|.+..+|...+.||. +...+++.... ..+-.|- .. ...
T Consensus 30 ~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~ 109 (197)
T PRK13936 30 AQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALG 109 (197)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhC
Confidence 3556777888899999999999999999999999887 34445554331 1111111 11 223
Q ss_pred cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCC-CCcceEEEcCCCC
Q 006659 537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFP-GGSCRVIEVPQVE 596 (636)
Q Consensus 537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~-~~~~~~~~~p~~~ 596 (636)
+++..+|+|...|.+ ..+.+.++.++++|.+++.||..+...+... ...|..+.+|...
T Consensus 110 ~~~Dv~i~iS~sG~t-~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 110 QPGDVLLAISTSGNS-ANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred CCCCEEEEEeCCCCc-HHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 678888888876654 5577889999999999999998765433210 1257788888654
No 129
>PRK13938 phosphoheptose isomerase; Provisional
Probab=97.62 E-value=0.0019 Score=62.18 Aligned_cols=134 Identities=14% Similarity=0.079 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccccccccccc----------------cccc
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILAGEMKHGP----------------LALV 536 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~~Ef~HGp----------------~~~~ 536 (636)
+.++.+++.+....++++.|.|.+..+|...+.||. +..++++....... .|-. -...
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~-~~~~a~~nd~~~~~~~~~~~~~~~ 111 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANS-SHLTAVANDYDYDTVFARALEGSA 111 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCCh-HHHHHhhccccHHHHHHHHHHhcC
Confidence 445566667888999999999999999999999985 33234443332222 1210 1335
Q ss_pred cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHH
Q 006659 537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHL 615 (636)
Q Consensus 537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~l 615 (636)
+++..+|++...|.+ ..+.+.++.++++|.+++.|+......+.. .+|..+.+|..+.....-.-++..+.|+..+
T Consensus 112 ~~~DllI~iS~SG~t-~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~--~aD~~l~v~~~e~~~v~e~h~~~~h~l~~~v 187 (196)
T PRK13938 112 RPGDTLFAISTSGNS-MSVLRAAKTARELGVTVVAMTGESGGQLAE--FADFLINVPSRDTGRIQESHIVFIHAISEHV 187 (196)
T ss_pred CCCCEEEEEcCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCChhhh--hCCEEEEeCCCchhhHHHHHHHHHHHHHHHH
Confidence 677888888776654 557788999999999999999877654422 3577888886433222222333445555444
No 130
>PRK15482 transcriptional regulator MurR; Provisional
Probab=97.60 E-value=0.0025 Score=65.59 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccc---ccccCCCCeEEEEeCCcchHH
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPL---ALVDENLPILVIATRDACFSK 554 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~---~~~~~~~~vi~l~~~~~~~~~ 554 (636)
+.++++++.+..+++++++|.|.++.+|.+...++.-. +.++.... -.|... ..++++..+|+|.-.|.+ ..
T Consensus 123 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~---d~~~~~~~~~~~~~~Dv~i~iS~sg~t-~~ 197 (285)
T PRK15482 123 ARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI-GYRVACEA---DTHVQATVSQALKKGDVQIAISYSGSK-KE 197 (285)
T ss_pred HHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhC-CCeeEEec---cHhHHHHHHhcCCCCCEEEEEeCCCCC-HH
Confidence 45677888888999999999999999999999998864 33443322 123322 235678888888776655 45
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch------hhHHHHHHHHHHHHHHHHH
Q 006659 555 QQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL------QPVINIVPLQLLAYHLTVL 618 (636)
Q Consensus 555 ~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~v~~q~la~~lA~~ 618 (636)
+.++++.++++|++++.||+.....+. ..+|..+.+|..+..+ +.+..+..+++|...++..
T Consensus 198 ~~~~~~~a~~~g~~iI~IT~~~~s~la--~~ad~~l~~~~~~~~~~~~~~ss~~~~~~~id~L~~~~~~~ 265 (285)
T PRK15482 198 IVLCAEAARKQGATVIAITSLADSPLR--RLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQL 265 (285)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchH--HhCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888999999999999998765443 2357788887533322 2233334456665555444
No 131
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=97.52 E-value=0.0033 Score=59.70 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhc-----cccccccc--cccccc-------ccc------cccc
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVA-----LMHSEGIL--AGEMKH-------GPL------ALVD 537 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~-----~~~a~~~~--~~Ef~H-------Gp~------~~~~ 537 (636)
+.++.+++.+...++++++|.|.++.+|.+++.+|.-.. .+++..+. ..++.+ ..+ ..++
T Consensus 21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 334555555667899999999999999999998876332 45554443 222111 111 1367
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC
Q 006659 538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE 596 (636)
Q Consensus 538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~ 596 (636)
+++.+|++...|.+ ..+.+.++.++++|.+++.|++.....+. ..+|..+.+|..+
T Consensus 101 ~~Dv~I~iS~SG~t-~~~i~~~~~ak~~Ga~vI~IT~~~~s~La--~~aD~~l~~~~~~ 156 (177)
T cd05006 101 PGDVLIGISTSGNS-PNVLKALEAAKERGMKTIALTGRDGGKLL--ELADIEIHVPSDD 156 (177)
T ss_pred CCCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCCchh--hhCCEEEEeCCCC
Confidence 78888888876654 55677889999999999999987765443 2367788888543
No 132
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00049 Score=78.65 Aligned_cols=198 Identities=15% Similarity=0.257 Sum_probs=112.4
Q ss_pred CcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH--
Q 006659 62 PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE-- 139 (636)
Q Consensus 62 ~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~-- 139 (636)
..-|||+.-.+..|- .+|.++.+ ..+.++.+|-|.|++||..+++..+||.. .+.|||+|...+
T Consensus 257 ~TIVYKGql~~~ql~-~yY~DL~N------~~y~S~~AlvHsRFSTNTfPsWdrAQPmR-------~l~HNGEINTlrGN 322 (2142)
T KOG0399|consen 257 QTIVYKGQLRPEQLY-NYYPDLTN------AEYKSHFALVHSRFSTNTFPSWDRAQPMR-------FLAHNGEINTLRGN 322 (2142)
T ss_pred ceEEEecccCHHHHh-hhcccccc------hhhcccceeeeeccccCCCCCccccccch-------hhhccCceeeeccc
Confidence 578899988888776 46666543 34679999999999999999999999975 579999997442
Q ss_pred ----HHHHHHHhCC---------Ccc--ccCCHhhHHHHHHHHHHhhccc----------------cC--CCCCCCHHHH
Q 006659 140 ----VLKETLIRHG---------FTF--ESETDTEVIPKLAKFVFDKANE----------------EE--GDQPVTFSQV 186 (636)
Q Consensus 140 ----~l~~~l~~~g---------~~~--~~~tDsE~i~~l~~~~~~~~~~----------------~~--~~~~~~~~~~ 186 (636)
.-|+-+.+.. +++ .+.|||-.+-..++...+..+. .+ .++...+.++
T Consensus 323 ~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~ 402 (2142)
T KOG0399|consen 323 KNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDW 402 (2142)
T ss_pred hhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhhhhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHH
Confidence 2222221111 112 4679998877777655432110 00 0011123333
Q ss_pred HHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc------------Ccccccccc--------eeeccCCCe--
Q 006659 187 VVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD------------GAVSILKFD--------NAKGRNGGT-- 244 (636)
Q Consensus 187 ~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~------------~~~~~~~~~--------~~~~~~g~~-- 244 (636)
..-.++-.+|+.=+.+.| +..+-+.=|+ -|.+| .+++....+ .+.|+||-|
T Consensus 403 ~a~~MEpWDGPALl~FsD---Gry~GA~LDR----NGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~Mll 475 (2142)
T KOG0399|consen 403 AACQMEPWDGPALLTFSD---GRYCGAILDR----NGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLL 475 (2142)
T ss_pred HhhcCCCCCCceEEEecC---Cceeeeeecc----CCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEE
Confidence 333444556665555555 3444333344 34444 122333333 338999998
Q ss_pred ee-CCCcccceeeeeccchhhhhcCChHHHHHHHHHhcHH
Q 006659 245 YA-RPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPE 283 (636)
Q Consensus 245 ~~-~~~~~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~ 283 (636)
++ ..|+.. .--+...+.....+|.+|..+++.....
T Consensus 476 VD~~~g~v~---dd~elK~ris~~~py~~wl~~~~~~l~~ 512 (2142)
T KOG0399|consen 476 VDTELGQVV---DDKELKKRISSRRPYGSWLSENIILLKP 512 (2142)
T ss_pred EEccCCeEE---ecHHHHHHHhhcCcHHHHHHHhhhhhhh
Confidence 22 234411 1111122223356888888887765433
No 133
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=97.47 E-value=0.0025 Score=68.08 Aligned_cols=118 Identities=9% Similarity=0.115 Sum_probs=84.6
Q ss_pred HHhhhHHHHHH---HHhc-hHHHHHHHHHh--cCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccc
Q 006659 462 GLCDLPNKVRE---VLKL-DQEMKVLAKQL--IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLAL 535 (636)
Q Consensus 462 ~l~~l~~~~~~---~~~~-~~~~~~~a~~l--~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~ 535 (636)
++.+-|+.++. .++. .+.++++++.+ .+.++++++|+|.+|-.|+-++--|.+.+.+++......||.|.+-..
T Consensus 8 EI~eqP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~~~~~e~~~~~~~~ 87 (372)
T TIGR02815 8 EIRQQPALWRRLLTIIQALRPALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVSAVPTTDLVSNPRQY 87 (372)
T ss_pred HHHHChHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEEEEeCcccccccccc
Confidence 34444554443 2222 45566666654 456799999999999999999988999999999999999988766555
Q ss_pred cc--CCCCeEEEEeCCcchHHHHHHHHHHHhc--CCeEEEEecCCCCcC
Q 006659 536 VD--ENLPILVIATRDACFSKQQSVIQQLHAR--KGRLIVMCSKGDAAS 580 (636)
Q Consensus 536 ~~--~~~~vi~l~~~~~~~~~~~~~~~~~~~~--g~~v~vi~~~~~~~~ 580 (636)
.+ +++.+|.+.-.|.+.+ +.+.++.+++. |.+++.|++..+..+
T Consensus 88 ~~~~~~~lvi~iSqSGeT~e-tv~a~~~ak~~~~g~~~i~it~~~~s~l 135 (372)
T TIGR02815 88 LDPTRPTLLVSFARSGNSPE-SVAAVELADQLLPECYHLVLTCNEEGAL 135 (372)
T ss_pred cCCCCCeEEEEEeCCcCcHH-HHHHHHHHHHhCCCCcEEEEEcCCCCHH
Confidence 43 3566666665665544 55677788877 789999999876544
No 134
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.45 E-value=0.0013 Score=66.89 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=92.8
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659 492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV 571 (636)
Q Consensus 492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v 571 (636)
++++.|.|.++.+|.+.+.||.. ...++..++..+..+-....+++++.++++...|.+ ..+.+.++.++++|.+++.
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-~~~~~~~~~a~~~g~~ii~ 79 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAS-TGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGES-LELLNLIPHLKRLSHKIIA 79 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHh-cCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCC-HHHHHHHHHHHHcCCcEEE
Confidence 68999999999999999999886 455666665555444333457788888888876654 5567788999999999999
Q ss_pred EecCCCCcCCCCCCcceEEEcCCCC-------cchhhHH-HHHHHHHHHHHHHHHcCCCCCCC
Q 006659 572 MCSKGDAASIFPGGSCRVIEVPQVE-------DCLQPVI-NIVPLQLLAYHLTVLRGYNVDQP 626 (636)
Q Consensus 572 i~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~~~~-~~v~~q~la~~lA~~~G~~pd~p 626 (636)
|++.....+.. .+|..+.++... ..+.+.. .+..+++|...++..+|..+.+.
T Consensus 80 iT~~~~s~l~~--~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~ 140 (268)
T TIGR00393 80 FTGSPNSSLAR--AADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARNFSQEDF 140 (268)
T ss_pred EECCCCCcccc--cCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 99987665432 356777775321 1233333 33345888888898888876543
No 135
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=97.42 E-value=0.0019 Score=59.58 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=84.1
Q ss_pred EEEEeechhHHHHHHHHHHHHHhcC--CcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHH--HHHHHHHHHHc--CC
Q 006659 322 IVFIGCGTSYNAALAARPILEELSD--LPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETAD--TLQALEYASEN--GA 394 (636)
Q Consensus 322 I~i~G~G~S~~aa~~~~~~~~~~~~--~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e--~i~al~~ak~~--g~ 394 (636)
|+++|.|.++..|+.++-++..+.- +.+..+.+.||.|-+. .++++..+|++...+.+.+ ..++++..+++ |+
T Consensus 1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence 6899999999999999999888754 6888888899988764 4678888888887777643 56899999997 89
Q ss_pred eEEEEEcCCCCccccccCeeEEc-CCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 395 LCVGITNTVGSAIARKTHCGVHI-NAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 395 ~vi~IT~~~~s~La~~ad~~l~~-~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
++++|+...+......+++.+.. +...+ .-+-...+..+++|+..++..++.
T Consensus 81 ~vi~i~~~~~~~~~~~~~~~l~~~~~~~~-----~l~p~~~iip~Qlla~~~A~~~G~ 133 (151)
T cd05010 81 RVIAISPESDAGIEDNSHYYLPGSRDLDD-----VYLAFPYILYAQLFALFNSIALGL 133 (151)
T ss_pred eEEEEEcCCccccccccceeecccCCccc-----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999875322222223332221 11111 111222344556777777665543
No 136
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=97.41 E-value=0.0044 Score=59.65 Aligned_cols=133 Identities=18% Similarity=0.175 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccccccccccc---------------cc-cc
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILAGEMKHGP---------------LA-LV 536 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~~Ef~HGp---------------~~-~~ 536 (636)
+.++.+++.+...+++++.|.|.++.+|...+..+. ....+++... .+..|.. .. ..
T Consensus 32 ~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 32 RAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 444555666667799999999999999999986553 2234555444 2332321 11 24
Q ss_pred cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc-hhhHHHHHHHHHHHHHH
Q 006659 537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC-LQPVINIVPLQLLAYHL 615 (636)
Q Consensus 537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~v~~q~la~~l 615 (636)
++++.+|++...|.+ ..+.+.++.++++|.+++.|+...+..+. ..+|..+.+|..... -..-......|+|+..+
T Consensus 110 ~~~Dv~I~iS~SG~t-~~~i~~~~~ak~~g~~iI~iT~~~~s~l~--~~ad~~l~~~~~~~~~~~~~~~~~~~~~l~~~v 186 (192)
T PRK00414 110 REGDVLLGISTSGNS-GNIIKAIEAARAKGMKVITLTGKDGGKMA--GLADIEIRVPHFGYADRIQEIHIKVIHILIQLI 186 (192)
T ss_pred CCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEEEeCCCCChhH--HhCCEEEEeCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 678888888877655 55667888999999999999998765442 135778888863322 11112223455555443
No 137
>PRK02947 hypothetical protein; Provisional
Probab=97.29 E-value=0.011 Score=59.42 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcc-----ccccc-------cccccccccc------cccccC
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVAL-----MHSEG-------ILAGEMKHGP------LALVDE 538 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~-----~~a~~-------~~~~Ef~HGp------~~~~~~ 538 (636)
++.++.+++.+...++++++|.|.+..+|.++..|+.-... .++.. ...-|..+|. ...+++
T Consensus 27 ~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (246)
T PRK02947 27 EKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRP 106 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCC
Confidence 34456677778889999999999999999998887631111 11110 0111222232 223567
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCC
Q 006659 539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKG 576 (636)
Q Consensus 539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~ 576 (636)
+..+|+|...|.+ ..+.++++.++++|.+++.||...
T Consensus 107 ~Dv~i~iS~sG~t-~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 107 GDVLIVVSNSGRN-PVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEcCCc
Confidence 8888888876655 456778999999999999999875
No 138
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.28 E-value=0.004 Score=71.48 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ 556 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~ 556 (636)
.+.+.++++.+.+.++++++|.|.++.+|.+...++... .+++..+.-..+..-....++++..+|+|...+.+.+ +.
T Consensus 455 ~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~l-g~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e-~i 532 (638)
T PRK14101 455 FEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRF-GIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPE-LL 532 (638)
T ss_pred HHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcC-CceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHH-HH
Confidence 466788888999999999999999999999999998764 5555544322222212234678888888876665544 77
Q ss_pred HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC--cc----hhhHHHHHHHHHHHHHHHHHc
Q 006659 557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE--DC----LQPVINIVPLQLLAYHLTVLR 619 (636)
Q Consensus 557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~--~~----~~~~~~~v~~q~la~~lA~~~ 619 (636)
++++.++++|.+++.||.. ...+. ..+|.++.++... .. .+-+..+..++.|...++..+
T Consensus 533 ~~~~~Ak~~Ga~vIaIT~~-~spLa--~~aD~~L~~~~~~~~~s~~~~~s~~~~l~lid~L~~~l~~~~ 598 (638)
T PRK14101 533 RVLDVAMQAGAKVIAITSS-NTPLA--KRATVALETDHIEMRESQLSMISRILHLVMIDILAVGVAIRR 598 (638)
T ss_pred HHHHHHHHCCCeEEEEcCC-CChhH--hhCCEEEEcCCccchhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999985 33332 1356667665321 11 222233445677777777766
No 139
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.16 E-value=0.0048 Score=67.08 Aligned_cols=112 Identities=22% Similarity=0.199 Sum_probs=69.9
Q ss_pred chHHHHHHHc-CCCeEEEEeechhHHHHHHHHHHHHHhc----------CCcE-EE---eeccchhcccCCC-CCCcEEE
Q 006659 308 GLKDHLKTIR-RSRRIVFIGCGTSYNAALAARPILEELS----------DLPV-TM---EIASDLVDRQAPI-YREDTAV 371 (636)
Q Consensus 308 ~l~~~~~~l~-~~~~I~i~G~G~S~~aa~~~~~~~~~~~----------~~~~-~~---~~~~e~~~~~~~~-~~~dlvI 371 (636)
.++++++.++ ..+.|+++|+|+|+..+..+...+.... +..+ .+ .++..+......+ .+++++|
T Consensus 61 ~i~~~~~~~~~~~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~~~tl~i 140 (448)
T PRK14097 61 RIKKAAEKIKSDSDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKDKDFSIN 140 (448)
T ss_pred HHHHHHHHHhcCCCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCCCcEEEE
Confidence 3444555554 3589999999999888877777664310 1222 12 2222222222222 3688999
Q ss_pred EEcCCCCCHHHHHHHHHHHH-----cCC-----eEEEEEcCCCCccccccC----eeEEcCC
Q 006659 372 FVSQSGETADTLQALEYASE-----NGA-----LCVGITNTVGSAIARKTH----CGVHINA 419 (636)
Q Consensus 372 ~iS~SG~t~e~i~al~~ak~-----~g~-----~vi~IT~~~~s~La~~ad----~~l~~~~ 419 (636)
++|.||.|.||....+.+++ .|. .+++||+.....|.+.|+ .++.++.
T Consensus 141 ViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip~ 202 (448)
T PRK14097 141 VISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIPD 202 (448)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCCC
Confidence 99999999999988876552 131 377787765556888777 3555543
No 140
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=97.13 E-value=0.0026 Score=58.92 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=76.8
Q ss_pred HHHHHHhcCCCeEEEEeCCCCHHHHHHHHH------HHHHhccccccccc-cc--------ccc-cccc-----ccccCC
Q 006659 481 KVLAKQLIAEQSLLVFGRGYNYATALEGAL------KVKEVALMHSEGIL-AG--------EMK-HGPL-----ALVDEN 539 (636)
Q Consensus 481 ~~~a~~l~~~~~~~~lG~G~~~~~A~e~al------Kl~E~~~~~a~~~~-~~--------Ef~-HGp~-----~~~~~~ 539 (636)
+++++.+...++++++|.|.++.+|..++. |+. ...+++.... .. ++. ...+ ...+++
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYREN-RPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKG 80 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccC-CCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCC
Confidence 356777889999999999999999999864 333 3355555443 10 100 0111 124677
Q ss_pred CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc
Q 006659 540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED 597 (636)
Q Consensus 540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~ 597 (636)
+.+|++...|.+ ..+.+.++.++++|.+++.|+......+. ..+|..+.+|..++
T Consensus 81 D~~i~iS~sG~t-~~~~~~~~~a~~~g~~ii~iT~~~~s~l~--~~ad~~l~~~~~~~ 135 (154)
T TIGR00441 81 DVLLGISTSGNS-KNVLKAIEAAKDKGMKTITLAGKDGGKMA--GLADIELRVPHFYT 135 (154)
T ss_pred CEEEEEcCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCCchh--hhCCEEEEeCCCCc
Confidence 888888776654 56678889999999999999987765443 23577888886543
No 141
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=97.06 E-value=0.013 Score=60.44 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=88.7
Q ss_pred HHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHH-HHHHHHHHHhccc----cc---ccc----ccccccc---
Q 006659 467 PNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATA-LEGALKVKEVALM----HS---EGI----LAGEMKH--- 530 (636)
Q Consensus 467 ~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A-~e~alKl~E~~~~----~a---~~~----~~~Ef~H--- 530 (636)
++.+...++. .+.++.+++.+....+++++|.|.+.-+| ..+..++--...- +. -+. ..-|...
T Consensus 38 ~~av~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~ 117 (299)
T PRK05441 38 ALAVEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDA 117 (299)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChH
Confidence 3333333332 44466777888899999999999988777 4443332111110 00 000 0011111
Q ss_pred ----cccc--cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch-----
Q 006659 531 ----GPLA--LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL----- 599 (636)
Q Consensus 531 ----Gp~~--~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~----- 599 (636)
..+. .++++..+|++..+|.+ ..+...++.++++|.+++.|++..+..+.. ..|..+.++..+|.+
T Consensus 118 ~~~~~~l~~~~l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~--~aD~~I~~~~g~E~~~~st~ 194 (299)
T PRK05441 118 ELGAADLKAINLTAKDVVVGIAASGRT-PYVIGALEYARERGALTIGISCNPGSPLSK--EADIAIEVVVGPEVLTGSTR 194 (299)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEEEECCCCChhhH--hCCEEEEcCCCCcccccccc
Confidence 1221 25678888888776665 447788899999999999999877654421 356667666333321
Q ss_pred --hhHHHHHHHHHHHHHHHHHcCC
Q 006659 600 --QPVINIVPLQLLAYHLTVLRGY 621 (636)
Q Consensus 600 --~~~~~~v~~q~la~~lA~~~G~ 621 (636)
+.......+.+++..+....|.
T Consensus 195 ~~s~taqk~iLn~lst~~~~~~gk 218 (299)
T PRK05441 195 MKAGTAQKLVLNMISTGVMIRLGK 218 (299)
T ss_pred ccchhHHHHHHHHHHHHHHHHccH
Confidence 2223344557777777766665
No 142
>PLN02649 glucose-6-phosphate isomerase
Probab=97.01 E-value=0.028 Score=62.50 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhc-------CCcEEEee---ccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELS-------DLPVTMEI---ASDLVDRQAPIY-REDTAVFVSQSGETADTLQAL 386 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~-------~~~~~~~~---~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al 386 (636)
..+.|+.+|+|+|+-....+...+.... +..+.+.+ +..+......++ +.+++|++|.||.|.||+..+
T Consensus 146 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~iViSKSgtT~ET~~n~ 225 (560)
T PLN02649 146 RFTNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTAETMLNA 225 (560)
T ss_pred ccceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHH
Confidence 4688999999999887777777665432 11333322 222322222233 578999999999999999888
Q ss_pred HHHHH----c-C-----CeEEEEEcCCCCccccccC
Q 006659 387 EYASE----N-G-----ALCVGITNTVGSAIARKTH 412 (636)
Q Consensus 387 ~~ak~----~-g-----~~vi~IT~~~~s~La~~ad 412 (636)
+.+++ + | -..|+||. ++++.+.+.
T Consensus 226 ~~~r~~l~~~~g~~~~~~h~vavT~--~~~l~~~a~ 259 (560)
T PLN02649 226 RTVRKWLRDALGGLAVAKHMVAVST--NLLLVNKFG 259 (560)
T ss_pred HHHHHHHHhhcccccccceEEEECC--ChHHHHHhC
Confidence 77663 2 2 24788884 556777765
No 143
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=96.97 E-value=0.0043 Score=54.79 Aligned_cols=100 Identities=13% Similarity=0.148 Sum_probs=68.2
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659 492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV 571 (636)
Q Consensus 492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v 571 (636)
+++++|.|.++.+|.....++.....+++......++.+ ..++++.+|++...|.+ ..+.+.++.++++|.+++.
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~dl~I~iS~SG~t-~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPA----FVDRKTLVIAVSYSGNT-EETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccCcC----CCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEE
Confidence 478999999999999888888886666766655433321 45677888888766654 5566788889999999999
Q ss_pred EecCCCCcCCCCCCcceEEEcCCCC
Q 006659 572 MCSKGDAASIFPGGSCRVIEVPQVE 596 (636)
Q Consensus 572 i~~~~~~~~~~~~~~~~~~~~p~~~ 596 (636)
|+..+.-....+..+...+.+|...
T Consensus 76 IT~~~~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 76 ITSGGKLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred EeCCchHHHHHHHcCCcEEECCCCC
Confidence 9975421100011123568888643
No 144
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=96.91 E-value=0.024 Score=62.88 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=62.5
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEeecc---chhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEIAS---DLVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE 391 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~~~---e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~ 391 (636)
..+.|+++|+|+|+-....+...+.... +..+.+.+.. .+......++ +.+++|++|-||.|.||...++.+++
T Consensus 144 ~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ET~~n~~~~~~ 223 (548)
T PRK00179 144 AITDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARD 223 (548)
T ss_pred ccCeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3689999999999888888777665432 2233332222 2222222233 67899999999999999966665442
Q ss_pred ----c-------CCeEEEEEcCCCCccccccC---eeEEcCC
Q 006659 392 ----N-------GALCVGITNTVGSAIARKTH---CGVHINA 419 (636)
Q Consensus 392 ----~-------g~~vi~IT~~~~s~La~~ad---~~l~~~~ 419 (636)
+ +-..|+||.+ .+++++..- .++.++.
T Consensus 224 ~l~~~~~~~~~~~~h~vaVT~~-~~~~~~~g~~~~~~F~~~d 264 (548)
T PRK00179 224 WFLAAGGDEAAVAKHFVAVSTN-AEAVAEFGIDPDNMFGFWD 264 (548)
T ss_pred HHHHhcCccccccceEEEEcCC-cHHHHHcCCchhcEEECCC
Confidence 2 1237788886 444554322 2555543
No 145
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=96.73 E-value=0.017 Score=63.53 Aligned_cols=187 Identities=16% Similarity=0.072 Sum_probs=97.5
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhcCC--cEEEeeccc---hhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELSDL--PVTMEIASD---LVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE 391 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~--~~~~~~~~e---~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~ 391 (636)
..+.|+++|+|+|+-....+...+...... .+.+.+..+ +......++ +++++|++|.||.|.||+..++.+++
T Consensus 95 ~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~ 174 (486)
T PF00342_consen 95 PITDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIARE 174 (486)
T ss_dssp B-SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHH
T ss_pred ceeEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999998888887777665432 344433322 222233444 46899999999999999988887765
Q ss_pred ----c-------CCeEEEEEcCCCCcccccc--CeeEEcCCC--CcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHH
Q 006659 392 ----N-------GALCVGITNTVGSAIARKT--HCGVHINAG--AEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARR 456 (636)
Q Consensus 392 ----~-------g~~vi~IT~~~~s~La~~a--d~~l~~~~~--~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~ 456 (636)
+ +-..|+||++....+...+ +.++.++.. -.-++-+..++. ..++..+ ..+
T Consensus 175 ~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~VGGRfSv~SaVGlp------~ala~G~--------~~~ 240 (486)
T PF00342_consen 175 WLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDWVGGRFSVLSAVGLP------LALAGGF--------IDF 240 (486)
T ss_dssp HHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TTS-GGGTTTSGGGHH------HHHHHHH--------HHH
T ss_pred HHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceeccccccccccCCCCCchH------HHHHcCh--------hhH
Confidence 2 2469999988555443333 255655442 111221222211 1112111 123
Q ss_pred HHHHHHHhhhHHHHHHHHhchHH------HHHHHHHhcCCCeEEEEeC-CCCHHHHHHHHHHHHHhccc
Q 006659 457 EAIIDGLCDLPNKVREVLKLDQE------MKVLAKQLIAEQSLLVFGR-GYNYATALEGALKVKEVALM 518 (636)
Q Consensus 457 ~~~~~~l~~l~~~~~~~~~~~~~------~~~~a~~l~~~~~~~~lG~-G~~~~~A~e~alKl~E~~~~ 518 (636)
+++++..+.+.+.+...--..+. +.-+.....+....+++.. -.....+....+-++|..+.
T Consensus 241 ~~lL~GA~~md~~f~~~~~~~N~p~~~All~~~~~~~~g~~~~~i~~Y~~~L~~l~~w~qQL~mESlGK 309 (486)
T PF00342_consen 241 EELLAGARAMDEHFRSAPLEKNPPVLYALLRVWNSNFLGYNIEVILPYSPRLRRLPAWLQQLWMESLGK 309 (486)
T ss_dssp HHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTST-SEEEEEESSGGGTTHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHhcCCChhhCHHHHHHHHHHHHHhhhccchhccccCChHHHHHHHHHHHhcccccch
Confidence 33333333333333221101111 1122222335555555554 44567777888889999876
No 146
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=96.53 E-value=0.028 Score=50.98 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccc--------------cccccc----ccc--c
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAG--------------EMKHGP----LAL--V 536 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~--------------Ef~HGp----~~~--~ 536 (636)
+..++.+++.+..-.+++++|.|.+...|.+.+..+.....+.......- |+..|. ... +
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 34556677778888999999999999999999998887664443332111 111111 122 5
Q ss_pred cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEec
Q 006659 537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCS 574 (636)
Q Consensus 537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~ 574 (636)
.++..+|+|...|. .....+.++..+++|.+||.|+.
T Consensus 102 ~~gDvli~iS~SG~-s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSGN-SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS--SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCCC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 67888888887664 47778899999999999999874
No 147
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=96.47 E-value=0.038 Score=58.25 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=82.9
Q ss_pred HHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC
Q 006659 459 IIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDE 538 (636)
Q Consensus 459 ~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~ 538 (636)
+.+.+..+|+.+++..+.... ..+...+...++++++|.|.++.+|.....++.....+++..... .|.|. .+++
T Consensus 4 m~~~~~~~~~q~~~a~~~~~~-~~~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~ 78 (337)
T PRK08674 4 MLEEYLNWPEQFEEALEIAIS-LDLEEDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVNRD---YTLPA-FVDE 78 (337)
T ss_pred HHHHHHhHHHHHHHHHHhhhc-cchhhhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEeCc---cchhh-cCCC
Confidence 445667788888887754111 223334557889999999999888887777765556666555322 22232 3477
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCC--CCCcceEEEcCC
Q 006659 539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIF--PGGSCRVIEVPQ 594 (636)
Q Consensus 539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~--~~~~~~~~~~p~ 594 (636)
++.+|++...|.+ ..+.+.++.++++|.++++||+.+. +.. +..+...+.+|.
T Consensus 79 ~dlvI~iS~SG~T-~e~~~a~~~a~~~ga~vIaIT~~~~--L~~~a~~~~~~~i~ip~ 133 (337)
T PRK08674 79 KTLVIAVSYSGNT-EETLSAVEQALKRGAKIIAITSGGK--LKEMAKEHGLPVIIVPG 133 (337)
T ss_pred CcEEEEEcCCCCC-HHHHHHHHHHHHCCCeEEEECCCch--HHHHHHhcCCeEEEeCC
Confidence 7888877765544 5566788888999999999997542 210 011345788884
No 148
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=96.43 E-value=0.17 Score=51.09 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=86.5
Q ss_pred HhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHH-HHHHHHHHhccccc--------cccc----cccc
Q 006659 463 LCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATAL-EGALKVKEVALMHS--------EGIL----AGEM 528 (636)
Q Consensus 463 l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~-e~alKl~E~~~~~a--------~~~~----~~Ef 528 (636)
-..++..++..++. .+.++.+++.+....+++++|.|.+--+|. .++-++. ....+. -+.. .-|.
T Consensus 21 ~~~~~~av~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~-tfg~~~~~v~~~iagg~~a~~~a~~~ 99 (257)
T cd05007 21 DKKVAAAVEAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPP-TFGTPPERVVGLIAGGEPALTRAVEG 99 (257)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccc-cccCCcccceEEEeCCHHHHHhhccc
Confidence 33344444444443 455677788888899999999998765553 2222221 111100 0000 0011
Q ss_pred cccc-------c--ccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch
Q 006659 529 KHGP-------L--ALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL 599 (636)
Q Consensus 529 ~HGp-------~--~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~ 599 (636)
.++. + ..++++..+|+|...|.+ ..+...++.++++|.+++.|++.....+.. ..|..+.++..++.+
T Consensus 100 ~edd~~~~~~~l~a~~l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~--~aD~~I~~~~g~E~~ 176 (257)
T cd05007 100 AEDDEEAGAADLQAINLTERDVVIGIAASGRT-PYVLGALRYARARGALTIGIACNPGSPLLQ--LADIAIALITGPEVV 176 (257)
T ss_pred cCChHHHHHHHHHHcCCCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEEEECCCCChhHH--hCCEEEEcCCCCccc
Confidence 1111 1 123577888888776665 447788899999999999999887654421 246667665333321
Q ss_pred -------hhHHHHHHHHHHHHHHHHHcC
Q 006659 600 -------QPVINIVPLQLLAYHLTVLRG 620 (636)
Q Consensus 600 -------~~~~~~v~~q~la~~lA~~~G 620 (636)
+.......+.+++..+....|
T Consensus 177 ~~st~~~s~~aqk~vLn~L~t~~~~~~g 204 (257)
T cd05007 177 AGSTRLKAGTAQKLALNMLSTAVMIRLG 204 (257)
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHcc
Confidence 123334445666666666555
No 149
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=96.21 E-value=0.033 Score=51.35 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYA 389 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~a 389 (636)
+-+++.+-.-.+||+.|.|---.....+-+--++ ++-...-..+ ......+++-|-|+.+|..-+..+.++.++++
T Consensus 29 RlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~---l~~~k~l~~~-~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~L 104 (172)
T PF10740_consen 29 RLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEP---LPSAKRLSED-LENFDELTETDRVLLFSPFSTDEEAVALAKQL 104 (172)
T ss_dssp HHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT-----TTEEE--TT---------TT-EEEEEES-S--HHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCC---CchhhcCccc-ccccccccccceEEEEeCCCCCHHHHHHHHHH
Confidence 3344556677999999999775332222221111 1111111111 11122467888999999998899999999999
Q ss_pred HHcCCeEEEEE-c-CCCCccccccCeeEEcCC
Q 006659 390 SENGALCVGIT-N-TVGSAIARKTHCGVHINA 419 (636)
Q Consensus 390 k~~g~~vi~IT-~-~~~s~La~~ad~~l~~~~ 419 (636)
.++|+++|+|+ + .....+..++|+.|.+..
T Consensus 105 ~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~ 136 (172)
T PF10740_consen 105 IEQGIPFVGVSPNKPDEEDLEDLADVHIDLKL 136 (172)
T ss_dssp HHHT--EEEEE-SS---TTGGG-SSS-EE---
T ss_pred HHCCCCEEEEEecCCCCCchhhhhhheeeccc
Confidence 99999999999 2 335568999999888755
No 150
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.20 E-value=0.18 Score=51.96 Aligned_cols=142 Identities=11% Similarity=0.015 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHH-HHHHHHHHhccccccc-------------------ccccccccccc--c
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATAL-EGALKVKEVALMHSEG-------------------ILAGEMKHGPL--A 534 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~-e~alKl~E~~~~~a~~-------------------~~~~Ef~HGp~--~ 534 (636)
.+.++.+++.+....+++++|.|.+..+|. ++...+.-.. .+... ++.++.....+ .
T Consensus 45 ~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~-~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~ 123 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFS-VSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAI 123 (296)
T ss_pred HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhc-CCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHc
Confidence 445566777888889999999998866643 3322221111 11110 00011111111 1
Q ss_pred cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc-------hhhHHHHHH
Q 006659 535 LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC-------LQPVINIVP 607 (636)
Q Consensus 535 ~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~v~ 607 (636)
.++++..+|++...|.+. .+...++.++++|.+++.|++.....+.. ..|..+.+...++. -+.+.....
T Consensus 124 ~l~~~DvvI~IS~SG~T~-~vi~al~~Ak~~Ga~~IaIT~~~~s~La~--~aD~~I~~~~g~E~~~~st~~~s~taqk~v 200 (296)
T PRK12570 124 GLTADDVVVGIAASGRTP-YVIGALEYAKQIGATTIALSCNPDSPIAK--IADIAISPVVGPEVLTGSTRLKSGTAQKMV 200 (296)
T ss_pred CCCCCCEEEEEeCCCCCH-HHHHHHHHHHHCCCeEEEEECCCCChhHH--hCCEEEeeCcCCccccccchHHHHHHHHHH
Confidence 245788888888777654 47788899999999999999887654421 24555554322222 123344556
Q ss_pred HHHHHHHHHHHcCCC
Q 006659 608 LQLLAYHLTVLRGYN 622 (636)
Q Consensus 608 ~q~la~~lA~~~G~~ 622 (636)
+.+|+..+....|.-
T Consensus 201 Ld~L~t~~~~r~Gk~ 215 (296)
T PRK12570 201 LNMLSTASMIRLGKS 215 (296)
T ss_pred HHHHHHHHHHhcchh
Confidence 788888887777753
No 151
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=95.91 E-value=0.095 Score=54.32 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=68.9
Q ss_pred HhcCCCeEEEEeCCCCHHHHHHHHHHHHHhc-cccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHh
Q 006659 486 QLIAEQSLLVFGRGYNYATALEGALKVKEVA-LMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHA 564 (636)
Q Consensus 486 ~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~-~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~ 564 (636)
.+...++++++|.|.++.+|.....++.... .+++... .++ |-| ..+++++.+|++..+|.+.+ +...++.+++
T Consensus 17 ~~~~~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~--~d~-~l~-~~~~~~dlvI~iS~SG~t~e-~~~a~~~A~~ 91 (308)
T TIGR02128 17 ILKIYDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVV--KDY-RLP-RFVDGKTLLIAVSYSGNTEE-TLSAVEEAKK 91 (308)
T ss_pred HHhcCCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEE--cCc-ccc-ccCCCCeEEEEEcCCCCCHH-HHHHHHHHHH
Confidence 3344689999999999999998888888766 3565543 222 222 34567777777776665544 5567888888
Q ss_pred cCCeEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659 565 RKGRLIVMCSKGDAASIFPGGSCRVIEVPQV 595 (636)
Q Consensus 565 ~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~ 595 (636)
+|.++++|+..+.-.......++..+.+|..
T Consensus 92 ~g~~ii~iT~~g~L~~~a~~~~~~~i~vP~~ 122 (308)
T TIGR02128 92 KGAKVIAITSGGRLEEMAKERGLDVIKIPKG 122 (308)
T ss_pred cCCEEEEECCCcHHHHHHHhcCCeEEEcCCC
Confidence 9999999996442100000123567888864
No 152
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.70 E-value=0.43 Score=49.04 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHH-HHHHHHHHHhccccc------------------cccc-cccccccccc--
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATA-LEGALKVKEVALMHS------------------EGIL-AGEMKHGPLA-- 534 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A-~e~alKl~E~~~~~a------------------~~~~-~~Ef~HGp~~-- 534 (636)
.+.++.+++.+....+++++|.|.+--+| ++++-++--. ..++ ++.+ ..+.-...+.
T Consensus 44 ~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~-g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~ 122 (291)
T TIGR00274 44 AAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTF-GVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNI 122 (291)
T ss_pred HHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhc-CCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhc
Confidence 34456667778888999999999764443 3333222111 1111 1111 1111112221
Q ss_pred cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc------h-hhHHHHHH
Q 006659 535 LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC------L-QPVINIVP 607 (636)
Q Consensus 535 ~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~------~-~~~~~~v~ 607 (636)
.++++..+|++...|.+ ..+...++.++++|.+++.|++........ ..|..+.++..+|. + +.+.....
T Consensus 123 ~l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~--~aD~~I~~~~g~E~~~~st~~~s~~aqk~i 199 (291)
T TIGR00274 123 HLTKNDVVVGIAASGRT-PYVIAGLQYARSLGALTISIACNPKSAASE--IADIAIETIVGPEILTGSSRLKAGTAQKMV 199 (291)
T ss_pred CCCCCCEEEEEeCCCCc-HHHHHHHHHHHHCCCeEEEEECCCCChhHH--hCCEEEecCCCCccccccchhhHHHHHHHH
Confidence 35678888998887765 447788899999999999999876554321 24566665422222 1 23344556
Q ss_pred HHHHHHHHHHHcCCCC
Q 006659 608 LQLLAYHLTVLRGYNV 623 (636)
Q Consensus 608 ~q~la~~lA~~~G~~p 623 (636)
+++|+..+....|.--
T Consensus 200 Ld~L~t~~~~~~gk~~ 215 (291)
T TIGR00274 200 LNMLSTASMIKLGKVY 215 (291)
T ss_pred HHHHHHHHHHhcchhh
Confidence 7888888888877543
No 153
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=95.47 E-value=0.43 Score=55.87 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCcEEEEEc-CCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCCc-----------------cccccCeeEEcCCCCccccc
Q 006659 366 REDTAVFVS-QSGET-ADTLQALEYASENGALCVGITNTVGSA-----------------IARKTHCGVHINAGAEIGVA 426 (636)
Q Consensus 366 ~~dlvI~iS-~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s~-----------------La~~ad~~l~~~~~~e~~~~ 426 (636)
.-|++|++. ..+++ +.+...++.|+++|+++|+|-.....- -++.||..|.+..|.+.
T Consensus 198 ~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD~--- 274 (743)
T TIGR01701 198 HTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRIGGDI--- 274 (743)
T ss_pred hCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCCCcHH---
Confidence 356666664 44543 456677888999999999996643321 16778888876554332
Q ss_pred chhhHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCCC-
Q 006659 427 STKAYTSQIVVMAMLALAIGGDT-----ISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAEQ- 491 (636)
Q Consensus 427 ~t~s~~~~~~~l~lL~~~~~~~~-----~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~~- 491 (636)
.+++.++-..+.... .-+.+.+++....++.+ ++.+.+.--. .+.++++|+.+...+
T Consensus 275 --------AL~~g~~~~li~~~~~~~~~~~D~~Fi~~~t~Gfe~l~~~v~~~t~e~~~~~tGv~~~~I~~~A~~~a~a~~ 346 (743)
T TIGR01701 275 --------ALFNGVMKLLIEAEDAQPGSLIDHEFIANHTNGFDELRRHVLQLNWNDIERSSGLSQEEILEFAKLLANSRR 346 (743)
T ss_pred --------HHHHHHHHHHHHCCCccccccccHHHHHHhcchHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhCCC
Confidence 111112222222220 11233333333333322 2333332222 677889999887654
Q ss_pred eEEEEeCCCC
Q 006659 492 SLLVFGRGYN 501 (636)
Q Consensus 492 ~~~~lG~G~~ 501 (636)
.+++.|.|..
T Consensus 347 ~~i~~g~G~~ 356 (743)
T TIGR01701 347 VVFCWAMGLT 356 (743)
T ss_pred EEEEECcccc
Confidence 5677788865
No 154
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=95.43 E-value=0.032 Score=61.85 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=55.8
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhc-------CCcEEEe---eccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELS-------DLPVTME---IASDLVDRQAPIY-REDTAVFVSQSGETADTLQAL 386 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~-------~~~~~~~---~~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al 386 (636)
..+.|+.+|+|+|+-....+...+.... +..+... ++.++......++ +.+++|++|-||.|.||+..+
T Consensus 141 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~~TLfiViSKSgtT~ETl~n~ 220 (552)
T PTZ00430 141 KLKNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVIISKTFTTAETMLNA 220 (552)
T ss_pred eeceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHH
Confidence 4678999999999887777776665431 1233332 2333322222233 578999999999999999666
Q ss_pred HHHHH----c-C------CeEEEEEcCC
Q 006659 387 EYASE----N-G------ALCVGITNTV 403 (636)
Q Consensus 387 ~~ak~----~-g------~~vi~IT~~~ 403 (636)
+.+++ + | -..|+||++.
T Consensus 221 ~~~r~wl~~~~~~~~~~~~h~vavT~~~ 248 (552)
T PTZ00430 221 KTVRQWLLDNIKSKEALSKHLCAVSTNL 248 (552)
T ss_pred HHHHHHHHHhccccccccCeEEEEcCch
Confidence 65543 1 1 2478999854
No 155
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=95.29 E-value=0.37 Score=54.55 Aligned_cols=125 Identities=17% Similarity=0.252 Sum_probs=67.2
Q ss_pred CCcEEEEEcC-CCC-CHHHHHHHHHHHHcCCeEEEEEcCCCC----------------ccccccCeeEEcCCCCcccccc
Q 006659 366 REDTAVFVSQ-SGE-TADTLQALEYASENGALCVGITNTVGS----------------AIARKTHCGVHINAGAEIGVAS 427 (636)
Q Consensus 366 ~~dlvI~iS~-SG~-t~e~i~al~~ak~~g~~vi~IT~~~~s----------------~La~~ad~~l~~~~~~e~~~~~ 427 (636)
.-|++|++.+ .+. .+.+...++.|+++|+++|+|-..... ..++.||..|.+..|.+.
T Consensus 163 ~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irPGtD~---- 238 (574)
T cd02767 163 HTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGDI---- 238 (574)
T ss_pred cCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCCCcHH----
Confidence 4566666644 444 356677788999999999999775432 346778887766543332
Q ss_pred hhhHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHhhhH--------HHHHHHHhc-hHHHHHHHHHhcCCC-eE
Q 006659 428 TKAYTSQIVVMAMLALAIGGD----TISTQARREAIIDGLCDLP--------NKVREVLKL-DQEMKVLAKQLIAEQ-SL 493 (636)
Q Consensus 428 t~s~~~~~~~l~lL~~~~~~~----~~~~~~~~~~~~~~l~~l~--------~~~~~~~~~-~~~~~~~a~~l~~~~-~~ 493 (636)
.+++.++-..+... ..-+.+.+++....++.+. +.+.+.--. .+.++++|+.+...+ .+
T Consensus 239 -------AL~~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~e~~~~~tGv~~e~I~~~A~~~a~a~~~i 311 (574)
T cd02767 239 -------ALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGLSREEIEAFAAMYAKSERVV 311 (574)
T ss_pred -------HHHHHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCHHHHHhHhCcCHHHHHHHHHHHHhCCCEE
Confidence 11111222222221 1112333333322222222 222222222 577889999987765 55
Q ss_pred EEEeCCCC
Q 006659 494 LVFGRGYN 501 (636)
Q Consensus 494 ~~lG~G~~ 501 (636)
++.|.|..
T Consensus 312 i~~g~Gi~ 319 (574)
T cd02767 312 FVWGMGIT 319 (574)
T ss_pred EEecchhc
Confidence 66688764
No 156
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=95.04 E-value=0.19 Score=46.62 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=65.7
Q ss_pred HHHHHHHHhc---CCCeEEEEeCCCCHH---HHHHHHHHHHHhcccc--cccccccccccccccccc-CCCCeEEEEeCC
Q 006659 479 EMKVLAKQLI---AEQSLLVFGRGYNYA---TALEGALKVKEVALMH--SEGILAGEMKHGPLALVD-ENLPILVIATRD 549 (636)
Q Consensus 479 ~~~~~a~~l~---~~~~~~~lG~G~~~~---~A~e~alKl~E~~~~~--a~~~~~~Ef~HGp~~~~~-~~~~vi~l~~~~ 549 (636)
.++++++++. ..++++++|.|-++. .+.++..++.- ...+ .....-.++.+-....++ +++.++++.-.|
T Consensus 6 ~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~-~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG 84 (158)
T cd05015 6 RIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFK-GGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSG 84 (158)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhcc-CCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCc
Confidence 3455565553 478999999999877 55566555321 1222 222222444333333444 566666666566
Q ss_pred cchHHHHHHHHHHHh---------cCCeEEEEecCCCCcCC-CCCCcceEEEcCC-CCcchh
Q 006659 550 ACFSKQQSVIQQLHA---------RKGRLIVMCSKGDAASI-FPGGSCRVIEVPQ-VEDCLQ 600 (636)
Q Consensus 550 ~~~~~~~~~~~~~~~---------~g~~v~vi~~~~~~~~~-~~~~~~~~~~~p~-~~~~~~ 600 (636)
.+.|-+ ...+.+++ .+.++++||+.+..... ........+.+|. +.+-++
T Consensus 85 ~T~Et~-~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~~vggR~S 145 (158)
T cd05015 85 TTLETL-ANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIPDWVGGRFS 145 (158)
T ss_pred CCHHHH-HHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCCCCCCchHH
Confidence 665543 33444444 68899999997653211 1123445677774 443333
No 157
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.20 E-value=1.5 Score=49.03 Aligned_cols=124 Identities=15% Similarity=0.274 Sum_probs=68.8
Q ss_pred CCCcEEEEEcCCC--CCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHH
Q 006659 365 YREDTAVFVSQSG--ETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA 442 (636)
Q Consensus 365 ~~~dlvI~iS~SG--~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~ 442 (636)
..-|++|++...- +.+.....+..++++|+++|.|-.. .++.+..||..|.+..|.+. . +++.++-
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~-~s~ta~~Ad~~l~i~PGtD~-------a----l~lal~~ 222 (512)
T cd02753 155 EEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPR-RTELARFADLHLQLRPGTDV-------A----LLNAMAH 222 (512)
T ss_pred HhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCC-CccchHhhCeeeCCCCCcHH-------H----HHHHHHH
Confidence 3456777765432 2334445667788999999999876 67778899988877554332 1 1112222
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCCC
Q 006659 443 LAIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGYN 501 (636)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~~ 501 (636)
..+. ....+.+..++....++.+ ++.+.+.... .+.++++|+.+... +.+++.|.|..
T Consensus 223 ~l~~-~~~~d~~fv~~~t~gf~~~~~~~~~~t~e~~~~~~gv~~~~i~~lA~~~~~~~~~~i~~g~g~~ 290 (512)
T cd02753 223 VIIE-EGLYDEEFIEERTEGFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAILWGMGVT 290 (512)
T ss_pred HHHH-CCCcCHHHHHHHhhhHHHHHHHHHhCCHHHHHHHhCcCHHHHHHHHHHHHhCCCeEEEeCchhh
Confidence 2222 2112333333333333322 2333332222 46678899988765 46677788754
No 158
>PRK09939 putative oxidoreductase; Provisional
Probab=93.81 E-value=1.3 Score=51.79 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=36.8
Q ss_pred CCcEEEEEc-CCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCC-----------------ccccccCeeEEcCCCC
Q 006659 366 REDTAVFVS-QSGET-ADTLQALEYASENGALCVGITNTVGS-----------------AIARKTHCGVHINAGA 421 (636)
Q Consensus 366 ~~dlvI~iS-~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s-----------------~La~~ad~~l~~~~~~ 421 (636)
.-|++|++. ..+++ +.+...++.++++|+++|+|-....- .-++.||..|.+..|.
T Consensus 208 ~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPGt 282 (759)
T PRK09939 208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGG 282 (759)
T ss_pred hCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCCCh
Confidence 456777764 44543 34566778899999999999664321 1367889888765443
No 159
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=93.46 E-value=2.6 Score=39.91 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHH----------------HHHHhcccccccccccccccccc--ccccCC
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGAL----------------KVKEVALMHSEGILAGEMKHGPL--ALVDEN 539 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~al----------------Kl~E~~~~~a~~~~~~Ef~HGp~--~~~~~~ 539 (636)
+.++..|+.+.+..++++.|+|.++..|.|--- ++.|-+-..+.....+.+.---+ ..+.++
T Consensus 26 kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~~ 105 (243)
T COG4821 26 KAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRPN 105 (243)
T ss_pred HHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHhcCCCC
Confidence 334556777889999999999999999987422 11221111111111111111000 123356
Q ss_pred CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCC--------------------CCcceEEEcCCCCc--
Q 006659 540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFP--------------------GGSCRVIEVPQVED-- 597 (636)
Q Consensus 540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~--------------------~~~~~~~~~p~~~~-- 597 (636)
..++++.+.|.. ..-.+++++.++.|++||++|+-+.+....+ ..+|.++++.+.+-
T Consensus 106 DVliviSnSGrN-pvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~ 184 (243)
T COG4821 106 DVLIVISNSGRN-PVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKV 184 (243)
T ss_pred CEEEEEeCCCCC-CcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCCcccchheeecCccccc
Confidence 667777666543 2235678889999999999997653310000 12344555554322
Q ss_pred -chhhHHHHHHH-HHHHHHHHHHcCCCCCCCCCCc
Q 006659 598 -CLQPVINIVPL-QLLAYHLTVLRGYNVDQPRNLA 630 (636)
Q Consensus 598 -~~~~~~~~v~~-q~la~~lA~~~G~~pd~pr~l~ 630 (636)
+.+-+..++.+ ++++-.+..+-+..-+-|.+++
T Consensus 185 ~ptSt~~g~~ilqa~faeai~~mv~~g~~pPvf~S 219 (243)
T COG4821 185 GPTSTVSGVTILQATFAEAIELMVEKGYTPPVFLS 219 (243)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Confidence 23344455555 5555555555555545555554
No 160
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=92.84 E-value=3.7 Score=46.58 Aligned_cols=123 Identities=15% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCC--HHHHHHHHHHHHc--CCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHH
Q 006659 366 REDTAVFVSQSGET--ADTLQALEYASEN--GALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAML 441 (636)
Q Consensus 366 ~~dlvI~iS~SG~t--~e~i~al~~ak~~--g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL 441 (636)
.-|++|++...... +.....+..++++ |+++|.|-.. .++.+..||..|.+..+.+. . +++.++
T Consensus 157 ~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~-~t~ta~~Ad~~l~i~PGtD~-------a----l~la~~ 224 (565)
T cd02754 157 HADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPR-RTRTADIADLHLPIRPGTDL-------A----LLNGLL 224 (565)
T ss_pred hCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCC-CCcchHHhCeeeCCCCCccH-------H----HHHHHH
Confidence 45667666544322 2334556677777 9999999765 78889999998877554432 1 111222
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCCC
Q 006659 442 ALAIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGYN 501 (636)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~~ 501 (636)
-..+.. ...+.+.+++....++.+ |+.+.+.... .+.++++|+.+... +.+++.|.|..
T Consensus 225 ~~ii~~-~~~d~~fv~~~t~g~~~~~~~~~~~t~e~~a~itgv~~~~I~~lA~~~a~~~~~~i~~g~g~~ 293 (565)
T cd02754 225 HVLIEE-GLIDRDFIDAHTEGFEELKAFVADYTPEKVAEITGVPEADIREAARLFGEARKVMSLWTMGVN 293 (565)
T ss_pred HHHHHC-CCcCHHHHHHHhccHHHHHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 222222 111233233222222222 2333333222 56688999988665 45667788764
No 161
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=92.08 E-value=3.5 Score=47.90 Aligned_cols=123 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred CCcEEEEEcCC--CCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHH
Q 006659 366 REDTAVFVSQS--GETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLAL 443 (636)
Q Consensus 366 ~~dlvI~iS~S--G~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~ 443 (636)
.-|++|++... -+.+.....++.++++|+++|.|-.. .+..+..||..|.+..+.+. . +++.++-.
T Consensus 155 ~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~-~s~ta~~ad~~i~i~Pgtd~-------a----l~lal~~~ 222 (671)
T TIGR01591 155 NADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPR-KTETAKIADLHIPLKPGTDI-------A----LLNAMANV 222 (671)
T ss_pred hCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCcccCCCCCcHH-------H----HHHHHHHH
Confidence 45677666332 22334567778888999999999654 78888899988877554332 1 11222222
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCCCC
Q 006659 444 AIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRGYN 501 (636)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G~~ 501 (636)
.+.... .+.+..++....++.+ |+...+.... .+.++++|+.+...+ .+++.|.|..
T Consensus 223 li~~~~-~d~~f~~~~t~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~~g~g~~ 289 (671)
T TIGR01591 223 IIEEGL-YDKAFIEKRTEGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAILWGMGVT 289 (671)
T ss_pred HHHCCC-cCHHHHHHHhhCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEEecCccc
Confidence 222221 1233333332222222 3333333332 566889999887665 5777787754
No 162
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=91.68 E-value=7.2 Score=36.02 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHH-----HHhccccccccccc---------cccc------cccccccC
Q 006659 479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKV-----KEVALMHSEGILAG---------EMKH------GPLALVDE 538 (636)
Q Consensus 479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl-----~E~~~~~a~~~~~~---------Ef~H------Gp~~~~~~ 538 (636)
....+++-|..-..+...|.|-+++-|+-.+-.| +|--.+|+.+.... +|.+ .--..-.+
T Consensus 30 aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~ 109 (176)
T COG0279 30 AAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQP 109 (176)
T ss_pred HHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCC
Confidence 3455667788889999999999999998665543 34455777776532 2222 22222346
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659 539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQV 595 (636)
Q Consensus 539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~ 595 (636)
+..++-|.+.| ..+.+.+.++..+++|.++++++.++...... -.|..+.+|..
T Consensus 110 GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~--~~D~~i~VPs~ 163 (176)
T COG0279 110 GDVLIGISTSG-NSKNVLKAIEAAKEKGMTVIALTGKDGGKLAG--LLDVEIRVPST 163 (176)
T ss_pred CCEEEEEeCCC-CCHHHHHHHHHHHHcCCEEEEEecCCCccccc--ccceEEecCCC
Confidence 88889998876 56778889999999999999999887543321 24777888964
No 163
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.48 E-value=5.1 Score=45.18 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=59.2
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH------
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA------ 458 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~------ 458 (636)
.++.++++|+++|.|-.. .++.++.||..|.+..|.+ ... ++.++-..+... ..+.+.+++
T Consensus 183 ~~~~a~~~G~kliviDPr-~t~ta~~AD~~l~irPGtD-------~aL----~~a~~~~ii~~~-~~D~~fi~~~t~Gf~ 249 (539)
T cd02762 183 RLKAAKDRGGSLVVIDPR-RTETAKLADEHLFVRPGTD-------AWL----LAAMLAVLLAEG-LTDRRFLAEHCDGLD 249 (539)
T ss_pred HHHHHHhCCCEEEEECCC-CchhhHhcCEeeCcCCCcH-------HHH----HHHHHHHHHHCC-CCChHHHHHHcCcHH
Confidence 567788999999998765 8888999999887755433 221 222222222222 112222222
Q ss_pred -HHHHHhhh-HHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCCCC
Q 006659 459 -IIDGLCDL-PNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRGYN 501 (636)
Q Consensus 459 -~~~~l~~l-~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G~~ 501 (636)
+.+.+... ++.+.+.-.. .+.++++|+.+...+ .+++.|.|..
T Consensus 250 ~~~~~~~~~t~e~~~~~tGv~~~~I~~lA~~~a~~~~~~i~~g~G~~ 296 (539)
T cd02762 250 EVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQ 296 (539)
T ss_pred HHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHhcCCceEEEECcccc
Confidence 22222222 3333433333 577899999887655 5666677754
No 164
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=91.44 E-value=3.2 Score=44.92 Aligned_cols=140 Identities=10% Similarity=0.152 Sum_probs=97.8
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCC-CCCC-cEEEEEcCCCCCHHHHH
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAP-IYRE-DTAVFVSQSGETADTLQ 384 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~-dlvI~iS~SG~t~e~i~ 384 (636)
+.++++++.+..-+..+++|.|-.+..|+..+.....+.-+...-..+.|+.+.+.. ++++ .++.++..--..+....
T Consensus 514 ~~i~~la~~l~~~~slLi~GRGy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~n 593 (670)
T KOG1268|consen 514 PKIKDLAKELKDHKSLLIMGRGYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQN 593 (670)
T ss_pred HHHHHHHHHHhccceEEEecccccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHHH
Confidence 457888889999999999999999999988888777776666666667777766543 3443 34555566677888999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS 451 (636)
Q Consensus 385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~ 451 (636)
+++....++..-|.|++..+..-.+....+|.+|...+ .. .+. -++.=+.+|..+++-.++-
T Consensus 594 a~qQv~aRkG~pIiic~~~~~~~~~~~~~~~~vP~tvD-Cl---Qgi-l~viPlQLlsyhlav~rg~ 655 (670)
T KOG1268|consen 594 AIQQVTARKGRPIIICDKGDKEEQKAGNKTLEVPQTVD-CL---QGI-LNVIPLQLLSYHLAVLRGI 655 (670)
T ss_pred HHHHHHhcCCCeEEEecCCCchhhcccceEEeCCchhh-hh---hhh-hhhhhHHHHHHHHHHHcCC
Confidence 99999998777888888877765555566777765321 11 111 1233456677777655543
No 165
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.12 E-value=5.3 Score=44.26 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=66.2
Q ss_pred CCCcEEEEEcCCC-CC-H-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHH
Q 006659 365 YREDTAVFVSQSG-ET-A-DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAML 441 (636)
Q Consensus 365 ~~~dlvI~iS~SG-~t-~-e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL 441 (636)
..-|++|.+...- .+ + .....+..++++|+++|.|-.. .|..+..||..|.+..+.+. . +++.++
T Consensus 159 ~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr-~s~ta~~Ad~~l~i~PGtD~-------a----l~~al~ 226 (477)
T cd02759 159 ENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPR-LTWLAARADLWLPIRPGTDA-------A----LALGML 226 (477)
T ss_pred hcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCC-CChhhHhhCeeeccCCCcHH-------H----HHHHHH
Confidence 3456766665432 22 2 4455667788899999988765 78889999998877554332 1 111122
Q ss_pred HHHHhcCCCCcHHHHHHH-------HHHHhhh-HHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCCC
Q 006659 442 ALAIGGDTISTQARREAI-------IDGLCDL-PNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRGY 500 (636)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~-------~~~l~~l-~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G~ 500 (636)
...+.. ...+.+..++. .+.+... ++...++... .+.++++|+.+...+ ..++.|.|.
T Consensus 227 ~~i~~~-~~~d~~f~~~~t~g~~~~~~~~~~~t~e~~~~itGv~~~~i~~lA~~~a~~~~~~i~~g~g~ 294 (477)
T cd02759 227 NVIINE-GLYDKDFVENWCYGFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAKPACIQWGLAI 294 (477)
T ss_pred HHHHHC-CCcCHHHHHHHhccHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEcCCcc
Confidence 222222 11122222222 2222221 2333333322 456888998886654 566667664
No 166
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.01 E-value=3.5 Score=45.37 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=38.6
Q ss_pred CCCcEEEEEcCC-CCCH--HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659 365 YREDTAVFVSQS-GETA--DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA 421 (636)
Q Consensus 365 ~~~dlvI~iS~S-G~t~--e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~ 421 (636)
..-|++|++... -++. .....+..++++|+++|.|-.. .++.++.||..|.+..|.
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr-~t~ta~~AD~~i~i~PGt 213 (454)
T cd02755 155 ENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPR-FSELASKADEWIPIKPGT 213 (454)
T ss_pred hcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCEecCCCCCc
Confidence 445677776433 3332 1345566788899999999876 788899999988775543
No 167
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=90.67 E-value=1.4 Score=50.46 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCC-CCH----HHHHHHHHHHHcCCeEEEEEcCCCCcccc-ccCeeEEcCCCC
Q 006659 366 REDTAVFVSQSG-ETA----DTLQALEYASENGALCVGITNTVGSAIAR-KTHCGVHINAGA 421 (636)
Q Consensus 366 ~~dlvI~iS~SG-~t~----e~i~al~~ak~~g~~vi~IT~~~~s~La~-~ad~~l~~~~~~ 421 (636)
.-+++|++...- .|. .....+..||++|+++|.|-.. .++.+. .||..|.+..|.
T Consensus 166 ~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr-~t~tA~~~AD~~i~irPGT 226 (617)
T cd02770 166 DSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPR-YTDTAVTLADEWIPIRPGT 226 (617)
T ss_pred cCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCC-CCccccccCCEEECCCCCc
Confidence 456777765442 221 1235667889999999999776 567775 899988775543
No 168
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=90.37 E-value=5.1 Score=39.83 Aligned_cols=119 Identities=12% Similarity=0.043 Sum_probs=66.3
Q ss_pred HHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE--eeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 006659 314 KTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM--EIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYAS 390 (636)
Q Consensus 314 ~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak 390 (636)
..+.+.+.|+|+|+.... ......+..+. +..... ..+.-|. ........-+++|++.... -..++++|.
T Consensus 66 ~~i~~~~~Il~Vstr~~~--~~~V~k~A~~t-g~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~----d~qAI~EA~ 138 (249)
T PTZ00254 66 AAIENPADVVVVSSRPYG--QRAVLKFAQYT-GASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRT----DHQAIREAS 138 (249)
T ss_pred HHHhCCCcEEEEEcCHHH--HHHHHHHHHHh-CCeEECCcccCCCCCCccccccCCCCEEEEeCCCc----chHHHHHHH
Confidence 445678889999987643 23333333333 322111 1222221 1112234667888876433 347888999
Q ss_pred HcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659 391 ENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI 450 (636)
Q Consensus 391 ~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~ 450 (636)
..|++||+|++. ++++.- .|+.|+++. +|..+.-+++.+|+-.+...++
T Consensus 139 ~lnIPvIal~DT-ds~p~~-VDy~IP~Nd---------ds~~SI~li~~lLar~Vl~~rG 187 (249)
T PTZ00254 139 YVNIPVIALCDT-DSPLEY-VDIAIPCNN---------RGKESIALMYWLLAREVLRLRG 187 (249)
T ss_pred HhCCCEEEEecC-CCCccc-CceeeCCCC---------chHHHHHHHHHHHHHHHHHhhC
Confidence 999999999987 666543 677665432 2333334445555555544433
No 169
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=89.98 E-value=8.2 Score=37.03 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=64.5
Q ss_pred HHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE-Eeeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659 314 KTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVT-MEIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASE 391 (636)
Q Consensus 314 ~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~-~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~ 391 (636)
..+. .++|+|+|...... ...+.+..+.+...+. -..+..+. ........-|++|++.... -..|+++|.+
T Consensus 57 ~~i~-~~~ILfVgtk~~~~--~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~----~~~Av~EA~~ 129 (196)
T TIGR01012 57 VRIE-PEDILVVSARIYGQ--KPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA----DHQALKEASE 129 (196)
T ss_pred HHhh-CCeEEEEecCHHHH--HHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcc----ccHHHHHHHH
Confidence 3444 78999999976532 3344444443222111 11122221 1112235677888875443 3578899999
Q ss_pred cCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCC
Q 006659 392 NGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDT 449 (636)
Q Consensus 392 ~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~ 449 (636)
.|++||+|++. +++. +..|+.|+.+. .|..+.-+++.+|+-.+...+
T Consensus 130 l~IP~Iai~DT-n~dp-~~vdypIP~Nd---------ds~~Si~li~~lla~ail~~~ 176 (196)
T TIGR01012 130 VGIPIVALCDT-DNPL-RYVDLVIPTNN---------KGRHSLALIYWLLAREILRMR 176 (196)
T ss_pred cCCCEEEEeeC-CCCC-ccCCEEECCCC---------chHHHHHHHHHHHHHHHHHhh
Confidence 99999999997 4443 34676664422 233333445555555554443
No 170
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=88.43 E-value=11 Score=36.53 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE-Eeeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCe
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVT-MEIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASENGAL 395 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~-~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~ 395 (636)
+.++|+|+|..... ....+.+..+.+...+. -..+..+. +........|++|++....+ ..|+++|.+.|++
T Consensus 66 ~~~~ILfVgTk~~~--~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~----~~AI~EA~kl~IP 139 (204)
T PRK04020 66 EPEKILVVSSRQYG--QKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGD----AQAVKEAIEVGIP 139 (204)
T ss_pred cCCeEEEEeCCHHH--HHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCccc----HHHHHHHHHhCCC
Confidence 56899999887643 23444444443221111 11122221 11111235688888876544 6788899999999
Q ss_pred EEEEEcCCCCccccccCeeEEc
Q 006659 396 CVGITNTVGSAIARKTHCGVHI 417 (636)
Q Consensus 396 vi~IT~~~~s~La~~ad~~l~~ 417 (636)
||+|++.... . +..|+.|+.
T Consensus 140 ~IaivDTn~d-p-~~VdypIP~ 159 (204)
T PRK04020 140 VVALCDTDNL-T-SNVDLVIPT 159 (204)
T ss_pred EEEEEeCCCC-c-ccCceeECC
Confidence 9999998444 4 457776644
No 171
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.35 E-value=14 Score=40.72 Aligned_cols=56 Identities=25% Similarity=0.221 Sum_probs=37.8
Q ss_pred CCCcEEEEEcCC-CCCH-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659 365 YREDTAVFVSQS-GETA-DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA 421 (636)
Q Consensus 365 ~~~dlvI~iS~S-G~t~-e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~ 421 (636)
..-|++|++... ..+. -....+..+|++|+++|.|-.. .++.++.||..|.+..|.
T Consensus 169 ~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr-~s~ta~~Ad~~l~i~PGt 226 (461)
T cd02750 169 YNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPD-YSPSAKHADLWVPIKPGT 226 (461)
T ss_pred hcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCC-CCcchhhcCEEeccCCCc
Confidence 345677776433 2221 2234456689999999999665 789999999988775543
No 172
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.13 E-value=11 Score=43.40 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=37.3
Q ss_pred CCCcEEEEEc-CCCCC-HHHHHHHHHHHHc-CCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 365 YREDTAVFVS-QSGET-ADTLQALEYASEN-GALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 365 ~~~dlvI~iS-~SG~t-~e~i~al~~ak~~-g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
..-|++|++. ..-++ +-...-+..|+++ |+++|.|-.. .+..+..||..+.+..|.+
T Consensus 168 ~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR-~t~Ta~~AD~~l~irPGTD 227 (649)
T cd02752 168 KNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPR-FTRTAAKADLYVPIRSGTD 227 (649)
T ss_pred hcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCC-CCchhHhcCEeeCcCCChH
Confidence 3456666663 32222 2233445667776 9999999876 7888899999887765443
No 173
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=86.47 E-value=4.7 Score=45.03 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=67.2
Q ss_pred CCcEEEEE-cCCCC-CHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHH
Q 006659 366 REDTAVFV-SQSGE-TADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLAL 443 (636)
Q Consensus 366 ~~dlvI~i-S~SG~-t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~ 443 (636)
.-|++|++ +.... .+.....+..++++|+++|+|-.. .++.++.||..|.+..|.+. . +++.++-.
T Consensus 157 ~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr-~t~ta~~Ad~~l~i~PGtD~-------a----l~~al~~~ 224 (501)
T cd02766 157 NADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPY-RTATAARADLHIQIRPGTDG-------A----LALGVAKV 224 (501)
T ss_pred cCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCC-CCccHHHhCeeeccCCCcHH-------H----HHHHHHHH
Confidence 44566655 33333 334446677799999999998664 88899999998877654332 1 11222222
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCCC
Q 006659 444 AIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGYN 501 (636)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~~ 501 (636)
.+... ..+.+..++....++.+ |+.+.+.... .+.++++|+.+... +.+++.|.|..
T Consensus 225 ii~~~-~~d~~fv~~~t~gf~~~~~~v~~~t~e~~~~~tgv~~~~I~~~A~~~a~~~~~~i~~g~g~~ 291 (501)
T cd02766 225 LFREG-LYDRDFLARHTEGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQ 291 (501)
T ss_pred HHHCC-CccHHHHHHhcCCHHHHHHHHhhCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecchhh
Confidence 22221 11223222222222222 2333333322 56688999988764 45666777754
No 174
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=85.89 E-value=9.9 Score=40.33 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=38.2
Q ss_pred CCcEEEEEcC--CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659 366 REDTAVFVSQ--SGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 366 ~~dlvI~iS~--SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~ 420 (636)
.-|++|.+-. ..+.+.....+..++++|+++|.|... .++.+..+|..+.+..+
T Consensus 156 ~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~-~s~t~~~ad~~i~i~pg 211 (374)
T cd00368 156 NADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPR-RTETAAKADEWLPIRPG 211 (374)
T ss_pred hCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCC-CCcchHhhCEeeCCCCC
Confidence 4566666642 233444566777888899999999886 67788899998877543
No 175
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=85.88 E-value=22 Score=42.90 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=37.6
Q ss_pred CCcEEEEE-cCCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 366 REDTAVFV-SQSGET-ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~i-S~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
.-+++|++ +....| +-....+..|+++|+++|+|-.. -++.++.||..|.+..|.+
T Consensus 224 na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr-~t~tA~~AD~wlpirPGTD 281 (912)
T TIGR03479 224 NADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPD-YNPSTIHADLWLPVRVGTD 281 (912)
T ss_pred cCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCC-CChhhhhCCeecCCCCCcH
Confidence 34555555 333322 22345566788999999999766 7888999999887755443
No 176
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=84.76 E-value=2.8 Score=38.84 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=46.6
Q ss_pred CCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHh
Q 006659 115 NSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHL 194 (636)
Q Consensus 115 n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 194 (636)
+-|-+... +...-.=|.|||..-|+.-...-...-..-+|+|++..++.+. | ..++..-
T Consensus 40 ~~qk~~~~---~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~l----G--------------~~aLsLA 98 (201)
T PF09147_consen 40 PFQKMRFE---RGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRL----G--------------NSALSLA 98 (201)
T ss_dssp -EEEEEET---TEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-------------------GGGGGG-
T ss_pred ceeEEEec---CccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHh----h--------------hhhhhhh
Confidence 34555544 4444455999998777665532222223469999998777643 2 3456666
Q ss_pred hhhhheeEEecCCCCeEEEEEcC
Q 006659 195 EGAYALIFKSQHYPNELIACKRG 217 (636)
Q Consensus 195 ~G~~a~~~~d~~~~~~l~~~Rd~ 217 (636)
+|.|+|.+=++ .++|.+..|+
T Consensus 99 EGdfcffiE~k--ng~L~l~Tds 119 (201)
T PF09147_consen 99 EGDFCFFIEDK--NGELTLITDS 119 (201)
T ss_dssp -SSEEEEEEET--TSEEEEEE-S
T ss_pred cCceEEEEecC--CCcEEEEecC
Confidence 89999988775 5899999998
No 177
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.74 E-value=6.3 Score=45.17 Aligned_cols=106 Identities=12% Similarity=0.195 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCccccccC-eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHH--
Q 006659 383 LQALEYASENGALCVGITNTVGSAIARKTH-CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAI-- 459 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad-~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~-- 459 (636)
...+..+|++|+++|+|-.. .++.++.|| ..|.+..|.+ ...+ +.++-..+... .-+.+.+++.
T Consensus 198 ~~~~~~ar~~GaklIvIDPr-~t~tA~~add~~l~irPGTD-------~ALa----lam~~~ii~e~-~~D~~Fv~~~t~ 264 (609)
T cd02769 198 YSYLKALKDRGIRFISISPL-RDDTAAELGAEWIAIRPGTD-------VALM----LALAHTLVTEG-LHDKAFLARYTV 264 (609)
T ss_pred HHHHHHHHhCCCEEEEEcCC-CCcchhhhcCcEeccCCCcH-------HHHH----HHHHHHHHHcC-CccHHHHHHHcc
Confidence 45667889999999999886 777888776 6776654333 2221 12222222221 1123333332
Q ss_pred -----HHHHh-------hhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCC
Q 006659 460 -----IDGLC-------DLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYN 501 (636)
Q Consensus 460 -----~~~l~-------~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~ 501 (636)
.+.+. .-|+.+.++... .+.++++|+.+...+.+++.|.|..
T Consensus 265 Gfe~~~~~l~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~~~~~i~~g~g~~ 319 (609)
T cd02769 265 GFDKFLPYLLGESDGVPKTPEWAAAICGIPAETIRELARRFASKRTMIMAGWSLQ 319 (609)
T ss_pred CHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhhcCcEEEecccch
Confidence 22332 234444444333 6788999999877667777787754
No 178
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=83.01 E-value=8.8 Score=45.37 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccc-cCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHH-
Q 006659 382 TLQALEYASENGALCVGITNTVGSAIARK-THCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAI- 459 (636)
Q Consensus 382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~-ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~- 459 (636)
....++.+|++|+++|+|-.. -++.++. +|..|.+..|.+ ... ++.++-..+... .-+.+.+++.
T Consensus 193 ~~~~~~~a~~~G~klIvIDPr-~t~tA~~aaD~~l~irPGTD-------~AL----~lam~~~ii~e~-l~D~~fi~~~t 259 (770)
T TIGR00509 193 GYEYLERLKAKGKRVISIDPV-RTETAEFFGAEWIPPNPQTD-------VAL----MLGLAHTLVTEG-LYDKDFLAKYT 259 (770)
T ss_pred hHHHHHHHHHcCCEEEEEcCC-CCcchhhccCeEeCcCCCcH-------HHH----HHHHHHHHHHcc-cccHHHHHHHc
Confidence 346677889999999999876 6777776 588887755433 221 122222222221 1123333322
Q ss_pred ------HHHHh-------hhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCC
Q 006659 460 ------IDGLC-------DLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYN 501 (636)
Q Consensus 460 ------~~~l~-------~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~ 501 (636)
.+.+. .-|+.+.+..-. .+.++++|+.+...+..++.|.|..
T Consensus 260 ~gfe~~~~~l~~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~~~~~i~~g~g~~ 315 (770)
T TIGR00509 260 SGFEKFLPYLLGETDGTPKTAEWASKITGVPAETIKELARLFASKRTMLAAGWSMQ 315 (770)
T ss_pred ccHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhccceeeccchhh
Confidence 22221 234444444433 6778999998877666667777743
No 179
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=82.90 E-value=29 Score=42.23 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=39.8
Q ss_pred CCcEEEEEc-CCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 366 REDTAVFVS-QSGET-ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~iS-~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
.-|++|++. ...++ +-....+..||++|+++|+|-.. .++.++.||..|.+..|.+
T Consensus 221 ~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR-~t~tA~~AD~~l~irPGTD 278 (1009)
T TIGR01553 221 NSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPR-FNRTATVADLYAPIRSGSD 278 (1009)
T ss_pred hCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCC-CCchhHhhccEeCCCCChH
Confidence 456776664 33433 33456667889999999999665 7889999999887765443
No 180
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=82.57 E-value=39 Score=40.31 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCC-CCH-HHHHHHHHHH--HcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 366 REDTAVFVSQSG-ETA-DTLQALEYAS--ENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~iS~SG-~t~-e~i~al~~ak--~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
.-+++|++.... .+. -...-+..++ ++|+++|.|-.. .++.++.||..|.+..|.+
T Consensus 206 ~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr-~t~ta~~ad~~l~irPGtD 265 (830)
T PRK13532 206 AADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTF-EHRSFELADNGIIFTPQTD 265 (830)
T ss_pred hCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCC-CCchhHhcCeeeccCCCCc
Confidence 456777775443 321 1112222233 479999999655 6888999999887765544
No 181
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=80.85 E-value=5 Score=43.08 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=23.8
Q ss_pred ceEEEEEecccccchhhHHHHHHHHHHhccccC
Q 006659 2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRG 34 (636)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG 34 (636)
|||--+.+.++..+ -+....-+.+|..|.|||
T Consensus 1 CGvG~va~~~g~~s-h~iv~~al~~L~~m~HRG 32 (413)
T cd00713 1 CGVGFVANIDGKPS-HDIVQDALEALERMEHRG 32 (413)
T ss_pred CeEEEEEECCCCch-HHHHHHHHHHHhhCcCCC
Confidence 99966666665433 345677788999999999
No 182
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=80.64 E-value=78 Score=33.13 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=61.6
Q ss_pred ccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcC----CcEEEee-ccch-hcc----cC----CCCCCcEEE
Q 006659 306 LGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSD----LPVTMEI-ASDL-VDR----QA----PIYREDTAV 371 (636)
Q Consensus 306 ~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~----~~~~~~~-~~e~-~~~----~~----~~~~~dlvI 371 (636)
.++++++++.|.++++..++|.+++..=|+.+.--+....+ -...+.. ++-. ... .. .-+..|++|
T Consensus 66 deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gaviD~~asvchGp~~~alqe~g~p~~TlgevKNraDviV 145 (429)
T COG1029 66 DEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIV 145 (429)
T ss_pred HHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEecCCCccccchHHHHHHhcCCcccchhhhcccccEEE
Confidence 35678899999999999999999887666554433333222 1111111 1111 000 01 123556666
Q ss_pred EEcCCCCCHHHHHHHH-------HHHHcC--CeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659 372 FVSQSGETADTLQALE-------YASENG--ALCVGITNTVGSAIARKTHCGVHINAGA 421 (636)
Q Consensus 372 ~iS~SG~t~e~i~al~-------~ak~~g--~~vi~IT~~~~s~La~~ad~~l~~~~~~ 421 (636)
.--...--.-.-.+-+ ..+++| =+++.+.+-..++-+++||.++.+..+.
T Consensus 146 yWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~s 204 (429)
T COG1029 146 YWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNS 204 (429)
T ss_pred EeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCC
Confidence 4322111111111111 122332 3455555666899999999999886543
No 183
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=78.34 E-value=56 Score=32.39 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=43.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHh
Q 006659 367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIG 446 (636)
Q Consensus 367 ~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~ 446 (636)
.|++|++- +..=-.|+++|++.|+|||+|.++..+| ...|+.|+.+. .+.-+.-+++.+|+-.+.
T Consensus 157 Pd~l~ViD----p~~e~iAv~EA~klgIPVvAlvDTn~dp--d~VD~~IP~Nd---------da~rsi~Li~~~lA~ai~ 221 (252)
T COG0052 157 PDVLFVID----PRKEKIAVKEANKLGIPVVALVDTNCDP--DGVDYVIPGND---------DAIRSIALIYWLLARAIL 221 (252)
T ss_pred CCEEEEeC----CcHhHHHHHHHHHcCCCEEEEecCCCCC--ccCceeecCCC---------hHHHHHHHHHHHHHHHHH
Confidence 57777773 4455678899999999999999975553 45787775433 222233344455555554
Q ss_pred cCC
Q 006659 447 GDT 449 (636)
Q Consensus 447 ~~~ 449 (636)
..+
T Consensus 222 e~r 224 (252)
T COG0052 222 EGR 224 (252)
T ss_pred HHh
Confidence 443
No 184
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=78.01 E-value=28 Score=41.03 Aligned_cols=55 Identities=22% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCcEEEEEcCC-CCC-H-HHHHHHHHHH-HcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659 366 REDTAVFVSQS-GET-A-DTLQALEYAS-ENGALCVGITNTVGSAIARKTHCGVHINAGA 421 (636)
Q Consensus 366 ~~dlvI~iS~S-G~t-~-e~i~al~~ak-~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~ 421 (636)
.-|++|++..- ..+ + .....+..++ ++|+++|.|-.. .++.+..||..|.+..|.
T Consensus 196 ~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr-~s~ta~~Ad~~l~i~PGt 254 (759)
T PRK15488 196 NSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPR-FSVVASKADEWHAIRPGT 254 (759)
T ss_pred hCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCC-CCcchhhCCeeeccCCCc
Confidence 45666666422 221 1 1224344555 789999999765 788899999988775543
No 185
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.90 E-value=18 Score=41.51 Aligned_cols=105 Identities=20% Similarity=0.272 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCcccc-ccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHH--
Q 006659 383 LQALEYASENGALCVGITNTVGSAIAR-KTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAI-- 459 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~~~~s~La~-~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~-- 459 (636)
...+..++++|+++|.|-.. .|+.+. .||..|.+..|.+. . +++.++-..+... ..+.+.+++.
T Consensus 196 ~~~~~~a~~~GakiivIDPr-~s~ta~~~AD~~l~irPGtD~-------a----L~lam~~~ii~~~-~~D~~fi~~~t~ 262 (609)
T cd02751 196 YYYLKQAKDAGVRFICIDPR-YTDTAAVLAAEWIPIRPGTDV-------A----LMLAMAHTLITED-LHDQAFLARYTV 262 (609)
T ss_pred HHHHHHHHHCCCeEEEECCC-CCccccccCCEEECCCCCcHH-------H----HHHHHHHHHHHCc-chhHHHHHHHcc
Confidence 35667789999999999665 677776 79988877554332 1 1122222222211 1122222222
Q ss_pred -----HHHHh-------hhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCC
Q 006659 460 -----IDGLC-------DLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGY 500 (636)
Q Consensus 460 -----~~~l~-------~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~ 500 (636)
.+.+. .-|+.+.++... .+.++++|+.+...+.+++.|.|.
T Consensus 263 gfe~~~~~l~g~~dg~~~tpe~aa~itGv~~~~I~~lA~~~a~~~~~i~~g~g~ 316 (609)
T cd02751 263 GFDEFKDYLLGESDGVPKTPEWAAEITGVPAETIRALAREIASKRTMIAQGWGL 316 (609)
T ss_pred CcHHHHHHhccCCCCccCCHHHHHHHHCcCHHHHHHHHHHHhcCCcEEeccchH
Confidence 22221 123334333333 566888998887655677777763
No 186
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=76.45 E-value=36 Score=38.16 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=60.2
Q ss_pred CCcEEEEEcCC-CCCH----HHHHHHHHHHHcC-----CeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHH
Q 006659 366 REDTAVFVSQS-GETA----DTLQALEYASENG-----ALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQI 435 (636)
Q Consensus 366 ~~dlvI~iS~S-G~t~----e~i~al~~ak~~g-----~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~ 435 (636)
.-+++|++... -++. .....+..+|++| +++|+|-.. .+..+..||..|.+..+.+. ..
T Consensus 196 ~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr-~s~ta~~Ad~~l~irPGtD~-------al--- 264 (524)
T cd02764 196 KAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESV-YTLTGANADVRLAIRPSQEK-------AF--- 264 (524)
T ss_pred HCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecC-CCchhhhhcceeccCcccHH-------HH---
Confidence 44666666443 2221 1234445566655 488888765 78888899998877543332 11
Q ss_pred HHHHHHHHHHhcCCC-CcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCCC
Q 006659 436 VVMAMLALAIGGDTI-STQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGYN 501 (636)
Q Consensus 436 ~~l~lL~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~~ 501 (636)
++.++-..+..... ...+.+.+.... .-|+.+.+.... .+.++++|+.+... +.+++.|.|..
T Consensus 265 -~lam~~~ii~~~~~d~d~~f~~~~~~~--~tpe~aa~itgv~~~~I~~lA~~~a~~~~~~i~~G~g~~ 330 (524)
T cd02764 265 -ALGLAHKLIKKGAGSSLPDFFRALNLA--FKPAKVAELTVDLDKALAALAKALAAAGKSLVVAGSELS 330 (524)
T ss_pred -HHHHHHHHhhccccccchhhhhhhhcc--cCcccccccccchHHHHHHHHHHHHhcCCcEEEECCCCC
Confidence 11111122211110 011111111111 112222222222 56688889888654 46777788765
No 187
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.88 E-value=22 Score=38.35 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=58.1
Q ss_pred cchHHHHHHHcCCCeEEEEeechhHH-HHHHHHHHHHHhcCCcEEE-----eeccch-hc----ccCC---C-CCCcEEE
Q 006659 307 GGLKDHLKTIRRSRRIVFIGCGTSYN-AALAARPILEELSDLPVTM-----EIASDL-VD----RQAP---I-YREDTAV 371 (636)
Q Consensus 307 ~~l~~~~~~l~~~~~I~i~G~G~S~~-aa~~~~~~~~~~~~~~~~~-----~~~~e~-~~----~~~~---~-~~~dlvI 371 (636)
+.++.+++.|+++++..++|.|++.. ....++.++..++. .+.. ..+... .. .... + .+-|++|
T Consensus 58 eAl~~ia~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il 136 (415)
T cd02761 58 EAIEKAAEILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGA-IIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADVIV 136 (415)
T ss_pred HHHHHHHHHHHhhcCCEEEEcccchHHHHHHHHHHHHHHCC-CccccccccccchHHHHHhCCCccccHHHHHhcCCEEE
Confidence 45566777777776667777776643 22334445554432 1110 000000 00 0011 2 2467777
Q ss_pred EEcCC-CCC-HHHH-HHHH-------HHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 372 FVSQS-GET-ADTL-QALE-------YASENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 372 ~iS~S-G~t-~e~i-~al~-------~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
++-.. -.| +... .... .++++|+++|.|-. ..++.++.||..+.+..+.+
T Consensus 137 ~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp-~~t~ta~~Ad~~l~i~pgtd 196 (415)
T cd02761 137 YWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDP-RKSDTAKLADIHLQIDPGSD 196 (415)
T ss_pred EEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcC-CCcchhhhcceEEecCCCCc
Confidence 77433 222 2222 1111 12257888888855 57888999999887765433
No 188
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=75.71 E-value=79 Score=37.77 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHH--HcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 366 REDTAVFVSQSGETADTL--QALEYAS--ENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i--~al~~ak--~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
.-|++|++.........+ .-+..++ ++|+++|.|-.. .++.+..||..|.+..|.+
T Consensus 206 ~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr-~t~ta~~Ad~~l~irPGTD 265 (830)
T TIGR01706 206 AADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTF-THRSFDLADIGIIFKPQTD 265 (830)
T ss_pred hCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCC-CCchhHHhCeeeccCCCCH
Confidence 456777775443221111 2233334 469999988654 7778889999887765443
No 189
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=75.38 E-value=43 Score=33.74 Aligned_cols=68 Identities=22% Similarity=0.088 Sum_probs=43.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHH
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAI 445 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~ 445 (636)
..|++|++...-+ ..|+++|...|++||+|.+... +.. ..|+.|+... .|..+.-+++.+|+-.+
T Consensus 157 ~Pd~iii~d~~~~----~~ai~Ea~kl~IPiIaivDTn~-dp~-~IdypIP~Nd---------ds~~si~li~~~l~~ai 221 (258)
T PRK05299 157 LPDALFVVDPNKE----HIAVKEARKLGIPVVAIVDTNC-DPD-GVDYPIPGND---------DAIRSIKLYTSKIADAI 221 (258)
T ss_pred CCCEEEEeCCCcc----HHHHHHHHHhCCCEEEEeeCCC-CCc-ccceeeecCC---------chHHHHHHHHHHHHHHH
Confidence 5788888876543 3788899999999999998844 433 5677665433 23333344455555544
Q ss_pred hcC
Q 006659 446 GGD 448 (636)
Q Consensus 446 ~~~ 448 (636)
...
T Consensus 222 ~~g 224 (258)
T PRK05299 222 LEG 224 (258)
T ss_pred HHH
Confidence 433
No 190
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=75.36 E-value=58 Score=32.11 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcC
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHIN 418 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~ 418 (636)
..|++|++...-+ ..|+++|...|++||+|.+.... . ...|+.|+..
T Consensus 155 ~Pd~vii~d~~~~----~~ai~Ea~~l~IP~I~ivDTn~~-p-~~idypIP~N 201 (225)
T TIGR01011 155 LPDLLFVIDPVKE----KIAVAEARKLGIPVVAIVDTNCD-P-DLVDYPIPGN 201 (225)
T ss_pred CCCEEEEeCCCcc----HHHHHHHHHcCCCEEEEeeCCCC-C-cccceeeecC
Confidence 5788888876533 46788999999999999997444 3 3577776553
No 191
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.34 E-value=46 Score=37.38 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=37.2
Q ss_pred CCCcEEEEEcCCC-CC-HHHH--HHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 365 YREDTAVFVSQSG-ET-ADTL--QALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 365 ~~~dlvI~iS~SG-~t-~e~i--~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
..-+++|+++... .| ..+. .-+..++++|+++|+|-.. .+..+..||..|.+..|.+
T Consensus 161 ~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr-~s~ta~~AD~~l~i~PGtD 221 (523)
T cd02757 161 ANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPR-LSNTAAKADEWLPIKPGED 221 (523)
T ss_pred hcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCC-CChhhHhcCEeeCCCCCcH
Confidence 4557777776443 21 1121 3344567899999999665 6778888999887755433
No 192
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=74.55 E-value=82 Score=30.15 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=34.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHI 417 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~ 417 (636)
..-|++|++....+ ..++++|...|+|+|+|.+... --+..|+.|+.
T Consensus 126 ~~Pdlviv~~~~~~----~~ai~Ea~~l~IP~I~i~Dtn~--~~~~i~ypIP~ 172 (193)
T cd01425 126 RLPDLVIVLDPRKE----HQAIREASKLGIPVIAIVDTNC--DPDLIDYPIPA 172 (193)
T ss_pred cCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEecCCC--CCccceEEeec
Confidence 46788888875433 5788899999999999998743 23456666654
No 193
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=74.35 E-value=33 Score=31.75 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCC--CCccccccCeeEEcCC
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTV--GSAIARKTHCGVHINA 419 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~--~s~La~~ad~~l~~~~ 419 (636)
..=|.++.+|-.| +-..+++++|++|..|+++.... ..+|.+.||..+++..
T Consensus 104 ~~iD~~vLvSgD~---DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~~ 157 (160)
T TIGR00288 104 PNIDAVALVTRDA---DFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILGE 157 (160)
T ss_pred CCCCEEEEEeccH---hHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCCC
Confidence 3457888888666 56677788999999999999542 3368899999888854
No 194
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=73.93 E-value=21 Score=32.93 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=66.8
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhccc--CC-----CCCCcEEEEEcCCCCCHHH
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ--AP-----IYREDTAVFVSQSGETADT 382 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~-----~~~~dlvI~iS~SG~t~e~ 382 (636)
++++..|.+ +-.+++|.+....+|.-++.-++...+.++.....-|+.+.. .. .....-+|++.-+.+.+.+
T Consensus 9 k~LA~~L~~-~~Pvi~~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~~~~~~ 87 (155)
T PF10432_consen 9 KRLALELAG-RIPVIYGSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPEDHPRV 87 (155)
T ss_dssp HHHHHHHTT-SEEEEEECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TCCHHHH
T ss_pred HHHHHHHcC-CCcEEEECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCCccccc
Confidence 566667776 677888888888889999999999889998887766664321 11 1234456666666666666
Q ss_pred HHHHHHH----HHcCCeEEEEEcCCCCccccccCe
Q 006659 383 LQALEYA----SENGALCVGITNTVGSAIARKTHC 413 (636)
Q Consensus 383 i~al~~a----k~~g~~vi~IT~~~~s~La~~ad~ 413 (636)
...++.. +++|+.++-|....+|+|.+++..
T Consensus 88 ~~r~~~~~e~~~~~~~~v~~v~~~g~s~l~rl~~l 122 (155)
T PF10432_consen 88 QRRVEITREIAEDRGVRVIEVEAEGGSPLERLASL 122 (155)
T ss_dssp HHHHHHHHHHHTTCSSEEEEE--SCCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhcCCcEEEEecCCCCHHHHHHHH
Confidence 4444444 456999999999988888887553
No 195
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=73.92 E-value=6.8 Score=41.57 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=52.3
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhcC--CcEEEe---eccchhcccCCCCC-CcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELSD--LPVTME---IASDLVDRQAPIYR-EDTAVFVSQSGETADTLQALEYASE 391 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~--~~~~~~---~~~e~~~~~~~~~~-~dlvI~iS~SG~t~e~i~al~~ak~ 391 (636)
....|+=+|.|+|.-.-.+....+..... ..+... ++.+.......+++ .+|+|++|-++.|.||+..++.||+
T Consensus 149 ~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaetak~ 228 (546)
T KOG2446|consen 149 KITDVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETAKE 228 (546)
T ss_pred eeeeEEEecccccccchHHHHHhhccCCCCCceEEEEecCCchhHHHHHhccCccceEEEEEecCcCcHHHHhhHHHHHH
Confidence 45679999999997666666666666652 444433 33333333444554 6789999999999999999998887
No 196
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=72.80 E-value=27 Score=37.85 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=36.9
Q ss_pred CCCcEEEEEcCCCC--CHHH-HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659 365 YREDTAVFVSQSGE--TADT-LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA 421 (636)
Q Consensus 365 ~~~dlvI~iS~SG~--t~e~-i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~ 421 (636)
..-|++|.+..... ..-. ....+.++++|+++|.|... .++.+..||..|.+..+.
T Consensus 110 ~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~-~t~~a~~ad~~i~i~PGt 168 (432)
T PF00384_consen 110 ENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPR-RTPTAAKADEWIPIRPGT 168 (432)
T ss_dssp GH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESS-B-HHGGGTSEEEEE-TTT
T ss_pred eccceEEEcccCccccccccccccccccccCCcceEEEEec-cchhhhhccccccccccc
Confidence 34566776654322 2223 45667788999999999987 777899999999886543
No 197
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=71.54 E-value=30 Score=37.31 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=23.1
Q ss_pred HcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 391 ENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 391 ~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
++|+++|.|-. ..++.+..||..+.+..+.+
T Consensus 172 ~~g~~lividp-~~s~t~~~ad~~l~i~pgtd 202 (421)
T TIGR03129 172 REDRTVIVVDP-RKTDTAKLADYHLQIKPGSD 202 (421)
T ss_pred cCCCEEEEECC-CCCCcchhhcceeccCCCCc
Confidence 67888888855 57888889999887765443
No 198
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=69.29 E-value=43 Score=38.00 Aligned_cols=56 Identities=29% Similarity=0.202 Sum_probs=39.2
Q ss_pred CCcEEEEEcCC-CCC-HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 366 REDTAVFVSQS-GET-ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~iS~S-G~t-~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
.-|++|++... ..+ +-....+..+|++|+++|.|-.. .++.++.||..|.+..|.+
T Consensus 159 ~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr-~s~ta~~Ad~~l~irPGTD 216 (567)
T cd02765 159 NAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPV-YSTTAAKADQWVPIRPGTD 216 (567)
T ss_pred cCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCC-CCcchhhcCEEeccCCCch
Confidence 45666666444 222 23456667889999999999765 7889999999887765443
No 199
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=66.18 E-value=1.2e+02 Score=32.65 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=66.8
Q ss_pred cCCcEEEeeccchhcccCCCCCCcEEEEE-cCC---CCCHHHHHHHHHHHHcCCeEEEEEcCC-CC-----ccccccCee
Q 006659 345 SDLPVTMEIASDLVDRQAPIYREDTAVFV-SQS---GETADTLQALEYASENGALCVGITNTV-GS-----AIARKTHCG 414 (636)
Q Consensus 345 ~~~~~~~~~~~e~~~~~~~~~~~dlvI~i-S~S---G~t~e~i~al~~ak~~g~~vi~IT~~~-~s-----~La~~ad~~ 414 (636)
.++.+...++.+.......+++++-+|.+ |-+ .+..++-++.+.|+++| .++.|.++. .+ ||.--||++
T Consensus 118 ~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~GaDiv 196 (386)
T PF01053_consen 118 FGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELGADIV 196 (386)
T ss_dssp TTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT-SEE
T ss_pred cCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCCceEE
Confidence 36666666665442222224445544444 433 25678888999999998 233333332 34 445458987
Q ss_pred EEcCCCCcccccc--------hhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHH
Q 006659 415 VHINAGAEIGVAS--------TKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQ 486 (636)
Q Consensus 415 l~~~~~~e~~~~~--------t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~ 486 (636)
+.-.. +-.+..+ ++.-....-.+......++.. ....+.--+.+.++.++..+++.- +-+.++|+.
T Consensus 197 v~S~T-Kyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~--~~p~da~ll~rgl~Tl~~R~~~~~---~nA~~lA~~ 270 (386)
T PF01053_consen 197 VHSAT-KYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGAT--LSPFDAWLLLRGLRTLPLRMERQN---ENAEALAEF 270 (386)
T ss_dssp EEETT-TTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B----HHHHHHHHHHHTTHHHHHHHHH---HHHHHHHHH
T ss_pred Eeecc-ccccCCcceeeEEEEECchhhhhhhhcchhhhcCcc--chHHHHHHHhcCCCcHHHHHHHHH---HHHHHHHHH
Confidence 75433 2111101 111011111111112222221 133444556777888877776544 445677887
Q ss_pred hcCCCeE
Q 006659 487 LIAEQSL 493 (636)
Q Consensus 487 l~~~~~~ 493 (636)
|...+.+
T Consensus 271 L~~hp~V 277 (386)
T PF01053_consen 271 LEEHPKV 277 (386)
T ss_dssp HHTSTTE
T ss_pred HHhCCCC
Confidence 7776533
No 200
>CHL00067 rps2 ribosomal protein S2
Probab=65.73 E-value=32 Score=34.04 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcC
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHIN 418 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~ 418 (636)
..|++|++....+. .|+++|...|+++|+|.+...+| .. .|+.|+..
T Consensus 161 ~P~~iiv~d~~~~~----~ai~Ea~~l~IPvIaivDTn~~p-~~-idypIP~N 207 (230)
T CHL00067 161 LPDIVIIIDQQEEY----TALRECRKLGIPTISILDTNCDP-DL-ADIPIPAN 207 (230)
T ss_pred CCCEEEEeCCcccH----HHHHHHHHcCCCEEEEEeCCCCc-cc-cceeeecC
Confidence 46678887766543 78899999999999999984443 33 57776553
No 201
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=65.39 E-value=42 Score=31.22 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=53.1
Q ss_pred HHHHHHHcCCC-eEEEEeechh-HHHHHHHHHHHHHhcCCcEEEeecc--------------ch---hc---cc--CCC-
Q 006659 310 KDHLKTIRRSR-RIVFIGCGTS-YNAALAARPILEELSDLPVTMEIAS--------------DL---VD---RQ--API- 364 (636)
Q Consensus 310 ~~~~~~l~~~~-~I~i~G~G~S-~~aa~~~~~~~~~~~~~~~~~~~~~--------------e~---~~---~~--~~~- 364 (636)
+++++.|++++ .++++|.|.. ..+...+..+.+++ ++++...... .. .. .+ ..+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEkl-giPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~ 96 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKF-DLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFD 96 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHH-CCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhcc
Confidence 44556666665 5666788875 45667777777775 6776654422 00 00 00 012
Q ss_pred --CCCcEEEEEcCC-CCCHHHHHHHHHHHHcCCeEEEEEc
Q 006659 365 --YREDTAVFVSQS-GETADTLQALEYASENGALCVGITN 401 (636)
Q Consensus 365 --~~~dlvI~iS~S-G~t~e~i~al~~ak~~g~~vi~IT~ 401 (636)
.+-|++|++-.. =.+..++..+|... ..++|+|..
T Consensus 97 g~g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~ 134 (162)
T TIGR00315 97 GEGNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDK 134 (162)
T ss_pred CCCCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecC
Confidence 567888877443 34555777777555 588998874
No 202
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=62.68 E-value=66 Score=37.36 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCC--CHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659 366 REDTAVFVSQSGE--TADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 366 ~~dlvI~iS~SG~--t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~ 420 (636)
.-+++|.+..... +.-+...+..+|++|+++|.|-.. .+..+..||..|.+..|
T Consensus 155 ~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr-~t~ta~~AD~wl~irPG 210 (679)
T cd02763 155 HTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPV-RTGYAAIADEWVPIKPG 210 (679)
T ss_pred hCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCc-CCcchHhhCeecCcCCC
Confidence 4566666643221 111334566788899999999655 77788999998876543
No 203
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=62.43 E-value=2.4e+02 Score=33.55 Aligned_cols=52 Identities=17% Similarity=-0.012 Sum_probs=31.7
Q ss_pred CCCcEEEEE-cCCCCCHH-HHHHHHHH-HHcCCeEEEEEcCCCCccccccCeeEE
Q 006659 365 YREDTAVFV-SQSGETAD-TLQALEYA-SENGALCVGITNTVGSAIARKTHCGVH 416 (636)
Q Consensus 365 ~~~dlvI~i-S~SG~t~e-~i~al~~a-k~~g~~vi~IT~~~~s~La~~ad~~l~ 416 (636)
..-|++|++ |...++.- +-..++.| +++|+++|.|-......+.+.++..+.
T Consensus 369 ~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~ 423 (819)
T PRK08493 369 KTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFC 423 (819)
T ss_pred hhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceE
Confidence 345666666 54444333 33455556 458999998888766666776654433
No 204
>PRK10637 cysG siroheme synthase; Provisional
Probab=62.30 E-value=2.5e+02 Score=30.93 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=44.3
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeecc---chh---------cccCCCCC---CcEEEEEcCCCCCHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIAS---DLV---------DRQAPIYR---EDTAVFVSQSGETADT 382 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~---e~~---------~~~~~~~~---~dlvI~iS~SG~t~e~ 382 (636)
+.++|+++|.|.-. ..-++.++.. +-.+.+..+. ++. +......+ ++..+++..+++..--
T Consensus 11 ~~~~vlvvGgG~vA--~rk~~~ll~~--ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n 86 (457)
T PRK10637 11 RDRDCLLVGGGDVA--ERKARLLLDA--GARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVN 86 (457)
T ss_pred CCCEEEEECCCHHH--HHHHHHHHHC--CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHh
Confidence 45899999998763 3334444432 3333333221 110 11111111 2345666677777777
Q ss_pred HHHHHHHHHcCCeEEEEEc
Q 006659 383 LQALEYASENGALCVGITN 401 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~ 401 (636)
-+..+.|+++|..+-..++
T Consensus 87 ~~i~~~a~~~~~lvN~~d~ 105 (457)
T PRK10637 87 QRVSEAAEARRIFCNVVDA 105 (457)
T ss_pred HHHHHHHHHcCcEEEECCC
Confidence 7888899998876655444
No 205
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=61.59 E-value=68 Score=33.56 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccc-c-cC------------CCCe
Q 006659 477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLAL-V-DE------------NLPI 542 (636)
Q Consensus 477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~-~-~~------------~~~v 542 (636)
++.+++.|+-|.++++-.+.|.+..-.-|++.++++.|-.. |...+-..+.|||..+ + +. +--|
T Consensus 66 deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~g--aviD~~asvchGp~~~alqe~g~p~~TlgevKNraDv 143 (429)
T COG1029 66 DEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLG--AVIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADV 143 (429)
T ss_pred HHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhC--cEecCCCccccchHHHHHHhcCCcccchhhhcccccE
Confidence 45566677778888888888988889999999999999654 5667778999999864 2 21 1234
Q ss_pred EEEEeCCcchH---HHHH---HHHH-HHhcC---CeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHH
Q 006659 543 LVIATRDACFS---KQQS---VIQQ-LHARK---GRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612 (636)
Q Consensus 543 i~l~~~~~~~~---~~~~---~~~~-~~~~g---~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la 612 (636)
+++-+.++... ++.+ +.+- .+.+| ..+|+|+-.....- ..+|..++++...+ .++++
T Consensus 144 iVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TA---klad~~~qi~p~sD----------yelis 210 (429)
T COG1029 144 IVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATA---KLADNHVQIKPNSD----------YELIS 210 (429)
T ss_pred EEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchh---hhhhheEecCCCCc----------HHHHH
Confidence 55554444322 2222 1111 13343 35777776654311 12466777764332 45677
Q ss_pred HHHHHHcCCCCCCC
Q 006659 613 YHLTVLRGYNVDQP 626 (636)
Q Consensus 613 ~~lA~~~G~~pd~p 626 (636)
..++...|..|-.|
T Consensus 211 Al~~~l~G~~~~~~ 224 (429)
T COG1029 211 ALRAALHGKEPHRS 224 (429)
T ss_pred HHHHHhcCCCCCCc
Confidence 77888888877654
No 206
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=60.79 E-value=75 Score=37.94 Aligned_cols=103 Identities=11% Similarity=0.106 Sum_probs=55.1
Q ss_pred HHHHHHc-CCeEEEEEcCCCCccccc-cCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH---
Q 006659 386 LEYASEN-GALCVGITNTVGSAIARK-THCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAII--- 460 (636)
Q Consensus 386 l~~ak~~-g~~vi~IT~~~~s~La~~-ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~--- 460 (636)
++.++++ |+++|+|-.. -++.++. +|..|.+..| |.... ++.++-..+... ..+.+.+++..
T Consensus 246 ~~~~~~~~gaklIvIDPr-~t~tA~~a~~~~l~irPG-------TD~AL----~lam~~~ii~e~-l~D~~Fv~~~t~Gf 312 (825)
T PRK15102 246 LKEKVAKGEINVISIDPV-VTKTQNYLGCEHLYVNPQ-------TDVPL----MLALAHTLYSEN-LYDKKFIDNYCLGF 312 (825)
T ss_pred HHHHhhcCCCEEEEECCC-CCchhhhccCceecccCC-------cHHHH----HHHHHHHHHHCC-cccHHHHHHHccCH
Confidence 3344344 7999999886 6777776 4556665443 32221 222222222221 12333333332
Q ss_pred ----HHHh-------hhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCC
Q 006659 461 ----DGLC-------DLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYN 501 (636)
Q Consensus 461 ----~~l~-------~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~ 501 (636)
+.+. .-|+.+.++.-. .+.++++|+.+...+..++.|.|..
T Consensus 313 d~~~~~l~g~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~~~~~i~~g~g~~ 365 (825)
T PRK15102 313 EQFLPYLLGEKDGVPKTPEWAEKICGIDAETIRELARQMAKGRTQIIAGWCIQ 365 (825)
T ss_pred HHHHHHhcccccCCcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCEEEEeechh
Confidence 2222 234555554443 6789999999877776667777754
No 207
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=60.11 E-value=2.4e+02 Score=29.98 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCC--CCHHHHHHHHHHHH-cCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659 365 YREDTAVFVSQSG--ETADTLQALEYASE-NGALCVGITNTVGSAIARKTHCGVHINA 419 (636)
Q Consensus 365 ~~~dlvI~iS~SG--~t~e~i~al~~ak~-~g~~vi~IT~~~~s~La~~ad~~l~~~~ 419 (636)
..-|++|.+...- +.+-....++.+++ +|+++|.|-.. .++. .||..+.+..
T Consensus 147 ~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~-~t~~--~ad~~~~~~p 201 (386)
T cd02768 147 EEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPK-DTDL--IADLTYPVSP 201 (386)
T ss_pred hhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCC-cccc--ccceEEEcCC
Confidence 3567777775433 23334445556654 49999988776 5555 6888876643
No 208
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=59.01 E-value=2.1e+02 Score=31.39 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCC-CeEEEEeCCCCHHHHHHHHHHHHHhc
Q 006659 478 QEMKVLAKQLIAE-QSLLVFGRGYNYATALEGALKVKEVA 516 (636)
Q Consensus 478 ~~~~~~a~~l~~~-~~~~~lG~G~~~~~A~e~alKl~E~~ 516 (636)
+.+.++|+.+... +.+++.|.|..-.-+.++...|.-..
T Consensus 253 ~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~ 292 (472)
T cd02771 253 EKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKAL 292 (472)
T ss_pred HHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHh
Confidence 5677888887654 56788888864333444444554444
No 209
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.93 E-value=1.3e+02 Score=35.65 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=37.5
Q ss_pred CCcEEEEEcCC-CCC--HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 366 REDTAVFVSQS-GET--ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~iS~S-G~t--~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
.-+++|++... ..+ .-....+..+|++|+++|.|-.. .++.+..||..|.+..|.+
T Consensus 173 ~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr-~t~ta~~AD~wlpirPGTD 231 (760)
T cd02760 173 LANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPH-LSVTGACSAEWVPIRPKTD 231 (760)
T ss_pred cCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCC-CCcchhhcCeEeCcCCCcH
Confidence 44566665332 222 12345567788999999999766 7888999999887765443
No 210
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=58.68 E-value=50 Score=39.26 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCcEEEEEcCC-CCC-----HHHHHHHHHHHHcCCeEEEEEcCCCCccc-cccCeeEEcCCCCc
Q 006659 366 REDTAVFVSQS-GET-----ADTLQALEYASENGALCVGITNTVGSAIA-RKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~iS~S-G~t-----~e~i~al~~ak~~g~~vi~IT~~~~s~La-~~ad~~l~~~~~~e 422 (636)
.-+++|.+... ..+ ......++.++++|+++|.|-.. .++.+ ..||..|.+..|.+
T Consensus 214 ~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr-~t~taa~~Ad~~l~irPGtD 276 (797)
T TIGR02166 214 NSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPR-YTDTVAGREDEWIPIRPGTD 276 (797)
T ss_pred hCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCC-CCccchhcCCEEECCCCCCH
Confidence 34566666433 222 13344555566789999999776 45554 68999887765443
No 211
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=55.52 E-value=54 Score=36.67 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=54.9
Q ss_pred HHHHHHHHHhc----------CCCeEEEEeCCCCH-H-HHHHHHHHHH--HhccccccccccccccccccccccCCCCeE
Q 006659 478 QEMKVLAKQLI----------AEQSLLVFGRGYNY-A-TALEGALKVK--EVALMHSEGILAGEMKHGPLALVDENLPIL 543 (636)
Q Consensus 478 ~~~~~~a~~l~----------~~~~~~~lG~G~~~-~-~A~e~alKl~--E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi 543 (636)
++++++++++. ..+.+++||-|-++ | -+..-+|+-. ....++....--++-.+--+..+++.+.+|
T Consensus 129 ~~~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLf 208 (533)
T PRK14095 129 ERLAEFLKKVRSGEIKNSNGKKFTTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTLF 208 (533)
T ss_pred HHHHHHHHHHHcCCccCCCCCccceEEEEecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEEE
Confidence 44555665553 36799999977654 2 2222233311 111221111111222222233356667777
Q ss_pred EEEeC-CcchHHHHH---HHHHHHhcC----CeEEEEecCCCCcCCCCCCcceEEEcCC
Q 006659 544 VIATR-DACFSKQQS---VIQQLHARK----GRLIVMCSKGDAASIFPGGSCRVIEVPQ 594 (636)
Q Consensus 544 ~l~~~-~~~~~~~~~---~~~~~~~~g----~~v~vi~~~~~~~~~~~~~~~~~~~~p~ 594 (636)
++.+. +.+.|-+.. +.+.+++.| .++++||+++...... .+...+|.+|.
T Consensus 209 iviSKSGtT~ETl~n~~~~r~wl~~~G~~~~~h~VaVT~~~s~l~~~-~~~~~~f~~~d 266 (533)
T PRK14095 209 IVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIAVTSEGSPMDDE-SGYLEVFHMWD 266 (533)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHcCccccceEEEEECCchHHHhh-cCccccCCCCC
Confidence 77764 445554332 234455445 5888998866432111 11234566663
No 212
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=55.41 E-value=78 Score=37.76 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=54.0
Q ss_pred HHHc-CCeEEEEEcCCCCccccc-cCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhh-
Q 006659 389 ASEN-GALCVGITNTVGSAIARK-THCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCD- 465 (636)
Q Consensus 389 ak~~-g~~vi~IT~~~~s~La~~-ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~- 465 (636)
++++ |+++|.|-.. -++.++. +|..|.+..|.+ ... ++.++-..+... .-+.+.+++....++.
T Consensus 246 ~~~~ggaklIvIDPr-~t~tA~~~ad~~l~irPGTD-------~AL----~lam~~vii~e~-l~D~~Fi~~~t~Gfe~~ 312 (822)
T TIGR02164 246 KVAAGEINVISIDPV-VTKTQAYLGCEHLYVNPQTD-------VAL----MLALAHTLYSEN-LYDKKFIEGYCLGFEEF 312 (822)
T ss_pred HhhCCCceEEEECCC-CCchhhhccCeEeccCCCcH-------HHH----HHHHHHHHHHCC-CccHHHHHHhcccHHHH
Confidence 3334 4899999876 6777775 788776654333 221 222222222222 2233333333222222
Q ss_pred -------------hHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCC
Q 006659 466 -------------LPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYN 501 (636)
Q Consensus 466 -------------l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~ 501 (636)
-|+.+.+.--. .+.++++|+.+...+..+++|.|..
T Consensus 313 ~~~l~~~~~g~~~tpe~aa~itGV~ae~I~~lA~~~a~~~~~~~~g~g~~ 362 (822)
T TIGR02164 313 LPYVLGSKDGVAKTPEWAAKICGVEAEVIRDLARMLVKGRTQLIFGWCIQ 362 (822)
T ss_pred HHHhccccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCEEEEeccch
Confidence 24444444333 6778999999977776666777644
No 213
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=55.15 E-value=43 Score=38.35 Aligned_cols=116 Identities=18% Similarity=0.146 Sum_probs=64.0
Q ss_pred ccchHHHHHHHcCCCeEEEEeechh-HHHHHHHHHHHHHhcCCcEEEeec------cch----hccc--CCCCCCcEEEE
Q 006659 306 LGGLKDHLKTIRRSRRIVFIGCGTS-YNAALAARPILEELSDLPVTMEIA------SDL----VDRQ--APIYREDTAVF 372 (636)
Q Consensus 306 ~~~l~~~~~~l~~~~~I~i~G~G~S-~~aa~~~~~~~~~~~~~~~~~~~~------~e~----~~~~--~~~~~~dlvI~ 372 (636)
.+.++.+++.|+++++|.+++.+.. ......++.++..++...+..... ... .... ..+..-|++|+
T Consensus 289 deAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ad~il~ 368 (603)
T TIGR01973 289 AEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEEADLVLL 368 (603)
T ss_pred HHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHhCCEEEE
Confidence 4566777888888788888876543 323344555555543211111000 000 0000 01234677777
Q ss_pred EcCCC-CC-HHHHHHHHHHHHcC-CeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 373 VSQSG-ET-ADTLQALEYASENG-ALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 373 iS~SG-~t-~e~i~al~~ak~~g-~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
+...- ++ +-....++.++++| +++|.|-.. .+..+..||..+.+..+.+
T Consensus 369 ~G~N~~~s~p~~~~~i~~a~~~ggaklividpr-~s~ta~~Ad~~l~i~Pgtd 420 (603)
T TIGR01973 369 VGADLRQEAPLLNLRLRKAVKKGGAKVALIGIE-KWNLTYPANTNLVFHPGLS 420 (603)
T ss_pred EccCchhhhHHHHHHHHHHHhcCCcEEEEECCc-cccchhhhccceeecCCcc
Confidence 75433 32 23334455666665 888887654 7889999999887755443
No 214
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=54.97 E-value=29 Score=33.67 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVH 416 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~ 416 (636)
.+-|++|++-.|+...-.-.+++.++++|+++|.|- ...+++...+|++|.
T Consensus 154 ~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN-~~~~~~d~~~d~~~~ 204 (206)
T cd01410 154 CRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVN-LQPTPKDKLADLVIH 204 (206)
T ss_pred hcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEEC-CCCCCCCccccEEEe
Confidence 457899999999998888889999999999888664 447888888887663
No 215
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=54.65 E-value=78 Score=37.74 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=33.5
Q ss_pred CCcEEEEEcCC-CCCH----HHHHHHHHHH-HcCCeEEEEEcCCCCccc-cccCeeEEcCCCC
Q 006659 366 REDTAVFVSQS-GETA----DTLQALEYAS-ENGALCVGITNTVGSAIA-RKTHCGVHINAGA 421 (636)
Q Consensus 366 ~~dlvI~iS~S-G~t~----e~i~al~~ak-~~g~~vi~IT~~~~s~La-~~ad~~l~~~~~~ 421 (636)
.-|++|++... -.|. .....+..++ ++|+++|.|-.. -|+.+ ..||..|.+..|.
T Consensus 231 ~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr-~t~taa~~AD~~l~irPGT 292 (814)
T PRK14990 231 NSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPR-YTDTGAGREDEWIPIRPGT 292 (814)
T ss_pred hCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCC-CCCcccccCCeEECCCCCc
Confidence 45666666433 2221 1223444555 579999999665 66665 5899988775543
No 216
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=54.63 E-value=1.8e+02 Score=29.33 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=64.9
Q ss_pred hhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccc-ccccccccccccccc-----c---
Q 006659 465 DLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALM-HSEGILAGEMKHGPL-----A--- 534 (636)
Q Consensus 465 ~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~-~a~~~~~~Ef~HGp~-----~--- 534 (636)
+.|..++.++.. ...++..++.|+.-.+++++|.|.+ |-|-+...+-+ |+++. .+|.--|-+ .
T Consensus 34 ~v~~AV~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTS------GRLGvlDAsEcPPTfgv-~~e~ViglIAGG~~A~~~ 106 (298)
T COG2103 34 KVPLAVEAALPQIAAAVDIIAAALKQGGRLIYIGAGTS------GRLGVLDASECPPTFGV-PPELVIGLIAGGEEAILK 106 (298)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcc------cchhccchhhCCCCcCC-ChhHeeeeecCCHHHHHH
Confidence 355556666654 5556777888888899999999964 11222222221 12222 111111111 1
Q ss_pred -------------------cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcC
Q 006659 535 -------------------LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAAS 580 (636)
Q Consensus 535 -------------------~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~ 580 (636)
-+.++..|+-+.-+|.+ .-....+++.+++|+.++-|+++.++.+
T Consensus 107 avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrT-PYvigal~yAr~~Ga~Ti~iacNp~s~i 170 (298)
T COG2103 107 AVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRT-PYVIGALEYARQRGATTIGIACNPGSAI 170 (298)
T ss_pred hhcCccccHHHHHHHHHHcCCCcCCEEEEEecCCCC-chhhHHHHHHHhcCCeEEEeecCCCchh
Confidence 12356778888876653 4456677888999999999999887654
No 217
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=54.02 E-value=74 Score=30.99 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcC
Q 006659 367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHIN 418 (636)
Q Consensus 367 ~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~ 418 (636)
.|++|++...-+ ..++++|+..|+++|+|++. ++.. +..|+.|+..
T Consensus 144 P~~vii~~~~~~----~~~i~Ea~~l~IP~i~i~Dt-n~~~-~~i~ypIp~N 189 (211)
T PF00318_consen 144 PDLVIILDPNKN----KNAIREANKLNIPTIAIVDT-NCNP-SLIDYPIPAN 189 (211)
T ss_dssp BSEEEESSTTTT----HHHHHHHHHTTS-EEEEEST-TS-G-TTSSEEEES-
T ss_pred CcEEEEeccccc----chhHHHHHhcCceEEEeecC-CCCc-cccceEeecC
Confidence 567777765443 57889999999999999987 4443 3378777653
No 218
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=52.89 E-value=2.2e+02 Score=27.47 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=45.4
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeecc---chh---------cccCCCCC---CcEEEEEcCCCCCHHH
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIAS---DLV---------DRQAPIYR---EDTAVFVSQSGETADT 382 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~---e~~---------~~~~~~~~---~dlvI~iS~SG~t~e~ 382 (636)
..++|+++|.|.+.. .-++.++ +. +-.+.+..+. ++. +......+ .+..+++..+|...-.
T Consensus 8 ~gk~vlVvGgG~va~--rk~~~Ll-~~-ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 8 EGRAVLVVGGGDVAL--RKARLLL-KA-GAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELN 83 (205)
T ss_pred CCCeEEEECcCHHHH--HHHHHHH-HC-CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHH
Confidence 357999999999842 2233333 33 4344443332 110 00011111 2345666668887777
Q ss_pred HHHHHHHHHcCCeEEEEEc
Q 006659 383 LQALEYASENGALCVGITN 401 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~ 401 (636)
..+.+.|+++|+.+-...+
T Consensus 84 ~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 84 RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred HHHHHHHHHcCCEEEECCC
Confidence 8899999999987755544
No 219
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=52.72 E-value=27 Score=35.28 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=44.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659 364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINA 419 (636)
Q Consensus 364 ~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~ 419 (636)
+.+-|++|+|-.|....-.-.+++.++++|+++|.|-. ..+++...+|+.|.-.+
T Consensus 202 ~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~-~~t~~d~~a~~~i~~~~ 256 (260)
T cd01409 202 LAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNI-GPTRADHLATLKVDARC 256 (260)
T ss_pred HhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcC-CCCCCCccccEEEeCCh
Confidence 34578999999999888888889999999998887765 47889999998775543
No 220
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=51.68 E-value=29 Score=34.06 Aligned_cols=50 Identities=16% Similarity=-0.000 Sum_probs=40.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeE
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGV 415 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l 415 (636)
.+-|++|++-.|+...-.-.+++.|+++|+++|.|- ...++....+|+.|
T Consensus 170 ~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN-~~~~~~~~~~~~~i 219 (222)
T cd01413 170 KEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVN-ADETPFDYIADLVI 219 (222)
T ss_pred hcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEc-CCCCCCCcceeEEE
Confidence 456899999999988888889999999999988664 44678888888765
No 221
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=51.41 E-value=75 Score=38.19 Aligned_cols=99 Identities=11% Similarity=0.066 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcC--CCeEEEEeCCCCHHHHHHHHHHHHHhcccc---ccccccccccccccccccCCCCeEEEEe-CCcc
Q 006659 478 QEMKVLAKQLIA--EQSLLVFGRGYNYATALEGALKVKEVALMH---SEGILAGEMKHGPLALVDENLPILVIAT-RDAC 551 (636)
Q Consensus 478 ~~~~~~a~~l~~--~~~~~~lG~G~~~~~A~e~alKl~E~~~~~---a~~~~~~Ef~HGp~~~~~~~~~vi~l~~-~~~~ 551 (636)
+++++++++++. .++++++|.|-++--+.-..-.+......+ ......+.+...-+..++....+|++.+ +|.+
T Consensus 441 ~~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT 520 (948)
T PRK09533 441 AEYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGT 520 (948)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCC
Confidence 556678887754 689999997765444432221122111111 1111112222222223444555555554 4555
Q ss_pred hHHHHHHHHH----HH-----hcCCeEEEEecCCC
Q 006659 552 FSKQQSVIQQ----LH-----ARKGRLIVMCSKGD 577 (636)
Q Consensus 552 ~~~~~~~~~~----~~-----~~g~~v~vi~~~~~ 577 (636)
.|-+. ..+. ++ ..+.++++||..+.
T Consensus 521 ~ET~s-a~~~~~~~l~~~~g~~~~~~~VaVTdpgs 554 (948)
T PRK09533 521 LEPNI-FKDYFFARVKEVLGAKAGRHFVAVTDPGS 554 (948)
T ss_pred HHHHH-HHHHHHHHhhhhcccccCCeEEEEeCCCC
Confidence 55432 2222 21 34667888887543
No 222
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=50.29 E-value=2.7e+02 Score=33.14 Aligned_cols=37 Identities=8% Similarity=0.275 Sum_probs=22.8
Q ss_pred HHHHHHHHhc-hHHHHHHHHHhcCC-------CeEEEEeCCCCHH
Q 006659 467 PNKVREVLKL-DQEMKVLAKQLIAE-------QSLLVFGRGYNYA 503 (636)
Q Consensus 467 ~~~~~~~~~~-~~~~~~~a~~l~~~-------~~~~~lG~G~~~~ 503 (636)
++.+.++--. .+.++++|+.+... +.+++.|.|..++
T Consensus 343 ~e~aa~itGV~~~~I~~~A~~~a~~k~~~~~~~~~~~~~~G~~~~ 387 (806)
T TIGR02693 343 MAQAERITGVSRAEIEKAAEWIAKPKAGGKKRRTMTIYEKGIIWG 387 (806)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcccccCccceEEEecchheec
Confidence 4555554433 67788899887653 3566667665543
No 223
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=50.23 E-value=16 Score=32.67 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEE--cCCCCccccccCeeEEc
Q 006659 367 EDTAVFVSQSGETADTLQALEYASENGALCVGIT--NTVGSAIARKTHCGVHI 417 (636)
Q Consensus 367 ~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT--~~~~s~La~~ad~~l~~ 417 (636)
.|.+|++|.- .+...+++.++++|.+|+.+. +.....|.+.||..+.+
T Consensus 96 ~d~ivLvSgD---~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 96 PDTIVLVSGD---SDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFISI 145 (146)
T ss_dssp -SEEEEE------GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE-
T ss_pred CCEEEEEECc---HHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEeC
Confidence 3888888855 468888899999999888887 45677788899987764
No 224
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=48.57 E-value=1.6e+02 Score=26.32 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC--CCCCCc---EEEEEcCCCCC--HHH
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA--PIYRED---TAVFVSQSGET--ADT 382 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~d---lvI~iS~SG~t--~e~ 382 (636)
++++..|.+ +.-+++|.+....+|.-++..+.+..+.++......|..+... ...+.+ .++.+.-.... ...
T Consensus 4 k~LA~~l~g-~~Pvi~g~~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (132)
T cd05637 4 KELALELAG-RIPIIYGSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRIKL 82 (132)
T ss_pred HHHHHHhcC-CCCEEEeccchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccCcccccceEEEecCcccccchhH
Confidence 345555655 5667777776667788889999998898888776666644321 111212 33323222222 111
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCccccccCe
Q 006659 383 LQALEYASENGALCVGITNTVGSAIARKTHC 413 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad~ 413 (636)
...+..++++|..+..++...+|+|++++..
T Consensus 83 r~~~~~~~~~~~~~~~~~~~g~s~l~rl~~L 113 (132)
T cd05637 83 RIVITKFEEGGIPYEVIESVGASPLARLLSL 113 (132)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHH
Confidence 1223337788999999998888887776553
No 225
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=48.50 E-value=1.8e+02 Score=32.62 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=49.6
Q ss_pred CCCeEEEEeCCC-CHHHHH-HHHHHHHHh--cccccccccccccccccccccc--CCCCeEEEEe-CCcchHHHH---HH
Q 006659 489 AEQSLLVFGRGY-NYATAL-EGALKVKEV--ALMHSEGILAGEMKHGPLALVD--ENLPILVIAT-RDACFSKQQ---SV 558 (636)
Q Consensus 489 ~~~~~~~lG~G~-~~~~A~-e~alKl~E~--~~~~a~~~~~~Ef~HGp~~~~~--~~~~vi~l~~-~~~~~~~~~---~~ 558 (636)
..+.+++||-|- ..|.-. .-||+ .+. ..++.....-+...+--+..++ +.+.+|++.+ .+.+.|-+. .+
T Consensus 113 ~~~~vV~IGIGGS~LGp~~v~~AL~-~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSGtT~ET~~n~~~~ 191 (528)
T PRK14096 113 KFTDVLWIGIGGSALGPQFVAEALQ-PNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSGGTPETRNGMLEA 191 (528)
T ss_pred CCCeEEEECCCcchHHHHHHHHHHh-hcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHH
Confidence 367999999554 333322 22222 000 0122222223344444444454 4444555554 455555432 22
Q ss_pred HHHHHhcC----CeEEEEecCCCCcCCC--CCCcceEEEcCC-CCc
Q 006659 559 IQQLHARK----GRLIVMCSKGDAASIF--PGGSCRVIEVPQ-VED 597 (636)
Q Consensus 559 ~~~~~~~g----~~v~vi~~~~~~~~~~--~~~~~~~~~~p~-~~~ 597 (636)
.+.+++.| .++++||+++...... ..+...+|.+|. +..
T Consensus 192 ~~~l~~~G~~~~~h~VAVT~~~s~L~~~A~~~g~~~~F~~~d~VGG 237 (528)
T PRK14096 192 KAAYEAAGLDFASHAVAITMKGSKLDQLAQSEGWLARFPMWDWVGG 237 (528)
T ss_pred HHHHHhhcccccceEEEEECCCcHHhhhccccCceeEeeCCCCCCC
Confidence 23344444 5899999866432111 011235788874 433
No 226
>PRK08114 cystathionine beta-lyase; Provisional
Probab=48.08 E-value=3.8e+02 Score=28.83 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=75.7
Q ss_pred HcCCCeEEEEeec--hhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCC----CHHHHHHHHHH
Q 006659 316 IRRSRRIVFIGCG--TSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGE----TADTLQALEYA 389 (636)
Q Consensus 316 l~~~~~I~i~G~G--~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~----t~e~i~al~~a 389 (636)
++..++|++.... .++ ..+...+.+ .|+.+...+..+.......+++++-+|.+....+ -.++-+..+.|
T Consensus 98 l~~GD~Vv~~~~~Yg~t~---~l~~~~l~~-~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia 173 (395)
T PRK08114 98 VEQGDHVLMTGTAYEPTQ---DFCSKILSK-LGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAV 173 (395)
T ss_pred cCCCCEEEEeCCCcHHHH---HHHHHHHHh-cCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHH
Confidence 3555666654332 222 122334444 3666666655443222233556665656544433 37777889999
Q ss_pred HHcC--CeEEEEEcCCCCc-----cccccCeeEEcCC----CCcccccchhhHHHHH-HHHHHHHHHHhcCCCCcHHHHH
Q 006659 390 SENG--ALCVGITNTVGSA-----IARKTHCGVHINA----GAEIGVASTKAYTSQI-VVMAMLALAIGGDTISTQARRE 457 (636)
Q Consensus 390 k~~g--~~vi~IT~~~~s~-----La~~ad~~l~~~~----~~e~~~~~t~s~~~~~-~~l~lL~~~~~~~~~~~~~~~~ 457 (636)
|+.| +.++ |=+.-.+| +.--||+++.-.. |............... -.+......++. ..+..+.-
T Consensus 174 ~~~g~g~~lv-VDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~--~~~p~~a~ 250 (395)
T PRK08114 174 RSVNPDAVIM-IDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQ--MVDADTAY 250 (395)
T ss_pred HHhCCCCEEE-EECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccC--CCCHHHHH
Confidence 9975 5443 22222233 3333777664322 1111010100000001 001101111111 11333344
Q ss_pred HHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCe
Q 006659 458 AIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492 (636)
Q Consensus 458 ~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~ 492 (636)
-+.+.|+.++-.+++.- +-+.++|+.|..++.
T Consensus 251 l~~rgl~TL~lR~~~~~---~na~~va~~L~~hp~ 282 (395)
T PRK08114 251 MTSRGLRTLGVRLRQHE---ESSLKVAEWLAEHPE 282 (395)
T ss_pred HHHcCCCcHHHHHHHHH---HHHHHHHHHHHcCCC
Confidence 45566777776666544 446677777766653
No 227
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=47.36 E-value=93 Score=32.49 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHI 417 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~ 417 (636)
.-|++|++....+ ..++++|++.|++||+|.++. ++.. ..|+.|+.
T Consensus 152 ~Pd~viv~d~~~e----~~AI~EA~kl~IPvIaivDTn-~dp~-~IdypIP~ 197 (326)
T PRK12311 152 LPDLLFVIDTNKE----DIAIQEAQRLGIPVAAIVDTN-CDPD-GITYPVPG 197 (326)
T ss_pred CCCEEEEeCCccc----hHHHHHHHHcCCCEEEEeeCC-CCcc-ccceeecC
Confidence 4667888765543 578889999999999999874 4433 46766644
No 228
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=46.12 E-value=38 Score=42.18 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=26.9
Q ss_pred ceEEEEEe-cccccchhhHHHHHHHHHHhccccC--------CCCcCeeEe
Q 006659 2 CGIFAYLN-YGVNRERRYILQVLFNGLRRLEYRG--------YDSAGICID 43 (636)
Q Consensus 2 cGI~g~~~-~~~~~~~~~~~~~l~~~l~~l~~RG--------~d~~Gi~~~ 43 (636)
||+ |++. .++. ..-+....-+.+|..|.||| -|++||-+.
T Consensus 15 CGv-GfiA~i~G~-~Sh~iV~~al~aL~~m~HRGa~gaD~~tGDGAGIl~q 63 (1485)
T PRK11750 15 CGF-GLIAHMEGE-PSHKLVRTAIHALARMTHRGGIAADGKTGDGCGLLLQ 63 (1485)
T ss_pred Ccc-eEEEEcCCC-ccHHHHHHHHHHHHhccCcCcccCCCCCCCcceeecc
Confidence 887 4543 3333 23356677888999999999 367777664
No 229
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.07 E-value=79 Score=26.36 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=48.4
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCCcEEEe--eccch-h--cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCe
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDLPVTME--IASDL-V--DRQAPIYREDTAVFVSQSGETADTLQALEYASENGAL 395 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~--~~~e~-~--~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~ 395 (636)
+|.++|.-... -...+..+.+. |...... ....- . ..+..+.+-|+||++..-=.=..+..+-+.|++.|.+
T Consensus 1 ~vliVGG~~~~--~~~~~~~~~~~-G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDR--ERRYKRILEKY-GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred CEEEEcCCccc--HHHHHHHHHHc-CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCc
Confidence 36677762222 13455666665 4443443 11111 1 1233466789999887776666677778889999999
Q ss_pred EEEEEcCCCC
Q 006659 396 CVGITNTVGS 405 (636)
Q Consensus 396 vi~IT~~~~s 405 (636)
++-.-+..-+
T Consensus 78 ~~~~~~~~~~ 87 (97)
T PF10087_consen 78 IIYSRSRGVS 87 (97)
T ss_pred EEEECCCCHH
Confidence 8877544333
No 230
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=45.52 E-value=1.3e+02 Score=35.99 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=47.5
Q ss_pred ccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEe--eccc----------hhc---ccCC---CCCC
Q 006659 306 LGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTME--IASD----------LVD---RQAP---IYRE 367 (636)
Q Consensus 306 ~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~--~~~e----------~~~---~~~~---~~~~ 367 (636)
.+.++.+++.|++++..+.+|++.+.+ .-.+.+.++.+..-... .... +.. .... +..-
T Consensus 296 deAl~~ia~~l~~~~~~~G~~s~~~t~---e~~~~l~k~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~a 372 (847)
T PRK08166 296 DQALQGAADILRQAKKVIGIGSPRASL---ESNFALRELVGAENFYTGIAAGEQERLQLALKVLREGGIYTPSLREIESY 372 (847)
T ss_pred HHHHHHHHHHHHhhcceEEEECCCcch---HHHHHHHHHhCCCCcccccChHHhhhhhHHHHHhhcCCCCCCCHHHHHhC
Confidence 356677788888877777666654422 22334444444321110 0000 000 0011 2345
Q ss_pred cEEEEEcCC-CC-CHHHHHHHHHHHHcCCeEEEEEc
Q 006659 368 DTAVFVSQS-GE-TADTLQALEYASENGALCVGITN 401 (636)
Q Consensus 368 dlvI~iS~S-G~-t~e~i~al~~ak~~g~~vi~IT~ 401 (636)
|++|++... .+ .+-+...++.|+++|+++|+|-.
T Consensus 373 d~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividp 408 (847)
T PRK08166 373 DAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQ 408 (847)
T ss_pred CEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeecc
Confidence 666666433 32 33444566788889998887654
No 231
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=45.45 E-value=1.9e+02 Score=31.65 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCCCCcEEEEEcCCCCCH----HHHHHHHHHHHcCCeEEEEEcCC------CCccccccCeeEEc
Q 006659 363 PIYREDTAVFVSQSGETA----DTLQALEYASENGALCVGITNTV------GSAIARKTHCGVHI 417 (636)
Q Consensus 363 ~~~~~dlvI~iS~SG~t~----e~i~al~~ak~~g~~vi~IT~~~------~s~La~~ad~~l~~ 417 (636)
.+++++-+|.+-..|+.. ++-+..+.|+++|+.+|. ++. ..|+..-||+++.-
T Consensus 143 ~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~liv--D~T~~tP~~~~pl~~GADIvv~S 205 (432)
T PRK06702 143 LANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIV--DNTLATPYLCQAFEHGANIIVHS 205 (432)
T ss_pred hCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEE--ECCCCchhhCChhhcCCCEEEEc
Confidence 345665555565567777 888999999999976653 332 34555668876654
No 232
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.26 E-value=71 Score=26.71 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=42.5
Q ss_pred eEEEEeechh-HHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEE
Q 006659 321 RIVFIGCGTS-YNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGI 399 (636)
Q Consensus 321 ~I~i~G~G~S-~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~I 399 (636)
-++++|.|.| ..++.-++..+.. .++++.+...+.-.. ......-|+++.-.+-.. ..-+.-+.+.+.|+++..|
T Consensus 6 ILl~C~~G~sSS~l~~k~~~~~~~-~gi~~~v~a~~~~~~-~~~~~~~Dvill~pqi~~--~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 6 ILLLCAAGMSTSLLVNKMNKAAEE-YGVPVKIAAGSYGAA-GEKLDDADVVLLAPQVAY--MLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred EEEECCCchhHHHHHHHHHHHHHH-CCCcEEEEEecHHHH-HhhcCCCCEEEECchHHH--HHHHHHHHhhhcCCCEEEe
Confidence 3577777743 3344555555555 466665543332111 112334576666443332 2223334456678999999
Q ss_pred EcCCCCc
Q 006659 400 TNTVGSA 406 (636)
Q Consensus 400 T~~~~s~ 406 (636)
....-..
T Consensus 82 ~~~~Y~~ 88 (95)
T TIGR00853 82 NGAQYGK 88 (95)
T ss_pred Chhhccc
Confidence 8754333
No 233
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=43.96 E-value=28 Score=31.48 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcC--CCCccccccCe
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNT--VGSAIARKTHC 413 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~--~~s~La~~ad~ 413 (636)
.-|.+|++|.-+ +...+++.++++|.+|+++... ....|.+.||.
T Consensus 99 ~~d~ivLvSgD~---Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~ 145 (149)
T cd06167 99 RIDTIVLVSGDS---DFVPLVERLRELGKRVIVVGFEAKTSRELRKAADR 145 (149)
T ss_pred CCCEEEEEECCc---cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCCc
Confidence 467888888655 7889999999999999999884 34446666663
No 234
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=43.07 E-value=33 Score=29.59 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=35.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCc--cccccCeeEEcCC
Q 006659 371 VFVSQSGETADTLQALEYASENGALCVGITNTVGSA--IARKTHCGVHINA 419 (636)
Q Consensus 371 I~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~--La~~ad~~l~~~~ 419 (636)
|+|-.+|+. .+++++.+|+.|..+|+|-+++++. -.+.||..+..+.
T Consensus 5 vLIanrGei--a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~ 53 (110)
T PF00289_consen 5 VLIANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPP 53 (110)
T ss_dssp EEESS-HHH--HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEES
T ss_pred EEEECCCHH--HHHHHHHHHHhCCcceeccCchhcccccccccccceecCc
Confidence 344555544 7899999999999999999988754 4567898877763
No 235
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=42.87 E-value=44 Score=33.93 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=42.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccc-cccCeeEEc
Q 006659 364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIA-RKTHCGVHI 417 (636)
Q Consensus 364 ~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La-~~ad~~l~~ 417 (636)
+.+-|++|++-.|+...-.-.+.+.|+++|+++|.|... .+++. ..+|+.|.-
T Consensus 197 ~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~-~t~~~~~~~d~~i~~ 250 (271)
T PTZ00409 197 IDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNIS-KTYITNRISDYHVRA 250 (271)
T ss_pred HHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCC-CCCCCCccccEEEEC
Confidence 346789999999999888888999999999999977655 56666 567877644
No 236
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=42.59 E-value=3.2e+02 Score=30.03 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEc
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITN 401 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~ 401 (636)
+.++.++-|+. ..+.-+.-...++.|+.+++...
T Consensus 193 ~~~vnl~G~~~--~~~~~~i~~lL~~lGI~v~~~lp 226 (457)
T CHL00073 193 HPPLVLFGSLP--STVASQLTLELKRQGIKVSGWLP 226 (457)
T ss_pred CCcEEEEEecC--cccHHHHHHHHHHcCCeEeEEeC
Confidence 45677777877 45567777888999999986555
No 237
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.33 E-value=1.2e+02 Score=33.04 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=32.0
Q ss_pred CCcEEEeeccchhcccCCCCCCcEEEEEcCCCCC----HHHHHHHHHHHHcCCeEEE
Q 006659 346 DLPVTMEIASDLVDRQAPIYREDTAVFVSQSGET----ADTLQALEYASENGALCVG 398 (636)
Q Consensus 346 ~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t----~e~i~al~~ak~~g~~vi~ 398 (636)
|+.+...+..+.......+++++-+|.+..-++. .++-++.+.|+++|+.+|.
T Consensus 128 Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~liv 184 (433)
T PRK08134 128 GIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLV 184 (433)
T ss_pred CeEEEEECCCCHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEE
Confidence 4444444433321112235566666666655654 6888899999999977664
No 238
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=42.24 E-value=1.7e+02 Score=27.38 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHH---HHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHH
Q 006659 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGAL---KVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSK 554 (636)
Q Consensus 478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~al---Kl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~ 554 (636)
+.++=+|+.+-....+|+-|.|..-++..++-. +|.-+.+.+ + -++-+..+++-..|++|.+ ..+.+.
T Consensus 26 daARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~-------~-~~~~~~~lt~~DRVllfs~-~~~~~e 96 (172)
T PF10740_consen 26 DAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLS-------E-DLENFDELTETDRVLLFSP-FSTDEE 96 (172)
T ss_dssp HHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE---------T-T--------TT-EEEEEES--S--HH
T ss_pred HHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCc-------c-cccccccccccceEEEEeC-CCCCHH
Confidence 344556777788899999999976555554422 221111110 0 0122344666667888875 455667
Q ss_pred HHHHHHHHHhcCCeEEEEe
Q 006659 555 QQSVIQQLHARKGRLIVMC 573 (636)
Q Consensus 555 ~~~~~~~~~~~g~~v~vi~ 573 (636)
..++++.+.+.|..+++|+
T Consensus 97 ~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 97 AVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHCCCCEEEEE
Confidence 7788999999999999999
No 239
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=42.15 E-value=42 Score=33.50 Aligned_cols=54 Identities=6% Similarity=-0.021 Sum_probs=43.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINA 419 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~ 419 (636)
.+-|++|++-.|....-.-..+..++++|++++.|.. ..+++...+|+.+...+
T Consensus 177 ~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~-~~t~~d~~~~~~i~~~~ 230 (244)
T PRK14138 177 SKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNL-GETPLDDIATLKYNMDV 230 (244)
T ss_pred hcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcC-CCCCCCcceeEEEeCCH
Confidence 4578999999999888888888899999999886654 57888888888775533
No 240
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=41.62 E-value=73 Score=29.39 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCC-CCHHHHHHHHHHHHcCCeEEE
Q 006659 364 IYREDTAVFVSQSG-ETADTLQALEYASENGALCVG 398 (636)
Q Consensus 364 ~~~~dlvI~iS~SG-~t~e~i~al~~ak~~g~~vi~ 398 (636)
+-.+|++++.-..| .++-|.+.++.|+++|+++|+
T Consensus 104 ll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis 139 (217)
T COG4015 104 LLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTIS 139 (217)
T ss_pred hhcCCEEEEEecCCCcchhHHHHHHHHHHcCceEee
Confidence 34566655555555 567778889999999999886
No 241
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.21 E-value=1.2e+02 Score=32.99 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=21.2
Q ss_pred cCCCeEEEEeechhHHHHHHHHHHHHHhcC-CcEEEee
Q 006659 317 RRSRRIVFIGCGTSYNAALAARPILEELSD-LPVTMEI 353 (636)
Q Consensus 317 ~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~-~~~~~~~ 353 (636)
+..++|+|+|.|.|..++ ..++.+..+ ..+...+
T Consensus 5 ~~~~~v~viG~G~sG~s~---~~~l~~~~~~~~v~~~D 39 (438)
T PRK04663 5 QGIKNVVVVGLGITGLSV---VKHLRKYQPQLTVKVID 39 (438)
T ss_pred cCCceEEEEeccHHHHHH---HHHHHhcCCCCeEEEEe
Confidence 345789999999996544 344444443 5555544
No 242
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=39.95 E-value=1.1e+02 Score=29.87 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=43.9
Q ss_pred CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch--hcccCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q 006659 320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL--VDRQAPIYREDTAVFVSQSGETADTLQALEY 388 (636)
Q Consensus 320 ~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ 388 (636)
--+++++++...-. ..+....+. .++.+.+.+..++ ...+..++.+.+.|+||.+|.++-+-..++.
T Consensus 73 ~~lviaAt~d~~ln-~~i~~~a~~-~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~ 141 (210)
T COG1648 73 AFLVIAATDDEELN-ERIAKAARE-RRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLRE 141 (210)
T ss_pred ceEEEEeCCCHHHH-HHHHHHHHH-hCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHH
Confidence 45667777765433 333333444 3677777665554 2334557789999999999999987776664
No 243
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=39.50 E-value=4.9e+02 Score=27.57 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=34.0
Q ss_pred CCCCcEEEEE---cC-CCCCHHHHHHHHHHHHcCCeEEE----EEcCCCCccccccCeeEEc
Q 006659 364 IYREDTAVFV---SQ-SGETADTLQALEYASENGALCVG----ITNTVGSAIARKTHCGVHI 417 (636)
Q Consensus 364 ~~~~dlvI~i---S~-SG~t~e~i~al~~ak~~g~~vi~----IT~~~~s~La~~ad~~l~~ 417 (636)
+++++-+|.+ +. .|...++-++++.|+++|+.+|. .+.....|+..-+|+++.-
T Consensus 133 i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S 194 (364)
T PRK07269 133 IEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHS 194 (364)
T ss_pred cCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEec
Confidence 3445445542 22 36667888899999999987763 2333356666678876654
No 244
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=38.90 E-value=1.1e+02 Score=25.93 Aligned_cols=74 Identities=22% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEEEeec-hhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEE
Q 006659 322 IVFIGCG-TSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGI 399 (636)
Q Consensus 322 I~i~G~G-~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~I 399 (636)
++++|.| ||..++.-.+..+.. .++++.+. ...........+.-|+++...|-..-.+-++ +.+..+|.++..|
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~-~gi~~~i~-a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~--~~~~~~~ipv~~I 78 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKE-RGVPLEAA-AGAYGSHYDMIPDYDLVILAPQMASYYDELK--KDTDRLGIKLVTT 78 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCcEEEE-EeeHHHHHHhccCCCEEEEcChHHHHHHHHH--HHhhhcCCCEEEe
No 245
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=38.44 E-value=4.1e+02 Score=28.49 Aligned_cols=170 Identities=15% Similarity=0.067 Sum_probs=0.0
Q ss_pred ccchHHHHHHHcCC------CeEEEEeech-hHHHHHHHHHHHHHhcCCcEEE-------------eeccchhcccCCCC
Q 006659 306 LGGLKDHLKTIRRS------RRIVFIGCGT-SYNAALAARPILEELSDLPVTM-------------EIASDLVDRQAPIY 365 (636)
Q Consensus 306 ~~~l~~~~~~l~~~------~~I~i~G~G~-S~~aa~~~~~~~~~~~~~~~~~-------------~~~~e~~~~~~~~~ 365 (636)
.+.++.+++.|+.+ +.|.+++.+. +......++.+++.++.-.+.. ............+.
T Consensus 72 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 151 (414)
T cd02772 72 ETALEYVAEGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLGMPIAEIS 151 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCCCCCCcHHHHH
Q ss_pred CCcEEEEEcCCC--CCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHH
Q 006659 366 REDTAVFVSQSG--ETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLAL 443 (636)
Q Consensus 366 ~~dlvI~iS~SG--~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~ 443 (636)
.-|++|++...- +.+-....++.++++|+++|.|... .+..+....+.....+. +.+..+.-+..
T Consensus 152 ~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~--------~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~ 218 (414)
T cd02772 152 ELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPA--------DDDFLFPLSGKAIVAPS-----ALANALAQVAK 218 (414)
T ss_pred hCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCc--------cchhhcccccccccCcH-----HHHHHHHHHHH
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCe-EEEEeCCCCH
Q 006659 444 AIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS-LLVFGRGYNY 502 (636)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~-~~~lG~G~~~ 502 (636)
.+........++..+ ..++ .+.+.++|+.+...+. +++.|.|..+
T Consensus 219 ~~~~~~~~~~~~~~~-----~gv~---------~~~i~~~a~~l~~a~~~~i~~G~g~~~ 264 (414)
T cd02772 219 ALAEEKGLAVPDEDA-----KVEA---------SEEARKIAASLVSAERAAVFLGNLAQN 264 (414)
T ss_pred HHHHhcCcCChHHHh-----cCCC---------HHHHHHHHHHHhcCCCeEEEEccchhc
No 246
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.24 E-value=1.7e+02 Score=32.16 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=24.3
Q ss_pred HHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 311 DHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 311 ~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
++...+. .++|.++|.|.|. ..+..++.+. |..+...+
T Consensus 7 ~~~~~~~-~~~i~v~G~G~sG---~a~a~~L~~~-G~~V~~~D 44 (458)
T PRK01710 7 EFKKFIK-NKKVAVVGIGVSN---IPLIKFLVKL-GAKVTAFD 44 (458)
T ss_pred HHhhhhc-CCeEEEEcccHHH---HHHHHHHHHC-CCEEEEEC
Confidence 3444444 5799999999996 4555556554 55555555
No 247
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.57 E-value=89 Score=30.24 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=40.9
Q ss_pred CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch--hcccCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q 006659 320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL--VDRQAPIYREDTAVFVSQSGETADTLQALEY 388 (636)
Q Consensus 320 ~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ 388 (636)
-.+++.+.|......... ....+ .++.+.+.+.-+. .+.+..+..+++.|+||.+|.++-+-..++.
T Consensus 70 ~~lVi~at~d~~ln~~i~-~~a~~-~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~ 138 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVA-HAARA-RGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRE 138 (205)
T ss_pred cEEEEECCCCHHHHHHHH-HHHHH-cCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHH
Confidence 356677778763222222 22222 3677765554443 2334456789999999999999976655553
No 248
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=35.97 E-value=2.3e+02 Score=30.66 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=13.4
Q ss_pred CCCeEEEEeCCCCHHHHH
Q 006659 489 AEQSLLVFGRGYNYATAL 506 (636)
Q Consensus 489 ~~~~~~~lG~G~~~~~A~ 506 (636)
..+.++++|.|-++--++
T Consensus 57 ~~~~VV~iGIGGS~LG~~ 74 (410)
T PRK03868 57 SIKNIVVIGIGGSSLGVK 74 (410)
T ss_pred CCCEEEEEecChHHHHHH
Confidence 678999999887654444
No 249
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=35.44 E-value=2.1e+02 Score=26.65 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=32.6
Q ss_pred HHHHhc-CCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccc
Q 006659 483 LAKQLI-AEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILA 525 (636)
Q Consensus 483 ~a~~l~-~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~ 525 (636)
+++.+. ..+.++++|.|....-+.+...++.|..++|...-..
T Consensus 20 aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 20 VAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred HHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 344443 3468899999998788888889999999888765553
No 250
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=35.37 E-value=83 Score=34.32 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=39.6
Q ss_pred cCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-----h----------cccCCCCCCc-EEEEEcCCCCCH
Q 006659 317 RRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-----V----------DRQAPIYRED-TAVFVSQSGETA 380 (636)
Q Consensus 317 ~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-----~----------~~~~~~~~~d-lvI~iS~SG~t~ 380 (636)
+..++|+|+|.|++.+.|. +..+... |..+.-.+..+. + +.+.++.+.+ +++.-..+-+++
T Consensus 5 ~~~~~iHfIGIgG~GMsgl--A~iL~~~-G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~Np 81 (459)
T COG0773 5 KTLPKIHFIGIGGIGMSGL--AEILLNL-GYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNP 81 (459)
T ss_pred CCCceEEEEeeccccHHHH--HHHHHhC-CCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCH
Confidence 3455899999999976443 2333332 333332221111 0 1122233333 445556677788
Q ss_pred HHHHHHHHHHHcCCeEE
Q 006659 381 DTLQALEYASENGALCV 397 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi 397 (636)
|++ .|+++|++++
T Consensus 82 Ei~----~A~e~~ipi~ 94 (459)
T COG0773 82 EIV----AALERGIPVI 94 (459)
T ss_pred HHH----HHHHcCCCeE
Confidence 877 5667777765
No 251
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.30 E-value=1e+02 Score=34.20 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=21.3
Q ss_pred CCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 319 SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
.++|+|+|.|.|.. .++.++.+. |..+...+
T Consensus 7 ~~~i~v~G~G~sG~---s~a~~L~~~-G~~v~~~D 37 (498)
T PRK02006 7 GPMVLVLGLGESGL---AMARWCARH-GARLRVAD 37 (498)
T ss_pred CCEEEEEeecHhHH---HHHHHHHHC-CCEEEEEc
Confidence 47899999999974 355556554 55555555
No 252
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.10 E-value=1.8e+02 Score=24.23 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred CeEEEEeec-hhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEE
Q 006659 320 RRIVFIGCG-TSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVG 398 (636)
Q Consensus 320 ~~I~i~G~G-~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~ 398 (636)
+-++++|.| +|..++..++..+.. .++++.+...+--... .....-|+++.-.|-.. ..-++-+.+...++++..
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~Diil~~Pqv~~--~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEK-RGIDAEIEAVPESELE-EYIDDADVVLLGPQVRY--MLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHH-CCCceEEEEecHHHHH-HhcCCCCEEEEChhHHH--HHHHHHHHhccCCCcEEE
Q ss_pred EEcCCCCcc
Q 006659 399 ITNTVGSAI 407 (636)
Q Consensus 399 IT~~~~s~L 407 (636)
|-...-.++
T Consensus 77 I~~~~Y~~~ 85 (96)
T cd05564 77 IDMMDYGMM 85 (96)
T ss_pred cChHhcccC
No 253
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.59 E-value=1.9e+02 Score=31.62 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEcCCCC----CHHHHHHHHHHHHcCCeEE
Q 006659 363 PIYREDTAVFVSQSGE----TADTLQALEYASENGALCV 397 (636)
Q Consensus 363 ~~~~~dlvI~iS~SG~----t~e~i~al~~ak~~g~~vi 397 (636)
.+++++-+|.+...++ ..++-++.+.|+++|+.+|
T Consensus 151 ~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~li 189 (437)
T PRK05613 151 AVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLI 189 (437)
T ss_pred hCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEE
Confidence 3456654444544443 3788889999999997765
No 254
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=33.37 E-value=2.9e+02 Score=26.63 Aligned_cols=67 Identities=30% Similarity=0.330 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCC--CHHHHHHHHHHHHcCCeEEEEE
Q 006659 333 AALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGE--TADTLQALEYASENGALCVGIT 400 (636)
Q Consensus 333 aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~--t~e~i~al~~ak~~g~~vi~IT 400 (636)
+...++.++.+-.++.+.+....+.. ....+..-|++|..+..|. +.+-.++++..-+.|...|+|=
T Consensus 20 ~~~~l~~ll~~~~~~~v~~~~~~~~~-~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 20 AKKALAQLLEESEGFEVTVTEDPDDL-TPENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSGGCT-SHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred HHHHHHHHhccCCCEEEEEEeCcccC-ChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 33555666664445665554432221 1234678899999999984 8999999999999999999986
No 255
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=33.33 E-value=1.5e+02 Score=32.36 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=31.7
Q ss_pred CCCCc-EEEEEcCC---CCCHHHHHHHHHHHHcCCeEEEEEcCC------CCccccccCeeEE
Q 006659 364 IYRED-TAVFVSQS---GETADTLQALEYASENGALCVGITNTV------GSAIARKTHCGVH 416 (636)
Q Consensus 364 ~~~~d-lvI~iS~S---G~t~e~i~al~~ak~~g~~vi~IT~~~------~s~La~~ad~~l~ 416 (636)
+++++ +|++-+-+ |...++-++.+.|+++|+.+|. ++. ..|+..-+|+++.
T Consensus 152 i~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liV--D~t~a~~~~~~pl~~GaDivv~ 212 (436)
T PRK07812 152 VRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIV--DNTIATPYLIRPLEHGADIVVH 212 (436)
T ss_pred CCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE--ECCCcccccCCchhcCCCEEEE
Confidence 44555 44444444 8889999999999999975543 332 2334444776553
No 256
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.21 E-value=4.4e+02 Score=29.82 Aligned_cols=203 Identities=13% Similarity=0.064 Sum_probs=100.1
Q ss_pred HHHHHHHcCCCeEEEEee-chhHHHHHHHHHHHHHhcCCcEEEeeccch--hc---ccCCC-CCCcEEEEEcCCCCCHHH
Q 006659 310 KDHLKTIRRSRRIVFIGC-GTSYNAALAARPILEELSDLPVTMEIASDL--VD---RQAPI-YREDTAVFVSQSGETADT 382 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~-G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~--~~---~~~~~-~~~dlvI~iS~SG~t~e~ 382 (636)
+.+++.|++..-=+++|. |++. ..+...+.+. ++.... .-+|. .+ ..... .+-.++++.|-.| ....
T Consensus 6 ~~lv~~L~~~GV~~VFGiPG~~i---~~~~dal~~~-~i~~I~-~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPG-atN~ 79 (550)
T COG0028 6 EALVEALEANGVDTVFGIPGGSI---LPLYDALYDS-GIRHIL-VRHEQGAAFAADGYARATGKPGVCLVTSGPG-ATNL 79 (550)
T ss_pred HHHHHHHHHcCCcEEEeCCCccH---HHHHHHHHhC-CCcEEE-eccHHHHHHHHHHHHHHcCCCEEEEECCCCc-HHHH
Confidence 345556655555556666 5553 3333334333 333222 12221 11 11112 2334555555555 6688
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCccccc-----cCee-EEcCCCCcccccchhhHHHHHHHHHHHHHHHh--cCCCC---
Q 006659 383 LQALEYASENGALCVGITNTVGSAIARK-----THCG-VHINAGAEIGVASTKAYTSQIVVMAMLALAIG--GDTIS--- 451 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~~~~s~La~~-----ad~~-l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~--~~~~~--- 451 (636)
+..+-.|..-+.++|+||+...+..... .|.. +.-+..+.. ....-...+.-..-=+...+ ...+.
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~---~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i 156 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYN---FEVRSPEDIPEVVARAFRIALSGRPGPVVV 156 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeE---EEeCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 8899999999999999999766554332 2211 111111100 00001112221111122222 22221
Q ss_pred -cHHHHHHHHHHHhhh--HHHHHHHHh-c--h-HHHHHHHHHhcCCC-eEEEEeCCCCHHHHHHHHHHHHHhcccccccc
Q 006659 452 -TQARREAIIDGLCDL--PNKVREVLK-L--D-QEMKVLAKQLIAEQ-SLLVFGRGYNYATALEGALKVKEVALMHSEGI 523 (636)
Q Consensus 452 -~~~~~~~~~~~l~~l--~~~~~~~~~-~--~-~~~~~~a~~l~~~~-~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~ 523 (636)
...+.... +...- ......... . . +.+++.++.+..++ .++++|.|..++-|.+....|.|...+|...-
T Consensus 157 ~iP~Dv~~~--~~~~~~~~~~~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t 234 (550)
T COG0028 157 DLPKDVLAA--EAEEPGPEPAILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTT 234 (550)
T ss_pred EcChhHhhc--ccccccccccccccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEc
Confidence 11111100 00000 000000011 1 1 55778888886664 89999999999999999999999999886543
No 257
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=33.03 E-value=87 Score=30.05 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=65.1
Q ss_pred cCCCCcCeeEeCCCCCCCCCCC-----CCCCCCCCcEEEeecccch-hhhhHHHHHHhhhhhccccccccceEEEeeecC
Q 006659 33 RGYDSAGICIDDSSSPSPLPSP-----SSSVNGCPPLVFRQEGNIE-SLVKSVYEEVAETELNLEESFSIHAGIAHTRWA 106 (636)
Q Consensus 33 RG~d~~Gi~~~~~~~~~~~~~~-----~~~~~~~~~~~~k~~g~~~-~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~a 106 (636)
--||++-++..++.-.++|.-+ +..-+|+.+.+||...... ++. .---|.||.
T Consensus 50 N~~D~~~~~mD~~~~n~Tv~~~L~k~~tnl~~G~~L~~~~~A~~s~~n~~---------------------~~A~~S~~~ 108 (284)
T COG5636 50 NEPDYCWIKMDSSKLNQTVSIPLKKKKTNLQSGSKLPTFKKASSSTSNLP---------------------KKADHSRQP 108 (284)
T ss_pred cCCceEEEEcccchhhccccchhhhhhcccCCCCcccceecccccccccc---------------------chhhhcCCc
Confidence 3468887777665323333222 3455689999998755322 211 112388998
Q ss_pred CCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCC-CccccCCHhhHH
Q 006659 107 THGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHG-FTFESETDTEVI 161 (636)
Q Consensus 107 T~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g-~~~~~~tDsE~i 161 (636)
......+--.-||.........=+-||.+.+-.+++..|.... +-.+.++|-+.|
T Consensus 109 I~~~t~~~~~~~~k~~t~P~~~~~~d~~~edk~~~~~~l~S~~q~~~~~dtd~~~i 164 (284)
T COG5636 109 IVKETDSFKPPSFKMTTEPKVYRVVDDLMEDKEELRKLLRSKAQYMMRKDTDPRTI 164 (284)
T ss_pred eeecCccccCCCccceecceEEeecccccccHHHHHHHHhhhhHhhhccCCChhhh
Confidence 7765544555666554222345567999999999988887543 223556676665
No 258
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.02 E-value=6.1e+02 Score=27.85 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcC--CCeEEEEeCCCCHHHHHHHHHHHHHhcc----ccccccccccccccccccccCCCCeEEEEe-CCc
Q 006659 478 QEMKVLAKQLIA--EQSLLVFGRGYNYATALEGALKVKEVAL----MHSEGILAGEMKHGPLALVDENLPILVIAT-RDA 550 (636)
Q Consensus 478 ~~~~~~a~~l~~--~~~~~~lG~G~~~~~A~e~alKl~E~~~----~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~-~~~ 550 (636)
+.+++++..+.. .+.++++|-|-++--+.....-+..-.. ++-.+.-.+...+=.+..+++.+.+|++.+ .+.
T Consensus 65 ~~~~~f~~~~~~g~~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGt 144 (446)
T COG0166 65 KRMKAFADDVRSGKITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGT 144 (446)
T ss_pred HHHHHHHhhcccCccceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCC
Confidence 556677766654 7899999999886555544333444333 222233334555555666777766666665 344
Q ss_pred chHHHHH---HHHHHH----hcCCeEEEEecCCCCcC-CCCCCcceEEEcCC-CCc
Q 006659 551 CFSKQQS---VIQQLH----ARKGRLIVMCSKGDAAS-IFPGGSCRVIEVPQ-VED 597 (636)
Q Consensus 551 ~~~~~~~---~~~~~~----~~g~~v~vi~~~~~~~~-~~~~~~~~~~~~p~-~~~ 597 (636)
+.|-+.. +.+.+. ....+.+++++++.... ........+|.+|. +..
T Consensus 145 T~Et~~n~~~~r~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGG 200 (446)
T COG0166 145 TLETLTNFRLARKWLEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGG 200 (446)
T ss_pred cHHHHHHHHHHHHHHHhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCCC
Confidence 4443322 111121 11334555555543322 11123467899984 443
No 259
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=32.44 E-value=3.4e+02 Score=32.30 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCcEEEEEc-CCCCCHHHH--HHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659 366 REDTAVFVS-QSGETADTL--QALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE 422 (636)
Q Consensus 366 ~~dlvI~iS-~SG~t~e~i--~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e 422 (636)
.-|++|++. ..-.+.-++ .+.+.++++|+++|.|-.......++.||..+.+..|.+
T Consensus 376 ~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~irPGtD 435 (797)
T PRK07860 376 KAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLRTAPGGE 435 (797)
T ss_pred hCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceeccCCCcH
Confidence 456666664 333332222 333445678999999976644447788998887655433
No 260
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=32.08 E-value=1.2e+02 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeec
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIA 354 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~ 354 (636)
.-++|+++|.|.|..++ ++.++.+ .|..+...+.
T Consensus 6 ~~~~v~viG~G~sG~s~--~a~~L~~-~G~~V~~~D~ 39 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSG--LAEVLLN-LGYKVSGSDL 39 (461)
T ss_pred CCCEEEEEEEchhhHHH--HHHHHHh-CCCeEEEECC
Confidence 44689999999996421 3455555 3666665553
No 261
>PLN02509 cystathionine beta-lyase
Probab=31.65 E-value=7.4e+02 Score=27.33 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=50.2
Q ss_pred HHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEE----cCCCCCHHHHHHHHH
Q 006659 314 KTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFV----SQSGETADTLQALEY 388 (636)
Q Consensus 314 ~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~i----S~SG~t~e~i~al~~ 388 (636)
..++..++|++.-. .|... ..+...+.+ .++.+...+..+.......+++++-+|.+ +-.|.-.++-++.+.
T Consensus 166 ~ll~~GD~VI~~~~--~y~~t~~ll~~~l~~-~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~l 242 (464)
T PLN02509 166 HLIKNGEEIVAGDD--VYGGSDRLLSQVVPR-SGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEM 242 (464)
T ss_pred HHhCCCCEEEEcCC--chhhHHHHHHHHHHH-CCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHH
Confidence 33556677765333 22211 122233333 35544444333332222334555544432 345778888899999
Q ss_pred HHHcCCeEEEE----EcCCCCccccccCeeEEc
Q 006659 389 ASENGALCVGI----TNTVGSAIARKTHCGVHI 417 (636)
Q Consensus 389 ak~~g~~vi~I----T~~~~s~La~~ad~~l~~ 417 (636)
|+++|+.+|.= +.....|+...+|+++.-
T Consensus 243 Ak~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S 275 (464)
T PLN02509 243 AHAQGALVLVDNSIMSPVLSRPLELGADIVMHS 275 (464)
T ss_pred HHHcCCEEEEECCccccccCChhhcCCcEEEec
Confidence 99999876631 111123344457765544
No 262
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=31.52 E-value=61 Score=30.17 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=39.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccC
Q 006659 367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTH 412 (636)
Q Consensus 367 ~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad 412 (636)
+..+|..-..--|+|+.+-+..+|+.|++++.++|+..+..+..+.
T Consensus 36 DNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~ 81 (175)
T COG2179 36 DNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAE 81 (175)
T ss_pred cCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhh
Confidence 4456677777779999999999999999999999998888887665
No 263
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=31.38 E-value=1e+02 Score=30.10 Aligned_cols=49 Identities=22% Similarity=0.153 Sum_probs=40.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q 006659 367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVH 416 (636)
Q Consensus 367 ~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~ 416 (636)
-|++|++-.|+...-.-.+++.++++|+++|.|--. .++....+|+.+.
T Consensus 168 ~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~-~~~~~~~~d~~~~ 216 (218)
T cd01407 168 ADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLE-PTPADRKADLVIL 216 (218)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCC-CCCCCccceEEEe
Confidence 489999999999888889999999999988888654 6677777787653
No 264
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.30 E-value=34 Score=28.94 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHcCCeEEEEEcCCCCcccccc
Q 006659 379 TADTLQALEYASENGALCVGITNTVGSAIARKT 411 (636)
Q Consensus 379 t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~a 411 (636)
-+...++++..+++|.+++.+||+...+-..++
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~ 48 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYA 48 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHH
Confidence 356789999999999999999998655544443
No 265
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=31.06 E-value=1.1e+02 Score=30.57 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=40.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q 006659 364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVH 416 (636)
Q Consensus 364 ~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~ 416 (636)
+.+-|++|++-.|....-.-.....|+++|+++|.|-.. .++....+|..+.
T Consensus 170 ~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~-~~~~~~~~~~~i~ 221 (242)
T PTZ00408 170 MSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLE-EGTNYSQFDESIY 221 (242)
T ss_pred HHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCC-CCCCCccCCEEEE
Confidence 346789999999999888889999999999999888665 3345556676553
No 266
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=30.68 E-value=2.7e+02 Score=26.17 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCeEEEEeechhHH---HHHHHHHHHHHhcCCcEEEeec-------cchhcccCCC---------------
Q 006659 310 KDHLKTIRRSRRIVFIGCGTSYN---AALAARPILEELSDLPVTMEIA-------SDLVDRQAPI--------------- 364 (636)
Q Consensus 310 ~~~~~~l~~~~~I~i~G~G~S~~---aa~~~~~~~~~~~~~~~~~~~~-------~e~~~~~~~~--------------- 364 (636)
+.+++.|++++|.+++--+.-.. +...+..+.+++ ++++..... ......+..+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl-~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~ 103 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKA-NIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGL 103 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHH-CCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhh
Q ss_pred ---CCCcEEEEE-cCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCcccccc
Q 006659 365 ---YREDTAVFV-SQSGETADTLQALEYASENGALCVGITNTVGSAIARKT 411 (636)
Q Consensus 365 ---~~~dlvI~i-S~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~a 411 (636)
.+-|++|++ +.-..+..++..+|.... .++|+|...- .|=|.++
T Consensus 104 ~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~--~~~~~~~~~y-~~~a~~s 151 (171)
T PRK00945 104 DGNGNYDLVIFIGVTYYYASQGLSALKHFSP--LKTITIDRYY-HPNADMS 151 (171)
T ss_pred cCCCCcCEEEEecCCchhHHHHHHHHhhcCC--ceEEEecCCc-CCCCcee
No 267
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=30.31 E-value=7.1e+02 Score=26.74 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=18.8
Q ss_pred cCCCCCHHHHHHHHHHHHcCCeEE
Q 006659 374 SQSGETADTLQALEYASENGALCV 397 (636)
Q Consensus 374 S~SG~t~e~i~al~~ak~~g~~vi 397 (636)
+..|...++-++.+.|+++|+.+|
T Consensus 166 Nptg~v~dl~~I~~la~~~g~~vi 189 (403)
T PRK07810 166 NPMQSLVDIAAVSELAHAAGAKVV 189 (403)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEE
Confidence 345777788889999999997665
No 268
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=30.29 E-value=90 Score=29.96 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=32.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q 006659 370 AVFVSQSGETADTLQALEYASENGALCVGITNTVGSA 406 (636)
Q Consensus 370 vI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~ 406 (636)
+.+--.||+|.++++.++..+.+|.+|+..|..-++.
T Consensus 9 i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 9 IYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred EEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 3445689999999999999999999999999987765
No 269
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=29.55 E-value=85 Score=29.25 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=37.3
Q ss_pred EEEEcCCCC---CHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCee
Q 006659 370 AVFVSQSGE---TADTLQALEYASENGALCVGITNTVGSAIARKTHCG 414 (636)
Q Consensus 370 vI~iS~SG~---t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~ 414 (636)
|-+|...|+ ...+-+|++.|.+.|.-.|.|+.+...|.++.-|+.
T Consensus 21 vrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYG 68 (176)
T COG0290 21 VRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYG 68 (176)
T ss_pred EEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeeecc
Confidence 455566665 345679999999999999999999999999988864
No 270
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=29.28 E-value=1.1e+02 Score=37.08 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=20.1
Q ss_pred ceEEEEEe-cccccchhhHHHHHHHHHHhccccC
Q 006659 2 CGIFAYLN-YGVNRERRYILQVLFNGLRRLEYRG 34 (636)
Q Consensus 2 cGI~g~~~-~~~~~~~~~~~~~l~~~l~~l~~RG 34 (636)
||+ |++. ..+..+ ..+......||..|.|||
T Consensus 79 CGV-GFvanl~g~~s-hkivtDA~~~L~~MtHRG 110 (2142)
T KOG0399|consen 79 CGV-GFVANLKGETS-HKIVTDARIMLGRMTHRG 110 (2142)
T ss_pred ccc-eeEEecCCccc-cchHHHHHHHHHhhhccC
Confidence 776 5553 333222 245567778999999999
No 271
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.20 E-value=58 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCC
Q 006659 380 ADTLQALEYASENGALCVGITNTV 403 (636)
Q Consensus 380 ~e~i~al~~ak~~g~~vi~IT~~~ 403 (636)
....+.++.|+++|...++||+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC
Confidence 346789999999999999999973
No 272
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.12 E-value=2.7e+02 Score=31.64 Aligned_cols=37 Identities=11% Similarity=0.274 Sum_probs=25.2
Q ss_pred CCeEEEEeCCc--chHHHHHHHHHHHhcCCeEEEEecCC
Q 006659 540 LPILVIATRDA--CFSKQQSVIQQLHARKGRLIVMCSKG 576 (636)
Q Consensus 540 ~~vi~l~~~~~--~~~~~~~~~~~~~~~g~~v~vi~~~~ 576 (636)
.-+|++.+.++ ...++...+.+.+++|+++++|+...
T Consensus 164 ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~ 202 (574)
T cd02767 164 TDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLR 202 (574)
T ss_pred CCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCc
Confidence 44566655444 34456666777888999999998643
No 273
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=29.03 E-value=1.6e+02 Score=28.33 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=38.3
Q ss_pred cCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch--hcccCCCCCCcEEEEEcCCCCCHHHHHHHH
Q 006659 317 RRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL--VDRQAPIYREDTAVFVSQSGETADTLQALE 387 (636)
Q Consensus 317 ~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~i~al~ 387 (636)
..+. +++.+.+.........+. ..+ ++.+.+.+..+. .+.+..+..+++.|+||.+|.++-+-..++
T Consensus 69 ~~ad-lViaaT~d~elN~~i~~~-a~~--~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr 137 (202)
T PRK06718 69 VDAF-LVIAATNDPRVNEQVKED-LPE--NALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIR 137 (202)
T ss_pred CCce-EEEEcCCCHHHHHHHHHH-HHh--CCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHH
Confidence 3444 566666655432222222 232 345555443333 233445678999999999999996665544
No 274
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=28.95 E-value=1.2e+02 Score=32.17 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=48.3
Q ss_pred CCCeEEEE---eechhHHHHHHHHHHHHHhcCCc-EEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHc-
Q 006659 318 RSRRIVFI---GCGTSYNAALAARPILEELSDLP-VTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASEN- 392 (636)
Q Consensus 318 ~~~~I~i~---G~G~S~~aa~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~- 392 (636)
+.++|.+. |+|+|..-|..++..+++. ++. +.+.+.. . .....+.|++|... ++.++||++
T Consensus 377 ~v~~iifaCDAGMGSSAMGAsilrkk~k~a-gl~~I~V~n~A---I-n~Lp~d~d~VITh~---------~LtdRak~k~ 442 (472)
T COG2213 377 NVKKIIFACDAGMGSSAMGASILRKKLKNA-GLNDISVTNYA---I-NNLPADADLVITHK---------DLTDRAKRKV 442 (472)
T ss_pred ceeEEEEEEcCCCChhhhhHHHHHHHHHhC-CCCceeEeehh---h-hcCCccccEEEEhH---------HhhHHHHhcC
Confidence 45566553 7999999999998888885 444 5554321 0 11112355665432 445577764
Q ss_pred -CCeEEEEEcCCCCcc
Q 006659 393 -GALCVGITNTVGSAI 407 (636)
Q Consensus 393 -g~~vi~IT~~~~s~L 407 (636)
.+..+.|+|..+++.
T Consensus 443 p~A~hisi~nFL~s~~ 458 (472)
T COG2213 443 PDAQHISINNFLDSPK 458 (472)
T ss_pred CCCeEEeHHhhcccHh
Confidence 789999999888764
No 275
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=28.86 E-value=3.5e+02 Score=28.87 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCCCcEEEE----EcCCCCCHHHHHHHHHHHHcCCeEEEEEcCC------CCccccccCeeEE
Q 006659 364 IYREDTAVF----VSQSGETADTLQALEYASENGALCVGITNTV------GSAIARKTHCGVH 416 (636)
Q Consensus 364 ~~~~dlvI~----iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~------~s~La~~ad~~l~ 416 (636)
+++++-+|+ .+..|...++-++.+.|+++|+.+|. ++. ..|+.--+|+++.
T Consensus 132 i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~liv--D~t~a~g~~~~pl~~gaDivv~ 192 (377)
T TIGR01324 132 IQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMI--DNTWAAGLLFKPLEHGVDISIQ 192 (377)
T ss_pred cCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEE--ECCCccccccCccccCceEEEe
Confidence 445544444 34557777788889999999976653 333 2244444675543
No 276
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=28.83 E-value=74 Score=25.47 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCC---HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCe
Q 006659 368 DTAVFVSQSGET---ADTLQALEYASENGALCVGITNTVGSAIARKTHC 413 (636)
Q Consensus 368 dlvI~iS~SG~t---~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~ 413 (636)
..|-+|...|+. -.+-+|++.|++.|...|.|..+...|+.++.|+
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~dy 61 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMDY 61 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-H
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEech
Confidence 344455556654 3567999999999999999999888898888774
No 277
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=28.77 E-value=78 Score=29.40 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=28.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcC
Q 006659 370 AVFVSQSGETADTLQALEYASENGALCVGITNT 402 (636)
Q Consensus 370 vI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~ 402 (636)
+++.|.||+|.-+-++++..+++|.++-.|=..
T Consensus 7 ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 7 IVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred EEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 567799999999999999999999988777654
No 278
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=28.72 E-value=4.1e+02 Score=31.07 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCcEEEEEcCCC-C-CHHHHHHHHHHHH-cCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHH
Q 006659 365 YREDTAVFVSQSG-E-TADTLQALEYASE-NGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAML 441 (636)
Q Consensus 365 ~~~dlvI~iS~SG-~-t~e~i~al~~ak~-~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL 441 (636)
...|++++|-..- + -+-+-.-++.|.+ +|.++|.+--. .+.+++.||+.+....|.. ++.+..+
T Consensus 419 e~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R-~~emaerAdlf~~pkpGtd------------~a~l~Av 485 (978)
T COG3383 419 EGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPR-KHEMAERADLFLHPKPGTD------------LAWLTAV 485 (978)
T ss_pred hhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccc-hhHHHHhhhcccCCCCCcc------------HHHHHHH
Confidence 3566777774433 2 2334455677777 89998888765 8899999998776543322 2222222
Q ss_pred HHHHhcCCCCcHH-------HHHHHHHHHhhhH-HHHHHHHhc-hHHHHHHHHHhcCCCe-EEEEeCC-------CCHHH
Q 006659 442 ALAIGGDTISTQA-------RREAIIDGLCDLP-NKVREVLKL-DQEMKVLAKQLIAEQS-LLVFGRG-------YNYAT 504 (636)
Q Consensus 442 ~~~~~~~~~~~~~-------~~~~~~~~l~~l~-~~~~~~~~~-~~~~~~~a~~l~~~~~-~~~lG~G-------~~~~~ 504 (636)
+-.+-.+...+.. .++++.+.+.... +..++.--. .+.+.++|+.+...+. .++.|.| ..-.+
T Consensus 486 akyiideGl~D~~Fi~er~~~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~mGvTqh~~GsdTs~ 565 (978)
T COG3383 486 AKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWGMGVTQHSGGSDTST 565 (978)
T ss_pred HHHHHhCCcchHHHHHhhcccHHHHHHHhhccCHHHHHhhcCCCHHHHHHHHHHHhccCceEEEEEccccccccCccHHH
Confidence 3222222111111 1333333333322 222222222 6778889988877754 4455555 23344
Q ss_pred HHHHHHHHHHhcccccc
Q 006659 505 ALEGALKVKEVALMHSE 521 (636)
Q Consensus 505 A~e~alKl~E~~~~~a~ 521 (636)
|.---|.+.=+-+.|..
T Consensus 566 aisNLll~TGN~Grpg~ 582 (978)
T COG3383 566 AISNLLLLTGNYGRPGA 582 (978)
T ss_pred HHHHHHHHhcccCCCCC
Confidence 44444455555555544
No 279
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=28.69 E-value=2.5e+02 Score=31.47 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=57.9
Q ss_pred HHHHhcCCCeEE----EEeCCCCHHHHHHHHH--HHHHhcc-------------ccccccccccccccccccc------c
Q 006659 483 LAKQLIAEQSLL----VFGRGYNYATALEGAL--KVKEVAL-------------MHSEGILAGEMKHGPLALV------D 537 (636)
Q Consensus 483 ~a~~l~~~~~~~----~lG~G~~~~~A~e~al--Kl~E~~~-------------~~a~~~~~~Ef~HGp~~~~------~ 537 (636)
+-+...+.+.+. .=+.|...|+|.|-|+ -|.+... ..|-.|++++..---..++ .
T Consensus 336 irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~DAeyh~~KRrPskAPfYeleDvtrDl~~aLED~~RhG 415 (715)
T COG1107 336 IRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRDLNFALEDAHRHG 415 (715)
T ss_pred HHHHHhcCCceEEecccCcccccchhhHHHHHHHHHHHhCCChhhhhHHhhcCcccCCceeHHhhhhhHHHHHHHHHhcC
Confidence 333334444443 3478899999998887 3444432 2244455554332222222 2
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCC
Q 006659 538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKG 576 (636)
Q Consensus 538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~ 576 (636)
.+.|+++|..+|.+.+.+ -.++.++.+|..++||+..-
T Consensus 416 qKlPL~VlvDnGsTeEDi-pA~~~~k~Ygi~ivVVDHH~ 453 (715)
T COG1107 416 QKLPLLVLVDNGSTEEDI-PAIKQLKAYGIDIVVVDHHY 453 (715)
T ss_pred CccceEEEEcCCCccccc-HHHHHHHhcCCCEEEEcCCC
Confidence 467899998888876654 35677888999999998754
No 280
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=28.47 E-value=2e+02 Score=31.38 Aligned_cols=207 Identities=16% Similarity=0.098 Sum_probs=111.5
Q ss_pred CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-------hcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHc
Q 006659 320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-------VDRQAPIYREDTAVFVSQSGETADTLQALEYASEN 392 (636)
Q Consensus 320 ~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~ 392 (636)
.---|+|.|.-.-.++.++..-.. +++.-. -+|. .+......++-..+.-|.......++.++..|.-+
T Consensus 33 GvfaIFGHGNVaGiGeAL~~~~~~---l~~yqg-~NEQgMAhaAiayaKq~~Rrr~~A~tsSiGPGA~NmvTaAalA~~N 108 (617)
T COG3962 33 GVFAIFGHGNVAGIGEALYQVRDH---LPTYQG-HNEQGMAHAAIAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVN 108 (617)
T ss_pred eeeEEecCcchhhhHHHHHhCccc---cchhhc-ccHhHHHHHHHHHHHHHhhceeeEEecccCCcHHHHHHHHHHHHhh
Confidence 345688998887666666554322 222211 1121 11222345666777778888899999999999999
Q ss_pred CCeEEEEEcC------CCCcccc---ccCeeEEcCCC--CcccccchhhHHHHHHHHHHHHHHHhcCCCC----cHHHHH
Q 006659 393 GALCVGITNT------VGSAIAR---KTHCGVHINAG--AEIGVASTKAYTSQIVVMAMLALAIGGDTIS----TQARRE 457 (636)
Q Consensus 393 g~~vi~IT~~------~~s~La~---~ad~~l~~~~~--~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~----~~~~~~ 457 (636)
..+++.+-.. ++.-|.+ ..|..|.++.. +-..+-...+..-|++....=++.+.-...+ .-.-.+
T Consensus 109 rlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~Q 188 (617)
T COG3962 109 RLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQ 188 (617)
T ss_pred cCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEech
Confidence 9999988542 2222222 34444443321 0000111122234444444444444433211 000111
Q ss_pred HHHHHHhhhHHHHHH-HH---h----chHHHHHHHHHhcC-CCeEEEEeCCCCHHHHHHHHHHHHHhcccccccc----c
Q 006659 458 AIIDGLCDLPNKVRE-VL---K----LDQEMKVLAKQLIA-EQSLLVFGRGYNYATALEGALKVKEVALMHSEGI----L 524 (636)
Q Consensus 458 ~~~~~l~~l~~~~~~-~~---~----~~~~~~~~a~~l~~-~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~----~ 524 (636)
+...+.-..|+.+-+ -+ + .+.+....++.++. .+.+++.|.|..|+-|.+.-..|.|...+|..-- .
T Consensus 189 DVq~eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQaGKs 268 (617)
T COG3962 189 DVQAEAYDYPESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKS 268 (617)
T ss_pred hhhhhhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccCCcc
Confidence 112222233333322 11 1 12334444445544 4689999999999999999999999999987543 4
Q ss_pred cccccc
Q 006659 525 AGEMKH 530 (636)
Q Consensus 525 ~~Ef~H 530 (636)
.-+|.|
T Consensus 269 al~~dh 274 (617)
T COG3962 269 ALAWDH 274 (617)
T ss_pred cccccC
Confidence 457777
No 281
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.42 E-value=2e+02 Score=31.26 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=21.1
Q ss_pred CCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 319 SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
.++|+|+|.|.|..++. .++.+. |..+...+
T Consensus 6 ~~~i~v~G~G~sG~s~~---~~l~~~-G~~v~~~D 36 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCV---DFFLAR-GVTPRVID 36 (438)
T ss_pred CCEEEEEeeCHHHHHHH---HHHHHC-CCeEEEEc
Confidence 47899999999987665 345553 55555544
No 282
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.33 E-value=1.9e+02 Score=24.06 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=44.5
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccc---cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCe
Q 006659 492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALV---DENLPILVIATRDACFSKQQSVIQQLHARKGR 568 (636)
Q Consensus 492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~---~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~ 568 (636)
.+++.|+|. ++.. .+.|++|.+.-.-..+ ++.|.++..+ .++.-++++.|. .+....++.+.+...+.+
T Consensus 6 ILl~C~~G~--sSS~-l~~k~~~~~~~~gi~~---~v~a~~~~~~~~~~~~~Dvill~pq--i~~~~~~i~~~~~~~~ip 77 (95)
T TIGR00853 6 ILLLCAAGM--STSL-LVNKMNKAAEEYGVPV---KIAAGSYGAAGEKLDDADVVLLAPQ--VAYMLPDLKKETDKKGIP 77 (95)
T ss_pred EEEECCCch--hHHH-HHHHHHHHHHHCCCcE---EEEEecHHHHHhhcCCCCEEEECch--HHHHHHHHHHHhhhcCCC
Confidence 455666665 4544 5578888876433332 4445444322 233445555542 333444445555666889
Q ss_pred EEEEecCCCCc
Q 006659 569 LIVMCSKGDAA 579 (636)
Q Consensus 569 v~vi~~~~~~~ 579 (636)
+.+|+......
T Consensus 78 v~~I~~~~Y~~ 88 (95)
T TIGR00853 78 VEVINGAQYGK 88 (95)
T ss_pred EEEeChhhccc
Confidence 99988766543
No 283
>PRK07050 cystathionine beta-lyase; Provisional
Probab=27.57 E-value=4.2e+02 Score=28.38 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcCCC----CCHHHHHHHHHHHHcCCeEE
Q 006659 364 IYREDTAVFVSQSG----ETADTLQALEYASENGALCV 397 (636)
Q Consensus 364 ~~~~dlvI~iS~SG----~t~e~i~al~~ak~~g~~vi 397 (636)
+++++-+|.+...+ ...++-+..+.|+++|+.+|
T Consensus 147 i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~li 184 (394)
T PRK07050 147 IQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTA 184 (394)
T ss_pred cCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEE
Confidence 44555555554443 56677788888999997665
No 284
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=27.53 E-value=2.6e+02 Score=33.11 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCCcEEEEEc-CCCC-CHHHH---HHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHH
Q 006659 365 YREDTAVFVS-QSGE-TADTL---QALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMA 439 (636)
Q Consensus 365 ~~~dlvI~iS-~SG~-t~e~i---~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~ 439 (636)
..-|++|++. ...+ ++-.. ...+.++++|+++|+|-.. .+.-++.+|..|.+..|.+. . +++.
T Consensus 198 ~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~-~t~Ta~~ad~~l~irPGTD~-------A----l~~g 265 (765)
T COG0243 198 ENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPR-RTETAALADLWLPIRPGTDA-------A----LALG 265 (765)
T ss_pred hcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCC-CChhHHhhCCccccCCCcHH-------H----HHHH
Confidence 3455666664 3444 33233 2555567788898888765 77778889987766554332 1 1111
Q ss_pred HHHHHHhcCCCCcHHHHHHHH-HHHh-------------hhHHHHHHHHhchHHHHHHHHHhcCCC-eEEEEeCCCC
Q 006659 440 MLALAIGGDTISTQARREAII-DGLC-------------DLPNKVREVLKLDQEMKVLAKQLIAEQ-SLLVFGRGYN 501 (636)
Q Consensus 440 lL~~~~~~~~~~~~~~~~~~~-~~l~-------------~l~~~~~~~~~~~~~~~~~a~~l~~~~-~~~~lG~G~~ 501 (636)
++-..+ ....-+.+.+++.. ..++ .-++.+++..-..+.++++|+.+...+ .+++.|.|..
T Consensus 266 i~~~li-~~~~~D~~Fl~~~t~~g~~~~~~~~~~~~~~~~t~e~~~~itGv~~~I~~~A~~~a~~~~~~~~~g~G~~ 341 (765)
T COG0243 266 IAHVLI-EENLYDEEFLAKYTNVGFDEFAYLLGLEDAEAKTPEWAEAITGVAEEIRQLARLFAAAKPVTILWGMGIQ 341 (765)
T ss_pred HHHHHH-HcCcccHHHHHHHhhcccchhhhhccccccccCCHHHHHHhhhHHHHHHHHHHHHhcCCceEEeeccchh
Confidence 222222 22212233333333 1111 333333332111567888999887776 7888898864
No 285
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=27.52 E-value=3e+02 Score=32.41 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhcC--CCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccc--------------ccc--C
Q 006659 477 DQEMKVLAKQLIA--EQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLA--------------LVD--E 538 (636)
Q Consensus 477 ~~~~~~~a~~l~~--~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~--------------~~~--~ 538 (636)
++....+|++++. .+.+.++++|....-+.....+|....+.+-.. ....+.|.+-. .++ +
T Consensus 119 dEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~-~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~ 197 (743)
T TIGR01701 119 DDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLP-DCSNMCHEPSSVALKRSIGIGKGSVNLEDFE 197 (743)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcC-CCcccccchhhHHHHHhcCCCCCCCCHhHHH
Confidence 3344445555433 356666776654333334445666654432111 12233443210 111 2
Q ss_pred CCCeEEEEeCCc--chHHHHHHHHHHHhcCCeEEEEecCC
Q 006659 539 NLPILVIATRDA--CFSKQQSVIQQLHARKGRLIVMCSKG 576 (636)
Q Consensus 539 ~~~vi~l~~~~~--~~~~~~~~~~~~~~~g~~v~vi~~~~ 576 (636)
+.-+|++.+.++ ...++...+++.+++|+++++|+...
T Consensus 198 ~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~ 237 (743)
T TIGR01701 198 HTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLR 237 (743)
T ss_pred hCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 344555555443 44566666777888999999998643
No 286
>PRK05939 hypothetical protein; Provisional
Probab=27.47 E-value=4.5e+02 Score=28.22 Aligned_cols=53 Identities=30% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCcEEEeeccchhcccCCCCCCcEEEEEcC----CCCCHHHHHHHHHHHHcCCeEEE
Q 006659 346 DLPVTMEIASDLVDRQAPIYREDTAVFVSQ----SGETADTLQALEYASENGALCVG 398 (636)
Q Consensus 346 ~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~----SG~t~e~i~al~~ak~~g~~vi~ 398 (636)
++.+...+..+.......+++++-+|.+.. .|...++-++.+.|+++|+.+|.
T Consensus 110 G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 110 GVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred CCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 555544444333222223455555555533 45667888889999999976553
No 287
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=27.26 E-value=3.4e+02 Score=29.07 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCCcEEEEE----cCCCCCHHHHHHHHHHHHcCCeEE
Q 006659 364 IYREDTAVFV----SQSGETADTLQALEYASENGALCV 397 (636)
Q Consensus 364 ~~~~dlvI~i----S~SG~t~e~i~al~~ak~~g~~vi 397 (636)
+++++-+|.+ +-.|...++-++.+.|+++|+.+|
T Consensus 143 i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~li 180 (390)
T PRK08133 143 VRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLV 180 (390)
T ss_pred cCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEE
Confidence 4455544443 335777788888999999997665
No 288
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=27.21 E-value=1.5e+02 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCCCCcEEEEEcCCCC-C---HHHHHHHHHHHHcCCeEE-EEEc
Q 006659 363 PIYREDTAVFVSQSGE-T---ADTLQALEYASENGALCV-GITN 401 (636)
Q Consensus 363 ~~~~~dlvI~iS~SG~-t---~e~i~al~~ak~~g~~vi-~IT~ 401 (636)
.+..+|++|+-|.+.. + -|++-++..+|+.|++.| +|-.
T Consensus 44 ~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViP 87 (116)
T PF13793_consen 44 SVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIP 87 (116)
T ss_dssp --TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEES
T ss_pred cccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 4556788888887764 1 356667778888887544 4443
No 289
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.94 E-value=6.9e+02 Score=29.45 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=32.7
Q ss_pred CCcEEEEE-cCCCCCHH-----HHHHHHHHHHcCCeEEEEEcCCCCccc---cccCeeEEcCCCC
Q 006659 366 REDTAVFV-SQSGETAD-----TLQALEYASENGALCVGITNTVGSAIA---RKTHCGVHINAGA 421 (636)
Q Consensus 366 ~~dlvI~i-S~SG~t~e-----~i~al~~ak~~g~~vi~IT~~~~s~La---~~ad~~l~~~~~~ 421 (636)
.-+++|++ |....+.- ...+++..+++|+++|+|-.. -+..+ ..||..|.+..|.
T Consensus 211 ~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr-~t~ta~~~~~Ad~wlpIrPGT 274 (735)
T cd02758 211 NAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPV-LPNTTSAAGENIRWVPIKPGG 274 (735)
T ss_pred hCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCC-CCccccccccCCEEECCCCCc
Confidence 34566665 33333322 233333333479999999876 55566 8899988775543
No 290
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=26.53 E-value=1.1e+02 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Q 006659 366 REDTAVFVSQSGETADTLQALEY 388 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ 388 (636)
.+.|-|+||..|.++..-..++.
T Consensus 2 ~g~LqI~ISTnG~sP~la~~iR~ 24 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLARLIRK 24 (30)
T ss_dssp -TTEEEEEEESSS-HHHHHHHHH
T ss_pred CCCeEEEEECCCCChHHHHHHHH
Confidence 46789999999999987776654
No 291
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=26.31 E-value=4.6e+02 Score=28.74 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=31.3
Q ss_pred cccccccC-CCCeEEEEeCCcchHHHHH---HHHHHHh----cCCeEEEEecCCCCcCCC--CCCcceEEEcCC-CCc
Q 006659 531 GPLALVDE-NLPILVIATRDACFSKQQS---VIQQLHA----RKGRLIVMCSKGDAASIF--PGGSCRVIEVPQ-VED 597 (636)
Q Consensus 531 Gp~~~~~~-~~~vi~l~~~~~~~~~~~~---~~~~~~~----~g~~v~vi~~~~~~~~~~--~~~~~~~~~~p~-~~~ 597 (636)
.-+..+++ +|.++++.=.+.+.|-+.. +.+.+++ .+.++++||+.+...+.. ...+-.+|.+|. +..
T Consensus 124 ~~l~~l~~~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~~~g~~~f~ip~~VGG 201 (446)
T PRK00973 124 SILDVIDLEKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAEKEGYRTLEIPENVGG 201 (446)
T ss_pred HHHHhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHHHcCCcEEeeCCCCCc
Confidence 33334564 4555555545666554331 2222321 355788888853211110 011235788884 444
No 292
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=25.95 E-value=62 Score=31.87 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=39.2
Q ss_pred CCCcEEEEEcCCC-----CCHHHHHHHHHHH-HcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659 365 YREDTAVFVSQSG-----ETADTLQALEYAS-ENGALCVGITNTVGSAIARKTHCGVHINAGA 421 (636)
Q Consensus 365 ~~~dlvI~iS~SG-----~t~e~i~al~~ak-~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~ 421 (636)
.+..++++===+| ++.+++++++... +.|..+|.+|. +..++..||.+|.+..|.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH--DPELAKYADRVIELKDGK 219 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCe
Confidence 3444555443333 3567778877764 56999999998 788999999999887764
No 293
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=25.75 E-value=2e+02 Score=28.31 Aligned_cols=66 Identities=6% Similarity=-0.124 Sum_probs=36.9
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch--hcccCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL--VDRQAPIYREDTAVFVSQSGETADTLQALEY 388 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ 388 (636)
.+++.+.+.... -..+...... .++.+...+..+. .+.+..+..++++|+||.+|.++-.-..++.
T Consensus 87 ~LViaATdD~~v-N~~I~~~a~~-~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~ 154 (223)
T PRK05562 87 HLIVIATDDEKL-NNKIRKHCDR-LYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGE 154 (223)
T ss_pred cEEEECCCCHHH-HHHHHHHHHH-cCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHH
Confidence 355555554432 2333333333 2444444332222 2334456789999999999999976655553
No 294
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=25.39 E-value=75 Score=29.67 Aligned_cols=33 Identities=33% Similarity=0.269 Sum_probs=26.8
Q ss_pred CCCHHHH-HHHHHHHHcCCeEEEEEcCCCCcccc
Q 006659 377 GETADTL-QALEYASENGALCVGITNTVGSAIAR 409 (636)
Q Consensus 377 G~t~e~i-~al~~ak~~g~~vi~IT~~~~s~La~ 409 (636)
|+-++++ .++++||+.|++-|.||+..+++-++
T Consensus 113 GYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASr 146 (174)
T COG3981 113 GYAKEMLKLALEKARELGIKKVLVTCDKDNIASR 146 (174)
T ss_pred CHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhh
Confidence 4556666 57899999999999999998887655
No 295
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.29 E-value=8.8e+02 Score=26.14 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=52.6
Q ss_pred cCCCeEEEEee--chhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCC-CCcEEEEE-cCC---CCCHHHHHHHHHH
Q 006659 317 RRSRRIVFIGC--GTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIY-REDTAVFV-SQS---GETADTLQALEYA 389 (636)
Q Consensus 317 ~~~~~I~i~G~--G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~dlvI~i-S~S---G~t~e~i~al~~a 389 (636)
+..++|++... |..+ ..+..++.+ .++.+...++.+.......+. +++-+|.+ |-| -+-.++-++.+.|
T Consensus 100 ~~GD~vl~~~~~YG~t~---~~~~~~l~~-~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 100 KAGDHVLLPDDLYGGTY---RLFEKILQK-FGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred CCCCEEEecCCccchHH---HHHHHHHHh-cCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHH
Confidence 34555555443 3333 233444444 467777666655422222233 46666665 322 2456777888999
Q ss_pred HHcCCeEEEEEcCCCCcc-----ccccCeeEEc
Q 006659 390 SENGALCVGITNTVGSAI-----ARKTHCGVHI 417 (636)
Q Consensus 390 k~~g~~vi~IT~~~~s~L-----a~~ad~~l~~ 417 (636)
++.| ..+.|=|.=.+|+ .--||+++.-
T Consensus 176 ~~~g-~~vvVDNTfatP~~q~PL~~GaDIVvhS 207 (396)
T COG0626 176 KAYG-ALVVVDNTFATPVLQRPLELGADIVVHS 207 (396)
T ss_pred HhcC-CEEEEECCcccccccChhhcCCCEEEEe
Confidence 9999 4555555545544 4448887754
No 296
>PRK04966 hypothetical protein; Provisional
Probab=24.90 E-value=2.5e+02 Score=22.21 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=42.0
Q ss_pred CCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeE
Q 006659 155 ETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNEL 211 (636)
Q Consensus 155 ~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l 211 (636)
.-+.|.+-++|+.+.-+.|-.-+....++.+.+..+.++|+-.=++++|+.. .+++
T Consensus 7 ~L~~eTL~nLIeefv~ReGTdyG~~E~sl~~kv~qv~~qL~~G~~viv~se~-~ESv 62 (72)
T PRK04966 7 DLAPETLENLIESFVLREGTDYGEHERSLEQKVADVKRQLQSGEAVLVWSEL-HETV 62 (72)
T ss_pred hCCHHHHHHHHHHHHhccCccCCcccccHHHHHHHHHHHHHcCCEEEEECCC-CCee
Confidence 3467888899988876654222344568999999999999988888899866 4555
No 297
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=24.87 E-value=8.5e+02 Score=26.11 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=61.5
Q ss_pred hHHHHHHHHhchHHHHHHHHHhcC---CCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccc----cccccC
Q 006659 466 LPNKVREVLKLDQEMKVLAKQLIA---EQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGP----LALVDE 538 (636)
Q Consensus 466 l~~~~~~~~~~~~~~~~~a~~l~~---~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp----~~~~~~ 538 (636)
+.+.++++++..+.++.++..+.. ..+.+++|.|-. |.++|.-+.|..+.+-.+.-..-+-|+- ++.++.
T Consensus 10 l~~~~~aav~aadP~r~~~~~lp~~~p~gr~~Vig~GKA---s~~MA~a~~~~~~~~~~GvVVt~~g~~~~~~~ieViea 86 (422)
T COG2379 10 LLELFDAAVAAADPYRALAAHLPVLPPKGRTIVIGAGKA---SAEMARAFEEHWKGPLAGVVVTPYGYGGPCPRIEVIEA 86 (422)
T ss_pred HHHHHHHHHHhcCHHHHHHhhCCCCCCCCceEEEecchh---HHHHHHHHHHHhccccCceEeccCccCCCCCceeEEeC
Confidence 335566666666777888887765 568999999864 4556666777776666666666555543 444555
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHHHhcC--CeEEEEecCC
Q 006659 539 NLPILVIATRDACFSKQQSVIQQLHARK--GRLIVMCSKG 576 (636)
Q Consensus 539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g--~~v~vi~~~~ 576 (636)
.+|| |+.......+++++.+...+ ..|+++-+.+
T Consensus 87 ~HPv----PDe~s~~asrrlL~~v~~l~e~D~Vi~LISGG 122 (422)
T COG2379 87 GHPV----PDEASLKASRRLLELVSGLTEDDLVIVLISGG 122 (422)
T ss_pred CCCC----CCchhHHHHHHHHHHhcCCCCCcEEEEEEeCC
Confidence 5554 33333344455556554332 3344444433
No 298
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.71 E-value=1.5e+02 Score=32.38 Aligned_cols=29 Identities=28% Similarity=0.184 Sum_probs=18.9
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
+|+|+|.|.|..+ ++.++.+. |..+...+
T Consensus 2 ~v~viG~G~sG~s---~a~~l~~~-G~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIA---AARLLKAQ-GWEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHH---HHHHHHHC-CCEEEEEC
Confidence 6999999999754 34545553 55555444
No 299
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=24.44 E-value=3.6e+02 Score=29.20 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=18.8
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
+|+|+|.|.|.. .++.++.+. |..+...+
T Consensus 1 ~~~~iG~G~~G~---a~a~~l~~~-G~~V~~sD 29 (433)
T TIGR01087 1 KILILGLGKTGR---AVARFLHKK-GAEVTVTD 29 (433)
T ss_pred CEEEEEeCHhHH---HHHHHHHHC-CCEEEEEe
Confidence 489999999964 555556654 44554444
No 300
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=24.06 E-value=1.2e+03 Score=27.44 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=25.3
Q ss_pred CCcEEEEEcCC-C-CCHHHHHHHHHHHHcCCeEEEEEcCC
Q 006659 366 REDTAVFVSQS-G-ETADTLQALEYASENGALCVGITNTV 403 (636)
Q Consensus 366 ~~dlvI~iS~S-G-~t~e~i~al~~ak~~g~~vi~IT~~~ 403 (636)
.-|++|++... . ..+-...-++.++++|+++|.|-...
T Consensus 370 ~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~ 409 (776)
T PRK09129 370 NLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVD 409 (776)
T ss_pred hCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCc
Confidence 45666666433 2 33445566778889999999997653
No 301
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=24.02 E-value=2e+02 Score=28.04 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=40.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHI 417 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~ 417 (636)
+.|++|++-.|+...-...+++.++++|+++|.|-. ..+++.+.+|..|.-
T Consensus 164 ~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~-~~~~~~~~~~~~i~g 214 (224)
T cd01412 164 KADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINP-EPTPLSPIADFAFRG 214 (224)
T ss_pred cCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECC-CCCCCCCcCCEEEEC
Confidence 578999999888888888888889999998887754 466677777776643
No 302
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=23.98 E-value=5.6e+02 Score=31.93 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659 383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG 420 (636)
Q Consensus 383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~ 420 (636)
...+..||++|+++|+|... -++.++.||..|.+..|
T Consensus 264 a~~l~eAr~rGaKvVVVDPr-~t~tA~~AD~WLpIrPG 300 (1235)
T TIGR01580 264 AHFFTEVRYKGTKTVAITPD-YAEIAKLCDLWLAPKQG 300 (1235)
T ss_pred HHHHHHHHHcCCeEEEEcCC-CChhhHhhCEEeCCCCC
Confidence 45677899999999999987 68888999998877553
No 303
>PRK05968 hypothetical protein; Provisional
Probab=23.95 E-value=6e+02 Score=27.14 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCC---HHHHHHHHHHHHcCCeEE
Q 006659 366 REDTAVFVSQSGET---ADTLQALEYASENGALCV 397 (636)
Q Consensus 366 ~~dlvI~iS~SG~t---~e~i~al~~ak~~g~~vi 397 (636)
+..++++-+-+|.+ .++-++.+.|+++|+.+|
T Consensus 147 ~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vi 181 (389)
T PRK05968 147 GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTM 181 (389)
T ss_pred cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEE
Confidence 33566666666655 677788889999998665
No 304
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.92 E-value=9.1e+02 Score=25.83 Aligned_cols=81 Identities=20% Similarity=0.126 Sum_probs=44.0
Q ss_pred CCeEEEEeechhHHHHHHHHHHHHHhc---CCcEEEeeccchhc----------------c-cCCCCCCcEEEEEcCCCC
Q 006659 319 SRRIVFIGCGTSYNAALAARPILEELS---DLPVTMEIASDLVD----------------R-QAPIYREDTAVFVSQSGE 378 (636)
Q Consensus 319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~---~~~~~~~~~~e~~~----------------~-~~~~~~~dlvI~iS~SG~ 378 (636)
.+-|+++++..+...+........++. ++++.......|.- . .....++++.|.-+.+.
T Consensus 88 P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~~- 166 (396)
T cd01979 88 PSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPD- 166 (396)
T ss_pred CCEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCCc-
Confidence 566666666666666655555444432 44444433322210 0 00123456655555553
Q ss_pred CHHHHHHHHHHHHcCCeEEEEEc
Q 006659 379 TADTLQALEYASENGALCVGITN 401 (636)
Q Consensus 379 t~e~i~al~~ak~~g~~vi~IT~ 401 (636)
.++-++-+..++.|..++++..
T Consensus 167 -~d~~el~~lL~~~Gi~v~~~~~ 188 (396)
T cd01979 167 -IVEDQLRRELEQLGIPVVGFLP 188 (396)
T ss_pred -chHHHHHHHHHHcCCeEEEEeC
Confidence 3466777788889999985554
No 305
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=23.66 E-value=2.5e+02 Score=22.55 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCC
Q 006659 318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGET 379 (636)
Q Consensus 318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t 379 (636)
..+++.++|+|... ..+...+.......+.+.+. |++|..+-++.-
T Consensus 22 ~~~~v~i~G~G~~g---~~~a~~l~~~~~~~v~v~~r-------------di~i~~~~~~~~ 67 (86)
T cd05191 22 KGKTVVVLGAGEVG---KGIAKLLADEGGKKVVLCDR-------------DILVTATPAGVP 67 (86)
T ss_pred CCCEEEEECCCHHH---HHHHHHHHHcCCCEEEEEcC-------------CEEEEcCCCCCC
Confidence 46899999999874 44444444443333333322 888877766543
No 306
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=23.04 E-value=1e+02 Score=29.07 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q 006659 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSA 406 (636)
Q Consensus 369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~ 406 (636)
+..+.=.||+|.++++.++..+..|.+++.+.+..++.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R 42 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTR 42 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCC
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCc
Confidence 45566789999999999999999999999999887764
No 307
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.00 E-value=2e+02 Score=31.60 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=21.0
Q ss_pred CCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 319 SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
.++|+|+|.|.|..+ ++.++.+. |..+...+
T Consensus 9 ~~~i~viG~G~~G~~---~a~~l~~~-G~~v~~~D 39 (460)
T PRK01390 9 GKTVAVFGLGGSGLA---TARALVAG-GAEVIAWD 39 (460)
T ss_pred CCEEEEEeecHhHHH---HHHHHHHC-CCEEEEEC
Confidence 468999999999764 34555554 55555554
No 308
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=22.79 E-value=1.1e+03 Score=26.46 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=51.3
Q ss_pred hHHHHHHHcCCCeEEEEee--chhHHHHHHHHHHHHHhcCCcEEEeeccchhc----ccC---C--CCCCcEEEEEcCCC
Q 006659 309 LKDHLKTIRRSRRIVFIGC--GTSYNAALAARPILEELSDLPVTMEIASDLVD----RQA---P--IYREDTAVFVSQSG 377 (636)
Q Consensus 309 l~~~~~~l~~~~~I~i~G~--G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~----~~~---~--~~~~dlvI~iS~SG 377 (636)
++++.+.+++.++|.++|- +.+..++..+..++.++ +..+.+..+..+.. ... . ....+++|.+-.+-
T Consensus 44 ~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~-g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~LiI~vD~G~ 122 (539)
T TIGR00644 44 VERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDL-GVNVDYYIPNRITEGYGLSPEALREAIENGVSLIITVDNGI 122 (539)
T ss_pred HHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHC-CCceEEEeCCCCcccCCCCHHHHHHHHhcCCCEEEEeCCCc
Confidence 4555666788999999986 34444456666777765 45554443432211 000 0 11347877765444
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEcC
Q 006659 378 ETADTLQALEYASENGALCVGITNT 402 (636)
Q Consensus 378 ~t~e~i~al~~ak~~g~~vi~IT~~ 402 (636)
...+- ++.++++|..+|.|=.+
T Consensus 123 ~~~~~---~~~~~~~g~~vIviDHH 144 (539)
T TIGR00644 123 SAHEE---IDYAKELGIDVIVTDHH 144 (539)
T ss_pred ccHHH---HHHHHhcCCCEEEECCC
Confidence 44433 35678888887765443
No 309
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=22.68 E-value=1.5e+02 Score=29.30 Aligned_cols=53 Identities=11% Similarity=-0.033 Sum_probs=38.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccc--cccCeeEEcCC
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIA--RKTHCGVHINA 419 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La--~~ad~~l~~~~ 419 (636)
.+-|++|++-.|+...-.-.+.+.++ +|+++|.|... .++.. ..+|+.|.-.+
T Consensus 174 ~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~-~~~~~~~~~~d~~~~~~~ 228 (235)
T cd01408 174 EEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINRE-PVGHLGKRPFDVALLGDC 228 (235)
T ss_pred hcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCC-CCCCCCCCCcCEEEeCCH
Confidence 45789999998888777667777777 68888876554 45555 67887775443
No 310
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=22.63 E-value=1.7e+02 Score=30.28 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=55.5
Q ss_pred HcCCCeEEEEeec-hhHHHHHHHHHHHHHhcCCcEEEeeccchhccc--------CCCCCCcEEEEEcCCCCCHHHHHHH
Q 006659 316 IRRSRRIVFIGCG-TSYNAALAARPILEELSDLPVTMEIASDLVDRQ--------APIYREDTAVFVSQSGETADTLQAL 386 (636)
Q Consensus 316 l~~~~~I~i~G~G-~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~--------~~~~~~dlvI~iS~SG~t~e~i~al 386 (636)
|.+++.|+-.|.| .|.---..++.+...+++---..-..-+.-+.+ ...-..+|.|++-.||--. -+
T Consensus 192 L~~A~iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~QVGqTGk~V~P~LYIA~GISGAiQ----Hl 267 (313)
T COG2025 192 LAEAKIVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDRQVGQTGKTVAPKLYIALGISGAIQ----HL 267 (313)
T ss_pred cccceEEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccceecCCCcEecccEEEEEecccHHH----HH
Confidence 4578999999987 443223335666666553211111111111111 1122678999999999321 11
Q ss_pred HHHHHcCC-eEEEEEcCCCCccccccCeeEE
Q 006659 387 EYASENGA-LCVGITNTVGSAIARKTHCGVH 416 (636)
Q Consensus 387 ~~ak~~g~-~vi~IT~~~~s~La~~ad~~l~ 416 (636)
+=-+++ .+|+|=..++.|+-+.||+-|.
T Consensus 268 --aGm~~Sk~IVAINkD~nAPIF~~ADyGiV 296 (313)
T COG2025 268 --AGMKDSKVIVAINKDPNAPIFQVADYGIV 296 (313)
T ss_pred --hhcccCcEEEEEcCCCCCCccccCCeeee
Confidence 111233 4679999999999999999874
No 311
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.53 E-value=4.4e+02 Score=28.73 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=22.6
Q ss_pred CCCCc-EEEEEcCC---CCCHHHHHHHHHHHHcCCeEE
Q 006659 364 IYRED-TAVFVSQS---GETADTLQALEYASENGALCV 397 (636)
Q Consensus 364 ~~~~d-lvI~iS~S---G~t~e~i~al~~ak~~g~~vi 397 (636)
++++. ++++.+.+ |...++-++.+.|+++|+.+|
T Consensus 146 i~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vI 183 (431)
T PRK08248 146 ITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLI 183 (431)
T ss_pred cCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEE
Confidence 34443 44444443 677788888999999997665
No 312
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.92 E-value=2.2e+02 Score=24.90 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEE
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGIT 400 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT 400 (636)
..-|++|=+| ....+.+.++.+.++|.++|.=|
T Consensus 66 ~~~DVvIDfT---~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 66 EEADVVIDFT---NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp TH-SEEEEES----HHHHHHHHHHHHHHT-EEEEE-
T ss_pred ccCCEEEEcC---ChHHhHHHHHHHHhCCCCEEEEC
Confidence 3478888888 44566688899999998887644
No 313
>PLN02242 methionine gamma-lyase
Probab=21.72 E-value=4.3e+02 Score=28.65 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=22.9
Q ss_pred EEEEEcC---CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCcc
Q 006659 369 TAVFVSQ---SGETADTLQALEYASENGALCVGITNTVGSAI 407 (636)
Q Consensus 369 lvI~iS~---SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~L 407 (636)
++++.+- +|...++-++.+.|+++|+.+| .++.-+++
T Consensus 166 lV~lesp~NPtG~v~dl~~I~~la~~~gi~li--vDea~~~~ 205 (418)
T PLN02242 166 VLYFESISNPTLTVADIPELARIAHEKGVTVV--VDNTFAPM 205 (418)
T ss_pred EEEEecCCCCCCcccCHHHHHHHHHHhCCEEE--EECCCCcc
Confidence 4554433 4556677788889999886554 44444444
No 314
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=21.72 E-value=4.5e+02 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEEc----CCCCccccccCeeEEc
Q 006659 376 SGETADTLQALEYASENGALCVGITN----TVGSAIARKTHCGVHI 417 (636)
Q Consensus 376 SG~t~e~i~al~~ak~~g~~vi~IT~----~~~s~La~~ad~~l~~ 417 (636)
+|...++-++.+.|+++|+.+|.=.. ....|+..-+|+++.-
T Consensus 147 tg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S 192 (380)
T PRK06176 147 LLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHS 192 (380)
T ss_pred CceecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEec
Confidence 35567788889999999976653111 1123445557765543
No 315
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=21.71 E-value=3.1e+02 Score=30.03 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 319 SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
.++|.++|.|.|. ..+..++.+. |..+.+.+
T Consensus 7 ~~kv~V~GLG~sG---~a~a~~L~~~-G~~v~v~D 37 (448)
T COG0771 7 GKKVLVLGLGKSG---LAAARFLLKL-GAEVTVSD 37 (448)
T ss_pred CCEEEEEeccccc---HHHHHHHHHC-CCeEEEEc
Confidence 6899999999995 6666777774 56666655
No 316
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.66 E-value=1.4e+02 Score=24.13 Aligned_cols=36 Identities=14% Similarity=-0.078 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcC
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNT 402 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~ 402 (636)
....++|++...+. +..++.+..++.|.+..-+|++
T Consensus 39 ~~a~vlvGi~~~~~--~~~~l~~~l~~~g~~~~dls~n 74 (81)
T cd04907 39 DYGRVLVGIQVPDA--DLDELKERLDALGYPYQEETDN 74 (81)
T ss_pred CceeEEEEEEeChH--HHHHHHHHHHHcCCCeEECCCC
Confidence 45668899988865 8889999999999999988875
No 317
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.51 E-value=7.1e+02 Score=26.38 Aligned_cols=38 Identities=8% Similarity=-0.058 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcC
Q 006659 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNT 402 (636)
Q Consensus 365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~ 402 (636)
.++++.|+-.......+.-++-+..++.|++++.+-..
T Consensus 151 ~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~ 188 (399)
T cd00316 151 EPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDG 188 (399)
T ss_pred CCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCC
Confidence 34555555444443347777777888899999988765
No 318
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=21.45 E-value=6.1e+02 Score=28.65 Aligned_cols=27 Identities=26% Similarity=0.126 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHH-HHHHc
Q 006659 366 REDTAVFVSQSGETADTLQALE-YASEN 392 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~-~ak~~ 392 (636)
.+++.+=.|...-+.++++++. .|++.
T Consensus 44 ~~~~~lD~sk~~i~~~~~~~l~~la~~~ 71 (548)
T PRK00179 44 AGGLLLDYSKNRITDETLALLLDLAREA 71 (548)
T ss_pred cCCEEEEccCCCCCHHHHHHHHHHHHhC
Confidence 3557777777777888887665 44443
No 319
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=21.23 E-value=92 Score=28.06 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcC
Q 006659 369 TAVFVSQSGETADTLQALEYASENGALCVGITNT 402 (636)
Q Consensus 369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~ 402 (636)
.+++.+.||.|.-+-.+++.++++|.++.+|-+.
T Consensus 4 ~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 4 QVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 4778899999999999999999999988877554
No 320
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.87 E-value=2.3e+02 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=21.1
Q ss_pred CCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659 319 SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353 (636)
Q Consensus 319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~ 353 (636)
-++|.++|.|.|. ..+..++.+. |..+.+.+
T Consensus 8 ~~~v~v~G~G~sG---~~~~~~l~~~-g~~v~~~d 38 (468)
T PRK04690 8 GRRVALWGWGREG---RAAYRALRAH-LPAQALTL 38 (468)
T ss_pred CCEEEEEccchhh---HHHHHHHHHc-CCEEEEEc
Confidence 4789999999995 5555666664 54444444
No 321
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.77 E-value=2.5e+02 Score=29.50 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=43.3
Q ss_pred CeEEEEeechhHHHHHHHHHHHH-HhcCCcEEEeeccchhcc-cCCCCCCcEEEEEcCCCC-CHH---HHHHHHHHHHcC
Q 006659 320 RRIVFIGCGTSYNAALAARPILE-ELSDLPVTMEIASDLVDR-QAPIYREDTAVFVSQSGE-TAD---TLQALEYASENG 393 (636)
Q Consensus 320 ~~I~i~G~G~S~~aa~~~~~~~~-~~~~~~~~~~~~~e~~~~-~~~~~~~dlvI~iS~SG~-t~e---~i~al~~ak~~g 393 (636)
+++.+++..+|...|...+..+. .++.+...-++..|.... ...+..+|++|+-|.+.. +.. ++-++..+|+.|
T Consensus 8 ~~~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~ 87 (332)
T PRK00553 8 SNHVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGS 87 (332)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcC
Confidence 44555555555444444433332 222334444555554332 234566788888887653 333 445566788888
Q ss_pred CeEE-EEEc
Q 006659 394 ALCV-GITN 401 (636)
Q Consensus 394 ~~vi-~IT~ 401 (636)
++.| +|..
T Consensus 88 a~~i~~ViP 96 (332)
T PRK00553 88 AKSITAILP 96 (332)
T ss_pred CCeEEEEee
Confidence 8644 5544
No 322
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.74 E-value=4.9e+02 Score=27.70 Aligned_cols=83 Identities=16% Similarity=0.084 Sum_probs=41.1
Q ss_pred HHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEc----CCCCCHHHHHHHHH
Q 006659 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVS----QSGETADTLQALEY 388 (636)
Q Consensus 313 ~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS----~SG~t~e~i~al~~ 388 (636)
...++..++|++....-... ...+..+..+ .++.+...+..+.......+++++-+|.+. -+|...++-++.+.
T Consensus 79 l~ll~~Gd~Vl~~~~~y~~~-~~~~~~~~~~-~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~l 156 (378)
T TIGR01329 79 TRLLNNGDEIIAGDDLYGGT-DRLLTQVVPR-SGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEM 156 (378)
T ss_pred HHHhCCCCEEEEcCCCchHH-HHHHHHHHHH-cCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHH
Confidence 33445556666654322110 1112233333 355554444333221122344555444432 34566688888999
Q ss_pred HHHcCCeEE
Q 006659 389 ASENGALCV 397 (636)
Q Consensus 389 ak~~g~~vi 397 (636)
|+++|+.+|
T Consensus 157 a~~~g~~vi 165 (378)
T TIGR01329 157 AHAQNALVV 165 (378)
T ss_pred HHHcCCEEE
Confidence 999997665
No 323
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=20.71 E-value=1.7e+02 Score=31.11 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINA 419 (636)
Q Consensus 381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~ 419 (636)
--..+++.|++.|.++++++.++++|-.+++|..+..+.
T Consensus 10 ~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~ 48 (380)
T TIGR01142 10 LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINM 48 (380)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCC
Confidence 345667789999999999999999999999998776543
No 324
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=20.69 E-value=6.7e+02 Score=23.06 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=53.7
Q ss_pred eEEEEeechhHHHHHHHHHHHHHhcCC-cEEEe--eccc------h--------hcccCCCCCCcEEEEEcCCCCCHHHH
Q 006659 321 RIVFIGCGTSYNAALAARPILEELSDL-PVTME--IASD------L--------VDRQAPIYREDTAVFVSQSGETADTL 383 (636)
Q Consensus 321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~-~~~~~--~~~e------~--------~~~~~~~~~~dlvI~iS~SG~t~e~i 383 (636)
+|+.+|--...+.......+..|+... .+... .... . ......+.+++.+|++.-.|+.-+..
T Consensus 4 ~i~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS~ 83 (155)
T PF02590_consen 4 RIIAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLSSE 83 (155)
T ss_dssp EEEEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--HH
T ss_pred EEEEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCChH
Confidence 356666666666677788888888753 22221 1111 0 01123456899999999999988888
Q ss_pred HHHHHHHH---cCC-eEEEEEcCCCC---ccccccCeeEEc
Q 006659 384 QALEYASE---NGA-LCVGITNTVGS---AIARKTHCGVHI 417 (636)
Q Consensus 384 ~al~~ak~---~g~-~vi~IT~~~~s---~La~~ad~~l~~ 417 (636)
+.++...+ .|. .++-+.+-+.. .+.+.||..|-+
T Consensus 84 ~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSL 124 (155)
T PF02590_consen 84 EFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSL 124 (155)
T ss_dssp HHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES
T ss_pred HHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEE
Confidence 87777666 554 44444443222 244567877755
No 325
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=20.61 E-value=3.9e+02 Score=27.96 Aligned_cols=85 Identities=11% Similarity=-0.063 Sum_probs=47.4
Q ss_pred cCCCeEEEEeechhHHHHHHHHHHH--HHhcCCcEEEeeccchhcc---cCCCCCCcEEEEEcCCCCCHHHHHH---HHH
Q 006659 317 RRSRRIVFIGCGTSYNAALAARPIL--EELSDLPVTMEIASDLVDR---QAPIYREDTAVFVSQSGETADTLQA---LEY 388 (636)
Q Consensus 317 ~~~~~I~i~G~G~S~~aa~~~~~~~--~~~~~~~~~~~~~~e~~~~---~~~~~~~dlvI~iS~SG~t~e~i~a---l~~ 388 (636)
+..+++.+++..+|...|..++..+ -.++.+...-++..|.... ...+...|++|+-|.+.. .+++++ +..
T Consensus 12 ~~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dA 90 (326)
T PLN02297 12 KNKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYA 90 (326)
T ss_pred ccCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHH
Confidence 3456677777777755555444432 2333444445555543222 234556788888886654 555554 456
Q ss_pred HHHcCCe-EEEEEcC
Q 006659 389 ASENGAL-CVGITNT 402 (636)
Q Consensus 389 ak~~g~~-vi~IT~~ 402 (636)
+|+.|++ +.+|..+
T Consensus 91 lr~~ga~~i~~ViPY 105 (326)
T PLN02297 91 LPKLFVASFTLVLPF 105 (326)
T ss_pred HHHcCCCEEEEEeeC
Confidence 7788885 4455553
No 326
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=20.59 E-value=1.7e+02 Score=28.87 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSA 406 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~ 406 (636)
..|++|++|-.+..+-.-.+=+..++.|.++|.||+.+...
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k 99 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK 99 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh
Confidence 46899999999999999999999999999999999976555
No 327
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=20.50 E-value=1.3e+02 Score=30.82 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=29.9
Q ss_pred EEEEEcCCCC---CHHHHHHHHHHHHcC-CeEEEEEcCCC
Q 006659 369 TAVFVSQSGE---TADTLQALEYASENG-ALCVGITNTVG 404 (636)
Q Consensus 369 lvI~iS~SG~---t~e~i~al~~ak~~g-~~vi~IT~~~~ 404 (636)
-.++||.+|+ .+.+-+.++.+|++| .++..|||..-
T Consensus 81 d~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 81 DHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred CEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 4688899998 567778999999999 79999998644
No 328
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=20.30 E-value=1.9e+02 Score=28.67 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q 006659 366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVH 416 (636)
Q Consensus 366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~ 416 (636)
+.|++|++-.|....-....++.++++|+++|.|-.. .+++...+|..|.
T Consensus 177 ~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~-~~~~~~~~~~~i~ 226 (242)
T PRK00481 177 EADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLE-PTPLDSLFDLVIH 226 (242)
T ss_pred cCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCC-CCCCCCccCEEEE
Confidence 4589999998888877788888889999998777544 5667766776554
No 329
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.03 E-value=5.2e+02 Score=30.09 Aligned_cols=18 Identities=0% Similarity=0.006 Sum_probs=13.8
Q ss_pred CeEEEEEcCCCCccccccC
Q 006659 394 ALCVGITNTVGSAIARKTH 412 (636)
Q Consensus 394 ~~vi~IT~~~~s~La~~ad 412 (636)
+++|.|-.. .++.++.||
T Consensus 271 ~klIVVDPR-~T~TA~~Ad 288 (676)
T cd02756 271 GRIIVVDPR-RTETVHAAE 288 (676)
T ss_pred CEEEEEeCC-CcchhHhhh
Confidence 578887765 777788887
Done!