Query 006661
Match_columns 636
No_of_seqs 393 out of 2212
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 12:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.8 3E-20 6.5E-25 188.1 16.3 118 34-154 1-120 (229)
2 COG4753 Response regulator con 99.8 3.8E-20 8.3E-25 202.9 13.8 119 33-153 1-123 (475)
3 COG4566 TtrR Response regulato 99.8 9.7E-20 2.1E-24 177.9 13.0 170 31-203 2-172 (202)
4 COG2197 CitB Response regulato 99.8 4.1E-19 8.8E-24 177.4 15.6 170 34-205 1-180 (211)
5 COG4565 CitB Response regulato 99.8 2.6E-18 5.6E-23 170.7 19.4 119 34-154 1-122 (224)
6 PLN03162 golden-2 like transcr 99.8 6.9E-19 1.5E-23 184.0 9.6 65 217-281 232-296 (526)
7 COG2204 AtoC Response regulato 99.8 8.1E-18 1.8E-22 184.8 16.9 119 33-153 4-123 (464)
8 PF00072 Response_reg: Respons 99.7 3.9E-17 8.4E-22 142.4 15.6 110 36-147 1-112 (112)
9 PRK10046 dpiA two-component re 99.7 2.2E-16 4.8E-21 156.9 22.6 122 30-153 1-125 (225)
10 COG3437 Response regulator con 99.7 1.9E-17 4.1E-22 175.0 14.7 233 30-328 11-249 (360)
11 PRK10840 transcriptional regul 99.7 3.3E-16 7.2E-21 153.8 15.5 170 33-204 3-181 (216)
12 PRK11466 hybrid sensory histid 99.7 5.6E-16 1.2E-20 181.8 18.6 151 1-152 630-800 (914)
13 COG0784 CheY FOG: CheY-like re 99.7 1.8E-15 3.9E-20 135.0 17.1 120 31-151 3-125 (130)
14 PRK15347 two component system 99.7 9.5E-16 2.1E-20 179.5 19.0 117 33-151 690-811 (921)
15 TIGR02956 TMAO_torS TMAO reduc 99.7 7.8E-16 1.7E-20 181.3 18.4 150 1-152 651-823 (968)
16 PRK11091 aerobic respiration c 99.7 9.4E-16 2E-20 177.7 18.0 149 1-152 473-645 (779)
17 PRK09483 response regulator; P 99.7 1.9E-15 4.2E-20 145.6 16.9 169 33-203 1-178 (217)
18 PRK10841 hybrid sensory kinase 99.7 2.6E-15 5.7E-20 178.5 19.9 120 32-153 800-920 (924)
19 PLN03029 type-a response regul 99.7 3.2E-15 7E-20 150.0 17.0 122 32-153 7-149 (222)
20 PRK10529 DNA-binding transcrip 99.6 5.2E-15 1.1E-19 143.7 17.5 118 34-153 2-119 (225)
21 PRK09959 hybrid sensory histid 99.6 2.7E-15 5.8E-20 181.3 18.5 149 1-151 904-1075(1197)
22 PRK10643 DNA-binding transcrip 99.6 1.1E-14 2.3E-19 140.0 18.8 118 34-153 1-119 (222)
23 PRK11107 hybrid sensory histid 99.6 3.9E-15 8.5E-20 174.0 18.4 118 33-152 667-787 (919)
24 PRK11173 two-component respons 99.6 7.7E-15 1.7E-19 144.7 17.4 119 33-153 3-121 (237)
25 PRK10430 DNA-binding transcrip 99.6 1.8E-14 3.8E-19 144.4 20.0 118 34-151 2-122 (239)
26 PRK10336 DNA-binding transcrip 99.6 1.2E-14 2.5E-19 139.7 17.7 118 34-153 1-119 (219)
27 PRK09958 DNA-binding transcrip 99.6 9.6E-15 2.1E-19 139.4 16.8 161 34-196 1-166 (204)
28 PRK10816 DNA-binding transcrip 99.6 1.1E-14 2.4E-19 141.5 17.3 117 34-152 1-118 (223)
29 PRK10360 DNA-binding transcrip 99.6 3.3E-15 7.1E-20 141.7 13.1 158 34-197 2-161 (196)
30 PRK10766 DNA-binding transcrip 99.6 1.6E-14 3.4E-19 139.9 17.3 119 33-153 2-120 (221)
31 PRK09836 DNA-binding transcrip 99.6 1.8E-14 4E-19 140.3 17.3 117 34-152 1-118 (227)
32 COG3706 PleD Response regulato 99.6 1E-14 2.2E-19 159.5 16.8 122 32-155 131-255 (435)
33 PRK10701 DNA-binding transcrip 99.6 2.8E-14 6.1E-19 140.7 17.3 118 34-153 2-119 (240)
34 PRK11517 transcriptional regul 99.6 3.1E-14 6.7E-19 137.5 17.1 117 34-152 1-117 (223)
35 TIGR02154 PhoB phosphate regul 99.6 3.4E-14 7.3E-19 136.6 17.2 118 33-152 2-122 (226)
36 PRK10955 DNA-binding transcrip 99.6 3.3E-14 7.2E-19 138.1 17.0 117 34-153 2-118 (232)
37 CHL00148 orf27 Ycf27; Reviewed 99.6 4.4E-14 9.6E-19 137.9 17.6 120 32-153 5-124 (240)
38 PRK10161 transcriptional regul 99.6 4.4E-14 9.5E-19 137.8 17.4 117 34-152 3-122 (229)
39 COG3947 Response regulator con 99.6 4E-15 8.6E-20 153.7 10.4 114 34-151 1-115 (361)
40 PRK13856 two-component respons 99.6 4.6E-14 1E-18 140.0 17.1 117 35-153 3-120 (241)
41 PRK09468 ompR osmolarity respo 99.6 7.2E-14 1.6E-18 137.4 17.2 118 33-152 5-123 (239)
42 PRK11475 DNA-binding transcrip 99.6 1.2E-14 2.6E-19 145.3 11.4 155 46-204 3-165 (207)
43 PRK09935 transcriptional regul 99.6 1.1E-13 2.3E-18 131.9 17.5 165 33-199 3-175 (210)
44 TIGR03787 marine_sort_RR prote 99.6 9.5E-14 2.1E-18 135.0 17.5 117 35-153 2-121 (227)
45 PRK11083 DNA-binding response 99.6 7.7E-14 1.7E-18 134.6 16.6 119 33-153 3-122 (228)
46 TIGR01557 myb_SHAQKYF myb-like 99.6 5.1E-15 1.1E-19 119.8 6.4 54 220-273 1-55 (57)
47 KOG0519 Sensory transduction h 99.6 2.2E-14 4.8E-19 167.9 14.0 122 28-150 661-784 (786)
48 TIGR01387 cztR_silR_copR heavy 99.6 1.9E-13 4.1E-18 131.0 17.9 116 36-153 1-117 (218)
49 PRK11697 putative two-componen 99.6 9.2E-14 2E-18 137.4 16.3 116 33-152 1-118 (238)
50 PRK15411 rcsA colanic acid cap 99.5 1E-13 2.2E-18 138.0 15.0 162 34-205 1-169 (207)
51 PRK14084 two-component respons 99.5 2.3E-13 4.9E-18 135.7 16.6 115 34-152 1-118 (246)
52 PRK10100 DNA-binding transcrip 99.5 6.3E-14 1.4E-18 140.8 12.5 167 33-205 10-187 (216)
53 PRK09581 pleD response regulat 99.5 6.2E-14 1.3E-18 149.6 13.1 119 31-152 153-274 (457)
54 PRK15479 transcriptional regul 99.5 8.9E-13 1.9E-17 126.6 18.9 118 34-153 1-119 (221)
55 TIGR02875 spore_0_A sporulatio 99.5 3.5E-13 7.6E-18 136.2 16.5 118 33-152 2-124 (262)
56 COG4567 Response regulator con 99.5 1.7E-13 3.7E-18 130.3 12.7 112 35-148 11-123 (182)
57 PRK15369 two component system 99.5 7.7E-13 1.7E-17 124.3 16.9 168 32-201 2-177 (211)
58 PRK09390 fixJ response regulat 99.5 2.4E-13 5.3E-18 127.2 13.0 120 31-152 1-121 (202)
59 PRK10365 transcriptional regul 99.5 3.1E-13 6.7E-18 146.6 15.5 119 32-152 4-123 (441)
60 PRK13837 two-component VirA-li 99.5 5.4E-13 1.2E-17 156.8 18.4 149 1-152 643-814 (828)
61 PRK10403 transcriptional regul 99.5 6.1E-13 1.3E-17 126.3 15.4 163 33-197 6-177 (215)
62 PRK10651 transcriptional regul 99.5 1E-12 2.3E-17 125.1 16.9 168 32-201 5-183 (216)
63 PRK10710 DNA-binding transcrip 99.5 1.5E-12 3.3E-17 127.1 17.6 117 34-152 11-127 (240)
64 PRK11361 acetoacetate metaboli 99.5 6.8E-13 1.5E-17 144.8 16.6 120 30-151 1-121 (457)
65 PRK15115 response regulator Gl 99.5 8.2E-13 1.8E-17 144.0 15.9 118 33-152 5-123 (444)
66 PRK10923 glnG nitrogen regulat 99.5 1.4E-12 2.9E-17 143.4 17.2 117 34-152 4-121 (469)
67 PRK12555 chemotaxis-specific m 99.4 1.3E-12 2.7E-17 138.4 15.8 102 34-137 1-106 (337)
68 TIGR02915 PEP_resp_reg putativ 99.4 1.7E-12 3.7E-17 141.5 15.9 112 36-151 1-118 (445)
69 PRK10610 chemotaxis regulatory 99.4 1.3E-11 2.9E-16 105.2 17.0 118 33-152 5-126 (129)
70 PRK13435 response regulator; P 99.4 4.8E-12 1E-16 116.1 15.2 116 33-153 5-122 (145)
71 TIGR01818 ntrC nitrogen regula 99.4 3.6E-12 7.8E-17 139.6 16.0 115 36-152 1-116 (463)
72 PRK13557 histidine kinase; Pro 99.4 7.1E-12 1.5E-16 136.7 17.5 150 1-151 362-534 (540)
73 PRK09581 pleD response regulat 99.4 9.8E-12 2.1E-16 132.8 17.8 117 34-152 3-122 (457)
74 PRK00742 chemotaxis-specific m 99.4 8.5E-12 1.8E-16 132.8 16.1 104 33-138 3-110 (354)
75 COG2201 CheB Chemotaxis respon 99.3 6.4E-12 1.4E-16 134.2 13.1 104 33-138 1-108 (350)
76 PRK13558 bacterio-opsin activa 99.3 1E-11 2.2E-16 141.8 15.0 118 33-152 7-127 (665)
77 PRK09191 two-component respons 99.3 1.2E-10 2.6E-15 116.8 15.9 115 33-151 137-253 (261)
78 COG3707 AmiR Response regulato 99.2 9.2E-11 2E-15 115.7 12.3 119 32-152 4-123 (194)
79 cd00156 REC Signal receiver do 99.2 4.4E-10 9.5E-15 90.9 13.1 111 37-149 1-112 (113)
80 PRK10693 response regulator of 99.1 8.6E-10 1.9E-14 115.8 12.4 89 62-152 2-92 (303)
81 COG3279 LytT Response regulato 99.0 1.1E-09 2.4E-14 112.2 11.2 116 33-152 1-119 (244)
82 PRK15029 arginine decarboxylas 98.9 1.2E-08 2.7E-13 119.1 14.0 115 34-150 1-131 (755)
83 PRK11107 hybrid sensory histid 98.1 2.3E-05 5E-10 92.5 14.1 144 1-150 486-650 (919)
84 COG3706 PleD Response regulato 98.1 4E-06 8.8E-11 92.6 5.3 94 57-153 12-105 (435)
85 PRK10618 phosphotransfer inter 98.0 1E-05 2.3E-10 96.9 6.9 81 1-89 640-737 (894)
86 smart00448 REC cheY-homologous 97.4 0.0011 2.3E-08 46.5 8.2 55 34-90 1-55 (55)
87 PF06490 FleQ: Flagellar regul 97.2 0.0024 5.2E-08 58.1 9.9 105 35-149 1-107 (109)
88 cd02071 MM_CoA_mut_B12_BD meth 95.8 0.22 4.8E-06 45.9 13.0 110 35-146 1-120 (122)
89 PRK02261 methylaspartate mutas 95.7 0.38 8.2E-06 45.7 14.2 115 33-150 3-134 (137)
90 cd02067 B12-binding B12 bindin 95.2 0.22 4.7E-06 45.2 10.7 94 40-135 10-109 (119)
91 PF03709 OKR_DC_1_N: Orn/Lys/A 95.1 0.19 4.2E-06 46.0 9.9 105 45-151 5-113 (115)
92 TIGR00640 acid_CoA_mut_C methy 94.8 1.2 2.5E-05 42.2 14.6 116 34-151 3-128 (132)
93 PF00249 Myb_DNA-binding: Myb- 92.0 0.43 9.2E-06 36.9 5.5 47 223-272 2-48 (48)
94 PRK15399 lysine decarboxylase 90.6 2.6 5.6E-05 50.2 12.6 114 34-151 1-122 (713)
95 cd04728 ThiG Thiazole synthase 90.6 1.4 3E-05 46.1 9.2 112 32-151 92-225 (248)
96 PF02310 B12-binding: B12 bind 90.3 4.6 0.0001 36.1 11.3 92 40-134 11-110 (121)
97 PRK00208 thiG thiazole synthas 90.1 2.8 6.1E-05 43.9 10.9 111 32-151 92-225 (250)
98 TIGR03815 CpaE_hom_Actino heli 89.6 0.97 2.1E-05 48.1 7.4 84 58-150 2-86 (322)
99 PRK15320 transcriptional activ 89.6 0.86 1.9E-05 46.4 6.5 163 35-204 3-195 (251)
100 PRK15400 lysine decarboxylase 89.5 3.1 6.6E-05 49.7 11.9 113 34-150 1-121 (714)
101 TIGR01501 MthylAspMutase methy 89.0 9.9 0.00021 36.3 12.9 109 40-150 12-132 (134)
102 PRK01130 N-acetylmannosamine-6 86.4 12 0.00026 37.7 12.6 85 48-135 109-202 (221)
103 cd02070 corrinoid_protein_B12- 85.6 8.7 0.00019 38.4 11.0 98 33-135 82-191 (201)
104 cd02069 methionine_synthase_B1 83.8 13 0.00027 38.0 11.3 103 32-136 87-202 (213)
105 PF10087 DUF2325: Uncharacteri 83.5 8.4 0.00018 34.0 8.8 90 35-125 1-93 (97)
106 PF01408 GFO_IDH_MocA: Oxidore 83.2 30 0.00064 30.7 12.4 105 34-151 1-111 (120)
107 PRK00043 thiE thiamine-phospha 82.9 17 0.00038 35.7 11.8 69 62-134 110-187 (212)
108 cd04729 NanE N-acetylmannosami 81.9 18 0.00038 36.5 11.5 72 61-135 128-206 (219)
109 cd02072 Glm_B12_BD B12 binding 81.7 30 0.00065 32.9 12.2 105 40-147 10-127 (128)
110 COG2185 Sbm Methylmalonyl-CoA 81.2 39 0.00084 32.8 12.8 117 32-150 11-137 (143)
111 CHL00162 thiG thiamin biosynth 79.3 32 0.0007 36.5 12.5 115 32-151 106-239 (267)
112 cd02068 radical_SAM_B12_BD B12 78.1 21 0.00045 32.6 9.8 105 44-150 3-111 (127)
113 PRK07896 nicotinate-nucleotide 75.2 26 0.00057 37.6 10.9 94 36-133 173-272 (289)
114 PRK08385 nicotinate-nucleotide 74.9 52 0.0011 35.2 12.9 94 36-134 157-258 (278)
115 TIGR01334 modD putative molybd 74.7 23 0.00049 37.8 10.1 93 36-132 159-260 (277)
116 COG4999 Uncharacterized domain 74.3 16 0.00034 34.7 7.7 106 32-145 10-120 (140)
117 TIGR02370 pyl_corrinoid methyl 73.9 22 0.00047 35.6 9.4 97 34-135 85-193 (197)
118 PRK12724 flagellar biosynthesi 73.4 18 0.00039 40.9 9.5 122 12-135 230-368 (432)
119 PRK03958 tRNA 2'-O-methylase; 73.3 35 0.00077 34.2 10.4 94 35-136 33-129 (176)
120 PRK10558 alpha-dehydro-beta-de 72.3 36 0.00077 35.7 10.9 100 48-149 9-113 (256)
121 PRK10128 2-keto-3-deoxy-L-rham 71.6 42 0.00091 35.6 11.2 100 48-149 8-112 (267)
122 cd04724 Tryptophan_synthase_al 71.4 17 0.00036 37.6 8.1 57 94-150 64-126 (242)
123 TIGR03239 GarL 2-dehydro-3-deo 71.3 45 0.00097 34.9 11.3 99 49-149 3-106 (249)
124 cd04730 NPD_like 2-Nitropropan 71.1 57 0.0012 32.7 11.8 71 62-135 108-185 (236)
125 TIGR00007 phosphoribosylformim 70.5 51 0.0011 33.2 11.3 68 65-134 146-217 (230)
126 PRK09426 methylmalonyl-CoA mut 69.7 56 0.0012 39.4 12.9 116 34-151 583-708 (714)
127 COG0512 PabA Anthranilate/para 69.3 7.3 0.00016 39.4 4.7 77 33-113 1-81 (191)
128 PRK05848 nicotinate-nucleotide 68.9 36 0.00079 36.2 10.1 91 36-134 155-256 (273)
129 PF01596 Methyltransf_3: O-met 68.8 25 0.00055 35.6 8.6 61 28-88 65-130 (205)
130 TIGR03151 enACPred_II putative 68.6 43 0.00093 36.0 10.7 83 50-135 102-190 (307)
131 cd03114 ArgK-like The function 68.0 5.1 0.00011 38.2 3.2 99 11-115 5-123 (148)
132 PF09936 Methyltrn_RNA_4: SAM- 67.5 49 0.0011 33.4 10.0 102 35-139 44-162 (185)
133 PLN02591 tryptophan synthase 66.9 19 0.00042 37.7 7.5 58 93-150 65-128 (250)
134 PRK11840 bifunctional sulfur c 66.6 69 0.0015 35.1 11.7 114 33-151 167-299 (326)
135 PRK13111 trpA tryptophan synth 65.7 21 0.00045 37.6 7.5 56 94-149 76-138 (258)
136 TIGR02311 HpaI 2,4-dihydroxyhe 65.1 72 0.0016 33.2 11.3 99 49-149 3-106 (249)
137 PRK00278 trpC indole-3-glycero 64.6 1.3E+02 0.0027 31.6 13.1 90 42-135 145-240 (260)
138 PF03602 Cons_hypoth95: Conser 64.3 27 0.00059 34.7 7.7 67 34-102 66-138 (183)
139 TIGR00262 trpA tryptophan synt 64.3 25 0.00054 36.8 7.7 57 93-149 73-136 (256)
140 PRK06096 molybdenum transport 62.5 47 0.001 35.6 9.5 95 36-134 160-263 (284)
141 PRK13587 1-(5-phosphoribosyl)- 62.1 34 0.00073 35.3 8.2 68 67-135 151-221 (234)
142 cd00564 TMP_TenI Thiamine mono 62.0 57 0.0012 31.2 9.3 70 62-135 101-178 (196)
143 cd00331 IGPS Indole-3-glycerol 61.8 1.6E+02 0.0035 29.4 12.8 78 55-135 119-201 (217)
144 cd04727 pdxS PdxS is a subunit 61.5 52 0.0011 35.4 9.5 88 61-151 117-246 (283)
145 smart00426 TEA TEA domain. 61.5 6.2 0.00014 33.6 2.2 47 224-270 5-67 (68)
146 PRK11889 flhF flagellar biosyn 60.6 38 0.00082 38.4 8.7 74 14-87 250-328 (436)
147 TIGR00343 pyridoxal 5'-phospha 60.2 55 0.0012 35.2 9.4 60 93-152 184-250 (287)
148 PRK12704 phosphodiesterase; Pr 59.6 11 0.00024 43.5 4.5 45 108-152 251-297 (520)
149 CHL00200 trpA tryptophan synth 59.4 30 0.00066 36.5 7.4 57 93-149 78-140 (263)
150 TIGR02026 BchE magnesium-proto 58.8 1E+02 0.0023 35.1 12.1 108 42-152 21-138 (497)
151 PTZ00314 inosine-5'-monophosph 57.5 84 0.0018 36.2 11.0 101 32-135 252-373 (495)
152 PRK06731 flhF flagellar biosyn 57.4 40 0.00087 35.7 7.9 74 14-87 84-162 (270)
153 PRK05458 guanosine 5'-monophos 57.4 1.6E+02 0.0034 32.3 12.5 98 35-135 113-230 (326)
154 cd01424 MGS_CPS_II Methylglyox 57.3 82 0.0018 28.1 8.9 26 38-63 7-32 (110)
155 PLN02274 inosine-5'-monophosph 57.3 1.3E+02 0.0027 34.9 12.4 101 32-135 259-380 (505)
156 PRK05718 keto-hydroxyglutarate 57.2 1.2E+02 0.0026 31.1 11.0 90 51-144 10-102 (212)
157 cd04726 KGPDC_HPS 3-Keto-L-gul 56.7 1.8E+02 0.0039 28.4 12.0 100 32-135 76-186 (202)
158 TIGR01761 thiaz-red thiazoliny 56.6 1.1E+02 0.0024 33.6 11.3 105 32-151 2-113 (343)
159 cd02065 B12-binding_like B12 b 56.5 69 0.0015 28.5 8.3 71 40-112 10-86 (125)
160 PRK07428 nicotinate-nucleotide 56.4 84 0.0018 33.7 10.2 95 35-134 168-270 (288)
161 PRK00748 1-(5-phosphoribosyl)- 55.8 56 0.0012 32.8 8.4 67 66-134 148-219 (233)
162 PF02254 TrkA_N: TrkA-N domain 55.3 1.3E+02 0.0029 26.4 9.9 91 34-133 22-114 (116)
163 PF07688 KaiA: KaiA domain; I 55.1 47 0.001 35.3 7.7 112 35-152 2-119 (283)
164 cd03313 enolase Enolase: Enola 54.7 96 0.0021 34.7 10.7 104 40-146 210-346 (408)
165 cd04723 HisA_HisF Phosphoribos 54.6 65 0.0014 33.0 8.7 68 65-134 147-217 (233)
166 TIGR01037 pyrD_sub1_fam dihydr 54.4 1.7E+02 0.0036 30.9 12.0 58 95-152 223-286 (300)
167 cd03823 GT1_ExpE7_like This fa 54.4 2.1E+02 0.0045 28.9 12.3 66 80-151 263-328 (359)
168 PRK06843 inosine 5-monophospha 53.7 1.2E+02 0.0027 34.1 11.3 101 32-135 164-285 (404)
169 PF01729 QRPTase_C: Quinolinat 53.4 42 0.00092 33.1 6.9 95 36-134 53-154 (169)
170 PRK07259 dihydroorotate dehydr 53.4 1.5E+02 0.0031 31.4 11.4 57 95-151 223-285 (301)
171 PRK05567 inosine 5'-monophosph 53.2 1.1E+02 0.0024 35.0 11.1 100 32-135 239-360 (486)
172 PRK07649 para-aminobenzoate/an 52.5 16 0.00035 36.5 3.9 48 36-85 2-49 (195)
173 PRK12726 flagellar biosynthesi 52.4 68 0.0015 36.1 8.9 91 32-124 233-335 (407)
174 COG0157 NadC Nicotinate-nucleo 52.4 1.9E+02 0.0041 31.2 11.8 92 36-132 161-259 (280)
175 PRK14974 cell division protein 52.2 76 0.0016 34.8 9.2 98 32-133 167-285 (336)
176 cd06533 Glyco_transf_WecG_TagA 52.0 64 0.0014 31.5 7.9 104 5-112 15-130 (171)
177 PRK05749 3-deoxy-D-manno-octul 51.6 1.5E+02 0.0032 32.4 11.5 54 94-151 334-387 (425)
178 PF05690 ThiG: Thiazole biosyn 51.2 1.2E+02 0.0026 32.0 9.9 116 32-151 92-225 (247)
179 cd04732 HisA HisA. Phosphorib 50.9 1.8E+02 0.004 29.1 11.2 69 65-134 147-218 (234)
180 TIGR00262 trpA tryptophan synt 50.3 2.2E+02 0.0049 29.8 12.0 104 33-136 115-228 (256)
181 cd04722 TIM_phosphate_binding 50.3 1.1E+02 0.0024 28.6 9.0 55 80-134 137-198 (200)
182 PRK09016 quinolinate phosphori 50.3 1.6E+02 0.0035 31.9 11.0 91 36-133 182-278 (296)
183 PLN02871 UDP-sulfoquinovose:DA 49.8 1.7E+02 0.0038 32.5 11.8 107 33-151 290-399 (465)
184 PRK05703 flhF flagellar biosyn 49.6 1.4E+02 0.003 33.7 11.0 92 32-124 250-350 (424)
185 TIGR00735 hisF imidazoleglycer 49.0 1.7E+02 0.0038 30.2 10.9 79 67-147 158-247 (254)
186 PF03060 NMO: Nitronate monoox 48.8 1.3E+02 0.0027 32.6 10.2 82 51-135 130-219 (330)
187 PRK06978 nicotinate-nucleotide 48.1 2.8E+02 0.0061 30.0 12.5 91 35-132 178-274 (294)
188 PRK10669 putative cation:proto 47.6 1.5E+02 0.0033 34.2 11.2 92 33-133 440-533 (558)
189 cd00381 IMPDH IMPDH: The catal 47.6 2E+02 0.0043 31.2 11.5 99 32-134 105-225 (325)
190 PRK13566 anthranilate synthase 47.3 42 0.00092 40.4 6.8 81 29-113 522-605 (720)
191 PRK06774 para-aminobenzoate sy 47.0 24 0.00052 34.8 4.1 73 36-112 2-78 (191)
192 cd03813 GT1_like_3 This family 46.0 1.8E+02 0.0038 32.7 11.2 65 80-151 371-441 (475)
193 PF14097 SpoVAE: Stage V sporu 45.6 2E+02 0.0043 29.0 10.0 80 36-115 3-94 (180)
194 KOG1601 GATA-4/5/6 transcripti 45.5 2.7 5.8E-05 41.9 -3.0 112 37-150 19-137 (340)
195 TIGR03088 stp2 sugar transfera 45.2 1.7E+02 0.0036 31.0 10.3 65 80-151 273-337 (374)
196 PF00534 Glycos_transf_1: Glyc 45.0 2.1E+02 0.0046 26.4 10.0 110 32-153 46-159 (172)
197 TIGR00064 ftsY signal recognit 44.6 1E+02 0.0023 32.4 8.6 55 31-87 98-162 (272)
198 PF04131 NanE: Putative N-acet 44.4 2E+02 0.0043 29.4 10.0 100 32-135 63-173 (192)
199 PRK02083 imidazole glycerol ph 44.3 2.3E+02 0.0049 29.2 10.9 79 67-147 156-245 (253)
200 PRK09140 2-dehydro-3-deoxy-6-p 43.8 1.6E+02 0.0035 29.8 9.5 92 52-145 6-99 (206)
201 PRK06106 nicotinate-nucleotide 43.2 2.5E+02 0.0054 30.2 11.1 90 36-132 167-263 (281)
202 PRK15484 lipopolysaccharide 1, 43.1 4.6E+02 0.01 28.3 13.8 94 48-151 247-343 (380)
203 PRK06559 nicotinate-nucleotide 43.0 3.7E+02 0.008 29.1 12.4 90 35-131 169-265 (290)
204 PLN02716 nicotinate-nucleotide 42.7 3.1E+02 0.0067 29.9 11.8 96 36-131 173-286 (308)
205 TIGR00693 thiE thiamine-phosph 42.5 1.5E+02 0.0032 28.9 8.9 70 61-134 101-179 (196)
206 PF03808 Glyco_tran_WecB: Glyc 42.5 1.4E+02 0.003 29.2 8.5 102 6-111 18-131 (172)
207 PF04321 RmlD_sub_bind: RmlD s 42.4 76 0.0016 33.3 7.1 80 34-115 1-102 (286)
208 PRK07028 bifunctional hexulose 42.1 3.9E+02 0.0084 29.9 13.0 102 48-152 98-212 (430)
209 cd08179 NADPH_BDH NADPH-depend 42.1 1.9E+02 0.0042 31.6 10.5 63 34-101 24-100 (375)
210 KOG4175 Tryptophan synthase al 41.9 82 0.0018 32.6 6.8 43 105-147 94-142 (268)
211 PRK13125 trpA tryptophan synth 41.7 2.1E+02 0.0046 29.5 10.2 54 96-149 64-125 (244)
212 PRK04302 triosephosphate isome 41.4 3.9E+02 0.0085 27.0 12.2 53 96-148 162-217 (223)
213 PRK10742 putative methyltransf 41.4 2.1E+02 0.0046 30.3 10.1 59 32-93 109-178 (250)
214 PLN02781 Probable caffeoyl-CoA 41.3 1.3E+02 0.0028 30.8 8.5 59 30-88 90-153 (234)
215 cd03819 GT1_WavL_like This fam 40.7 3.6E+02 0.0079 27.6 11.8 108 33-150 216-328 (355)
216 PRK06543 nicotinate-nucleotide 40.6 5E+02 0.011 28.0 14.1 91 35-132 161-262 (281)
217 TIGR00734 hisAF_rel hisA/hisF 40.6 1.5E+02 0.0033 30.2 8.9 68 65-134 142-212 (221)
218 PRK01911 ppnK inorganic polyph 40.6 1.9E+02 0.0042 31.0 9.9 103 34-155 1-123 (292)
219 cd04962 GT1_like_5 This family 40.3 2.4E+02 0.0051 29.4 10.4 65 80-151 271-335 (371)
220 TIGR00308 TRM1 tRNA(guanine-26 40.0 5.7E+02 0.012 28.5 13.9 111 34-152 70-190 (374)
221 cd08187 BDH Butanol dehydrogen 39.9 2E+02 0.0044 31.5 10.3 64 33-101 28-105 (382)
222 PRK07695 transcriptional regul 39.8 2.6E+02 0.0057 27.6 10.2 67 62-132 101-174 (201)
223 TIGR03499 FlhF flagellar biosy 39.7 33 0.00072 36.2 4.0 54 33-87 224-280 (282)
224 COG4122 Predicted O-methyltran 39.6 99 0.0022 32.0 7.3 61 28-89 79-142 (219)
225 PRK13125 trpA tryptophan synth 39.4 3.3E+02 0.0071 28.1 11.1 89 45-136 117-215 (244)
226 TIGR00566 trpG_papA glutamine 39.4 40 0.00087 33.3 4.3 74 36-113 2-79 (188)
227 PRK05581 ribulose-phosphate 3- 39.3 1.8E+02 0.004 28.7 9.1 56 80-135 132-198 (220)
228 TIGR01163 rpe ribulose-phospha 39.2 2.7E+02 0.0059 27.2 10.2 54 93-146 43-97 (210)
229 TIGR01859 fruc_bis_ald_ fructo 39.2 2.3E+02 0.005 30.2 10.2 85 63-154 152-245 (282)
230 cd00331 IGPS Indole-3-glycerol 39.1 1.4E+02 0.003 29.9 8.1 67 83-149 49-117 (217)
231 PRK10416 signal recognition pa 38.9 1.3E+02 0.0027 32.7 8.3 55 31-87 140-204 (318)
232 cd04731 HisF The cyclase subun 38.8 1.6E+02 0.0035 30.0 8.7 71 63-135 26-100 (243)
233 TIGR01305 GMP_reduct_1 guanosi 38.5 1.4E+02 0.003 33.1 8.4 67 69-135 111-178 (343)
234 TIGR01163 rpe ribulose-phospha 38.4 96 0.0021 30.4 6.8 67 65-135 115-193 (210)
235 PRK04128 1-(5-phosphoribosyl)- 38.4 2.9E+02 0.0063 28.4 10.5 70 64-135 30-102 (228)
236 cd00429 RPE Ribulose-5-phospha 38.4 1.1E+02 0.0023 30.0 7.1 55 80-135 128-194 (211)
237 PLN02591 tryptophan synthase 38.2 5E+02 0.011 27.3 12.4 98 36-136 110-219 (250)
238 PRK06895 putative anthranilate 38.2 38 0.00083 33.4 4.0 31 34-64 2-32 (190)
239 PRK14949 DNA polymerase III su 38.1 81 0.0018 39.1 7.3 72 79-152 119-193 (944)
240 PF01959 DHQS: 3-dehydroquinat 37.6 2.6E+02 0.0057 31.1 10.4 71 80-151 97-169 (354)
241 TIGR01302 IMP_dehydrog inosine 37.6 2.6E+02 0.0056 31.7 10.8 100 32-135 235-356 (450)
242 cd05212 NAD_bind_m-THF_DH_Cycl 37.3 97 0.0021 29.7 6.4 54 31-91 26-83 (140)
243 PRK09490 metH B12-dependent me 37.2 2E+02 0.0044 37.0 10.7 102 33-136 751-865 (1229)
244 COG2022 ThiG Uncharacterized e 37.1 2E+02 0.0044 30.4 8.9 116 32-151 99-232 (262)
245 PRK08007 para-aminobenzoate sy 37.1 39 0.00085 33.4 3.8 48 36-85 2-49 (187)
246 PRK03708 ppnK inorganic polyph 36.5 2.4E+02 0.0052 30.0 9.8 102 34-155 1-115 (277)
247 TIGR00078 nadC nicotinate-nucl 36.3 4.4E+02 0.0096 27.9 11.7 91 35-134 150-249 (265)
248 PRK06015 keto-hydroxyglutarate 36.2 2.4E+02 0.0052 28.8 9.3 81 61-144 10-91 (201)
249 cd04740 DHOD_1B_like Dihydroor 36.2 5E+02 0.011 27.2 12.2 38 95-132 220-257 (296)
250 PF01081 Aldolase: KDPG and KH 36.0 1E+02 0.0022 31.4 6.5 80 60-143 13-94 (196)
251 PRK14098 glycogen synthase; Pr 35.7 3E+02 0.0064 31.4 11.0 112 33-151 336-450 (489)
252 PF00290 Trp_syntA: Tryptophan 35.7 56 0.0012 34.6 4.8 54 94-147 74-134 (259)
253 TIGR02082 metH 5-methyltetrahy 35.6 2.5E+02 0.0055 35.9 11.2 102 33-136 732-846 (1178)
254 PRK07764 DNA polymerase III su 35.5 1.1E+02 0.0023 37.6 7.8 72 79-152 120-194 (824)
255 PF04309 G3P_antiterm: Glycero 35.3 40 0.00088 33.7 3.6 61 66-132 106-166 (175)
256 cd08185 Fe-ADH1 Iron-containin 35.3 1.8E+02 0.004 31.8 9.0 63 34-101 26-102 (380)
257 KOG1562 Spermidine synthase [A 35.1 1.1E+02 0.0024 33.4 6.9 64 35-100 147-216 (337)
258 TIGR00696 wecB_tagA_cpsF bacte 34.8 2.2E+02 0.0047 28.3 8.6 99 9-111 21-130 (177)
259 TIGR01182 eda Entner-Doudoroff 34.7 2.8E+02 0.0061 28.3 9.6 83 59-144 12-95 (204)
260 PF03328 HpcH_HpaI: HpcH/HpaI 34.3 2.7E+02 0.0059 28.0 9.4 84 64-149 8-106 (221)
261 PLN02476 O-methyltransferase 34.1 2E+02 0.0044 30.8 8.7 59 30-88 140-203 (278)
262 PRK07765 para-aminobenzoate sy 34.0 58 0.0013 33.0 4.6 79 34-113 1-83 (214)
263 TIGR00735 hisF imidazoleglycer 33.9 2.4E+02 0.0051 29.2 9.1 72 63-135 29-103 (254)
264 cd06338 PBP1_ABC_ligand_bindin 33.7 4.6E+02 0.0099 27.3 11.4 66 45-114 157-230 (345)
265 PRK00748 1-(5-phosphoribosyl)- 33.6 2.3E+02 0.005 28.4 8.8 73 63-136 29-104 (233)
266 PLN02589 caffeoyl-CoA O-methyl 33.2 2E+02 0.0043 30.2 8.4 59 30-88 101-165 (247)
267 PRK07455 keto-hydroxyglutarate 32.9 3.8E+02 0.0082 26.6 10.1 86 57-143 14-99 (187)
268 PRK04180 pyridoxal biosynthesi 32.7 1.2E+02 0.0025 32.9 6.7 60 93-152 190-256 (293)
269 COG0742 N6-adenine-specific me 32.6 86 0.0019 31.8 5.4 53 34-87 67-122 (187)
270 PRK15427 colanic acid biosynth 32.5 5.9E+02 0.013 28.0 12.4 51 95-151 319-369 (406)
271 PRK08072 nicotinate-nucleotide 32.5 5.1E+02 0.011 27.7 11.4 92 35-134 160-259 (277)
272 cd03825 GT1_wcfI_like This fam 32.4 1.4E+02 0.003 30.7 7.1 75 34-112 1-82 (365)
273 cd08194 Fe-ADH6 Iron-containin 32.4 3.1E+02 0.0066 30.1 10.1 63 34-101 24-99 (375)
274 cd01573 modD_like ModD; Quinol 32.4 4.9E+02 0.011 27.6 11.3 94 36-134 155-257 (272)
275 PRK04338 N(2),N(2)-dimethylgua 32.3 2.6E+02 0.0057 31.1 9.7 78 34-118 82-162 (382)
276 cd03818 GT1_ExpC_like This fam 32.3 4.1E+02 0.009 28.5 11.1 75 66-151 291-365 (396)
277 TIGR03704 PrmC_rel_meth putati 32.2 4.3E+02 0.0092 27.4 10.7 52 33-87 110-161 (251)
278 cd01568 QPRTase_NadC Quinolina 32.2 4.2E+02 0.0091 28.0 10.7 94 35-134 153-254 (269)
279 COG0159 TrpA Tryptophan syntha 32.1 1.5E+02 0.0032 31.7 7.2 55 94-148 81-142 (265)
280 PRK09922 UDP-D-galactose:(gluc 32.0 3.4E+02 0.0073 28.8 10.2 54 94-152 271-324 (359)
281 PRK11572 copper homeostasis pr 31.8 2.5E+02 0.0055 29.7 8.9 91 41-133 98-196 (248)
282 PF01564 Spermine_synth: Sperm 31.6 41 0.00088 34.9 3.0 61 30-93 97-164 (246)
283 PRK05670 anthranilate synthase 31.5 60 0.0013 31.9 4.1 48 36-85 2-49 (189)
284 cd05844 GT1_like_7 Glycosyltra 31.5 5.3E+02 0.012 26.7 11.4 52 94-151 284-335 (367)
285 TIGR03572 WbuZ glycosyl amidat 31.4 2.6E+02 0.0057 28.2 8.8 72 63-135 29-103 (232)
286 cd03820 GT1_amsD_like This fam 31.2 5.3E+02 0.011 25.5 12.3 108 33-151 209-318 (348)
287 cd08176 LPO Lactadehyde:propan 31.1 3.1E+02 0.0068 30.0 10.0 63 34-101 29-104 (377)
288 PRK01033 imidazole glycerol ph 31.1 2.4E+02 0.0051 29.4 8.6 68 66-134 154-225 (258)
289 PF02581 TMP-TENI: Thiamine mo 31.0 3.4E+02 0.0074 26.4 9.3 69 61-133 100-175 (180)
290 cd08170 GlyDH Glycerol dehydro 30.9 2.4E+02 0.0053 30.4 9.0 76 34-114 23-109 (351)
291 CHL00101 trpG anthranilate syn 30.9 58 0.0012 32.2 3.9 48 36-85 2-49 (190)
292 PRK13585 1-(5-phosphoribosyl)- 30.7 4.6E+02 0.01 26.5 10.5 77 65-143 150-236 (241)
293 PRK01130 N-acetylmannosamine-6 30.7 1.6E+02 0.0035 29.5 7.1 40 94-134 44-93 (221)
294 cd08181 PPD-like 1,3-propanedi 30.7 3.6E+02 0.0078 29.4 10.3 63 34-101 26-102 (357)
295 PRK08185 hypothetical protein; 30.6 1.8E+02 0.0039 31.2 7.7 84 63-153 148-242 (283)
296 cd04726 KGPDC_HPS 3-Keto-L-gul 30.5 1.6E+02 0.0035 28.7 7.0 82 65-148 11-98 (202)
297 PRK09860 putative alcohol dehy 30.4 3.4E+02 0.0075 29.9 10.2 63 34-101 32-107 (383)
298 PRK06552 keto-hydroxyglutarate 30.4 4.8E+02 0.01 26.7 10.5 93 51-145 8-104 (213)
299 PRK14722 flhF flagellar biosyn 30.4 3.9E+02 0.0085 29.8 10.5 87 34-121 168-262 (374)
300 PRK05637 anthranilate synthase 30.2 85 0.0018 31.8 5.0 49 34-85 2-50 (208)
301 PLN02335 anthranilate synthase 29.6 60 0.0013 33.2 3.8 51 33-85 18-68 (222)
302 cd04733 OYE_like_2_FMN Old yel 29.3 4.7E+02 0.01 28.2 10.8 40 95-134 281-320 (338)
303 TIGR03061 pip_yhgE_Nterm YhgE/ 29.3 1.2E+02 0.0026 29.1 5.7 52 31-85 41-102 (164)
304 PF07652 Flavi_DEAD: Flaviviru 29.0 2.2E+02 0.0047 27.9 7.3 86 31-117 31-137 (148)
305 cd01948 EAL EAL domain. This d 28.8 2.4E+02 0.0052 27.6 7.9 89 49-140 137-239 (240)
306 TIGR02855 spore_yabG sporulati 28.8 5.2E+02 0.011 28.0 10.5 55 30-86 101-160 (283)
307 cd04731 HisF The cyclase subun 28.7 2.7E+02 0.0058 28.3 8.4 65 68-134 153-222 (243)
308 PRK13143 hisH imidazole glycer 28.7 1.1E+02 0.0023 30.5 5.4 44 34-85 1-44 (200)
309 PLN02935 Bifunctional NADH kin 28.6 3.8E+02 0.0083 31.2 10.3 58 79-155 262-321 (508)
310 cd03115 SRP The signal recogni 28.6 1.5E+02 0.0033 28.2 6.2 53 33-87 28-90 (173)
311 PRK11359 cyclic-di-GMP phospho 28.6 5.8E+02 0.013 30.1 12.2 98 48-148 682-793 (799)
312 cd01572 QPRTase Quinolinate ph 28.5 6.6E+02 0.014 26.6 11.5 89 35-132 154-251 (268)
313 cd08551 Fe-ADH iron-containing 28.4 3.2E+02 0.0068 29.7 9.4 63 34-101 24-99 (370)
314 PRK02155 ppnK NAD(+)/NADH kina 28.3 5E+02 0.011 27.8 10.6 101 35-154 7-121 (291)
315 PF00977 His_biosynth: Histidi 28.3 2.5E+02 0.0054 28.7 8.1 70 64-134 147-219 (229)
316 COG3010 NanE Putative N-acetyl 28.2 5.4E+02 0.012 26.9 10.1 114 32-149 97-225 (229)
317 PF01993 MTD: methylene-5,6,7, 28.1 1.3E+02 0.0029 31.8 6.0 64 72-138 54-117 (276)
318 TIGR01306 GMP_reduct_2 guanosi 27.9 8.4E+02 0.018 26.8 12.4 98 35-135 110-227 (321)
319 cd00452 KDPG_aldolase KDPG and 27.8 3.9E+02 0.0084 26.3 9.1 69 61-135 102-171 (190)
320 PRK03659 glutathione-regulated 27.8 3E+02 0.0065 32.4 9.6 52 80-134 465-517 (601)
321 PRK01231 ppnK inorganic polyph 27.8 6.6E+02 0.014 27.0 11.4 105 31-154 2-120 (295)
322 TIGR00095 RNA methyltransferas 27.7 3.9E+02 0.0085 26.5 9.1 67 35-101 74-143 (189)
323 cd00532 MGS-like MGS-like doma 27.7 1.4E+02 0.0029 27.1 5.4 25 38-62 6-30 (112)
324 COG0673 MviM Predicted dehydro 27.5 7.3E+02 0.016 25.9 12.8 105 33-150 3-115 (342)
325 cd04724 Tryptophan_synthase_al 27.2 4E+02 0.0086 27.5 9.4 98 36-136 108-216 (242)
326 PRK04128 1-(5-phosphoribosyl)- 27.1 2.8E+02 0.006 28.6 8.2 65 65-134 144-210 (228)
327 PF02254 TrkA_N: TrkA-N domain 27.1 4.3E+02 0.0092 23.1 8.7 74 36-118 1-74 (116)
328 PRK00994 F420-dependent methyl 27.1 1.9E+02 0.0041 30.7 6.8 79 57-138 31-118 (277)
329 cd08182 HEPD Hydroxyethylphosp 27.1 3.1E+02 0.0068 29.8 9.0 62 35-101 25-96 (367)
330 TIGR02149 glgA_Coryne glycogen 27.0 7.5E+02 0.016 25.9 11.8 75 66-151 271-351 (388)
331 cd03801 GT1_YqgM_like This fam 27.0 6.2E+02 0.014 25.0 12.0 65 80-151 276-340 (374)
332 PRK14075 pnk inorganic polypho 26.9 6.7E+02 0.015 26.3 11.1 95 34-155 1-97 (256)
333 PRK03372 ppnK inorganic polyph 26.8 7.9E+02 0.017 26.6 11.9 103 34-155 6-131 (306)
334 cd08171 GlyDH-like2 Glycerol d 26.8 2.1E+02 0.0045 31.0 7.6 77 33-114 22-110 (345)
335 PLN00191 enolase 26.7 4.6E+02 0.0099 30.1 10.5 108 39-147 239-379 (457)
336 cd02809 alpha_hydroxyacid_oxid 26.6 5.9E+02 0.013 27.0 10.8 70 63-135 180-256 (299)
337 PRK13789 phosphoribosylamine-- 26.5 5.3E+02 0.011 29.0 10.9 62 32-95 3-84 (426)
338 PRK04457 spermidine synthase; 26.5 6.9E+02 0.015 26.1 11.1 52 33-87 90-144 (262)
339 cd03804 GT1_wbaZ_like This fam 26.1 4.9E+02 0.011 27.1 10.1 105 34-152 222-326 (351)
340 PRK00077 eno enolase; Provisio 26.0 5E+02 0.011 29.3 10.6 105 40-147 213-347 (425)
341 COG1091 RfbD dTDP-4-dehydrorha 25.9 3.5E+02 0.0076 29.1 8.9 79 34-115 1-101 (281)
342 PRK01033 imidazole glycerol ph 25.9 3.9E+02 0.0084 27.8 9.1 72 63-135 29-103 (258)
343 PRK12723 flagellar biosynthesi 25.8 9.3E+02 0.02 27.0 12.5 92 32-125 205-306 (388)
344 PRK12738 kbaY tagatose-bisphos 25.7 2.4E+02 0.0053 30.3 7.6 84 63-153 154-246 (286)
345 TIGR01302 IMP_dehydrog inosine 25.5 2.5E+02 0.0055 31.8 8.2 54 79-133 236-291 (450)
346 cd08186 Fe-ADH8 Iron-containin 25.4 3.6E+02 0.0079 29.6 9.2 63 34-101 27-103 (383)
347 cd06346 PBP1_ABC_ligand_bindin 25.4 7.7E+02 0.017 25.5 13.6 81 35-119 139-231 (312)
348 PRK05458 guanosine 5'-monophos 25.4 2.3E+02 0.0051 31.0 7.6 53 80-133 112-166 (326)
349 TIGR00736 nifR3_rel_arch TIM-b 25.2 3.4E+02 0.0074 28.2 8.4 95 37-134 115-219 (231)
350 TIGR03449 mycothiol_MshA UDP-N 25.1 8.5E+02 0.018 25.9 12.3 107 34-151 253-367 (405)
351 PLN02617 imidazole glycerol ph 25.0 4.9E+02 0.011 30.5 10.5 68 80-147 453-530 (538)
352 PRK13695 putative NTPase; Prov 25.0 4.4E+02 0.0095 25.1 8.7 72 78-150 95-172 (174)
353 PF00497 SBP_bac_3: Bacterial 24.9 2.2E+02 0.0048 26.8 6.7 52 32-87 109-160 (225)
354 PF13941 MutL: MutL protein 24.8 1.1E+03 0.024 27.2 13.9 122 32-155 75-212 (457)
355 PRK06806 fructose-bisphosphate 24.8 3.2E+02 0.007 29.2 8.4 71 62-134 151-229 (281)
356 PF05582 Peptidase_U57: YabG p 24.7 5.7E+02 0.012 27.7 10.0 57 28-86 100-161 (287)
357 PLN02823 spermine synthase 24.7 1.7E+02 0.0036 32.1 6.3 55 33-90 127-187 (336)
358 cd03785 GT1_MurG MurG is an N- 24.6 8E+02 0.017 25.4 12.7 65 80-151 253-323 (350)
359 TIGR01579 MiaB-like-C MiaB-lik 24.5 5.2E+02 0.011 28.6 10.3 93 43-149 10-107 (414)
360 cd02930 DCR_FMN 2,4-dienoyl-Co 24.5 2.8E+02 0.006 30.2 8.0 39 95-133 265-303 (353)
361 PRK14723 flhF flagellar biosyn 24.4 5.2E+02 0.011 31.8 10.8 133 14-149 194-346 (767)
362 TIGR01306 GMP_reduct_2 guanosi 24.4 2.6E+02 0.0056 30.6 7.6 56 80-135 109-165 (321)
363 PRK07994 DNA polymerase III su 24.3 1.7E+02 0.0037 35.0 6.7 72 79-152 119-193 (647)
364 cd02810 DHOD_DHPD_FMN Dihydroo 24.2 5.8E+02 0.012 26.6 10.1 38 95-132 230-269 (289)
365 TIGR00417 speE spermidine synt 24.2 4.9E+02 0.011 27.1 9.5 56 33-91 96-157 (270)
366 cd04949 GT1_gtfA_like This fam 24.2 7.3E+02 0.016 26.0 11.0 54 93-151 291-344 (372)
367 PRK05567 inosine 5'-monophosph 24.1 3.2E+02 0.007 31.3 8.7 64 67-133 230-295 (486)
368 PLN02274 inosine-5'-monophosph 23.9 3E+02 0.0066 31.9 8.5 67 65-134 248-316 (505)
369 PF03102 NeuB: NeuB family; I 23.9 2.9E+02 0.0063 28.9 7.7 92 47-143 59-160 (241)
370 PRK03562 glutathione-regulated 23.9 4E+02 0.0087 31.5 9.7 91 33-132 423-515 (621)
371 PRK00811 spermidine synthase; 23.7 5.2E+02 0.011 27.3 9.6 58 31-91 98-162 (283)
372 smart00052 EAL Putative diguan 23.6 3.9E+02 0.0085 26.1 8.3 90 48-140 137-240 (241)
373 cd05014 SIS_Kpsf KpsF-like pro 23.5 3E+02 0.0064 24.6 6.9 87 43-137 12-100 (128)
374 PRK10867 signal recognition pa 23.5 7.7E+02 0.017 28.1 11.4 53 33-87 129-191 (433)
375 cd03798 GT1_wlbH_like This fam 23.5 7.3E+02 0.016 24.7 10.4 53 94-152 292-344 (377)
376 TIGR01319 glmL_fam conserved h 23.4 1.2E+03 0.026 27.0 12.9 120 32-154 71-207 (463)
377 PRK00230 orotidine 5'-phosphat 23.4 2.8E+02 0.006 28.5 7.4 78 64-144 12-96 (230)
378 PRK05286 dihydroorotate dehydr 23.3 7E+02 0.015 27.2 10.8 56 96-151 277-341 (344)
379 cd02803 OYE_like_FMN_family Ol 23.3 5.8E+02 0.013 27.0 10.1 41 93-133 268-308 (327)
380 PRK14967 putative methyltransf 23.3 7.4E+02 0.016 24.8 10.3 48 35-87 61-109 (223)
381 cd02940 DHPD_FMN Dihydropyrimi 23.3 5E+02 0.011 27.6 9.5 39 95-133 239-279 (299)
382 PRK07998 gatY putative fructos 23.2 3E+02 0.0065 29.6 7.8 84 63-153 152-243 (283)
383 TIGR00959 ffh signal recogniti 23.1 7.6E+02 0.016 28.1 11.3 102 32-135 127-248 (428)
384 PRK15454 ethanol dehydrogenase 23.1 3.5E+02 0.0076 30.1 8.6 63 34-101 50-125 (395)
385 cd08178 AAD_C C-terminal alcoh 23.0 4.1E+02 0.0088 29.4 9.1 63 34-101 22-97 (398)
386 cd08174 G1PDH-like Glycerol-1- 23.0 4.8E+02 0.01 28.0 9.4 76 34-114 26-107 (331)
387 PRK07807 inosine 5-monophospha 23.0 6.6E+02 0.014 29.0 10.9 101 32-135 238-359 (479)
388 PRK09288 purT phosphoribosylgl 22.9 6.4E+02 0.014 27.3 10.5 55 31-88 10-84 (395)
389 PRK07114 keto-hydroxyglutarate 22.9 8.6E+02 0.019 25.2 10.9 85 58-144 18-106 (222)
390 PRK02290 3-dehydroquinate synt 22.7 3.5E+02 0.0077 30.0 8.2 69 80-150 89-159 (344)
391 PRK02649 ppnK inorganic polyph 22.7 6.3E+02 0.014 27.3 10.2 102 35-155 3-127 (305)
392 PF04131 NanE: Putative N-acet 22.6 2.2E+02 0.0048 29.0 6.2 70 57-134 45-117 (192)
393 PRK09522 bifunctional glutamin 22.5 1.2E+02 0.0027 35.2 5.1 50 34-85 2-54 (531)
394 TIGR03365 Bsubt_queE 7-cyano-7 22.4 7.4E+02 0.016 25.4 10.3 100 35-139 75-187 (238)
395 PRK11036 putative S-adenosyl-L 22.4 7.9E+02 0.017 25.1 10.5 66 33-101 66-135 (255)
396 cd03808 GT1_cap1E_like This fa 22.3 7.4E+02 0.016 24.5 10.1 52 94-151 277-328 (359)
397 PRK04885 ppnK inorganic polyph 22.3 3.6E+02 0.0078 28.5 8.1 57 80-155 36-96 (265)
398 PRK14960 DNA polymerase III su 22.2 2.4E+02 0.0052 34.1 7.4 73 79-153 118-193 (702)
399 PRK10415 tRNA-dihydrouridine s 22.2 6.8E+02 0.015 27.0 10.4 96 37-134 113-223 (321)
400 TIGR01815 TrpE-clade3 anthrani 22.2 1.9E+02 0.0041 35.0 6.7 77 32-112 515-594 (717)
401 cd02810 DHOD_DHPD_FMN Dihydroo 21.9 9.1E+02 0.02 25.1 11.0 69 64-132 108-193 (289)
402 PRK08084 DNA replication initi 21.9 6.4E+02 0.014 25.7 9.6 70 80-150 98-180 (235)
403 cd04951 GT1_WbdM_like This fam 21.8 7E+02 0.015 25.4 10.1 104 33-150 219-324 (360)
404 PRK14329 (dimethylallyl)adenos 21.8 5E+02 0.011 29.5 9.7 97 40-150 34-139 (467)
405 PRK14956 DNA polymerase III su 21.8 2.1E+02 0.0046 33.1 6.6 74 79-152 121-195 (484)
406 COG2247 LytB Putative cell wal 21.8 9.5E+02 0.02 26.6 11.1 104 35-140 30-166 (337)
407 PRK10624 L-1,2-propanediol oxi 21.7 4.2E+02 0.009 29.2 8.8 63 34-101 31-106 (382)
408 PRK02228 V-type ATP synthase s 21.7 5.3E+02 0.012 23.2 8.0 75 34-114 1-78 (100)
409 cd03799 GT1_amsK_like This is 21.7 8.6E+02 0.019 24.7 10.9 52 94-151 275-326 (355)
410 PRK13170 hisH imidazole glycer 21.7 1.6E+02 0.0036 29.2 5.2 44 34-85 1-44 (196)
411 PF07279 DUF1442: Protein of u 21.5 4.3E+02 0.0093 27.6 8.1 73 33-111 69-146 (218)
412 PRK14024 phosphoribosyl isomer 21.5 5.3E+02 0.012 26.5 9.0 82 65-148 147-241 (241)
413 cd03316 MR_like Mandelate race 21.5 2.4E+02 0.0052 30.3 6.8 72 65-138 201-273 (357)
414 cd03806 GT1_ALG11_like This fa 21.4 1E+03 0.022 26.2 11.9 107 33-151 273-391 (419)
415 cd00405 PRAI Phosphoribosylant 21.3 4.2E+02 0.0091 26.2 8.0 51 79-132 120-178 (203)
416 TIGR01425 SRP54_euk signal rec 21.2 5.1E+02 0.011 29.5 9.4 99 33-135 128-248 (429)
417 TIGR00479 rumA 23S rRNA (uraci 21.1 9.4E+02 0.02 26.7 11.5 79 34-114 315-396 (431)
418 cd02801 DUS_like_FMN Dihydrour 21.0 8.2E+02 0.018 24.2 10.9 91 40-132 106-210 (231)
419 TIGR01361 DAHP_synth_Bsub phos 21.0 3.1E+02 0.0067 28.9 7.2 74 65-139 147-234 (260)
420 TIGR00737 nifR3_yhdG putative 20.9 8.8E+02 0.019 25.9 10.9 95 38-134 112-221 (319)
421 COG0626 MetC Cystathionine bet 20.9 6.4E+02 0.014 28.5 10.0 102 28-132 97-204 (396)
422 TIGR00511 ribulose_e2b2 ribose 20.9 3.9E+02 0.0085 28.7 8.1 82 32-118 140-229 (301)
423 TIGR02990 ectoine_eutA ectoine 20.9 7.1E+02 0.015 25.9 9.8 75 34-110 121-210 (239)
424 PRK08649 inosine 5-monophospha 20.9 1.2E+03 0.026 26.0 12.6 66 65-134 142-214 (368)
425 PRK13111 trpA tryptophan synth 20.7 1E+03 0.022 25.1 12.2 98 36-136 121-229 (258)
426 cd08183 Fe-ADH2 Iron-containin 20.7 4.6E+02 0.0099 28.7 8.8 64 33-101 22-94 (374)
427 PRK00941 acetyl-CoA decarbonyl 20.6 1E+03 0.022 29.4 12.2 116 31-152 235-383 (781)
428 cd04732 HisA HisA. Phosphorib 20.6 5.2E+02 0.011 25.8 8.6 72 63-135 28-102 (234)
429 PRK15128 23S rRNA m(5)C1962 me 20.4 3.4E+02 0.0073 30.4 7.7 54 34-87 244-301 (396)
430 PRK11923 algU RNA polymerase s 20.4 2.1E+02 0.0045 27.7 5.5 38 228-268 127-164 (193)
431 PRK13609 diacylglycerol glucos 20.4 1.1E+03 0.023 25.2 12.7 105 33-151 230-337 (380)
432 PRK08535 translation initiatio 20.3 4.6E+02 0.0099 28.3 8.5 82 32-118 145-234 (310)
433 cd06304 PBP1_BmpA_like Peripla 20.2 6.5E+02 0.014 25.1 9.3 65 46-115 20-89 (260)
434 cd06296 PBP1_CatR_like Ligand- 20.2 6.7E+02 0.015 24.7 9.3 67 43-115 15-87 (270)
435 PRK00771 signal recognition pa 20.2 1.1E+03 0.023 27.0 11.7 56 32-88 122-184 (437)
436 COG0118 HisH Glutamine amidotr 20.2 2.4E+02 0.0052 29.1 5.9 38 33-70 1-38 (204)
437 cd06354 PBP1_BmpA_PnrA_like Pe 20.2 5.4E+02 0.012 25.9 8.8 66 44-114 19-89 (265)
438 PRK13586 1-(5-phosphoribosyl)- 20.1 5.1E+02 0.011 26.7 8.5 68 65-134 147-217 (232)
439 COG2200 Rtn c-di-GMP phosphodi 20.0 9.8E+02 0.021 24.7 10.7 112 33-147 121-250 (256)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=3e-20 Score=188.10 Aligned_cols=118 Identities=31% Similarity=0.509 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIM 111 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~iPVII 111 (636)
++|||||||+..++.|...|+..||.|..+.++.+|++.+... ||+||+|++||++||++++++||. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999999999999999999998753 999999999999999999999984 46789999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
+|+.++......++++||+|||+|||+++||.+.++.++|+..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998764
No 2
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.83 E-value=3.8e-20 Score=202.92 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=110.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC--LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~--gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
+++||||||++.+|++|+.++.+. |++| .+|.||.+|++.+++.. |||||+||.||+|||+++++.+++ .+++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 479999999999999999999875 6654 59999999999999876 999999999999999999999974 58899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|++|++++++++.+|+++|+.|||+||++.++|..++.++..+.
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998654
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.82 E-value=9.7e-20 Score=177.91 Aligned_cols=170 Identities=24% Similarity=0.317 Sum_probs=139.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir-~~~~iPV 109 (636)
|...-|.|||||...|+.+..+|+..||.|..+.++.+.|...... .|-++|+|+.||+|+|+++..+|. ....+||
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~~~~PV 79 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERGIRLPV 79 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcCCCCCE
Confidence 3455699999999999999999999999999999999999985443 489999999999999999999996 4578999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHHhhccCC
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 189 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s~sle~~~~~klt~rEie~lssv~eG~ 189 (636)
||+|++.|.....+|++.||.|||.||++...|..+++++++.......+.... .........++.+|.+++..+-.|.
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~-~~~~~~l~tLT~RERqVl~~vV~G~ 158 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQ-AAIRARLATLTPRERQVLDLVVRGL 158 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhcCHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999987532222111100 0011224567899999999999998
Q ss_pred cceeehhhhccccc
Q 006661 190 EGTFKAQRKRISAK 203 (636)
Q Consensus 190 e~~~ka~~k~Is~K 203 (636)
-++.++....|+.+
T Consensus 159 ~NKqIA~dLgiS~r 172 (202)
T COG4566 159 MNKQIAFDLGISER 172 (202)
T ss_pred ccHHHHHHcCCchh
Confidence 88888877766644
No 4
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.81 E-value=4.1e-19 Score=177.43 Aligned_cols=170 Identities=30% Similarity=0.340 Sum_probs=141.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~g-y~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir-~~~~iPVI 110 (636)
++|+|+||++.+|..++.+|.... ++| ..+.++.++++.++... ||+||+|+.||++||+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 579999999999999999998874 765 57888999999987665 99999999999999999999997 56789999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccc-----cCCc-ccccc-cCCCchhHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SGSL-EETDH-HKRGSDEIEYAS 183 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~-----s~sl-e~~~~-~klt~rEie~ls 183 (636)
++|.+++..++.++++.||.+|+.|..+.++|..+++.+..+..+....... .... ..... ..++.+|.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998765333221110 0000 11111 368999999999
Q ss_pred hhccCCcceeehhhhccccccc
Q 006661 184 SVNEGTEGTFKAQRKRISAKEE 205 (636)
Q Consensus 184 sv~eG~e~~~ka~~k~Is~Ke~ 205 (636)
.+.+|..++.++.+..++.+|.
T Consensus 159 lla~G~snkeIA~~L~iS~~TV 180 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEKTV 180 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHhHH
Confidence 9999999999999988887644
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-18 Score=170.69 Aligned_cols=119 Identities=29% Similarity=0.468 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
++|||||||+...+.-+++++.. ||. |.+|.+.++|..++++.+ |||||+|+.||+.+|++++..++. ...+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999987 675 559999999999999877 899999999999999999999974 4578899
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
++|+-.|.+.+.+|+..||.|||+|||..+.|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877653
No 6
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.77 E-value=6.9e-19 Score=183.95 Aligned_cols=65 Identities=55% Similarity=0.835 Sum_probs=62.2
Q ss_pred CCCCCcceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhCc
Q 006661 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLNGV 281 (636)
Q Consensus 217 ~~KKpRVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHLQKyRl~LKrl~~~ 281 (636)
..||+|++||.|||++|++||++||.+||+||+||++|+|+||||+||+|||||||+++|++...
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~r 296 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAR 296 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccch
Confidence 57999999999999999999999999999999999999999999999999999999999988643
No 7
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.76 E-value=8.1e-18 Score=184.80 Aligned_cols=119 Identities=41% Similarity=0.630 Sum_probs=112.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
..+|||||||+.+|..+..+|...||.|.++.++.+|++.+.... ||+||+|+.||++||+++++++++ .+++|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~--~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP--FDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCCEEE
Confidence 357999999999999999999999999999999999999998764 999999999999999999999964 57899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
||++.+.+.+.+|++.||+|||.|||+.++|..++.+++...
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998754
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.75 E-value=3.9e-17 Score=142.36 Aligned_cols=110 Identities=37% Similarity=0.639 Sum_probs=104.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006661 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILS 113 (636)
||||||++..++.++.+|+..+| .|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999899 9999999999999998876 999999999999999999999974 4689999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq 147 (636)
...+.....++++.|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998774
No 9
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.74 E-value=2.2e-16 Score=156.92 Aligned_cols=122 Identities=25% Similarity=0.380 Sum_probs=110.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~-gy-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~ 106 (636)
+|..++||||||++.++..++.+|... ++ .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~ 78 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYP 78 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 467799999999999999999999864 67 4679999999999998765 999999999999999999999975 467
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
.+||++|+..+.+.+.++++.||++||.||++.++|..+++++..++
T Consensus 79 ~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999887654
No 10
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-17 Score=175.03 Aligned_cols=233 Identities=26% Similarity=0.402 Sum_probs=168.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c---C
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E---M 105 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~---~ 105 (636)
-...++||+|||++..+..++.+|+..+|.|..|.++++|+++...+. +|+||+|++||+|||++++.+|+. . .
T Consensus 11 ~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~ 88 (360)
T COG3437 11 PDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTR 88 (360)
T ss_pred CcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccc
Confidence 345689999999999999999999999999999999999999998766 999999999999999999999975 3 4
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHHhh
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSV 185 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s~sle~~~~~klt~rEie~lssv 185 (636)
.+|||++|+..|.+...+|+..||+|||.||+++.+|...+...+..+....... +...|++
T Consensus 89 ~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~~----------------~~~~~le-- 150 (360)
T COG3437 89 RIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLL----------------DQNLYLE-- 150 (360)
T ss_pred ccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH--
Confidence 6899999999999999999999999999999999999998865544332211111 1111111
Q ss_pred ccCCcceeehhhhcccccccccccccCCCCCCCCCCcceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHH
Q 006661 186 NEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVA 265 (636)
Q Consensus 186 ~eG~e~~~ka~~k~Is~Ke~dd~e~e~~d~S~~KKpRVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVA 265 (636)
.. ....++.+ ..+....|-+.+..|. ..+ ..+..++.
T Consensus 151 ---------~~--e~~~~~~e-------------------~~~~~~~~~~t~~~L~-------~~~------E~R~~etg 187 (360)
T COG3437 151 ---------LQ--ELRRRTEE-------------------LAQIEDNLDETLEELA-------ALL------EVRDYETG 187 (360)
T ss_pred ---------HH--HHHHHHHH-------------------HHHHHHHHHHHHHHHH-------HHH------Hhcccchh
Confidence 00 00000000 0111122223333331 222 34778899
Q ss_pred HHHHHHHHHHHHhhCccccCCcccccCCCcccccccCCCCccc--chhhhccCCCChhHHHHHHH
Q 006661 266 SHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD--IQALAASGQIPPQTLAALHA 328 (636)
Q Consensus 266 SHLQKyRl~LKrl~~~a~q~g~s~~~~~p~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~~~~~~ 328 (636)
.|+.+...|.+.+ +...|++..+..-+..+.+|-.+|..- =.-|-..|.+.++-++..+.
T Consensus 188 ~H~~Rv~~~~~~l---Ae~lgLse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~ 249 (360)
T COG3437 188 DHLERVAQYSELL---AELLGLSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKG 249 (360)
T ss_pred hHHHHHHHHHHHH---HHHhCCCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhc
Confidence 9999999999988 788888887776666655665566552 34466777777777766654
No 11
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.69 E-value=3.3e-16 Score=153.83 Aligned_cols=170 Identities=17% Similarity=0.171 Sum_probs=137.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhc-cCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLY-N-VTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy-~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd---mDG~ELLk~Ir~-~~~ 106 (636)
+++||||||++..+..++.+|...++ . +..+.++.++++.+.... ||+||+|+.||+ ++|++++++|+. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 48999999999999999999987654 3 668999999999887654 999999999999 599999999964 577
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccccc---CCcccccccCCCchhHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS---GSLEETDHHKRGSDEIEYAS 183 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s---~sle~~~~~klt~rEie~ls 183 (636)
+|||++|...+.....++++.||++|+.||.+.++|..+++.+..+........... ..........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999998876543222111000 00000112358999999999
Q ss_pred hhccCCcceeehhhhcccccc
Q 006661 184 SVNEGTEGTFKAQRKRISAKE 204 (636)
Q Consensus 184 sv~eG~e~~~ka~~k~Is~Ke 204 (636)
.+.+|.....++.+..++.++
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~T 181 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIKT 181 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHHH
Confidence 999999888888888887653
No 12
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.68 E-value=5.6e-16 Score=181.84 Aligned_cols=151 Identities=25% Similarity=0.323 Sum_probs=131.7
Q ss_pred ChHHHHHHHHcCCC-------CCCCcccccccCCCC------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006661 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (636)
Q Consensus 1 l~~~~~~~~~~gG~-------~~~s~~~~d~~~~d~------------fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~ 61 (636)
|+|++++++.+||. +.|+++.+.+++... ...+++||||||++..+..++.+|...+|.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 58999999999993 567777776654211 11367999999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~e 140 (636)
.+.++.+|++.+... ..||+||+|++||++||+++++.|+. .+.+|||++|++.......+++..|+++||.||++.+
T Consensus 710 ~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 999999999988643 24899999999999999999999975 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006661 141 ELKNIWQHVVRK 152 (636)
Q Consensus 141 eLk~~Iq~vlrk 152 (636)
+|..++.++++.
T Consensus 789 ~L~~~i~~~~~~ 800 (914)
T PRK11466 789 VLGQLLAHYLQL 800 (914)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
No 13
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=1.8e-15 Score=134.97 Aligned_cols=120 Identities=38% Similarity=0.574 Sum_probs=105.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~-eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iP 108 (636)
..+.+||||||++..+..++.+|...++.|..+.++. +|++.++... .||+|++|+.||++||++++++++.. ..+|
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3568999999999999999999999999999999995 9999998751 38999999999999999999999865 6788
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~ee-Lk~~Iq~vlr 151 (636)
+|++|++.......++++.|+.+|+.||+...+ |...+.+++.
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 999999999887788899999999999977666 7777765543
No 14
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.68 E-value=9.5e-16 Score=179.45 Aligned_cols=117 Identities=28% Similarity=0.420 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-----~~i 107 (636)
++|||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|++||++||++++++|+.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 479999999999999999999999999999999999999998654 9999999999999999999999742 568
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|||++|+..+.+...++++.|+++||.||++.++|..++.++.+
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987764
No 15
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.67 E-value=7.8e-16 Score=181.30 Aligned_cols=150 Identities=27% Similarity=0.352 Sum_probs=131.1
Q ss_pred ChHHHHHHHHcCCC-------CCCCcccccccCCCCC------------CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006661 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQF------------PAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (636)
Q Consensus 1 l~~~~~~~~~~gG~-------~~~s~~~~d~~~~d~f------------P~glRVLIVDDD~~~re~L~~lL~~~gy~V~ 61 (636)
|+|+|++++.|||. +.|+++.+.+++...- ..+.+||||||++..+..++.+|...||.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 58999999999993 5677777776643211 1245899999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC---CcEEEEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~---iPVIILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
.+.++.+|++.+.... ||+||+|++||++||+++++.|+.. .. +|||++|++.+.+...+++..|+++||.||+
T Consensus 731 ~~~~~~~a~~~l~~~~--~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQHA--FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999998654 9999999999999999999999753 22 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006661 138 REEELKNIWQHVVRK 152 (636)
Q Consensus 138 ~~eeLk~~Iq~vlrk 152 (636)
+.++|...+.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999887653
No 16
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.67 E-value=9.4e-16 Score=177.70 Aligned_cols=149 Identities=23% Similarity=0.364 Sum_probs=127.0
Q ss_pred ChHHHHHHHHcCCC-------CCCCcccccccCCCC-------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeE
Q 006661 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ-------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (636)
Q Consensus 1 l~~~~~~~~~~gG~-------~~~s~~~~d~~~~d~-------------fP~glRVLIVDDD~~~re~L~~lL~~~gy~V 60 (636)
|+|++++|++|||. +.|++|.+.++++.. -..+++||||||++..+..++.+|+..+|.|
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 58999999999993 677788777654321 0125899999999999999999999999999
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC-CcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 61 ~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~-iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
..+.++.+|++.+.... ||+||+|+.||++||+++++.|+.. .. .|||++|++... ...+++..|+++||.||
T Consensus 553 ~~a~~~~eal~~~~~~~--~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP 629 (779)
T PRK11091 553 DVAMTGKEALEMFDPDE--YDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKP 629 (779)
T ss_pred EEECCHHHHHHHhhcCC--CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECC
Confidence 99999999999997544 9999999999999999999999754 34 488889987654 46789999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 006661 137 IREEELKNIWQHVVRK 152 (636)
Q Consensus 137 i~~eeLk~~Iq~vlrk 152 (636)
++.++|..++++++..
T Consensus 630 ~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 630 LSVPALTAMIKKFWDT 645 (779)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999887643
No 17
>PRK09483 response regulator; Provisional
Probab=99.67 E-value=1.9e-15 Score=145.60 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=135.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
+++|+|+||++..+..++.+|... ++.+. .+.++.+++..+.... ||+||+|+.+|+++|+++++.++. .+.+|+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~i 78 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRYTPDVKI 78 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeE
Confidence 478999999999999999999874 78775 7899999999988654 999999999999999999999964 567999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc------ccCCcccccccCCCchhHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE------NSGSLEETDHHKRGSDEIEYAS 183 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~------~s~sle~~~~~klt~rEie~ls 183 (636)
|++|...+.....+++..|+++|+.||++.++|..+++.+.++......... ............++.+|.+++.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~ 158 (217)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIML 158 (217)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHH
Confidence 9999999999999999999999999999999999999998875432221110 0001111223458999999999
Q ss_pred hhccCCcceeehhhhccccc
Q 006661 184 SVNEGTEGTFKAQRKRISAK 203 (636)
Q Consensus 184 sv~eG~e~~~ka~~k~Is~K 203 (636)
.+..|.....++....++.+
T Consensus 159 ~~~~G~~~~~Ia~~l~is~~ 178 (217)
T PRK09483 159 MITKGQKVNEISEQLNLSPK 178 (217)
T ss_pred HHHCCCCHHHHHHHhCCCHH
Confidence 99888777666666655544
No 18
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.66 E-value=2.6e-15 Score=178.47 Aligned_cols=120 Identities=30% Similarity=0.478 Sum_probs=111.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|++||+|||+++++.|++ ...+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3578999999999999999999999999999999999999998765 999999999999999999999975 4679999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|+..+.+...++++.|+++||.||++.++|..++.++.+..
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876543
No 19
>PLN03029 type-a response regulator protein; Provisional
Probab=99.65 E-value=3.2e-15 Score=149.98 Aligned_cols=122 Identities=28% Similarity=0.560 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC------------------CCceEEEEeCCCCCCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK------------------GCFDVVLSDVHMPDMD 93 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k------------------~~pDLVIlDI~MPdmD 93 (636)
..++||||||++..+..+..+|...+|.|.++.++.+|++.+.... ..+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 4589999999999999999999999999999999999999886542 1367999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 94 GFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 94 G~ELLk~Ir~~---~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|+++++.|+.. .++|||++|+..+.....++++.|+++||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 4789999999999999999999999999999999999999888887654
No 20
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.65 E-value=5.2e-15 Score=143.67 Aligned_cols=118 Identities=28% Similarity=0.383 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.+||||||++..+..+...|...+|.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999999999999999999998876544 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998887653
No 21
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.64 E-value=2.7e-15 Score=181.31 Aligned_cols=149 Identities=24% Similarity=0.450 Sum_probs=130.4
Q ss_pred ChHHHHHHHHcCCC-------CCCCcccccccCCC---------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006661 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPD---------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (636)
Q Consensus 1 l~~~~~~~~~~gG~-------~~~s~~~~d~~~~d---------------~fP~glRVLIVDDD~~~re~L~~lL~~~gy 58 (636)
|+|++++++++||. +.|.++...+++.. ..+.+++||||||++..+..++.+|+..+|
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 58999999999993 45667766655421 123467999999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 59 ~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
.|..+.++.+|++.+.... ||+||+|++||+++|+++++.|+. .+.+|||++|+..+.....++++.|+++||.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQH--YDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999997654 999999999999999999999974 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006661 138 REEELKNIWQHVVR 151 (636)
Q Consensus 138 ~~eeLk~~Iq~vlr 151 (636)
+.++|...++++.+
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887654
No 22
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.64 E-value=1.1e-14 Score=140.01 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
|+|+||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999999999999999999999887654 999999999999999999999974 467999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|+..+.....++++.||.+|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 23
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.64 E-value=3.9e-15 Score=174.04 Aligned_cols=118 Identities=31% Similarity=0.505 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~iPV 109 (636)
.++||||||++..+..++.+|.+.++.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+. ..++||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 478999999999999999999999999999999999999998755 999999999999999999999975 357999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|++|++.+.+...++++.|+++||.||++.++|..++.++...
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999998887643
No 24
>PRK11173 two-component response regulator; Provisional
Probab=99.63 E-value=7.7e-15 Score=144.69 Aligned_cols=119 Identities=20% Similarity=0.412 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
..+||||||++..+..+...|...++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pii~l 80 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEND--INLVIMDINLPGKNGLLLARELREQANVALMFL 80 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 358999999999999999999999999999999999999987654 999999999999999999999987778999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 81 t~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999888764
No 25
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.63 E-value=1.8e-14 Score=144.41 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
++||||||++..++.++.+|... ++.+ ..+.++.++++.+......||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999864 6654 5789999999988642335999999999999999999999964 4679999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
++|+..+...+.+++..|+.+|+.||++.++|..++.++..
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987543
No 26
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=1.2e-14 Score=139.72 Aligned_cols=118 Identities=25% Similarity=0.429 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
|+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP--YDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999988999999999999999887644 999999999999999999999975 467999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|...+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887643
No 27
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.63 E-value=9.6e-15 Score=139.44 Aligned_cols=161 Identities=15% Similarity=0.186 Sum_probs=127.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
|+|+|+||++..+..++..|...++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999998899987 7999999999887654 999999999999999999999975 45789999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc---ccCCcccccccCCCchhHHHHHhhccC
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---NSGSLEETDHHKRGSDEIEYASSVNEG 188 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~---~s~sle~~~~~klt~rEie~lssv~eG 188 (636)
+++..+.....+++..||++|+.||++.++|..+++.++++......... ............++.+|.+++..+..|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998765322111100 000001111235788899999888877
Q ss_pred Ccceeehh
Q 006661 189 TEGTFKAQ 196 (636)
Q Consensus 189 ~e~~~ka~ 196 (636)
.....++.
T Consensus 159 ~~~~~I~~ 166 (204)
T PRK09958 159 KDNNDIAE 166 (204)
T ss_pred CCHHHHHH
Confidence 64433333
No 28
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.63 E-value=1.1e-14 Score=141.45 Aligned_cols=117 Identities=28% Similarity=0.414 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
|+||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999887654 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|+..+.+...++++.||++|+.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988765
No 29
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.62 E-value=3.3e-15 Score=141.75 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=124.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
++||||||++..+..++..|... ++. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++ ..+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRG--VQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 68999999999999999999754 554 568999999999987654 99999999999999999999986 3689999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHHhhccCCcc
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s~sle~~~~~klt~rEie~lssv~eG~e~ 191 (636)
++...+.+....+++.||++|+.||++.++|..+++.++++......+... .........++.+|.+++..+..|...
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~~ 155 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMAV 155 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999999999988753221111100 000111235788899998888877544
Q ss_pred eeehhh
Q 006661 192 TFKAQR 197 (636)
Q Consensus 192 ~~ka~~ 197 (636)
..++..
T Consensus 156 ~~Ia~~ 161 (196)
T PRK10360 156 KEIAAE 161 (196)
T ss_pred HHHHHH
Confidence 444443
No 30
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.62 E-value=1.6e-14 Score=139.93 Aligned_cols=119 Identities=22% Similarity=0.384 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
.++||||||++..+..+...|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH--VDLILLDINLPGEDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 368999999999999999999999999999999999999887654 999999999999999999999987778999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++..+.....++++.||+||+.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887653
No 31
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.61 E-value=1.8e-14 Score=140.28 Aligned_cols=117 Identities=21% Similarity=0.475 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVIIL 112 (636)
|+|||+||++..+..+...|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +++|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999999887654 9999999999999999999999754 67999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|+..+.+...++++.||++|+.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888764
No 32
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.61 E-value=1e-14 Score=159.51 Aligned_cols=122 Identities=34% Similarity=0.509 Sum_probs=113.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~iP 108 (636)
...+||||||+...++.++.+|...||.|..+.++.+|+..+.+.. ||+||+|+.||++||++++++++. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 5789999999999999999999999999999999999999998765 999999999999999999999974 35799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
||+++..++.....+||+.|+.|||.||+...+|...++..++++..
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999888888876543
No 33
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.60 E-value=2.8e-14 Score=140.67 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.+||||||++..+..+...|...+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999999999999999999999987654 9999999999999999999999876678999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9998888899999999999999999999999998887653
No 34
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.60 E-value=3.1e-14 Score=137.49 Aligned_cols=117 Identities=26% Similarity=0.482 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
|+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999988999999999999999887644 9999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+..+.+...++++.||++|+.||++.++|...++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887754
No 35
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.60 E-value=3.4e-14 Score=136.58 Aligned_cols=118 Identities=30% Similarity=0.512 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPV 109 (636)
+.+|||+||++..+..++..|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 468999999999999999999988999999999999999887654 9999999999999999999999753 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|++|+..+.....++++.||++|+.||++.++|...++.++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999888765
No 36
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.59 E-value=3.3e-14 Score=138.07 Aligned_cols=117 Identities=32% Similarity=0.528 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.+||||||++..+..++..|...++.+..+.++.++++.+.. .||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999889999999999999998753 39999999999999999999999765559999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887654
No 37
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.59 E-value=4.4e-14 Score=137.92 Aligned_cols=120 Identities=38% Similarity=0.598 Sum_probs=110.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
..++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ--PDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 3579999999999999999999988999999999999999887654 99999999999999999999998767899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998887653
No 38
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.59 E-value=4.4e-14 Score=137.83 Aligned_cols=117 Identities=29% Similarity=0.485 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPVI 110 (636)
.+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 68999999999999999999988999999999999999887644 9999999999999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
++|...+.....++++.||++||.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988765
No 39
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.59 E-value=4e-15 Score=153.68 Aligned_cols=114 Identities=30% Similarity=0.509 Sum_probs=104.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
+||+|||||......|..+|.+.+..+.+|+...+||+.+...+ ||||++||.||+|+|+|++++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 58999999999999999999999989999999999999999877 999999999999999999999974 578999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|++... ...++...+.|||.||++++.|.+++.++.+
T Consensus 79 ssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 79 SSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred ecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 998754 6778888899999999999999999988763
No 40
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.58 E-value=4.6e-14 Score=140.00 Aligned_cols=117 Identities=25% Similarity=0.449 Sum_probs=106.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa 114 (636)
+||||||++..+..+...|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 7999999999999999999999999999999999999887654 99999999999999999999998767899999998
Q ss_pred C-CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 115 D-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 115 ~-~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
. .+.....++++.||++|+.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 46677789999999999999999999999998887653
No 41
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.57 E-value=7.2e-14 Score=137.43 Aligned_cols=118 Identities=29% Similarity=0.491 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVII 111 (636)
..+|||+||++..+..++..|...+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRES--FHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999887654 9999999999999999999999754 6799999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+++..+.....++++.||++|+.||++.++|...++.++++
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988765
No 42
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.57 E-value=1.2e-14 Score=145.27 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=123.2
Q ss_pred HHHHHHHHHhC---CCeEEEECCHHHHHHHHHHcCCCceEEE---EeCCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCH
Q 006661 46 LRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRV 118 (636)
Q Consensus 46 re~L~~lL~~~---gy~V~tasdg~eALe~Lre~k~~pDLVI---lDI~MPdmDG~ELLk~Ir-~~~~iPVIILSa~~d~ 118 (636)
|.+++.+|... +|.|..+.+++++++.++... ||+|| +|+.||++||++++++|+ ..+.+|||++|++++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~--pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS--FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC--CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 67888899753 566779999999999887544 89998 688999999999999996 4678999999998877
Q ss_pred HHHHHHH-HcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHHhhccCCcceeehhh
Q 006661 119 SAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQR 197 (636)
Q Consensus 119 e~v~kAl-e~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s~sle~~~~~klt~rEie~lssv~eG~e~~~ka~~ 197 (636)
..+.+++ +.||.+||.||.+.++|..+++.++++............ .......++.+|.+++..+.+|..++.++.+
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~--~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQW--YINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHh--hccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 7676766 799999999999999999999999876543222111000 0011345899999999999999999999988
Q ss_pred hcccccc
Q 006661 198 KRISAKE 204 (636)
Q Consensus 198 k~Is~Ke 204 (636)
..++.+|
T Consensus 159 L~iS~~T 165 (207)
T PRK11475 159 LERNIKT 165 (207)
T ss_pred HCCCHHH
Confidence 8887663
No 43
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.57 E-value=1.1e-13 Score=131.90 Aligned_cols=165 Identities=18% Similarity=0.258 Sum_probs=127.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
..+|||+||++..+..++..|... ++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP--VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 368999999999999999999876 57765 7889999999887654 999999999999999999999975 467999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc-c---ccC-CcccccccCCCchhHHHHHh
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-E---NSG-SLEETDHHKRGSDEIEYASS 184 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~-~---~s~-sle~~~~~klt~rEie~lss 184 (636)
|++|...+.....++++.|+++|+.||++.++|..+++.++++........ . ... .........++.+|.+.+..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998876532211110 0 000 00011223478888888888
Q ss_pred hccCCcceeehhhhc
Q 006661 185 VNEGTEGTFKAQRKR 199 (636)
Q Consensus 185 v~eG~e~~~ka~~k~ 199 (636)
+.+|.....++....
T Consensus 161 l~~g~s~~eIa~~l~ 175 (210)
T PRK09935 161 LVSGLSNKEIADQLL 175 (210)
T ss_pred HHcCCCHHHHHHHhC
Confidence 877755555554443
No 44
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.57 E-value=9.5e-14 Score=135.01 Aligned_cols=117 Identities=27% Similarity=0.412 Sum_probs=107.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM 111 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir~~-~~iPVII 111 (636)
+|||+||++..+..+...|...+|.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++.. +.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999998999999999999999887655 999999999998 5899999999753 6799999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.+....+++.||++|+.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888654
No 45
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.57 E-value=7.7e-14 Score=134.60 Aligned_cols=119 Identities=29% Similarity=0.420 Sum_probs=108.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVII 111 (636)
.++||||||++..++.+...|...+|.+..+.++.+++..+.... ||+||+|+.||+.+|+++++.++.. +.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP--PDLVILDVGLPDISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 368999999999999999999988999999999999999887544 9999999999999999999999754 6899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|...+......+++.||++|+.||++.++|...++.++++.
T Consensus 81 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 999999988999999999999999999999999998877643
No 46
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.56 E-value=5.1e-15 Score=119.80 Aligned_cols=54 Identities=69% Similarity=1.065 Sum_probs=52.4
Q ss_pred CCcceecHHHHHHHHHHHHHhcc-CcccHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 006661 220 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQKFRL 273 (636)
Q Consensus 220 KpRVvWt~ELH~kFv~AVnqLGi-dKAvPKkILelMnVpgLTrenVASHLQKyRl 273 (636)
|+|+.||.|+|++|+.||+.+|. +.|+||+|+++|++++||+++|+||+||||+
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 68999999999999999999998 8999999999999999999999999999996
No 47
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.56 E-value=2.2e-14 Score=167.92 Aligned_cols=122 Identities=29% Similarity=0.484 Sum_probs=112.0
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC--
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-- 105 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~-- 105 (636)
..+..|.+||||||+...++..+.+|++.|.+++.+.++.+|++.+. ..+.||+||+|++||.|||+|+.++||+..
T Consensus 661 ~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~ 739 (786)
T KOG0519|consen 661 SKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEATREIRKKERW 739 (786)
T ss_pred cccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHHHHHHHHHhhcC
Confidence 44556899999999999999999999999999999999999999997 235699999999999999999999997544
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
.+|||.|||+.+.+...+|++.|.++||.||++.+.|..+++.++
T Consensus 740 ~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 740 HLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999888765
No 48
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.55 E-value=1.9e-13 Score=131.00 Aligned_cols=116 Identities=29% Similarity=0.519 Sum_probs=107.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa 114 (636)
|||+||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 689999999999999999988999999999999999887654 999999999999999999999974 56899999999
Q ss_pred CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 115 ~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999887654
No 49
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.55 E-value=9.2e-14 Score=137.37 Aligned_cols=116 Identities=27% Similarity=0.423 Sum_probs=100.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g-y~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
+++|+||||++..++.++.+|...+ +. +..+.++.++++.+.... ||+||+|+.||++||+++++.++.....++|
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii 78 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLK--PDVVFLDIQMPRISGLELVGMLDPEHMPYIV 78 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHhcccCCCEEE
Confidence 3799999999999999999998876 33 457899999999887654 9999999999999999999998644445688
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
++|++. +.+.++++.||.+||.||++.++|..++.++.+.
T Consensus 79 ~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 79 FVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888765 4678999999999999999999999999988754
No 50
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.54 E-value=1e-13 Score=137.99 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=129.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCHHHHHHHHhc-cCCC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIGL-EMDL 107 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy---~V~tasdg~eALe~Lre~k~~pDLVIlDI~--MPdmDG~ELLk~Ir~-~~~i 107 (636)
|.|+||||++.+++.++.+|...++ .|..+.++.++++.+.... ||+||+|+. |+..+|++++++|+. .+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~--pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR--PSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC--CCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999986542 4568999999999887554 999999966 888899999999964 5789
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCe-EEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHHhhc
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~D-YLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s~sle~~~~~klt~rEie~lssv~ 186 (636)
+||++|+.++..... ++..|+.. |+.|+.+.++|..+++.+..+........ .. ....++.+|.+++..+.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~~-~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------NL-PTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------cC-CcccCCHHHHHHHHHHH
Confidence 999999998876543 55555554 89999999999999999987654322110 00 11248999999999999
Q ss_pred cCCcceeehhhhccccccc
Q 006661 187 EGTEGTFKAQRKRISAKEE 205 (636)
Q Consensus 187 eG~e~~~ka~~k~Is~Ke~ 205 (636)
+|...+.++.+..++.++.
T Consensus 151 ~G~snkeIA~~L~iS~~TV 169 (207)
T PRK15411 151 AGQGTIQISDQMNIKAKTV 169 (207)
T ss_pred cCCCHHHHHHHcCCCHHHH
Confidence 9999999998888876643
No 51
>PRK14084 two-component response regulator; Provisional
Probab=99.53 E-value=2.3e-13 Score=135.71 Aligned_cols=115 Identities=19% Similarity=0.380 Sum_probs=100.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~g-y-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVI 110 (636)
|+||||||++..+..++.+|...+ + .+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. ...++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~--~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQ--YDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999998764 4 5678999999999987654 9999999999999999999999754 456788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
++|++.+ ...++++.||.+||.||++.++|..+++++.+.
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 8887654 577999999999999999999999999988754
No 52
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.53 E-value=6.3e-14 Score=140.85 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=127.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH-HHHhc-cCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIGL-EMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELL-k~Ir~-~~~iPVI 110 (636)
..+|++|||++..+.+|+.+|....-.+..+.++.++++.+. .|||||+|+.||+++|++++ +.++. .+.++||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 456999999999999999999864444567889999988643 28999999999999999997 55654 5789999
Q ss_pred EEecCCCHHHHHHHHH--cCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc-----ccCC--cccccccCCCchhHHH
Q 006661 111 MMSADGRVSAVMRGIR--HGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSGS--LEETDHHKRGSDEIEY 181 (636)
Q Consensus 111 ILSa~~d~e~v~kAle--~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~-----~s~s--le~~~~~klt~rEie~ 181 (636)
++|+.++. ...++. .||.+|+.|+.+.++|.++++.+.++......... .... ........++.+|.++
T Consensus 86 vlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~V 163 (216)
T PRK10100 86 LLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEI 163 (216)
T ss_pred EEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHHHH
Confidence 99998773 455665 49999999999999999999999876543222110 0000 0001123589999999
Q ss_pred HHhhccCCcceeehhhhccccccc
Q 006661 182 ASSVNEGTEGTFKAQRKRISAKEE 205 (636)
Q Consensus 182 lssv~eG~e~~~ka~~k~Is~Ke~ 205 (636)
+..+..|..+..++....++.++.
T Consensus 164 l~l~~~G~s~~eIA~~L~iS~~TV 187 (216)
T PRK10100 164 LNKLRIGASNNEIARSLFISENTV 187 (216)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHH
Confidence 999999988888888777765543
No 53
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.52 E-value=6.2e-14 Score=149.65 Aligned_cols=119 Identities=22% Similarity=0.436 Sum_probs=107.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~i 107 (636)
....+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.+.+ ||+||+|++||+++|+++++.+++. +.+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~ 229 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYV 229 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCC
Confidence 3567899999999999999999976 477778999999999876654 9999999999999999999999742 689
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|||++|++++.+++.+|++.||+|||.||++.++|...+....++
T Consensus 230 ~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred cEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888776543
No 54
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.51 E-value=8.9e-13 Score=126.60 Aligned_cols=118 Identities=28% Similarity=0.503 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
|+|+++||++..+..++..|...++.+..+.++.++++.+.... ||+||+|+.+|+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEM--YALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999998887644 999999999999999999999964 467999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+...+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998887654
No 55
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.51 E-value=3.5e-13 Score=136.24 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-C--CC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M--DL 107 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~--~i 107 (636)
.++||||||++..+..+..+|... ++.+ ..+.++.++++.+.... ||+||+|+.||++||+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 579999999999999999999864 4554 47999999999998755 9999999999999999999999743 2 37
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|+|++|+..+.....++++.|+++|+.||++.++|...+++++.+
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999887653
No 56
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.51 E-value=1.7e-13 Score=130.25 Aligned_cols=112 Identities=24% Similarity=0.454 Sum_probs=105.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILS 113 (636)
..||||||..++..|.+.+++.||.|.++.+.++||..++... |.-.++|+.|.+.+|+++++.|+. ..+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999998765 999999999999999999999974 5789999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~ 148 (636)
++.+...+.+|++.|||+||.||-+.+++..++..
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999999877653
No 57
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.50 E-value=7.7e-13 Score=124.34 Aligned_cols=168 Identities=18% Similarity=0.241 Sum_probs=128.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
..++|||+||++..+..+...|... ++.+ ..+.++.++++.+.... ||+||+|+.|++++|+++++.++. .+..|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRWPAMN 79 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCc
Confidence 3578999999999999999999875 4664 47899999998877654 999999999999999999999964 46789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccc-----ccccCCcccccccCCCchhHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE-----HENSGSLEETDHHKRGSDEIEYAS 183 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke-----~~~s~sle~~~~~klt~rEie~ls 183 (636)
+|+++...+......++..|+.+|+.||++.++|...++.++++....... ..............++.+|.+++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~ 159 (211)
T PRK15369 80 ILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILK 159 (211)
T ss_pred EEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999887643211100 000000111223457888888888
Q ss_pred hhccCCcceeehhhhccc
Q 006661 184 SVNEGTEGTFKAQRKRIS 201 (636)
Q Consensus 184 sv~eG~e~~~ka~~k~Is 201 (636)
.+.+|.....++....++
T Consensus 160 l~~~g~~~~~Ia~~l~~s 177 (211)
T PRK15369 160 LITEGYTNRDIAEQLSIS 177 (211)
T ss_pred HHHCCCCHHHHHHHhCCC
Confidence 888776655555444333
No 58
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.50 E-value=2.4e-13 Score=127.18 Aligned_cols=120 Identities=31% Similarity=0.477 Sum_probs=108.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
|.+.+|||+||++..+..++..|...+|.+..+.++.++++.+.... ||+||+|+.|++++|+++++.++. .+.+|+
T Consensus 1 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~i 78 (202)
T PRK09390 1 SDKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLR--FGCVVTDVRMPGIDGIELLRRLKARGSPLPV 78 (202)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCE
Confidence 34578999999999999999999988999999999999998887544 999999999999999999999964 467899
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|+++...+......+++.|+.+|+.||++.+++...++.++..
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888887764
No 59
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.49 E-value=3.1e-13 Score=146.64 Aligned_cols=119 Identities=37% Similarity=0.623 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
..++||||||++..+..++.+|...+|.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 4589999999999999999999999999999999999999887644 999999999999999999999964 4678999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
++|++.+.+...++++.|+.+|+.||++.++|...+++++.+
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764
No 60
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.49 E-value=5.4e-13 Score=156.80 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=127.9
Q ss_pred ChHHHHHHHHcCCC-------CCCCcccccccCCCCC---------------CCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006661 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQF---------------PAGLRVLVVDDDITCLRILEQMLRRCLY 58 (636)
Q Consensus 1 l~~~~~~~~~~gG~-------~~~s~~~~d~~~~d~f---------------P~glRVLIVDDD~~~re~L~~lL~~~gy 58 (636)
|+|++++++.+||. +.|.++...++....- ..+.+||||||++..+..++..|...||
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 58999999999993 5566776665432111 1256899999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 59 ~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
+|..+.++.++++.+......||+||+ .||+++|+++++.|+. .+.+|||++++..+.....+++..| ++||.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999999765445899999 7999999999999964 5679999999999999999999999 99999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006661 138 REEELKNIWQHVVRK 152 (636)
Q Consensus 138 ~~eeLk~~Iq~vlrk 152 (636)
+.++|..+++++++.
T Consensus 800 ~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 800 SSRTLAYALRTALAT 814 (828)
T ss_pred CHHHHHHHHHHHHcc
Confidence 999999999988764
No 61
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.49 E-value=6.1e-13 Score=126.32 Aligned_cols=163 Identities=23% Similarity=0.257 Sum_probs=125.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPV 109 (636)
.++|||+||++..+..++..|.. .++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLD--PDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 37899999999999999999975 467765 7899999999887654 9999999999999999999999754 56899
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc-----c-ccCCcccccccCCCchhHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----E-NSGSLEETDHHKRGSDEIEYAS 183 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~-----~-~s~sle~~~~~klt~rEie~ls 183 (636)
|+++...+......+++.|+++|+.||++.++|...++.++++........ . ............++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 999999998899999999999999999999999999998765432111000 0 0000011112357889999998
Q ss_pred hhccCCcceeehhh
Q 006661 184 SVNEGTEGTFKAQR 197 (636)
Q Consensus 184 sv~eG~e~~~ka~~ 197 (636)
.+.+|.....++..
T Consensus 164 ~~~~g~s~~~ia~~ 177 (215)
T PRK10403 164 ELAQGLSNKQIASV 177 (215)
T ss_pred HHHCCCCHHHHHHH
Confidence 88877555444443
No 62
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.49 E-value=1e-12 Score=125.11 Aligned_cols=168 Identities=18% Similarity=0.299 Sum_probs=129.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
...+||||||++..+..++.+|... ++.+ ..+.++.+++..+.... ||+||+|+.+++++|+++++.++. .+..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3478999999999999999999764 5654 47899999999887654 999999999999999999999964 46789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc--------cccCCcccccccCCCchhHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH--------ENSGSLEETDHHKRGSDEIE 180 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~--------~~s~sle~~~~~klt~rEie 180 (636)
+|+++...+......+++.|+.+|+.||++.++|...++.++++........ .............++.+|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999999876532111100 00000001112247889999
Q ss_pred HHHhhccCCcceeehhhhccc
Q 006661 181 YASSVNEGTEGTFKAQRKRIS 201 (636)
Q Consensus 181 ~lssv~eG~e~~~ka~~k~Is 201 (636)
++..+.+|..+..++....++
T Consensus 163 vl~~l~~g~~~~~ia~~l~is 183 (216)
T PRK10651 163 ILKLIAQGLPNKMIARRLDIT 183 (216)
T ss_pred HHHHHHcCCCHHHHHHHcCCC
Confidence 999888886665555544333
No 63
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.48 E-value=1.5e-12 Score=127.14 Aligned_cols=117 Identities=27% Similarity=0.436 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.+|||+||++..+..+..+|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP--PDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 38999999999999999999999999999999999999887654 9999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
...+......+++.||.+|+.||++.++|...++.++++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 999988889999999999999999999999988887764
No 64
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=6.8e-13 Score=144.83 Aligned_cols=120 Identities=34% Similarity=0.530 Sum_probs=109.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
++...+||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 1 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~~~~p 78 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHETRTP 78 (457)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 355678999999999999999999999999999999999999987654 999999999999999999999964 46799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
||++|++.+.+...++++.|+.||+.||++.++|...+++++.
T Consensus 79 vI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 79 VILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999988887654
No 65
>PRK15115 response regulator GlrR; Provisional
Probab=99.46 E-value=8.2e-13 Score=144.02 Aligned_cols=118 Identities=30% Similarity=0.528 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
..+||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~--~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK--VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 379999999999999999999999999999999999999987654 999999999999999999999964 46789999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+|+..+.+...++++.||.+|+.||++.++|...++++++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 66
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.46 E-value=1.4e-12 Score=143.43 Aligned_cols=117 Identities=35% Similarity=0.495 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
.+||||||++..+..++.+|...+|.|..+.++.+|+..+.... ||+||+|+.||++||+++++.++. .+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999999999999999999999998654 999999999999999999999964 467899999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|++.+.+...++++.|+.+|+.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 67
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.45 E-value=1.3e-12 Score=138.37 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=91.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~-~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
+|||||||++..+..++.+|. ..++.+. .+.++.+|++.+.... ||+|++|+.||+|+|++++++|+....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5578775 7899999999998755 99999999999999999999997766799999
Q ss_pred EecCCC--HHHHHHHHHcCCCeEEeCCC
Q 006661 112 MSADGR--VSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 112 LSa~~d--~e~v~kAle~GA~DYLlKPi 137 (636)
+++..+ .+...++++.|+.+|+.||+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 998754 56677899999999999999
No 68
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.43 E-value=1.7e-12 Score=141.54 Aligned_cols=112 Identities=25% Similarity=0.413 Sum_probs=103.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHhc-cCCCcE
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd-----mDG~ELLk~Ir~-~~~iPV 109 (636)
||||||++..+..+...| .+|.|..+.++.+|++.+.... ||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 6899999999999999998754 999999999996 899999999964 567999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|++|+..+.+...++++.||+|||.||++.++|..++++++.
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999988765
No 69
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.42 E-value=1.3e-11 Score=105.21 Aligned_cols=118 Identities=33% Similarity=0.570 Sum_probs=105.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iP 108 (636)
.++|+++|+++.....++..|...++. +..+.++.+++..+.... +|++++|..+++++|+++++.++.. ..+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--FGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccC--CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988884 778899999999887654 9999999999999999999999753 4689
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+|+++...+.....++++.|+.+|+.||++.+++...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999887654
No 70
>PRK13435 response regulator; Provisional
Probab=99.42 E-value=4.8e-12 Score=116.09 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=101.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MP-dmDG~ELLk~Ir~~~~iPVI 110 (636)
.++|||+|+++..+..++..|...++.+. .+.++.++++.+.... ||+||+|+.++ +.+|+++++.++....+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQ--PDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcC--CCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 57999999999999999999998889876 7899999999886544 99999999998 58999999999766789999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+++...+. ..++..|+++|+.||++.++|...++++..++
T Consensus 83 ~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 83 FMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred EEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 99976542 46788999999999999999999999887554
No 71
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.40 E-value=3.6e-12 Score=139.57 Aligned_cols=115 Identities=35% Similarity=0.527 Sum_probs=106.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa 114 (636)
||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ--PDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999999999999999999999887654 999999999999999999999964 46789999999
Q ss_pred CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 115 ~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+.+.....++++.|+.+|+.||++.++|...+++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887754
No 72
>PRK13557 histidine kinase; Provisional
Probab=99.39 E-value=7.1e-12 Score=136.74 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=126.5
Q ss_pred ChHHHHHHHHcCCC-------CCCCcccccccCCCC--------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCe
Q 006661 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ--------------FPAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (636)
Q Consensus 1 l~~~~~~~~~~gG~-------~~~s~~~~d~~~~d~--------------fP~glRVLIVDDD~~~re~L~~lL~~~gy~ 59 (636)
|++++++++.+||. +.|..+...++.... -+.+.+|||+||++..+..+..+|...+|.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 57899999999993 556666655543211 012568999999999999999999998999
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 60 V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
+..+.++.++++.+... ..||+||+|..|++ ++|+++++.|+. .+.+|+|+++...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999988643 24999999999997 999999999975 4678999999999888888899999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006661 138 REEELKNIWQHVVR 151 (636)
Q Consensus 138 ~~eeLk~~Iq~vlr 151 (636)
+.++|...++.++.
T Consensus 521 ~~~~l~~~l~~~~~ 534 (540)
T PRK13557 521 RRAELARRVRMVLD 534 (540)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999998887654
No 73
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.39 E-value=9.8e-12 Score=132.82 Aligned_cols=117 Identities=35% Similarity=0.521 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPVI 110 (636)
.+||||||++..+..+...|...+|.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 48999999999999999999988999999999999999998654 9999999999999999999999753 368999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
++|+..+.....+++..||++|+.||++.++|..++..+.+.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754
No 74
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.37 E-value=8.5e-12 Score=132.82 Aligned_cols=104 Identities=33% Similarity=0.454 Sum_probs=91.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.++||||||+...+..++.+|... ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 78776 8999999999887655 9999999999999999999999765559999
Q ss_pred EEecCC--CHHHHHHHHHcCCCeEEeCCCC
Q 006661 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (636)
Q Consensus 111 ILSa~~--d~e~v~kAle~GA~DYLlKPi~ 138 (636)
++|+.. ......++++.|+++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999764 3466788999999999999994
No 75
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.35 E-value=6.4e-12 Score=134.24 Aligned_cols=104 Identities=35% Similarity=0.471 Sum_probs=94.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.+|||||||....|+.++++|...+ +.|.++.|+.+|++++.+.. ||+|.+|+.||.|||+++++.|-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999986 56779999999999999876 9999999999999999999999766899999
Q ss_pred EEecCCC--HHHHHHHHHcCCCeEEeCCCC
Q 006661 111 MMSADGR--VSAVMRGIRHGACDYLIKPIR 138 (636)
Q Consensus 111 ILSa~~d--~e~v~kAle~GA~DYLlKPi~ 138 (636)
|+|+... .+...+|+++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9987654 567789999999999999964
No 76
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.34 E-value=1e-11 Score=141.76 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=103.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
.++||||||++..+..+..+|...+|.|..+.++.+++..+.... |||||+|+.||+++|++++++|+. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999888999999999999999887644 999999999999999999999974 56799999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHH--HHHHHHHHHHHH
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREE--ELKNIWQHVVRK 152 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~e--eLk~~Iq~vlrk 152 (636)
+|+..+.+...+++..|+.+|+.||.... .+..+++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997543 555556555543
No 77
>PRK09191 two-component response regulator; Provisional
Probab=99.26 E-value=1.2e-10 Score=116.80 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=98.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~~~~iPVI 110 (636)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+.... ||+||+|+.||+ ++|+++++.++....+|+|
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~--~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTR--PGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccC--CCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35799999999999999999998888887 7889999999987654 999999999995 8999999999754489999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
++|...+... .+...|+.+|+.||++.++|...++++..
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 9999876543 34456788999999999999999988754
No 78
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.22 E-value=9.2e-11 Score=115.69 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=103.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
..+|||++||++..+..++..|...||.+ ..+.++.++.+.+.... ||+||+|+.||..|-.+-+.........|||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIV 81 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEE
Confidence 35799999999999999999999999975 47778888888887765 9999999999999944444444556778999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
++|++++...+.++++.|+..||+||++...|+.++.-+..+
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~sr 123 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSR 123 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999988877654
No 79
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.19 E-value=4.4e-10 Score=90.92 Aligned_cols=111 Identities=36% Similarity=0.583 Sum_probs=99.0
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecC
Q 006661 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSAD 115 (636)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~ 115 (636)
+++|+++..+..+...+...++.+..+.+..+++..+.... +|++|+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK--PDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCC--CCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 47899999999999999988999999999999999887654 999999999999999999999965 467899999988
Q ss_pred CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 116 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 116 ~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
.+.....+++..|+.+|+.||++.++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8888888999999999999999999998887653
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=99.07 E-value=8.6e-10 Score=115.78 Aligned_cols=89 Identities=25% Similarity=0.469 Sum_probs=79.8
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC-CH
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI-RE 139 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi-~~ 139 (636)
.+.++.+|++.+.... ||+||+|+.||+++|++++++++. ...+|||++|+..+.+.+.++++.||+|||.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~~--pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGFT--PDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 4788999999987654 999999999999999999999975 3679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHH
Q 006661 140 EELKNIWQHVVRK 152 (636)
Q Consensus 140 eeLk~~Iq~vlrk 152 (636)
++|...+.++++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988887654
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.04 E-value=1.1e-09 Score=112.20 Aligned_cols=116 Identities=28% Similarity=0.449 Sum_probs=99.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
+++|++|||++..++.++.++... .++ +..+.++.++++.+.... +|++++||.||+++|+++.+.|+. .+..+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fldI~~~~~~G~ela~~i~~~~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLR--PDLVFLDIAMPDINGIELAARIRKGDPRPAI 78 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccC--CCeEEEeeccCccchHHHHHHhcccCCCCeE
Confidence 478999999999999999999842 222 337899999999998764 999999999999999999999986 456778
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+++|++++. +..+++..|.|||.||++.+.|...+..+.+.
T Consensus 79 vfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 79 VFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 889987654 77888999999999999999999999876553
No 82
>PRK15029 arginine decarboxylase; Provisional
Probab=98.90 E-value=1.2e-08 Score=119.07 Aligned_cols=115 Identities=12% Similarity=0.190 Sum_probs=90.1
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH----HHHHHH
Q 006661 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF----KLLEHI 101 (636)
Q Consensus 34 lRVLIVDDD~~--------~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~----ELLk~I 101 (636)
|||||||||.. .++.|+..|+..+|+|..+.++.+|++.+... ..||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999763 249999999999999998 899999
Q ss_pred hc-cCCCcEEEEecCCC--HHHHHHHHHcCCCeEEeCCCCHHHH-HHHHHHHH
Q 006661 102 GL-EMDLPVIMMSADGR--VSAVMRGIRHGACDYLIKPIREEEL-KNIWQHVV 150 (636)
Q Consensus 102 r~-~~~iPVIILSa~~d--~e~v~kAle~GA~DYLlKPi~~eeL-k~~Iq~vl 150 (636)
|. ..++|||++|+..+ .......+ --+.+|+-+--+..++ ...+....
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTADFIAGRAVAAM 131 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHHHHHHHHHHHH
Confidence 75 46899999999986 33333322 3356787776544443 33344443
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.13 E-value=2.3e-05 Score=92.46 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=117.0
Q ss_pred ChHHHHHHHHcCCC-------CCCCcccccccCCC-----------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEE
Q 006661 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPD-----------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (636)
Q Consensus 1 l~~~~~~~~~~gG~-------~~~s~~~~d~~~~d-----------~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~t 62 (636)
|+|++++++.|||. +.|+++.+.+++.. ....+.+|+|+||++..+..+..+|..+++.|..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 58999999999993 56777777766421 1235789999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hc--cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCH
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I-r~--~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~ 139 (636)
+.+..+ +.. ..||++|+|+.||++++.+.+... +. ....++|+++...+......+.+.|+++|+.||+..
T Consensus 566 ~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 988887 232 349999999999998877665544 32 234568888888888889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006661 140 EELKNIWQHVV 150 (636)
Q Consensus 140 eeLk~~Iq~vl 150 (636)
.++...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99988887654
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.06 E-value=4e-06 Score=92.64 Aligned_cols=94 Identities=35% Similarity=0.511 Sum_probs=83.5
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 57 gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
.|+|.++..+.+++..+.... +|++++|++||+|||+++++++++.+.. ++++|+..+.....++++.|+.+||+||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 467778999999999998765 9999999999999999999999876555 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 006661 137 IREEELKNIWQHVVRKR 153 (636)
Q Consensus 137 i~~eeLk~~Iq~vlrkk 153 (636)
++...+......+.+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99999988887776644
No 85
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.97 E-value=1e-05 Score=96.93 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=65.9
Q ss_pred ChHHHHHHHHcCC-------CCCCCcccccccCCC----------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 006661 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPD----------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (636)
Q Consensus 1 l~~~~~~~~~~gG-------~~~~s~~~~d~~~~d----------~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~ta 63 (636)
|+||+++|+.||| .+.|++|...+++.. ....+.+|||+||++..++.++.+|+.+|+.|..+
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 5899999999999 377888888776521 12257899999999999999999999999999988
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCC
Q 006661 64 SQAAVALDILRERKGCFDVVLSDVHM 89 (636)
Q Consensus 64 sdg~eALe~Lre~k~~pDLVIlDI~M 89 (636)
.++. . ...||+||+|+++
T Consensus 720 ~~~~------~--~~~~Dlvl~D~~~ 737 (894)
T PRK10618 720 DERL------I--SQEYDIFLTDNPS 737 (894)
T ss_pred Cccc------c--CCCCCEEEECCCC
Confidence 7632 1 2349999999984
No 86
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.44 E-value=0.0011 Score=46.49 Aligned_cols=55 Identities=40% Similarity=0.643 Sum_probs=48.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MP 90 (636)
++|+++|+++..+..+...+...++.+..+.+..+++..+.... +|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEK--PDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCC
Confidence 47999999999999999999988999999999999998886544 99999998653
No 87
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.24 E-value=0.0024 Score=58.14 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=74.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE-eCCCCCCCHHHHHHHH-hccCCCcEEEE
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS-DVHMPDMDGFKLLEHI-GLEMDLPVIMM 112 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl-DI~MPdmDG~ELLk~I-r~~~~iPVIIL 112 (636)
||||||||..-+..|+.+|+-.|+.+..++...- ........ .+.+++ ....+ ...++++.+ +..+.+||+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999999999888776443 22233222 444433 33333 445667766 45688999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
......... ..+.+-|..|++..+|..+++++
T Consensus 76 g~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 877765111 11666789999999999998875
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.82 E-value=0.22 Score=45.87 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=79.0
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhcc-
Q 006661 35 RVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE- 104 (636)
Q Consensus 35 RVLIV----DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPdm--DG~ELLk~Ir~~- 104 (636)
||++. |.|..=...+..+|+..||+|.. ....++.++.+.+.+ +|+|.+-..++.. .--++++.+++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 45555 77788888899999999999874 345778888888765 9999998776532 123455666544
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~I 146 (636)
+.-..|++.+....+...++.++|++.|+-.--+.++....+
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 434456666555566677888999999999888888776544
No 89
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.65 E-value=0.38 Score=45.68 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=84.3
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006661 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (636)
Q Consensus 33 glRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPdm--DG~ELLk~Ir~ 103 (636)
+.+||+. |.|..-...+..+|+..||+|+. ....++.++.+.+.. +|+|.+-..|... .--++++.+++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4678888 88889999999999999999975 446788888887765 9999998877742 33456666754
Q ss_pred c-C-CCcEEEEecCC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 104 E-M-DLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 104 ~-~-~iPVIILSa~~------d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
. . +++|+ +.+.. ..+...++.+.|++......-+.+++...+++.+
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3 55444 33332 3455677889998888888888888887776654
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.22 E-value=0.22 Score=45.17 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=65.7
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccCC-CcEEEEe
Q 006661 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMD-LPVIMMS 113 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir~~~~-iPVIILS 113 (636)
|.+..=...+..+|+..||+|.. ....++.++.+.+.+ ||+|.+-..+.. .+..++++.+++... -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 67778888999999999999864 345677788887765 999999876554 234566777765432 3445566
Q ss_pred cCCCHHHHHHHHHcCCCeEEeC
Q 006661 114 ADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlK 135 (636)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 5555444457788999766653
No 91
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.09 E-value=0.19 Score=46.01 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHh-ccCCCcEEEEecCCCHHHH
Q 006661 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVIMMSADGRVSAV 121 (636)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir-~~~~iPVIILSa~~d~e~v 121 (636)
....|...|...+++|+.+.+.++++..++... .+..|++|+. ++ ....++++.++ ....+||.+++.+...+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 345677788878999999999999999998753 6899999986 21 23456788885 4678999999987755555
Q ss_pred HHHHHcCCCeEEeCCC-CHHHHHHHHHHHHH
Q 006661 122 MRGIRHGACDYLIKPI-REEELKNIWQHVVR 151 (636)
Q Consensus 122 ~kAle~GA~DYLlKPi-~~eeLk~~Iq~vlr 151 (636)
-..+-..+++|+...- +.+.+...+..+++
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 5556667788888875 45555566666554
No 92
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.82 E-value=1.2 Score=42.18 Aligned_cols=116 Identities=10% Similarity=-0.010 Sum_probs=79.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHH-HHHHHHhcc
Q 006661 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDGF-KLLEHIGLE 104 (636)
Q Consensus 34 lRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~-ELLk~Ir~~ 104 (636)
.||++. |-|..-...+..+|+..||+|.. ..+.++.++.+.+.. +|+|.+-..+.. +..+ ++++.|++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455544 66677788889999999999974 457888888888765 898888665532 2222 344555542
Q ss_pred -CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 105 -MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 105 -~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.....|++-+....+...+..++|+++|+..--+..++...+.+.+.
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 22234555544445556778899999999988888888877776554
No 93
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=91.99 E-value=0.43 Score=36.90 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=38.8
Q ss_pred ceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006661 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFR 272 (636)
Q Consensus 223 VvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHLQKyR 272 (636)
-.||.|-+..|+++|.+.|.+ .-++|.+.|. ++-|..++.+|.++|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 469999999999999999966 4578998866 5899999999988774
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=90.62 E-value=2.6 Score=50.25 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=73.5
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006661 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (636)
Q Consensus 34 lRVLIVDDD~-~-----~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir-~~~~ 106 (636)
|+|+|||++- . -.+.|.+-|++.||+|..+.+..+++..++.. .....|++|+.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788898873 2 24566677778899999999999999988843 4688999995332 355788875 4578
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVR 151 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi-~~eeLk~~Iq~vlr 151 (636)
+||+++........+-...-.-+++|+..-. +.+.+...+..+.+
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTN 122 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHH
Confidence 9999987655433222223233445555433 34444444444443
No 95
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.62 E-value=1.4 Score=46.07 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=75.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH------hCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCC---------CCCH
Q 006661 32 AGLRVLVVDDDITCLRILEQMLR------RCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMP---------DMDG 94 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~------~~gy~V~-tas-dg~eALe~Lre~k~~pDLVIlDI~MP---------dmDG 94 (636)
..+|+=|+.|+...+.-+...++ +.||.|. .|. |...| +.+.+.. +++| || +..-
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~a-r~l~~~G--~~~v-----mPlg~pIGsg~Gi~~ 163 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLA-KRLEDAG--CAAV-----MPLGSPIGSGQGLLN 163 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHcC--CCEe-----CCCCcCCCCCCCCCC
Confidence 35677777766544333333332 3388877 444 55555 4444443 7877 66 1212
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl-----KPi~~eeLk~~Iq~vlr 151 (636)
.++++.|++..++|||+=..-...+.+.++++.||+..++ |.-++..+...+..++.
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 6788888766789999988889999999999999999865 44457777777776664
No 96
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.30 E-value=4.6 Score=36.11 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=57.4
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCC-CCC-CHHHHHHHHhcc-CCCcEEEEe
Q 006661 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGLE-MDLPVIMMS 113 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~M-Pdm-DG~ELLk~Ir~~-~~iPVIILS 113 (636)
+-++.-...+..+|++.||+|... .+.++..+.+++.+ ||+|.+...+ +.. ...++++.++.. ++++||+ -
T Consensus 11 ~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~-G 87 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV-G 87 (121)
T ss_dssp SSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE-E
T ss_pred cchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE-E
Confidence 344677889999999999999765 34567777777765 9999998843 333 345566666654 4555554 4
Q ss_pred cCCCHHHHHHHHH--cCCCeEEe
Q 006661 114 ADGRVSAVMRGIR--HGACDYLI 134 (636)
Q Consensus 114 a~~d~e~v~kAle--~GA~DYLl 134 (636)
+..-.......++ .|++..+.
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEE
T ss_pred CCchhcChHHHhccCcCcceecC
Confidence 4433333344454 45544443
No 97
>PRK00208 thiG thiazole synthase; Reviewed
Probab=90.09 E-value=2.8 Score=43.94 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=75.1
Q ss_pred CccEEEEEeCCHHHH-------HHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCC---------CCC
Q 006661 32 AGLRVLVVDDDITCL-------RILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMP---------DMD 93 (636)
Q Consensus 32 ~glRVLIVDDD~~~r-------e~L~~lL~~~gy~V~-tas-dg~eALe~Lre~k~~pDLVIlDI~MP---------dmD 93 (636)
..+|+=|+.|+...+ +..+.++ +.||.|. .|. |...|- .+.+.. +|+| || +..
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~-~~Gf~vlpyc~~d~~~ak-~l~~~G--~~~v-----mPlg~pIGsg~gi~ 162 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILV-KEGFVVLPYCTDDPVLAK-RLEEAG--CAAV-----MPLGAPIGSGLGLL 162 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHH-HHHHcC--CCEe-----CCCCcCCCCCCCCC
Confidence 357777777665333 3333333 3488877 444 555554 444443 7877 66 111
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl-----KPi~~eeLk~~Iq~vlr 151 (636)
-.++++.|++..++|||+=..-...+.+.+++++||+..++ |.-++..+...+..++.
T Consensus 163 ~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 163 NPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred CHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 16778888766789999988889999999999999999865 44567777777777765
No 98
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.65 E-value=0.97 Score=48.06 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=53.8
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE-ecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM-SADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 58 y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL-Sa~~d~e~v~kAle~GA~DYLlKP 136 (636)
.++..+.+..++-. ....-.+|++|..+-. .++... .-....+|++ ....+.+....|++.||.|||.+|
T Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P 72 (322)
T TIGR03815 2 VELDVAPDPEAARR----AWARAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLP 72 (322)
T ss_pred CceEEccCchhhhh----ccccCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCC
Confidence 45566666554422 2223578999864311 111121 1122335544 445678899999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006661 137 IREEELKNIWQHVV 150 (636)
Q Consensus 137 i~~eeLk~~Iq~vl 150 (636)
++..+|...+.++.
T Consensus 73 ~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 73 EAEGWLVELLADLD 86 (322)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999887763
No 99
>PRK15320 transcriptional activator SprB; Provisional
Probab=89.61 E-value=0.86 Score=46.40 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=96.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~--gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
+|+|-.|.-...-.+..++++. +..|.+|......|..++.. ||.+++=.--|...-+-+-......++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 5778888888888888888875 55678888888888888764 675554333454333322222223467789888
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHH-------------HHHHHHHHHhhccccc--ccc--cCCccc-------
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELK-------------NIWQHVVRKRWNENKE--HEN--SGSLEE------- 168 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk-------------~~Iq~vlrkk~~~~ke--~~~--s~sle~------- 168 (636)
+..-...+..-.--.|..+|++| +||. ++|-+...+-....-. ... ....++
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK----DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQ 155 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH----HHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhccc
Confidence 87655544333345688899887 3333 3343332211110000 000 000000
Q ss_pred ----ccccCCCchhHHHHHhhccCCcceeehhhhcccccc
Q 006661 169 ----TDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKE 204 (636)
Q Consensus 169 ----~~~~klt~rEie~lssv~eG~e~~~ka~~k~Is~Ke 204 (636)
.--..++.+|++++..+..|.....++....++.|+
T Consensus 156 ~~~~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KT 195 (251)
T PRK15320 156 YAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKT 195 (251)
T ss_pred eeeecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhh
Confidence 112357889999999999998888888777766553
No 100
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=89.46 E-value=3.1 Score=49.67 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=71.3
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006661 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (636)
Q Consensus 34 lRVLIVDDD~-~-----~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir-~~~~ 106 (636)
|+|+||+++. . -.+.|..-|++.||+|..+.+..+++..++.. .....|++|+.- . ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788887772 1 25566777788899999999999999988843 468899998532 2 245777776 4578
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVV 150 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi-~~eeLk~~Iq~vl 150 (636)
+||+++........+-...-.-+++|+-.-- +.+.+...+..+.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~ 121 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTT 121 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHH
Confidence 9999987654333222222222344444332 3444434344443
No 101
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.02 E-value=9.9 Score=36.30 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=74.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc-CCCcEEEEe
Q 006661 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-MDLPVIMMS 113 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~---tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mD-G~ELLk~Ir~~-~~iPVIILS 113 (636)
|-|..-...+..+|+..||+|+ .....++.++.+.+.. +|+|-+...|.. +. --++.+.+++. ..-++|++-
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 4455667788999999999987 4567888888888765 999998887753 22 23355566542 222445555
Q ss_pred cC-----CCHH-HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 114 AD-----GRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 114 a~-----~d~e-~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
+. .+.. ...++.++|++..+...-..+++...+++.+
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 53 2222 2456788998888887778888888777654
No 102
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.36 E-value=12 Score=37.66 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=57.4
Q ss_pred HHHHHHHh-CCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEecCCCH
Q 006661 48 ILEQMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRV 118 (636)
Q Consensus 48 ~L~~lL~~-~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~-------MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~ 118 (636)
.+.+.+++ .+..+ ..+.+.+++..... . .+|+|.+... ......++++++++...++|||....-.+.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~~-~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQK-L--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHHH-c--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCH
Confidence 33344444 44444 45667777755443 2 3788765321 122335788888876668999998888889
Q ss_pred HHHHHHHHcCCCeEEeC
Q 006661 119 SAVMRGIRHGACDYLIK 135 (636)
Q Consensus 119 e~v~kAle~GA~DYLlK 135 (636)
+.+.++++.||+..+.=
T Consensus 186 ~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 186 EQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999987664
No 103
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=85.63 E-value=8.7 Score=38.40 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=68.5
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006661 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (636)
Q Consensus 33 glRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~MPdm--DG~ELLk~Ir~ 103 (636)
+-||++. |.|..=...+..+|+..||+|+.. ...++.++.+++.+ ||+|-+-..|... +.-++++.+++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 5688888 888888999999999999998743 35678888888765 9999998877652 23456666765
Q ss_pred cC---CCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 104 EM---DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 104 ~~---~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.. +++|++=-..-..+ -+-..||+.|..-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 43 45555543333332 3456699888763
No 104
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=83.80 E-value=13 Score=37.98 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=71.1
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006661 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~lL~~~gy~V~tas---dg~eALe~Lre~k~~pDLVIlDI~MPd-mD-G~ELLk~Ir 102 (636)
..-+|++. |.|..=...+..+|+..||+|+... ..++.++.+.+.+ ||+|.+-..|+. +. --++++.|+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 45678888 8888889999999999999998543 5778888888766 999999988764 32 344666675
Q ss_pred cc-CCCcEEEEecCCCHHHHHH---HHHcCCCeEEeCC
Q 006661 103 LE-MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKP 136 (636)
Q Consensus 103 ~~-~~iPVIILSa~~d~e~v~k---Ale~GA~DYLlKP 136 (636)
+. .+++|++=-+--+.+...+ +-..||+.|-.-.
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 43 3566555444334433322 2347998886643
No 105
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.54 E-value=8.4 Score=34.04 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=58.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
+||||-..+.....++..+++.|+..... .........+...-...|+||+=++.-.=+-...+++..+..++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999988777 222222222332223479998866665556666666666667899988
Q ss_pred EecCCCHHHHHHHH
Q 006661 112 MSADGRVSAVMRGI 125 (636)
Q Consensus 112 LSa~~d~e~v~kAl 125 (636)
.-... ...+.+++
T Consensus 81 ~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 81 SRSRG-VSSLERAL 93 (97)
T ss_pred ECCCC-HHHHHHHH
Confidence 65333 33344443
No 106
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.23 E-value=30 Score=30.67 Aligned_cols=105 Identities=18% Similarity=0.304 Sum_probs=58.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
|||.||-=-..-+..+..++.. .++++. .++...+..+.+.+.. ... ++.| ++.+-...++-+++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~-~~~~-----------~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIP-VYTD-----------LEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSE-EESS-----------HHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-ccc-chhH-----------HHHHHHhhcCCEEE
Confidence 4566666655555566666655 344543 3443333333332221 133 3333 22221112333333
Q ss_pred EecC--CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 112 MSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 112 LSa~--~d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
++.. .-.+.+.++++.|..=|+-||+ +.+++.++++.+-+
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3333 3467788999999999999997 88898888876644
No 107
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.89 E-value=17 Score=35.69 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.1
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--------CHHHHHHHHhccCC-CcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPdm--------DG~ELLk~Ir~~~~-iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
.+.+..++.+.... .+|.|.+.--.|.. .|++.++.+++... +||++..+- +.+.+.+++++||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566676665542 38999886555432 35888888865544 898887666 5678889999999998
Q ss_pred Ee
Q 006661 133 LI 134 (636)
Q Consensus 133 Ll 134 (636)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 75
No 108
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.87 E-value=18 Score=36.47 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=52.1
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 61 TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 61 ~tasdg~eALe~Lre~k~~pDLVIlDI~-------MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
..+.+.+++...... .+|+|.+..+ ......+++++.++...++||+....-.+.+.+.++++.||+..+
T Consensus 128 v~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 128 ADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred EECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 456777777655543 3888765321 112335788888876668999998888899999999999999887
Q ss_pred eC
Q 006661 134 IK 135 (636)
Q Consensus 134 lK 135 (636)
.-
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 64
No 109
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=81.75 E-value=30 Score=32.87 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=71.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc--CCCcEEEE
Q 006661 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE--MDLPVIMM 112 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~---tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG-~ELLk~Ir~~--~~iPVIIL 112 (636)
|-|..-...+..+|+..||+|+ .....++.++.+.+.+ +|+|.+...|.. +.. -++.+.+++. .+++|++
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv- 86 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV- 86 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE-
Confidence 4445667788899999999987 4567888888888765 999998877754 333 3455666543 2555443
Q ss_pred ecC-----CC-HHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006661 113 SAD-----GR-VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (636)
Q Consensus 113 Sa~-----~d-~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq 147 (636)
-+. .+ .+...+..++|++..+...-+++++...++
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 332 12 334566788999988887777887766553
No 110
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.19 E-value=39 Score=32.84 Aligned_cols=117 Identities=15% Similarity=0.006 Sum_probs=75.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCC-CC-CHHHHHHHHh
Q 006661 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMP-DM-DGFKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~lL~~~gy~V~---tasdg~eALe~Lre~k~~pDLVIlDI~MP-dm-DG~ELLk~Ir 102 (636)
...||++. |-|..-.+.+.+.|+..||+|. .....+|+.+..-+.. .|+|.+-..-. .+ ..-++.+.++
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEeccchHHHHHHHHHHHHH
Confidence 34566664 7888888999999999999987 4678899998876544 78776654211 11 1223444444
Q ss_pred ccCCCcEE-EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 103 LEMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 103 ~~~~iPVI-ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
+.---.|+ +.-+.-..+...+..++|++.++.--....+...-+.+.+
T Consensus 89 e~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 89 EAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 43222233 4455555556667778999999887677777665554443
No 111
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=79.33 E-value=32 Score=36.48 Aligned_cols=115 Identities=21% Similarity=0.286 Sum_probs=76.0
Q ss_pred CccEEEEEeCC-------HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCC--H---HHH
Q 006661 32 AGLRVLVVDDD-------ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMD--G---FKL 97 (636)
Q Consensus 32 ~glRVLIVDDD-------~~~re~L~~lL~~~gy~V~tas--dg~eALe~Lre~k~~pDLVIlDI~MPdmD--G---~EL 97 (636)
..+|+=|+-|+ ....+.-+.++ +.||.|..+. |..-|-+ +.+. .+ -+++-+--|-.+ | -..
T Consensus 106 ~wIKLEVi~D~~~LlPD~~etl~Aae~Lv-~eGF~VlPY~~~D~v~a~r-Led~-Gc--~aVMPlgsPIGSg~Gl~n~~~ 180 (267)
T CHL00162 106 NFVKLEVISDPKYLLPDPIGTLKAAEFLV-KKGFTVLPYINADPMLAKH-LEDI-GC--ATVMPLGSPIGSGQGLQNLLN 180 (267)
T ss_pred CeEEEEEeCCCcccCCChHHHHHHHHHHH-HCCCEEeecCCCCHHHHHH-HHHc-CC--eEEeeccCcccCCCCCCCHHH
Confidence 35676666433 23344444444 5599987444 4444433 3332 12 234444444333 2 356
Q ss_pred HHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHH
Q 006661 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVR 151 (636)
Q Consensus 98 Lk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL-----lKPi~~eeLk~~Iq~vlr 151 (636)
++.|++..++|||+=.+-...+++.+|++.|+++.+ .|--++.++...+++++.
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 777777889999999999999999999999999865 466788999999988875
No 112
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=78.10 E-value=21 Score=32.64 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cCCCcEEEEecCCCHH
Q 006661 44 TCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVIMMSADGRVS 119 (636)
Q Consensus 44 ~~re~L~~lL~~~gy~V~t--asdg~eALe~Lre~k~~pDLVIlDI~MPdm-DG~ELLk~Ir~-~~~iPVIILSa~~d~e 119 (636)
.-+..+..+|++.++.+.. ....++.++.+... ..||+|.+.+..... ...++++.+|+ .++++||+--.+...
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~- 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF- 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh-
Confidence 3456788889888877653 34556666766552 249999999855544 35667777765 456666664333322
Q ss_pred HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 120 AVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 120 ~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
.....+..-..||+.+--...-+...++++.
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 1222244556688888666666666666643
No 113
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.24 E-value=26 Score=37.57 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=58.0
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 36 VLVVDDDITCLRILEQMLRR----CL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
|||=|.|....-.+...+++ .. ...+.+.+.+++.+.+.. .+|+|.+| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 66666665444333443332 21 245688999999999864 38999999 4432222223333332333346
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEE
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYL 133 (636)
|..|+--+.+.+.+..+.|++.+-
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 778888899999898899987543
No 114
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.95 E-value=52 Score=35.19 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=62.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CC
Q 006661 36 VLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--DL 107 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~------gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~--~i 107 (636)
|||-|+|..+. .+...+... ....+.+.+.+++.+.+... +|+|.+|=..|+ +--++.+.++... .-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~ag---aDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAG---ADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---cCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 88888887665 566665542 12345889999999998743 799999965433 2223333343211 23
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
..|..|+--+.+.+.+..+.|++.+-+
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 456678888888998988999876543
No 115
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=74.66 E-value=23 Score=37.83 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=59.9
Q ss_pred EEEEeCCHHHHH---HHHHHHHh----C--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006661 36 VLVVDDDITCLR---ILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (636)
Q Consensus 36 VLIVDDD~~~re---~L~~lL~~----~--gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~ 106 (636)
|||-|+|..... .++..+.. . ....+.+.+.++|.+.+.. .+|+|++| +|+-.+-.+.++.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 677777755543 34444332 1 2234578899999998864 38999999 4544444445555542222
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
-.+|-.|+--+.+.+.+..+.|++-+
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 33566888888888888888888764
No 116
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=74.32 E-value=16 Score=34.75 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=71.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH-----HHHHhccCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL-----LEHIGLEMD 106 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~EL-----Lk~Ir~~~~ 106 (636)
+|-|.+.||.+.........+|...+.+|+.-.... .+-... +|++|+.+-.+-.+-..+ .+.+.. -+
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp~~h--YD~~Ll~vavtfr~n~tm~~~~l~~Al~m-td 82 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALPPAH--YDMMLLGVAVTFRENLTMQHERLAKALSM-TD 82 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccChhh--hceeeecccccccCCchHHHHHHHHHHhh-hc
Confidence 567899999999999999999999888887543322 222222 899999987765443333 333321 12
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~ 145 (636)
-||+--.....-.+.+....|+.+.|+||++...|...
T Consensus 83 -~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 83 -FVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred -ceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 23332222333445677789999999999999888763
No 117
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=73.89 E-value=22 Score=35.62 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=64.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc
Q 006661 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE 104 (636)
Q Consensus 34 lRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG-~ELLk~Ir~~ 104 (636)
-+|++. |.|..=...+..+|+..||+|+. -...++.++.+++.+ ||+|.+-..|+. +.. -++++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 456554 56677788899999999999984 346678888888766 999999887764 222 3456666644
Q ss_pred --C-CCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 105 --M-DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 105 --~-~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
. +++|+ +.+..-.. .-+-+.||+.|-.-
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~d 193 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGEN 193 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeCC
Confidence 2 34544 44433222 23456799988653
No 118
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.44 E-value=18 Score=40.89 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=65.0
Q ss_pred CCCCCCCcccccccCC-CCCCCccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 12 GGSGYGSSRAADVAVP-DQFPAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 12 gG~~~~s~~~~d~~~~-d~fP~glRVLIVDDD~~~---re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
|.+|+|..+++--... .....|.+|++++-|+-- .+.++.+....+..+..+.+..++.+.++.. .+|+||+|.
T Consensus 230 GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDT 307 (432)
T PRK12724 230 GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDT 307 (432)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeC
Confidence 4456666443332211 123457799999988622 2334444444466666666667777777643 489999996
Q ss_pred --CCC-CCCHHHHHHHH-hcc----CCCcEEEEecCCCHHHHHHHHH----cCCCeE-EeC
Q 006661 88 --HMP-DMDGFKLLEHI-GLE----MDLPVIMMSADGRVSAVMRGIR----HGACDY-LIK 135 (636)
Q Consensus 88 --~MP-dmDG~ELLk~I-r~~----~~iPVIILSa~~d~e~v~kAle----~GA~DY-LlK 135 (636)
.++ +.+-++-+..+ +.. +.-.++++++....+...++++ .|.+.. ++|
T Consensus 308 aGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 308 AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 222 12223323332 211 2235677787776655555443 455554 444
No 119
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=73.28 E-value=35 Score=34.19 Aligned_cols=94 Identities=7% Similarity=0.129 Sum_probs=65.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 35 RVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
++.|+.+++..++.+++++..+| |+|....+.+++++-++.....|.|+..+.+..+ .++-++..-.. .-|++++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LIv 109 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLIV 109 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEEE
Confidence 68999999999999999999985 7899999999999988743234788888888766 55444432122 4566665
Q ss_pred ec-CCCHHHHHHHHHcCCCeEEeCC
Q 006661 113 SA-DGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 113 Sa-~~d~e~v~kAle~GA~DYLlKP 136 (636)
-+ ..-.. +.++ .+||.+-+
T Consensus 110 vGg~gvp~---evye--~aDynlgv 129 (176)
T PRK03958 110 VGAEKVPR---EVYE--LADWNVAV 129 (176)
T ss_pred EcCCCCCH---HHHh--hCCEEecc
Confidence 54 33233 3332 35777643
No 120
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=72.32 E-value=36 Score=35.74 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=68.5
Q ss_pred HHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH
Q 006661 48 ILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (636)
Q Consensus 48 ~L~~lL~~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~iPVIILSa~~d~e~v~k 123 (636)
.|++.|..-.. .+........+.+++.... ||.|++|.+-...|--++...++. ...++.++=....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAG--FDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 45666665322 2223334456667776544 999999998887877777666643 34566666667778899999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006661 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (636)
Q Consensus 124 Ale~GA~DYLlKPi-~~eeLk~~Iq~v 149 (636)
+++.||.+.+.--+ +.++.+.+++.+
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999877554 577777766654
No 121
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=71.58 E-value=42 Score=35.57 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH
Q 006661 48 ILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (636)
Q Consensus 48 ~L~~lL~~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~iPVIILSa~~d~e~v~k 123 (636)
.|++.|..-.. ..........+.+++.... ||.|++|.+-...|--++...++. ...++.++=....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G--fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcC--CCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 35666655332 2223334456667666543 999999998887777666666642 34455566566778889999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006661 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (636)
Q Consensus 124 Ale~GA~DYLlKPi-~~eeLk~~Iq~v 149 (636)
+++.||.+.+.--+ +.++.+.+++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999988665 567777666554
No 122
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.36 E-value=17 Score=37.60 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=42.7
Q ss_pred HHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d------~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
++++++.++...++|+++|+-... ...+.++.++|+++.+.-.+..+++...++.+.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 566777777656889988887554 666888899999999997777777766666553
No 123
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=71.26 E-value=45 Score=34.85 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=67.6
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHHH
Q 006661 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (636)
Q Consensus 49 L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~iPVIILSa~~d~e~v~kA 124 (636)
|++.|..-. +.+........+.+++.... ||.|++|.+-..+|--++...++. ...++.++=....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG--FDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 22333344456667776544 999999998888877776666643 345566666677788999999
Q ss_pred HHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006661 125 IRHGACDYLIKPI-REEELKNIWQHV 149 (636)
Q Consensus 125 le~GA~DYLlKPi-~~eeLk~~Iq~v 149 (636)
++.||.+.+.-=+ +.++.+++++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999987555 577777666543
No 124
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=71.13 E-value=57 Score=32.72 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=49.7
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPd-------mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+.+.+++.. +.+. ..|.|+++-.-++ ...+++++++++..++||++.-+-...+.+.+++..||+...+
T Consensus 108 ~v~~~~~~~~-~~~~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 108 TVTSVEEARK-AEAA--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred eCCCHHHHHH-HHHc--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 4445555544 3333 3788887642111 2457788888766689999988888878899999999998776
Q ss_pred C
Q 006661 135 K 135 (636)
Q Consensus 135 K 135 (636)
-
T Consensus 185 g 185 (236)
T cd04730 185 G 185 (236)
T ss_pred c
Confidence 4
No 125
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.45 E-value=51 Score=33.17 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~MPdm-DG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+..+.+.+.. ++ ++++|+.--++ .| +++++++++..++|+|.-..-.+.+.+.++++.||++.++
T Consensus 146 ~~~~~~~~~~~~g--~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEELG--LEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3344555555433 56 77788854332 12 6888888776789999988888999999999999999876
No 126
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=69.69 E-value=56 Score=39.39 Aligned_cols=116 Identities=10% Similarity=-0.034 Sum_probs=75.7
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHhcc
Q 006661 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIGLE 104 (636)
Q Consensus 34 lRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd-m-DG~ELLk~Ir~~ 104 (636)
.+|++. |.+..-...+..+|...||+|.. ..+.+++.+...+.. +|+|++-..+.. + ..-++++.|++.
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 456554 45566677788888888999963 346788888887755 888877554432 2 233566666654
Q ss_pred CCCcE-EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 105 MDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 105 ~~iPV-IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
..-.| |++.+..-.+......+.|+++|+..-.+..++...+++.+.
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 21123 445544233334566789999999988888888777766654
No 127
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=69.27 E-value=7.3 Score=39.43 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=52.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCC--HHHHHHHHhccCCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMD--GFKLLEHIGLEMDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~--MPdmD--G~ELLk~Ir~~~~iP 108 (636)
+++||+||....+--.|..+|++.+.+|.+..+....++.++..+ ||.|++.=- -|..- ..+++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~--pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK--PDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC--CCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 468999999999999999999999988887766543344455444 899988531 22212 34455554 35678
Q ss_pred EEEEe
Q 006661 109 VIMMS 113 (636)
Q Consensus 109 VIILS 113 (636)
|+=+-
T Consensus 77 iLGVC 81 (191)
T COG0512 77 ILGVC 81 (191)
T ss_pred EEEEC
Confidence 87543
No 128
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.94 E-value=36 Score=36.19 Aligned_cols=91 Identities=11% Similarity=0.205 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-h---cc
Q 006661 36 VLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-G---LE 104 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~gy---~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I-r---~~ 104 (636)
|||=|.|......+...+++ ..+ ..+.+.+.+||++.++. .+|+|.+|= |+ ++.++++ + ..
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~-~e~l~~~v~~~~~~ 226 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MS-VEEIKEVVAYRNAN 226 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CC-HHHHHHHHHHhhcc
Confidence 66666665555555555543 232 23589999999998864 389999884 23 3333332 2 11
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
..-..|..++.-+.+.+.+..+.|++.+.+
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 122356678778999999999999986543
No 129
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=68.79 E-value=25 Score=35.63 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=47.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEeCC
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVH 88 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasdg~eALe~Lre~k--~~pDLVIlDI~ 88 (636)
...|.+-+|.-||-++...+..++.+++.++ .|. ...++.+.+..+.... ..||+|++|..
T Consensus 65 ~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 65 EALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred HhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 3456678999999999999999999999876 343 5678888888776542 35999999984
No 130
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.60 E-value=43 Score=36.00 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=59.3
Q ss_pred HHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-----CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHH
Q 006661 50 EQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (636)
Q Consensus 50 ~~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~-----MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~k 123 (636)
-..++..+..| ..+.+.++|..+.+. .+|.|++.-. .....-++++++++...++|||.--.-.+.+.+.+
T Consensus 102 i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~ 178 (307)
T TIGR03151 102 IPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAA 178 (307)
T ss_pred HHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHH
Confidence 34444445544 367788887666543 3898887442 12233588899987666899999888889999999
Q ss_pred HHHcCCCeEEeC
Q 006661 124 GIRHGACDYLIK 135 (636)
Q Consensus 124 Ale~GA~DYLlK 135 (636)
++..||+...+=
T Consensus 179 al~~GA~gV~iG 190 (307)
T TIGR03151 179 AFALGAEAVQMG 190 (307)
T ss_pred HHHcCCCEeecc
Confidence 999999987664
No 131
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=68.02 E-value=5.1 Score=38.24 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=49.7
Q ss_pred cCCCCCCCcccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHH----------hCCCeEEEE----------CCHHHHH
Q 006661 11 SGGSGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLR----------RCLYNVTTC----------SQAAVAL 70 (636)
Q Consensus 11 ~gG~~~~s~~~~d~~~~d~fP~glRVLIVDDD~~~re~L~~lL~----------~~gy~V~ta----------sdg~eAL 70 (636)
+|..|+|...........-.+.+.||++++-|+.....+..++. ..+..+... ....+++
T Consensus 5 ~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (148)
T cd03114 5 TGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATPEVI 84 (148)
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHHHHH
Confidence 34456666554433333334567889888866422221111111 112222221 2235566
Q ss_pred HHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006661 71 DILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (636)
Q Consensus 71 e~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~ 115 (636)
+.++.. .+|+||+|. ++..- .....+ ...+..+|+++..
T Consensus 85 ~~~~~~--~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 85 RVLDAA--GFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHhc--CCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 666553 499999998 55442 222333 2345567766665
No 132
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=67.53 E-value=49 Score=33.44 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC----e---------EEEECCHHHHHHHHHHcC-CCceEEEEeCC-CCCCCHHHH
Q 006661 35 RVLVVDDDITCLRILEQMLRRC--LY----N---------VTTCSQAAVALDILRERK-GCFDVVLSDVH-MPDMDGFKL 97 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~--gy----~---------V~tasdg~eALe~Lre~k-~~pDLVIlDI~-MPdmDG~EL 97 (636)
+-.||..-+..++.+++++.-+ |+ + |..+.+.++|++.+++.. ..|-+|-+|.. -|+.-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5678888888999999998754 22 1 789999999999888632 34899999998 455556666
Q ss_pred HHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCH
Q 006661 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (636)
Q Consensus 98 Lk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~ 139 (636)
+++.-...+-|++++.+...- ...+.+ ..+||++.|+.-
T Consensus 124 lr~~l~~~~~P~LllFGTGwG-L~~ev~--~~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWG-LAPEVM--EQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT----HHHH--TT-SEEB--TTT
T ss_pred HHHHHhccCCeEEEEecCCCC-CCHHHH--HhcCeeEccccc
Confidence 655434456677777555432 122222 357999999853
No 133
>PLN02591 tryptophan synthase
Probab=66.91 E-value=19 Score=37.71 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=45.9
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 93 DGFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVIILSa~~d------~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
+.|++++++|...++|+|+|+=+.. .....+|.++|+++.|+-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 4578888888667899998885543 345778889999999999999998887776653
No 134
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=66.59 E-value=69 Score=35.10 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=73.5
Q ss_pred ccEEEEEeCCHHHHH-------HHHHHHHhCCCeE-E-EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHH
Q 006661 33 GLRVLVVDDDITCLR-------ILEQMLRRCLYNV-T-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (636)
Q Consensus 33 glRVLIVDDD~~~re-------~L~~lL~~~gy~V-~-tasdg~eALe~Lre~k~~pDLVIlDI~MP-----dmDG~ELL 98 (636)
.+|+=|+.|+..... ..+.++ +.||.| . ++.|...|-++ .+.. + +.++-+--| +..--+.+
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~-~~Gf~v~~yc~~d~~~a~~l-~~~g--~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILV-KEGFQVMVYCSDDPIAAKRL-EDAG--A-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHH-HhcC--C-EEEeeccccccCCCCCCCHHHH
Confidence 466666666554433 333333 338887 4 44555555444 4333 4 333332111 12234567
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006661 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (636)
Q Consensus 99 k~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl-----KPi~~eeLk~~Iq~vlr 151 (636)
+.+.+..++|||+=.+-...+++.+|+++|+++.|+ |--++-.+.+++++++.
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 777666789999999999999999999999999764 55688888888888875
No 135
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.68 E-value=21 Score=37.58 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=43.8
Q ss_pred HHHHHHHHh-ccCCCcEEEEecCC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 94 GFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 94 G~ELLk~Ir-~~~~iPVIILSa~~------d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
.++++++++ ...++|+|+|+=.. -.....++.++|+++.|+-.+..+|....+..+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 477788887 55789999888443 345678899999999999888888887777665
No 136
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=65.05 E-value=72 Score=33.24 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=66.4
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHHH
Q 006661 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (636)
Q Consensus 49 L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~iPVIILSa~~d~e~v~kA 124 (636)
++..|+.-. +.+.........++++.... +|.|++|++-...|--++...++. .....+++=....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g--~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG--FDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 23334444456677776544 999999998777777777766643 234456665566677789999
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHHH
Q 006661 125 IRHGACDYLI-KPIREEELKNIWQHV 149 (636)
Q Consensus 125 le~GA~DYLl-KPi~~eeLk~~Iq~v 149 (636)
++.||++.+. |--+.++.+++++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999755 456788887777654
No 137
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=64.63 E-value=1.3e+02 Score=31.62 Aligned_cols=90 Identities=16% Similarity=0.030 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeC---CCCCCCHHHHHHHHhc-cC-CCcEEEEecC
Q 006661 42 DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIGL-EM-DLPVIMMSAD 115 (636)
Q Consensus 42 D~~~re~L~~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI---~MPdmDG~ELLk~Ir~-~~-~iPVIILSa~ 115 (636)
++..++.+.....+.|..+ +.+.+.+|+...... .+|+|-+.- .....| ++...++.. .+ ..++|..++-
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI 220 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGI 220 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCC
Confidence 3334444444445557664 477888888665532 378776531 112223 556666633 33 3588999999
Q ss_pred CCHHHHHHHHHcCCCeEEeC
Q 006661 116 GRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 116 ~d~e~v~kAle~GA~DYLlK 135 (636)
.+.+.+.++.++||+.+++-
T Consensus 221 ~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999997653
No 138
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=64.33 E-value=27 Score=34.68 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=46.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CH-HHHHHHHh
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDM--DG-FKLLEHIG 102 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~---V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdm--DG-~ELLk~Ir 102 (636)
-+|..||-++.....+++-++..+.. .+.+.+...++..+......+|+|++|= |-. .. .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 37999999999999999999987632 3467788888877654445699999993 432 22 45666664
No 139
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=64.32 E-value=25 Score=36.84 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=44.8
Q ss_pred CHHHHHHHHhcc-CCCcEEEEecCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 93 DGFKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 93 DG~ELLk~Ir~~-~~iPVIILSa~~d------~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
+.+++++.+++. .++|+++|+-+.. ...+.++.++|+++.+.-....++....+..+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 356778888755 6899888887765 67788999999999999888888877666554
No 140
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=62.52 E-value=47 Score=35.58 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=58.1
Q ss_pred EEEEeCCHHHHH-------HHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006661 36 VLVVDDDITCLR-------ILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (636)
Q Consensus 36 VLIVDDD~~~re-------~L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~ 106 (636)
|||=|.|....- .++..=+... ...+.+.+.++|.+.++.. +|+|++| +|+-.+--++.+.++....
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~ag---aDiI~LD-n~~~e~l~~av~~~~~~~~ 235 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQ---PDVLQLD-KFSPQQATEIAQIAPSLAP 235 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHhhccCC
Confidence 566666654433 3333222222 2445788999999998643 8999999 4443333334444432222
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
-.++-.|+--+.+.+.+..+.|++-+.+
T Consensus 236 ~~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 236 HCTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred CeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 3456678888888888888889775543
No 141
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.12 E-value=34 Score=35.29 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MPdm-DG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.+.++.+.+.. .-.+|++|+..-++ .| +++++++.+..++|||+-..-.+.+.+.++++.|++..++=
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 44455544432 23799999976543 33 66788887667899999888899999999999999998773
No 142
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=61.99 E-value=57 Score=31.15 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=48.9
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPd--------mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
.+.+..++.+.... .+|.|+++--.|. ..|++.++++++..++||++..+- +.+.+.++++.|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 34556666655442 3899988654332 346788888876677899888766 46788899999999875
Q ss_pred eC
Q 006661 134 IK 135 (636)
Q Consensus 134 lK 135 (636)
.=
T Consensus 177 ~g 178 (196)
T cd00564 177 VI 178 (196)
T ss_pred Ee
Confidence 54
No 143
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=61.75 E-value=1.6e+02 Score=29.43 Aligned_cols=78 Identities=14% Similarity=0.000 Sum_probs=51.9
Q ss_pred hCCCeE-EEECCHHHHHHHHHHcCCCceEEEEe-CCC-CCCCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHHcCC
Q 006661 55 RCLYNV-TTCSQAAVALDILRERKGCFDVVLSD-VHM-PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGA 129 (636)
Q Consensus 55 ~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlD-I~M-PdmDG~ELLk~Ir~~--~~iPVIILSa~~d~e~v~kAle~GA 129 (636)
..+..+ ..+.+.+++.+..+. .+|.+.+- ... ....+++++++++.. .++|||...+-.+.+.+.++++.||
T Consensus 119 ~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga 195 (217)
T cd00331 119 ELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGA 195 (217)
T ss_pred HcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCC
Confidence 345554 356677776555543 27877554 110 012345777887654 4689999999999999999999999
Q ss_pred CeEEeC
Q 006661 130 CDYLIK 135 (636)
Q Consensus 130 ~DYLlK 135 (636)
++.++-
T Consensus 196 ~gvivG 201 (217)
T cd00331 196 DAVLIG 201 (217)
T ss_pred CEEEEC
Confidence 998653
No 144
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=61.50 E-value=52 Score=35.37 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=61.6
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeC---------------------------------CC--CCCCHHHHHHHHhccC
Q 006661 61 TTCSQAAVALDILRERKGCFDVVLSDV---------------------------------HM--PDMDGFKLLEHIGLEM 105 (636)
Q Consensus 61 ~tasdg~eALe~Lre~k~~pDLVIlDI---------------------------------~M--PdmDG~ELLk~Ir~~~ 105 (636)
.-|++.+||+...+.. +|+|=+=. .. ....++++++++.+..
T Consensus 117 AD~stleEal~a~~~G---ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 117 CGARNLGEALRRISEG---AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred ccCCCHHHHHHHHHCC---CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 4678888888887653 78876654 00 1234788999997767
Q ss_pred CCcEE--EEecCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHH
Q 006661 106 DLPVI--MMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (636)
Q Consensus 106 ~iPVI--ILSa~~d~e~v~kAle~GA~DYLlKP-----i~~eeLk~~Iq~vlr 151 (636)
.+||| ....-.+.+.+.++++.||+.+++=- -++.+....+..++.
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 79997 56666689999999999999976542 345555555555444
No 145
>smart00426 TEA TEA domain.
Probab=61.48 E-value=6.2 Score=33.63 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=29.9
Q ss_pred eecHHHHHHHHHHHHHhccCcccHHHHH-------------HHh-cCCCC--CHHHHHHHHHH
Q 006661 224 VWSVELHQQFVSAVNQLGIDKAVPKRIL-------------ELM-NVPGL--TRENVASHLQK 270 (636)
Q Consensus 224 vWt~ELH~kFv~AVnqLGidKAvPKkIL-------------elM-nVpgL--TrenVASHLQK 270 (636)
+|..+|...|++|+..+--...-+-++. +++ ...|. |+.+|+||+|.
T Consensus 5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 7999999999999988752211111222 222 23454 56889999884
No 146
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.56 E-value=38 Score=38.36 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCCCCcccccccCCCCCCCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEeC
Q 006661 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (636)
Q Consensus 14 ~~~~s~~~~d~~~~d~fP~glRVLIVDDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k--~~pDLVIlDI 87 (636)
.|.|..++.-.....-...+.+|++++-|+- ..+.++.+-...+..+..+.+..+..+.+.... ..+|+||+|.
T Consensus 250 tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 3555544433222222345678999988864 344455554555777777777666555554332 1489999996
No 147
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=60.16 E-value=55 Score=35.24 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=44.8
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006661 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVI--ILSa~~d~e~v~kAle~GA~DYLl-----KPi~~eeLk~~Iq~vlrk 152 (636)
-++++++++.+...+||| ....-.+.+.+..++++||+.+++ |.-++.+....+..++.+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 488999999776789998 566666899999999999999754 434566666655555543
No 148
>PRK12704 phosphodiesterase; Provisional
Probab=59.59 E-value=11 Score=43.49 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=39.5
Q ss_pred cEEEEecCCCHH--HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 108 PVIMMSADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 108 PVIILSa~~d~e--~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.+|++|+++... .+..+++.++.|+.+||++.+++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 489999999876 889999999999999999999998888776653
No 149
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=59.38 E-value=30 Score=36.47 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=44.8
Q ss_pred CHHHHHHHHhccCCCcEEEEecCC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVIILSa~~------d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
+.+++++++|...++|+|+||=+. -.....+|.++|+++.++-.+..+|....++.+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 357888888877789998888554 345688899999999999888888877666555
No 150
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.77 E-value=1e+02 Score=35.15 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEC------CHHHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 006661 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 42 D~~~re~L~~lL~~~g-y~V~tas------dg~eALe~Lre~k~~pDLVIlDI~MPdmD-G~ELLk~Ir~-~~~iPVIIL 112 (636)
.|.-+..|...|++.| ++|.... +.++..+.+++.. ||+|.+-..-+... ..++++.+++ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~--pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHC--PDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcC--cCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4677889999998889 5776542 2334445566544 99999977655432 4466777764 467766664
Q ss_pred ecCCCHHHHHHHHH-cCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIR-HGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 113 Sa~~d~e~v~kAle-~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
-.+... ...++++ ....||++.--..+.+.++++.+..+
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g 138 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALENH 138 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcC
Confidence 433332 2234453 45678999987778888888776443
No 151
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=57.52 E-value=84 Score=36.19 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=55.6
Q ss_pred CccEEEEEeC---C-HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeC--------------CCC
Q 006661 32 AGLRVLVVDD---D-ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDV--------------HMP 90 (636)
Q Consensus 32 ~glRVLIVDD---D-~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI--------------~MP 90 (636)
.|..++++|- + ....+.++.+-+.. ...|. .+.+.++|..++.. ..|.|.+.+ -.|
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCC
Confidence 3566666664 2 33233344333332 22332 35556666655543 267775443 123
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 91 dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..+-+.-+.++....++|||.=..-.....+.+|+.+||+....=
T Consensus 329 ~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 329 QASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 222222222222345688887667788899999999999987664
No 152
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.36 E-value=40 Score=35.72 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=41.1
Q ss_pred CCCCCcccccccCCCCCCCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHc--CCCceEEEEeC
Q 006661 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDV 87 (636)
Q Consensus 14 ~~~~s~~~~d~~~~d~fP~glRVLIVDDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lre~--k~~pDLVIlDI 87 (636)
.|.|....+......-...+.+|.+++-|.. ....++......++.+..+.+..+..+.++.. ...+|+||+|.
T Consensus 84 ~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt 162 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 162 (270)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4455544444322221234567888877643 44445555555678877766664443333221 12489999996
No 153
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=57.36 E-value=1.6e+02 Score=32.35 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=63.5
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCC--H
Q 006661 35 RVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (636)
Q Consensus 35 RVLIVDD----D~~~re~L~~lL~~~g-y~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MP-----------dmD--G 94 (636)
.++++|- .....+.++.+-+.+. ..|. .+.+.++|..+++. .+|.|..-+.=. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 6777753 2334444444433332 2232 47788888877753 378876432111 112 4
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+..+..+.+..++|||.-..-.....+.+|+..||+....=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 65677776556799999888899999999999999987664
No 154
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=57.29 E-value=82 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=16.3
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEE
Q 006661 38 VVDDDITCLRILEQMLRRCLYNVTTC 63 (636)
Q Consensus 38 IVDDD~~~re~L~~lL~~~gy~V~ta 63 (636)
+-|.+......+.+.|.+.||.+...
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT 32 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVAT 32 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEc
Confidence 33555555556666666778888644
No 155
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=57.28 E-value=1.3e+02 Score=34.88 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=67.1
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCC--------------CC
Q 006661 32 AGLRVLVVDDDI----TCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MP 90 (636)
Q Consensus 32 ~glRVLIVDDD~----~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~--------------MP 90 (636)
.|..|+++|--. ...+.++.+=+.+ +..|. .+.+.++|..+++. ..|.|.+-++ .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 466788887532 2223333333333 23443 57888888888764 3798876431 12
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 91 dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
...-+..+..+....++|||.=..-.....+.+|+.+||+....=
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 334555666665556799999999999999999999999987664
No 156
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.17 E-value=1.2e+02 Score=31.07 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=56.3
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCC-CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcC
Q 006661 51 QMLRRCL-YNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (636)
Q Consensus 51 ~lL~~~g-y~V~tasdg~eALe~Lre~k~-~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~G 128 (636)
..|.+.+ .-|....+.++|++.++.... .+++ +++-+-.-++++.++.+++...--+|-.-.-.+.+.+.+++++|
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~--iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG 87 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLPV--LEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG 87 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCE--EEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC
Confidence 3444443 456678889999887775322 3564 44445555799999999754332233333444668899999999
Q ss_pred CCeEEeCC-CCHHHHHH
Q 006661 129 ACDYLIKP-IREEELKN 144 (636)
Q Consensus 129 A~DYLlKP-i~~eeLk~ 144 (636)
|. |++-| ++. ++.+
T Consensus 88 A~-FivsP~~~~-~vi~ 102 (212)
T PRK05718 88 AQ-FIVSPGLTP-PLLK 102 (212)
T ss_pred CC-EEECCCCCH-HHHH
Confidence 96 55556 555 4433
No 157
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=56.73 E-value=1.8e+02 Score=28.37 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=61.8
Q ss_pred CccEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHHcCCCceEEEEeCC-----CCCCCHHHHHHH
Q 006661 32 AGLRVLVVDDDI--TCLRILEQMLRRCLYNVT----TCSQAAVALDILRERKGCFDVVLSDVH-----MPDMDGFKLLEH 100 (636)
Q Consensus 32 ~glRVLIVDDD~--~~re~L~~lL~~~gy~V~----tasdg~eALe~Lre~k~~pDLVIlDI~-----MPdmDG~ELLk~ 100 (636)
.|...+++.+.. ...+.+.+.+++.+..+. .+.+..++++.+. . ..|.|.+..- .....+.+.+++
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~ 152 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKK 152 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHH
Confidence 355556654432 233444555555565443 5567788777443 2 3788877421 112456777888
Q ss_pred HhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 101 Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
++...++|+++.-+- ..+.+.++++.||+.++.-
T Consensus 153 ~~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 153 VKKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HHhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 765467777766555 4788999999999987654
No 158
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=56.56 E-value=1.1e+02 Score=33.60 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=61.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceE-EEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDV-VLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDL-VIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
..+||.||.- -.-...+..+.... +++++ .++...+..+.+.+. +.+ +..|+ -+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---~gi~~y~~~-------eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR---LGVPLYCEV-------EELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---hCCCccCCH-------HHHh----cCCCEE
Confidence 4588999987 44444444444333 46654 444444433433332 221 12221 1222 335555
Q ss_pred EEEEec----CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 109 VIMMSA----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa----~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
+|.+.. ..-.+.+.+|+++|..=++-||+..+|..++++.+-+
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 555522 3457889999999999999999998888777766543
No 159
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=56.47 E-value=69 Score=28.51 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=49.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHh-ccC-CCcEEEE
Q 006661 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIG-LEM-DLPVIMM 112 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~MPdm-DG~ELLk~Ir-~~~-~iPVIIL 112 (636)
|.++.-...+..++++.|+++... ....+.++.+...+ ||+|.+...+... ..++.+..++ ..+ ++++++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~--pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEED--ADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcC--CCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 667777888999999999998744 35566677777654 9999998877553 3455555554 344 5666653
No 160
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.42 E-value=84 Score=33.75 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 006661 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~----~g--y~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~ 106 (636)
-|||=|.|......++..+.. .+ ..| +.+.+.+||.+.+.. .+|+|.+|- |.-.+--++++.++. .+.
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn-~~~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDN-MPVDLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHHHhcCCC
Confidence 377777775554444444432 33 223 478899999998854 389999993 322121223333332 334
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
++ |..++--+.+.+.+....|++..-+
T Consensus 244 i~-leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 244 VK-IEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 43 5566667888888888999876543
No 161
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=55.77 E-value=56 Score=32.84 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcC-CCeEEe
Q 006661 66 AAVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI 134 (636)
Q Consensus 66 g~eALe~Lre~k~~pD-LVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~G-A~DYLl 134 (636)
..+..+.+.+.. ++ ++++|+..-+ ..| +++++++++...+|+|.-..-.+.+.+.++++.| |++.++
T Consensus 148 ~~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 355555555433 55 8888886433 234 6888888766679999988888999999999988 888776
No 162
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=55.31 E-value=1.3e+02 Score=26.36 Aligned_cols=91 Identities=16% Similarity=0.061 Sum_probs=50.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg-~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
.+|+++|.++...+.+ ...++.+....-. .+.|+.+.-. ..+.||+...- +..-+.++..+++ .+..++|+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 5799999998764333 3445665543221 2344444333 37888886542 2334555566664 45567766
Q ss_pred EecCCCHHHHHHHHHcCCCeEE
Q 006661 112 MSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYL 133 (636)
... +.+........||+..+
T Consensus 95 ~~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 95 RVN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp EES--SHHHHHHHHHTT-SEEE
T ss_pred EEC--CHHHHHHHHHCCcCEEE
Confidence 554 34445556678887655
No 163
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=55.06 E-value=47 Score=35.34 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=67.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILS 113 (636)
.|-+.=.++.....+..+|....|.+..+.++++.++.++.+++.+|++|+.... +-..+..++.. ..-+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcCccccEEEEe
Confidence 3556667788889999999988999999999999999999888889999998654 34567777753 3457999886
Q ss_pred cCCCHHHHHHHHHcCCCeE-----EeCCCCHHHHHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDY-----LIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DY-----LlKPi~~eeLk~~Iq~vlrk 152 (636)
...... ..-..|.+.| -++.-..++|-..+.+++.+
T Consensus 79 ~~~s~~---~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsr 119 (283)
T PF07688_consen 79 SSESAS---TTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISR 119 (283)
T ss_dssp ---S-----TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHH
T ss_pred cCcccc---cCCCCCceeeehHheEccHHHHHHHHHHHHHHHHH
Confidence 632210 0012333333 33344455665555555543
No 164
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=54.68 E-value=96 Score=34.71 Aligned_cols=104 Identities=14% Similarity=0.242 Sum_probs=65.0
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEEC-----------------------CHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 006661 40 DDDITCLRILEQMLRRCLYN----VTTCS-----------------------QAAVALDILRERKGCFDVVLSDVHMPDM 92 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~----V~tas-----------------------dg~eALe~Lre~k~~pDLVIlDI~MPdm 92 (636)
+++...++.+++.+++.+|. |..+- +.++++++++.....++++.+.==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777788888888777553 33222 3478888777533337887776656554
Q ss_pred CHHHHHHHHhccC--CCcEEEEecC---CCHHHHHHHHHcCCCeE-EeCCCCHHHHHHHH
Q 006661 93 DGFKLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIREEELKNIW 146 (636)
Q Consensus 93 DG~ELLk~Ir~~~--~iPVIILSa~---~d~e~v~kAle~GA~DY-LlKPi~~eeLk~~I 146 (636)
| ++-.++|+... .+|| +... .+...+.++++.|++++ ++||-..--|..++
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~ 346 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETI 346 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHH
Confidence 4 55556665443 4444 3333 25778888998888775 67887644444333
No 165
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.57 E-value=65 Score=33.02 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdm-DG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+.++.+... .-.++++|+..-++ .| +++++.+.....+||++-..-.+.+.+.++++.|++..++
T Consensus 147 ~~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 356666666554 23699999976542 22 6778888766789999999899999999999999998776
No 166
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=54.43 E-value=1.7e+02 Score=30.87 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=42.8
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCe------EEeCCCCHHHHHHHHHHHHHH
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~D------YLlKPi~~eeLk~~Iq~vlrk 152 (636)
++.+.++++..++|||..-.-.+.+.+.+++..||+. ++.+|.-..++++-+.+.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3667777766679999999999999999999999875 566675555555555555443
No 167
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=54.35 E-value=2.1e+02 Score=28.87 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=44.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.|++|+-....+.-|..+++.+. ..+|||.- ... ...+-+..|..+++.++-+.+++.+.+..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIAS-DIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEEC-CCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666533223445566777764 45787753 222 24555677888999999999999999988875
No 168
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.70 E-value=1.2e+02 Score=34.07 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=62.3
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCC--------------C
Q 006661 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHM--------------P 90 (636)
Q Consensus 32 ~glRVLIVDDD----~~~re~L~~lL~~~-gy~V--~tasdg~eALe~Lre~k~~pDLVIlDI~M--------------P 90 (636)
+|..|+++|-- ....+.++.+=+++ ...+ .-+.+.++|..+++. ..|.|..-+-- |
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 56778887752 23333333332222 2222 357888888888764 37888754311 1
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 91 dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..+-+..+..+.....+|||.=..-.....+.+|+.+||+...+=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 222222333333345789998888889999999999999987664
No 169
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=53.40 E-value=42 Score=33.12 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=60.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 36 VLVVDDDITCLRILEQMLRRC------LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~------gy-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
|||=|.+..+...+...++.. .. ..+.+.+.+++.+.++.. +|+|.+|-.-| .+--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g---~d~I~lD~~~~-~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAG---ADIIMLDNMSP-EDLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT----SEEEEES-CH-HHHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhC---CCEEEecCcCH-HHHHHHHHHHhhcCCcE
Confidence 677777766555455554432 22 335889999999988753 89999996544 22233444444434447
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.|..|+--+.+.+.+..+.|++.+-+
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 78888888888888888999766543
No 170
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=53.35 E-value=1.5e+02 Score=31.41 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=40.5
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeE------EeCCCCHHHHHHHHHHHHH
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DY------LlKPi~~eeLk~~Iq~vlr 151 (636)
++.++++++..++|||....-.+.+.+.+.+..||+.. +..|.-..++++-+.+.+.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 67788887666899999999999999999999998643 3345444444444444443
No 171
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=53.25 E-value=1.1e+02 Score=34.98 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=63.1
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006661 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (636)
Q Consensus 32 ~glRVLIVDDD----~~~re~L~~lL~~~-gy~--V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd------------m 92 (636)
.+.+++++|.. ....+.++.+-.+. ... +..+.+.++|..+++.. .|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG---ad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG---ADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC---CCEEEECC-CCCccccceeecCCCc
Confidence 47788988864 22334444443333 222 35677888888877643 68776532 121 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 93 DG~ELLk~Ir---~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.-++++..+. ...++|||.=..-....++.+|+.+||+...+=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 2345555443 234688888778888999999999999987653
No 172
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=52.50 E-value=16 Score=36.49 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=36.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
|||||.+..+-..|.++|++.++++..+...+..++.+... .||.||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999998887766554334444433 3887777
No 173
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.43 E-value=68 Score=36.15 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=50.9
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEeCCCCCC--CHHHHHHHHh--
Q 006661 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDVHMPDM--DGFKLLEHIG-- 102 (636)
Q Consensus 32 ~glRVLIVDDD~~~---re~L~~lL~~~gy~V~tasdg~eALe~Lre~k--~~pDLVIlDI~MPdm--DG~ELLk~Ir-- 102 (636)
.+.+|.+|+-|+-- .+.++.+-+..+..+..+.+..+..+.+.... ..+|+||+|.- +. .--+.++.++
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA--Gr~~~d~~~l~EL~~l 310 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV--GRNYLAEESVSEISAY 310 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC--CCCccCHHHHHHHHHH
Confidence 46789999888642 34555555555666666777776655554332 34899999972 22 1123333332
Q ss_pred -c--cCCCcEEEEecCCCHHHHHHH
Q 006661 103 -L--EMDLPVIMMSADGRVSAVMRG 124 (636)
Q Consensus 103 -~--~~~iPVIILSa~~d~e~v~kA 124 (636)
. .++..++++++......+.+.
T Consensus 311 ~~~~~p~~~~LVLsag~~~~d~~~i 335 (407)
T PRK12726 311 TDVVHPDLTCFTFSSGMKSADVMTI 335 (407)
T ss_pred hhccCCceEEEECCCcccHHHHHHH
Confidence 1 233334556655555444444
No 174
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=52.41 E-value=1.9e+02 Score=31.18 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=59.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----CCe--E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 36 VLVVDDDITCLRILEQMLRRC----LYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~----gy~--V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
|||=|.|....-.++..+++. +|. | +.+++.+++.+++... +|+|++|=+-|+ .--++++.+ ....-.
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLDNm~~e-~~~~av~~l-~~~~~~ 235 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLDNMSPE-ELKEAVKLL-GLAGRA 235 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEecCCCHH-HHHHHHHHh-ccCCce
Confidence 777788777766677776643 442 2 4788999999988753 899999943331 222223332 123333
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeE
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DY 132 (636)
++=.|+.-..+.+.+....|++-+
T Consensus 236 ~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 236 LLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred EEEEeCCCCHHHHHHHhhcCCCEE
Confidence 455788888888888888887643
No 175
>PRK14974 cell division protein FtsY; Provisional
Probab=52.24 E-value=76 Score=34.75 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=51.0
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC---H----HHHHHHHHHcCCCceEEEEeCCCCCCC--HHHHHH
Q 006661 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQ---A----AVALDILRERKGCFDVVLSDVHMPDMD--GFKLLE 99 (636)
Q Consensus 32 ~glRVLIVDDD~---~~re~L~~lL~~~gy~V~tasd---g----~eALe~Lre~k~~pDLVIlDI~MPdmD--G~ELLk 99 (636)
.+.+|++++-|. ...+.++.+....+..+..... . .++++.++.. .+|+||+|.- +.. -.+++.
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTa--Gr~~~~~~lm~ 242 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTA--GRMHTDANLMD 242 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CccCCcHHHHH
Confidence 467999998873 3344555556665655543322 1 2444544443 3899999973 221 233333
Q ss_pred HHh-----ccCCCcEEEEecCCCHHHH--HHHH--HcCCCeEE
Q 006661 100 HIG-----LEMDLPVIMMSADGRVSAV--MRGI--RHGACDYL 133 (636)
Q Consensus 100 ~Ir-----~~~~iPVIILSa~~d~e~v--~kAl--e~GA~DYL 133 (636)
.|+ ..++..++++++....+.. .+.| ..+.+..|
T Consensus 243 eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giI 285 (336)
T PRK14974 243 ELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVI 285 (336)
T ss_pred HHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEE
Confidence 332 2355555666655443333 2333 24666653
No 176
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=52.01 E-value=64 Score=31.51 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=66.1
Q ss_pred HHHHHHcCCCCCCCcccccccC---CCCCCCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC-------CHHHHHHH
Q 006661 5 QRIVQSSGGSGYGSSRAADVAV---PDQFPAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDI 72 (636)
Q Consensus 5 ~~~~~~~gG~~~~s~~~~d~~~---~d~fP~glRVLIVDDD~~~re~L~~lL~~~--gy~V~tas-------dg~eALe~ 72 (636)
..+....|+....++...|+.. ..--..+.||.++-..+...+.+.+.|++. +..+..+. +..+.++.
T Consensus 15 ~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~ 94 (171)
T cd06533 15 VWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIER 94 (171)
T ss_pred HHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHH
Confidence 3455666776556666666531 111124799999999999999998888876 34444311 22334667
Q ss_pred HHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 73 LRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 73 Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
+.+.. ||+|++-+-+|...- ++.+.+...+.+|++-
T Consensus 95 I~~~~--pdiv~vglG~PkQE~--~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 95 INASG--ADILFVGLGAPKQEL--WIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHcC--CCEEEEECCCCHHHH--HHHHHHHHCCCCEEEE
Confidence 76655 999999999997653 4455544445566553
No 177
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.61 E-value=1.5e+02 Score=32.42 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=31.0
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|..+++.+. ..+|||.-........+.+.+. ..+++..|-+.++|.+.+..++.
T Consensus 334 g~~~lEAma--~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 334 GHNPLEPAA--FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred CCCHHHHHH--hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 333444442 4578886322233444444332 12466778889999998888764
No 178
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.19 E-value=1.2e+02 Score=31.98 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=67.9
Q ss_pred CccEEEEEeCCHHH----HHH--HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHH
Q 006661 32 AGLRVLVVDDDITC----LRI--LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLL 98 (636)
Q Consensus 32 ~glRVLIVDDD~~~----re~--L~~lL~~~gy~V~t--asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG-----~ELL 98 (636)
..+|+=|+.|+... .+. -.+.|-+.||.|.- ..|..-|-+ |.+.. + . +++-+--|-.+| -..+
T Consensus 92 ~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akr-L~d~G-c-a-avMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-LEDAG-C-A-AVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHH-HHHTT---S-EBEEBSSSTTT---SSTHHHH
T ss_pred CeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHH-HHHCC-C-C-EEEecccccccCcCCCCHHHH
Confidence 34677777665432 222 23345566999874 334444433 33322 2 2 345555554443 3567
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHH
Q 006661 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (636)
Q Consensus 99 k~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK-----Pi~~eeLk~~Iq~vlr 151 (636)
+.|++..++|||+=.+-.....+.+|++.|++..|+- --++-.+.+++++++.
T Consensus 168 ~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 168 RIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 7777667999999999999999999999999999875 4577888888887775
No 179
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=50.89 E-value=1.8e+02 Score=29.10 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdm---DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+.++.+.+.. .=.++++|+..-+. --+++++++++..++|||.-..-.+.+.+.++++.||++.++
T Consensus 147 ~~~~~~~~~~~~g-a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG-VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC-CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555432 12466777744321 236888888777789999988888899999999999999766
No 180
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=50.29 E-value=2.2e+02 Score=29.77 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=60.5
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC--CHHHHHHHHHHcCCCceEEEEeCCCCC------CCHHHHHHHHh
Q 006661 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS--QAAVALDILRERKGCFDVVLSDVHMPD------MDGFKLLEHIG 102 (636)
Q Consensus 33 glRVLIVDDD~-~~re~L~~lL~~~gy~V~-tas--dg~eALe~Lre~k~~pDLVIlDI~MPd------mDG~ELLk~Ir 102 (636)
|..-+|+=|.+ .....+...+++.+.... .+. +..+-++.+.+....+..++.=.--.+ -+-.+.+++++
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 44555554544 344455555666665533 222 223444445444434555554111111 12456777777
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 103 ~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
+..+.||++=.+-.+.+.+.++.+.||+.++.-.
T Consensus 195 ~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 195 AYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred hhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 6667887775555668899999999999999874
No 181
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=50.28 E-value=1.1e+02 Score=28.62 Aligned_cols=55 Identities=18% Similarity=0.031 Sum_probs=40.1
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 80 FDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 80 pDLVIlDI~MPdmDG-------~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.|.|.++-..+...+ ...++.++....+||+....-.+.+.+.++++.||+.+..
T Consensus 137 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 137 VDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 788888776664332 2445555556789999988888878899999999987753
No 182
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=50.26 E-value=1.6e+02 Score=31.91 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=57.4
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 36 VLVVDDDITCLRILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~--gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
|||=|.|....-.++..+++ . ....+.+.+.+++.+.++.. +|+|.+|-.-| .+--++++.+ ..-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~g---aDiI~LDn~s~-e~~~~av~~~---~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKAG---ADIIMLDNFTT-EQMREAVKRT---NGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcC---CCEEEeCCCCh-HHHHHHHHhh---cCCeE
Confidence 66666665555445554432 2 23456899999999998743 79999995443 1222223322 22235
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEE
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYL 133 (636)
|..|+--+.+.+.+..+.|++...
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 667778888888888899987543
No 183
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=49.82 E-value=1.7e+02 Score=32.52 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=60.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
+++++||-|.+. ++.++++.........-.-..++..+++.. .|++++=-. .+.=|+.+++.+. ..+|||.-
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 456666665543 334444443322111112233455555543 477665321 2233555666653 46888853
Q ss_pred ecCCCHHHHHHHHHc---CCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 113 Sa~~d~e~v~kAle~---GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.. .. ..+.++. |-.+++..|-+.++|.+.+.+++.
T Consensus 362 ~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 32 22 3344555 889999999999999999988764
No 184
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.59 E-value=1.4e+02 Score=33.67 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=52.9
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CC-CCCHHHHHHHH-h-c
Q 006661 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MP-DMDGFKLLEHI-G-L 103 (636)
Q Consensus 32 ~glRVLIVDDD~~~---re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~--MP-dmDG~ELLk~I-r-~ 103 (636)
.+.+|.+|+-|+-- .+.++.+-+..+..+..+.+..+....++... .+|+||+|.- .+ +....+.+..+ . .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 46899999988732 23344444445666666777777666666543 4899999963 11 11233333333 3 1
Q ss_pred cCCC-cEEEEecCCCHHHHHHH
Q 006661 104 EMDL-PVIMMSADGRVSAVMRG 124 (636)
Q Consensus 104 ~~~i-PVIILSa~~d~e~v~kA 124 (636)
...+ ..+++++........++
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHH
Confidence 1222 35667777665555443
No 185
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=49.05 E-value=1.7e+02 Score=30.20 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcC-CCeEEe------C
Q 006661 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI------K 135 (636)
Q Consensus 67 ~eALe~Lre~k~~pD-LVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~G-A~DYLl------K 135 (636)
.+..+.+.+. .+| ++++|+.--+ +.| +++++++++..++|||..-.-.+.+.+.++++.| ++..+. +
T Consensus 158 ~~~~~~l~~~--G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEKL--GAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHHc--CCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 3444445443 266 4555543211 122 6788888777789999999999999999999988 777433 3
Q ss_pred CCCHHHHHHHHH
Q 006661 136 PIREEELKNIWQ 147 (636)
Q Consensus 136 Pi~~eeLk~~Iq 147 (636)
-++.++++..++
T Consensus 236 ~~~~~~~~~~~~ 247 (254)
T TIGR00735 236 EITIGEVKEYLA 247 (254)
T ss_pred CCCHHHHHHHHH
Confidence 355555554443
No 186
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=48.76 E-value=1.3e+02 Score=32.61 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeC-----CCC-CC-CHHHHHHHHhccCCCcEEEEecCCCHHHHH
Q 006661 51 QMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-----HMP-DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVM 122 (636)
Q Consensus 51 ~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI-----~MP-dm-DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~ 122 (636)
+.++..+..| ..+.+.++|...++.. +|.|++-= |.. +. +-+.|+..++...++|||.--+-.+...+.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~G---~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ia 206 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKAG---ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIA 206 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhcC---CCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHH
Confidence 3345555544 5899999998877643 89888753 222 22 357778888777789999988888999999
Q ss_pred HHHHcCCCeEEeC
Q 006661 123 RGIRHGACDYLIK 135 (636)
Q Consensus 123 kAle~GA~DYLlK 135 (636)
.++.+||++...=
T Consensus 207 aal~lGA~gV~~G 219 (330)
T PF03060_consen 207 AALALGADGVQMG 219 (330)
T ss_dssp HHHHCT-SEEEES
T ss_pred HHHHcCCCEeecC
Confidence 9999999997764
No 187
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.15 E-value=2.8e+02 Score=30.05 Aligned_cols=91 Identities=14% Similarity=0.010 Sum_probs=58.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC-----CC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 35 RVLVVDDDITCLRILEQMLRRC-----LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~-----gy-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
-|||=|.|....-.++..+++. .. ..+.+++.+++.+.+.. .+|+|++|=+-|+ +--++++.++ .-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe-~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD-MMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHhhc---CCe
Confidence 4788788776655555554432 12 23578999999998864 3899999943322 2222333332 234
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeE
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DY 132 (636)
+|-.|+--+.+.+.+..+.|++-.
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 566788888888888888888643
No 188
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.65 E-value=1.5e+02 Score=34.21 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=41.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir-~~~~iPVI 110 (636)
+..|+++|.|+...+.++ +.++.+...+ .-.+.++.+.-. +.|.+++-+.-.+. -..++..++ ..++.++|
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i~--~a~~viv~~~~~~~-~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHLD--CARWLLLTIPNGYE-AGEIVASAREKRPDIEII 512 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCcc--ccCEEEEEcCChHH-HHHHHHHHHHHCCCCeEE
Confidence 455666666655433332 2344443322 112333333222 35666554322111 112333333 34566777
Q ss_pred EEecCCCHHHHHHHHHcCCCeEE
Q 006661 111 MMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYL 133 (636)
.-..+ .+......+.||+..+
T Consensus 513 ar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 513 ARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred EEECC--HHHHHHHHHcCCCEEE
Confidence 65543 3444445567876444
No 189
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=47.62 E-value=2e+02 Score=31.22 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=57.5
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC------------CC
Q 006661 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP------------DM 92 (636)
Q Consensus 32 ~glRVLIVDD----D~~~re~L~~lL~~~g-y~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MP------------dm 92 (636)
.+.+++++|- .....+.++.+-+... ..|. .+.+.+.|..+++. ..|.|.+.+ -| +.
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 4667777763 2333444444333321 2332 46677777776653 378887632 11 11
Q ss_pred CHHHHHHHH---hccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 93 DG~ELLk~I---r~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
--+.++..+ ....++|||.--.-.+...+.+|+.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 123333333 223468988766777889999999999998765
No 190
>PRK13566 anthranilate synthase; Provisional
Probab=47.33 E-value=42 Score=40.39 Aligned_cols=81 Identities=22% Similarity=0.262 Sum_probs=50.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe--CCCCC-CCHHHHHHHHhccC
Q 006661 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD--VHMPD-MDGFKLLEHIGLEM 105 (636)
Q Consensus 29 ~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlD--I~MPd-mDG~ELLk~Ir~~~ 105 (636)
.--.++||||||....+...+.++|++.|++|..+..... .+.+... .||.||+- -..|. .+-.++++.+. ..
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~ 597 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-AR 597 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HC
Confidence 3346789999999998999999999999998877665432 2223322 38987761 11121 12234444432 34
Q ss_pred CCcEEEEe
Q 006661 106 DLPVIMMS 113 (636)
Q Consensus 106 ~iPVIILS 113 (636)
++||+=+-
T Consensus 598 ~iPILGIC 605 (720)
T PRK13566 598 NLPIFGVC 605 (720)
T ss_pred CCcEEEEe
Confidence 68877553
No 191
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=47.02 E-value=24 Score=34.78 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=45.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC-CC-CCCCH--HHHHHHHhccCCCcEEE
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV-HM-PDMDG--FKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI-~M-PdmDG--~ELLk~Ir~~~~iPVII 111 (636)
|||||....+-..|.++|++.+++|....+...-++.+++.. ||.||+-= -| |..++ ..+++.+ ..++||+=
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLA--PSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 899999999999999999999988877665432233344333 78776621 11 11222 2344433 24678775
Q ss_pred E
Q 006661 112 M 112 (636)
Q Consensus 112 L 112 (636)
+
T Consensus 78 I 78 (191)
T PRK06774 78 V 78 (191)
T ss_pred E
Confidence 4
No 192
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=46.00 E-value=1.8e+02 Score=32.73 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=42.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc------CCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~------GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.|++++--. .+.-|+.+++.+. ..+|||. |.... ..+.++. |.++++..|-+.++|.+.+.+++.
T Consensus 371 aDv~vlpS~-~Eg~p~~vlEAma--~G~PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 371 LDVLVLTSI-SEGQPLVILEAMA--AGIPVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CCEEEeCch-hhcCChHHHHHHH--cCCCEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 466665432 2333556666653 4678876 33222 3444544 778999999999999999988764
No 193
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=45.62 E-value=2e+02 Score=28.98 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=58.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHHcCCCceEEEEeCC-CC-CCCHHHHHHHHhccCC
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVH-MP-DMDGFKLLEHIGLEMD 106 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tas-------dg~eALe~Lre~k~~pDLVIlDI~-MP-dmDG~ELLk~Ir~~~~ 106 (636)
|||=|-|...++.++..-++.|-++...+ ++++.++++...++.|=+|..|=. .. ..-|=+.++.+...++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 45558888889999998888887776544 788999999988877778887753 22 3467788888877777
Q ss_pred CcE---EEEecC
Q 006661 107 LPV---IMMSAD 115 (636)
Q Consensus 107 iPV---IILSa~ 115 (636)
+-| |.+++.
T Consensus 83 IeVLG~iAVASn 94 (180)
T PF14097_consen 83 IEVLGAIAVASN 94 (180)
T ss_pred ceEEEEEEEEec
Confidence 654 444443
No 194
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=45.48 E-value=2.7 Score=41.89 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=73.8
Q ss_pred EEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006661 37 LVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (636)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy----~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~iPV 109 (636)
+.+||+...+..+..++...-+ .........+....... ..+|+++.++.||++++++++.++.. ..++++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--ccccccccccccccccccccccccccCCCCCCCCc
Confidence 7777777777666666665422 11112221110000000 34899999999999999999988753 345667
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
+++............+..++.+|+.||....++...+.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 137 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVR 137 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcccCCcccc
Confidence 67776666666777788889999999998777777666654
No 195
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=45.16 E-value=1.7e+02 Score=30.95 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=41.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.|++++=-. .+.=|..+++.+. ..+|||. |.... ..+.++.|.++++..|-+.++|...+..++.
T Consensus 273 adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 273 LDLFVLPSL-AEGISNTILEAMA--SGLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred cCEEEeccc-cccCchHHHHHHH--cCCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 466554211 2223556666653 4678876 33222 3455677888999999999999999988764
No 196
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=45.00 E-value=2.1e+02 Score=26.44 Aligned_cols=110 Identities=19% Similarity=0.286 Sum_probs=66.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasd--g~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
..++++|+.+.... ..+.......+. .+..... ..+..++++. .|++++=... +.=|..+++.+. ..+
T Consensus 46 ~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~ 117 (172)
T PF00534_consen 46 PNYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGC 117 (172)
T ss_dssp TTEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-
T ss_pred CCeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--ccc
Confidence 34677788733322 234444444332 3433333 3455666654 4777775444 445666777663 456
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|||+ +. .....+.+..+..+++..+.+.++|...+.+++...
T Consensus 118 pvI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 118 PVIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ceee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 6664 33 233456778888999999999999999999988643
No 197
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=44.63 E-value=1e+02 Score=32.44 Aligned_cols=55 Identities=27% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH-H---HHHHHHHHcCCCceEEEEeC
Q 006661 31 PAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA-A---VALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 31 P~glRVLIVDDD~~---~re~L~~lL~~~gy~V~tas---dg-~---eALe~Lre~k~~pDLVIlDI 87 (636)
..+.+|+++|-|.. ..+.++.+.+..+..+.... +. . ++++.+.. ..+|+||+|.
T Consensus 98 ~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT 162 (272)
T TIGR00064 98 KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDT 162 (272)
T ss_pred hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeC
Confidence 34789999998852 23455555666665554332 22 2 33333333 3489999997
No 198
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=44.37 E-value=2e+02 Score=29.42 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=61.3
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeC------CCCCCCHHHHHHH
Q 006661 32 AGLRVLVVDDDI----TCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDV------HMPDMDGFKLLEH 100 (636)
Q Consensus 32 ~glRVLIVDDD~----~~re~L~~lL~~~gy-~V~tasdg~eALe~Lre~k~~pDLVIlDI------~MPdmDG~ELLk~ 100 (636)
.|..|+-+|--. ..++.+-..+++.+. -...|++.+|++...+. .+|+|=+=+ ...+..-|+|+++
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 355677776542 223334444444332 22378899999988764 389887643 1113346899999
Q ss_pred HhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 101 Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
|... ++|||.=-...+.+.+.+++++||+..++-
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 9754 899888777889999999999999998775
No 199
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.31 E-value=2.3e+02 Score=29.20 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCC-CCCCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc-CCCeEEe------C
Q 006661 67 AVALDILRERKGCFD-VVLSDVHM-PDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI------K 135 (636)
Q Consensus 67 ~eALe~Lre~k~~pD-LVIlDI~M-PdmDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~-GA~DYLl------K 135 (636)
.+..+.+.+. .++ ++++|+.- .-+.| +++++++++..++|||.--.-.+.+.+.++++. |++..+. .
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 3444444433 254 67767542 11222 677888876678999998888899999999975 9988766 3
Q ss_pred CCCHHHHHHHHH
Q 006661 136 PIREEELKNIWQ 147 (636)
Q Consensus 136 Pi~~eeLk~~Iq 147 (636)
-++.++++..++
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK02083 234 EITIGELKAYLA 245 (253)
T ss_pred CCCHHHHHHHHH
Confidence 455666655443
No 200
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=43.80 E-value=1.6e+02 Score=29.81 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=56.5
Q ss_pred HHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE-EecCCCHHHHHHHHHcCC
Q 006661 52 MLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGA 129 (636)
Q Consensus 52 lL~~~g-y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII-LSa~~d~e~v~kAle~GA 129 (636)
.|.+.. .-|....+.+++++.++.-. .--+=++.+.+-.-++++.++.++.....++++ .-.--+.+.+..|+++||
T Consensus 6 ~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 6 PFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 344433 34556677777777665421 112336666677778999999986544434443 333446778899999999
Q ss_pred CeEEeCCCCHHHHHHH
Q 006661 130 CDYLIKPIREEELKNI 145 (636)
Q Consensus 130 ~DYLlKPi~~eeLk~~ 145 (636)
+ |+.-|....++.+.
T Consensus 85 ~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 85 R-LIVTPNTDPEVIRR 99 (206)
T ss_pred C-EEECCCCCHHHHHH
Confidence 5 55557555555443
No 201
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.17 E-value=2.5e+02 Score=30.17 Aligned_cols=90 Identities=18% Similarity=0.076 Sum_probs=56.6
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 36 VLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~g--y-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
|||=|.|....-.+...+++ .. . ..+.+.+.+++.+.++. .+|+|.+|=.-| -++-+.+.......
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~----e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTP----DTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCH----HHHHHHHHHhCCCc
Confidence 66666665554444444433 22 2 34689999999999864 389999994332 23333332222223
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeE
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DY 132 (636)
++..|+--+.+.+.+..+.|++-.
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEE
Confidence 477888888888888888998654
No 202
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=43.11 E-value=4.6e+02 Score=28.34 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=52.5
Q ss_pred HHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHH
Q 006661 48 ILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI 125 (636)
Q Consensus 48 ~L~~lL~~~gy~V~tas--dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAl 125 (636)
.++.+....+-.|.... +.++..+.+.. .|++++--...+.=|.-+++.+. ..+|||... ... ..+.+
T Consensus 247 ~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma--~G~PVI~s~-~gg---~~Eiv 316 (380)
T PRK15484 247 KVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA--AGKPVLAST-KGG---ITEFV 316 (380)
T ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH--cCCCEEEeC-CCC---cHhhc
Confidence 34444433333343322 23444444432 47777533222323445555553 468887633 222 34456
Q ss_pred HcCCCeE-EeCCCCHHHHHHHHHHHHH
Q 006661 126 RHGACDY-LIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 126 e~GA~DY-LlKPi~~eeLk~~Iq~vlr 151 (636)
..|.++| +..|.+.++|.+.+.+++.
T Consensus 317 ~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 317 LEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred ccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 6788898 5578999999999988764
No 203
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.98 E-value=3.7e+02 Score=29.09 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=58.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 35 RVLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~----~g--y-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
-|||=|.|......+...+++ .. . ..+.+.+.+++.+.+.. .+|+|++|=+-|+ +--++++.++ .-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhc---Cc
Confidence 478888887666555555543 23 2 23578999999998864 3899999943332 2223333332 22
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCe
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACD 131 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~D 131 (636)
.++-.|+--+.+.+.+-...|++-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCE
Confidence 356678888888888888888864
No 204
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=42.67 E-value=3.1e+02 Score=29.94 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=57.1
Q ss_pred EEEEeCCHHHHHHHHHHHH-------hCCC---eEEEECCHHHHHHHHH---HcCCCceEEEEeCC--CCC---CCHHHH
Q 006661 36 VLVVDDDITCLRILEQMLR-------RCLY---NVTTCSQAAVALDILR---ERKGCFDVVLSDVH--MPD---MDGFKL 97 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~-------~~gy---~V~tasdg~eALe~Lr---e~k~~pDLVIlDI~--MPd---mDG~EL 97 (636)
|||=|.|....-.+...++ ...+ ..+.+.+.+++.+.+. ..+..+|+|++|=+ -|+ .+--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 7777777655433333332 2222 2357889999999886 11124899999954 122 122223
Q ss_pred HHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCe
Q 006661 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (636)
Q Consensus 98 Lk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~D 131 (636)
.+.+........|-.|+--+.+.+.+....|++-
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCE
Confidence 3333322223347788888888888888888764
No 205
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=42.53 E-value=1.5e+02 Score=28.92 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=48.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCe
Q 006661 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACD 131 (636)
Q Consensus 61 ~tasdg~eALe~Lre~k~~pDLVIlDI~MPd--------mDG~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~D 131 (636)
..|.+.+++.+..+ . .+|.|.++-..+. ..|++.++.+... +++||+.+.+- +.+.+.++++.|+++
T Consensus 101 ~s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 36677777765443 2 3899987655442 2378889888543 46898877655 577888889999988
Q ss_pred EEe
Q 006661 132 YLI 134 (636)
Q Consensus 132 YLl 134 (636)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 654
No 206
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=42.52 E-value=1.4e+02 Score=29.17 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=63.2
Q ss_pred HHHHHcCCCCCCCcccccccC---CCCCCCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC-------CHHHHHHHH
Q 006661 6 RIVQSSGGSGYGSSRAADVAV---PDQFPAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDIL 73 (636)
Q Consensus 6 ~~~~~~gG~~~~s~~~~d~~~---~d~fP~glRVLIVDDD~~~re~L~~lL~~~--gy~V~tas-------dg~eALe~L 73 (636)
.++...|-.........|+.. ..--..+.+|.++-..+...+.+...|.+. +..+.-+. +.++.++.+
T Consensus 18 ~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I 97 (172)
T PF03808_consen 18 WAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRI 97 (172)
T ss_pred HHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHH
Confidence 344445334445555555531 111124689999999999999999999876 44554333 234555566
Q ss_pred HHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 74 RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 74 re~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
.... ||+|++-+-+|... .++.+.+.....++++
T Consensus 98 ~~~~--pdiv~vglG~PkQE--~~~~~~~~~l~~~v~i 131 (172)
T PF03808_consen 98 NASG--PDIVFVGLGAPKQE--RWIARHRQRLPAGVII 131 (172)
T ss_pred HHcC--CCEEEEECCCCHHH--HHHHHHHHHCCCCEEE
Confidence 6554 99999999888754 3455555545556444
No 207
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=42.35 E-value=76 Score=33.27 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=50.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHH-----------
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGF----------- 95 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tas-------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~----------- 95 (636)
|||||+-.+-.+-..|.+.|...+++|.... +.++..+.++..+ ||+||-=.-+.+.|..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999998888899999988888887653 5566666777665 9988764433332221
Q ss_pred ----HHHHHHhccCCCcEEEEecC
Q 006661 96 ----KLLEHIGLEMDLPVIMMSAD 115 (636)
Q Consensus 96 ----ELLk~Ir~~~~iPVIILSa~ 115 (636)
..+.++....++++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 11222223467899999875
No 208
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=42.15 E-value=3.9e+02 Score=29.91 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=59.8
Q ss_pred HHHHHHHhCCCeEEE----ECCHHHHHHHHHHcCCCceEEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEecCCCHH
Q 006661 48 ILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (636)
Q Consensus 48 ~L~~lL~~~gy~V~t----asdg~eALe~Lre~k~~pDLVIlDI~----MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e 119 (636)
.+.+..++.+..+.. +.+..+.++.+.+. ..|.|.+..- .....+++.+++++...++||++..+- ..+
T Consensus 98 ~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~ 174 (430)
T PRK07028 98 DAVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAE 174 (430)
T ss_pred HHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHH
Confidence 344444455655443 23333333333333 3788866531 122467888888876566888876655 567
Q ss_pred HHHHHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006661 120 AVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 120 ~v~kAle~GA~DYL-----lKPi~~eeLk~~Iq~vlrk 152 (636)
.+.++++.||+.++ .+.-++.+..+.++..+++
T Consensus 175 n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 175 TAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 78899999999654 4444555555555555443
No 209
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=42.14 E-value=1.9e+02 Score=31.63 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=44.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006661 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (636)
Q Consensus 34 lRVLIVDDD~~~r-----e~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk 99 (636)
-|+|||-|..... +.+...|++.++++..+. +..++++.+++.+ +|+||- ..+..-+++.|
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4899998876544 677888887777665543 3557777777765 898886 56767777776
Q ss_pred HH
Q 006661 100 HI 101 (636)
Q Consensus 100 ~I 101 (636)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 65
No 210
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=41.89 E-value=82 Score=32.62 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCCcEEEEecC------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006661 105 MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (636)
Q Consensus 105 ~~iPVIILSa~------~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq 147 (636)
-.+|||+|+-+ .+..++..|-++||.+||+-.+.+||-...-.
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rn 142 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRN 142 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHH
Confidence 35899999855 46788999999999999999888888655433
No 211
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.66 E-value=2.1e+02 Score=29.47 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=36.7
Q ss_pred HHHHHHhccCCCcEEEEe-----cCCCHHHHHHHHHcCCCeEEeC--CCC-HHHHHHHHHHH
Q 006661 96 KLLEHIGLEMDLPVIMMS-----ADGRVSAVMRGIRHGACDYLIK--PIR-EEELKNIWQHV 149 (636)
Q Consensus 96 ELLk~Ir~~~~iPVIILS-----a~~d~e~v~kAle~GA~DYLlK--Pi~-~eeLk~~Iq~v 149 (636)
++++.++...++|+++|+ ..+...++.++.++|++.+++- |+. .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 467777766788987764 3344555778889999999885 343 45666555554
No 212
>PRK04302 triosephosphate isomerase; Provisional
Probab=41.41 E-value=3.9e+02 Score=27.02 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=36.6
Q ss_pred HHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHH
Q 006661 96 KLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQH 148 (636)
Q Consensus 96 ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP--i~~eeLk~~Iq~ 148 (636)
++++.+++. .++|||.-.+-.+.+.+..+.+.|+++.++-. ++.+.+...++.
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 445556653 46899988888889999999999999987653 233344444443
No 213
>PRK10742 putative methyltransferase; Provisional
Probab=41.36 E-value=2.1e+02 Score=30.28 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=42.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC------C----CeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC------L----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~------g----y~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmD 93 (636)
.|.+|..||-++.+...|++-|++. + -.+. ...+..+.|+. ....||+|.+|=+-|.-.
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCCc
Confidence 3778999999999999999999873 1 1222 34566655554 333599999999988743
No 214
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=41.33 E-value=1.3e+02 Score=30.84 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=44.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEeCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V~-tasdg~eALe~Lre~--k~~pDLVIlDI~ 88 (636)
.+..-+|.-+|-++...+..++.+.+.++. |. ...++.+.+..+... ...||+|++|..
T Consensus 90 ~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 90 LPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 344559999999999999999999988753 33 566777777766433 235999999974
No 215
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=40.74 E-value=3.6e+02 Score=27.62 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=59.8
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 33 GLRVLVVDDDI---TCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 33 glRVLIVDDD~---~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
.++++|+.+.+ ...+.+...+.+.+. .|......++..+.+.. .|++|+=-.-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 35566664432 233333444444332 24433333333333332 47666533234445666777663 467
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
|||.. .... ..+.+..+.++++..|-+.+++...+..++
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 88753 2222 345567777899999999999999886554
No 216
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.64 E-value=5e+02 Score=27.98 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=58.2
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hCCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006661 35 RVLVVDDDITCL--R--ILEQMLR----RCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (636)
Q Consensus 35 RVLIVDDD~~~r--e--~L~~lL~----~~gy---~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~ 103 (636)
.|||=|.|.... . .+...+. ...+ ..+.+.+.+++.+.+.. .+|+|.+|=.-| .+--++++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~-e~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSL-DDLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCH-HHHHHHHHHhC-
Confidence 478888886643 1 2444443 3332 33589999999998864 389999994322 22223333332
Q ss_pred cCCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 104 EMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
...+|-.|+--+.+.+.+....|++-.
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 233677888889998888888887643
No 217
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=40.61 E-value=1.5e+02 Score=30.21 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+..+.+.... ..+|++|+.--+ +.| +++++++.+...+|||.=-+-.+.+.+.++.+.||+..++
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4444555554432 479999997643 233 7889999777789999888888999999999999998776
No 218
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.60 E-value=1.9e+02 Score=31.02 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=59.6
Q ss_pred cEEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH-------------HHHcCCCceEEEEeCCCCCCCHH
Q 006661 34 LRVLVV--DDDITC---LRILEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (636)
Q Consensus 34 lRVLIV--DDD~~~---re~L~~lL~~~gy~V~tasdg~eALe~-------------Lre~k~~pDLVIlDI~MPdmDG~ 95 (636)
|+|.|+ -+.+.. ...+.++|.+.+..+.........+.. .......+|+||+ -+.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 567777 233333 445555666668777664433222210 0111123688777 266774
Q ss_pred HHHHHHh--ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 96 KLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 96 ELLk~Ir--~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
+++..+ ...++||+=+- .|-.+||. .++++++...+.+++++.+.
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~~ 123 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDYT 123 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCce
Confidence 333333 23478887543 36667877 57889999999999876543
No 219
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.26 E-value=2.4e+02 Score=29.36 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=42.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.|++++=.. .+.-|..+++.+. ..+|||.. ... ...+.+..|..+|+.+|-+.+++.+.+..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVAS-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEEe-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466655322 2334556666653 46788763 222 24566778889999999999999998887753
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=39.95 E-value=5.7e+02 Score=28.47 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=63.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~-V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I-r~~~~iPVI 110 (636)
-+|..+|-++...+.++.-++..+.. + +...|....+. .....||+|++|- ++. ..+++..+ +....--++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~---~~~~~fDvIdlDP--fGs-~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR---YRNRKFHVIDIDP--FGT-PAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH---HhCCCCCEEEeCC--CCC-cHHHHHHHHHhcccCCEE
Confidence 47999999999999999988766432 2 34445444443 3223499999986 442 23445443 333344688
Q ss_pred EEecCCCHHH----HHHHH-HcCCCeEEeCC-CC-HHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSA----VMRGI-RHGACDYLIKP-IR-EEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~----v~kAl-e~GA~DYLlKP-i~-~eeLk~~Iq~vlrk 152 (636)
.+|+.+.... ...++ +.|+. ..|. +. +--|+-++..+.+.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~--~~~~~~~~E~glRiLlg~i~r~ 190 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGAN--PVKTESCHESALRLLLGFVKRT 190 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCc--ccCCcchHHHHHHHHHHHHHHH
Confidence 8887765532 44555 44654 3343 22 22344444444443
No 221
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=39.89 E-value=2e+02 Score=31.54 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=42.4
Q ss_pred ccEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH
Q 006661 33 GLRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL 98 (636)
Q Consensus 33 glRVLIVDDD~~~-----re~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELL 98 (636)
+-|+|||-|.... .+.+++.|+..++++..+. +..++++.+++.. +|+||- +.+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHH
Confidence 3589988776433 3667788887777665443 3456777777765 899875 4566666666
Q ss_pred HHH
Q 006661 99 EHI 101 (636)
Q Consensus 99 k~I 101 (636)
|.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 654
No 222
>PRK07695 transcriptional regulator TenI; Provisional
Probab=39.77 E-value=2.6e+02 Score=27.61 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.5
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPd-------mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
++.+.+++.+... . ..|.|++.-..|. ..|++.++.+....++||+.+-+- +.+.+.++++.|++.+
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5667777655433 2 3798887643221 236788888876667999988776 7788899999999876
No 223
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=39.72 E-value=33 Score=36.19 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=34.2
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 33 glRVLIVDDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
+.+|.+|+-|+- ..+.+..+-...+..+..+.+..+..+.++... .+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 378998888763 233444444444556666667666666666543 489999985
No 224
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=39.59 E-value=99 Score=31.98 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=42.7
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHH-cCCCceEEEEeCCC
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRE-RKGCFDVVLSDVHM 89 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V~tasdg~eALe~Lre-~k~~pDLVIlDI~M 89 (636)
...|..-++.-||-++...+..++.+++.+.. |..... -+|++.+.. ....||+|++|..=
T Consensus 79 ~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK 142 (219)
T COG4122 79 LALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADK 142 (219)
T ss_pred hhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCCh
Confidence 44554459999999999999999999998753 433331 344444443 23569999999753
No 225
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.41 E-value=3.3e+02 Score=28.08 Aligned_cols=89 Identities=6% Similarity=-0.029 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCC------CHHHHHHHHhccC-CCcEEEEec
Q 006661 45 CLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLEM-DLPVIMMSA 114 (636)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasdg---~eALe~Lre~k~~pDLVIlDI~MPdm------DG~ELLk~Ir~~~-~iPVIILSa 114 (636)
....+...+++.|..+..+-+. .+.++.+.... ..++++ -.+|+- +-.+.++++++.. +.||++=.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 3445666667777765543333 34444444333 567766 344442 2234566665443 467665444
Q ss_pred CCCHHHHHHHHHcCCCeEEeCC
Q 006661 115 DGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 115 ~~d~e~v~kAle~GA~DYLlKP 136 (636)
-.+.+.+.++.+.||+.++.-.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 4477888888999999999864
No 226
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=39.38 E-value=40 Score=33.29 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=45.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE-eCC-CCCCCH--HHHHHHHhccCCCcEEE
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS-DVH-MPDMDG--FKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl-DI~-MPdmDG--~ELLk~Ir~~~~iPVII 111 (636)
|||||....+-..+.++|++.++.+....+....++.+.... ||.||+ -=- -|..++ .++++++ ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALL--PLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcC--CCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 899999999999999999999988876553322233333333 885555 211 122222 3344443 34678775
Q ss_pred Ee
Q 006661 112 MS 113 (636)
Q Consensus 112 LS 113 (636)
+-
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 53
No 227
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=39.26 E-value=1.8e+02 Score=28.71 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=33.5
Q ss_pred ceEEEEeCCCCCCC-------HHHHHHHHhccC---CC-cEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 80 FDVVLSDVHMPDMD-------GFKLLEHIGLEM---DL-PVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 80 pDLVIlDI~MPdmD-------G~ELLk~Ir~~~---~i-PVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+|.|+++-.-|+.+ +++.+++++... .+ ++|++.+--+.+.+.++.+.|++.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 67666665445443 334444443221 22 4555656666678888888999976554
No 228
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=39.25 E-value=2.7e+02 Score=27.20 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.8
Q ss_pred CHHHHHHHHhccCCCcEEE-EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006661 93 DGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVII-LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~I 146 (636)
-|++.++.|+.....|+.+ +..++..+++..+.+.|++..++-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 5889999998666667633 55556677888889999998777554444554444
No 229
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=39.19 E-value=2.3e+02 Score=30.18 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=59.8
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---C-----CCCCCHHHHHHHHhccCCCcEEEEecC-CCHHHHHHHHHcCCCeEE
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDV---H-----MPDMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI---~-----MPdmDG~ELLk~Ir~~~~iPVIILSa~-~d~e~v~kAle~GA~DYL 133 (636)
+++.++|.+..++.. +|.+-..+ + -|.. ++++++.|++..++|+++.-+. -+.+.+.++++.|++..=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 568899999887544 78777542 2 1334 4899999987778999887643 356678899999998875
Q ss_pred eCCCCHHHHHHHHHHHHHHhh
Q 006661 134 IKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 134 lKPi~~eeLk~~Iq~vlrkk~ 154 (636)
+- .+|+.++.+.+++..
T Consensus 229 v~----T~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKVL 245 (282)
T ss_pred EC----cHHHHHHHHHHHHHH
Confidence 53 366666666665543
No 230
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=39.06 E-value=1.4e+02 Score=29.90 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=44.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe--CCCCHHHHHHHHHHH
Q 006661 83 VLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (636)
Q Consensus 83 VIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl--KPi~~eeLk~~Iq~v 149 (636)
-+.|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 49 ~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 49 SVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 3444433334567888888766789999865445666788999999999873 224446666665554
No 231
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.86 E-value=1.3e+02 Score=32.68 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEeC
Q 006661 31 PAGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 31 P~glRVLIVDDD~~~r---e~L~~lL~~~gy~V~tas---dg----~eALe~Lre~k~~pDLVIlDI 87 (636)
+.+.+|+|++-|..-. +.++..-.+.+..+.... +. .+++..... ..+|+||+|.
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDT 204 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDT 204 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 4578999999886332 234444444455544332 22 233333333 3499999997
No 232
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.83 E-value=1.6e+02 Score=29.97 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=52.3
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pD-LVIlDI~MPd---mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..+..+..+.+.+.. +| |+++|+.--+ ..-+++++++++...+||++--.-.+.+.+.+++..|++..++=
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 347777777776643 54 8888887421 12367888887767799999988889999999999998766543
No 233
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.54 E-value=1.4e+02 Score=33.08 Aligned_cols=67 Identities=13% Similarity=-0.020 Sum_probs=44.8
Q ss_pred HHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 69 ALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 69 ALe~Lre~k~~pDLVIlDI~MPdmD-G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
-++.|.+....+|+|++|+--.... -++.+++||....-+.|+--.-.+.+.+..++++||+...+-
T Consensus 111 r~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3334433323489999998655433 467888887654334454444677888999999999987644
No 234
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=38.43 E-value=96 Score=30.37 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCC-------HHHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdmD-------G~ELLk~Ir~~-----~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
+..+.++.+.. .+|.|+++-.-|+.+ +++.++++++. ..+|+++..+ -..+.+.++++.||+.+
T Consensus 115 t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG-I~~env~~l~~~gad~i 190 (210)
T TIGR01163 115 TPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG-VNDDNARELAEAGADIL 190 (210)
T ss_pred CCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-cCHHHHHHHHHcCCCEE
Confidence 34555554432 257777765444333 33444444321 2356554443 35678888899999987
Q ss_pred EeC
Q 006661 133 LIK 135 (636)
Q Consensus 133 LlK 135 (636)
++-
T Consensus 191 ivg 193 (210)
T TIGR01163 191 VAG 193 (210)
T ss_pred EEC
Confidence 664
No 235
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.41 E-value=2.9e+02 Score=28.40 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCC-CC-C-CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 64 SQAAVALDILRERKGCFDVVLSDVH-MP-D-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 64 sdg~eALe~Lre~k~~pDLVIlDI~-MP-d-mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.++.+..+.+.+. .-.|+++|+. +- + ..-+++++++.+...+||++=-.-.+.+.+.++++.|++..++-
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 4777777776653 1348888886 32 2 24588999997777889998777888899999999999987763
No 236
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=38.37 E-value=1.1e+02 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=34.5
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 80 pDLVIlDI~MPdmDG-------~ELLk~Ir~~-----~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+|.|+++-..|+.+| ++.++++++. +++|+++.-+- ..+.+.++.+.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI-~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGI-NLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 687777665555433 3445555332 14677655444 4578889999999988764
No 237
>PLN02591 tryptophan synthase
Probab=38.22 E-value=5e+02 Score=27.31 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=61.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE-EE--CCHHHHHHHHHHcCCCceEEEEeCCCCC---------CCHHHHHHHHhc
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL 103 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~-ta--sdg~eALe~Lre~k~~pDLVIlDI~MPd---------mDG~ELLk~Ir~ 103 (636)
|+|.|-...-.+.+...+++.+...+ .+ +..++=++.+.+.. .+.|-+ +-+.+ .+-.++++++++
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~-Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYL-VSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEE-eeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 55556555556666666677666543 22 22233445555444 333322 11111 123456778887
Q ss_pred cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
..++||++=.+-.+.+.+.+..+.||++.++-.
T Consensus 187 ~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 789999997788889999999999999999874
No 238
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=38.20 E-value=38 Score=33.35 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=26.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS 64 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tas 64 (636)
+||||||....+-..+.++|++.++++..+.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 7999999998888889999999988776655
No 239
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.15 E-value=81 Score=39.11 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=49.9
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhccCC--CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMD--LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 79 ~pDLVIlD-I~MPdmDG~ELLk~Ir~~~~--iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.+-|+|+| ++|-..+.++.+.++-+++. +.+|+. ..+...+...+...+.-|-.||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE--CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 36788887 67766666665444323333 344444 34444566777777888999999999999999988765
No 240
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=37.61 E-value=2.6e+02 Score=31.10 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=44.5
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCcEEEEe-cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~E-LLk~Ir~~~~iPVIILS-a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.+.+|++..-+..==+| ++..+. .....+|... ...+...+...++.|+++.+++|-++.+++++...+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 46666655433322233 333332 2344555433 33455667788999999999999999999988776543
No 241
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=37.58 E-value=2.6e+02 Score=31.71 Aligned_cols=100 Identities=14% Similarity=0.249 Sum_probs=62.3
Q ss_pred CccEEEEEeC---CHH-HHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006661 32 AGLRVLVVDD---DIT-CLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (636)
Q Consensus 32 ~glRVLIVDD---D~~-~re~L~~lL~~~-gy~--V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd------------m 92 (636)
.|..++.||- +.. ..+.++.+-+.+ ... +..+.+.++|..++... .|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG---ad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG---ADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCCccceecCCCc
Confidence 5788899987 433 333344433332 222 23677888888877643 687754331 11 1
Q ss_pred CHHHHHHHH---hccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 93 DG~ELLk~I---r~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
-.+.++..+ ....++|||.=..-.....+.+|+.+||+....=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 123444443 2335789888778888999999999999987764
No 242
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.30 E-value=97 Score=29.69 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=43.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC----CHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tas----dg~eALe~Lre~k~~pDLVIlDI~MPd 91 (636)
..|-+|+|+.......+-|..+|.+.+..|+.|. +..+++ ++ -|+|++-.--+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v---~~----ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV---HD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH---hh----CCEEEEecCCCC
Confidence 3678999999999999999999999999999887 444433 22 699999886663
No 243
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=37.22 E-value=2e+02 Score=36.97 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=68.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCC-CCCH-HHHHHHHhc
Q 006661 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL 103 (636)
Q Consensus 33 glRVLIV----DDD~~~re~L~~lL~~~gy~V~tas---dg~eALe~Lre~k~~pDLVIlDI~MP-dmDG-~ELLk~Ir~ 103 (636)
.-+|++. |-|.+=..++.-+|+..||+|+... ..++.++.+++.+ +|+|.+-.-|. .+.. .++++.|+.
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~ 828 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMER 828 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHh
Confidence 3478877 8888889999999999999997543 5677888887766 99999887665 3433 446677754
Q ss_pred -cCCCcEEEEecCCCHHH-HHHH-HH-cCCCeEEeCC
Q 006661 104 -EMDLPVIMMSADGRVSA-VMRG-IR-HGACDYLIKP 136 (636)
Q Consensus 104 -~~~iPVIILSa~~d~e~-v~kA-le-~GA~DYLlKP 136 (636)
..++||++=-+..+... ..+. -. .||+.|..-.
T Consensus 829 ~g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 829 QGFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred cCCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 35778777555444322 1111 11 2888777643
No 244
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=37.10 E-value=2e+02 Score=30.40 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=74.4
Q ss_pred CccEEEEEeCCHHH-------HHHHHHHHHhCCCeEEEECCHHHH-HHHHHHcCCCceEEEEeCCCCCCCHH-----HHH
Q 006661 32 AGLRVLVVDDDITC-------LRILEQMLRRCLYNVTTCSQAAVA-LDILRERKGCFDVVLSDVHMPDMDGF-----KLL 98 (636)
Q Consensus 32 ~glRVLIVDDD~~~-------re~L~~lL~~~gy~V~tasdg~eA-Le~Lre~k~~pDLVIlDI~MPdmDG~-----ELL 98 (636)
..+|+=|+-|+... .+. .+.|-+.||.|..+.+.+-. -+.+++.. =..++-+--|-.+|. ..+
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~A-ae~Lv~eGF~VlPY~~dD~v~arrLee~G---caavMPl~aPIGSg~G~~n~~~l 174 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKA-AEQLVKEGFVVLPYTTDDPVLARRLEEAG---CAAVMPLGAPIGSGLGLQNPYNL 174 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHH-HHHHHhCCCEEeeccCCCHHHHHHHHhcC---ceEeccccccccCCcCcCCHHHH
Confidence 45777777665432 222 33455569998754433322 23344322 234555555544443 456
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHH
Q 006661 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (636)
Q Consensus 99 k~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP-----i~~eeLk~~Iq~vlr 151 (636)
+.|.++.++|||+=.+-.....+..+++.|++..|+-. -++-.+.+++.+++.
T Consensus 175 ~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 175 EIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 66777779999999999999999999999999988753 456667777776654
No 245
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=37.06 E-value=39 Score=33.40 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=35.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
|||||....+-..|.++|++.+.++..+.+.+..++.+.... ||.||+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iil 49 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALK--PQKIVI 49 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCEEEE
Confidence 899999999999999999998888776665432233343333 787776
No 246
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.49 E-value=2.4e+02 Score=29.95 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=58.6
Q ss_pred cEEEEEe--CC---HHHHHHHHHHHHhCCCeEEEECCHHHHHHHH------HHcCCCceEEEEeCCCCCCCHH--HHHHH
Q 006661 34 LRVLVVD--DD---ITCLRILEQMLRRCLYNVTTCSQAAVALDIL------RERKGCFDVVLSDVHMPDMDGF--KLLEH 100 (636)
Q Consensus 34 lRVLIVD--DD---~~~re~L~~lL~~~gy~V~tasdg~eALe~L------re~k~~pDLVIlDI~MPdmDG~--ELLk~ 100 (636)
|||.|+- +. ......+..+|++.++++....+..+.+... ......+|+||+ -+.||. ++++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGTlL~a~~- 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGTILRIEH- 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHHHHHHHH-
Confidence 6787872 22 2345556666767788877653322211100 001113787776 266774 3333
Q ss_pred HhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 101 Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
+ ...++||+.+.. |-.+|+. .++++++...+.+++++.+.
T Consensus 76 ~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 76 K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDYF 115 (277)
T ss_pred h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCce
Confidence 3 234788887664 4446666 67789999999988876543
No 247
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=36.33 E-value=4.4e+02 Score=27.85 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c-C
Q 006661 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E-M 105 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~----~~g---y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~-~ 105 (636)
.|||.|+|..+.-.+..-+. ..+ .....+.+.+++++.++. .+|.|.+|-.-| +-++++.. . .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 47888887655433333332 223 233588999999988754 379999986444 33444321 1 2
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+|++ .++--+.+.+.+..+.|++.+-+
T Consensus 222 ~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 35654 45666788888889999987644
No 248
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.19 E-value=2.4e+02 Score=28.78 Aligned_cols=81 Identities=10% Similarity=0.181 Sum_probs=45.2
Q ss_pred EEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCH
Q 006661 61 TTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (636)
Q Consensus 61 ~tasdg~eALe~Lre~-k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~ 139 (636)
....+.+++++.++.. ...+. ++++-|-.-+.++.++++++...--+|=.-.--+.+.+.+++++||. |++-|.-.
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~ 86 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTT 86 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCC
Confidence 3444555555544431 11123 44455555567888888864332112223344578889999999986 66667555
Q ss_pred HHHHH
Q 006661 140 EELKN 144 (636)
Q Consensus 140 eeLk~ 144 (636)
.++.+
T Consensus 87 ~~vi~ 91 (201)
T PRK06015 87 QELLA 91 (201)
T ss_pred HHHHH
Confidence 55443
No 249
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.17 E-value=5e+02 Score=27.20 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
+++++++++..++|||....-.+.+.+.+++..||+..
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 57788887666899999999899999999999998753
No 250
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=36.02 E-value=1e+02 Score=31.37 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=43.7
Q ss_pred EEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 60 VTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 60 V~tasdg~eALe~Lre~-k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
|....+.+++++.++.. ...+. ++++-|-.-+.+++++.+++. ++ -+|=.-.-.+.+.+.+|+++||. |++-|.
T Consensus 13 Vir~~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~~p~-~~vGAGTV~~~e~a~~a~~aGA~-FivSP~ 88 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKEFPD-LLVGAGTVLTAEQAEAAIAAGAQ-FIVSPG 88 (196)
T ss_dssp EETTSSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHHHTT-SEEEEES--SHHHHHHHHHHT-S-EEEESS
T ss_pred EEEcCCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHHCCC-CeeEEEeccCHHHHHHHHHcCCC-EEECCC
Confidence 34445555555554421 11233 455656666789999888643 44 23334445678899999999996 555564
Q ss_pred CHHHHH
Q 006661 138 REEELK 143 (636)
Q Consensus 138 ~~eeLk 143 (636)
-.+++.
T Consensus 89 ~~~~v~ 94 (196)
T PF01081_consen 89 FDPEVI 94 (196)
T ss_dssp --HHHH
T ss_pred CCHHHH
Confidence 444443
No 251
>PRK14098 glycogen synthase; Provisional
Probab=35.73 E-value=3e+02 Score=31.43 Aligned_cols=112 Identities=9% Similarity=0.086 Sum_probs=59.8
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 33 GLRVLVVDD-DITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 33 glRVLIVDD-D~~~re~L~~lL~~~gy~V~ta--sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
+++++|+.+ +....+.++++..+..-.|... -+..++-+++.. .|++++=- ..+.-|+..++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS-~~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPG-KIESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCC-CCCCchHHHHHHHh--CCCCe
Confidence 466666654 3334556666655543233322 233333333332 57776422 12334555555543 44556
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|+...-.-.+.+.+..+.+..+|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 553332222333232334678999999999999999888753
No 252
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.69 E-value=56 Score=34.58 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=40.3
Q ss_pred HHHHHHHHh-ccCCCcEEEEecCC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006661 94 GFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (636)
Q Consensus 94 G~ELLk~Ir-~~~~iPVIILSa~~------d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq 147 (636)
.++++++++ ...++|+|+||=.+ -.....+|-++|+++.|+--+..+|-.....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 467788888 77899999998644 3346777889999999998777776654443
No 253
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=35.64 E-value=2.5e+02 Score=35.95 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=70.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCC-CCCH-HHHHHHHhc
Q 006661 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL 103 (636)
Q Consensus 33 glRVLIV----DDD~~~re~L~~lL~~~gy~V~tas---dg~eALe~Lre~k~~pDLVIlDI~MP-dmDG-~ELLk~Ir~ 103 (636)
.-+|++. |-|.+=..++.-+|+..||+|+... ..++.++.+++.+ +|+|-+-..|. .+.. -++++.|++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3578877 8888888999999999999998544 5677888888766 99999887665 3443 346677754
Q ss_pred -cCCCcEEEEecCCCHHHHHH---HHHcCCCeEEeCC
Q 006661 104 -EMDLPVIMMSADGRVSAVMR---GIRHGACDYLIKP 136 (636)
Q Consensus 104 -~~~iPVIILSa~~d~e~v~k---Ale~GA~DYLlKP 136 (636)
..++||++=-+-.+.++... ....||+.|..-.
T Consensus 810 ~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA 846 (1178)
T TIGR02082 810 RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDA 846 (1178)
T ss_pred cCCCceEEEeccccchhHHHhhhhhhccCCeEEecCH
Confidence 34677777665555554432 1233888777643
No 254
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=35.53 E-value=1.1e+02 Score=37.61 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=49.9
Q ss_pred CceEEEEe-CCCCCCCHHHH-HHHHhccC-CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 79 ~pDLVIlD-I~MPdmDG~EL-Lk~Ir~~~-~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.+.|+|+| ++|-...++.. ++.|.+-+ .+.+|++| .+.+.+...++.....|-.++++.++|...+.+++++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47788887 66666667764 44554432 34455555 3444577788888888989999999999888887754
No 255
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=35.34 E-value=40 Score=33.68 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 66 g~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
.+.+++.++..+ ||.|=+ ||+ =-.++++++++.-++|||.=---.+.+.+.+|+++||...
T Consensus 106 l~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 106 LETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 445677777766 998766 888 5557788877777899887555568899999999999864
No 256
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=35.31 E-value=1.8e+02 Score=31.79 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=42.4
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006661 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (636)
Q Consensus 34 lRVLIVDDD~~-----~re~L~~lL~~~gy~V~ta---------sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk 99 (636)
-|+|||-|... ..+.+++.|++.+.++..+ .+..++.+.+++.+ +|+||- ..+..-+++.|
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 48888887654 3456777787766655443 34557777777755 899885 45666667666
Q ss_pred HH
Q 006661 100 HI 101 (636)
Q Consensus 100 ~I 101 (636)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 65
No 257
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=35.06 E-value=1.1e+02 Score=33.39 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=46.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCe---E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 35 RVLVVDDDITCLRILEQMLRRC--LYN---V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~--gy~---V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
.|+++|-|....+.=+.++... +|+ | ....||...++.+.++. +|+||+|+.=|.+.+..+..+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~--~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP--FDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC--ceEEEEecCCccchHHHHHHH
Confidence 4788888887777777777653 452 3 24558888888776544 999999999898888776544
No 258
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=34.83 E-value=2.2e+02 Score=28.35 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHcCCCCCCCcccccccC---CCCCCCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC------CHHHHHHHHHHcC
Q 006661 9 QSSGGSGYGSSRAADVAV---PDQFPAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS------QAAVALDILRERK 77 (636)
Q Consensus 9 ~~~gG~~~~s~~~~d~~~---~d~fP~glRVLIVDDD~~~re~L~~lL~~~--gy~V~tas------dg~eALe~Lre~k 77 (636)
..+|+.-...+...|+.. ...-..+.+|.++-..+...+.+.+.|++. +.+|..+. +.++.++.+.+..
T Consensus 21 r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~ 100 (177)
T TIGR00696 21 KLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG 100 (177)
T ss_pred HHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC
Confidence 445665555666666642 111245689999999999999999999875 34444321 1233456666654
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 78 GCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 78 ~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
+|+|++-+-+|...-+ +.+.+.....+|++
T Consensus 101 --~dil~VglG~PkQE~~--~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 101 --AGIVFVGLGCPKQEIW--MRNHRHLKPDAVMI 130 (177)
T ss_pred --CCEEEEEcCCcHhHHH--HHHhHHhCCCcEEE
Confidence 9999999999986633 34443333344443
No 259
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=34.68 E-value=2.8e+02 Score=28.33 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=49.6
Q ss_pred eEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 59 NVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 59 ~V~tasdg~eALe~Lre~-k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
-|....+.+++++.++.. ...+.+|=+. |-.-+.++.++++++...--+|=.-.-.+.+.+.+++++||. |++-|.
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~iEit--~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~-FivsP~ 88 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVLEVT--LRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQ-FIVSPG 88 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEe--CCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCC-EEECCC
Confidence 455666777777766542 1235544444 444568888888865432112223344577889999999996 556665
Q ss_pred CHHHHHH
Q 006661 138 REEELKN 144 (636)
Q Consensus 138 ~~eeLk~ 144 (636)
...++.+
T Consensus 89 ~~~~v~~ 95 (204)
T TIGR01182 89 LTPELAK 95 (204)
T ss_pred CCHHHHH
Confidence 4444433
No 260
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=34.33 E-value=2.7e+02 Score=27.95 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC---------CCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH---HHHcCC
Q 006661 64 SQAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR---GIRHGA 129 (636)
Q Consensus 64 sdg~eALe~Lre~k~~pDLVIlDI~MPd---------mDG~ELLk~Ir~--~~~iPVIILSa~~d~e~v~k---Ale~GA 129 (636)
.+..+.++.+... .+|.|++|++-.. .+-.+++..++. .....+++=....+.....+ ++..|+
T Consensus 8 ~~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 3445556665554 4999999997544 233344444433 22345666445555555666 999999
Q ss_pred CeEEeCCC-CHHHHHHHHHHH
Q 006661 130 CDYLIKPI-REEELKNIWQHV 149 (636)
Q Consensus 130 ~DYLlKPi-~~eeLk~~Iq~v 149 (636)
++.++-=+ +.++++.+.+.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 99765444 677777776654
No 261
>PLN02476 O-methyltransferase
Probab=34.09 E-value=2e+02 Score=30.76 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=44.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEeCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V~-tasdg~eALe~Lre~--k~~pDLVIlDI~ 88 (636)
.|.+-+|.-+|-++...+..+..+++.|+. |. ...++.+.|..+... ...||+|++|..
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 344557999999999999999999998763 43 556777777655321 235999999975
No 262
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=34.04 E-value=58 Score=33.02 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=44.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCCCCCHHH--HHHHHhccCCCcE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPDMDGFK--LLEHIGLEMDLPV 109 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlD-I-~MPdmDG~E--LLk~Ir~~~~iPV 109 (636)
|||||+|........+.+.|.+.|+.+..+......+....+....+|.||+- = ..|..++.+ +++++. ..++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 68999999988888899999988887765543322111122111237766652 1 123323322 333332 235777
Q ss_pred EEEe
Q 006661 110 IMMS 113 (636)
Q Consensus 110 IILS 113 (636)
+=+-
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 6543
No 263
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=33.91 E-value=2.4e+02 Score=29.20 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=54.1
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~MPd---mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..+..+..+.+.+.. .-.|+++|+.-.. ..-++++++|.+..++||++--.-.+.+.+.+++..||+..++-
T Consensus 29 ~~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776632 2358888987543 23466788887667899999999999999999999998887664
No 264
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=33.67 E-value=4.6e+02 Score=27.31 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006661 45 CLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (636)
Q Consensus 45 ~re~L~~lL~~~gy~V~t-------asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa 114 (636)
....++..+++.+.+|.. ..+....+..++... +|+|++.. ...+...+++.++. ..+.+++..+.
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~i~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAG--PDAVVVAG--HFPDAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcC--CCEEEECC--cchhHHHHHHHHHHcCCCCCEEEEec
Confidence 345556666666666542 134445555555443 78777643 33356666666653 24455554433
No 265
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=33.60 E-value=2.3e+02 Score=28.40 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=52.4
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~MP---dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
..+..+..+.+.+.. .-.+.++|+.-- ...-+++++.+.+...+||++=..-.+.+.+.+++..||+..++--
T Consensus 29 ~~~~~~~a~~~~~~g-~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 29 SDDPVAQAKAWEDQG-AKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred cCCHHHHHHHHHHcC-CCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 347777777776542 235778887421 1244788888877678899987777888999999999998776543
No 266
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=33.17 E-value=2e+02 Score=30.15 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=44.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEeCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVH 88 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasdg~eALe~Lre~---k~~pDLVIlDI~ 88 (636)
.|.+-+|.-+|-++...+.-+..+++.|+ .|. ...++.+.|..+... ...||+|++|..
T Consensus 101 l~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 101 LPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 45567999999999999999999998874 343 566777777765432 246999999986
No 267
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.94 E-value=3.8e+02 Score=26.64 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=52.9
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 57 gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
-.-|....+.+++++.++.-- .--+=++.+.+...+..++++.+++....-.+-...--..+.+..|++.||+..+.--
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 345677888888888776521 1123456667777788888888864332211111111123678889999998777766
Q ss_pred CCHHHHH
Q 006661 137 IREEELK 143 (636)
Q Consensus 137 i~~eeLk 143 (636)
++.+.+.
T Consensus 93 ~~~~~~~ 99 (187)
T PRK07455 93 VDPELIE 99 (187)
T ss_pred CCHHHHH
Confidence 6765554
No 268
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=32.72 E-value=1.2e+02 Score=32.90 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=44.7
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHHH
Q 006661 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRK 152 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVI--ILSa~~d~e~v~kAle~GA~DYLlK-----Pi~~eeLk~~Iq~vlrk 152 (636)
-++++++++.+...+||| ....-.+.+.+..++++||+.+++= .-++.+....+..++..
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478889998776789998 5666668999999999999987543 34666666666655543
No 269
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=32.59 E-value=86 Score=31.76 Aligned_cols=53 Identities=30% Similarity=0.370 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
-++++||-|......|++-++..+. .+ ....++..+|..+... ..||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 4799999999999999999887752 22 3444555666655443 2499999995
No 270
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=32.50 E-value=5.9e+02 Score=28.00 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=37.0
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
..+++.+. ..+|||.- ... .+.+.++.|..+++..|-+.++|.+.+..++.
T Consensus 319 ~~llEAma--~G~PVI~t-~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 319 VALMEAMA--VGIPVVST-LHS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred HHHHHHHh--CCCCEEEe-CCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 44566653 46788753 222 24566788999999999999999999988765
No 271
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.49 E-value=5.1e+02 Score=27.70 Aligned_cols=92 Identities=8% Similarity=0.005 Sum_probs=59.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~----~g--y~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
.|||=|.|......+...+.. .+ ..| .+|.+.+++.+.+.. .+|.|.+|- =|.+.++++.+....
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 478888876665545554432 23 223 578899998887753 389999973 245666666433233
Q ss_pred cE-EEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 108 PV-IMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 108 PV-IILSa~~d~e~v~kAle~GA~DYLl 134 (636)
|+ |..++--+.+.+.+..+.|++..-+
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 33 3455566788888999999987543
No 272
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=32.43 E-value=1.4e+02 Score=30.74 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=43.4
Q ss_pred cEEEEEeCC------HHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006661 34 LRVLVVDDD------ITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (636)
Q Consensus 34 lRVLIVDDD------~~~re~L~~lL~~~gy~V~tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~ 106 (636)
||||++-.. ......+...|.+.|++|.... +.....+.++.. .||+|.+-.-....-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH--cC
Confidence 578887554 3466677788888898876444 333344444444 499998754333333334444432 46
Q ss_pred CcEEEE
Q 006661 107 LPVIMM 112 (636)
Q Consensus 107 iPVIIL 112 (636)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 676654
No 273
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.42 E-value=3.1e+02 Score=30.08 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=41.0
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 34 lRVLIVDDD~~----~re~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
-|+|||-|... ..+.+...|++.+..+..+. ...++++.+++.. +|.||- ..+..-+++.|.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG--CDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 37888877643 34567778877776655442 2456667776654 898875 456666676666
Q ss_pred H
Q 006661 101 I 101 (636)
Q Consensus 101 I 101 (636)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 274
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=32.40 E-value=4.9e+02 Score=27.61 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=56.8
Q ss_pred EEEEeCCHHHHHHH--HHHHH----hC--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC
Q 006661 36 VLVVDDDITCLRIL--EQMLR----RC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD 106 (636)
Q Consensus 36 VLIVDDD~~~re~L--~~lL~----~~--gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~ 106 (636)
|||-|+|......+ .+.++ .. ....+.|.+.+++.+.++. ..|.|.+|-.-|. +--++++.++.. ++
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~ 230 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPP 230 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCC
Confidence 78777775443321 11221 11 1233578899999888753 3799999955443 212344445433 35
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+|++. ++--+.+.+.+..+.|++.+..
T Consensus 231 i~i~A-sGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 231 VLLAA-AGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred ceEEE-ECCCCHHHHHHHHHcCCcEEEE
Confidence 66554 4455778888999999988744
No 275
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=32.35 E-value=2.6e+02 Score=31.06 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=53.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~-V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~-Ir~~~~iPVI 110 (636)
-+|..+|-++...+.+++-++..+.. + ....|+.+.+.. ...+|+|++|- | ..+.+++.. ++....--+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~----~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE----ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh----cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 47999999999999999888766543 2 355555554432 23499999995 4 345567666 5544455788
Q ss_pred EEecCCCH
Q 006661 111 MMSADGRV 118 (636)
Q Consensus 111 ILSa~~d~ 118 (636)
.+|+.+-.
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 88877644
No 276
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=32.25 E-value=4.1e+02 Score=28.53 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHH
Q 006661 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (636)
Q Consensus 66 g~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~ 145 (636)
.++..+.+.. .|+.++- ..++.-|+.+++.+. ..+|||. |... ...+.+..|..+++..|.+.++|.+.
T Consensus 291 ~~~~~~~l~~----adv~v~~-s~~e~~~~~llEAmA--~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 291 YDQYLALLQV----SDVHVYL-TYPFVLSWSLLEAMA--CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred HHHHHHHHHh----CcEEEEc-CcccccchHHHHHHH--CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHH
Confidence 3444455543 4665542 235555566777663 4678875 3222 24456677889999999999999999
Q ss_pred HHHHHH
Q 006661 146 WQHVVR 151 (636)
Q Consensus 146 Iq~vlr 151 (636)
+..++.
T Consensus 360 i~~ll~ 365 (396)
T cd03818 360 VIELLD 365 (396)
T ss_pred HHHHHh
Confidence 988875
No 277
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=32.24 E-value=4.3e+02 Score=27.40 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=34.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
+.+|..+|-++...+..+.-+...+..+. ..|..+.+.... ...+|+||+|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhhcchhc--CCCEeEEEECC
Confidence 36899999999998888888876665443 334433332111 13499999984
No 278
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=32.16 E-value=4.2e+02 Score=27.98 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC---CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH-HHHHHhccCC
Q 006661 35 RVLVVDDDITCLRILEQML----RRCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGLEMD 106 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL----~~~g---y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~E-LLk~Ir~~~~ 106 (636)
.|||-|+|......+...+ +..+ .....+.+.+++.+.+.. .+|.|.+|-.-| +.+. +++.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccCCC
Confidence 4777777755543333222 2222 234578899999988764 389999987544 2222 2333333234
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+| |+.++--+.+.+.+..+.||+.+.+
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 44 5566667788888999999987643
No 279
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.09 E-value=1.5e+02 Score=31.72 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=39.7
Q ss_pred HHHHHHHHh-ccCCCcEEEEecCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006661 94 GFKLLEHIG-LEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (636)
Q Consensus 94 G~ELLk~Ir-~~~~iPVIILSa~~d------~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~ 148 (636)
-+++++.++ ....+|+++|+=+.. .....+|.+.|+++.|+--+..++-......
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~ 142 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKA 142 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHH
Confidence 466777777 447899999986553 3446788999999999987777665544433
No 280
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=32.04 E-value=3.4e+02 Score=28.83 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|..+++.+. ..+|||..-.... ..+.+..|.++++..|-+.++|.+.+..++..
T Consensus 271 ~~~~lEAma--~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 271 PMTLLEAMS--YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred ChHHHHHHH--cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhC
Confidence 555666653 4678875320222 34567788999999999999999999888653
No 281
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=31.82 E-value=2.5e+02 Score=29.68 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE------EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEE
Q 006661 41 DDITCLRILEQMLRRC-LYNVT------TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 41 DD~~~re~L~~lL~~~-gy~V~------tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~~~~iPVIIL 112 (636)
|.....+.+++++... +..++ .+.+..+|++.+.+.. +|=||+-=.-+. .+|++.++++.+...-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG--~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG--VARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4466777788888765 34433 4678999999888764 898998765553 689999998854333345666
Q ss_pred ecCCCHHHHHHHHHcCCCeEE
Q 006661 113 SADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYL 133 (636)
-+--..+.+.+..+.|+..|-
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEe
Confidence 666666666666678887775
No 282
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.61 E-value=41 Score=34.93 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=40.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC--C---CeE-EEECCHHHHHHHHHHcCC-CceEEEEeCCCCCCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRC--L---YNV-TTCSQAAVALDILRERKG-CFDVVLSDVHMPDMD 93 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~--g---y~V-~tasdg~eALe~Lre~k~-~pDLVIlDI~MPdmD 93 (636)
.|...+|-+||=|+...+..++++... . -++ ....|+..-++ +... .+|+||+|..-|...
T Consensus 97 ~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~---~~~~~~yDvIi~D~~dp~~~ 164 (246)
T PF01564_consen 97 HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK---ETQEEKYDVIIVDLTDPDGP 164 (246)
T ss_dssp STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH---TSSST-EEEEEEESSSTTSC
T ss_pred cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH---hccCCcccEEEEeCCCCCCC
Confidence 344468999999999999999988653 1 123 25667665554 4333 599999999877543
No 283
>PRK05670 anthranilate synthase component II; Provisional
Probab=31.55 E-value=60 Score=31.89 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=33.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
|||+|-...+-..+.++|.+.|+.+..........+.+.... ||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALN--PDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCC--CCEEEE
Confidence 899999999999999999999988776544321122223322 787666
No 284
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=31.47 E-value=5.3e+02 Score=26.66 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|..+++.+. ..+|||.-. ... ..+.+..|..+++..|-+.++|.+.+.+++.
T Consensus 284 ~~~~~EA~a--~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 284 PVVLLEAQA--SGVPVVATR-HGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred chHHHHHHH--cCCCEEEeC-CCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 556666663 467887532 221 3444566778899999999999999988764
No 285
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=31.42 E-value=2.6e+02 Score=28.17 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=52.9
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~MPd---mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..+..++++.+.+.. .-.++++|+.--+ ..-+++++++.+...+||++=..-.+.+.+.++++.|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAKG-ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347788888776543 2258899996543 23467788887667889988777788888889999998877665
No 286
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=31.21 E-value=5.3e+02 Score=25.48 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=60.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.++++|+.+... ...++..+...+. .|......++..+.+.. .|++|.-... +.=|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 455666654332 2233334443332 33333333444444432 5777765443 223566666663 567887
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
........ .+....+..+++.++.+.+++.+.+.+++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 53322222 234556678899999999999999998864
No 287
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.14 E-value=3.1e+02 Score=30.03 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=41.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 34 lRVLIVDDD~~~----re~L~~lL~~~gy~V~tasd---------g~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
-|+|||-|.... .+.++..|+..+..+..+.. .+++.+.+++.. +|+||- ..+..-+++.|.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG--CDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcHHHHHHHH
Confidence 379999776543 45677788776666655432 446666666654 898885 456666676665
Q ss_pred H
Q 006661 101 I 101 (636)
Q Consensus 101 I 101 (636)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 5
No 288
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.13 E-value=2.4e+02 Score=29.40 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHH-HcCCCeEEe
Q 006661 66 AAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (636)
Q Consensus 66 g~eALe~Lre~k~~pDLVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAl-e~GA~DYLl 134 (636)
..+.++.+.+.. .-.++++|+.--+ +.| ++++++++....+|||.-..-.+.+.+.+++ +.|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 455556565432 2358888885432 223 6778888777789999988888999999999 789987644
No 289
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=30.98 E-value=3.4e+02 Score=26.41 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=48.3
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCC-------CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 61 ~tasdg~eALe~Lre~k~~pDLVIlDI~MPdm-------DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
..|.+.+++.++.+. .+|-|++---.|.. -|++.++++.....+||+.+-+-+ .+.+.++.+.||++.-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 478888886665533 37998887655533 389999998777779999987764 4456788899998864
No 290
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.92 E-value=2.4e+02 Score=30.41 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=49.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEE--------EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006661 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVT--------TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (636)
Q Consensus 34 lRVLIVDDD~~---~re~L~~lL~~~gy~V~--------tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir 102 (636)
-|+|||-|... ..+.+...|+..+..+. ...+..++.+.+++.+ +|+||- +.+..-+++.+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNG--ADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcC--CCEEEE---ecCchhhHHHHHHH
Confidence 58888887644 34445555655554432 1234556666766654 898876 67878888888876
Q ss_pred ccCCCcEEEEec
Q 006661 103 LEMDLPVIMMSA 114 (636)
Q Consensus 103 ~~~~iPVIILSa 114 (636)
....+|+|.+-.
T Consensus 98 ~~~~~P~iaIPT 109 (351)
T cd08170 98 DYLGAPVVIVPT 109 (351)
T ss_pred HHcCCCEEEeCC
Confidence 556788887644
No 291
>CHL00101 trpG anthranilate synthase component 2
Probab=30.92 E-value=58 Score=32.21 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=34.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
|||||....+-..|.+.|++.+..+..+......+..+... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999988887766443222223222 3787775
No 292
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.73 E-value=4.6e+02 Score=26.48 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe------
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------ 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~MP---dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl------ 134 (636)
+..+..+.+.... ++ ++++|+..- ..-.+++++++....++|||+-..-.+.+.+.+.++.||+..++
T Consensus 150 ~~~~~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEELG--AGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 4455555554432 44 666676321 22347888888776789999988888888898999999998654
Q ss_pred CCCCHHHHH
Q 006661 135 KPIREEELK 143 (636)
Q Consensus 135 KPi~~eeLk 143 (636)
.|+..++++
T Consensus 228 ~~~~~~~~~ 236 (241)
T PRK13585 228 GKFTLEEAI 236 (241)
T ss_pred CCcCHHHHH
Confidence 355544444
No 293
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=30.71 E-value=1.6e+02 Score=29.53 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCCCcEEEEecC----------CCHHHHHHHHHcCCCeEEe
Q 006661 94 GFKLLEHIGLEMDLPVIMMSAD----------GRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~----------~d~e~v~kAle~GA~DYLl 134 (636)
+++.++.++...++|+|.++.. ...+.+.++.++||+ +++
T Consensus 44 ~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~ 93 (221)
T PRK01130 44 GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIA 93 (221)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEE
Confidence 3778888876668888755432 234568899999998 554
No 294
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=30.71 E-value=3.6e+02 Score=29.36 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=42.5
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006661 34 LRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (636)
Q Consensus 34 lRVLIVDDD~~~-----re~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk 99 (636)
-|+|||-|.... .+.+...|+..+.++..+. +..++.+.+++.. +|+||- ..+..-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 589999877552 2567788877766655443 3456677777655 898886 56766677777
Q ss_pred HH
Q 006661 100 HI 101 (636)
Q Consensus 100 ~I 101 (636)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 54
No 295
>PRK08185 hypothetical protein; Provisional
Probab=30.57 E-value=1.8e+02 Score=31.23 Aligned_cols=84 Identities=18% Similarity=0.373 Sum_probs=58.3
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---C-------CCCCCHHHHHHHHhccCCCcEEEEecCC-CHHHHHHHHHcCCCe
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDV---H-------MPDMDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACD 131 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI---~-------MPdmDG~ELLk~Ir~~~~iPVIILSa~~-d~e~v~kAle~GA~D 131 (636)
.++.++|.+.++... +|.+-.-+ | -|+.+ +++++.|++..++|+++.-+.. ..+.+.+|++.|++-
T Consensus 148 ~t~peea~~f~~~Tg--vD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRTG--VDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 558889999887654 78777733 1 25566 9999999877789999886664 566788899999764
Q ss_pred EEeCCCCHHHHHHHHHHHHHHh
Q 006661 132 YLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 132 YLlKPi~~eeLk~~Iq~vlrkk 153 (636)
.=+ -.+|+..+...++..
T Consensus 225 iNi----~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 225 INI----SSDMKYAFFKKVREI 242 (283)
T ss_pred EEe----ChHHHHHHHHHHHHH
Confidence 322 245655555555543
No 296
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=30.52 E-value=1.6e+02 Score=28.68 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCC--CCCHHHHHHHHhcc-CCCcEEEE--ecCCCHHHHHHHHHcCCCeEEeCCCC-
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLE-MDLPVIMM--SADGRVSAVMRGIRHGACDYLIKPIR- 138 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MP--dmDG~ELLk~Ir~~-~~iPVIIL--Sa~~d~e~v~kAle~GA~DYLlKPi~- 138 (636)
+.+++++.++.....++ .+.+.+| .-.|+++++.+++. .++|+++. ..+.....+..+.++||+..+.-...
T Consensus 11 ~~~~~~~~~~~l~~~i~--~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDGVD--IIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhcCC--EEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 45555555554432223 3444333 23578889888764 57887763 23233234577889999877654433
Q ss_pred HHHHHHHHHH
Q 006661 139 EEELKNIWQH 148 (636)
Q Consensus 139 ~eeLk~~Iq~ 148 (636)
.+.+...++.
T Consensus 89 ~~~~~~~i~~ 98 (202)
T cd04726 89 LSTIKKAVKA 98 (202)
T ss_pred HHHHHHHHHH
Confidence 2334444443
No 297
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=30.44 E-value=3.4e+02 Score=29.93 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=42.4
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 34 lRVLIVDDD~~----~re~L~~lL~~~gy~V~ta---------sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
-|+|||-|... ..+.++..|++.+..+..+ ++.+++.+.+++.+ +|.||- ..+..-++..|.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 48999977633 3456777887766655443 34557777777765 999885 456666777666
Q ss_pred H
Q 006661 101 I 101 (636)
Q Consensus 101 I 101 (636)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 5
No 298
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.43 E-value=4.8e+02 Score=26.66 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=58.6
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-Cc-EEE-EecCCCHHHHHHHHH
Q 006661 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-LP-VIM-MSADGRVSAVMRGIR 126 (636)
Q Consensus 51 ~lL~~~g-y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~-iP-VII-LSa~~d~e~v~kAle 126 (636)
+.|.+.+ .-|....+.++++..++... .--+=++++-|-.-+.++.++.+++... -| +++ .-.-.+.+.+.+|++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3444433 45667778888887776432 1233456666666779999999965432 22 433 344457888999999
Q ss_pred cCCCeEEeCCCCHHHHHHH
Q 006661 127 HGACDYLIKPIREEELKNI 145 (636)
Q Consensus 127 ~GA~DYLlKPi~~eeLk~~ 145 (636)
+||. |++-|.-.+++.+.
T Consensus 87 aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred cCCC-EEECCCCCHHHHHH
Confidence 9996 66667655555443
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.36 E-value=3.9e+02 Score=29.83 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=49.3
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC-CCCCCHH--HHHHHHhc-c-C
Q 006661 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-MPDMDGF--KLLEHIGL-E-M 105 (636)
Q Consensus 34 lRVLIVDDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~-MPdmDG~--ELLk~Ir~-~-~ 105 (636)
.+|.++..|.. -.+.|+.+-+..+..+..+.+..+....+.+.. ..|+||+|.- +...|.. +.+..+.. . .
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47877776654 345566556666777776766655555555433 4799999973 2223332 33333321 1 1
Q ss_pred CCcEEEEecCCCHHHH
Q 006661 106 DLPVIMMSADGRVSAV 121 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v 121 (636)
.-.++++++....+.+
T Consensus 247 ~~~lLVLsAts~~~~l 262 (374)
T PRK14722 247 VQRLLLLNATSHGDTL 262 (374)
T ss_pred CeEEEEecCccChHHH
Confidence 2237777777665443
No 300
>PRK05637 anthranilate synthase component II; Provisional
Probab=30.20 E-value=85 Score=31.83 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=35.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
-||+|||...-+...+.+.|++.++.+..+..... ++.+.... ||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~~--~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAAN--PDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhcC--CCEEEE
Confidence 47999999999999999999999887776654322 23333323 787777
No 301
>PLN02335 anthranilate synthase
Probab=29.60 E-value=60 Score=33.16 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=33.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
..+|||||....+-..|.+.|++.++.+.++......++.+.... ||.||+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~--~d~iVi 68 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKN--PRGVLI 68 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcC--CCEEEE
Confidence 458999997777777899999998887776554211123233323 776666
No 302
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.34 E-value=4.7e+02 Score=28.21 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+++++|++..++||+......+.+.+.++++.|.+|++-
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4677788877789999988888999999999999888753
No 303
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=29.32 E-value=1.2e+02 Score=29.07 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=35.1
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 31 P~glRVLIVDDD~~~---------re~L~~lL~~~-gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
+..++|.|||.|... -+.+.+.|... .+.+.. .+.++|.+.++..+ ++.+|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcCc--EEEEEE
Confidence 467899999988654 34455555543 445443 48899999998765 776654
No 304
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.98 E-value=2.2e+02 Score=27.95 Aligned_cols=86 Identities=22% Similarity=0.255 Sum_probs=47.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHH--cCCCceEEEEeC-CCCCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRE--RKGCFDVVLSDV-HMPDM 92 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~---------------V~tasdg~eALe~Lre--~k~~pDLVIlDI-~MPdm 92 (636)
-+++||||+..-....+.+.+.|+...+. |.....+ .....+.. ....+|+||+|= |.-|-
T Consensus 31 ~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a-t~~~~~~~p~~~~~yd~II~DEcH~~Dp 109 (148)
T PF07652_consen 31 KRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA-TYGHFLLNPCRLKNYDVIIMDECHFTDP 109 (148)
T ss_dssp HTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH-HHHHHHHTSSCTTS-SEEEECTTT--SH
T ss_pred HccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH-HHHHHhcCcccccCccEEEEeccccCCH
Confidence 36899999999999999999999865322 2222233 33343332 112489999985 33332
Q ss_pred CHHHH---HHHHhccCCCcEEEEecCCC
Q 006661 93 DGFKL---LEHIGLEMDLPVIMMSADGR 117 (636)
Q Consensus 93 DG~EL---Lk~Ir~~~~iPVIILSa~~d 117 (636)
..+-+ ++.+.......+|+||+...
T Consensus 110 ~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 110 TSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred HHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 23322 33333334568999998753
No 305
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=28.80 E-value=2.4e+02 Score=27.59 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=57.1
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh---ccCCCcEEEEecCCCH
Q 006661 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (636)
Q Consensus 49 L~~lL~~~gy~V~t--asdg~eALe~Lre~k~~pDLVIlDI~MPd-----mDG~ELLk~Ir---~~~~iPVIILSa~~d~ 118 (636)
+.+.|+..|+.+.. +..+...++.+.... ||.|-+|..+.. .....+++.+. ...+++| +.+.-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKV-VAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeE-EEEecCCH
Confidence 44445666887764 456666777777665 999999965431 22345555542 2345544 45677778
Q ss_pred HHHHHHHHcCCC----eEEeCCCCHH
Q 006661 119 SAVMRGIRHGAC----DYLIKPIREE 140 (636)
Q Consensus 119 e~v~kAle~GA~----DYLlKPi~~e 140 (636)
+....+.+.|++ .|+-||...+
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCCC
Confidence 888888899985 3566776543
No 306
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=28.78 E-value=5.2e+02 Score=27.95 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=38.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC-----eEEEECCHHHHHHHHHHcCCCceEEEEe
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY-----NVTTCSQAAVALDILRERKGCFDVVLSD 86 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy-----~V~tasdg~eALe~Lre~k~~pDLVIlD 86 (636)
|...=|||=+|-|+..++.=-..-++.+. .|..-.-++...+++++.+ |||+++-
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViT 160 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVIT 160 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEEe
Confidence 44445899999999877766666556543 3445556667777888776 9988763
No 307
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=28.75 E-value=2.7e+02 Score=28.32 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCce-EEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc-CCCeEEe
Q 006661 68 VALDILRERKGCFD-VVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI 134 (636)
Q Consensus 68 eALe~Lre~k~~pD-LVIlDI~M---PdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~-GA~DYLl 134 (636)
+..+.+.+. .+| +++.++.- ...-.++++++++...++|||..-.-.+.+.+.++++. |++..++
T Consensus 153 ~~~~~l~~~--G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEEL--GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHC--CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 333444433 367 66656542 11223788888876678999998888899999999987 8887655
No 308
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.71 E-value=1.1e+02 Score=30.55 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
|||+|+|-.--....+.+.|++.|+++....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 68999999998889999999999999888775432 21 3788877
No 309
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=28.65 E-value=3.8e+02 Score=31.24 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=39.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 79 CFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 79 ~pDLVIlDI~MPdmDG~ELLk~Ir--~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
.+|+||+ -+.||- +|+..+ ....+||+=+ ..|-.+||. ++..+++...+..++++.+.
T Consensus 262 ~~DlVIs----iGGDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~y~ 321 (508)
T PLN02935 262 KVDLVIT----LGGDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGPIS 321 (508)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCCce
Confidence 3677776 367774 333333 2346787643 467788985 78999999999999876543
No 310
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=28.56 E-value=1.5e+02 Score=28.17 Aligned_cols=53 Identities=26% Similarity=0.245 Sum_probs=28.3
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEE---CCHHHHH----HHHHHcCCCceEEEEeC
Q 006661 33 GLRVLVVDDDITCL---RILEQMLRRCLYNVTTC---SQAAVAL----DILRERKGCFDVVLSDV 87 (636)
Q Consensus 33 glRVLIVDDD~~~r---e~L~~lL~~~gy~V~ta---sdg~eAL----e~Lre~k~~pDLVIlDI 87 (636)
+.+|+++|-|..-. +.+..+..+.+..+... .+..+.+ ..+.. ..+|+||+|.
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt 90 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDT 90 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 67899999775322 22333333435444443 2333322 22222 3489999997
No 311
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=28.56 E-value=5.8e+02 Score=30.07 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHH---hccCCCcEEEEecCCC
Q 006661 48 ILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHI---GLEMDLPVIMMSADGR 117 (636)
Q Consensus 48 ~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MP-----dmDG~ELLk~I---r~~~~iPVIILSa~~d 117 (636)
.....|++.|+.+. -+.++...+..+.... ||.|=+|-.+- +.....+++.| ....++.|| ...-.+
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~ 758 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVET 758 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 34445777788875 4667778888887765 99999997542 12234455554 233455554 556677
Q ss_pred HHHHHHHHHcCCC----eEEeCCCCHHHHHHHHHH
Q 006661 118 VSAVMRGIRHGAC----DYLIKPIREEELKNIWQH 148 (636)
Q Consensus 118 ~e~v~kAle~GA~----DYLlKPi~~eeLk~~Iq~ 148 (636)
.+....+.+.|++ .|+.||...++|...++.
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 7778888899997 368899999999875543
No 312
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.49 E-value=6.6e+02 Score=26.57 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC-
Q 006661 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM- 105 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~----~~g---y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~- 105 (636)
-|||.|++..+.-.+..-+. ..+ ...+.|.+.+++.+.+.. .+|.|.+|-.- .+.++++.. ..
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~-----~e~l~~~~~~~~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMS-----PEELREAVALLKG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcC-----HHHHHHHHHHcCC
Confidence 47888887655433332222 222 233588999999888753 38999998532 455555532 22
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
++|++. ++--+.+.+.+..+.|++.+
T Consensus 226 ~ipi~A-iGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 226 RVLLEA-SGGITLENIRAYAETGVDYI 251 (268)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEE
Confidence 466554 45556788888889999875
No 313
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=28.41 E-value=3.2e+02 Score=29.74 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 34 LRVLVVDDDITCL----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 34 lRVLIVDDD~~~r----e~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
-|++||-|..... +.+...|+..++.+..+. +..++++.+++.. +|+||- +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG--CDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 3788887765433 567777777666554432 2445666666554 898775 566666777766
Q ss_pred H
Q 006661 101 I 101 (636)
Q Consensus 101 I 101 (636)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 5
No 314
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=28.33 E-value=5e+02 Score=27.81 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=59.2
Q ss_pred EEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH-------HHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006661 35 RVLVV--DDDITC---LRILEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (636)
Q Consensus 35 RVLIV--DDD~~~---re~L~~lL~~~gy~V~tasdg~eALe~-------Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir 102 (636)
+|+|+ .+.+.. .+.+.+.|++.++++.........+.. .++....+|+||+ -+.||- +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 37776 333433 455555566668877654432221110 1111223788887 366774 334333
Q ss_pred c--cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 103 ~--~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
. ..++|++=+. .|=.+||. .+..+++...+.+++++.+
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 2 3567877543 46668888 7889999999999887654
No 315
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=28.28 E-value=2.5e+02 Score=28.71 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 64 SQAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 64 sdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+..+.++.+.+.. .-.+|++|+.--+ +.| ++++++++...++|+|.--+-.+.+.+.++.+.|+++.++
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 45677777776653 3579999997554 333 5678888666699999988888999999999999988776
No 316
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=28.24 E-value=5.4e+02 Score=26.93 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=75.3
Q ss_pred CccEEEEEeCCHHHHH--HHHHHHHhCCC----eEEEECCHHHHHHHHHHcCCCceEEEEeC-------CCCCCCHHHHH
Q 006661 32 AGLRVLVVDDDITCLR--ILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDV-------HMPDMDGFKLL 98 (636)
Q Consensus 32 ~glRVLIVDDD~~~re--~L~~lL~~~gy----~V~tasdg~eALe~Lre~k~~pDLVIlDI-------~MPdmDG~ELL 98 (636)
.|..|+.+|-...-|- .+.+++.+..| -...|++.+|++...+. .+|+|=+-+ .-|...-|+++
T Consensus 97 ~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lv 173 (229)
T COG3010 97 AGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLV 173 (229)
T ss_pred CCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHH
Confidence 3566777775422111 34444444322 23468899999887654 378764422 23445568999
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC-C-CHHHHHHHHHHH
Q 006661 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-I-REEELKNIWQHV 149 (636)
Q Consensus 99 k~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP-i-~~eeLk~~Iq~v 149 (636)
+.+.. .+.+||.=--++..+.+.++++.||+..++-- + +++++......+
T Consensus 174 k~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~~ 225 (229)
T COG3010 174 KQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVDA 225 (229)
T ss_pred HHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHHH
Confidence 99865 78899998888999999999999999987764 2 455655544443
No 317
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=28.10 E-value=1.3e+02 Score=31.82 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCC
Q 006661 72 ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (636)
Q Consensus 72 ~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~ 138 (636)
++++.. ||++|.=---|..-|-.-.+.+-...++|.|++|...... ..++++..-.+||+-+.+
T Consensus 54 ~~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 54 MLKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 344555 8988886555667788888887667899999999765554 467888888888776544
No 318
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=27.85 E-value=8.4e+02 Score=26.76 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=61.6
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC-----------CC--H
Q 006661 35 RVLVVDDD----ITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD--G 94 (636)
Q Consensus 35 RVLIVDDD----~~~re~L~~lL~~~g-y~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPd-----------mD--G 94 (636)
.++++|-- ....+.++.+-+... ..|. .+.+.+.|..+++. ..|.|..-+.-.. .- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 56666652 444555555444432 2222 24577777776653 2677764421111 11 3
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+..+..++...++|||.-.+-....++.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 55666666556799999999999999999999999987654
No 319
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=27.79 E-value=3.9e+02 Score=26.30 Aligned_cols=69 Identities=7% Similarity=-0.031 Sum_probs=50.5
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 61 ~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..+.+.+|+.+.++. .+|.|-++- .+.. |.++++.++.. +.+|++.+.+- +.+.+.+.++.|++....-
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 456688998887753 379988853 3333 99999998654 46887776655 7788999999998776544
No 320
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.79 E-value=3e+02 Score=32.36 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=28.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.|++++-+.-+ .+-..++..+|+ .++++||.-+. +.+...+..+.||+..+.
T Consensus 465 A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 465 AEAIVITCNEP-EDTMKIVELCQQHFPHLHILARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCCEEEc
Confidence 55555543222 223344555553 45666666443 445566777888876654
No 321
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.78 E-value=6.6e+02 Score=26.97 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=60.5
Q ss_pred CCccEEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHHcCCCceEEEEeCCCCCCCHH--H
Q 006661 31 PAGLRVLVV--DDDIT---CLRILEQMLRRCLYNVTTCSQAAVALD-----I--LRERKGCFDVVLSDVHMPDMDGF--K 96 (636)
Q Consensus 31 P~glRVLIV--DDD~~---~re~L~~lL~~~gy~V~tasdg~eALe-----~--Lre~k~~pDLVIlDI~MPdmDG~--E 96 (636)
|...+|.|+ .+.+. ..+.+.+.|++.++++.......+.+. . .......+|+||+ -+.||. .
T Consensus 2 ~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt~l~ 77 (295)
T PRK01231 2 PSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGSLLG 77 (295)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHHHHH
Confidence 444468887 23333 344556666677888765443222111 0 0111123788776 266773 3
Q ss_pred HHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 97 LLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 97 LLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
+++.+. ..++||+-+.. |=.+||. .++.+++..++..++++.+
T Consensus 78 ~~~~~~-~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 78 AARALA-RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHHHhc-CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCCc
Confidence 333332 35788876543 5567774 6889999999999987654
No 322
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=27.72 E-value=3.9e+02 Score=26.46 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=44.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~--V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
+|..||.++...+.+++-++..++. + ....|..+++..+......+|+|++|=-.....--++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999999988877653 3 35556656665433221237999999644433334455555
No 323
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.70 E-value=1.4e+02 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=14.4
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE
Q 006661 38 VVDDDITCLRILEQMLRRCLYNVTT 62 (636)
Q Consensus 38 IVDDD~~~re~L~~lL~~~gy~V~t 62 (636)
+-|.+......+...|...||.+..
T Consensus 6 v~d~~K~~~~~~a~~l~~~G~~i~A 30 (112)
T cd00532 6 VSDHVKAMLVDLAPKLSSDGFPLFA 30 (112)
T ss_pred EEcccHHHHHHHHHHHHHCCCEEEE
Confidence 3344555555555666666887753
No 324
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=27.50 E-value=7.3e+02 Score=25.93 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=59.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC--C
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--D 106 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g--y~V~ta--sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~--~ 106 (636)
.+||.||----.........+.... ..+..+ .+.+.|.+..++.. +.-+..| .+.+-..+ +
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCC
Confidence 4788888766554444444444433 344433 34444444444332 2212222 22332223 3
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vl 150 (636)
+-+|......-.+.+.+|+++|..=|+-||+ +.+|..++++.+-
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 3334444455678899999999999999996 6788886666543
No 325
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.23 E-value=4e+02 Score=27.52 Aligned_cols=98 Identities=9% Similarity=-0.002 Sum_probs=59.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE 104 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd--------mDG~ELLk~Ir~~ 104 (636)
|++.|-+....+.+...+++.+..... -.+..+.++.+.... .|.|++=-.+|. .+..+.++++++.
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 444455555555566666666654432 223345555555433 344333112331 2345777888777
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
.++||++=.+-.+.+.+.++.++ |+.+++-.
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 78999997777788889999999 99999863
No 326
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.11 E-value=2.8e+02 Score=28.56 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHH-hccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~I-r~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..++++.+.+.. -.+|++|+.--+ +.|++ .+ +...++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4456666666542 479999997765 47777 33 222579999988888999999999999998665
No 327
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.10 E-value=4.3e+02 Score=23.11 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=45.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~ 115 (636)
|+||.-...-+..++.+.+ .++.|+..+.-.+..+.+++.. ++++.-|. .-.+.++++... +...++++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~-----~~~~~l~~a~i~-~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEG--VEVIYGDA-----TDPEVLERAGIE-KADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTT--SEEEES-T-----TSHHHHHHTTGG-CESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcc--cccccccc-----hhhhHHhhcCcc-ccCEEEEccC
Confidence 6788888888877777777 5677877777777777777654 67666654 335666766432 3334444444
Q ss_pred CCH
Q 006661 116 GRV 118 (636)
Q Consensus 116 ~d~ 118 (636)
++.
T Consensus 72 ~d~ 74 (116)
T PF02254_consen 72 DDE 74 (116)
T ss_dssp SHH
T ss_pred CHH
Confidence 443
No 328
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=27.09 E-value=1.9e+02 Score=30.71 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCeEEEECCH-----HHHH---H-HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc
Q 006661 57 LYNVTTCSQA-----AVAL---D-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH 127 (636)
Q Consensus 57 gy~V~tasdg-----~eAL---e-~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~ 127 (636)
+..+..+.+| +++- . ++++.. ||++|.=---|..-|-.-.+++-+..++|.|++|........ ++++.
T Consensus 31 dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l~~ 107 (277)
T PRK00994 31 DIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAMEE 107 (277)
T ss_pred CceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHHHh
Confidence 5666665543 2222 2 334444 898887554555667777777766678999999977666544 77877
Q ss_pred CCCeEEeCCCC
Q 006661 128 GACDYLIKPIR 138 (636)
Q Consensus 128 GA~DYLlKPi~ 138 (636)
.-.+||+-+.+
T Consensus 108 ~g~GYIivk~D 118 (277)
T PRK00994 108 QGLGYIIVKAD 118 (277)
T ss_pred cCCcEEEEecC
Confidence 77788765543
No 329
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=27.08 E-value=3.1e+02 Score=29.84 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=41.3
Q ss_pred EEEEEeCCHH-HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 35 RVLVVDDDIT-CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 35 RVLIVDDD~~-~re~L~~lL~~~gy~V~ta---------sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
|+|||-|... ....+...|+..+..+..+ ++..++++.+++.. +|+||- +.+..-+++.+.+
T Consensus 25 ~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 25 RVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG--PDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred eEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCCcHHHHHHHHH
Confidence 7888877644 4667888888776655433 23556777777654 898875 5666666766665
No 330
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=27.02 E-value=7.5e+02 Score=25.94 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCH------
Q 006661 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE------ 139 (636)
Q Consensus 66 g~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~------ 139 (636)
..+..+.+.. .|++++=.. .+.-|+-+++.+. ..+|||.. ... ...+.++.|..+++.++-+.
T Consensus 271 ~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a--~G~PvI~s-~~~---~~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 271 KEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA--CGTPVVAS-ATG---GIPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred HHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--cCCCEEEe-CCC---CHHHHhhCCCceEEcCCCCCcccchH
Confidence 4444444432 577665321 2334566666653 46788763 222 24455677888999999887
Q ss_pred HHHHHHHHHHHH
Q 006661 140 EELKNIWQHVVR 151 (636)
Q Consensus 140 eeLk~~Iq~vlr 151 (636)
++|.+.+.+++.
T Consensus 340 ~~l~~~i~~l~~ 351 (388)
T TIGR02149 340 AELAKAINILLA 351 (388)
T ss_pred HHHHHHHHHHHh
Confidence 788888877654
No 331
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=26.95 E-value=6.2e+02 Score=24.97 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=40.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.|++|.-... +.-|..+++.+. ..+|||.... .. ..+.+..+-.+++..+.+.+++.+.+.+++.
T Consensus 276 ~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 276 ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 3666653322 333455566553 4577775332 22 3344556788899999999999999988754
No 332
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.92 E-value=6.7e+02 Score=26.25 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=60.0
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 34 lRVLIVDDD--~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
|++.|+..+ ....+.++..|.+.+..+....+.. ......|+||+ -+.||. +++.++.. ++||+=
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 455565433 4455666777777777766554422 11224788887 367875 44445444 888876
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
+. .|-.+||. .++.+++..++.++.++.+.
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~~~ 97 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWNFR 97 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCCcE
Confidence 55 35567887 68889999999988776543
No 333
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.84 E-value=7.9e+02 Score=26.63 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=60.9
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEeCCCCCC
Q 006661 34 LRVLVVD--DDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDM 92 (636)
Q Consensus 34 lRVLIVD--DD~~---~re~L~~lL~~~gy~V~tasdg~eALe~----------------Lre~k~~pDLVIlDI~MPdm 92 (636)
.+|+|+- +.+. ..+.+..+|.+.+++|.........+.. .......+|+||+ -+.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 4577772 3333 3455666666678887765543322210 0111123677776 267
Q ss_pred CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 93 DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 93 DG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
|| +..++.+. ..++||+=+- .|-.+||.- +..+++..++++++++.+.
T Consensus 82 DGT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 82 DGTILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDYR 131 (306)
T ss_pred CHHHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCce
Confidence 88 33444432 3568887554 367788885 7789999999999876543
No 334
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.77 E-value=2.1e+02 Score=30.98 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=49.2
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 33 glRVLIVDDD~~~---re~L~~lL~~~gy~V~ta---------sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
+-|+|||-|.... .+.+...|+..+..+..+ .+..++.+..++.+ +|+||- +.+..-+++.+.
T Consensus 22 ~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~iia---vGGGs~~D~aK~ 96 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQE--ADMIFA---VGGGKAIDTVKV 96 (345)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcC--CCEEEE---eCCcHHHHHHHH
Confidence 3588988886543 455666676655544322 23345555555544 898886 567778888888
Q ss_pred HhccCCCcEEEEec
Q 006661 101 IGLEMDLPVIMMSA 114 (636)
Q Consensus 101 Ir~~~~iPVIILSa 114 (636)
+.....+|+|.+-.
T Consensus 97 ia~~~~~p~i~VPT 110 (345)
T cd08171 97 LADKLGKPVFTFPT 110 (345)
T ss_pred HHHHcCCCEEEecC
Confidence 86555778887654
No 335
>PLN00191 enolase
Probab=26.65 E-value=4.6e+02 Score=30.11 Aligned_cols=108 Identities=14% Similarity=0.231 Sum_probs=67.9
Q ss_pred EeCCHHHHHHHHHHHHhCCCe----------------------EE---------EECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 39 VDDDITCLRILEQMLRRCLYN----------------------VT---------TCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 39 VDDD~~~re~L~~lL~~~gy~----------------------V~---------tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
++++...++.+.+.+.+.||+ +. ..-+.++++++++.....++++.+.=
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 456677778888888765553 10 11277888888887555578877765
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEec-CCCHHHHHHHHHcCCCeE-EeCCCCHHHHHHHHH
Q 006661 88 HMPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDY-LIKPIREEELKNIWQ 147 (636)
Q Consensus 88 ~MPdmDG~ELLk~Ir~~~~iPVIILSa-~~d~e~v~kAle~GA~DY-LlKPi~~eeLk~~Iq 147 (636)
-++. +.++-.++|++...+||+.==. ..+...+.++++.+++++ ++|+-..--|..+++
T Consensus 319 Pl~~-~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~ 379 (457)
T PLN00191 319 PFDQ-DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIE 379 (457)
T ss_pred CCCc-ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHH
Confidence 4544 3366667776555666543111 144677889998888775 788865554444444
No 336
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=26.56 E-value=5.9e+02 Score=27.01 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=46.9
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~M-----PdmDG~ELLk~Ir~~--~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+.+.++|..+.+. ..|.|.+.-+- .+...++++.++++. .++|||.-..-.+...+.+++.+||+...+=
T Consensus 180 v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3455555444432 36777765432 123456777777543 2699999989999999999999999987553
No 337
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=26.49 E-value=5.3e+02 Score=29.01 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=36.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eE-------------------EEECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NV-------------------TTCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy-~V-------------------~tasdg~eALe~Lre~k~~pDLVIlDI~MPd 91 (636)
..||||||..--.--....++.+.-.+ .+ ....|.++.++.+++.. +|+|+....-|-
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~--iD~Vv~g~E~~l 80 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNP--FDLIVVGPEDPL 80 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcC--CCEEEECCchHH
Confidence 458999998876555555554443111 11 11246666677777655 999998765544
Q ss_pred CCHH
Q 006661 92 MDGF 95 (636)
Q Consensus 92 mDG~ 95 (636)
..|+
T Consensus 81 ~~gl 84 (426)
T PRK13789 81 VAGF 84 (426)
T ss_pred HHHH
Confidence 4443
No 338
>PRK04457 spermidine synthase; Provisional
Probab=26.47 E-value=6.9e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=37.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g--y~V~-tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
+.+|.+||=|+...+..++.+.... -.+. ...|+.+.++. ....+|+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeC
Confidence 5789999999999999888875432 2343 45677766553 234599999996
No 339
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=26.13 E-value=4.9e+02 Score=27.10 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=60.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.+++|+.+.+.. +.+++.+ .....+.-.-+.++..+.+.. .|++++-.. +.-|+-+++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 567777666532 2233311 111222223345556666643 477665433 334555666553 467888753
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
... ..+.+..|..+++..|-+.++|.+.+..++..
T Consensus 292 ~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 292 KGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 322 23445667789999999999999999887653
No 340
>PRK00077 eno enolase; Provisional
Probab=26.02 E-value=5e+02 Score=29.25 Aligned_cols=105 Identities=15% Similarity=0.269 Sum_probs=61.2
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEEC--------------------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHH
Q 006661 40 DDDITCLRILEQMLRRCLYN----VTTCS--------------------QAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~----V~tas--------------------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ 95 (636)
+++...++.+++.++..+|+ |..+- +.+++++.+......++++.+.==++..| +
T Consensus 213 ~~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D-~ 291 (425)
T PRK00077 213 KSNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIEDGLDEND-W 291 (425)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCcc-H
Confidence 56677778888888777654 22222 33455555554333477777765454433 5
Q ss_pred HHHHHHhccC--CCcEEEEecC---CCHHHHHHHHHcCCCeE-EeCCCCHHHHHHHHH
Q 006661 96 KLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIREEELKNIWQ 147 (636)
Q Consensus 96 ELLk~Ir~~~--~iPVIILSa~---~d~e~v~kAle~GA~DY-LlKPi~~eeLk~~Iq 147 (636)
+-.++|+... .+||+ ... .+.....++++.+++++ ++|+-..--|..+++
T Consensus 292 ~g~~~L~~~~~~~ipI~--gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ 347 (425)
T PRK00077 292 EGWKLLTEKLGDKVQLV--GDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLD 347 (425)
T ss_pred HHHHHHHHhcCCCCeEE--cCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHH
Confidence 5555565433 35543 333 24778888898887775 788866544444443
No 341
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=25.92 E-value=3.5e+02 Score=29.11 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=53.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH----------
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK---------- 96 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~t-------asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~E---------- 96 (636)
|+|||.-+.=-.-..|.+.|. .+++|+. ..+.+...+.+++.+ ||+||--.-+...|.-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~--PDvVIn~AAyt~vD~aE~~~e~A~~vN 77 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR--PDVVINAAAYTAVDKAESEPELAFAVN 77 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC--CCEEEECccccccccccCCHHHHHHhH
Confidence 568999998877788888887 4566653 456777888888776 99999655555444322
Q ss_pred -----HHHHHhccCCCcEEEEecC
Q 006661 97 -----LLEHIGLEMDLPVIMMSAD 115 (636)
Q Consensus 97 -----LLk~Ir~~~~iPVIILSa~ 115 (636)
-+.++......++|.+|.+
T Consensus 78 a~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 78 ATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred HHHHHHHHHHHHHhCCeEEEeecc
Confidence 1222223456788888853
No 342
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.88 E-value=3.9e+02 Score=27.84 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=54.4
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~MPd---mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..++.+..+.+.... .-.|+++|+.--+ ..-++++++|.....+||++=..-.+.+.+.+.+..|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 447777777776543 2369999997664 23378999997667899988777788899999999999987764
No 343
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.75 E-value=9.3e+02 Score=27.01 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=53.8
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCHHH---HHHHHhc
Q 006661 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFK---LLEHIGL 103 (636)
Q Consensus 32 ~glRVLIVDDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~--MPdmDG~E---LLk~Ir~ 103 (636)
.+.+|.+|+-|+. ..+.|+.+.+..+..+..+.+..+..+.+... ..+|+||+|.- ++ .|-.. +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 4678999988853 23334444444566777777776666655554 35899999973 32 23332 2222222
Q ss_pred -cCC-CcEEEEecCCCHHHHHHHH
Q 006661 104 -EMD-LPVIMMSADGRVSAVMRGI 125 (636)
Q Consensus 104 -~~~-iPVIILSa~~d~e~v~kAl 125 (636)
.++ -.++++++......+.+.+
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 3567788877766655544
No 344
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=25.68 E-value=2.4e+02 Score=30.31 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=58.5
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC--------CCCCCCHHHHHHHHhccCCCcEEEEecCC-CHHHHHHHHHcCCCeEE
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDV--------HMPDMDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI--------~MPdmDG~ELLk~Ir~~~~iPVIILSa~~-d~e~v~kAle~GA~DYL 133 (636)
.++.++|.+.+++.. +|.+-.-+ .-|..| |+++++|++.-++|+++=-+.. ..+.+.+|++.|++-.=
T Consensus 154 ~T~peea~~Fv~~Tg--vD~LAvaiGt~HG~Y~~~p~Ld-fd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 154 LTDPQEAKRFVELTG--VDSLAVAIGTAHGLYSKTPKID-FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred CCCHHHHHHHHHHhC--CCEEEeccCcccCCCCCCCcCC-HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 568899999998764 88777766 235566 8999999877789988854443 46678889999976542
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 006661 134 IKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 134 lKPi~~eeLk~~Iq~vlrkk 153 (636)
+ -.+|+.++.+.+++.
T Consensus 231 i----~T~l~~a~~~~~~~~ 246 (286)
T PRK12738 231 V----ATELKIAFAGAVKAW 246 (286)
T ss_pred e----CcHHHHHHHHHHHHH
Confidence 2 235555555555443
No 345
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=25.48 E-value=2.5e+02 Score=31.79 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=40.1
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 79 ~pDLVIlDI~MPd-mDG~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
.+|+|.+|..-.+ ....+.+++|++. +++|||+ ..-.+.+.+..++++||+...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 3899999984443 3467788888765 6788876 444567888899999997763
No 346
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=25.45 E-value=3.6e+02 Score=29.63 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006661 34 LRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (636)
Q Consensus 34 lRVLIVDDD~~~-----re~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk 99 (636)
-|+|||-|.... .+.+...|++.+.++..+. +..++++.+++.. +|+||. ..+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--AQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 378988887543 3667888887776655543 3446666666654 898875 45656566655
Q ss_pred HH
Q 006661 100 HI 101 (636)
Q Consensus 100 ~I 101 (636)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 54
No 347
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.43 E-value=7.7e+02 Score=25.49 Aligned_cols=81 Identities=10% Similarity=-0.090 Sum_probs=49.8
Q ss_pred EEEEE-eCCH---HHHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006661 35 RVLVV-DDDI---TCLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (636)
Q Consensus 35 RVLIV-DDD~---~~re~L~~lL~~~gy~V~t-------asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~ 103 (636)
||.|+ +|++ ...+.++..+++.|.+|+. ..+....+..++..+ ||+|++-.. ..++..+++.++.
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGG--PDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEecc--cchHHHHHHHHHH
Confidence 55444 4443 3345667777777777642 346777788777655 999987543 3478888888754
Q ss_pred -cCCCcEEEEecCCCHH
Q 006661 104 -EMDLPVIMMSADGRVS 119 (636)
Q Consensus 104 -~~~iPVIILSa~~d~e 119 (636)
....+++..+...+..
T Consensus 215 ~G~~~~~~~~~~~~~~~ 231 (312)
T cd06346 215 QGLFDKFLLTDGMKSDS 231 (312)
T ss_pred cCCCCceEeeccccChH
Confidence 3455666544433433
No 348
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.35 E-value=2.3e+02 Score=30.99 Aligned_cols=53 Identities=21% Similarity=0.109 Sum_probs=38.8
Q ss_pred ceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 80 FDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 80 pDLVIlDI~MPdmD-G~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
+|+|.+|+-.++.+ -.+++++|+.. +++|||.= .-.+.+.+..+.++||+...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 59999999887644 45688888754 45666652 23377888999999998754
No 349
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=25.18 E-value=3.4e+02 Score=28.24 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=60.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEE-----EC--CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhccC-C
Q 006661 37 LVVDDDITCLRILEQMLRRCLYNVTT-----CS--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEM-D 106 (636)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy~V~t-----as--dg~eALe~Lre~k~~pDLVIlDI~MPdm--DG~ELLk~Ir~~~-~ 106 (636)
.+..|.....+.++.+- ..+..|.. .. +..+..+.+.+. ..|.|.+|...++. --++.++++++.. +
T Consensus 115 ~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ 191 (231)
T TIGR00736 115 ELLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFND 191 (231)
T ss_pred hhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCC
Confidence 34555555555555555 33333321 11 222333444443 48988889776653 2478888887665 5
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+|||---.-.+.+.+.+.++.||+...+
T Consensus 192 ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 192 KIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 9999888888889999999999987644
No 350
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=25.15 E-value=8.5e+02 Score=25.94 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=61.7
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006661 34 LRVLVVDD---DI-TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (636)
Q Consensus 34 lRVLIVDD---D~-~~re~L~~lL~~~gy--~V~tas--dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~ 105 (636)
++++|+.+ +- ...+.++++.+..+. .|.... +.++..+.+.. .|+.++-. ..+.-|..+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps-~~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPS-YNESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECC-CCCCcChHHHHHHH--c
Confidence 56666643 11 233445555554432 233322 23444444432 47666542 23334666666663 4
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.+|||...... ..+.+..|..+++..|-+.++|.+.+.+++.
T Consensus 326 G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 67888643322 3345677888999999999999999988764
No 351
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=24.98 E-value=4.9e+02 Score=30.49 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=51.4
Q ss_pred ceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHH-cCCCe------EEeCCCCHHHHHHHHH
Q 006661 80 FDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACD------YLIKPIREEELKNIWQ 147 (636)
Q Consensus 80 pDLVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle-~GA~D------YLlKPi~~eeLk~~Iq 147 (636)
=.|+++|+..-+ +.| +++++.+.....+|||.-..-...+.+.++++ .||+. |-.+-.+..+++..++
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 479999997765 455 45788887778999999999999999999997 45555 3345567777766554
No 352
>PRK13695 putative NTPase; Provisional
Probab=24.98 E-value=4.4e+02 Score=25.13 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=39.9
Q ss_pred CCceEEEEeC--CCCCCC--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc--CCCeEEeCCCCHHHHHHHHHHHH
Q 006661 78 GCFDVVLSDV--HMPDMD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 78 ~~pDLVIlDI--~MPdmD--G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~--GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
..+|++|+|= .+...+ -.+++..+- ....|+|+++...........+.. +..=|-..|-+.++|...+...+
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 3589999995 222222 123333333 356788887776544333333433 22335556778888877665543
No 353
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=24.93 E-value=2.2e+02 Score=26.84 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=39.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
.+.+|.++.+.. ..+.++..... ..++..+.+..++++++...+ .|.++.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g~--~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSGR--IDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcCC--eeeeeccc
Confidence 456888888855 44445555443 577888999999999998765 99999974
No 354
>PF13941 MutL: MutL protein
Probab=24.82 E-value=1.1e+03 Score=27.16 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=72.6
Q ss_pred CccEEEEEeCCHHH-HHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC---HHHHHHHHh-c
Q 006661 32 AGLRVLVVDDDITC-LRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMD---GFKLLEHIG-L 103 (636)
Q Consensus 32 ~glRVLIVDDD~~~-re~L~~lL~~~gy~V~---tasdg~eALe~Lre~k~~pDLVIlDI~MPdmD---G~ELLk~Ir-~ 103 (636)
-|+|++++-=-+.. .+.-++.-...|-.|. ...-.++-++.+++.+ ||+||+-=--.+.| .++..+.|. .
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~--PDiILLaGGtDgG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIR--PDIILLAGGTDGGNKEVILHNAEMLAEA 152 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccC--CCEEEEeCCccCCchHHHHHHHHHHHhC
Confidence 46888777554332 3333333334454443 3444556677777665 99999943222222 244455553 3
Q ss_pred cCCCcEEEEecCCCHHHHHHHHH-cCCCeEEeCCC-------CHHHHHHHHHHHHHHhhc
Q 006661 104 EMDLPVIMMSADGRVSAVMRGIR-HGACDYLIKPI-------REEELKNIWQHVVRKRWN 155 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAle-~GA~DYLlKPi-------~~eeLk~~Iq~vlrkk~~ 155 (636)
...+|||+--...-.+.+.+.|+ .|..-|++.-+ +.+-.+.+|+.++.++..
T Consensus 153 ~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii 212 (457)
T PF13941_consen 153 NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRHII 212 (457)
T ss_pred CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHh
Confidence 45788887776666777888888 66666666532 455567777777665543
No 355
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.82 E-value=3.2e+02 Score=29.16 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=51.7
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeC--CC---CC--CCHHHHHHHHhccCCCcEEEEecCC-CHHHHHHHHHcCCCeEE
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDV--HM---PD--MDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI--~M---Pd--mDG~ELLk~Ir~~~~iPVIILSa~~-d~e~v~kAle~GA~DYL 133 (636)
.+++.++|.+..++.. +|.+-+-+ -- ++ .=|++.+++|++..++|++++-+.. ..+.+.++++.|++..=
T Consensus 151 s~t~~eea~~f~~~tg--~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEETD--VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhhC--CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 4788999988886543 78777633 11 11 2379999999877789999887444 56778899999998764
Q ss_pred e
Q 006661 134 I 134 (636)
Q Consensus 134 l 134 (636)
+
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 356
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.74 E-value=5.7e+02 Score=27.75 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeE-----EEECCHHHHHHHHHHcCCCceEEEEe
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNV-----TTCSQAAVALDILRERKGCFDVVLSD 86 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V-----~tasdg~eALe~Lre~k~~pDLVIlD 86 (636)
.-|...=|||=+|-|+..++.=..+-++.+..+ ..-.-++...+++.+.+ |||+++-
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViT 161 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVIT 161 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEEe
Confidence 335555689999999987776666666655443 33344555666777766 9988873
No 357
>PLN02823 spermine synthase
Probab=24.67 E-value=1.7e+02 Score=32.12 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=38.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-----gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MP 90 (636)
..+|.+||=|+...+..++.+... .-.+. ...|+...+ +.....+|+||+|+--|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 358999999999999999988642 12332 456666655 33345699999997444
No 358
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.62 E-value=8e+02 Score=25.43 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=37.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC----CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD----GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~----~d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
.|++++.- + +..+++.+ ...+|+|++... .......+.+..+-.+++..+- +.++|.+.+..++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam--~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELA--ALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHH--HhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 57777521 1 34445555 356888875422 1122222333334467888774 89999988887764
No 359
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=24.52 E-value=5.2e+02 Score=28.60 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCC----CHHHHHHHHhc-cCCCcEEEEecCCC
Q 006661 43 ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM----DGFKLLEHIGL-EMDLPVIMMSADGR 117 (636)
Q Consensus 43 ~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdm----DG~ELLk~Ir~-~~~iPVIILSa~~d 117 (636)
..-.+.|...|...||..+.. ...+|+|++.....-. ..+++++++++ .++.+||+.-.+.
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a- 75 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYA- 75 (414)
T ss_pred HHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcc-
Confidence 344567888888888875532 1237999998755443 36778888764 3455555543333
Q ss_pred HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 118 VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 118 ~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
.....++.++...|++.-+-....+...++..
T Consensus 76 ~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 76 QSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred ccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 22233445566678999888888887777654
No 360
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=24.47 E-value=2.8e+02 Score=30.22 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
.++.+++++..++||+..-...+.+.+.++++.|..|++
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V 303 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMV 303 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChh
Confidence 556778887778999988777888999999999987764
No 361
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.36 E-value=5.2e+02 Score=31.76 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=71.0
Q ss_pred CCCCCcccccccCCCC-CCCc-cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC
Q 006661 14 SGYGSSRAADVAVPDQ-FPAG-LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (636)
Q Consensus 14 ~~~~s~~~~d~~~~d~-fP~g-lRVLIVDDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~ 88 (636)
.|.|..++.-.....- .-.| -+|.+++-|.. ..+.++.+-+..+..+..+.+..+..+.++... .+|+||+|.
T Consensus 194 nGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDT- 271 (767)
T PRK14723 194 TGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDT- 271 (767)
T ss_pred CCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeC-
Confidence 3666655433322111 1233 48888877753 235555555566666777778888777777654 579999996
Q ss_pred CCC---CC--HHHHHHHHh-c-cCCCcEEEEecCCCHHH---HHHHHHc----CCCeE-EeCCCCHHHHHHHHHHH
Q 006661 89 MPD---MD--GFKLLEHIG-L-EMDLPVIMMSADGRVSA---VMRGIRH----GACDY-LIKPIREEELKNIWQHV 149 (636)
Q Consensus 89 MPd---mD--G~ELLk~Ir-~-~~~iPVIILSa~~d~e~---v~kAle~----GA~DY-LlKPi~~eeLk~~Iq~v 149 (636)
++ .| -.+.++.+. . .+.-.++++++....+. +.+.|.. +..++ ++|=.....+-.++.-+
T Consensus 272 -AGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~ 346 (767)
T PRK14723 272 -VGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTV 346 (767)
T ss_pred -CCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHH
Confidence 33 22 233333332 1 23344666776655443 4455643 45665 45533333333444433
No 362
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=24.36 E-value=2.6e+02 Score=30.63 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=42.1
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 80 FDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 80 pDLVIlDI~MPd-mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.|+|++|+--.. ..-++.++.|++....|.|+.-.-...+.+..++++||+...+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 599999985443 33567788887666667666665678899999999999987643
No 363
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=24.26 E-value=1.7e+02 Score=34.98 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=48.7
Q ss_pred CceEEEEe-CCCCCCCHHHH-HHHHhccC-CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 79 ~pDLVIlD-I~MPdmDG~EL-Lk~Ir~~~-~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.+.|+|+| ++|-..+.+.. ++.|.+-+ .+.+|+.|. +...+...+...+.-|-.||++.+++...++++++.
T Consensus 119 ~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt--~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT--DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC--CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH
Confidence 46788886 56655556664 45554322 344454443 444566677777888999999999999999988754
No 364
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.20 E-value=5.8e+02 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHHhccC--CCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 95 ~ELLk~Ir~~~--~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
++.+++++... ++|||....-.+.+.+.+++..||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 55677776544 799999999999999999999998754
No 365
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=24.20 E-value=4.9e+02 Score=27.09 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=37.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g-----y~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPd 91 (636)
.-+|.+||-++...+..++.+.... -.+. ...++.+.++. ....+|+||+|.--|.
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~---~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD---TENTFDVIIVDSTDPV 157 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---CCCCccEEEEeCCCCC
Confidence 3579999999999888888875431 1222 34566555543 2345999999975443
No 366
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=24.17 E-value=7.3e+02 Score=25.98 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=37.0
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
-|+.+++.+ ...+|||....... ..+.+..|..+|+..|-+.++|..++..++.
T Consensus 291 ~~~~~lEAm--a~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~ 344 (372)
T cd04949 291 FGLSLMEAL--SHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLN 344 (372)
T ss_pred cChHHHHHH--hCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHc
Confidence 345555555 25678886432211 2344677889999999999999999988875
No 367
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=24.11 E-value=3.2e+02 Score=31.25 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
.++.+.+.+.. .|+|++|..-.. ..-++.++.|+.. +++|||+ -.-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 45555555544 899999974333 3456778888755 4788877 555677888999999997764
No 368
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=23.91 E-value=3e+02 Score=31.86 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+-.+.|.+. ..|+|.+|.--.. ..-++++++|+.. ++++||+ ..-...+.+..++++||+...+
T Consensus 248 ~~~~r~~~l~~a--g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVKA--GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHHc--CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 334444444443 3899999984211 1224788888764 4566554 3345677889999999997754
No 369
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.88 E-value=2.9e+02 Score=28.91 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHH-
Q 006661 47 RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI- 125 (636)
Q Consensus 47 e~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAl- 125 (636)
..|.++.++.|.......-..++++.+.+. ++-..=|--.+.+-+.+++++.+ .+.|||+=|+-...+.+.+|+
T Consensus 59 ~~L~~~~~~~gi~f~stpfd~~s~d~l~~~----~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPFDEESVDFLEEL----GVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAVE 133 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE-SHHHHHHHHHH----T-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEECCCCHHHHHHHHHc----CCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHH
Confidence 455666667787776655667788888653 44455566677888999999965 678999988888877766665
Q ss_pred ---HcCCCeEEe------CCCCHHHHH
Q 006661 126 ---RHGACDYLI------KPIREEELK 143 (636)
Q Consensus 126 ---e~GA~DYLl------KPi~~eeLk 143 (636)
+.|..++++ -|..++++.
T Consensus 134 ~~~~~~~~~l~llHC~s~YP~~~e~~N 160 (241)
T PF03102_consen 134 VLREAGNEDLVLLHCVSSYPTPPEDVN 160 (241)
T ss_dssp HHHHHCT--EEEEEE-SSSS--GGG--
T ss_pred HHHhcCCCCEEEEecCCCCCCChHHcC
Confidence 446666533 266666654
No 370
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=23.88 E-value=4e+02 Score=31.52 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=45.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
++++.++|.|+...+.+++ .++.+..-+ +-.+.|+... -+..|++++-+.-++ .-..++..+|+ .++++||
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~ag--i~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAG--AAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQII 495 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcC--CCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEE
Confidence 4567777777665444432 355554222 1112232222 123666666543222 22344444543 4667766
Q ss_pred EEecCCCHHHHHHHHHcCCCeE
Q 006661 111 MMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DY 132 (636)
+-+. +.+...+..+.||+..
T Consensus 496 aRa~--d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 496 ARAR--DVDHYIRLRQAGVEKP 515 (621)
T ss_pred EEEC--CHHHHHHHHHCCCCEE
Confidence 5443 4455666677888754
No 371
>PRK00811 spermidine synthase; Provisional
Probab=23.66 E-value=5.2e+02 Score=27.29 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=40.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC------CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRC------LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~------gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPd 91 (636)
+..-+|.+||=|+...+..++.+... .-+| ....|+.+.++ .....+|+||+|.--|.
T Consensus 98 ~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 98 PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---ETENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---hCCCcccEEEECCCCCC
Confidence 34458999999999999999988642 1233 24566665543 33345999999975553
No 372
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.63 E-value=3.9e+02 Score=26.08 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh---ccCCCcEEEEecCCC
Q 006661 48 ILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGR 117 (636)
Q Consensus 48 ~L~~lL~~~gy~V~t--asdg~eALe~Lre~k~~pDLVIlDI~MPd-----mDG~ELLk~Ir---~~~~iPVIILSa~~d 117 (636)
.....|++.|+.+.. +..+...+..+.... ||.|-+|..+-. .....+++.+. ...++.|| .+.-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 344556677887654 555666677777655 999999975431 11334555542 33455544 566677
Q ss_pred HHHHHHHHHcCCCe----EEeCCCCHH
Q 006661 118 VSAVMRGIRHGACD----YLIKPIREE 140 (636)
Q Consensus 118 ~e~v~kAle~GA~D----YLlKPi~~e 140 (636)
.+....+.+.|++. |+-||...+
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 77888888999863 577886543
No 373
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.52 E-value=3e+02 Score=24.60 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccCCCcEEEEecCCCHHH
Q 006661 43 ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMDLPVIMMSADGRVSA 120 (636)
Q Consensus 43 ~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir~~~~iPVIILSa~~d~e~ 120 (636)
....+.++..|.+.+..+....+.......+... .+-|++|+ +..++ .+-.++++..++ .+++||.+|...+...
T Consensus 12 ~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~-~g~~vi~iT~~~~s~l 88 (128)
T cd05014 12 GHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKR-RGAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH-CCCeEEEEeCCCCCch
Confidence 3445667777777787777665543322222211 12466555 33333 334566666543 5799999999877654
Q ss_pred HHHHHHcCCCeEEeCCC
Q 006661 121 VMRGIRHGACDYLIKPI 137 (636)
Q Consensus 121 v~kAle~GA~DYLlKPi 137 (636)
.. .++..|.-|.
T Consensus 89 a~-----~ad~~l~~~~ 100 (128)
T cd05014 89 AK-----LSDVVLDLPV 100 (128)
T ss_pred hh-----hCCEEEECCC
Confidence 32 3555555553
No 374
>PRK10867 signal recognition particle protein; Provisional
Probab=23.46 E-value=7.7e+02 Score=28.08 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=31.0
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEE---CCHHH----HHHHHHHcCCCceEEEEeC
Q 006661 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTC---SQAAV----ALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 33 glRVLIVDDD~~~---re~L~~lL~~~gy~V~ta---sdg~e----ALe~Lre~k~~pDLVIlDI 87 (636)
|.+|++|+-|..- .+.++.+.+..+..+... .++.+ +++..+. ..+|+||+|.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDT 191 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDT 191 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeC
Confidence 6789999988533 233444455556555543 24433 3333333 2489999997
No 375
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=23.45 E-value=7.3e+02 Score=24.65 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|..+++.+. ..+|||.- .... ..+.+..+..+++.++-+.+++.+.+..++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 334444442 45777753 2222 34556778888999999999999999887653
No 376
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.39 E-value=1.2e+03 Score=27.03 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=70.1
Q ss_pred CccEEEEEeCC--HHHHHHHHHHHHhCCCeE---EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC---HHHHHHHHh-
Q 006661 32 AGLRVLVVDDD--ITCLRILEQMLRRCLYNV---TTCSQAAVALDILRERKGCFDVVLSDVHMPDMD---GFKLLEHIG- 102 (636)
Q Consensus 32 ~glRVLIVDDD--~~~re~L~~lL~~~gy~V---~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmD---G~ELLk~Ir- 102 (636)
-|+|++++-=- -+.+..-+..| ..|-.| +.....+.-++.+++.+ ||+||+-=--.+.+ ++...+.|.
T Consensus 71 GGLkmvv~Glv~~~TaeAAk~AAl-gAGA~V~~~~a~~l~~~~l~~I~~~~--PDIILLaGGtDGG~~e~~l~NA~~La~ 147 (463)
T TIGR01319 71 GGLAMAAIGLVPEITAEAAKRAAH-GAGAKIANVYAYDLNNKDIEAIEESN--LDIILFAGGTDGGEEECGIHNAKMLAE 147 (463)
T ss_pred CChheEEEeccchhhHHHHHHHHh-cCCcEEEEEEeecCCHHHHHHHhhcC--CCEEEEeCCcCCCchHHHHHHHHHHHh
Confidence 46777777443 34444444444 335444 45556666777777765 99999853222222 244555663
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHHc-CCCeEEeCC-------CCHHHHHHHHHHHHHHhh
Q 006661 103 LEMDLPVIMMSADGRVSAVMRGIRH-GACDYLIKP-------IREEELKNIWQHVVRKRW 154 (636)
Q Consensus 103 ~~~~iPVIILSa~~d~e~v~kAle~-GA~DYLlKP-------i~~eeLk~~Iq~vlrkk~ 154 (636)
..-++|||+--..+-.+.+.+.+.. +..-|++.- ++.+-.+++|+.++.++.
T Consensus 148 ~~~~~pIIyAGN~~a~~~V~~il~~~~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~I 207 (463)
T TIGR01319 148 HGLDCAIIVAGNKDIQDEVQEIFDHADIFYRITDNVLPDLDHLNPEAAREAICDIFLKKI 207 (463)
T ss_pred cCCCCcEEEeCCHHHHHHHHHHHhcCCceEEecCCcCCCCCCcCchHHHHHHHHHHHHHH
Confidence 3457898877776677777788864 333345543 244556777777765443
No 377
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=23.39 E-value=2.8e+02 Score=28.46 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccCCCcEEE---E--ecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMDLPVIM---M--SADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 64 sdg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir~~~~iPVII---L--Sa~~d~e~v~kAle~GA~DYLlKP 136 (636)
.+..++++.+++.. .+++.+|+..+- .-|.++++.|++. +.++++ + .......++..+.+.||+-+..-+
T Consensus 12 ~~~~~~l~~~~~~~--~~~~~ikvg~~~f~~~G~~~i~~l~~~-~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~ 88 (230)
T PRK00230 12 PSKEEALAFLDQLD--PAVLFVKVGMELFTAGGPQFVRELKQR-GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHA 88 (230)
T ss_pred CCHHHHHHHHHhcC--CcccEEEEcHHHHHhcCHHHHHHHHhc-CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcc
Confidence 35566777666544 556667776653 3466777777643 233332 1 122233445567788888777777
Q ss_pred CCHHHHHH
Q 006661 137 IREEELKN 144 (636)
Q Consensus 137 i~~eeLk~ 144 (636)
..-.+..+
T Consensus 89 ~ag~~~i~ 96 (230)
T PRK00230 89 SGGPRMMK 96 (230)
T ss_pred cCCHHHHH
Confidence 65444333
No 378
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=23.32 E-value=7e+02 Score=27.17 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=39.4
Q ss_pred HHHHHHhccC--CCcEEEEecCCCHHHHHHHHHcCCCe------EEeC-CCCHHHHHHHHHHHHH
Q 006661 96 KLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACD------YLIK-PIREEELKNIWQHVVR 151 (636)
Q Consensus 96 ELLk~Ir~~~--~iPVIILSa~~d~e~v~kAle~GA~D------YLlK-Pi~~eeLk~~Iq~vlr 151 (636)
+.++++++.. ++|||....-.+.+.+.+.+.+||+. ++.+ |.-..++.+-+.+.+.
T Consensus 277 ~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 277 EVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4555665443 79999999999999999999999975 3444 6555555555555443
No 379
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.32 E-value=5.8e+02 Score=27.00 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=32.5
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
..+++++.+++..++||+..-...+.+.+.++++.|..|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 35677888877678999988887889999999999666653
No 380
>PRK14967 putative methyltransferase; Provisional
Probab=23.31 E-value=7.4e+02 Score=24.76 Aligned_cols=48 Identities=25% Similarity=0.106 Sum_probs=32.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
+|..+|-++...+..+..+...+..+. ...+..+. +.. ..+|+|+++.
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---~~~--~~fD~Vi~np 109 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---VEF--RPFDVVVSNP 109 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---ccC--CCeeEEEECC
Confidence 899999999888888877776555443 33344332 222 3599999983
No 381
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=23.26 E-value=5e+02 Score=27.58 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.9
Q ss_pred HHHHHHHhccC--CCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 95 ~ELLk~Ir~~~--~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
++.+.++++.. ++|||....-.+.+.+.+.+.+||+...
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67777776544 8999999999999999999999998643
No 382
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.23 E-value=3e+02 Score=29.60 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=58.4
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCcEEEEecCC-CHHHHHHHHHcCCCeEEe
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~M-------PdmDG~ELLk~Ir~~~~iPVIILSa~~-d~e~v~kAle~GA~DYLl 134 (636)
.++.++|.+.+++.. +|.+=+.+-- |+.| ++++++|++..++|+++=-+.. ..+.+.+|++.|+.-.=.
T Consensus 152 ~T~pe~a~~Fv~~Tg--vD~LAvaiGt~HG~Y~~p~l~-~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 152 KTEPEKVKDFVERTG--CDMLAVSIGNVHGLEDIPRID-IPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred cCCHHHHHHHHHHhC--cCeeehhccccccCCCCCCcC-HHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence 578899999998765 8877666621 4443 6899999877789988865444 456778899999876533
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 006661 135 KPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 135 KPi~~eeLk~~Iq~vlrkk 153 (636)
- .+|+.++.+.+++.
T Consensus 229 ~----Tel~~a~~~~~~~~ 243 (283)
T PRK07998 229 A----SDLRKAFITTVGKA 243 (283)
T ss_pred C----HHHHHHHHHHHHHH
Confidence 2 45555555555543
No 383
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=23.13 E-value=7.6e+02 Score=28.08 Aligned_cols=102 Identities=25% Similarity=0.282 Sum_probs=50.5
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEeCC--CC-CCCHHHHH
Q 006661 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDVH--MP-DMDGFKLL 98 (636)
Q Consensus 32 ~glRVLIVDDD~---~~re~L~~lL~~~gy~V~tas---dg~----eALe~Lre~k~~pDLVIlDI~--MP-dmDG~ELL 98 (636)
.+.+|++||-|. ...+.++.+-...+..+..+. ++. ++++.+... .+|+||+|.- ++ +.+.++-+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHHH
Confidence 467999999884 233444555455455554432 332 344444333 4899999973 22 12234444
Q ss_pred HHHhc--cCCCcEEEEecCCCHHHH--HHHHH--cCCCeE-EeC
Q 006661 99 EHIGL--EMDLPVIMMSADGRVSAV--MRGIR--HGACDY-LIK 135 (636)
Q Consensus 99 k~Ir~--~~~iPVIILSa~~d~e~v--~kAle--~GA~DY-LlK 135 (636)
..+.. .++-.++++.+....+.+ .+.+. .+..+. ++|
T Consensus 205 ~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTK 248 (428)
T TIGR00959 205 AAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTK 248 (428)
T ss_pred HHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeC
Confidence 44422 233335555554433222 23332 455555 444
No 384
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.11 E-value=3.5e+02 Score=30.05 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=41.4
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 34 lRVLIVDDD~~~----re~L~~lL~~~gy~V~ta---------sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
-++||+-|.... .+.+...|++.+..+..+ ....++++.+++.+ +|+||- ..+..-+++.|.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~--~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESG--CDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCChHHHHHHHH
Confidence 477888765332 355777787777665544 23557777777765 999886 567666777766
Q ss_pred H
Q 006661 101 I 101 (636)
Q Consensus 101 I 101 (636)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 5
No 385
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=23.04 E-value=4.1e+02 Score=29.42 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=41.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 34 lRVLIVDDD~~----~re~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
-|||||-|... ..+.+...|+..++.+..+. ...++++.+++.+ +|+||- +.+..-+++.+.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~AK~ 96 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFK--PDTIIA---LGGGSPMDAAKI 96 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHHH
Confidence 58899887543 34457777877777665443 4557777777655 898885 456566666655
Q ss_pred H
Q 006661 101 I 101 (636)
Q Consensus 101 I 101 (636)
+
T Consensus 97 i 97 (398)
T cd08178 97 M 97 (398)
T ss_pred H
Confidence 4
No 386
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=23.01 E-value=4.8e+02 Score=27.95 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEEE-----ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLY-NVTT-----CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy-~V~t-----asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
-|++||-|... .+.+.+.|+..+. .+.. ..+.+++.+.++... ++|+||- ..+..-+++.+.+.....+
T Consensus 26 ~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~~ 100 (331)
T cd08174 26 GRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRGI 100 (331)
T ss_pred CceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcCC
Confidence 47888877655 5556666665443 3332 235556666666543 4798875 5677778888888666778
Q ss_pred cEEEEec
Q 006661 108 PVIMMSA 114 (636)
Q Consensus 108 PVIILSa 114 (636)
|+|.+-.
T Consensus 101 p~i~vPT 107 (331)
T cd08174 101 PLSVPTT 107 (331)
T ss_pred CEEEecC
Confidence 8887643
No 387
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.99 E-value=6.6e+02 Score=28.95 Aligned_cols=101 Identities=21% Similarity=0.157 Sum_probs=63.7
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC----------C-CCC
Q 006661 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----------P-DMD 93 (636)
Q Consensus 32 ~glRVLIVDDD----~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~M----------P-dmD 93 (636)
.+.+++++|-- ....+.++.+=+++ +..|. -+.+.++|..+++. ..|.|-+-+-- . +.-
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a---Gad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA---GADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc---CCCEEEECccCCcccccccccCCchh
Confidence 57888888844 33333333333332 23332 46788888888764 37888644322 0 112
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 94 G~ELLk~Ir---~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
-+.++..+. ...++|||.--.-.....+.+|+.+||+...+-
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 344555443 245799999888889999999999999876653
No 388
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=22.89 E-value=6.4e+02 Score=27.27 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--------------------CCHHHHHHHHHHcCCCceEEEEeCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC--------------------SQAAVALDILRERKGCFDVVLSDVH 88 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~ta--------------------sdg~eALe~Lre~k~~pDLVIlDI~ 88 (636)
|..++|||++.-...+..+.. +.+.||.|..+ .|.+..++.+++.. +|+|+....
T Consensus 10 ~~~~~ilIiG~g~~~~~~~~a-~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~--id~vi~~~e 84 (395)
T PRK09288 10 PSATRVMLLGSGELGKEVAIE-AQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREK--PDYIVPEIE 84 (395)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhC--CCEEEEeeC
Confidence 455688888887666655554 44556655322 23334444555433 888887654
No 389
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.86 E-value=8.6e+02 Score=25.18 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=50.7
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCc-EEE-EecCCCHHHHHHHHHcCCCeEE
Q 006661 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP-VIM-MSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 58 y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~--~~iP-VII-LSa~~d~e~v~kAle~GA~DYL 133 (636)
.-|....+.++|++.++.... --+=++++-|-.-+.++.++.|+.. ...| +++ .-.--+.+.+.+++++||. |+
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~-gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~-Fi 95 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYD-GGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN-FI 95 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHH-CCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC-EE
Confidence 356677788888877664211 1233555556556688888877422 1122 333 3344578889999999986 55
Q ss_pred eCCCCHHHHHH
Q 006661 134 IKPIREEELKN 144 (636)
Q Consensus 134 lKPi~~eeLk~ 144 (636)
+-|.-..++.+
T Consensus 96 VsP~~~~~v~~ 106 (222)
T PRK07114 96 VTPLFNPDIAK 106 (222)
T ss_pred ECCCCCHHHHH
Confidence 55654444443
No 390
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=22.73 E-value=3.5e+02 Score=29.99 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=43.3
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCcEEEEe-cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~E-LLk~Ir~~~~iPVIILS-a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
.+.+|++..-...==+| ++..+ .....++... ...+...+.+.++.|+++.+++|-++.+++++...+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 46666665432222222 33444 2344454433 3345566778889999999999999999998776653
No 391
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.70 E-value=6.3e+02 Score=27.33 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=59.8
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEeCCCCCCC
Q 006661 35 RVLVV--DDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDMD 93 (636)
Q Consensus 35 RVLIV--DDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~----------------Lre~k~~pDLVIlDI~MPdmD 93 (636)
+|.|+ .+.+. ....+.++|.+.++++....+..+.+.. .......+|+||+ -+.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 46666 33333 3455666666778887765443222210 0111113677776 2677
Q ss_pred HHHHHHHHhc--cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 94 GFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 94 G~ELLk~Ir~--~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
| .+++..+. ..++||+=+. .|-.+||.- ++.+++...+++++++.+.
T Consensus 79 G-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~y~ 127 (305)
T PRK02649 79 G-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQYT 127 (305)
T ss_pred H-HHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCCcE
Confidence 7 34444442 3578887653 366788884 6789999999998876543
No 392
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=22.56 E-value=2.2e+02 Score=29.04 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=48.7
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 57 gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~M---PdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
++.|....+.+++.+++... .|+|-+|.-. | .+--+++++|+... +++|..-.+.+....|.++|++ ++
T Consensus 45 ~~~V~ITPT~~ev~~l~~aG---adIIAlDaT~R~Rp-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D-~I 116 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAG---ADIIALDATDRPRP-ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD-II 116 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT----SEEEEE-SSSS-S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S-EE
T ss_pred CCCeEECCCHHHHHHHHHcC---CCEEEEecCCCCCC-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC-EE
Confidence 46788888888888887643 7999999843 5 67778888997655 6778888899999999999964 44
Q ss_pred e
Q 006661 134 I 134 (636)
Q Consensus 134 l 134 (636)
-
T Consensus 117 ~ 117 (192)
T PF04131_consen 117 G 117 (192)
T ss_dssp E
T ss_pred E
Confidence 3
No 393
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=22.49 E-value=1.2e+02 Score=35.17 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=35.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLS 85 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg---~eALe~Lre~k~~pDLVIl 85 (636)
+||||||....+-..|.++|++.++++..+.+. ...++.+.... ||.||+
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~--~~~IIl 54 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMS--NPVLML 54 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcC--cCEEEE
Confidence 589999999999999999999998877765542 12234343332 666666
No 394
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=22.44 E-value=7.4e+02 Score=25.45 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCC---CHHH----HHHHHhcc
Q 006661 35 RVLVVDDDITCLRILEQMLR---RCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFK----LLEHIGLE 104 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~---~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdm---DG~E----LLk~Ir~~ 104 (636)
.|.+-.-+|+.+..+..+++ +.++.+..-+||.-..+.++. .|.|.+|+..|+. ..++ .++.++..
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~~----~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFRD----LDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHhh----CCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 57888899988766666554 458888888888755444432 6788999998852 2232 33344322
Q ss_pred CC--CcEEEEecCCCHHHHHHHHHcC-CCeEEeCCCCH
Q 006661 105 MD--LPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIRE 139 (636)
Q Consensus 105 ~~--iPVIILSa~~d~e~v~kAle~G-A~DYLlKPi~~ 139 (636)
.. +.++ ++...+.+.+.+..... ...+++-|...
T Consensus 151 ~~~~vK~V-v~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVV-VFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEE-ECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 22 3333 44455554444433211 12466667654
No 395
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=22.43 E-value=7.9e+02 Score=25.06 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=41.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHH
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHI 101 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdm-DG~ELLk~I 101 (636)
+.+|..+|=++...+..++.+...+. .+. ...+..+..... ...+|+|++..-+..+ |-.++++.+
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~~~~~~~~~l~~~ 135 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFHAVLEWVADPKSVLQTL 135 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEehhHHHhhCCHHHHHHHH
Confidence 57899999999999999888877653 233 344555432222 2349999986543322 334555555
No 396
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=22.32 E-value=7.4e+02 Score=24.54 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|..+++.+. ..+|||. |.... ..+.+..|..+++..+-+.+++.+.+..++.
T Consensus 277 ~~~~~Ea~~--~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA--MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH--cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 455555553 4578876 32222 2344566778899999999999998888654
No 397
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.28 E-value=3.6e+02 Score=28.55 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=39.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--c--CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGL--E--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~--~--~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
+|+||+ -+.||- +++.++. . .++||+=+- .|-.+||. .++++++...+.+++++.+.
T Consensus 36 ~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~y~ 96 (265)
T PRK04885 36 PDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDPGQ 96 (265)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCCce
Confidence 798887 367774 3444432 2 477877543 57788999 68889999999998876543
No 398
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.20 E-value=2.4e+02 Score=34.09 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=47.8
Q ss_pred CceEEEEe-CCCCCCCHHHHHHH-HhccC-CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 79 CFDVVLSD-VHMPDMDGFKLLEH-IGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 79 ~pDLVIlD-I~MPdmDG~ELLk~-Ir~~~-~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
.+.++|+| ++|-...++..+.+ |...+ .+.+|+.|. +...+...+...+.-|-.||++.+++...+++++.+.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt--d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT--DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC--ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc
Confidence 36788887 66665556664444 44322 355555553 3333444555666778899999999999999888653
No 399
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=22.18 E-value=6.8e+02 Score=27.00 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=59.0
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEE------EC---CHHHHHHHHHHcCCCceEEEEeCCC-CC-C---CHHHHHHHHh
Q 006661 37 LVVDDDITCLRILEQMLRRCLYNVTT------CS---QAAVALDILRERKGCFDVVLSDVHM-PD-M---DGFKLLEHIG 102 (636)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy~V~t------as---dg~eALe~Lre~k~~pDLVIlDI~M-Pd-m---DG~ELLk~Ir 102 (636)
.++.|-....+.++.+-....+.|.. .. +..+..+.+.+. ..|.|.+.-.. +. . -.++++++++
T Consensus 113 ~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik 190 (321)
T PRK10415 113 ALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVK 190 (321)
T ss_pred HHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHH
Confidence 35556666667777666555444431 11 233333444433 36766554322 21 1 2378888888
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHH-cCCCeEEe
Q 006661 103 LEMDLPVIMMSADGRVSAVMRGIR-HGACDYLI 134 (636)
Q Consensus 103 ~~~~iPVIILSa~~d~e~v~kAle-~GA~DYLl 134 (636)
+..++|||..-.-.+.+.+.++++ .||+...+
T Consensus 191 ~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 191 QKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred HhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 777899999888888999999997 58877544
No 400
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=22.17 E-value=1.9e+02 Score=35.01 Aligned_cols=77 Identities=29% Similarity=0.319 Sum_probs=46.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCC-CCCHHHHHHHHhccCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMP-DMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlD-I-~MP-dmDG~ELLk~Ir~~~~iP 108 (636)
.+.+|+|||-...+...+.++|++.|+++.++.... ..+.+... .+|.||+- = .-| +.+-.++++++- ..++|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~--~~DgLILsgGPGsp~d~~~~~~I~~~~-~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDER--RPDLVVLSPGPGRPADFDVAGTIDAAL-ARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhhc--CCCEEEEcCCCCCchhcccHHHHHHHH-HCCCC
Confidence 568999999998888999999999999887664332 11222222 38887771 1 111 112233444332 34677
Q ss_pred EEEE
Q 006661 109 VIMM 112 (636)
Q Consensus 109 VIIL 112 (636)
|+=+
T Consensus 591 vLGI 594 (717)
T TIGR01815 591 VFGV 594 (717)
T ss_pred EEEE
Confidence 7654
No 401
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.92 E-value=9.1e+02 Score=25.07 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHcC-CCceEEEEeCCCCCCCH-----------HHHHHHHhccCCCcEEE-EecCCC----HHHHHHHHH
Q 006661 64 SQAAVALDILRERK-GCFDVVLSDVHMPDMDG-----------FKLLEHIGLEMDLPVIM-MSADGR----VSAVMRGIR 126 (636)
Q Consensus 64 sdg~eALe~Lre~k-~~pDLVIlDI~MPdmDG-----------~ELLk~Ir~~~~iPVII-LSa~~d----~e~v~kAle 126 (636)
.+.++..+.++... ..+|.|=+++.-|...+ .++++.+++.-++||++ ++...+ .+.+..+.+
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34555444443221 13788888887775321 24566666555778877 554443 233444556
Q ss_pred cCCCeE
Q 006661 127 HGACDY 132 (636)
Q Consensus 127 ~GA~DY 132 (636)
+||+..
T Consensus 188 ~Gad~i 193 (289)
T cd02810 188 AGADGL 193 (289)
T ss_pred cCCCEE
Confidence 675433
No 402
>PRK08084 DNA replication initiation factor; Provisional
Probab=21.85 E-value=6.4e+02 Score=25.68 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=36.4
Q ss_pred ceEEEEe-CCCCCCCH------HHHHHHHhccCCCcEEEEecCCCHHH---HHHHHHcC---CCeEEeCCCCHHHHHHHH
Q 006661 80 FDVVLSD-VHMPDMDG------FKLLEHIGLEMDLPVIMMSADGRVSA---VMRGIRHG---ACDYLIKPIREEELKNIW 146 (636)
Q Consensus 80 pDLVIlD-I~MPdmDG------~ELLk~Ir~~~~iPVIILSa~~d~e~---v~kAle~G---A~DYLlKPi~~eeLk~~I 146 (636)
.|++++| ++.-..+. ++++..+.+.....+|+ |+...... ....+... ..-|-++|.+.+++..++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 6888775 44332221 44444443322334554 55444322 12223222 245777888888888888
Q ss_pred HHHH
Q 006661 147 QHVV 150 (636)
Q Consensus 147 q~vl 150 (636)
++..
T Consensus 177 ~~~a 180 (235)
T PRK08084 177 QLRA 180 (235)
T ss_pred HHHH
Confidence 7644
No 403
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=21.80 E-value=7e+02 Score=25.43 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=54.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.++++|+.+.+.. +.+++.+...+ ..|.......+..+.+.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4566666554432 33444444432 223333333333333332 4666653322 223566666663 456777
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
. +.... ..+.+.. .+++..+-+.+++.+.+..++
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHH
Confidence 5 32222 2222222 567888999999999998876
No 404
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.79 E-value=5e+02 Score=29.54 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=59.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC----HHHHH---HHHhc-cCCCcEEE
Q 006661 40 DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD----GFKLL---EHIGL-EMDLPVIM 111 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmD----G~ELL---k~Ir~-~~~iPVII 111 (636)
-=+..-.+.|...|...||.++. .....|+||+...-.-.+ -...+ +.+++ .++.+||+
T Consensus 34 ~~N~~dse~~~~~l~~~G~~~~~-------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv 100 (467)
T PRK14329 34 QMNFADSEIVASILQMAGYNTTE-------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIVGV 100 (467)
T ss_pred CCcHHHHHHHHHHHHHCcCEECC-------------CcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 45666678888999888998754 112379999987554322 23333 33333 34554554
Q ss_pred EecCCCHHHHHHHHHc-CCCeEEeCCCCHHHHHHHHHHHH
Q 006661 112 MSADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 112 LSa~~d~e~v~kAle~-GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
.-.+.. ..-.+.++. +..||++.+-..+.+..++..+.
T Consensus 101 gGc~a~-~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 101 LGCMAE-RLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred ECChhc-CcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 333332 222344444 44899999999988888887754
No 405
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.77 E-value=2.1e+02 Score=33.09 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=52.4
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 79 ~pDLVIlD-I~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.+-++|+| ++|-..+.++.+-+.-+++...++++-+..+...+...+......|-.+|++.+++...+++++.+
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 36677776 566665666654332244555666655555666777888888889999999999999988887764
No 406
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.77 E-value=9.5e+02 Score=26.65 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=63.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--C-HHHHHHHHHHcCCCceEEEE---------------------eCCCC
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCS--Q-AAVALDILRERKGCFDVVLS---------------------DVHMP 90 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tas--d-g~eALe~Lre~k~~pDLVIl---------------------DI~MP 90 (636)
-|+++-|+.........+-....-.|.+.. . -+..+..+.+.. ||+||+ =.+..
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA~Vlttpwg~ynes~~~eI~~ln--pd~VLIIGGp~AVs~~yE~~Lks~GitV~Rig 107 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNAPVLTTPWGIYNESVLDEIIELN--PDLVLIIGGPIAVSPNYENALKSLGITVKRIG 107 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCCeeEecCcccccHHHHHHHHhhC--CceEEEECCCCcCChhHHHHHHhCCcEEEEec
Confidence 366666666554444444333344444221 1 123333344433 888774 11334
Q ss_pred CCCHHHHHHHH----hc-----cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006661 91 DMDGFKLLEHI----GL-----EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (636)
Q Consensus 91 dmDG~ELLk~I----r~-----~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~e 140 (636)
+.|-.|.++.+ ++ ..++.++++.+.+..+..+++++.|.+-.++|--+..
T Consensus 108 G~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~~~~p~~~~n~~~~ 166 (337)
T COG2247 108 GANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKEGIVPVILKNTSIL 166 (337)
T ss_pred CcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHHHHHHHHhcCcceeEecccccc
Confidence 66778887765 31 2356899999999988889999999999999865444
No 407
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.74 E-value=4.2e+02 Score=29.17 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=40.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006661 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (636)
Q Consensus 34 lRVLIVDDD~~----~re~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~ 100 (636)
-|+|||-|... ..+.++..|++.+.++..+. +..++++.+++.. +|+||- ..+..-+++.|.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASG--ADYLIA---IGGGSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCChHHHHHHHH
Confidence 38898877644 34457778877776655442 3356667777654 898875 456666666664
Q ss_pred H
Q 006661 101 I 101 (636)
Q Consensus 101 I 101 (636)
+
T Consensus 106 i 106 (382)
T PRK10624 106 I 106 (382)
T ss_pred H
Confidence 4
No 408
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.72 E-value=5.3e+02 Score=23.15 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~-V~tasdg~eALe~Lre~--k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
|||.++-|..+ ...+ +-.|.. +..+.+.+++.+.+++. ...+.+|++.=++-..= -+.++++......|+|
T Consensus 1 mkIaVIGD~dt-v~GF----rLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i-~e~i~~~~~~~~~P~i 74 (100)
T PRK02228 1 MEIAVIGSPEF-TTGF----RLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKL-PRRLRRTLEESVEPTV 74 (100)
T ss_pred CEEEEEeCHHH-HHHH----HHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhh-HHHHHHHHhcCCCCEE
Confidence 68888888333 2222 234665 44467766666655532 33477888875432211 1333443344567876
Q ss_pred EEec
Q 006661 111 MMSA 114 (636)
Q Consensus 111 ILSa 114 (636)
+.-.
T Consensus 75 i~IP 78 (100)
T PRK02228 75 VTLG 78 (100)
T ss_pred EEEC
Confidence 6544
No 409
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=21.68 E-value=8.6e+02 Score=24.71 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=36.1
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|..+++.+. ..+|+|.. .... ..+.++.+..+++.++-+.+++.+.+..++.
T Consensus 275 ~~~~~Ea~a--~G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 275 PVVLMEAMA--MGLPVIST-DVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred cHHHHHHHH--cCCCEEec-CCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 555666553 46788752 2222 3455677888999999999999999988764
No 410
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.67 E-value=1.6e+02 Score=29.24 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=34.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
|+|+|||--.-+...+.+.|++.++++..+.+.++. . .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~----~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVI----L----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHh----C----CCCEEEE
Confidence 689999977777788888999999999888876432 1 2687775
No 411
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=21.53 E-value=4.3e+02 Score=27.57 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=41.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH-HHHHHHhccCCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-KLLEHIGLEMDL 107 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy----~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~-ELLk~Ir~~~~i 107 (636)
|=|++.|-++..-+...+..|...+. ++...+..++++..+. ..|.+++|... .|-. ++++.++..+.-
T Consensus 69 gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~~~~~G 142 (218)
T PF07279_consen 69 GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAKLSPRG 142 (218)
T ss_pred CCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhccCCCc
Confidence 33455555554445555555655443 3334444666665543 38999999984 3455 677776654444
Q ss_pred cEEE
Q 006661 108 PVIM 111 (636)
Q Consensus 108 PVII 111 (636)
-|++
T Consensus 143 aVVV 146 (218)
T PF07279_consen 143 AVVV 146 (218)
T ss_pred eEEE
Confidence 4554
No 412
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=21.48 E-value=5.3e+02 Score=26.47 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc---CCCeEEeC--
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLIK-- 135 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~MPdmD---G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~---GA~DYLlK-- 135 (636)
+..+.++.+.+.. .+ ++++|+..-++. -+++++++.+..++|||.-..-.+.+.+.++.+. |+++.++-
T Consensus 147 ~~~~~~~~l~~~G--~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 147 DLWEVLERLDSAG--CSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred cHHHHHHHHHhcC--CCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Q ss_pred ----CCCHHHHHHHHHH
Q 006661 136 ----PIREEELKNIWQH 148 (636)
Q Consensus 136 ----Pi~~eeLk~~Iq~ 148 (636)
+++.++++...++
T Consensus 225 ~~~g~~~~~~~~~~~~~ 241 (241)
T PRK14024 225 LYAGAFTLPEALAVVRR 241 (241)
T ss_pred HHcCCCCHHHHHHHhcC
No 413
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=21.48 E-value=2.4e+02 Score=30.30 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE-eCCCC
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-IKPIR 138 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL-lKPi~ 138 (636)
+.++|++.++... .+++..++--++. +-++.++.|++...+||++--.-.+...+.++++.|+.|++ +||..
T Consensus 201 ~~~~a~~~~~~l~-~~~i~~iEqP~~~-~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 201 DLAEAIRLARALE-EYDLFWFEEPVPP-DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred CHHHHHHHHHHhC-ccCCCeEcCCCCc-cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccc
Confidence 4455555554432 2344444433332 23455555655556776664444567778888888888775 55543
No 414
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=21.41 E-value=1e+03 Score=26.24 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=59.2
Q ss_pred ccEEEEEeCC-----HHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006661 33 GLRVLVVDDD-----ITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (636)
Q Consensus 33 glRVLIVDDD-----~~~re~L~~lL~~~gy--~V~tas--dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~ 103 (636)
.++++|+.+. ....+.|+++.++.+. .|.... +.++..+.++. .|+++.- ...+.=|+-+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~-s~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHT-MWNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEEC-CccCCcccHHHHHHH-
Confidence 4677777653 2345556666655443 243332 24454555542 4666552 222333666666663
Q ss_pred cCCCcEEEEecCCCHHHHHHHHH---cCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 104 EMDLPVIMMSADGRVSAVMRGIR---HGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAle---~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
..+|+|........+ +.++ .|..+|+.. +.+++.+.+.+++.
T Consensus 347 -~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 -AGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -cCCcEEEEcCCCCch---heeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 356777543222222 2234 688889863 89999999988875
No 415
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.30 E-value=4.2e+02 Score=26.20 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=31.7
Q ss_pred CceEEEEeCCCCCC---C----HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcC-CCeE
Q 006661 79 CFDVVLSDVHMPDM---D----GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDY 132 (636)
Q Consensus 79 ~pDLVIlDI~MPdm---D----G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~G-A~DY 132 (636)
..|.+++|..-+.. + ++++++.+. ..+|+++..+- +.+.+.++++.+ +++.
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 46888888865431 2 355666554 45787765544 666677777776 5543
No 416
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.19 E-value=5.1e+02 Score=29.51 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=49.8
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEeCCCCCCCH--HHHHHH
Q 006661 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVHMPDMDG--FKLLEH 100 (636)
Q Consensus 33 glRVLIVDDD~~~---re~L~~lL~~~gy~V~tas---dg----~eALe~Lre~k~~pDLVIlDI~MPdmDG--~ELLk~ 100 (636)
|.+|++|+-|+-- .+.|+.+-+..+..+.... ++ .++++.++.. .+|+||+|.- +... -+++++
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTa--Gr~~~d~~lm~E 203 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTS--GRHKQEDSLFEE 203 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CCCcchHHHHHH
Confidence 6799999888533 2233333333344444332 32 2455555543 4899999973 3221 234444
Q ss_pred Hhc-----cCCCcEEEEecCC--CHHHHHHHHH--cCCCeE-EeC
Q 006661 101 IGL-----EMDLPVIMMSADG--RVSAVMRGIR--HGACDY-LIK 135 (636)
Q Consensus 101 Ir~-----~~~iPVIILSa~~--d~e~v~kAle--~GA~DY-LlK 135 (636)
+.. .++..++++.+.. +.....++|. .+..+. |+|
T Consensus 204 l~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTK 248 (429)
T TIGR01425 204 MLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITK 248 (429)
T ss_pred HHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEEC
Confidence 422 2333445555433 2233456663 355665 445
No 417
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=21.11 E-value=9.4e+02 Score=26.74 Aligned_cols=79 Identities=16% Similarity=0.015 Sum_probs=47.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy-~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmD-G~ELLk~Ir~~~~iPVI 110 (636)
-+|+-+|-++...+..++-+...+. .+ ....+..+.+..+......+|+||+|- |... ..++++.+.....-.+|
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP--Pr~G~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTIIELKPERIV 392 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc--CCCCCCHHHHHHHHhcCCCEEE
Confidence 3799999999988888887776554 23 356677665543322123489999984 3321 25666666432222344
Q ss_pred EEec
Q 006661 111 MMSA 114 (636)
Q Consensus 111 ILSa 114 (636)
.+|.
T Consensus 393 yvsc 396 (431)
T TIGR00479 393 YVSC 396 (431)
T ss_pred EEcC
Confidence 4543
No 418
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=21.02 E-value=8.2e+02 Score=24.23 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=53.8
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE-E----C---CHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHHHhccCC
Q 006661 40 DDDITCLRILEQMLRRCLYNVTT-C----S---QAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIGLEMD 106 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~t-a----s---dg~eALe~Lre~k~~pDLVIlDI~M----P-dmDG~ELLk~Ir~~~~ 106 (636)
.+-....+.++.+-+..+..+.. . . +..+.++.+.+. ..|.|.+.-.. + ..-.++.++.+++..+
T Consensus 106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEAVS 183 (231)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC
Confidence 34445556666665554432221 1 1 223334444443 36766553321 1 1234778888887788
Q ss_pred CcEEEEecCCCHHHHHHHHHc-CCCeE
Q 006661 107 LPVIMMSADGRVSAVMRGIRH-GACDY 132 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~-GA~DY 132 (636)
+|||.--.-.+.+.+.++++. ||+..
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 999988877888999999988 66653
No 419
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=20.97 E-value=3.1e+02 Score=28.89 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCC--C--CC---CCHHHHHHHHhccCCCcEEEEecCC-C-----HHHHHHHHHcCCCe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVH--M--PD---MDGFKLLEHIGLEMDLPVIMMSADG-R-----VSAVMRGIRHGACD 131 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~--M--Pd---mDG~ELLk~Ir~~~~iPVIILSa~~-d-----~e~v~kAle~GA~D 131 (636)
+...|++.+++. +..+|+|+..- . |- .--+..+..+++..++||++=+.+. . ......|+..||++
T Consensus 147 e~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~g 225 (260)
T TIGR01361 147 EWLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADG 225 (260)
T ss_pred HHHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCE
Confidence 345667777654 34689998851 1 21 1123445555555679999844442 2 34556788999998
Q ss_pred -EEeCCCCH
Q 006661 132 -YLIKPIRE 139 (636)
Q Consensus 132 -YLlKPi~~ 139 (636)
+|-|-+++
T Consensus 226 l~iE~H~t~ 234 (260)
T TIGR01361 226 LMIEVHPDP 234 (260)
T ss_pred EEEEeCCCc
Confidence 66665443
No 420
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.94 E-value=8.8e+02 Score=25.87 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=56.6
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE-E-----C---CHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHhc
Q 006661 38 VVDDDITCLRILEQMLRRCLYNVTT-C-----S---QAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGL 103 (636)
Q Consensus 38 IVDDD~~~re~L~~lL~~~gy~V~t-a-----s---dg~eALe~Lre~k~~pDLVIlDI~MPd-----mDG~ELLk~Ir~ 103 (636)
+..+-....+.++.+-+..++.|.. . . +..+..+.+.+. ..|.|.+.-.... .--++.++.|++
T Consensus 112 l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~ 189 (319)
T TIGR00737 112 LLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQ 189 (319)
T ss_pred HhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHH
Confidence 3344455556666655554544421 1 1 123344444443 3677766432221 113677888877
Q ss_pred cCCCcEEEEecCCCHHHHHHHH-HcCCCeEEe
Q 006661 104 EMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAl-e~GA~DYLl 134 (636)
..++|||....-.+.+.+.+++ ..||+....
T Consensus 190 ~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 190 AVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 7779999988888999999999 467776543
No 421
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.94 E-value=6.4e+02 Score=28.48 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=61.1
Q ss_pred CCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCC-CCCCC--HHHHHHHH
Q 006661 28 DQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVH-MPDMD--GFKLLEHI 101 (636)
Q Consensus 28 d~fP~glRVLIVDDD-~~~re~L~~lL~~~gy~V~tas--dg~eALe~Lre~k~~pDLVIlDI~-MPdmD--G~ELLk~I 101 (636)
.-..+|-+|++.+|- --.+..+..++.+.+.+|..+. +..+.++.+.. ...++|+++.- -|-|. -+..+.++
T Consensus 97 ~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~ 174 (396)
T COG0626 97 ALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARL 174 (396)
T ss_pred HhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHH
Confidence 334457889999884 5567788889999888888666 44455555543 23799999862 12222 23333344
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 102 r~~~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
..... .++++=..--..+..+.+++||+=.
T Consensus 175 A~~~g-~~vvVDNTfatP~~q~PL~~GaDIV 204 (396)
T COG0626 175 AKAYG-ALVVVDNTFATPVLQRPLELGADIV 204 (396)
T ss_pred HHhcC-CEEEEECCcccccccChhhcCCCEE
Confidence 33333 4444433333445677788887644
No 422
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=20.90 E-value=3.9e+02 Score=28.74 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=53.4
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCC-----CHHHHHHHHhc
Q 006661 32 AGLRVLVVDDDITCL-RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDM-----DGFKLLEHIGL 103 (636)
Q Consensus 32 ~glRVLIVDDD~~~r-e~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~--MPdm-----DG~ELLk~Ir~ 103 (636)
...+|.|+|..|... ..+...|.+.|..|+...+..-+.-+ . + .|.||+..+ +.+. -|--.+..+.+
T Consensus 140 ~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m-~--~--vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak 214 (301)
T TIGR00511 140 KDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFM-K--E--VDHVVVGADAITANGALINKIGTSQLALAAR 214 (301)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHH-H--h--CCEEEECccEEecCCCEEEHHhHHHHHHHHH
Confidence 457888888887653 34566677778888877776554433 2 2 788887554 3332 25555555556
Q ss_pred cCCCcEEEEecCCCH
Q 006661 104 EMDLPVIMMSADGRV 118 (636)
Q Consensus 104 ~~~iPVIILSa~~d~ 118 (636)
..++|+++++.....
T Consensus 215 ~~~vPv~V~a~~~K~ 229 (301)
T TIGR00511 215 EARVPFMVAAETYKF 229 (301)
T ss_pred HhCCCEEEEccccee
Confidence 678999998765443
No 423
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=20.90 E-value=7.1e+02 Score=25.92 Aligned_cols=75 Identities=9% Similarity=0.093 Sum_probs=45.5
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEEEE-------------CCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHH
Q 006661 34 LRVLVVDDD-ITCLRILEQMLRRCLYNVTTC-------------SQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLL 98 (636)
Q Consensus 34 lRVLIVDDD-~~~re~L~~lL~~~gy~V~ta-------------sdg~eALe~Lre~-k~~pDLVIlDI~MPdmDG~ELL 98 (636)
-||.|+-.- +...+.++++|+..|++|... -+.+...+++++. ..++|.|++- =-.+-.++++
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifis--CTnLrt~~vi 198 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLS--CTALRAATCA 198 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEe--CCCchhHHHH
Confidence 367777665 456677888888888887543 2444555555542 2235655543 1234567777
Q ss_pred HHHhccCCCcEE
Q 006661 99 EHIGLEMDLPVI 110 (636)
Q Consensus 99 k~Ir~~~~iPVI 110 (636)
+.|......|||
T Consensus 199 ~~lE~~lGkPVl 210 (239)
T TIGR02990 199 QRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHCCCEE
Confidence 777656677775
No 424
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.88 E-value=1.2e+03 Score=26.01 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~M-------PdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+-.+.+.+.. .|+|.++-.. +..+..++.+.++. .++|||. ..-.+.+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666666544 8999996532 22255666666554 5788876 4456677888999999998755
No 425
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.71 E-value=1e+03 Score=25.12 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=59.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEE-eC-CCCC------CCHHHHHHHHhcc
Q 006661 36 VLVVDDDITCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLS-DV-HMPD------MDGFKLLEHIGLE 104 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~t-as--dg~eALe~Lre~k~~pDLVIl-DI-~MPd------mDG~ELLk~Ir~~ 104 (636)
|+|.|=-..-.+.+...+++.+...+. ++ ...+-++.+.+.. .+.|-+ .. .-.+ .+..++++++++.
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 344444444455566666666654432 32 3234455555544 444422 11 1111 2355688888877
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
.++||++=.+-.+.+.+.++.+. |++.++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 78999998888888888888875 99988864
No 426
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=20.70 E-value=4.6e+02 Score=28.71 Aligned_cols=64 Identities=25% Similarity=0.194 Sum_probs=40.3
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEE--------CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVTTC--------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 33 glRVLIVDDD-~~~re~L~~lL~~~gy~V~ta--------sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
+-|+|||-|. ....+.+...|+..+.++..+ ++..++++.+++.+ +|+||- ..+..-+++.+.+
T Consensus 22 ~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~aK~i 94 (374)
T cd08183 22 GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAG--CDVVIA---IGGGSVIDAGKAI 94 (374)
T ss_pred CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcC--CCEEEE---ecCchHHHHHHHH
Confidence 3588888765 335566777777766655433 23556777776654 898876 4565556665554
No 427
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=20.59 E-value=1e+03 Score=29.37 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=72.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC----CCeE-EEECCHHHHHHH----------------HHHcCCCceEEEEeCCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRC----LYNV-TTCSQAAVALDI----------------LRERKGCFDVVLSDVHM 89 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~----gy~V-~tasdg~eALe~----------------Lre~k~~pDLVIlDI~M 89 (636)
+...+|++.-.++...+.+..+++.. +.+| ..|.++.|.++. ++. ..+|++++|.+=
T Consensus 235 ~~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~T--GavD~~VvD~QC 312 (781)
T PRK00941 235 KSKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRS--GIPDVIVVDEQC 312 (781)
T ss_pred CCCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHc--CCCcEEEEeccc
Confidence 45678999999999999998887632 4544 366666665532 222 348999999974
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEec----------CCCHHHHHHHHHcCC-C-eEEeCCCCHHHHHHHHHHHHHH
Q 006661 90 PDMDGFKLLEHIGLEMDLPVIMMSA----------DGRVSAVMRGIRHGA-C-DYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 90 PdmDG~ELLk~Ir~~~~iPVIILSa----------~~d~e~v~kAle~GA-~-DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.--+-.++.+ ..+.++|-+|. +++.+.+.+.+..|- . -+|+-|...-|+.-.+...+.+
T Consensus 313 i~p~L~eiA~----~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~~ 383 (781)
T PRK00941 313 VRTDILEEAK----KLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVAP 383 (781)
T ss_pred CcccHHHHHH----HhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHhh
Confidence 3333333443 34455665543 346666766665544 3 3677777777776555444433
No 428
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=20.56 E-value=5.2e+02 Score=25.82 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=50.0
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 63 CSQAAVALDILRERKGCFDVVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pDLVIlDI~MP---dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..++.+..+.+.+.. --.|.|.|+.-- ...-+++++++++.-.+|+++-..-.+.+.+.++++.||+..++-
T Consensus 28 ~~dp~~~a~~~~~~g-~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvig 102 (234)
T cd04732 28 SDDPVEVAKKWEEAG-AKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIG 102 (234)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 346666666666532 124666676432 233477888887766899999888888999999999997766543
No 429
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=20.38 E-value=3.4e+02 Score=30.42 Aligned_cols=54 Identities=24% Similarity=0.251 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---E-EEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYN---V-TTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~---V-~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
-+|.-||-++...+..++-+...++. + ....|..+.+..+......||+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 48999999999999999998877652 3 356677777765543333599999994
No 430
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=20.38 E-value=2.1e+02 Score=27.68 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHH
Q 006661 228 ELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHL 268 (636)
Q Consensus 228 ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHL 268 (636)
++++.+.+++..|-... +.++.+.-+.|++.++||..|
T Consensus 127 ~~~~~l~~~l~~L~~~~---r~v~~l~~~~g~s~~eIA~~l 164 (193)
T PRK11923 127 EIEGTVHRTIQQLPEDL---RTALTLREFDGLSYEDIASVM 164 (193)
T ss_pred HHHHHHHHHHHhCCHHH---hHHHhhHHhcCCCHHHHHHHH
Confidence 45556667777664211 234554456666655555444
No 431
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=20.36 E-value=1.1e+03 Score=25.24 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=52.6
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 33 GLRVLVV-DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 33 glRVLIV-DDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
.++++++ .++...++.+++..+..+-.|....-..+..+++.. .|+++++ ++ |..+++.+. ..+|+|+
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~g--g~t~~EA~a--~g~PvI~ 298 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---PG--GITLSEAAA--LGVPVIL 298 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---CC--chHHHHHHH--hCCCEEE
Confidence 4565544 555555666666655433234433332333333332 4777763 22 555556553 4678776
Q ss_pred EecCC--CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 112 MSADG--RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 112 LSa~~--d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
..... ..+......+.|+ ...+-+.++|.+.+.+++.
T Consensus 299 ~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 299 YKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 43222 1111222224454 3334577888888877753
No 432
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.35 E-value=4.6e+02 Score=28.33 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=53.8
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCC-----CHHHHHHHHhc
Q 006661 32 AGLRVLVVDDDITCL-RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDM-----DGFKLLEHIGL 103 (636)
Q Consensus 32 ~glRVLIVDDD~~~r-e~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~--MPdm-----DG~ELLk~Ir~ 103 (636)
...+|.|+|-.|... ..+...|.+.|..|+...|..-+.-+ . + +|.||+..+ +.+. -|--.+..+.+
T Consensus 145 k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m-~--~--vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak 219 (310)
T PRK08535 145 KDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFM-K--D--VDKVVVGADAITANGAVINKIGTSQIALAAH 219 (310)
T ss_pred CeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHH-H--h--CCEEEECccEEecCCCEEeHHhHHHHHHHHH
Confidence 457899888888653 34556677778888877776555433 2 2 788887554 3332 25555555656
Q ss_pred cCCCcEEEEecCCCH
Q 006661 104 EMDLPVIMMSADGRV 118 (636)
Q Consensus 104 ~~~iPVIILSa~~d~ 118 (636)
..++||++++.....
T Consensus 220 ~~~vPv~V~a~~~K~ 234 (310)
T PRK08535 220 EARVPFMVAAETYKF 234 (310)
T ss_pred HhCCCEEEeccccee
Confidence 678999998765443
No 433
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=20.23 E-value=6.5e+02 Score=25.10 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCeEEEEC--CHH---HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006661 46 LRILEQMLRRCLYNVTTCS--QAA---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (636)
Q Consensus 46 re~L~~lL~~~gy~V~tas--dg~---eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~ 115 (636)
...+++.+++.+|.+..+. +.+ +.++.+.... +|-||+ +|....-.+.+.+.....+||+++...
T Consensus 20 ~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~--vdgiii---~~~~~~~~~~~~~~~~~~ipvv~~~~~ 89 (260)
T cd06304 20 YEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQG--YDLIFG---VGFGFMDAVEKVAKEYPDVKFAIIDGV 89 (260)
T ss_pred HHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcC--CCEEEE---CCcchhHHHHHHHHHCCCCEEEEecCc
Confidence 3566667777789876543 222 3444444443 886655 222112233333433346798887653
No 434
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.19 E-value=6.7e+02 Score=24.69 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006661 43 ITCLRILEQMLRRCLYNVTTCSQ---A---AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (636)
Q Consensus 43 ~~~re~L~~lL~~~gy~V~tasd---g---~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~ 115 (636)
..+...+++.+++.+|.+..... . .++++.+.... +|-||+.-..++ . ..++++. ..++|+|++-..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~~ 87 (270)
T cd06296 15 SEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARR--TDGVILVTPELT--S-AQRAALR-RTGIPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcC--CCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEecc
Confidence 34556777778888998765432 2 24555555544 897776433332 2 3455553 357899988543
No 435
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.19 E-value=1.1e+03 Score=26.98 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=31.4
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEE---CCHHHHH-HHHHHcCCCceEEEEeCC
Q 006661 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTC---SQAAVAL-DILRERKGCFDVVLSDVH 88 (636)
Q Consensus 32 ~glRVLIVDDD~~---~re~L~~lL~~~gy~V~ta---sdg~eAL-e~Lre~k~~pDLVIlDI~ 88 (636)
.+.+|++|+-|.. ..+.++.+....+..+... .+..+.+ +.++... ..|+||+|.-
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 3679999988853 3344555555556555543 2333322 2333322 2599999973
No 436
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=20.19 E-value=2.4e+02 Score=29.08 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=34.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHH
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVAL 70 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eAL 70 (636)
+++|.|||=..-++..+.+.|++.++++....+.++..
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~ 38 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL 38 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHh
Confidence 46899999999999999999999999999999988743
No 437
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=20.19 E-value=5.4e+02 Score=25.94 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCeEEEECC--H---HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006661 44 TCLRILEQMLRRCLYNVTTCSQ--A---AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (636)
Q Consensus 44 ~~re~L~~lL~~~gy~V~tasd--g---~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa 114 (636)
.....+++.+++.+|.+..+.. . .+.++.+.... +|-||+-- +..+ -...+.++...++|+|++..
T Consensus 19 ~~~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~--vdgiI~~~--~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 19 SAWEGLERAAKELGIEYKYVESKSDADYEPNLEQLADAG--YDLIVGVG--FLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCC--CCEEEEcC--cchH-HHHHHHHHHCCCCEEEEEec
Confidence 3455666777778998776532 2 23455554444 88777631 1122 23334444335789988754
No 438
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.06 E-value=5.1e+02 Score=26.75 Aligned_cols=68 Identities=6% Similarity=0.003 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdm-DG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+.++.+.+.. .=.+|++|+.--++ .| +++++.+++.. .|+|.--.-.+.+++.++.+.|+++.++
T Consensus 147 ~~~e~~~~l~~~g-~~~ii~tdI~~dGt~~G~d~el~~~~~~~~-~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNELE-LLGIIFTYISNEGTTKGIDYNVKDYARLIR-GLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHhcC-CCEEEEecccccccCcCcCHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4556666665542 23899999976653 44 56788886553 4566545556778888888999998776
No 439
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.04 E-value=9.8e+02 Score=24.73 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=70.4
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhCCCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHH
Q 006661 33 GLRVLVVDDDI----TCLRILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHI 101 (636)
Q Consensus 33 glRVLIVDDD~----~~re~L~~lL~~~gy~V--~tasdg~eALe~Lre~k~~pDLVIlDI~MP-----dmDG~ELLk~I 101 (636)
.+.+-|-|... .....+-..|+..|+.+ ..+..|-..+..+.... ||.|=+|-.+- +.....+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHH
Confidence 44444445433 13344555566667765 47889999999998866 99999987543 22334456555
Q ss_pred ---hccCCCcEEEEecCCCHHHHHHHHHcCCC----eEEeCCCCHHHHHHHHH
Q 006661 102 ---GLEMDLPVIMMSADGRVSAVMRGIRHGAC----DYLIKPIREEELKNIWQ 147 (636)
Q Consensus 102 ---r~~~~iPVIILSa~~d~e~v~kAle~GA~----DYLlKPi~~eeLk~~Iq 147 (636)
....++.||.= .-.+.+......+.|++ .|+.||...+++...+.
T Consensus 199 v~la~~l~~~vvaE-GVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 199 VALAHKLGLTVVAE-GVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHCCCEEEEe-ecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 23345556543 33455556666788887 36889999877766554
Done!